BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (673 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 588 e-166 UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 588 e-166 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 576 e-162 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 572 e-161 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 552 e-155 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 552 e-155 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 545 e-153 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 543 e-153 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 542 e-152 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 539 e-151 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 537 e-151 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 530 e-149 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 528 e-148 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 524 e-147 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 513 e-143 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 498 e-139 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 460 e-128 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 401 e-110 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 371 e-101 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 354 5e-96 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 345 4e-93 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 342 2e-92 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 333 2e-89 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 330 1e-88 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 326 1e-87 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 326 2e-87 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 325 2e-87 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 325 3e-87 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 325 4e-87 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 319 2e-85 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 318 5e-85 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 317 7e-85 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 313 1e-83 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 312 2e-83 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 311 4e-83 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 304 7e-81 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 300 1e-79 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 299 2e-79 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 298 5e-79 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 296 2e-78 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 294 7e-78 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 292 3e-77 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 292 3e-77 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 292 4e-77 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 291 6e-77 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 290 2e-76 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 287 1e-75 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 285 5e-75 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 283 2e-74 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 282 2e-74 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 282 3e-74 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 280 1e-73 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 278 4e-73 UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular or... 278 5e-73 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 277 1e-72 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 273 2e-71 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 273 2e-71 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 273 2e-71 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 265 6e-69 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 262 5e-68 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 261 8e-68 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 259 3e-67 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 258 4e-67 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 257 1e-66 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 255 5e-66 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 255 5e-66 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 255 6e-66 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 254 6e-66 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 253 2e-65 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 252 3e-65 UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 ... 252 3e-65 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 251 6e-65 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 251 7e-65 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 251 9e-65 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 248 5e-64 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 248 6e-64 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 248 6e-64 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 247 8e-64 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 247 1e-63 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 246 2e-63 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 245 4e-63 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 245 4e-63 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 245 4e-63 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 244 7e-63 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 244 7e-63 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 244 1e-62 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 242 3e-62 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 242 3e-62 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 242 4e-62 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 242 4e-62 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 239 2e-61 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 238 6e-61 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 238 8e-61 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 237 1e-60 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 236 2e-60 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 234 7e-60 UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=La... 234 9e-60 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 234 1e-59 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 233 2e-59 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 233 2e-59 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 232 3e-59 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 231 9e-59 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 230 1e-58 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 230 1e-58 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 229 2e-58 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 229 3e-58 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 229 3e-58 UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Str... 227 9e-58 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 225 6e-57 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 225 6e-57 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 225 7e-57 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 223 1e-56 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 223 2e-56 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 221 7e-56 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 221 9e-56 UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Sti... 220 1e-55 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 220 1e-55 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 220 2e-55 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 220 2e-55 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 219 2e-55 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 218 8e-55 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 217 1e-54 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 216 1e-54 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 215 7e-54 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 215 7e-54 UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamil... 214 7e-54 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 214 8e-54 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 214 1e-53 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 213 2e-53 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 213 2e-53 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 213 3e-53 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 212 3e-53 UniRef50_C1N749 Exinuclease ABC subunits B and C-containing prot... 211 5e-53 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 211 9e-53 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 211 1e-52 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 210 2e-52 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 208 4e-52 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 207 1e-51 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 206 2e-51 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 206 3e-51 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 205 4e-51 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 205 5e-51 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 205 5e-51 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 204 1e-50 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 203 2e-50 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 203 3e-50 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 202 4e-50 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 201 5e-50 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 201 6e-50 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 201 8e-50 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 201 1e-49 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 200 1e-49 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 200 1e-49 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 200 1e-49 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 199 3e-49 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 199 4e-49 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 198 4e-49 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 198 5e-49 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 198 6e-49 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 196 2e-48 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 196 2e-48 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 196 2e-48 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 196 3e-48 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 196 3e-48 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 195 4e-48 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 195 5e-48 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 195 5e-48 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 195 7e-48 UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS 194 1e-47 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 194 1e-47 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 193 2e-47 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 193 2e-47 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 193 2e-47 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 193 2e-47 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 191 5e-47 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 191 6e-47 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 191 8e-47 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 191 9e-47 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 191 9e-47 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 191 1e-46 UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetaz... 191 1e-46 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 190 1e-46 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 190 1e-46 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 190 1e-46 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 190 2e-46 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 190 2e-46 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 189 3e-46 UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomyc... 189 3e-46 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 188 4e-46 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 188 4e-46 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 188 4e-46 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 188 5e-46 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 188 5e-46 UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 T... 188 5e-46 UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA 188 6e-46 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 188 8e-46 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 188 9e-46 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 187 1e-45 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 187 1e-45 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 187 1e-45 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 187 1e-45 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 187 1e-45 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 187 1e-45 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 187 1e-45 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 187 1e-45 UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Ta... 186 2e-45 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 186 2e-45 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 186 2e-45 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 186 2e-45 UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7V... 186 2e-45 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 186 2e-45 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 186 3e-45 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 186 3e-45 UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME 186 3e-45 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 186 3e-45 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 186 3e-45 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 185 4e-45 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 185 4e-45 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 185 5e-45 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 185 5e-45 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 185 5e-45 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 185 5e-45 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 185 6e-45 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 185 6e-45 UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax... 185 7e-45 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 185 7e-45 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 185 7e-45 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 185 7e-45 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 185 8e-45 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 184 8e-45 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 184 9e-45 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 184 9e-45 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 184 9e-45 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 184 1e-44 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 184 1e-44 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 184 1e-44 UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 ... 184 1e-44 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 184 1e-44 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 184 1e-44 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 184 1e-44 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 184 1e-44 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 183 1e-44 UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida ... 183 2e-44 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 183 2e-44 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 183 2e-44 UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi... 183 2e-44 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 183 3e-44 UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 182 3e-44 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 182 3e-44 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 182 3e-44 UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bac... 182 5e-44 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 181 7e-44 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 181 7e-44 UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micr... 181 8e-44 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 181 8e-44 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 181 1e-43 UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7... 181 1e-43 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 180 1e-43 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 180 1e-43 UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza s... 180 1e-43 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 180 1e-43 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 180 1e-43 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 180 1e-43 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 180 2e-43 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 180 2e-43 UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH 180 2e-43 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 180 2e-43 UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Try... 180 2e-43 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 180 2e-43 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 180 2e-43 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 179 2e-43 UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family... 179 3e-43 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 179 3e-43 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 179 3e-43 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 179 3e-43 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 179 4e-43 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 179 4e-43 UniRef50_UPI000197B5E2 hypothetical protein BACCOPRO_02808 n=1 T... 179 4e-43 UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickett... 178 4e-43 UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rho... 178 4e-43 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 178 5e-43 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 178 5e-43 UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID... 178 5e-43 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 178 6e-43 UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoe... 178 7e-43 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 178 8e-43 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 178 9e-43 UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 178 9e-43 UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Pre... 177 1e-42 UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Ta... 177 1e-42 UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukary... 177 1e-42 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 177 1e-42 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 177 1e-42 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 177 1e-42 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 177 1e-42 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 177 1e-42 UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 ... 177 1e-42 UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax... 177 1e-42 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 177 1e-42 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 177 1e-42 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 177 2e-42 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 177 2e-42 UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Des... 177 2e-42 UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Ta... 176 2e-42 UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosa... 176 2e-42 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 176 2e-42 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 176 2e-42 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 176 2e-42 UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Gl... 176 2e-42 UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E... 176 2e-42 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 176 2e-42 UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA 176 3e-42 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 176 3e-42 UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana Re... 176 3e-42 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 176 3e-42 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 176 3e-42 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 176 4e-42 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 175 4e-42 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 175 4e-42 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 175 4e-42 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 175 4e-42 UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabd... 175 4e-42 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 175 5e-42 UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, s... 175 6e-42 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 174 7e-42 UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, puta... 174 7e-42 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 174 7e-42 UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax... 174 7e-42 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 174 7e-42 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 174 7e-42 UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n... 174 9e-42 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 174 9e-42 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 174 9e-42 UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA 174 9e-42 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 174 1e-41 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 174 1e-41 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 173 1e-41 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 173 1e-41 UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genom... 173 2e-41 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 173 2e-41 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 173 2e-41 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 173 2e-41 UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 173 2e-41 UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryot... 173 2e-41 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 173 2e-41 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 173 2e-41 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 173 2e-41 UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/M... 173 2e-41 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 173 2e-41 UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa Re... 173 2e-41 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 173 3e-41 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 172 3e-41 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 172 3e-41 UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=... 172 3e-41 UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa Re... 172 4e-41 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 172 4e-41 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 172 4e-41 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 172 4e-41 UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoo... 172 4e-41 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 172 4e-41 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 172 5e-41 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 172 5e-41 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 172 5e-41 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 172 5e-41 UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5... 171 6e-41 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 171 6e-41 UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Pre... 171 6e-41 UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Pre... 171 6e-41 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 171 6e-41 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 171 6e-41 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 171 7e-41 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 171 7e-41 UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA)... 171 7e-41 UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa Re... 171 7e-41 UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 171 7e-41 UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7... 171 8e-41 UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genom... 171 8e-41 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 171 1e-40 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 171 1e-40 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 170 1e-40 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 170 1e-40 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 170 1e-40 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 170 1e-40 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 170 1e-40 UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 T... 170 1e-40 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 170 1e-40 UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, puta... 170 1e-40 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 170 2e-40 UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCM... 170 2e-40 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 170 2e-40 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 170 2e-40 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 170 2e-40 UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 ... 170 2e-40 UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepI... 170 2e-40 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 169 2e-40 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 169 2e-40 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 169 2e-40 UniRef50_C5KW96 Helicase, putative n=2 Tax=Perkinsus marinus ATC... 169 2e-40 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 169 2e-40 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 169 2e-40 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 169 2e-40 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 169 2e-40 UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Ana... 169 3e-40 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 169 3e-40 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 169 3e-40 UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=... 169 3e-40 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 169 3e-40 UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 ... 169 3e-40 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 169 3e-40 UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=ro... 169 3e-40 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 169 3e-40 UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Ta... 169 4e-40 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 169 4e-40 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 169 4e-40 UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Po... 169 4e-40 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 169 4e-40 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 169 4e-40 UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=ro... 168 4e-40 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 168 5e-40 UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Ch... 168 5e-40 UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 168 5e-40 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 168 5e-40 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 168 5e-40 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 168 5e-40 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 168 6e-40 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 168 6e-40 UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria g... 168 6e-40 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 168 6e-40 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 168 6e-40 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 168 6e-40 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 168 7e-40 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 168 7e-40 UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 168 7e-40 UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bac... 168 8e-40 UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Al... 168 8e-40 UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Ac... 168 8e-40 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 168 9e-40 UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, put... 168 9e-40 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 168 9e-40 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 168 9e-40 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 167 1e-39 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 167 1e-39 UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Des... 167 1e-39 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 167 1e-39 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 167 1e-39 UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 167 1e-39 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 167 1e-39 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 167 1e-39 UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 167 1e-39 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 167 1e-39 UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=El... 167 2e-39 UniRef50_Q255X7 Transcription-repair coupling factor-superfamily... 167 2e-39 UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepI... 166 2e-39 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 166 2e-39 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 166 2e-39 UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Vic... 166 2e-39 UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=B... 166 2e-39 UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C... 166 2e-39 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 166 2e-39 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 166 2e-39 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 166 2e-39 UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein... 166 2e-39 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 166 2e-39 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 166 2e-39 UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=At... 166 2e-39 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 166 2e-39 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 166 2e-39 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 166 2e-39 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 166 3e-39 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 166 3e-39 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 166 3e-39 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 166 4e-39 UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gem... 166 4e-39 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 165 4e-39 UniRef50_C2K9U3 ATP-dependent RNA helicase (Fragment) n=2 Tax=St... 165 4e-39 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 165 4e-39 UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 ... 165 5e-39 UniRef50_UPI0001745840 transcription-repair coupling factor n=1 ... 165 5e-39 UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=... 165 6e-39 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 165 6e-39 UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Ma... 165 6e-39 UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-depend... 164 7e-39 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 164 7e-39 UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID... 164 7e-39 UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasi... 164 7e-39 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 164 7e-39 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 164 7e-39 UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Cio... 164 7e-39 UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 164 8e-39 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 164 9e-39 UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 164 9e-39 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 164 9e-39 UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax... 164 1e-38 UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon... 164 1e-38 UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA hel... 164 1e-38 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 164 1e-38 UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Meth... 164 1e-38 UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genom... 164 1e-38 UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 164 1e-38 UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase p... 164 1e-38 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 164 1e-38 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 164 1e-38 UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 164 1e-38 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 163 1e-38 UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales ... 163 2e-38 UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9... 163 2e-38 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 163 2e-38 UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus... 163 2e-38 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 163 2e-38 UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bac... 163 2e-38 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 163 2e-38 UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Des... 163 2e-38 UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=V... 163 2e-38 UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 163 2e-38 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 163 2e-38 UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 163 2e-38 UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=The... 163 3e-38 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 163 3e-38 UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase P... 163 3e-38 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 163 3e-38 UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoe... 163 3e-38 UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Try... 163 3e-38 UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 163 3e-38 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 162 3e-38 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 162 4e-38 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 162 4e-38 UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis R... 162 4e-38 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 162 4e-38 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 162 4e-38 UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=... 162 4e-38 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 162 5e-38 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 162 5e-38 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 162 5e-38 UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Pir... 162 5e-38 UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 161 5e-38 UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 161 6e-38 UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box fa... 161 6e-38 UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Te... 161 6e-38 UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=... 161 6e-38 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 161 6e-38 UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Fla... 161 7e-38 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 161 7e-38 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 161 7e-38 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 161 7e-38 UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacte... 161 7e-38 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 161 8e-38 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 161 8e-38 UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis... 161 8e-38 UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4... 161 8e-38 UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhard... 161 8e-38 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 161 1e-37 UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Br... 161 1e-37 UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Pla... 161 1e-37 UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eub... 161 1e-37 UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n... 161 1e-37 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 161 1e-37 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 161 1e-37 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 161 1e-37 UniRef50_C1XT24 Transcription-repair coupling factor (Superfamil... 161 1e-37 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 161 1e-37 UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 161 1e-37 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 160 1e-37 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 160 1e-37 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 160 1e-37 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 160 1e-37 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 160 1e-37 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 160 2e-37 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 160 2e-37 UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis R... 160 2e-37 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 160 2e-37 UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID... 159 2e-37 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 159 2e-37 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 159 2e-37 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 159 2e-37 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 159 3e-37 UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella gry... 159 3e-37 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 159 3e-37 UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 159 3e-37 UniRef50_A0C369 Chromosome undetermined scaffold_146, whole geno... 159 3e-37 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 159 3e-37 UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccha... 159 3e-37 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 159 4e-37 UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 159 4e-37 UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 159 4e-37 UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 T... 159 4e-37 UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Lept... 159 4e-37 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 159 4e-37 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 159 4e-37 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 159 4e-37 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 158 5e-37 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 158 5e-37 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 158 5e-37 UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi R... 158 5e-37 UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudona... 158 6e-37 UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candi... 158 7e-37 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 158 7e-37 UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Myco... 158 7e-37 UniRef50_Q23WN3 Helicase conserved C-terminal domain containing ... 158 7e-37 UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 158 7e-37 UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Euk... 158 8e-37 UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP... 158 8e-37 UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH... 158 8e-37 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 158 9e-37 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 158 9e-37 UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase p... 158 9e-37 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 158 9e-37 UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-depend... 158 1e-36 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 157 1e-36 UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 157 1e-36 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 157 1e-36 UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Su... 157 1e-36 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 157 1e-36 UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium d... 157 1e-36 UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphi... 157 1e-36 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 157 2e-36 UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiother... 156 2e-36 UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 156 2e-36 UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome... 156 2e-36 UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyos... 156 2e-36 UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum... 156 2e-36 UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=A... 156 2e-36 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 156 2e-36 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 156 2e-36 UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira... 156 3e-36 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 156 3e-36 UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genom... 156 3e-36 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 156 3e-36 UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genom... 156 3e-36 UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algo... 156 3e-36 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 156 3e-36 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 156 3e-36 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 156 3e-36 UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 156 4e-36 UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulf... 156 4e-36 UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase... 156 4e-36 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 155 4e-36 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 155 4e-36 UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter... 155 4e-36 UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=... 155 4e-36 UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 ... 155 4e-36 UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=... 155 4e-36 UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 155 4e-36 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 155 4e-36 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 155 5e-36 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 155 5e-36 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 155 5e-36 UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 ... 155 5e-36 UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary f... 155 5e-36 UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Tr... 155 5e-36 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 155 5e-36 UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=... 155 6e-36 UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminoco... 155 6e-36 UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 155 6e-36 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 155 6e-36 UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=... 155 7e-36 UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerot... 154 7e-36 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 154 7e-36 UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum Rep... 154 7e-36 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 154 8e-36 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 154 9e-36 UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichop... 154 9e-36 UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreoco... 154 9e-36 UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizos... 154 1e-35 UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Pr... 154 1e-35 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 154 1e-35 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 154 1e-35 UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabd... 154 1e-35 UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n... 154 1e-35 UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase p... 154 1e-35 UniRef50_C4V744 Putative uncharacterized protein n=1 Tax=Nosema ... 154 1e-35 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 154 1e-35 UniRef50_Q7RNB9 Helicase conserved C-terminal domain, putative n... 154 1e-35 UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 153 1e-35 UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Ta... 153 1e-35 UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Pe... 153 2e-35 UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 153 2e-35 UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 ... 153 2e-35 UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCM... 153 2e-35 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 153 2e-35 UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lent... 153 2e-35 UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes... 153 2e-35 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 153 2e-35 UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 ... 153 2e-35 UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax... 153 2e-35 UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota ... 153 2e-35 UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax... 153 3e-35 UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 153 3e-35 UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intes... 153 3e-35 UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) ... 153 3e-35 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 153 3e-35 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 153 3e-35 UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteri... 153 3e-35 UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteob... 153 3e-35 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 153 3e-35 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 152 3e-35 UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 152 3e-35 UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 152 4e-35 UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=... 152 4e-35 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 152 4e-35 UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=... 152 4e-35 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 152 4e-35 UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Crypto... 152 4e-35 UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=c... 152 4e-35 UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas Re... 152 4e-35 UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aq... 152 4e-35 UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 152 4e-35 UniRef50_UPI0001AEC3C5 transcription-repair coupling factor n=1 ... 152 5e-35 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 152 5e-35 UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyos... 152 5e-35 UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=He... 152 5e-35 UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=The... 152 5e-35 UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=... 152 5e-35 UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lambl... 152 5e-35 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 152 5e-35 UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=E... 152 5e-35 UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=... 152 5e-35 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 152 5e-35 UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 152 6e-35 UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia e... 151 6e-35 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 151 6e-35 UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gamm... 151 6e-35 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 151 6e-35 UniRef50_B9RED5 Dead box ATP-dependent RNA helicase, putative n=... 151 7e-35 UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano Re... 151 7e-35 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 151 7e-35 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 151 9e-35 UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 151 9e-35 UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH 151 9e-35 UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialiste... 151 1e-34 UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii Re... 151 1e-34 UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyos... 151 1e-34 UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole geno... 151 1e-34 UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase P... 151 1e-34 UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammap... 150 1e-34 UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum '... 150 1e-34 UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-depend... 150 1e-34 UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricom... 150 1e-34 UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 150 1e-34 UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limn... 150 1e-34 UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostri... 150 1e-34 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 150 1e-34 UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CB... 150 2e-34 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 150 2e-34 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 150 2e-34 UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Pla... 150 2e-34 UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera ... 150 2e-34 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 150 2e-34 UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyos... 150 2e-34 UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorh... 150 2e-34 UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP 150 2e-34 UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in... 150 2e-34 UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammap... 150 2e-34 UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-... 149 2e-34 UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacteriu... 149 2e-34 UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Ta... 149 2e-34 UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=... 149 2e-34 UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus Re... 149 2e-34 UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lent... 149 3e-34 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 149 3e-34 UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponem... 149 3e-34 UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gam... 149 3e-34 UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 T... 149 3e-34 UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Ba... 149 3e-34 UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 149 3e-34 UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp... 149 3e-34 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 149 3e-34 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 149 3e-34 UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 149 3e-34 UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 149 4e-34 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 149 4e-34 UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermoph... 149 4e-34 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 148 5e-34 UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas ... 148 5e-34 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 148 5e-34 UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=D... 148 5e-34 UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasm... 148 5e-34 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 148 6e-34 UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buc... 148 6e-34 UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellula... 148 6e-34 UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 148 6e-34 UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus K... 148 6e-34 UniRef50_A5BHG9 Putative uncharacterized protein n=2 Tax=Vitis v... 148 6e-34 UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fus... 148 6e-34 UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transc... 148 7e-34 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 148 7e-34 UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acid... 148 7e-34 UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX... 148 7e-34 UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 148 8e-34 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 148 8e-34 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 148 8e-34 UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Tr... 148 1e-33 UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanoso... 148 1e-33 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 148 1e-33 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 148 1e-33 UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1... 148 1e-33 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 147 1e-33 UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 147 1e-33 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 147 1e-33 UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya... 147 1e-33 UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii Re... 147 1e-33 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 147 1e-33 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 147 1e-33 UniRef50_UPI0001906F62 transcription-repair coupling factor (TRC... 147 1e-33 UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malasse... 147 1e-33 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 147 2e-33 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 147 2e-33 UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteure... 146 2e-33 UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilagi... 146 2e-33 UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein... 146 2e-33 UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 146 2e-33 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 146 2e-33 UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 146 2e-33 UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=... 146 2e-33 UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 146 2e-33 UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genom... 146 2e-33 UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Bo... 146 2e-33 UniRef50_UPI000190E2D1 ATP-dependent RNA helicase DbpA n=3 Tax=S... 146 2e-33 UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dicheloba... 146 3e-33 UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii Re... 146 3e-33 UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Us... 146 3e-33 UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsu... 146 3e-33 UniRef50_Q7PH63 AGAP003663-PA (Fragment) n=1 Tax=Anopheles gambi... 146 3e-33 UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids ... 146 3e-33 UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmod... 146 3e-33 UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 146 4e-33 UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Hel... 145 4e-33 UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteob... 145 4e-33 UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 145 4e-33 UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ... 145 5e-33 UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B... 145 5e-33 UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 145 6e-33 UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis R... 145 6e-33 UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Se... 145 6e-33 UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteri... 144 7e-33 UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 144 7e-33 UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=De... 144 8e-33 UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 144 9e-33 UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=El... 144 9e-33 UniRef50_Q09775 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosa... 144 9e-33 UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 ... 144 1e-32 UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=can... 144 1e-32 UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=... 144 1e-32 UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelo... 144 1e-32 UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI... 144 1e-32 UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=S... 143 2e-32 UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 T... 143 2e-32 UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=... 143 2e-32 UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase P... 143 2e-32 UniRef50_B7XJD7 Superfamily II DNA/RNA helicase n=1 Tax=Enterocy... 143 2e-32 UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Ol... 143 2e-32 UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME 143 2e-32 UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Ka... 143 2e-32 UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Ca... 143 2e-32 UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Te... 143 3e-32 UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 143 3e-32 UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 143 3e-32 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 143 3e-32 UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Pla... 143 3e-32 UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=... 142 4e-32 UniRef50_Q9C886 RNA helicase, 5' partial; 101954-101280 (Fragmen... 142 4e-32 UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S... 142 4e-32 UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax... 142 4e-32 UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcu... 142 4e-32 UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Ep... 142 4e-32 UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter ... 142 5e-32 UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira ps... 142 5e-32 UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcr... 142 5e-32 UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12U... 142 5e-32 UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax... 142 5e-32 UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=De... 142 5e-32 UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein... 142 5e-32 UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 142 5e-32 UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornu... 142 5e-32 UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encepha... 142 5e-32 UniRef50_C4QDH8 DEAD box ATP-dependent RNA helicase, putative n=... 141 6e-32 UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus t... 141 6e-32 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 141 7e-32 UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836... 141 7e-32 UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bac... 141 7e-32 UniRef50_B8BWZ3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 141 7e-32 UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 ... 141 7e-32 UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=... 141 7e-32 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 141 7e-32 UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF... 141 8e-32 UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Cam... 141 8e-32 UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergi... 141 8e-32 UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosa... 141 8e-32 UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP 141 9e-32 UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Nept... 141 9e-32 UniRef50_C6LWE2 ATP-dependent RNA helicase-like protein n=2 Tax=... 141 1e-31 UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=M... 141 1e-31 UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 141 1e-31 UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 141 1e-31 UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 141 1e-31 UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase P... 141 1e-31 UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=St... 140 1e-31 UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacter... 140 1e-31 UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Hel... 140 1e-31 UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 140 2e-31 UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchi... 140 2e-31 UniRef50_B0EBD5 DEAD box ATP-dependent RNA helicase, putative n=... 140 2e-31 UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=De... 140 2e-31 UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII ... 140 2e-31 UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 140 2e-31 UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Euk... 140 2e-31 UniRef50_Q2R377 CarD-like transcriptional regulator family prote... 140 2e-31 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 140 2e-31 UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 139 2e-31 UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleos... 139 2e-31 UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME 139 3e-31 UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing ... 139 3e-31 UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1... 139 3e-31 UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammapr... 139 3e-31 UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Para... 139 3e-31 UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorh... 139 3e-31 UniRef50_B7G370 Predicted protein n=3 Tax=Bacillariophyta RepID=... 139 4e-31 UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=... 139 4e-31 UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marin... 139 4e-31 UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia ja... 139 4e-31 UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteri... 139 4e-31 UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=The... 139 4e-31 UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12... 139 5e-31 UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella ma... 138 5e-31 UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa ... 138 5e-31 UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianu... 138 6e-31 UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3... 138 6e-31 UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetom... 138 6e-31 UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Ta... 138 6e-31 UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA 138 7e-31 UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 T... 138 8e-31 UniRef50_A6VWX2 DEAD/DEAH box helicase domain protein n=2 Tax=Ma... 138 8e-31 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 138 8e-31 UniRef50_C5LVK1 DEAD box ATP-dependent RNA helicase, putative n=... 138 8e-31 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 138 8e-31 UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE 138 8e-31 UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 T... 138 8e-31 UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II p... 138 8e-31 UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma fl... 138 9e-31 UniRef50_A0LD66 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 138 1e-30 UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2... 138 1e-30 UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Cory... 138 1e-30 UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Ta... 138 1e-30 UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Ca... 137 1e-30 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 137 1e-30 UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 137 1e-30 UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 137 1e-30 UniRef50_B3RW01 Putative uncharacterized protein n=1 Tax=Trichop... 137 1e-30 UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rh... 137 1e-30 UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 137 1e-30 UniRef50_A5FFZ1 DEAD/DEAH box helicase domain protein n=6 Tax=Ba... 137 2e-30 UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 137 2e-30 UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Tryp... 137 2e-30 UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 137 2e-30 UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micr... 136 2e-30 UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorh... 136 2e-30 UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, s... 136 2e-30 UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteri... 136 2e-30 UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=ce... 136 2e-30 UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=u... 136 3e-30 UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 136 3e-30 UniRef50_A8IYU1 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 136 3e-30 UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intes... 136 3e-30 UniRef50_UPI0000D8BB48 WW domain-binding protein 11 (WBP-11). n=... 136 3e-30 UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus... 136 3e-30 UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdema... 136 3e-30 UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=St... 136 4e-30 UniRef50_Q22MC1 Type III restriction enzyme, res subunit family ... 136 4e-30 UniRef50_A4S0C2 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 135 4e-30 UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinom... 135 5e-30 UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly si... 135 5e-30 UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacter... 135 5e-30 UniRef50_B4RYM4 ATP-dependent RNA helicase, DEAD box family prot... 135 6e-30 UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Sacchar... 135 6e-30 UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-... 135 6e-30 UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospir... 135 6e-30 UniRef50_B8LEZ1 Predicted protein (Fragment) n=8 Tax=Eukaryota R... 135 6e-30 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 134 7e-30 UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosa... 134 8e-30 UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichop... 134 8e-30 UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens ... 134 8e-30 UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma ... 134 8e-30 UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 134 9e-30 UniRef50_P90897 Protein F58G11.2, partially confirmed by transcr... 134 1e-29 UniRef50_A8QEG6 DEAD/DEAH box helicase family protein n=1 Tax=Br... 134 1e-29 UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteob... 134 1e-29 UniRef50_Q3LBZ8 Superfamily II DNA and RNA helicase (Fragment) n... 134 1e-29 UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Ac... 134 1e-29 UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Para... 134 1e-29 UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1... 134 1e-29 UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarin... 134 1e-29 UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So c... 134 1e-29 UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fu... 134 1e-29 UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Ta... 134 1e-29 UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgrou... 134 1e-29 UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR 134 1e-29 UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA 134 1e-29 UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 T... 134 2e-29 UniRef50_A2DP01 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 133 2e-29 UniRef50_Q5KDK3 ATP-dependent RNA helicase ROK1 n=2 Tax=Filobasi... 133 2e-29 UniRef50_Q07886 Probable ATP-dependent RNA helicase Dbp45A n=16 ... 133 2e-29 >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 422/670 (62%), Positives = 542/670 (80%), Gaps = 2/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS +V+QVVRPTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMS-PKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + ++ PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLRELFI 670 ++ +L+ + Sbjct: 665 EILRLKAQML 674 >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 445/671 (66%), Positives = 538/671 (80%), Gaps = 6/671 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP + Sbjct: 15 DSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPAL 74 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLAPNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQ Sbjct: 75 VLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQ 134 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY Sbjct: 135 MRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R+D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RF Sbjct: 195 TRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRF 254 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G Sbjct: 255 TVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMG 314 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE L Sbjct: 315 FCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENL 374 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G VV+QVVRPTGL+DP Sbjct: 375 VGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTGLIDP 433 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDID Sbjct: 434 AIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDID 493 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 494 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 553 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AAR++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ Sbjct: 554 AARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIID--- 610 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + G R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 611 GVYGGDVERDG--RSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 371/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+ Sbjct: 12 DNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTL 71 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I++ Sbjct: 72 VIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDK 131 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ Sbjct: 132 LRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQF 191 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + Sbjct: 192 ERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHL 251 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 ++P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+G Sbjct: 252 VLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMG 311 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ L Sbjct: 312 YTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKML 371 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V+YGFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ VV+Q++RPTGLLDP Sbjct: 372 VDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTET-VVEQIIRPTGLLDP 430 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI Sbjct: 431 EVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIK 490 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGR Sbjct: 491 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 550 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D++++ Sbjct: 551 AARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISIT- 609 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + E M+ K Q+ I +L+ M + A+ L+FE AAQIRD Sbjct: 610 ---------KTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDM 660 Query: 662 LHQLREL 668 + +L+ + Sbjct: 661 VLELKSM 667 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 411/669 (61%), Positives = 509/669 (76%), Gaps = 2/669 (0%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA ++ A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K V D + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSV-DEVRFI 598 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +A + + G++ + S + L+ + ELE M + A L+FE AA++RD Sbjct: 599 TRVADARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRD 658 Query: 661 QLHQLRELF 669 QL ++R Sbjct: 659 QLFEVRTAL 667 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 380/695 (54%), Positives = 498/695 (71%), Gaps = 32/695 (4%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+V Sbjct: 2 SEFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ + Sbjct: 62 MAHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDML 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 R SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY Sbjct: 122 RHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND RG FR++G+V++I PA +D +R+E F +E+E + L DP+TG+I++++ Sbjct: 182 RNDLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSALR 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+GY Sbjct: 241 VYPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 C+GIENYSR L+GR GEPP L DY D LLVVDESHVT+PQI GMY GDRARK+ L Sbjct: 301 CNGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVL 360 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG---------------- 405 V++GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S Sbjct: 361 VDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFY 420 Query: 406 ----GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLTK 456 G V++QV+RPTG++DP + VRP A QVDDLL EI R ++ RV+VTTLTK Sbjct: 421 VQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTK 480 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 RMAEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEVS Sbjct: 481 RMAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVS 540 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 LVAILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q Sbjct: 541 LVAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQL 600 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 +YN +H ITP+ + KK + + I++ + +P+ P+ I Sbjct: 601 QYNRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLEKAFQA-AQEIPLSEIPEL----I 655 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 +LE M + A+NLEFEEAAQ+RD++ +LR+ + Sbjct: 656 GQLELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLG 690 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 374/692 (54%), Positives = 479/692 (69%), Gaps = 28/692 (4%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V+ Sbjct: 13 PFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVM 72 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++R Sbjct: 73 VQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLR 132 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY R Sbjct: 133 HSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVR 192 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V I Sbjct: 193 NDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYI 251 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GYC Sbjct: 252 FPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYC 311 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLVE Sbjct: 312 NGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVE 371 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V+Q++RPTGL+DP + Sbjct: 372 HGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQV 430 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT+ Sbjct: 431 VVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTL 490 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 491 RRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAA 550 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 551 RNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARE 610 Query: 604 AKTKAK---GRGKSRPI-----------------------VEPDNVPMDMSPKALQQKIH 637 A G G + P P + K L I Sbjct: 611 DADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIE 670 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 671 QMSQQMHQAAADLQFELAARLRDEVGELKKEL 702 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 356/698 (51%), Positives = 476/698 (68%), Gaps = 28/698 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 +PF++ + F P GDQP AI L +G+ +D L +QTLLGVTGSGKTFT+AN+I Q+ T Sbjct: 38 QQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTT 97 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E Sbjct: 98 LIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVE 157 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++Q Sbjct: 158 KLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQ 217 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 218 YDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPIRVSFFGDEIEMIAEFDEVTGDTLSQYDA 276 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ + Sbjct: 277 LPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETM 336 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK T Sbjct: 337 GFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKIT 396 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S VV+QV+RPTGLLD Sbjct: 397 LVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQN-VVEQVIRPTGLLD 455 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 456 PRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDT 515 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+G Sbjct: 516 ATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMG 575 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ + Sbjct: 576 RAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFI 635 Query: 601 QN-----IAKTKAKGRGKSRPIVEPDNVPMD--------------------MSPKALQQK 635 Q +K + G + DN M + + + Sbjct: 636 QAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKI 695 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L+ M+ + +++FE AA++RDQ+ +++ + S Sbjct: 696 LGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLS 733 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 370/681 (54%), Positives = 484/681 (71%), Gaps = 15/681 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT++ Sbjct: 34 NKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 93 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 L+ NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I+++ Sbjct: 94 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKL 153 Query: 123 RLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RL+AT A+L R DVVVV+SVS IYG+G+P + ++ + G + LRRL + Y Sbjct: 154 RLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSLY 213 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ + Sbjct: 214 VRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDAY 272 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 IYP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM ELG Sbjct: 273 KIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMRELG 332 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +CSGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK L Sbjct: 333 HCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNL 392 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VEYGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLDP Sbjct: 393 VEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLDP 452 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IIEVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+D Sbjct: 453 IIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDVD 512 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR Sbjct: 513 TLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 572 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV-----DI 596 AARNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K Sbjct: 573 AARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAGT 632 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPM--------DMSPKALQQKIHELEGLMMQHAQ 648 ++ + RP VE ++ M MS L++ I + LM + A+ Sbjct: 633 EGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAAK 692 Query: 649 NLEFEEAAQIRDQLHQLRELF 669 L+F EAAQ RD++ ++ EL Sbjct: 693 KLDFIEAAQYRDEVLKMEELL 713 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 364/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDEDG-LRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD-------I 596 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K+ + + Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 597 LALGQNIAKTKAKGRGK---------------------SRPIVEPDNVPMDMSPKALQQK 635 +G + ++ + K R P D KA + K Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +LE M + A L+FEEAA+IRD + L Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSL 730 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 351/666 (52%), Positives = 471/666 (70%), Gaps = 6/666 (0%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L R DV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG--- 600 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607 Query: 601 -QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + ++ V+ + +P+ + EL M + A +E+E+AA +R Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667 Query: 660 DQLHQL 665 D++ +L Sbjct: 668 DEIARL 673 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 537 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 363/673 (53%), Positives = 476/673 (70%), Gaps = 6/673 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 + F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P + Sbjct: 6 EQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVL 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +++ NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE+ Sbjct: 66 LISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIER 125 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL AT ++L R DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L Sbjct: 126 LRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLH 185 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + R+D G FRVRG+VID+ P ++ ALRVE F +E+ERL LFD TG+I Sbjct: 186 FVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEY 244 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ EL Sbjct: 245 AFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKEL 304 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GYCSGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK Sbjct: 305 GYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTI 364 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLD Sbjct: 365 LVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLD 424 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P I VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I Sbjct: 425 PEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEI 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q G Sbjct: 485 KSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAG 544 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L Sbjct: 545 RAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTT 604 Query: 601 ----QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + + R +++ + + L EL M + A+++EFE+AA Sbjct: 605 GVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAA 664 Query: 657 QIRDQLHQLRELF 669 +RD++ +L + Sbjct: 665 YLRDEVTKLEDAA 677 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 530 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 346/666 (51%), Positives = 459/666 (68%), Gaps = 5/666 (0%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+V Sbjct: 2 KEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 ++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I +M Sbjct: 62 ISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRM 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 122 RLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ T Sbjct: 182 RNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELT 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+GY Sbjct: 241 VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 C GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L+ Sbjct: 301 CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI 360 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 ++GFRLP A DNRPLK EFEAL Q +++SATPG E +S +V+Q++RPTGLLDP Sbjct: 361 DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIRPTGLLDPC 419 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I+T Sbjct: 420 IEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIET 479 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IGRA Sbjct: 480 IERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRA 539 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Q Sbjct: 540 ARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQE 599 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 + K A+ + +V + K + + L M A+ L FEEAA IRD++ Sbjct: 600 VKKDAARVQVAPLLRAADADVRTHAARK---KMVQALRLHMKVCARELRFEEAALIRDKI 656 Query: 663 HQLREL 668 QL+ Sbjct: 657 LQLQRQ 662 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 345/666 (51%), Positives = 464/666 (69%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P SD LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYSDAT-LRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S VV+Q++RPTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRR-VVEQLIRPTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I DN LE LM + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMDN--------------EALEKLMWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 314/665 (47%), Positives = 448/665 (67%), Gaps = 11/665 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 S+ E D M + K + Q + + M Q A+ +FEEA +IRD Sbjct: 601 -------ILSEDHSKYYGEKDLSQMKHNKKFIDQMVRK----MTQLAKANKFEEAIEIRD 649 Query: 661 QLHQL 665 L ++ Sbjct: 650 YLIEI 654 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 350/717 (48%), Positives = 469/717 (65%), Gaps = 68/717 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+V++ Sbjct: 4 FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ ++++ L Sbjct: 64 HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + R Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + +T + Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG+C Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK LVE+ Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV--------------- 409 GFRLPSALDNRPLKF EF Q +Y SATPG +EL D Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423 Query: 410 -----------------------------DQVVRPTGLL-----------DPIIEVRPVA 429 D R T L+ +P I +RP+ Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+EI+ Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++NG+ Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ Q K A+ Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRS-------EQGQLKLYAE 656 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 657 DDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 323/669 (48%), Positives = 431/669 (64%), Gaps = 17/669 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ D LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHE---- 600 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + + + QKI EL+ M + A+ E+E AAQ R Sbjct: 601 ----DLSGHDYKQNAELYAAKASKNEY------NQKIKELKKKMEEAAKKREYEVAAQYR 650 Query: 660 DQLHQLREL 668 D + +L + Sbjct: 651 DMIVELEAI 659 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 280/606 (46%), Positives = 385/606 (63%), Gaps = 23/606 (3%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ-RAILRRLAELQYAR 183 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + + Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 184 N--DQAFQRGTFRVRGE------VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 D F+RGT++ ++++P + +R+E V ++ D + + + Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEF--ASVGDGAVKDGMVVRAI 237 Query: 236 ST--------IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + I+P H+VT +R+ QA I+EEL R + LL K +E RL Sbjct: 238 QEGTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRLQ 297 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTI 344 QR D+ MM E G+CSG ENYSR L+GR G PP TL DY+ D LL+VDESHVT+ Sbjct: 298 QRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVTL 357 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 PQ+ MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL K+ Sbjct: 358 PQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGKA 417 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V+ ++RPT + DP IEVR Q+D+LL+E+R R +R LV TLTKR AEDL+ Sbjct: 418 EYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLSS 477 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L+AD Sbjct: 478 YLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNAD 537 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 EGFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN ++ Sbjct: 538 SEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNNC 597 Query: 585 TPQGLN 590 + N Sbjct: 598 VMKSTN 603 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 256/614 (41%), Positives = 357/614 (58%), Gaps = 43/614 (7%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 + + F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ Sbjct: 71 NGVRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVV 130 Query: 64 APNKTLAAQLYGEMKEFFPEN-AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 PNKTLAAQ+ E++ + E+ VE FVS++ Y PE+Y S+ + EK ++++ ++ + Sbjct: 131 VPNKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDAL 188 Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGM---IIDQRAILRRL-A 177 R AT+A++E + VVVASVS +YGLG P Y+ L + +G + +L Sbjct: 189 RHRATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD 248 Query: 178 ELQYARN--DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP----LT 231 +L Y R +RG ++ A DD + ++ +E D Sbjct: 249 DLLYERVMPYMDIERGQYKTTA-------APDDDNCFTITIWPPYLES--ALDVRVRGDD 299 Query: 232 GQIVSTIPR-------FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 G +V+ R TI+P+ HY+TP ER+ +A+ IK EL + K L +E Sbjct: 300 GVVVACEARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEAD 359 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP--------ADGLLV 336 RL QRT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV Sbjct: 360 RLEQRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLV 419 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 DESHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATP Sbjct: 420 ADESHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATP 479 Query: 397 GN----YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 G+ + KS +VD VVRP+G+LDP + V Q++ L + ++A I ER LV Sbjct: 480 GDIETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVC 539 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 LTK EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+ Sbjct: 540 VLTKADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDL 599 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P VSLVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR Sbjct: 600 PSVSLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRR 659 Query: 573 EKQQKYNEEHGITP 586 KQ K+N ++ + P Sbjct: 660 VKQHKHNVDNNLVP 673 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 365/661 (55%), Gaps = 85/661 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMV 62 L + F P+GDQP AI + L +D L G TG+GKTF +ANVI +PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID---QRAILRRLAE 178 +R AT+A++E +VVVVASVS +YG+G P Y+ L L + A+ RL E Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTE 248 Query: 179 -LQYA-------------RNDQAFQR---GTFRV-----RGEVID---IFPAESDDIALR 213 L Y +D R G + RG + ++P +D L+ Sbjct: 249 GLLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPY-EDSPLQ 307 Query: 214 VELF--DEEVERLSLFDPL-TGQ--------IVSTI----------PRFTIYPKTHYVTP 252 +L V L P T + ++ + R T++P+ H++TP Sbjct: 308 FDLDKEGRLVGFLRT--PQGTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITP 365 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 ER+ A I EL R L N +E +RL QRT D+ ++NELG+C G E+YSR Sbjct: 366 PERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRH 425 Query: 313 LSGRGPGEPPPTLFDYLP-------------------------ADGLLVVDESHVTIPQI 347 L GR GEPP TL DYL LLV DESHV +PQ+ Sbjct: 426 LGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQL 485 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSATPGN E E Sbjct: 486 RAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSR 545 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV LTK EDL YL Sbjct: 546 MVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLN 605 Query: 468 EH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 606 EIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVP 665 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRREKQ+ +NE +GI Sbjct: 666 GFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIV 725 Query: 586 P 586 P Sbjct: 726 P 726 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 354 bits (909), Expect = 5e-96, Method: Composition-based stats. Identities = 118/655 (18%), Positives = 235/655 (35%), Gaps = 54/655 (8%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L+ Q + L + G Q + G++ S +T +A + L P V+ + Sbjct: 6 LSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHS 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++ +++ P+ V F P+++ + + + + RL Sbjct: 66 IQQARRIAEDLQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLAQRLDV 112 Query: 127 TKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V VV ++ A+ L P + + L VG ++ I RL L Y R Sbjct: 113 LSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTP 172 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G + +RG ++D++P + + R+E FD+E++ + LFD T + R+ P Sbjct: 173 MVEAPGQYSLRGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGP 231 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + E + Q E+++E A R+ LL++ RL + LE ++E + G Sbjct: 232 AREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEG 291 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E + F +LF YL + ++ DE + L+E G Sbjct: 292 LEQFQNFFY-----PDQVSLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVHLLEAG 346 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LP+ + + E LA + A ++V + + Sbjct: 347 SVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKKI---------ERVTVEDTIQFNAKNM 397 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 P ++D L E++ VL+ + + + + L ++G + + Sbjct: 398 HPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG------- 450 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I +L G V VG+ L G ++ + LV I D + G + R + Sbjct: 451 --IDAELHPGT--VAVGVGQLEAGFELVQARLVLITDLEIFGREKRP-----RKPRKSAR 501 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + D + R +K + G++K + I G++ Sbjct: 502 EGQRIDSFVDLALGDYVVHVNHGIGRYMGVEK------LEVGGVHKDYLVIRYAGEDRLY 555 Query: 606 TKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V + V + + +++ + + A +L AA+ Sbjct: 556 VPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAAR 610 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 30/294 (10%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 + +SATP L S + D + T D V +L+ E +R+ Sbjct: 781 KENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRE 840 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V + + L R + H + + +++ D GE+D+L Sbjct: 841 LNRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDIL 900 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P V+ + + AD G + L Q GR R+ + Y T Sbjct: 901 VCTTIIETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNR---LAYA-FFTYR 952 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVE 619 K + E +R + E G G + D+ G N+ + G + Sbjct: 953 KDKVLTEVAEKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHG--------Q 1001 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQLR 666 +V D+ + L++ I EL+G + A F + D L +++ Sbjct: 1002 MASVGFDLYCRLLEEAIQELKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQ 1055 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 6/199 (3%) Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + A + Q + A P Sbjct: 578 YRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESKPGYAYSADTPWQKEFEEAFPYEET 637 Query: 401 LEKSGGDV-VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT---- 455 +++ V + +D ++ + + + + ++V + T Sbjct: 638 PDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILA 697 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL-REGLDMPE 514 ++ E + RV L E+ + L+ GE D+++G + L + + Sbjct: 698 QQHYNTFRERFSGYPVRVDVLSRFRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKD 757 Query: 515 VSLVAILDADKEGFLRSER 533 + L+ I + + G E+ Sbjct: 758 LGLLIIDEEQRFGVAHKEK 776 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 120/550 (21%), Positives = 209/550 (38%), Gaps = 44/550 (8%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAP 65 + KP PE I L GLE+ Q + G++GS ++ A + P +V+ P Sbjct: 1 MRGLLKPLQAVPEFI-GLIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTP 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + A Q+ E+ P AV+ F P + + ++ +E RL Sbjct: 60 GEREACQMADEIAGLLPGAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQ 106 Query: 126 ATKAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++++ VV+A A + L P ++ + L L G + ++RRL + Y R Sbjct: 107 VLESLVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I I Sbjct: 167 GLVEGRGQFCLRGGILDVFPM-TAHRPVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIG 225 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + +K+E A+ L + + ++L ++ E GY + Sbjct: 226 AARELIVEDKAWENFRRALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFN 283 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIEN+ + T+ DYLPA ++VD+ I + R L+ Sbjct: 284 GIENFLPYFY-----REVITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSR 338 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G LPS + L+ + S+ D V P Sbjct: 339 GRVLPSQFLAYAGWSDIQGGLSRHPVIYSSLLPRQ---------PDFVRPQQTFSLPWKA 389 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + L EIR ++ + A+ + L++HG Y S V Sbjct: 390 MPSFLGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASSPEGHV- 448 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R G +VLV + L G ++P+ L + + D G R + + +GR A Sbjct: 449 --------RSG--NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAP 498 Query: 545 NVNGKAILYG 554 V+ + Y Sbjct: 499 FVDLRVGDYV 508 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 113/646 (17%), Positives = 232/646 (35%), Gaps = 61/646 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F + + +E+ ++ + G S K I + + +V+ N A Sbjct: 4 FTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++K + P+ D I + R+ K + Sbjct: 63 KEIYEDLKLYDRN---------------VYLYPAKDIIFYSADIHGNAIVRERMRILKNL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LER+ + VVA++ P YL ++ + I+ + +L L Y R Q Sbjct: 108 LERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVEN 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + IYP + Sbjct: 168 PGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E + + ++ E L K E R+ Q + E + L +++Y Sbjct: 227 ILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSY 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 RF + + FDY D ++ DE + + ++ +E G+ L Sbjct: 287 IRFFY-----DKTCSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGYIL 341 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 PS +D E L+ + + +T + ++ + VD V+ V P Sbjct: 342 PSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAAKKKVDITVKS---------VNPY 392 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L+ +++ RV++ + ++ A L + L ++ Y ++ Sbjct: 393 NNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIYS---------EDV 443 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R GE ++V + G + P + LV I ++D G + ++ + G Sbjct: 444 DRIPVKGE--IVVMHGSVHRGFEYPLIKLVIISESDIFGAEKKKKKKK-------PSYEG 494 Query: 549 KAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K I + D Y I ++K + + G + Sbjct: 495 KQIQSFTDLNIGDY------VVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVLYIL 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 A G + D ++ + +++G + + A+ L Sbjct: 549 ATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKEL 594 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 145/464 (31%), Gaps = 51/464 (10%) Query: 215 ELFDEEV--ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 E+F E ++L D T + + + + + I+ A Sbjct: 621 EMFPYEETDDQLRAID-DTKRDMESKKIMD-----RLICGDVGYGKTEIAIRAAFKAISD 674 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q + M + L + L Sbjct: 675 GKQVVFLVPTTILAQQHYNTFSQRMMNFPISVDM------LCRFKTPAQQKKTLENLKKG 728 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L ++ +H + + + +G + + + + Sbjct: 729 QLDILIGTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDID--------VLTL 780 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLV 451 +ATP L S + D V +D + V D+++ E I + A +V Sbjct: 781 TATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYY 840 Query: 452 TTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +++T + V + H + + +I+ + GE DVLV ++ G Sbjct: 841 VHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETG 900 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 LD+ V+ + I +AD+ G + L Q GR R+ + + K + E Sbjct: 901 LDISNVNTMIIDNADQLGLSQ----LYQLRGRVGRSNR---TSFAFLM-YKRDKLLKEVA 952 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 +R + K E G G + D+ G + + V D+ Sbjct: 953 EKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNLLGAQQSG-------HMEAVGYDLYC 1002 Query: 630 KALQQKIHELEGLMM-----QHAQNLE---FEEAAQIRDQLHQL 665 K L + L+G + + +++ F + I++++ +L Sbjct: 1003 KMLNDAVKGLKGEISDEDTFDTSIDMDMDAFIPSTYIKNEMQKL 1046 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 111/645 (17%), Positives = 244/645 (37%), Gaps = 59/645 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F ++ + I+ +EE L+ G+T S K ++ + +V+AP++ A Sbjct: 2 FTRQIEELKEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++ F NA + P + K + ++ + RL K + Sbjct: 62 RKIYEDLYSFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKL 107 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E VV S+ A G P DL+ K +G+ ++ +++ L + Y R Sbjct: 108 SEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEG 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+F +++ R+ELFD+E++ + FD +T + + I + I+P T + Sbjct: 168 KGQFSVRGGIIDVFSP-TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEF 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E I + + + L + + ++ + ++L Q+ + +E + E I Sbjct: 227 IAGAEHIKKGISAVSNYLNSYLSKIKKSKSGIA-EKLQQKFEEIMEEITESKRVENIYEL 285 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 286 IDYFY-----DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + + + + T E +V+ V R + Sbjct: 341 EQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFH 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ +++ +VL+ + + A L + L+ + + Sbjct: 392 GNMDILVDDLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSE 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D++ G V++ + +G + + I D + G + R + N Sbjct: 443 YDIQKG--QVVIYPASVSKGFEYVDAKFAVISDGEIFGQTK-------RRKRTVKIKNAD 493 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + S + + E +K I G+ + + I+ G + Sbjct: 494 KIKSFTELEIGSYVVHVNYGIGKYEGIEK------IKVDGIVRDYLKIIYAGGDTLFVPV 547 Query: 609 KGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 + + V P + P ++ + + + + A++L Sbjct: 548 EQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDL 592 Score = 43.3 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + L + A ++V T + + E +E ++ L E Sbjct: 656 YGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKE 715 Query: 485 RMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 + +II++L G D++VG + LL+ + ++ L+ I + + G + E+ Sbjct: 716 QSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEK 765 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 121/673 (17%), Positives = 245/673 (36%), Gaps = 71/673 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +P + PE I L+ GL Q + G++ + K+F IA ++ +++ +++ + A Sbjct: 13 LQPLINTPEFID-LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEA 71 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A L ++K P+ V F P+ + + ++ I + R+ +++ Sbjct: 72 AGLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRMEVLESL 118 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + V++A V A+ P + L L VG + ++ L E Y R + Sbjct: 119 CRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVES 178 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG ++DI+P + +RVE FD+EV+ + +F+P T + + + I+P Sbjct: 179 HGQFSVRGGILDIYPITGIN-PVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREM 237 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V + +A + + +E RR+ L + + L R + L+ +++ Y IE Y Sbjct: 238 VVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNL-SRCEEVLDNISQAKYFDSIEQY 296 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + TL +Y+ A+ L++VDE + R L++ G LP Sbjct: 297 LPYFYDEDI-----TLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMKAGRVLP 351 Query: 370 SALDNRPLKF-EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + IY S P L +S V V ++ Sbjct: 352 GQFKGYTDWAGIHKQITGFRAIYFSFLPRQASLWRSCNTVNFPVKT----------MQNF 401 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +V+ L EIR V++ A L L ++ YL D+ + + Sbjct: 402 MGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSEYPHLNV 461 Query: 489 IRDLRL---------GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 D+ G +++ L G ++ L I + + G + Q + Sbjct: 462 QEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPSVQRQRV 521 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 K L+ + T + R + + + D+ Sbjct: 522 -------QDKMELFAELKTGDYVVHVNHGIGRYDGV-------------VQLTIGDV--K 559 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + A P + + + + + K+ L G ++ +++ Sbjct: 560 RDYLLVKYAGEDKLYIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKS-------KVK 612 Query: 660 DQLHQLRELFIAA 672 + + ++ + +A Sbjct: 613 EAVKEMAQELLAL 625 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/425 (16%), Positives = 132/425 (31%), Gaps = 43/425 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E + Y Sbjct: 675 PMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKERFAK--YPV 732 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 I SRF++ R + L + +V +H + + + Sbjct: 733 NIAMLSRFITARRQRQIVQELLL----GQVDIVIGTHRLVQDDIKFKDLGLVVVDEEQRF 788 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + ++ATP L S V D + T D I Sbjct: 789 GVTHKEKLKQLRQNVD--------VLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPV 840 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + ++ E IR+ +V + + +L+ H + Sbjct: 841 QTYVLEEEPVIVREAIRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMK 900 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++ D +FD+L+ ++ GLD+ V+ + + DAD G + L Q GR Sbjct: 901 EDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQ----LYQLRGR 956 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y T K + E +R + E G G + D+ G Sbjct: 957 VGRTNR---LAYAY-CTFRGDKVMSELAEKRLSAVREFTEFG---SGYKIAMRDLEIRGA 1009 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL----EFEEAA 656 NI + G V D+ + L++ + E +G ++A+ + E A Sbjct: 1010 GNILGPEQHG--------HIAAVGFDLYCRLLEEAVLEAKG--GENAKPIETLVELPVTA 1059 Query: 657 QIRDQ 661 I D+ Sbjct: 1060 YIPDE 1064 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 111/661 (16%), Positives = 248/661 (37%), Gaps = 70/661 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + G++ + G++ S +++ I V +P +++ + Sbjct: 4 DGLMEPIRKSSEFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDV 63 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + P+ Y P+ + +++ + RL + Sbjct: 64 EARKLYEDLCFYLPQ---------------VYYFPTKEVVFYNIDAISGDLRWERLKVIR 108 Query: 129 AMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ML +++ V ++ +LY + ++VG +D + I +L + Y R + Sbjct: 109 EMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F +RG ++DI+ S + RVELF +EVE + F+ + + + + I+ Sbjct: 169 ERRGQFSIRGGIMDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + RERI +IKE+LA+ + L EN +++ T +LE + E I+ Sbjct: 228 EIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESID 287 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ + + DY + ++VD+ ++ +Y + +E G Sbjct: 288 SFLPYFYEH-----TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP + E + + I + +V+ I + Sbjct: 342 LPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLIVNFTQ---------ITLNN 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ L+ EI+ + + + ++L+ + T+ E L + L ++G Y + Sbjct: 393 YQGKLELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RD 442 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ +++ GE + G L +G + PE+ + I D + G + R I+ + + Sbjct: 443 VVNEIKPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAK--RKNIRKTNKKGTSK- 497 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 I + + HGI G+ K + + G + Sbjct: 498 -----------------IKSFTELKPGDFIVHVNHGI---GVYKGIKQLELQGHKKDYLE 537 Query: 608 AKGR---GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ + D V + + KI++L + + ++ + L + Sbjct: 538 LVYECEDKLYVPVEQLDMVQKYIGSEGKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIK 597 Query: 665 L 665 L Sbjct: 598 L 598 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 106/309 (34%), Gaps = 30/309 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + +SATP L S V D V T + V Sbjct: 758 EQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYV 817 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 D L+ + + + + +V +++ Y+ + +V H + E Sbjct: 818 VEYNDQLIRDAVLRELSRGGQVYFVYNRVENIKEMASYIAKLIPEGKVAVAHGQMQEREL 877 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 II D ++D+LV ++ G+D+ V+ + I DADK G + L Q GR R Sbjct: 878 EGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQ----LYQLRGRVGRT 933 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIA 604 I Y + K + E +R K K E G G + D+ G N+ Sbjct: 934 NR---IAYCYL-SYRKDKVLKEVAEKRLKVIKEFTELG---SGFKIALKDLEIRGAGNMM 986 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA-------AQ 657 + G V D+ + L+ I ++G + + E Sbjct: 987 GSSQHG--------HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTVELKVDAYIPDNY 1038 Query: 658 IRDQLHQLR 666 I +++ ++ Sbjct: 1039 IENEVQKIE 1047 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 117/653 (17%), Positives = 234/653 (35%), Gaps = 55/653 (8%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L G + G S K + + P +V+ + T A ++Y Sbjct: 2 ELQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYD 61 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + F + P+ D + + R++ + ++E + Sbjct: 62 DFRNFTKQ---------------VWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQG 106 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID +RL + Y R Q G F Sbjct: 107 GVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDIFP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++ Sbjct: 167 IRGGIIDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKK 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 226 QLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 Query: 315 GRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + +Y P ++ +DE + + R +E G+ LP Sbjct: 286 -----PDTVSFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQT- 339 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 EE A + + V T + + G V + V + Sbjct: 340 ELLYPVEEVMARVQRPLTVMLTGLD--QKLPGMKVNHKFSIDVKN------VNSYQNSFE 391 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT------VERME 487 L+ ++ + RV++ + ++ A L L E+G R E + Sbjct: 392 ILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKD 451 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ GE ++V L G + P + V I + D G + ++ +T N Sbjct: 452 AHPKVKPGE--IMVTYGSLHRGFEYPLLKFVYITEGDMFGVEKKKKRRKKT------NYQ 503 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 GKAI +++ E K + E + + + D Sbjct: 504 GKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIEYGD-----GGNLYLP 558 Query: 608 AKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQ 657 A + D ++ + ++G + + A++L AA+ Sbjct: 559 ATRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYAAR 611 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 140/431 (32%), Gaps = 49/431 (11%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + D + +I+ + + + ++ A + Sbjct: 643 DAIDAVKT-DMESRRIMDRL-----------ICGDVGYGKTEVALRAAFKAVQDSKQVVY 690 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q ++ M + + ++ SRF P TL D L + +V Sbjct: 691 LVPTTILAQQHYNTFVQRMKD--FPVRVDMLSRF---CTPARQKRTLED-LRKGMVDIVI 744 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G + + ++ATP Sbjct: 745 GTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKQL--------KENVDVLTLTATPIP 796 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L S + D V +D V ++++ E I + A N +V Sbjct: 797 RTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVT 856 Query: 458 MAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 +++ ++ H + E I+ D GE DVLV ++ GLD+P Sbjct: 857 DIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNA 916 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I DAD+ G + L Q GR R+ Y + K + E +R + Sbjct: 917 NTMIIHDADRMGLSQ----LYQLRGRVGRSNR---TSYAFLM-YRRDKLLKEEAEKRLQA 968 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + E G G+ + D+ G N+ + G + V D+ K L + Sbjct: 969 IREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HMEAVGYDLYCKMLNE 1017 Query: 635 KIHELEGLMMQ 645 + L+G Sbjct: 1018 AVLALKGEKPD 1028 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 118/685 (17%), Positives = 233/685 (34%), Gaps = 85/685 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAP 65 + + + L + L+ G + G S K + + +V+ Sbjct: 1 MENPLLEL----QEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTY 56 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + T A ++Y +++ F P+ D + + R++ Sbjct: 57 DDTRAKEIYDDLRSFT---------------SRVWLYPAKDLLFYSADIHGNLMARQRIA 101 Query: 126 ATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 + ++E R+ VVV ++ + L + + + G +ID RL + Y R Sbjct: 102 VLRRLMEDREGVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERV 161 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Q G F +RG ++DIFP ++++ +R+EL+D+EV+ + FD + + V + TIY Sbjct: 162 AQVDGMGQFSIRGGIVDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIY 220 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V +++ + +++E K L E +K E R+ ++E Sbjct: 221 PAAEVVLSADQLAAGIRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIG 280 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G++ Y R+ + +Y P ++ +DE + + R +E Sbjct: 281 GLDAYIRYFC-----PDTVSFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLE 335 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G+ LP E A + V T + + G V + Sbjct: 336 KGYLLPGQT-ELLYPAAEILARMQKPYAVMLTGLD--QKLPGMKVNQKFSIDVKN----- 387 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V + L+ ++ + RV++ + ++ A L L E+ R Sbjct: 388 -VNSYQNSFEILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGES 446 Query: 484 -----------------ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +R +R GE +LV L G + P + V I + D Sbjct: 447 GNAGGEGAGSADTGNPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMF 504 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI-T 585 G + + K T KAI +EEHG+ Sbjct: 505 GVEKKRKR--------------------RKKTNYQGKAIQSFTELSVGDYVVHEEHGLGI 544 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +G+ K D + I G P +++ +A + K+++L G Sbjct: 545 YKGIEKVERDKVIK-DYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEWN 603 Query: 646 HAQNLEFEEAAQIRDQLHQLRELFI 670 + ++R + ++ + Sbjct: 604 KTK-------TRVRGAVQEIARDLV 621 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 147/442 (33%), Gaps = 55/442 (12%) Query: 215 ELF-----DEEVERLSLF--DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ELF D++++ + D + +I+ + + + ++ Sbjct: 647 ELFPYDETDDQMDAIDAVKKDMESRRIMDRL-----------ICGDVGYGKTEVALRAAF 695 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + + Q ++ M + + ++ SRF P TL D Sbjct: 696 KAVQDSKQVVYLVPTTILAQQHYNTFVQRMKD--FPVRVDMLSRF---CTPARQKRTLED 750 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +V +H + + + +G + + Sbjct: 751 -LRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKHL--------KENV 801 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L S + D V +D V ++++ E I + A N Sbjct: 802 DVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARN 861 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V +++ ++ H + E I+ D GE DVLV Sbjct: 862 GQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTT 921 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+ + + I DAD+ G + L Q GR R+ Y + K Sbjct: 922 IIETGLDISNANTMIIHDADRMGLSQ----LYQLRGRVGRSNR---TSYAFLM-YKRDKL 973 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 + E +R + + E G G+ + D+ G N+ + G + V Sbjct: 974 LREEAEKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HMEAV 1022 Query: 624 PMDMSPKALQQKIHELEGLMMQ 645 D+ K L Q + L+G ++ Sbjct: 1023 GYDLYCKMLNQAVLALKGETLE 1044 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 244/652 (37%), Gaps = 66/652 (10%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 + + + + GL +GL Q L G++GS ++ + + + +P ++ N A ++ Sbjct: 8 IKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVT 67 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ + +V + P ++ + A + + RL + Sbjct: 68 DDLTSLLEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGE 114 Query: 135 DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 +VVA V+AI + P +++ + + VG I+ + RL E+ Y R+D G F Sbjct: 115 APIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +IDI+P S++ +R+ELFD EV+ + F+ + + T+ I P + Sbjct: 175 SIRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRP 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 E +AME+I LAA K L + +++ L D E ++E + Y + Sbjct: 234 EEKARAMEKIDSGLAASLKKLKADK---QKEILHANISHDKERLSEGQTDQELVKYLSYF 290 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P +L DY P + LL++DE + + + L+E G L Sbjct: 291 Y-----EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHD--I 343 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 F++ A + + + + S ++V+ R +++ Q++ Sbjct: 344 RLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGR---------QMQSFHGQMN 394 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L E+ + N V+ K + L+ L ++ S L Sbjct: 395 VLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKK----------ALV 444 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+ ++ G L+ G ++P + L I + + ++ Q + A R Y Sbjct: 445 QGQVYIMEG--ELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAER-----IKSY 497 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I + + E +GI LN Sbjct: 498 SELQIGDYVVHINHGIGKYL-GIETLEINGIHKDYLNIH--------------YQGSDKL 542 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D V + + + K+++L G + + I D L +L Sbjct: 543 YVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKL 594 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/422 (17%), Positives = 127/422 (30%), Gaps = 38/422 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + E + Sbjct: 644 PMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINI 703 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G LS + L + +V +H + + + + Sbjct: 704 G------LLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRF 757 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + ++ATP L S V D V T + Sbjct: 758 GVTHKEKIKQI--------KANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V L+ E I + A +V E + + +V Y H + Sbjct: 810 QTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMT 869 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ GE DVLV ++ G+D+P V+ + + DADK G + L Q GR Sbjct: 870 ENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGR 925 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y T K + E +R + K E G G + D+ G Sbjct: 926 VGRSNR---VAYAYF-TYRRDKVLTEVAEKRLQAIKEFTELG---SGFKIAMRDLTIRGA 978 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG---LMMQHAQNLEFEEAAQI 658 + D+V D+ + L++ I E +G Q ++ E A I Sbjct: 979 GNLLGAQQHGF-------IDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEIDVELDAYI 1031 Query: 659 RD 660 + Sbjct: 1032 PE 1033 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 128/673 (19%), Positives = 252/673 (37%), Gaps = 76/673 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ G+ T+ G + S K + L + +A N Sbjct: 11 LIEPLFEIKEYTNVLENIKRGI-----PTTVTGPSESQKVHIACALCGHLGLKGIYIAYN 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A +++ ++ FF ++AV + PS + + + + R++A Sbjct: 66 EMQARKMFEDVSFFFGKDAV--------------FFPSKEIMLHDVEAKSYDSIYERINA 111 Query: 127 TKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 ++ +V S A+ L D L+ + ++++ +G ID ++L + Y R Sbjct: 112 LYRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVT 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + F VRG ++DIFP +D A+R+ELFD+EV+ + FD +T + V + TI P Sbjct: 172 TVEGKSQFAVRGGIVDIFPVNAD-TAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + P ME+I +L + K + N Q+L + D+E ++ Y +G Sbjct: 231 ARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAG 290 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ Y ++ E P + DY+ ++ L+ VDE +I + ++ +E G Sbjct: 291 MDRYIPYI-----IEKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENG 345 Query: 366 FRLPSALDNRPLKFEEFE--ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 L + D ++ T+Y + P + E+ ++V +++ Sbjct: 346 QLLAGSFDIFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKLL---------- 395 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L +I RV++ + TK E L E L YL Sbjct: 396 --NSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL------- 446 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 E RD++ GE V++ +L G + P + V + + G + R Sbjct: 447 --EEPHRDIQPGE--VVITHGVLNRGFEYPGIGFVVVSGKELFGQEKKT--------RRH 494 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 ++ GK I + KY + + + K + I Sbjct: 495 KSAKGKKISVFTDLN-----VGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQ------ 543 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + G P + D + + + K+ +L G + E ++ +L Sbjct: 544 ---YSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELI 600 Query: 664 QL---RELFIAAS 673 L RE+ + Sbjct: 601 NLYAQREMAEGHA 613 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 154/481 (32%), Gaps = 59/481 (12%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFR----VRGEVIDIFPAESDDIALRVELFDEEVER 223 + + + L L YA+ + A F + + D+FP + + LR +E Sbjct: 591 SLKELAQELINL-YAQREMAEGHA-FGKDTVWQKQFEDLFPYQETEDQLR------CIEE 642 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + D + + P + + ++ A + Sbjct: 643 IKR-DMESPR-----------PMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTT 690 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q E M + + +E SRF + + A + V+ +H Sbjct: 691 VLAQQHYNTFKERMKD--FPITVEVLSRF----RTQAEQKRILKDVKAGMVDVLIGTHRL 744 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + +G + + + ++ATP L Sbjct: 745 LQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNID--------VLTLTATPIPRTLHM 796 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDL 462 S + D + V D+++ + I + + +V R Sbjct: 797 SLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQK 856 Query: 463 TEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +++ R H ++ E I+ GE+D+LV ++ GLDMP V+ + + Sbjct: 857 AAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIV 916 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 DADK G + L Q GR R+ + Y IT K + E +R + K Sbjct: 917 EDADKMGLAQ----LYQLRGRVGRSNR---LAYAY-ITYKKDKVLSEIAEKRLQAIKEFT 968 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 E G G + D+ G + D+V DM K L + ++EL Sbjct: 969 EFG---SGFKIAMRDLQLRGAGNLLGPQQ-------HGHIDSVGYDMYCKLLAEAVNELR 1018 Query: 641 G 641 G Sbjct: 1019 G 1019 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 110/627 (17%), Positives = 227/627 (36%), Gaps = 59/627 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ + +E + L G+ + K+ + +++ ++ N+ A Sbjct: 6 LLAPIRNSTDYIQVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEA 65 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q+Y ++K + + A+ ++PS + + + + ++ R+ A + + Sbjct: 66 RQIYEDLKFYAGDRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETI 111 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LE D +VV ++ L P Y K + VG +D ++ L Y R D + Sbjct: 112 LEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEE 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F +RG++IDIFP+ S ++ +RVELF +E++ + F P T + + I +Y Sbjct: 172 RGQFSIRGDIIDIFPS-SAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKET 230 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ ++ K L + K + L + E + LG G+E Sbjct: 231 TIESFDVEAVILKLNQDYKNISKKLNQAAK----ENLKNSLEELSEKLRSLGNFRGVEKL 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 ++ E L Y + L ++DE + G + + LVE G P Sbjct: 287 LPYIY-----EKTTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFP 341 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + L + I + + ++++ RP + Sbjct: 342 GQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFPPKEIINFDTRP---------MASFH 392 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ L EI++ ++ + TK L E+L E YL + Sbjct: 393 GKLELLGKEIQRLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK--------- 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +DL GE +L LR G + + I D + G + +R + + + Sbjct: 444 QDLVTGEVVIL--SGNLRRGFEYVKNKFAVITDYEIYGVHKQQR-------KTNKTKDAS 494 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + D G + ++ + +G+ K + I G+ Sbjct: 495 PIKSFIDLKVGDYVVHEGHGIGKYIGIEE------LKVEGVKKDYLKIRYSGEGFLYVPT 548 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + D+ P ++ + Sbjct: 549 DQMDLIQKYIGSDDAPPKLNKLGGSEW 575 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 74/447 (16%), Positives = 147/447 (32%), Gaps = 45/447 (10%) Query: 225 SLFDPLT--GQIVSTIPRFTIYP----KTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 F P + + + + P V +AM+ + K + Sbjct: 606 HAFSPDSDWQKQFEELFPYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIR 665 Query: 279 KLLEEQRLTQRTQFDLEM--MNELGYCSGIENYSRF------LSGRGPGEPPPTLFDYLP 330 + +++ F + + + Y + + +S F LS + + + Sbjct: 666 AAFKAVGDSKQVAFLVPTTILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIR 725 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + +V +H + + + +G + AL + + Sbjct: 726 TGNVDIVIGTHRLLSKDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSID--------VL 777 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-DLLSEIRQRAAINERV 449 ++ATP L S + D V + V + ++ I + A +V Sbjct: 778 TLTATPIPRTLHMSMIGIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQV 837 Query: 450 LVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + + L+E RV H + E +I+ + GE+D+LV ++ Sbjct: 838 YYVYNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIE 897 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 G+D+ V+ + I DADK G + L Q GR R+ Y + K + E Sbjct: 898 TGMDISNVNTIIIQDADKLGLSQ----LYQLRGRVGRSYRQG---YAYLM-YEKDKILSE 949 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMD 626 +R K K E G G + D+ G N+ + G + D Sbjct: 950 VAEKRLKAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGGEQHG--------HMAAIGYD 998 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFE 653 + K L++ + E+ G + ++ E Sbjct: 999 LYVKLLEETVGEMRGEYTEKFEDTTIE 1025 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 122/646 (18%), Positives = 225/646 (34%), Gaps = 61/646 (9%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 +++ L EGL+ +Q + G+ S +T +A + RP +++ P++T A ++Y +M Sbjct: 12 LPSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDM 71 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA-SVNEHIEQMRLSATKAMLERRDV 136 F + V F P + + S + R++A K + ++ Sbjct: 72 LSVFKDEDVYLF-------------PGKELLYYSNLFSESGDAAAQRIAAMKRLARGDNI 118 Query: 137 VVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVVA+VSA+ P + + L I +L +L + Y R + +G V Sbjct: 119 VVVATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSV 178 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+PA + R+E F E V+ + FDP + + + + P V Sbjct: 179 RGGIVDIYPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAE 237 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 A+ + +E A + L + + E +L +R +E + E Y G+E Y + Sbjct: 238 RKNALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFYD 297 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + + DY P + LL +DE + R + TL G + D Sbjct: 298 QAA-----KITDYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFAQGDLPARSADMV 352 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 L Q + S + R L V Q D Sbjct: 353 WSYKSLLANLLTQLVAFSLF--------AHSSDHHPYRRSVSLSAKP--VPKFLGQWDLF 402 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 E+ Q RV++ T +++ + + E L E Y S+ D +R + Sbjct: 403 GEEVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLAQRSVTLL----- 457 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG-RAARNVNGKAILYG 554 L G +PE+ LV + + D + +R + G R Sbjct: 458 -------HGSLESGFVLPEIKLVLLTEQDILPQKKKKRRIKGKEGVRVG----------- 499 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + +Y + G + + I G + + Sbjct: 500 ---DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGNDKLYIPIEQIDVV 556 Query: 615 RPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQ 657 R + + MS + ++ + + A+ L AA+ Sbjct: 557 RKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLALYAAR 602 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 77/416 (18%), Positives = 125/416 (30%), Gaps = 40/416 (9%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A + Q +E + G LS Sbjct: 665 ALRGAFKAVMDDKQAAFLVPTTVLAQQHYHNFVERLEGFPVNVG------ILSRFQSPAE 718 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L + +V +H + + + +G R + Sbjct: 719 QKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKERIKML------ 772 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IR 440 + ++ATP L S V D V T D V D L+ E + Sbjct: 773 --KKNLDVLTMTATPIPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVM 830 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFD 498 + +V + L+E VR H + +++ GE+D Sbjct: 831 RELNRGGQVYFVHNRVQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYD 890 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VL+ ++ GLD+P V+ + I DADK G + L Q GR R+ I Y T Sbjct: 891 VLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQ----LYQLRGRVGRSNR---IAYAYL-T 942 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPI 617 K + E +R + K E G G + D+ G NI + G Sbjct: 943 YQKDKVLTEVAEKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNILGPEQHGF------ 993 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFI 670 V D+ K L+ I +G Q E +A + R+ + Sbjct: 994 --MMAVGFDLYVKLLEDAIRTYKGQEEDTRQEPRIEIQADAYLPASYISDARQKIV 1047 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 121/643 (18%), Positives = 234/643 (36%), Gaps = 56/643 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 E ++ +G+ G + + G+ G+ F N++ + + +++ + Sbjct: 2 KLSDLLLSSEKTEKIMKGINQGQ-NLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + Y ++ PE V + P S+ + + R+ ++ Sbjct: 61 LNRYYEDLIRMMPEEKVLLY-------------PESEVLPHEQIVPDLAETAQRIRVLQS 107 Query: 130 -MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +++ V++ + +A+ P + K + L VG ID +L Y R + Sbjct: 108 VITDKKPAVLLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDIFP S + R+ELF +E++ + F+P T + ++ + I P Sbjct: 168 ENPGEFSIRGGIIDIFPL-SVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAR 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +I +A+ IK + L ENN E L ++ LE + E G E Sbjct: 227 EIIVSPRQIKKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSE 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + TL DYLP D ++ D++ T +I G + + TL+E G Sbjct: 287 QFLPYYY-----PELHTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP+ N + + L S+T N EL + V P Sbjct: 342 LPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWVKDF--------EKVSFTTRSVEP 393 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++D +R+ RV VT + A + YL+E+ V + + R Sbjct: 394 YHGKLDLFAERVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF---RREEFSRER 450 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++V L EG + +++L + + G + +R + I N Sbjct: 451 -----------IIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRRQLNDI------EN 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G I D + KY + QG +K + + G++ Sbjct: 494 GVKISSID-----ELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVP 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + DN P + K +++ + + + + Sbjct: 549 TDQFNLVQKYIGADNKPPKLY-KLGGNDWKKVKQKVKESVKEM 590 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 68/425 (16%), Positives = 134/425 (31%), Gaps = 40/425 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A + Q E M Y Sbjct: 646 TPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKN--YP 703 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + E + L A + ++ +H + + + Sbjct: 704 INIEMISRFKTPAEQRE----VLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEEQR 759 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + ++ATP L + V D V T + Sbjct: 760 FGVSHKEKIKDL--------KRNVDVLTMTATPIPRTLHMALVGVRDMSVIETPPENRYP 811 Query: 424 EVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 + + + +R+ +V ++ +++ RV H + Sbjct: 812 IRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATMIKKLVPECRVAVAHGQM 871 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + ++ D ++DVLV ++ GLD+P V+ + + AD+ G + L Q G Sbjct: 872 NEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRADQMGLAQ----LYQLRG 927 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ I Y + + + E +R + K G G + D+ G Sbjct: 928 RVGRSNR---IAYAYLL-YEKDRVLPEVAEKRLRAIKEFTNLG---SGFKIAMRDLEIRG 980 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAA 656 N+ + G +V + K L+ + EL+G +E + A Sbjct: 981 AGNLLGPEQHG--------HIASVGFSLYCKLLEGAVEELKGKEKDKGITRVEIELDIDA 1032 Query: 657 QIRDQ 661 + D+ Sbjct: 1033 YLPDE 1037 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 119/662 (17%), Positives = 242/662 (36%), Gaps = 71/662 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + V + +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QLY +++ + + P+ D I + R+ + Sbjct: 63 RAEQLYSDLRFYSRD---------------VYMYPAKDILFFSADVHGNAITRKRMDVLR 107 Query: 129 AMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ +VA+V A++ Y+ K ++++ +D + ++L+ L Y + D Sbjct: 108 RLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 168 EEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAG 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V ++RI + + +I+ EL + L E+ R+ + E + E G++ Sbjct: 227 EIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVD 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +Y + +L D LP D +++DE+ + G R+ +E G+ Sbjct: 287 SYVDYFY-----SDTVSLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP ++ + + + + S + EV Sbjct: 342 LPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGRDDRISYAHKTEI---------ECHEVHS 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL-HSDIDTVERM 486 D L+++IR VL + + A+ + + L + YL +D R Sbjct: 393 YRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKVLTPRE 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 LR G +P + LV + + D ++R+ Sbjct: 453 IAAMA------------GRLRSGFMIPAMHLVVVSEGDVF---------------SSRSS 485 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ---NI 603 +GK + + K+ + H G+ K + I G + Sbjct: 486 SGKRTQKKLPYSGEIIKSFSDVSVGDYV------VHEKYGIGVYKGIEKIEVDGALKDYL 539 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A+G E D + S + KI+ L G Q +N ++ + L Sbjct: 540 VIEYAEGGKLYVLASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLV 599 Query: 664 QL 665 +L Sbjct: 600 KL 601 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/443 (15%), Positives = 128/443 (28%), Gaps = 44/443 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + + I V + I+ A + Q + Sbjct: 642 VKADMESSRI--MDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHYETF 699 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E M + R L + L + +V +H + + Sbjct: 700 TERMKDYPVV------IRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNL 753 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G + + ++ATP L S + D + Sbjct: 754 GLLIIDEEQRFGVNHKEKIKE--------MKTNVDVLTLTATPIPRTLHMSLVGIRDMSL 805 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 +D V +L E I + A +V E T +++ Sbjct: 806 LEEAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKLVPN 865 Query: 473 V--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + H +D +I+ E DVLV ++ GLD+P + + I DA+ G + Sbjct: 866 ANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQ 925 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R+ A + + K I E +R + K + G G+ Sbjct: 926 ----LYQLRGRVGRSDR-SAFAF---MFYRRNKVISEVAEKRLRAIKEYTDLG---SGVK 974 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 D+ G +++ + V D+ K L + E G + H Sbjct: 975 ISKADLNIRGAGSVLGESQSGNY-------EVVGYDLYCKMLNDAVRERRGDTVFHDYET 1027 Query: 651 E-------FEEAAQIRDQLHQLR 666 E F +++ +L Sbjct: 1028 EIDIPIDSFIPETYVKNDFIKLE 1050 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 122/648 (18%), Positives = 232/648 (35%), Gaps = 60/648 (9%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 N++ E + GL G L G+ K +A ++ + P +V+ P Sbjct: 3 NNSILQIIRDSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGS 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A +L +++ F+P ++ Y+P S+ + + + + RL Sbjct: 62 EEAQRLAADIESFWPGEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVL 108 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ R ++V V + P L+ L L VG IID+ A+L++L L Y R + Sbjct: 109 TNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEV 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G VRG +IDIFP +++ +R+ELF +E++ L FDP++ + V+ + + P Sbjct: 169 VEAPGQLAVRGGIIDIFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPA 227 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 V P + +E +K E + L + + + L R Q + M+ + G Sbjct: 228 QE-VLPPPDLGPGLETLKAEFSQTYATLRQ-RQPQAARELKDRVQELIAMLEAGSWPGGS 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 F R TLF+Y LLV+D+ + ++ + ++ G Sbjct: 286 SQLQPFFYPR-----QATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGL 340 Query: 367 RLPSALDNRPLKFEEFEA-LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LPS + Q +Y S P G + V + Sbjct: 341 ALPSQGQAYLDSADLERLWQRYQRLYFSLLP----RRVPGSNPRPAVGISAQT------I 390 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++ ++ E+ + R+++ L + L E G + E Sbjct: 391 PAFQGKLGLVVEELTRWRREGYRIILMVADPNRVVALRQALAEQGIEA------LTHPEA 444 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + G +V++ LR+G PE+ L I D + G +R + R Sbjct: 445 RDTL-----GRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRRP-----RRVKTPRE 494 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + D + R Q+ + G+ K + I G++ Sbjct: 495 GS-KISSFTDLKEGDYVVHVHHGIGRYLGLQQLD------VGGVKKDYLLIQYAGKDRLY 547 Query: 606 TKAKGRGKSRPIVEPDN---VPMDMSPKALQQKIHELEGLMMQHAQNL 650 + V + + + ++ + + AQ L Sbjct: 548 VPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQEL 595 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 119/405 (29%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + Sbjct: 648 PMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFP--- 704 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + L + +V +H + + + Sbjct: 705 ---VKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRF 761 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G L + + ++ATP L S V D + T D + Sbjct: 762 GVAHKEKLKQLRYSVD--------VLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPV 813 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V + + IR+ +V + + + ++++ R H + Sbjct: 814 QTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMG 873 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D G +DVLV ++ GLD+ + + + ++D G + L Q GR Sbjct: 874 EEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNFGLAQ----LYQLRGR 929 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y T K +GE +R + G G + D+ G Sbjct: 930 VGRTNR---LAYAYF-TYRPDKVLGEIAEKRLAAIREFTAFG---SGYKIALRDLQIRGA 982 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N + G V D+ + L++ + +L+ + Sbjct: 983 GNFLGPEQHG--------HMVAVGFDLYCQLLEEAVRKLKEQRGE 1019 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 121/667 (18%), Positives = 234/667 (35%), Gaps = 78/667 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 AF + + E ++ G + K+ I ++ +++ + Sbjct: 2 KAFTEPLLSLAGFEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQ 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY E F E Y PS D + + R+ A K Sbjct: 61 KAKELYDEYSFFDKE---------------VVYYPSKDVLFYQSDIRGNLLTAERIRALK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A+ E+ V +V + A+ P + + +L L G ++D + I L + Y + Q Sbjct: 106 AIREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG ++D+FP +++ +R+EL+ +E++ + FD + + + I R +IYP Sbjct: 166 QTMGQFSVRGGILDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAA 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V E ++++K E L + K E R+T E EL +G++ Sbjct: 225 ELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + + G + DY P+D L+ DE Q + + G+ Sbjct: 285 AFLSYFFDERVG-----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIE 424 LP ++ + E L + A N L + G + Sbjct: 340 ILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANGLHQLGSYGI-----------HCQS 388 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L+ ++++ RV++ + ++ A+ L+E + + G Y Sbjct: 389 VSPYNNSFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYT-------- 440 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +L G ++V +R G + P + I ++D G + ++ R Sbjct: 441 -ENYDHELFEG--QIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRH-------R 490 Query: 545 NVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G+ I + D GI ++KKV D + + Sbjct: 491 TYEGEKIQSFTDLSVGDYVVHENHGLGIY---------RGIEKLEVDKKVKDYIKI---- 537 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 G + D + A + K+++L G +N ++R + Sbjct: 538 --EYQGGSNLYILATQLDMIQKYAGKDARKPKLNKLGGQEWTRTKN-------RVRGAVK 588 Query: 664 QLRELFI 670 Q+ + Sbjct: 589 QIAGDLV 595 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 112/334 (33%), Gaps = 31/334 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 + + L + ++ +H + + + +G Sbjct: 708 LMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGLLVIDEEQRFGVTHKEK 767 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + + ++ATP L S + D V +D + V Sbjct: 768 I--------KQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEY 819 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEI 488 D+L+ E I + A N +V R D+T L+E + H + E I Sbjct: 820 NDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPDATVAFAHGQMKETELERI 879 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + GE DVLV ++ GLD+ V+ + I DAD G + L Q GR R+ Sbjct: 880 MYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ----LYQLRGRVGRSNR- 934 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 Y + K + E +R K + G G + D+ G N+ + Sbjct: 935 --TAYAFLM-YRRNKMLKEVAEKRLAAIKEYSDLG---SGFKIAMRDLEIRGAGNLLGAE 988 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G + V D+ K L + + E +G Sbjct: 989 QSG--------HMEAVGYDLYCKMLSEAVKEAKG 1014 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 304 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 115/647 (17%), Positives = 221/647 (34%), Gaps = 62/647 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + I R+ L TL G+ GS + +A ++ +RP +V+AP+ AA++ E Sbjct: 5 DSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTE 64 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ F P+ D + S + + RL+ + +++R+ Sbjct: 65 LRFFSG------------RPFDVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTA 112 Query: 137 VVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VV + A+ P L L+ G ++ L +L L Y RGTF V Sbjct: 113 AVVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DIFP + +R+E F + VE + FDPL+ + ++ + + P V E Sbjct: 173 RGGIVDIFPPGFEQ-PVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEV 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + A IK + E + + LE + + Y +G+E Sbjct: 232 LKSASHHIKA-------------RCDELEISPVARRELLEQLQQGLYPTGVEWLLPLFHP 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 R TLFDY D + VV + + R ++ E G S + Sbjct: 279 RL-----ETLFDY-AGDAVRVVLDPEALAEEDERFDRELVTAEDQARERGDLFASPAEFF 332 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-DD 434 E ++ + T + + + D ++V + ++ Sbjct: 333 LTASETAGSIEAGRLV---TIPYLTVTGESDEKTALALDIQENTDLKVDVSSDSERILKP 389 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID-TVERMEIIRDLR 493 L++ + +RV+V + A+ L E L + + SD ER Sbjct: 390 LVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNI--SDRPFPAERERD----- 442 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+ DV++G L G +PE L+ I + + G + G + Sbjct: 443 DGKVDVVIGD--LSRGFRLPEEKLIVIAEEEIFGRRQK------RRGVSELRKKQIMTSL 494 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + ++ G + + G + Sbjct: 495 AELKPGDYMVHLDHGIGI-YRGLQHISLSGCAGDFIL-----LEYAGGDKLYLPVDRLNL 548 Query: 614 SRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V + + + + ++ + + + A L AA+ Sbjct: 549 VQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAAR 595 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 136/434 (31%), Gaps = 42/434 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + + Y Sbjct: 641 PMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFKARL--GAYPV 698 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + E + + + + V+ +H + + + Sbjct: 699 TVEMLSRFRTPKEQKE----ILEKVKKGAIDVIIGTHRLLQSDVTFKDLGLLIVDEEQRF 754 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + ++ATP L S + D + T +D + Sbjct: 755 GVTHKEKLKKY--------KAVVDILTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 806 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA DDL+ E + + ++ + + E+L + H +D Sbjct: 807 KTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVPEAKIAVGHGQMD 866 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ GE ++L+ ++ GLD+P + + I AD G + L Q GR Sbjct: 867 EGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQ----LYQLRGR 922 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P AI R R K + E G G D+ G Sbjct: 923 VGRSKQR---AYAYLLIPGEG-AISSDARERLKIIQELTELG---AGFRLATHDLEIRGA 975 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM----QHAQNLEFEEAA 656 +I K G V D+ + L++ I L+G + NL A Sbjct: 976 GDILGAKQSGN--------IAAVGFDLYTELLEEAIQNLKGEERLERVEPEINLRIP-AF 1026 Query: 657 QIRDQLHQLRELFI 670 D + + + I Sbjct: 1027 VPEDYVREPNQRLI 1040 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 109/658 (16%), Positives = 209/658 (31%), Gaps = 58/658 (8%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 P+ + +A + + LG+ S + + IA + + +R +VLAP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ F + + P+ K S + R+SA M Sbjct: 64 LCADLDFFLQDLKQPESALPGQGW--ILEFPAYHILPFKGISYHTETAANRISALSRMAN 121 Query: 133 -RRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +VV + A+ L + G +D+ A + +L Y +N + Sbjct: 122 SPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEP 181 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F VRG ++D++ LR+E F +EV+ + F P T + + + I P T V Sbjct: 182 GDFCVRGSIVDVYGPPYSQ-PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAV 240 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 ++R+ + ++E+ + + ++ + GIE + Sbjct: 241 VSKDRLQSVIHRVREKAVLADMP-------------VTKIREVVDSLKATQQFPGIEGFV 287 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 L G +LFDYLPAD L V + + ET Sbjct: 288 PLLYENGG----DSLFDYLPADTLCTVLDPVAASQEYEKYLEDVEENFETAQAENRLSIP 343 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATP---GNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + L T G E E + V T L+ + + Sbjct: 344 PAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKASKE 403 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L + + +++ +K AE L L +G + R + Sbjct: 404 RDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVGLS----------RNQ 453 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 V++G L G P SL + + + G R + R Sbjct: 454 NWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPKHRRRKIETQRPRT----- 506 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + + + + +HGI G K+ + Sbjct: 507 ----------------ELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLEY 550 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + + + + + +L G + ++ + +I +L +L Sbjct: 551 RDGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKL 608 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 63/435 (14%), Positives = 127/435 (29%), Gaps = 42/435 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A Q + L+ Sbjct: 658 PMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYE------ 711 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G L+ + L + +V +H + + + + Sbjct: 712 GYPVKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRF 771 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L S + D V T Sbjct: 772 GVKHKETLKKI--------RATVDVLALTATPIPRTLHMSMVGIRDITVINTPPEQRRP- 822 Query: 425 VRPVATQVDDLL--SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDI 480 + ++ D+++ IR A +V + + + L+ R H + Sbjct: 823 ITTYVSKFDEVIAAEAIRAELARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQM 882 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +++ E D+LV ++ GLD+P + + I AD G + + Q G Sbjct: 883 SETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTILINRADMFGLAQ----IYQLRG 938 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R + Y P + + +RR K EH G + D+ G Sbjct: 939 RVGRGDDQ---AYAYLFIPDESVLTRDAQRR----LKVLMEHSDLGAGFAIAMSDLQIRG 991 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL----MMQHAQNLEFEEAA 656 A+ + V +M + ++ I +L+G + N++F A Sbjct: 992 GGTILGSAQSG-------QIAAVGYEMYLQLMETAIGQLKGEGSAPPLDPEINVDF-SAF 1043 Query: 657 QIRDQLHQLRELFIA 671 + + + +A Sbjct: 1044 IPEWYIPDVDQRLLA 1058 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 114/649 (17%), Positives = 216/649 (33%), Gaps = 57/649 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAH---QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 +++ + E Q + G++GS +A + RP ++ + Sbjct: 4 LVDIIPYENSLQNIIEDFSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDN 63 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A LY ++ + V + P + + A + + R Sbjct: 64 YRAESLYSDLVTLLDKEQVYIY-------------PEHQVYPFELAWQSRDVNNERAQVL 110 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMM-LHLTVG-MIIDQRAILRRLAELQYARND 185 +AML ++ V + S+ + P +K L+L VG + I +L L Y Sbjct: 111 QAMLSKKSAVYIFSLKSAKEKLSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTS 170 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q+G F RG +ID+FP S+ + +R+E FD+E+E + FD T + + + P Sbjct: 171 MVEQKGQFSHRGGIIDVFPVASE-LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGP 229 Query: 246 KTHYVTPRE-RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + V + QA+ ++ E ++ L+++ + L +R DL + Sbjct: 230 GSQLVIGDNTNLSQALNQLTREFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLP 289 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Y + + G T+ D+LP + L VDE + E+L+E Sbjct: 290 HFHRYLSYFYPKNYG----TIIDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEE 345 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G LP + + TIY + E + Sbjct: 346 GKILPGESNLFYSIEDVLSGNPFDTIYSANFLRQNPFE----------NVSQATNMSVKS 395 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + Q D L E++Q N R+++ + T A L E L++ + E Sbjct: 396 MNQFYGQWDFFLKEMKQWMNNNYRIILFSPTPESARTLYENLKKEEIGATIVEKGNTKTE 455 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 V++ + L+ G + E L I D G Q +R Sbjct: 456 ------------NQVVIAVGDLKSGFILQESKLAVITYGDLWG--------HQKKKIRSR 495 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + KY + GL K + I G + Sbjct: 496 KRDKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSL 555 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNL 650 + + + V + P + Q+ ++ + + A++L Sbjct: 556 YVPTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDL 604 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 106/303 (34%), Gaps = 29/303 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + ++ATP L S V D V T V Sbjct: 767 EQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYV 826 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 L+ E + + + +V V + + + + + +V H + + Sbjct: 827 MEHSPQLIREAVNREISREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQL 886 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D G++DVLV +++ GLD+ V+ + I +AD+ G + Q GR R+ Sbjct: 887 ERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTIIIYNADRMGLSQP----YQLRGRVGRS 942 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIA 604 + Y T K + + +R K K E G G + D+ G NI Sbjct: 943 NR---MAYAYL-TYQKDKVLTQEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNIL 995 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + G V DM K L+ I E+ EE +I+D + Sbjct: 996 GPEQHG--------HIMAVGFDMYTKMLKDAIKEISQESQTQ------EETTKIQDDKTE 1041 Query: 665 LRE 667 + + Sbjct: 1042 VEK 1044 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 90/519 (17%), Positives = 197/519 (37%), Gaps = 45/519 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + IR + L++ Q + G+TGS + + V +RP + + N Sbjct: 2 KGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + + + P+ + + + + + R+ A Sbjct: 62 HAQKLYDDLLSLMDVDRLFLY-------------PADELISSELSISSPELRGQRVEALD 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L + +V+ V+ + + P L+ + + G ID + ++L + Y + Sbjct: 109 FLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG +IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T Sbjct: 169 NTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + ++ +++++ L E + ++Q L + + DLEM+ Sbjct: 228 EIILDQSYYPDIVKRLEKKMMLT---LNELKEQEDKQALIENLEEDLEMLRSGVKPD--- 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 F P +LFDYLP + +++DE + + R + + + Sbjct: 282 --MFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMET 339 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + E IY+S + + + V +++ Sbjct: 340 VRDV-QVSHSFKKLLEGNHSPKIYLSLF----QKQMASMRVSKTTNI------VYKQMQQ 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q++ L +E+ N V++ AE + + L ++ L + D Sbjct: 389 FHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---- 444 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G ++G + G ++P + I + + Sbjct: 445 -----KYGMVQFVIGT--FQNGFELPLAKVAIISETELF 476 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 120/652 (18%), Positives = 233/652 (35%), Gaps = 66/652 (10%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 +Q ++L + + G Q + G++GS +T +A ++ Q+P + + + + +L Sbjct: 14 IEQSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELA 72 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ P + V F P + + A+ + + R+ A A+ +R Sbjct: 73 DDLANLLPPDRVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALDALDSQR 119 Query: 135 DVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 VVV SV+ + P+ + + L + VG +D ++L+ + Y + G F Sbjct: 120 PAVVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDF 179 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +ID++ +D+ +R++LFD EV+ L FD T + V I P T + P Sbjct: 180 AIRGSIIDVYALNTDN-PVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPP 238 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +K++ + K L++ Q++ R L + E + + + + Sbjct: 239 AEFSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLV 297 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 +L DYL ADG L +D+ + G + D+ E V+Y + Sbjct: 298 YPTR-----HSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKYHQLVSVPSL 352 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + Q G L S +V+ RP Q+ Sbjct: 353 SNEFAKLVKADQHAQLFGALFKKGAGNLRFSQ--LVEITSRPMQR---------FFGQMP 401 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L +E+++ + +++ + + L + G V +D V ++ Sbjct: 402 LLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPVIETAADQLQVNTVQ------ 455 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 LV L G +MP LV I + + ++ R Q + A R Y Sbjct: 456 ------LVA-ASLNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAER-----IKSY 503 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 D + HGI K + + Sbjct: 504 TDLKPGDYVVHVN---------------HGIGIFSGIKTMEVDGVHQDYMIINYRNNAQI 548 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V +S ++ +I+ L G + + I D+L L Sbjct: 549 FVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDL 600 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 115/346 (33%), Gaps = 34/346 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L A + +V +H + + + +G + L Sbjct: 728 LAAGSIDIVVGTHRILSKDVQFRDLGLVIVDEEQRFGVKHKERLKEL--------KNNVD 779 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S V D V T V Q + + I + Sbjct: 780 VLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGG 839 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E+ L+ R Y+H + E ++ D G +DVLV ++ Sbjct: 840 QVYYLHNRVSDIEETVMKLQALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSI 899 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + + +AD G + L Q GR R+ + Y + K + Sbjct: 900 IETGVDIPNVNTLFVENADHLGLAQ----LYQIRGRIGRSNR---VAYAYFM-YQPNKVL 951 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G G + D+ G NI + G D+V Sbjct: 952 TELGEKRLAAIRDFTELG---SGFKIAMRDLAIRGAGNILGKQQHGF--------IDSVG 1000 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRE 667 D+ L + + +G + E E EA ++ R+ Sbjct: 1001 YDLYSSMLNEAVARKQGKKRAARADAEVELGVEAYLPDSYVNDQRQ 1046 Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 63/208 (30%), Gaps = 18/208 (8%) Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARK-ETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 G ++ + + G+ P+ + F + Sbjct: 575 GGNEWAKTKRRVASKVEDIADELVDLYAKREAAKGYAFPADDYLQAQFDANFPYTETRDQ 634 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 S ++EK +D ++ + + + I + ++V Sbjct: 635 LRSIKEVKRDMEKPR------------PMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVA 682 Query: 451 VTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-L 505 T ++ + L++ ++ + E E L G D++VG + + Sbjct: 683 FLVPTTVLAQQHFDTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGTHRI 742 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSER 533 L + + ++ LV + + + G ER Sbjct: 743 LSKDVQFRDLGLVIVDEEQRFGVKHKER 770 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 117/649 (18%), Positives = 214/649 (32%), Gaps = 66/649 (10%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L + LE G GV F ++ + L P +V+ + A + Sbjct: 5 QEKKILPVLVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTE 64 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-R 134 + + F P +A A PS + + + R+ M E Sbjct: 65 DARFFQPADA----------RAEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLA 114 Query: 135 DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+V +V A+ P + ++ G +D A+ +L Y R + G F Sbjct: 115 PAVLVLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG ++D+F + R++LF + VE + F P+T + T+ P V + Sbjct: 175 SIRGGIVDLFSPFHE-APARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAK 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +RI + + +K+ + E ++ ++ M + G+E+ + Sbjct: 234 DRIGRLIAAVKK-------------RSAELNLPVSVSRDIIDRMEQGTDTEGMESLMPLV 280 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P TLFDYLP LLV+ + + + R ET E G R D Sbjct: 281 Y-----ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEG-RWCVPPD 334 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L ++ + A + +S P VV G+ D + TQ Sbjct: 335 ALYLDWQAVQKEAFKKPLLSF-PVLPVSATPEDGDNTPVVETAGVTDNSAVTLMLRTQPR 393 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D LLS I + + ++ + + + +L H E + Sbjct: 394 DTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVP----------HESL 443 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + L G L I D + G +R R++ Sbjct: 444 DAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRH---------RSSAGK 494 Query: 547 NGKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G +Y D T + + R + + GI L D + Sbjct: 495 KGARDVYLDLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRD-----GDRL 549 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 +R V D+ + K + ++ + A+ + E Sbjct: 550 YLSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKE 598 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 103/302 (34%), Gaps = 28/302 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + ++ATP L S + D V T + Sbjct: 762 EQRFGVKHKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMRDISVITTPPEHRKAIKTYI 821 Query: 429 ATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVER 485 + D ++ IR+ ++ + ++L++ VR +H +D Sbjct: 822 SEFDDAIIRTAIRKELERGGQIYFVHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTL 881 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + E D+LV ++ G+D+P + + I AD G + + Q GR R+ Sbjct: 882 ETCMMQFVNREIDMLVCTRIIESGIDIPSANTIFINRADMFGLAQ----IYQLRGRVGRS 937 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y P + A+G+ R+R K EH G + D+ G A Sbjct: 938 DEQ---AYAYLFIPRES-ALGKDARKRL---KVLMEHSDLGSGFQIAMNDLKIRGGGAAL 990 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQI 658 ++ V DM + ++Q + EL+G + N E F A I Sbjct: 991 GVSQSG-------HITAVGYDMFLQLMEQAVAELKGEPVTETLNPEINIPVSSFLSEAYI 1043 Query: 659 RD 660 D Sbjct: 1044 SD 1045 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 235/661 (35%), Gaps = 71/661 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 +N F + + + +++ + G+ K ++ DL R + + + Sbjct: 1 MNDVFLYPLQNSKEYKDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSS 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++Y ++ + + Y+ D + + + + E +L Sbjct: 61 DLEAKKVYEDLSFYMED--------------KVEYLGFQDIYFYHLDAKDRNEEAKKLKV 106 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + +++V S+ A+ + L + H VG +D + +L L Y R Sbjct: 107 LLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVS 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F +RG +ID+F E +R+ELFD+E++ + FD + + + + +F+I P Sbjct: 167 KIEGFGQFSIRGGIIDVFSLEY-TNPIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ P E+ A+ ++K+E + + T +++ ++ Y G Sbjct: 226 SREFIYP-EKTTDALVKLKKET---------------TKNTDEGTFQNIDYISSKTYFEG 269 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENY ++ E ++F YL D ++ +++ + R + +E G Sbjct: 270 AENYIDYIYP----EENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERG 325 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + +++ +++ S +++ R EV Sbjct: 326 LAIKNQGKLLYHYTDLEYLVKDKSVVLNSLLPKSINNFSIKSIINFESR---------EV 376 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD L+ E+ + ++++ T T A L + L + G + +R Sbjct: 377 PTFNGKVDLLVEELNRLKYNGYKIILATNTLERANKLGKDLLDKGLETTI------SKDR 430 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ V++ + G + V I D + G + RA++ Sbjct: 431 DIEIKS-----SQVIIVPAHINSGFQYKSIKFVVITDNEMIGVYK----------RASKT 475 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 N K + +Y IT + K + I+ G + Sbjct: 476 SNKKVKKGKKIESFLDLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGDNLY 535 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 K + + + + ++ + +++ + ++L E R+++ Sbjct: 536 VPIDQMDKVQKYIGAEVEKVKLNKLGTNEWTKAKAKVKKEIEDMTKDL--IELYAKREKI 593 Query: 663 H 663 Sbjct: 594 Q 594 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 123/674 (18%), Positives = 254/674 (37%), Gaps = 84/674 (12%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQT--LLGVTGSGKTFTIANVIADLQRP 59 + L + I + + + + ++T + G+ + K I + L Sbjct: 3 NTKTTLTKPL-------KKIEGMNKFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTC 55 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 V+A ++ A + ++ F V Y PS D + I Sbjct: 56 PFVIASSEEEAEVVKEDLAFLFGSENV-------------IYYPSRDILFYNADVHSNEI 102 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAE 178 + R+ A A+++ + ++V ++ A+ P D +++ + + +G +D +++ +L E Sbjct: 103 VKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQIVIKIGDTVDLQSMSYQLIE 162 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R + G F +RG ++DIF + + +R+EL+D E++ + F P+T + + I Sbjct: 163 NGYERVGRVEVVGQFAIRGGIMDIFSPAN-NTPIRMELWDTEIDSIRRFSPITQRTIDNI 221 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 R IYP + PRE++++A+ I++EL A VL E+ R+ + T D+E + Sbjct: 222 ERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGAKSAANRIKENTNEDIESI- 280 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 +G+ ++ L +LFDYL + + + ++ ++ Sbjct: 281 ----VNGLNIETQVLYAPFCDMETASLFDYLEYKKTIFITDIKKCKDKLLRVFLEYEESV 336 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 ++ +EYG LPS + EE A + Y+ P + + + ++ Sbjct: 337 KSRLEYGHMLPS-MVKFIFNREEIIAKVFEKNYIGFMPFLASDDMATTKNILEIRLN--- 392 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 E+ + +++Q A + + TK A + E LEE Sbjct: 393 -----EINSNYKGLKIFEQDLKQYKAEGKATVFLAGTKSKAAHVAEILEEQKIYTAL--G 445 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ D++ G +L+ L G ++ V + D + G R + + Sbjct: 446 DLT--------YDIQKG--QILIASGSLSHGFIYEDLEFVILSDRELFGKDRKVSTKKKY 495 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G I E +E HGI G+ + I+ Sbjct: 496 KG----------------------AKIESFMELAEGDYVVHENHGI---GIFIGIEKIVT 530 Query: 599 LG--QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 G ++ K +G I + D V + + K++ L + A++ Sbjct: 531 EGVARDNLKINYEGGTLYVNINQMDLVQKYVGSEGAAPKLNMLGNPEWKKAKS------- 583 Query: 657 QIRDQLHQLRELFI 670 + R+ + + + I Sbjct: 584 KARNSVKNIAKELI 597 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 136/458 (29%), Gaps = 52/458 (11%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++++ + + + + I + + I+ A Sbjct: 632 DQIDAI-------QAVKTDMESDKI--MDRLILGDVGYGKTEVAIRAAFKAILNHKQVAY 682 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q + L+ M G+ LS + + + + +V Sbjct: 683 LVPTTVLAQQHFERFLKRMESQAISVGV------LSRFRTPKQIKETLKGIESGMIDIVI 736 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G L + + ++ATP Sbjct: 737 GTHRLLSKDVLFKDLGLLIIDEEQRFGVAHKEKL--------KQMRTEVDALTLTATPIP 788 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L+ S + D V + V + DD + + I + +V + + Sbjct: 789 RTLQMSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVYFLSXRVQ 848 Query: 458 MAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + L +V H + E I+ E +VLV ++ GLD+ Sbjct: 849 NIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANA 908 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I+DADK G + L Q GR R+ Y + + E +R Sbjct: 909 NTIIIVDADKMGLSQ----LYQLRGRVGRSDKQ---AYAYLL-YKRDXILSEVAEKRLNA 960 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 K + G G + D+ G ++ + ++ K L++ Sbjct: 961 IKQFTQLG---AGFKIAMRDLEIRGAGDLLGASQSG-------HMAKIGYELYSKMLREA 1010 Query: 636 I--------HELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 I E + + F + I+D++ +L Sbjct: 1011 ILIEQGGGIEEEKIETTIEIKINAFISSNYIKDEIQKL 1048 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 292 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 45/520 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + A++ GL Q +LGV G + A + D P +++ P + Sbjct: 3 GLTEFLRETPALKTAVSGLAR-YKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGERE 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 AA L ++ P + F + + + + + I R+ +A Sbjct: 61 AAALADDLVTLLPGRGIFVFS-------------AWELLPVQVLAYSREIGVRRMRVLEA 107 Query: 130 MLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ + VV+A V A+ L P + + + L G A+ RL + Y Q Sbjct: 108 LITGTNPVVIAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVD 167 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG + D+FP + +RVE F +E+ L FDP T + + R T+ P T Sbjct: 168 TAGQFSIRGGIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATE 226 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V + +E + E + L + +RL + + L ++ + GIE+ Sbjct: 227 LVVEDDAWEAGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIED 286 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + TL DYL G++ V E + L+E G L Sbjct: 287 LLAYFYPQAA-----TLMDYLGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLL 341 Query: 369 PSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 P + + F ALAP +T+Y+S +S ++ +V G L V Sbjct: 342 PGQFRLYLDREQLFAALAPFRTVYLSLFGRVGAFSRSDREIRFEVRELPGNLGRTGAV-- 399 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L EIR+R +RV++ T A L L + G E + Sbjct: 400 --------LGEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAA------FQAYELGQ 445 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + V VG+ L +G ++ E L + + + G Sbjct: 446 VQPG------QVAVGVGRLNKGFEIAESQLAVLTEREIYG 479 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 140/434 (32%), Gaps = 48/434 (11%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q E N GY Sbjct: 645 PMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHLQTFRERFN--GYPV 702 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF S R + L D +V+ + + G E Sbjct: 703 VIEMLSRFRSVREQKQV---LADLAAGKVDIVIGTHRLVQDDVQFADLGLIVVDEE---- 755 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + I ++ATP L S + D + T LD Sbjct: 756 -----QRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPV 810 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ E + + A +V + + +L+E R H + Sbjct: 811 QTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMR 870 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D G +DVLV ++ GLD+ V+ + + +AD+ G + L Q GR Sbjct: 871 EDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEADQLGLAQ----LYQLRGR 926 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y T + +GE +R + + + G G D+ G Sbjct: 927 VGRSNR---LAYAYF-TFRRDRLLGEAAEKRLRAIRDFTDFG---SGFRLAKRDLEIRGA 979 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE------- 653 N+ T+ G V +M + L++ + EL+G A EFE Sbjct: 980 GNLLGTEQHGN--------ISVVGFEMYCRLLEESVRELKGE----APPEEFETVVEVPV 1027 Query: 654 EAAQIRDQLHQLRE 667 A D + + Sbjct: 1028 TAFLPDDYIPDPEQ 1041 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 111/671 (16%), Positives = 236/671 (35%), Gaps = 77/671 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + S ++ + + L E G + + G++G+ K IA + ++ +V+ N Sbjct: 1 MKSIITEYINEDKRYQELNEVF--GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A +L ++ +F ++ + + P D E+ ++ + R+ Sbjct: 59 LYQADKLESDLLQFVEDSEIYKY-------------PMQDIMTEEFSTQSPQFMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + + ++ + P D++ L L VG ID L +L + Y R Sbjct: 106 LTALAQEERGLFIVPLNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG ++DI+P +R+E FD EV+ + FD + + I I Sbjct: 166 VVSHIGEFSLRGGIVDIYPLIGK--PVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNEL 300 + Y+ + + ++K+ R + ++ + E +L + FD +++ L Sbjct: 224 ASDYIITEDVLKHTKHKLKQAYEDTRPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRL 283 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 E P T+ DY D ++ VDE + + + Sbjct: 284 VAF--------------MYEQPATIMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQN 329 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G +D L++E FE L T + +++ +P Sbjct: 330 LIESGKGF---IDQSFLQYEGFENLLKPFAVTYFTLFTATMPVQLNEIIKFSCKP----- 381 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 V+ Q D + SE ++ + ++V T+ E + L E Sbjct: 382 ----VQQFYGQYDIMRSEFQRFIQNDYTIVVLAETETKKERIQSMLNEMHIPTFI----- 432 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 DT R R ++ L EG ++P + LV + + + + ++ Sbjct: 433 DTPSR-------RNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTL 485 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A K Y D + R + G++K + + G Sbjct: 486 TNA----EKIKSYQDLKVGDYVVHVHHGVGRYLG------VETLEVGGVHKDYIKLQYKG 535 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + + V ++ ++ K + + + + Q +++ E Sbjct: 536 TDQLFVPVDQMDQVQKYVASEDKSPKLN-KLGGTEWKKTKAKVQQSVEDMADELI----- 589 Query: 661 QLHQLRELFIA 671 +L++ RE+ + Sbjct: 590 ELYKAREMSVG 600 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 73/461 (15%), Positives = 149/461 (32%), Gaps = 46/461 (9%) Query: 220 EVERLSLFDPLTGQIVSTIPR-FTI-YPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E++ P + + I + I P + + ++ A + Sbjct: 614 EIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVA 673 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + Q + +E M + + +S + + L + + +V Sbjct: 674 FLVPTTILAQQHYETLIERMQDFPI------EVQLISRFRTTKEVKETKEGLKSGFVDIV 727 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + +G R + + + ++ATP Sbjct: 728 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSL--------KNNVDVLTLTATPI 779 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTK 456 L S V D V T + V Q + + E + + + + +V Sbjct: 780 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKV 839 Query: 457 RMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + E L+ H ++ + E + E+D++V ++ G+D+P Sbjct: 840 QSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPN 899 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + + I DAD+ G + L Q GR R+ I Y + P K + ET R + Sbjct: 900 ANTLIIEDADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHP-TNKVLSETAEDRLQ 951 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 K E G G + D+ G K + D+V D+ + L++ Sbjct: 952 AIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSVGFDLYSQMLEE 1001 Query: 635 KIHELE--GLMMQHAQNLEFEE-------AAQIRDQLHQLR 666 ++E Q A +E E A I ++ ++ Sbjct: 1002 AVNEKRGIKAEKQDAPEIEIELNIDAYLPAEYIPNEQSKIE 1042 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 104/656 (15%), Positives = 220/656 (33%), Gaps = 69/656 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + Q + + L G Q + G+ GS +T IA+++ + QR + + A Sbjct: 3 LEAFMTQTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +Q + ++ P + + A+ + R+ A +A+ Sbjct: 62 SQ-------------LVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRAL 108 Query: 131 LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVVV S+S + L P + ++VG D A+ ++L + YA Sbjct: 109 QSDRPVVVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAA 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG +IDI+P +D +R++ FD EV+ L FDP T + + + P T + Sbjct: 169 PGDFAVRGSIIDIYPLAAD-YPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDF 227 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ + + + LT + Q ++ + + + + Sbjct: 228 ILTADERATGATALR----TTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDPQLLEF 283 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + +L + DYLP DG+++ + + + + + Sbjct: 284 ADYL-----FPEHHQVLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFT 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L+ Q + G L + ++ Sbjct: 339 QQTFGGELRPIVRADKHAQIMLALFQKGMGSLRFQAMTNM-----------TTRAMQQFF 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ + +EI + + V++ + + + L++ + S +++ Sbjct: 388 GQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLTKSANLQPALTQLV 447 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + L+ G ++PE SLV I +A+ + +R QT+ A R Sbjct: 448 PE-------------RLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAERLK--- 491 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + + + G+ + Sbjct: 492 --SYTDLKPGDYVVHVNHGIGKFI-GMQTLTVDGVHQDYMTI--------------DYQD 534 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + +S + + KI++L G ++ + I D+L L Sbjct: 535 NAQLFIPVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDL 590 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/443 (16%), Positives = 138/443 (31%), Gaps = 40/443 (9%) Query: 233 QIVSTIPRFTI--YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + + P + + ++ A + Q Sbjct: 626 RTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHY 685 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + GY +E +SRF R + + D L L +V +H + Q Sbjct: 686 DTMVSRFE--GYPINVEMFSRF---RTTKQIHQAIKD-LETGQLDIVVGTHRLLSQDVKF 739 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + L + ++ATP L S V D Sbjct: 740 KNLGLVLVDEEQRFGVKHKERLKQL--------KANVDVLTLTATPIPRTLHMSMLGVRD 791 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + V Q + + IR+ +V E ++ Sbjct: 792 LSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVL 851 Query: 470 GERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R Y+H + + ++ D G++DVLV ++ G+D+P + + + +AD+ G Sbjct: 852 VPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMG 911 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y T K + E +R + K E G Sbjct: 912 LSQ----LYQLRGRIGRSNR---VAYAYF-TYQPNKVLTEVSEKRLEAIKDFTELG---S 960 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G K + ++V D+ + L + + G Q Sbjct: 961 GFKIAMRDLSIRGAGNLLGKQQHGF-------INSVGYDLYTQMLSDAVAKKRGQKTQPK 1013 Query: 648 QNLEFE---EAAQIRDQLHQLRE 667 + E EA D + ++ Sbjct: 1014 TDTTIELGVEAYLPSDYIEDEQQ 1036 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 287 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 210/650 (32%), Gaps = 65/650 (10%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 + + LE G H L G+ GS +A+++A R +VL P++ A + E+ F Sbjct: 14 ATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFA 73 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVAS 141 + P+ D S + I RL + VV Sbjct: 74 SPSHA------------PLSFPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMP 121 Query: 142 VSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 V+A L+ + +L G ++ +L RL ++ YA RGTF VRG ++ Sbjct: 122 VAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGIL 181 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 DIFP +R+E F + E + FDPLT + + + + P + Sbjct: 182 DIFPPNLS-APVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIILTD------- 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + ++A R K ++ ++ +R + LE + Y G+E L Sbjct: 234 -GVLADIAPRLKGCCDDLEIPANRR-----REILENLKSAVYFRGVEYLQPLLHPGL--- 284 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 T+FDY P L ++D I + + + E S L E Sbjct: 285 --ETIFDYAPDASLALLD--PQAIQEAITTFGRELEDGEATARQNGLPHSPRQELYLDGE 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + L + + E + + T L + + + L +R Sbjct: 341 QLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDL--RVTVSKETTQALTPLSRSLR 398 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q RVL+ AE L E L + + + E D L Sbjct: 399 QWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAETVQGEAQGDASPDGVVTL 458 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + + L G + E LV I + + G ++ G Sbjct: 459 LQGD-LSRGFRLLEARLVLIAEEELFG------KRVRRRG---------------ISEVR 496 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + + + +HGI + + G + G P+ Sbjct: 497 KKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLEYNGGDKLYLPVDRL 556 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 V + P+ + +L G+ + ++ + R + +L + Sbjct: 557 ALVQRYVGPEGSSPSLDKLGGVSWEKSK-------GKARKAIEELAGELL 599 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 136/432 (31%), Gaps = 44/432 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + E + E Y Sbjct: 651 PMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHFETFHERLKE--YPV 708 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + + L + +V +H + + + + Sbjct: 709 RVEALSRF----RTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLLIIDEEQRF 764 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L S + D + T +D + Sbjct: 765 GVKDKERLKAF--------RAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 816 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA ++L+ E I + +V + E + + H + Sbjct: 817 KTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPEAKIAVGHGQMG 876 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ GE ++L+ ++ GLD+P + + + AD+ G + L Q GR Sbjct: 877 EQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQ----LYQLRGR 932 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + R + Q +E G D+ G Sbjct: 933 VGRSSQRG---YAYLLIPGEGSLTSDARERLKILQDISE----LGAGFRIATHDMEIRGA 985 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLE---FE 653 ++ ++ G + ++ + L++ I + G ++ NL+ F Sbjct: 986 GDMLGSRQSGTV--------IEIGFELYNQMLEETICRMRGEEMIEQVEPEINLKVPAFI 1037 Query: 654 EAAQIRDQLHQL 665 +RD +L Sbjct: 1038 PETYVRDTGQRL 1049 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 285 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 112/657 (17%), Positives = 221/657 (33%), Gaps = 70/657 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + + + L Q +LG++GS K + L + +++ P A Sbjct: 4 LHQTISKLKGFKEWFDTLSL-HESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q Y E+ E++ E+ V F P ++ + V+ + R+ + Sbjct: 63 TQTYEELSEWYDEDIVHLF-------------PVEESLAADFSVVSPDVVSQRIRTLDFL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIID-QRAILRRLAELQYARNDQAF 188 + +V+ +S I L P + K + L +G I+ A + RL EL Y R + Sbjct: 110 SRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMGSEIESMDAFVERLVELGYRRENMVA 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++DI+P + LR++ FD EV+ + F+ T + + I I P T Sbjct: 170 TPGEFALRGSIVDIYPL-DQEYPLRLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATD 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +E + +A +I K + + + Q LE I + Sbjct: 229 LPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVSSIQQAIDAQLENGE-------IPS 281 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + +L DY+ D L++D+ I + + K +E G Sbjct: 282 NLPYFLECI-YPEKTSLLDYVSKDAYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIA 340 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + E+ +T G L D + + T + Sbjct: 341 SGLSLVQDGRKLLKESPLKRTYLAIFQKGLGRLSL---DAIHPITTRT--------MTQF 389 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + E + V+V + A+ + + + + + Sbjct: 390 FSQMPMVKVEADRWKKQGATVIVLVDDAKRAQKVEQTFADFDIKSVISNG---------- 439 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++VG + G ++PE + + + L Q I A R + Sbjct: 440 --TVLEGQLQIMVG--KMHNGFELPEDKFAILTERELFNKLTKRAPRNQKISNAERLKSY 495 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + GD + + + E GI ++ Sbjct: 496 TELAVGDYVVH------VNHGVGVYQGMETLEIGGIHQDYMSIH--------------YQ 535 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + V +S A K+++L G + + I D+L +L Sbjct: 536 DGGNLFVPVSQIKLVQKYVSSDAKVPKLNKLGGTEWAKTKRKVAAKIEDIADELIEL 592 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 73/453 (16%), Positives = 140/453 (30%), Gaps = 48/453 (10%) Query: 230 LTG---QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 T + V+ I P + + ++ A + Sbjct: 622 ETQDQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTI 681 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q + ++ ++ + G LS + L + +V +H + Sbjct: 682 LAEQHYENFVQRFSDYPFKIG------LLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLL 735 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + +G + L + ++ATP L S Sbjct: 736 SKDVQFLDLGLLIVDEEQRFGVKHKERLKQL--------KSQVDVLTLTATPIPRTLHMS 787 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLT 463 V D V T + V Q + + I + A +V E Sbjct: 788 MLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKA 847 Query: 464 EYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + L G RV +H + I+ GE+DVLV ++ G+D+P V+ + I Sbjct: 848 DELRVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIE 907 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 +AD G + L Q GR R I Y + K + E +R + + E Sbjct: 908 NADYMGLSQ----LYQLRGRVGRTNR---IAYAYLM-YQPDKVLTEVSEKRLQAMRDFTE 959 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G K + D+V D+ + L + + + +G Sbjct: 960 LG---SGFKIAMRDLSIRGAGNLLGKQQHGF-------IDSVGFDLYSQLLSEAVLKKQG 1009 Query: 642 LMMQHAQNL--------EFEEAAQIRDQLHQLR 666 ++ + + A+ I+D+ ++ Sbjct: 1010 KEVKSDEETVEIDLQIDAYIPASYIQDERQKIE 1042 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 98/604 (16%), Positives = 203/604 (33%), Gaps = 53/604 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I +++ + Q + +TGS K A +I +P +++ ++ LA + +++ + Sbjct: 33 IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P V YF PSS+ + + R+ + + VV Sbjct: 92 LPGEDVLYF-------------PSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVV 138 Query: 141 SVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ + + +L L G D + + ++L+ Y R D +G F +RG + Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI P + + LRVE FD+EV+ + +FD T + T+ I P V E + + Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E++ + + L + + +++ ++ Q E + I Y L Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLEEPL-- 314 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 F L D +++DE Q+ + + G S D Sbjct: 315 ---EPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYE 371 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + + +T + + + RP + + L+ EI Sbjct: 372 QFLRYGEKHPFVLISTLPREIPGVAPKRIFNLNARP---------LTGFMGKTGILVDEI 422 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V + + AE + + L + G ++ E+ ++ G V Sbjct: 423 EHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALA----------KKHELHEPVQEG--GV 470 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 V + L +G ++P L+ + +A+ + A G+ + + D Sbjct: 471 YVYSSSLDQGFELPLSKLIVLSEAEIY----KRERKAAVKRKKAPEKTGQRLQFADLKPG 526 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + ++ I G+ K + GQ+ + + Sbjct: 527 DFVVHVHHGIGQFMGIER------IAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 620 PDNV 623 D Sbjct: 581 SDAE 584 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/412 (16%), Positives = 121/412 (29%), Gaps = 35/412 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E Sbjct: 668 PMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQERFM------ 721 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + LS + + L + +V +H + + + Sbjct: 722 GYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLLIVDEEQRF 781 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + +SATP L S V D + T D Sbjct: 782 GVAHKEKLKTL--------KANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPV 833 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 VA D++ E IR+ +V E + +L + RY H + Sbjct: 834 QTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMS 893 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + E DVLV ++ GLDMP V+ + I +AD+ G + L Q GR Sbjct: 894 EKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQ----LYQLRGR 949 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + K + E +R + E G GL + D+ G Sbjct: 950 VGRSNRRAYSYFLY----KPQKVLTEVAEKRLAAIREFTEFG---SGLKIAMRDLEIRGA 1002 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + ++ + L++ + EL+G ++ E Sbjct: 1003 GNLIGAQQ-------HGHLAALGFELYSQMLKEAVQELKGEQVEEKIETSIE 1047 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 113/667 (16%), Positives = 232/667 (34%), Gaps = 76/667 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNK 67 + + + I + G + G + K+ I + +R +++ ++ Sbjct: 2 NLLTKPLLELKEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A ++ +MK + + + P+ D I RL Sbjct: 62 IRAGEIQTDMKLYDKKAVI---------------YPAKDIMFFAADVHGNAIISGRLEVL 106 Query: 128 KAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 K ++E + ++ S+ A + + + ++ L+V D + RRL+EL Y + Q Sbjct: 107 KRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQ 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 +G F VRG++ DIFP +++ R+E + +E++ + FD + + + + +YP Sbjct: 167 VSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPA 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 T + ER + ++++ +E K K E R+ + + + G GI Sbjct: 226 TEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGI 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 ++Y + + T FDY + + +DE + + R + G+ Sbjct: 286 DSYINYF-----FDETETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTKGY 340 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 L D + L ++ + + + D + R V Sbjct: 341 ILSKQADTIWDYKKVLAKLESKSTVLLSLLETRTGDIKAKQRFDVLSRN---------VN 391 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + L+ ++ + +V+V + +K AE L E E YL T ER+ Sbjct: 392 PYNNSFETLIKDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYL----STDERV 447 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + GE V+ LR G + P + I ++D G + + + Sbjct: 448 PV-----SGE--VVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKKTN------------ 488 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 K +I E +E HGI G+ + + G Sbjct: 489 --------RKKKKIDGASIASFSELHEGDYVIHENHGI---GVYRGIEQFTVEGVTKDYV 537 Query: 607 KAKGRGK---SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 K G P D + S + KI ++ G + ++ ++R + Sbjct: 538 KVDYSGDVSIFVPTTNLDVLQKYSSANGAKPKIDKIGGQAWKKTKS-------KVRQSIS 590 Query: 664 QLRELFI 670 ++ + Sbjct: 591 EIARDLV 597 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 131/366 (35%), Gaps = 37/366 (10%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 FLS + + L A + +V +H + + +G Sbjct: 710 FLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAEIKYKDLGLLIIDEEQRFGVSHKEK 769 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + +SATP L S + D V +D I V Sbjct: 770 IKKLRENVD--------VLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEH 821 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEI 488 D+++ E I + N +V ++ L E G RV + H ++ E I Sbjct: 822 DDEIIREAINREIGRNGQVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNERELERI 881 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + GE DVLV ++ GLD+ V+ + I DADK G + L Q GR R+ Sbjct: 882 MIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLSQ----LYQLRGRVGRSSR- 936 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + + + E +R K + G G + D+ G K+ Sbjct: 937 --TSFAFLM-YKRDRMLKEIAEKRLAAIKEFTDLG---SGFKIAMKDLEIRGAGNLLGKS 990 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM-----QHAQNLE---FEEAAQIRD 660 + + V D+ K L +++ L+G + + A ++E + A IR+ Sbjct: 991 QSG-------HMEAVGYDLYCKMLNEEVKRLKGEKVAADEFETAVDIEASAYIPADYIRN 1043 Query: 661 QLHQLR 666 ++ +L Sbjct: 1044 EVARLE 1049 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 105/676 (15%), Positives = 232/676 (34%), Gaps = 74/676 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + F+P + + +E +DG + G + K + + ++ +V+ + Sbjct: 1 MKAIFEPVYNTAGVEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSD 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + F N Y P+ D I R+ Sbjct: 60 EGKARDMAEDARFFNGGN--------------VMYYPAKDVIFYNADVQGRQIAGERIRC 105 Query: 127 TKAM--------------------LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGM 165 A+ + +V ++ I + P D + + +++L G Sbjct: 106 IAAIIDRLNKSDIVKSGTEKSTEEASDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGD 165 Query: 166 IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLS 225 I+D + ++L + + R +G F +RG +IDIF +D+ +R+EL+D+E++ + Sbjct: 166 ILDVEDMAKKLTAMGFERFGMVEAKGQFAIRGGIIDIFS-YTDEAPVRIELWDDEIDSIR 224 Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 FD + + + +T++P T ++ + I Q +E+I+ E + K+ + + +++ Sbjct: 225 AFDADSQRSIENYKSYTVFPATEFLFTEDEIEQGIEKIRHEKDEQMKLFGADKRKRTKEQ 284 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTI 344 + + + L +YS+F+ + +L +Y P D L+VVDE Sbjct: 285 IEAGNHLNRMFDDALRTG----DYSKFIYTFA--DRVSSLAEYFPKGDTLIVVDEPVRLK 338 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + +E G+ LPS ++ V T Sbjct: 339 EHSDMTFYEYSESMKNRLESGYVLPSQTHMFMDMETAVLSMNGHKQLVLTTL-------- 390 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + + + L +IR+ VL+ ++ A + + Sbjct: 391 -EYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRIVD 449 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G Y + + + G V+V L G + P V I + D Sbjct: 450 DLGRLGIESFYT---------EDSNKSMAGG--LVMVTYGSLHRGFEYPLQGFVCIAEND 498 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + +R + +GK I +++ + K + + G+ Sbjct: 499 IFTEKKRKRVKK-------KEYDGKNIAGFNELNIGDYVVHENYGIGQYKGIEKIKVEGV 551 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGK-SRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + D + T+ K + VE + + ++ + Sbjct: 552 EKDYIKISYAD--NSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSKVHSAV 609 Query: 644 MQHAQNLEFEEAAQIR 659 + A++L A + R Sbjct: 610 EEVAKDLVELYATRQR 625 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 121/351 (34%), Gaps = 38/351 (10%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L + +V +H + + + +G + Sbjct: 744 IEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKL--------KN 795 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAA 444 + +SATP L S + D V +D + V D+++ E I + A Sbjct: 796 NVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELA 855 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N +V R ++ +++E V Y H + E +I+ D GE DVLV Sbjct: 856 RNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVS 915 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+ + + I DAD+ G + L Q GR R+ Y + Sbjct: 916 TTIIETGMDISNCNTMIIEDADRFGLSQ----LYQLRGRVGRSSR---TAYAFLL-YRRD 967 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 K + E +R + + G G + D+ G N+ G Sbjct: 968 KVLTEVAEKRLSVIREFADFG---SGFKIAMKDLEIRGAGNVLGNSQHG--------HMA 1016 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQL 665 V D+ K L Q ++ L+G+ ++ + A I+ + +L Sbjct: 1017 AVGYDLYCKMLNQAVNNLKGIKNEYEFETTIDVDVDAYIPATYIKSEYQKL 1067 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 133/681 (19%), Positives = 225/681 (33%), Gaps = 81/681 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A + + Sbjct: 10 GPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETF 69 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F V + P D ++ +E +R+ +L Sbjct: 70 QDLSLFLGSGKVLLY-------------PPWDIQTTDMFALQRDVELVRMEVLARLLTDE 116 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+VAS+ A+ P L L L G + + ++ +L Y R +G F Sbjct: 117 PAVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEF 176 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 177 SLRGHVLDIFPPL-EDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSE 235 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-------LEMMNELGYCSGI 306 ER +A++ I+ AA ++L E T F+ E + S Sbjct: 236 ERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPT 295 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG-DRARKETLVEYG 365 EN + T FDYLP + +V+D++ + DR + E Sbjct: 296 EN-----ATATQAVRLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGK 350 Query: 366 FRLPSA------------LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 F L L E AL T Y S G + + Sbjct: 351 FYLEREASYVTKDAFIKDLRRFQRMILEGLALGRLTEYASGN-GEKTQASQYESLPLPLA 409 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L D T + L+ IR+ V K + + L + V Sbjct: 410 TDPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPV 469 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 R + I VL + L P++ L AI + + G Sbjct: 470 RTPEGSL-------ISEAFLHSGPGVLSLREGRLSRSFLFPDLKLAAISEEELFGK---- 518 Query: 533 RSLIQTIGRAARNVNGKAI--LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + GR R+ +GD ++EHGI Sbjct: 519 ----KITGRRIRSAREGYFLRSFGDLKEGDYV---------------VHKEHGIGLYQGL 559 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 +K+ + G PI D + + P+ K+ +L G + Sbjct: 560 QKLSVGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRE- 618 Query: 651 EFEEAAQIRDQLHQLRELFIA 671 +++ + ++ E +A Sbjct: 619 ------RVKKSIQEVAEELVA 633 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 124/402 (30%), Gaps = 37/402 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ + Q Q M + Y Sbjct: 684 PMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSRMKD--YPI 741 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE +RF ++ + L + +V +H + + + + Sbjct: 742 RIEALNRF----KSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEEQRF 797 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 G L + ++ATP L S + D + T D I Sbjct: 798 GVAHKEKLKKL--------RTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTI 849 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + + + + IR+ A N +V R + +E+ +H + Sbjct: 850 KTYVLEFNEETIREAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMK 909 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ E +VLV ++ GLD+P + + + AD+ G + L Q GR Sbjct: 910 PREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQ----LYQIRGR 965 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-G 600 R+ Y + P + ++R + E G G D+ G Sbjct: 966 VGRSSEE---AYAYLLVPK-GVLLSRDAQKRLQVIMDFSEPG---SGFRIASSDMEIRGG 1018 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 N+ T G V ++ + ++Q I E++G Sbjct: 1019 GNLLGTSQSG--------HVSAVGYELYTELMEQTIREIKGE 1052 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 113/656 (17%), Positives = 222/656 (33%), Gaps = 56/656 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF + E +R L L DG A +LG K I + A +V+ ++ Sbjct: 7 AFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKR 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A QL E++ F Y P+ D + + + + R+ A +A Sbjct: 66 ARQLAEELEFFTEN---------------VFYYPAKDLLFYQSDIRSNVLTRQRMQAVEA 110 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 111 LRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV---STIPRFTIYP 245 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + + + I P Sbjct: 171 HPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVP 229 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V E + + +E I+ + E+ K E R+ +E + Sbjct: 230 SAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQ 289 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E++ + + + +L DY+P DG++ +D + + +E G Sbjct: 290 VESHLTYFT-----DQTLSLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEEG 344 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + L + + + + +V + I + Sbjct: 345 YILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGL---EVREHFHI------RIRQG 395 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + LL ++R+ +++ ++ A L + L + V Y V+ Sbjct: 396 SVYNNSYELLLKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFYTEDPEHEVK- 454 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E +++V L G ++ + V + + D G R R R+ Sbjct: 455 ----------EAEIMVTRGSLSAGYELTDAGFVLLTEEDLFGGRRKRRKRG------RRH 498 Query: 546 VNGKAIL-YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+AI + +K E +T + + D I Sbjct: 499 REGEAIASFAQLHEGDYVIHENHGLGIYRGMEKI-EVDQVTKDYIKIEYADSGI--LYIL 555 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 ++ K + + + ++ + A+ L A + D Sbjct: 556 ASQMDLLQKYAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQED 611 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 21/277 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + +SATP L S + D + ++ V Sbjct: 764 EQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILDEAPMERTPIQTFV 823 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 D+++ E + + A ++ D+T L++ Y H + Sbjct: 824 FEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQKLLPEAHVAYAHGRMSQTRL 883 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ D GE D+LV ++ GLD+ V+ + I DAD G + L Q GR R+ Sbjct: 884 ENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADNMGLSQ----LYQLRGRVGRS 939 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + E +R K + G G + D+ G Sbjct: 940 NRTAYAFFMY----RRGKLLKEVAEKRLLAIKEFSDLG---SGFKIAMRDLEIRGAGNVL 992 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 +++ ++V D+ K L + + + +G Sbjct: 993 GESQSG-------HMESVGYDLYCKMLGEAVRQEKGE 1022 Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 6/161 (3%) Query: 379 FEEFEALAPQTIYVSATPGNYEL-EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + Q + A P + + V + + ++D +I + + L Sbjct: 614 YAYGPDTVWQREFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALR 673 Query: 438 EIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + A ++V+ T ++ + + + + +V L + ++ + + +L Sbjct: 674 AAFKAAQEGKQVVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELA 733 Query: 494 LGEFDVLVGINLL-REGLDMPEVSLVAILDADKEGFLRSER 533 G D+++G + + ++ L+ I + + G E+ Sbjct: 734 SGRVDIVIGTHRALSRDVVFRDLGLLIIDEEQRFGVRHKEK 774 >UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular organisms RepID=A9U6S5_PHYPA Length = 804 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 240/371 (64%), Positives = 282/371 (76%), Gaps = 3/371 (0%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 I+ EL R + L KLLE QRL QRT++D+EMM E+G+CSGIENYS L+ R G Sbjct: 7 NIERELEERLEELRSQGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGAT 66 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P TL DY P D L+VVDESHVT+PQI MY GDRARK LVE+GFRLPSALDNRPL FEE Sbjct: 67 PYTLLDYFPDDMLIVVDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEE 126 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 FE+ Q IYVSATPG YE+E +V+Q++RPTGLLDP+IEVRP Q+DDL+ EIR+ Sbjct: 127 FESKVNQIIYVSATPGPYEIEHCDT-MVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRE 185 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 R +ERVLVTTLTK+MAEDLT+YL+E G +VRYLHSDI T+ERM I+RDLRLG F VL+ Sbjct: 186 RIDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLI 245 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 GINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAARN G ++YGDKIT SM Sbjct: 246 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESM 305 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 KAI ET+RRR Q YNE+HGITPQ + KKV D+ +A++KA G P + Sbjct: 306 DKAIKETQRRRTMQIAYNEQHGITPQTIRKKVRDV-IEATKVAESKADPFGAC-PECDGL 363 Query: 622 NVPMDMSPKAL 632 V M + P+ L Sbjct: 364 GVKMIVDPELL 374 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 110/659 (16%), Positives = 228/659 (34%), Gaps = 67/659 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 ++ + +RL EG+ Q + G G+ +TF +A V L RP +V+ N Sbjct: 1 MSKNIFSLMQENSEFKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITEN 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + +A ++ +++ F + +F + ++ R+ Sbjct: 60 EQVAREIAEDLEFFLGDKTSRFFYREGFLFDLT-------------VREGGELKASRIEL 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 K + V + A+ P + + L VG +++ ++R L+++ Y R D Sbjct: 107 LKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVD 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F RG ++D++ ++ R E F +E++ L D + + + + IYP Sbjct: 167 QVEAPGQFSQRGGIVDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYP 224 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + +++ ++I ++ + K L++ NK RL ++ E++N LG Sbjct: 225 AEVAVAEEDLLLEVKQKISADIEQQVKKLIQQNKREAAGRLKEKGA---EVLNILGKSEV 281 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 IE + +L DY + L+ +DE QI + + R + G Sbjct: 282 IEKLLPYFWSG------VSLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGG 335 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + + + L + +++ D + R Sbjct: 336 YTLPKQAEVFYEEEQLMALLRGRIAVITSLLPKTPRFIGDYDPHNFAGRKPPN------- 388 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +I+ A N R+ + + A L L + ++ E+ Sbjct: 389 --YLGKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFV-------EK 439 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E+ R + +G+ +L G + P+ L+ D + G R +G A Sbjct: 440 FEVEIAPRE----IKIGLGVLNSGFEFPQQKLLVYTDVELAGRAVKARVTKAVLGERA-- 493 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + +P + K E G L G++ Sbjct: 494 --------EEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAY-----QGEDRLY 540 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSP------KALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + G + V D P +S + ++ ++ M + L + A+ Sbjct: 541 VPPEQVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKP 599 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 129/415 (31%), Gaps = 42/415 (10%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A Q E SG R LS Sbjct: 658 ALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKER------FSGYPVEIRLLSRFQTARE 711 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + L + +V +H + Y + +G L + Sbjct: 712 QKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVD- 770 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IR 440 + ++ATP L + + D V T + V + ++ + IR Sbjct: 771 -------VLTLTATPIPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIR 823 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFD 498 + +V +++ +++ H + + ++ + G++D Sbjct: 824 RELGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYD 883 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ G+D+P V+ + I +AD+ G + L Q GR R+ I Y + Sbjct: 884 VLVSTTIIETGIDLPNVNTLIIKNADRFGLAQ----LYQLRGRVGRSNR---IAYAYLM- 935 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 K + E +R K E G GL + D+ G + Sbjct: 936 YEKDKVLREAAEKRLAAIKEFTEFG---SGLKLAMRDLEIRGAGNLLGPEQ-------HG 985 Query: 619 EPDNVPMDMSPKALQQKIHELEGLM--MQHAQNLEFEEAA-----QIRDQLHQLR 666 V DM K LQ+ + EL+G + + LE A I D+ ++ Sbjct: 986 HIAAVGFDMYMKLLQETVAELKGQVTSEEVEPQLELNLTAYIPESYIPDEKQKIE 1040 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 120/667 (17%), Positives = 215/667 (32%), Gaps = 80/667 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F + P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELSFFTGGDEQL----------PVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAE 178 RL + R ++V ++ + P YL L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP SD + R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGSD-LPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + P + + I ++ E K + ++ Sbjct: 244 EKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKEC-----------------PVFQDIS 286 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+E Y LFDYLP + L+ + + + R Sbjct: 287 AGISPPGVEYYLPLFFDSC-----SNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYES 341 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + LP + + ++S N LE+ G +P L Sbjct: 342 RRVDPLRPLLPPKDIYLSIDELYTQLKPYSRTFIS----NDILEERAGHYNFASCQPPNL 397 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 +R A Q + + RVL + E L E L R Sbjct: 398 P-----IRAQAEQPLAAIEAFL--MEYHGRVLFCAESAGRRETLLELLGRIRVRPAPA-- 448 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 E + + + + I L +GL + V I ++ G ++ Sbjct: 449 --------ESWQAFLSSKESIAITIAPLEQGLQQQQPDTVLIAESQLFGERIQQQRRR-- 498 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + + + +HG+ + + Sbjct: 499 ----------------KQAQDNSELVVKNLTELKIGAPVVHIDHGVGRYRGLETITVDNQ 542 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + A P+ + + +H+L Q A+ + A QI Sbjct: 543 TNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKLGSESWQKAKR---KAAEQI 599 Query: 659 RDQLHQL 665 RD +L Sbjct: 600 RDTAAEL 606 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 136/437 (31%), Gaps = 38/437 (8%) Query: 229 PLTGQIVSTIPRFTIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + + + + P V + ++ A Sbjct: 641 PDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLA 700 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + + E + IE SRF + + + + L + ++ +H + Sbjct: 701 QQHYESLKDRFAE--WPITIEVLSRFRTTKEV----NQVLERLAEGKVDIIVGTHKLLQP 754 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G R + + + + ++ATP L S Sbjct: 755 DIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEID--------ILTLTATPIPRTLNMSMA 806 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T + V T + ++ E I + +V E + Sbjct: 807 GIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARE 866 Query: 466 LEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E R H + + ++ D F+++V ++ G+D+P + + I A Sbjct: 867 LQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRA 926 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + Y +TP +A+ + +R + E+ G Sbjct: 927 DKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPER-RAMTDDAVKRLEAISAAEDLG 978 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GL 642 G D+ G + + + + + + L + + + G Sbjct: 979 ---AGFTLATYDMEIRGAGELLGEEQSG-------QIQTIGFSLYMEMLDRAVKAIRQGK 1028 Query: 643 MMQHAQNLEFEEAAQIR 659 Q L+ +R Sbjct: 1029 QADIEQALKESIDINLR 1045 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 214/648 (33%), Gaps = 70/648 (10%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + L LE G + G++GS KT ++ ++ +++ N+ A +L ++ Sbjct: 11 PELSALWPKLETGR--HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLS 68 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + V F P D + A + R++A + + ++ Sbjct: 69 SLLGDALVYDF-------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGII 115 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V S++ + P + L + + +D + + ++L + Y R+ G F +RG Sbjct: 116 VTSLAGYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRG 175 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P DD +R+ELFD E++ + FD T + + + + I P T + + + Sbjct: 176 GIIDIYPLNQDD-PIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLT 234 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A I ++ K+ + T L +L EN + L Sbjct: 235 DAGARIGKQ------ATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLA--LYAPE 286 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + DYL D L+ D+ + + + L E G RL N + Sbjct: 287 LYPEHHRITDYLAGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEG-RLLPKTPNPTI 345 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + P+ G +L V P V+ +Q+ L + Sbjct: 346 QALNQRDRHPRLYLSLFQKGMGQLRLDSLTNV-----------PSRNVQQFFSQMPLLKT 394 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E + + V+ K + L+ L + L G+ Sbjct: 395 ETDRWVKQKQTVVFLVSDKNRLDKLSATLHDFEISNVVTE-----------PNQLLSGKV 443 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 + L+ G ++P++ LV + + + + R+ QT+ R Sbjct: 444 Q--LTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARHQTLANTER-----------LR 490 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + K +Y + G+++ + I+ + + Sbjct: 491 SYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIPVDQLNLVQKY 550 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 V D +++L G Q + I D+L L Sbjct: 551 VSADGK---------TPNVNKLGGTEWQKTKRKVAARIEDIADELIDL 589 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 115/365 (31%), Gaps = 34/365 (9%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS L + +V +H + + + +G + Sbjct: 698 IGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHK 757 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + ++ATP L S V D V T + V Sbjct: 758 ERIKQL--------KSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVM 809 Query: 430 TQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERM 486 Q ++ E I + +V E LEE Y H + + Sbjct: 810 EQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLE 869 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +I D G +DVLV ++ G+DMP + + I +AD G + L Q GR R+ Sbjct: 870 NVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQ----LYQLRGRIGRSS 925 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + Y + K + E +R + K E G G + D+ G Sbjct: 926 R---VAYAYFM-YQPMKVLNEVAEKRLQAIKDFTELG---SGFKIAMRDLSIRGAGNLLG 978 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQIRDQL 662 K + D+V D+ + LQ+ +++ G +L E A D + Sbjct: 979 KQQHGF-------IDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLGLE-AYLPTDYV 1030 Query: 663 HQLRE 667 R+ Sbjct: 1031 ADSRQ 1035 Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARK-ETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 G +I + + E G+ D + +EF Sbjct: 564 GGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQ 623 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 SA ++E +D ++ + + L + ++V Sbjct: 624 LRSAKEIKRDME------------KPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVA 671 Query: 451 VTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-L 505 + T ++ + + + + ++ L + I+ L+ G D++VG + L Sbjct: 672 ILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRL 731 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSER 533 L + + ++ L+ I + + G ER Sbjct: 732 LSKDVAFRDLGLLVIDEEQRFGVKHKER 759 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 105/662 (15%), Positives = 228/662 (34%), Gaps = 78/662 (11%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L++ G + + G++ S K IA Q+ +++ N A ++ Sbjct: 10 KEDKRFQELDQVF--GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEA 67 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 ++ ++ + + P D E+ ++ + + R+ A+ Sbjct: 68 DILQYVSGEEIYKY-------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHGEK 114 Query: 136 VVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 + + ++ + P +++ + L VG ID L +L + Y R G F Sbjct: 115 GLFIVPLNGLKKWLTPVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFS 174 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDI+P +R+ELFD E++ + FD T + + I + Y+ E Sbjct: 175 LRGGIIDIYPLIG--SPVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDE 232 Query: 255 RIVQAMEEIKEELAARRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 I ++K R + ++ + E +L + T FD +++ L Sbjct: 233 VISHLQTQLKAAYEDTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAF------ 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P T+ DY D ++ VDE + + L+E G Sbjct: 287 --------MYDQPSTIIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISNLIESGNGFI 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 ++++ FE L + T + ++ +P V+ Sbjct: 339 GQ---SFMQYDGFETLLDERPVAYFTLFTSSMPVELDHIIKFSCKP---------VQQFY 386 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q D + SE ++ + ++V T+ E + L E V H D Sbjct: 387 GQYDIMRSEFQRFIHNDYAIVVLVETETKVERIQSMLNEMHIPV-VTHID---------- 435 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + G+ V+ G L EG ++P + LV I + + + ++ + K Sbjct: 436 QASTSGQAVVVEGS--LSEGFELPYMQLVVITERELFKTKQKKQRKRTKTM----SNAEK 489 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + R + ++ + + G + Sbjct: 490 IKSYQDLNVGDYVVHVHHGVGRYLG------VETLEVGEQHRDYIKLQYKGTDQLFVPVD 543 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + + V ++ ++ K + + + + Q +++ E L++ RE+ Sbjct: 544 QMDQVQKYVASEDKSPRLN-KLGGTEWKKTKAKVQQSVEDIADELI-----DLYKQREMS 597 Query: 670 IA 671 + Sbjct: 598 VG 599 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 152/472 (32%), Gaps = 54/472 (11%) Query: 217 FDEEVERLSLFD--------PLTGQIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEE 266 F + E S F+ P + + I P + + ++ Sbjct: 602 FGPDTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAA 661 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A + + Q + +E M + + +S + Sbjct: 662 FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP------VEIQLISRFRSTKEVKETK 715 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + L + + +V +H + + + +G R + Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTL--------KNN 767 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAI 445 + ++ATP L S V D V T + V Q + + E + + + Sbjct: 768 VDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSR 827 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +V + + E L+ H + + E + E+D+LV Sbjct: 828 DGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTT 887 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I +AD+ G + L Q GR R+ I Y + P+ K Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHPA-NK 939 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ET R + K E G G + D+ G K + D+V Sbjct: 940 VLNETAEERLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSV 989 Query: 624 PMDMSPKALQQKIHELEGLMMQH--AQNLEFEE-------AAQIRDQLHQLR 666 D+ + L++ ++E G+ + ++E E A I+++ ++ Sbjct: 990 GFDLYSQMLEEAVNEKRGIKEETPDVPDVEVELNLDAYLPAEYIQNEQAKIE 1041 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 265 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 199/656 (30%), Gaps = 63/656 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L + + GV + ++ +P +V+ + A Sbjct: 4 LTKIYEDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L + + + PS + S++++ E R++ + Sbjct: 64 RNLTEYLNDIEEN--------------ICEFFPSRELNFYNAKSLDDNAEDQRVNVLFKL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V + A+ K + +I+ + +L L+Y R D Sbjct: 110 LNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIES 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG ++DIFP S +R+ELFD+E++ + F+ T + + I + Sbjct: 170 KGQFAIRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSEL 228 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + I++ L R + E + E S +E Sbjct: 229 IIEDSKKESIINSIQKNLDKRV-------DHPIFGENVDNVKDKFEKLMEYI-RSDLEYE 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 +S + T+FDY D ++++++ + LVE G L Sbjct: 281 IDLVSCFLTKKDYDTVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVLS 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + + + +T + + Sbjct: 341 KHEQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLKTLEAPN---------FN 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ I+ + + +V L + +G T+E + Sbjct: 392 KNIDSLVENIKSNSLRGFKQIVFAANVERKNMLKDLFLTNGIP---------TLEAEDYN 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +++ VL+ L G ++ + + I + G + R + + Sbjct: 443 ANIKS--SQVLITQKNLPNGFEIKDPKYLIITYKEIFGREKQLRKRKKKK-----STGQD 495 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + Y D +Y I G+ K + I + Sbjct: 496 IVNYSDLNIDDY------VVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLMIPTD 549 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + NV + +++L G A+ + ++ D L +L Sbjct: 550 QMNLVQKYIGGGNVK--------KPSLNKLSGNDWAKAKQKAKKSVDEMADDLVEL 597 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 138/445 (31%), Gaps = 42/445 (9%) Query: 230 LTG-QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 + + + I + P + + I+ A + Sbjct: 629 DSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILA 688 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q E + Y +E SRF+S + + + ++ +H + + Sbjct: 689 QQHFNTIKERFRD--YPIRVEMMSRFVSPARQKQIMKDV----QRGLVDLLVGTHRILSK 742 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G R L + + + +SATP L+ Sbjct: 743 NLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVD--------VLTLSATPIPRTLQMGLT 794 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + D V L+ + I + ++ + + Sbjct: 795 GIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQMEFK 854 Query: 466 LEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E + H ++ E ++ D + G +D+L+ ++ GLD+ V+ + I +A Sbjct: 855 LKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNA 914 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + T K++ E +R K E G Sbjct: 915 DKMGLSQ----LYQLKGRIGRSDR---TSFAYF-TYEGQKSLTEISEKRLMAIKDFTEFG 966 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 G + D+ G +++ + D+ K L+Q + E +G Sbjct: 967 ---SGFKIAMRDLELRGAGNLLGESQ-------HGHIAKIGYDLYVKLLEQAVREAKGET 1016 Query: 644 MQHAQNLEFEEA----AQIRDQLHQ 664 + +N E D + + Sbjct: 1017 ISENKNTVIIEIKVNGYIPEDYISE 1041 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 262 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 100/648 (15%), Positives = 199/648 (30%), Gaps = 61/648 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + + L GV GSG + A + A +V+ P++ A E++ + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P+ + Y P + K S + R++A +L RR+ ++V Sbjct: 62 LPKGK-----------RRVIYFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 V + + + ID+ ++ RL Y R + G + VRG Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F S +R+ELF + VE L F P+T + + I I P V + + Sbjct: 171 ILDVFSP-SATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDPAELPE 229 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + +++ A + + ++ + E G G+E + Sbjct: 230 ILGRLRKAGADAGVDPV-------------VIRGHVDKIREEGRFPGMEGMLSIVY---- 272 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 + DY+P L +++ + R + + + Sbjct: 273 -PELDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALAENRLSVTPESLYIEW 331 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + L + E + T L + L Sbjct: 332 SQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTLKGEGKTEALFQPLADW 391 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + R + + ++ L L +G +L E+ + G + Sbjct: 392 FLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKG------FEEVENQ-KPGIYC 444 Query: 499 V-LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 + L G PE + + + + G R R+ G I Sbjct: 445 IPGYASGNLTRGFVFPEQGIALVTNQEIFGAKRR------------RSAGGTKRAKSQFI 492 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 TP K E + EHG+ + G I + P+ Sbjct: 493 TPEELK---------EGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDDRLYLPV 543 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + + ++ G Q ++ +E ++ +L +L Sbjct: 544 DRMEMVEKYIGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKL 591 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/432 (16%), Positives = 132/432 (30%), Gaps = 40/432 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ A + Q E Y Sbjct: 641 PMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVVPTTILAEQHVHTFRERF--GNYPI 698 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E+ SRF + + L L VV +H + + + + Sbjct: 699 TVESLSRFRTKGEQAKIVKD----LEQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRF 754 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + AL R + + ++ATP L S + D + T +D Sbjct: 755 GVKHKEALKKRRSSVD--------VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPI 806 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V ++ D + + I++ ++ + E L++ VR H ++ Sbjct: 807 VSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVPEVRIAVAHGRLN 866 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + E D+LV ++ GLD+P + + I AD G + + Q GR Sbjct: 867 EASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQ----IYQLRGR 922 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ Y P + + ++R EH G + D+ G Sbjct: 923 IGR---GEEQAYAYLFVPEEHRLTRDAQKRLAALM----EHRDLGSGFQIAMKDLQIRGA 975 Query: 602 NI-AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ--HAQNLEFEEAAQI 658 G V DM K L + + +L+G + + + I Sbjct: 976 GSALGGSQSG--------HVAAVGYDMFLKLLDEAVADLKGQPLTDPLEPEINVTLSTFI 1027 Query: 659 RDQ-LHQLRELF 669 D+ + + + Sbjct: 1028 SDEYVQSIEQRL 1039 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 115/658 (17%), Positives = 222/658 (33%), Gaps = 65/658 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + E ++++E ++D + L G+T K + + + +++A N+ Sbjct: 2 NKLLENINSLEQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A + A PS D S++ R+ Sbjct: 61 RAEIYLDSINGIIENKA--------------YLFPSLDINFYNIKSIDNRKLSQRMEVLT 106 Query: 129 AMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +V+ ++ A+ L D + K + + IID + L L Y N Sbjct: 107 KLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +G F RG +ID +P D+ +R+ELFD+EV+ + LFD + + + I I P T Sbjct: 167 ENKGDFAKRGSIIDFWPVSYDN-PVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + ++ I E+ + E N+ + Q T F E M + S I+ Sbjct: 226 ELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYKQITAFIEESM----FVSNID 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L + + DY+P GL+ D+ I Y +E Sbjct: 282 -----LVNPYRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEV 336 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S R L + +E + I + L+KS +++ IE Sbjct: 337 FKSFEHARILIDDIYEQIDKFRIINLTS----ILKKSKLFNPRKIIEI-----KTIESEN 387 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +VD + + A +++VL+ ++ A L + YL D V ++ Sbjct: 388 FNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLID---------AYLEKDFTQVSKVG 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 I + + + G + ++ + G R R ++R Sbjct: 439 IGESFE--KIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARKKKSKNKTSSR--- 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 D I S Y I + K + I G + Sbjct: 494 -------DIINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKL--- 543 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + + + K+ L Q A+ + +I D L +L Sbjct: 544 ------FVPVDQMNLISKYIGSRGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVEL 595 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 135/448 (30%), Gaps = 46/448 (10%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + I+ A + Q Sbjct: 631 RSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPTTILANQHY 690 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ + +S PG + L A + ++ +H + + G Sbjct: 691 ETIKRRFDKFPVN------VQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDVGY 744 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + + + + + +SATP L+ S + D Sbjct: 745 KNLGLLIIDEEQRFG--------VKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRD 796 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + I + N +V E L +L E Sbjct: 797 LSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLIEL 856 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H I + + + + GE D+L+ ++ G+D+ V+ + I D+D G Sbjct: 857 VPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMG 916 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R Y T K + E +R K + + G Sbjct: 917 LGQ----LYQLKGRIGRGNR---SSYAYF-TYRTGKILSEISEKRLKSIRDFSDFG---S 965 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + + D+ K LQ+ + + G ++ Sbjct: 966 GYKIAMKDLELRGAGNLLGESQSG-------HVEAIGYDLYVKFLQEAVEKASGKEVEIK 1018 Query: 648 QNLE---------FEEAAQIRDQLHQLR 666 + + I DQ ++ Sbjct: 1019 DKSDVYIDIKVDGYIPNFYIEDQAQKIE 1046 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 242/669 (36%), Gaps = 92/669 (13%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 DQ +++ ++G L G++G+ K+ +AN ++ +++ ++ A + Sbjct: 5 EFFDQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANE 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 LY E+ E V F S D + A ++ RL A +L+ Sbjct: 64 LYDELSTLLGEEKVFQFF-------------SDDNIYAEFALASKDRIAYRLEALNFLLD 110 Query: 133 RR-DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R +V A+ P+ +L+ L LT G D ++ L++ Y + + Sbjct: 111 ERATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTP 170 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F +RG+++DI+P ++++ +R+E F +EV+ + FD + + ++++ R IYP + ++ Sbjct: 171 GEFSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFI 229 Query: 251 TPRERIVQAMEEIKE-------ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + + E + + N + + + + Y Sbjct: 230 LTDNEFDKGAKSLTEMTNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQNHYYH 289 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG--DRARKETL 361 + ++ + + +L +Y P + + +D+ + D E Sbjct: 290 KDLRKFAEYFYDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKA 344 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 +E GF + L + + P T + + G L Q Sbjct: 345 MERGFEGQTYLLDTM---AKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQH--------- 392 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 ++ Q++ +E+ + V++ + E L + L E + Sbjct: 393 --SMQQFFGQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLS-------LQ 439 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 V+R I ++G+ +++ L G + + LV + + + G +R +++ I Sbjct: 440 EVDRESI----QVGKVNLI--DLQLSNGFNFLDEKLVVMTEQEIFGKMRKKKARKLNITN 493 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 A R + + GD + + KY + G+++ + I Sbjct: 494 AERLKDYNELAVGDFVV-----------HKNHGIGKYLGLQTLEVGGMHRDYLTIQ---- 538 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL-----EGLMMQHAQNLEFEEAA 656 G S P+ D + + + KI++L M ++ +E Sbjct: 539 -----YQNGDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVE----- 588 Query: 657 QIRDQLHQL 665 I D L +L Sbjct: 589 DISDDLIKL 597 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 73/448 (16%), Positives = 143/448 (31%), Gaps = 47/448 (10%) Query: 233 QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + ++ I P + + ++ A + Q Sbjct: 633 RSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVLAEQHF 692 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 E + + +E SRF + L + ++ +H + + Sbjct: 693 NNFTERF--INFGVNVEVLSRF----QTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEF 746 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + L + ++ATP L S + D Sbjct: 747 FDLGLMIIDEEQRFGVKHKERLKEL--------KTQVDVLTLTATPIPRTLHMSMLGIRD 798 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + ++ + T + I + + +V E LEE Sbjct: 799 LSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYVYNRVDTIEQKVSQLEEL 858 Query: 470 GERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R +H + V+ + G++DVLV ++ G+D+P + + I +AD G Sbjct: 859 IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENADMMG 918 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y + K + E +R + K E G Sbjct: 919 LSQ----LYQLRGRVGRSNR---VAYAYFM-YRPEKILSEVSEKRLEAIKGFTELG---S 967 Query: 588 GLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-ELEGLMMQ 645 G + D+ G N+ ++ G D+V D+ + L++ IH +L + Sbjct: 968 GFKIAMRDLSIRGAGNLLGSEQSGF--------IDSVGFDLYSQLLEEAIHTKLGTSKQK 1019 Query: 646 HAQNLE-------FEEAAQIRDQLHQLR 666 N+E F A I D+ ++ Sbjct: 1020 RTSNVEISLELDAFIPAYYISDERQKIE 1047 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 222/658 (33%), Gaps = 70/658 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + I++++ GL+D + + +T K + L + + N Sbjct: 2 NKLIEQLINVDQIKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 + + ++ + + P DT S+++ RL Sbjct: 61 RSEKFLQDINQISAKAK---------------LYPDLDTNFYNIKSIDDKKINQRLECLI 105 Query: 129 AMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ + + V + +AI L D + K + + IID + L+ L Y D Sbjct: 106 SLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F RG +IDI+P +D +R+ELFD+EV+ + +FD T + + I I P Sbjct: 166 EERGDFAKRGSIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPAN 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + ++ I ++ + ++ K L + + + +++ Y + + Sbjct: 225 ELLYDSDDYKKVIKAISNDIDKKEVTNTKDQK------LVDKYKQIISFLDQKMYVANKD 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L E + DYLPA + + D+ + +E G Sbjct: 279 -----LINAYRTENYSSFIDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENGEV 333 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S + E ++ ++ ++I + S ++D IE Sbjct: 334 FGSFANYLLDSSEIYKNISEKSIINFTSILKRTKLFSPRKIIDL---------KTIEAEN 384 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ + A +++V V +K E+L + +H + E Sbjct: 385 FNKDIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF---------EE 435 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 D + +++ EG + +V L + G S+++ + + + Sbjct: 436 NSTDF--DKTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKKNNRKKVS------S 487 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 I Y D N GI + D+ I Sbjct: 488 KNIINYSDLEIGDYVVH-------------ENNGIGIYKGLTKIERNDVE--KDFILIEY 532 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V + + + K+ L L Q ++ + +I D L +L Sbjct: 533 RGNDKLYIPVDQMNLVSKYIGNRGEKPKLSALGSLQWQKSKQRAKKAVDEIADDLVKL 590 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/424 (13%), Positives = 125/424 (29%), Gaps = 37/424 (8%) Query: 233 QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + ++ A + Q Sbjct: 626 RSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILANQHY 685 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 +E + + LS + + + + +V +H + Sbjct: 686 HTMVERFKDFPITCAM------LSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVKF 739 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + + + +SATP L+ S + D Sbjct: 740 NKLGLLIIDEEQRFGVKHKEKFKKFKASID--------VLTLSATPIPRTLQMSLSGIRD 791 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + I + N +V E L +++ Sbjct: 792 LSTLDDPPEERLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIEKLFLKIKDL 851 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H + + I+ D G+ D+L+ ++ G+D+ V+ + I D+D G Sbjct: 852 VPEASIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMG 911 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R G Y T K + E +R K + + G Sbjct: 912 LSQ----LYQLKGRIGR---GYRSSYAYF-TYRSGKILTEIGEKRLKSIRDFSDFG---S 960 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + V D+ K LQ+ + + G ++ Sbjct: 961 GYKIAMKDLELRGAGNLLGESQSG-------HVEAVGYDLYVKFLQEAVEKASGKEVKIK 1013 Query: 648 QNLE 651 + Sbjct: 1014 LENQ 1017 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 257 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 113/646 (17%), Positives = 217/646 (33%), Gaps = 70/646 (10%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D TL G+ GS A + + P+ L + ++ F + Sbjct: 11 DKKKAITLSGLRGSSTALLAAQLAK--NSSCCCIVPDDHLIPIVVQNLQLFSEK------ 62 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL 148 PS + S ++ + RL++ ++V S+ A+ Sbjct: 63 --------TILSYPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114 Query: 149 GDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA-- 205 P L + L + G D+ ++ L L Y + G F VRG +IDI+P Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174 Query: 206 -----ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + + LR++ F + VE L FDP++ + + + P ++ +++ Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSA-KKSL 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +EI L R N +L TQ LE +N +GIE++ PG+ Sbjct: 234 QEIGTALQTRADKYSWNEEL---------TQTMLEKINTGQGIAGIESFLPLFF---PGK 281 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 +LFD+L D +V+ +S + Y+ + G L E Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRIEQNYLEVQGAG-TPALPPKEIFLSPE 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDDLLSEI 439 E + V + E + + + GLL I R + L+ I Sbjct: 341 EIKEKLSSFRQVRLSDIVSEQDNATSYN----TQSHGLLKQEIARRRAKEGILVPLIERI 396 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 RQ R+++ +++ ++L E LE H + + S + + + R + ++ Sbjct: 397 RQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK-----RAEQREI 451 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ + L EG +PE I +++ G +R K Sbjct: 452 LLCDHPLSEGFSLPEQGWDIISESELFGQMRLGSK---------------------KSKS 490 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 E E + +HG+ + ++ P+ Sbjct: 491 KKWAEPIEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDDKLYVPVDR 550 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + +I +L ++ EE ++ +L ++ Sbjct: 551 LNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEI 596 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 101/302 (33%), Gaps = 31/302 (10%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQ 441 + ++ATP L+ S + D V + VA D ++ E I + Sbjct: 770 MRAEVDILTLTATPIPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISR 829 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDV 499 + + + +E+ R H +DT E I+ E DV Sbjct: 830 ELRRKGQTFFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDV 889 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV ++ GLD+P + + I AD G + Q GR R+ + + P Sbjct: 890 LVATTIIESGLDIPSANTMIINRADNLGLAE----MYQLRGRVGRSSTQ---SFAYLLVP 942 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 S+ ++ R + NE G G + D+ G ++ Sbjct: 943 SLDSISKDSRERLRALMECNELGG----GFKLAMNDLQIRGGGNLLGISQSGN------- 991 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQ-----NLEFE-----EAAQIRDQLHQLRELF 669 + D+ LQ+ + +L+ + + +L+ E A + + + + + Sbjct: 992 IAAIGYDLYLDLLQKTVADLKAQKLSQEEQGIYDDLDPEINLQHSAFIPSNYITDIDQRY 1051 Query: 670 IA 671 I Sbjct: 1052 IV 1053 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 230/665 (34%), Gaps = 66/665 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTM 61 + + + I ++ D + Q + GV + K A V L+ + + Sbjct: 1 MMHSLTDFISRLPLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKIL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L + A QL +++ + V + S ++ + A + + Sbjct: 61 LLTDTQFRADQLTSDLEALLEDENVF-------------EMQSEESLATETAVASRDADL 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R+ A +A+L + + +VV +S + P+ + + +L + Q + ++L E+ Sbjct: 108 SRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y + G F VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + Sbjct: 168 YNKQTLVANPGEFSVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQ 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 ++ P + ++ PR ++++++ L K E+++LT+ LE Sbjct: 227 ASVSPVSDFLLPRAEFSDGLKQLEQAFVDY----LNKLKGAEKKKLTEFFNPLLEAAKHF 282 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 Y + +S F ++F+YL ++ L+++D+ Q + + Sbjct: 283 SYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITD 335 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + LP ++ + + + + + + Sbjct: 336 RLREFKLLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQL 395 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 +++ Q+ L ++ + VL+ + L L + G Sbjct: 396 ITRQMQQYFGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMNFA------ 449 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 I D+ G + +G L G ++PE +V + + + ++ QT Sbjct: 450 -------ITDDILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQTFS 500 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A K Y + T + R + E +G + + Sbjct: 501 NA-----EKITSYTELKTGDYVVHVNHGIG-RYEGLTTLEANGGKQDYITIAYAQKAKI- 553 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 P+ + V + + K++ L + + I D Sbjct: 554 -------------FVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAKVEDIAD 600 Query: 661 QLHQL 665 +L L Sbjct: 601 ELIAL 605 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 58/419 (13%), Positives = 127/419 (30%), Gaps = 36/419 (8%) Query: 233 QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I P + + + A Q Sbjct: 641 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 Q +E + E LS + L A L +V +H + + Sbjct: 701 QTAIE-----RFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 755 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + + + ++ATP L + D Sbjct: 756 DDLGLLIIDEEQRFGVKHKEKIKQL--------RANVDVLTLTATPIPRTLNMALVGARD 807 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + I+ + + I + + + + E ++ Sbjct: 808 LSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQRI 867 Query: 470 GE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 V Y+H ++ + +++ D G +DVLV ++ G+D+P + + + ++++ G Sbjct: 868 VPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 927 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y P + E ++R + + E G Sbjct: 928 LSQ----LYQLRGRIGRSNR---LAYAYFTYPG-DRQPTEDAQKRLEAIRDFTELG---S 976 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 G + D+ G K + D+V ++ + LQ+ + + +G + Sbjct: 977 GFKLAMRDLSIRGAGDLLGKQQHGF-------IDSVGYELYQQMLQEAVSQKQGKDKKV 1028 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 121/674 (17%), Positives = 220/674 (32%), Gaps = 76/674 (11%) Query: 21 IRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 ++ L L + G+ +T +A P + L A + + ++++ Sbjct: 19 VQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQ 78 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR----- 134 + + V F P+SD + S I RL + Sbjct: 79 WIGTDRVFLF-------------PASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVD 125 Query: 135 --DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 V+VA V A+ PD + L GM ++ RL + Y + G Sbjct: 126 VAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPG 185 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 RG +ID+F DD+ LR+E F +E++ L FDPLT + + I I P + Sbjct: 186 EVNRRGGIIDVFSPG-DDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPL 244 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 R + + R + L E + + R +R + G ++ Sbjct: 245 WRRDVALERMRAIDTSMLRHEALDEWLQAFDHIRNGERFE-------------GRALFAP 291 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 F R + P TL +LP +V+ E+ + + + R+ ++ G LP+A Sbjct: 292 FF--RDNPQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAGE-LPAA 348 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV------RPTGLLDPIIEV 425 L++ E ALA V+ + + + G P+ + Sbjct: 349 FPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLLSDPAPLPPSFSFGEQNGNPAPLTDT 408 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 R V D + L +R+ +D+ E L GERV + ++ Sbjct: 409 RNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRA-GERVVLITPQAARLQE 467 Query: 486 ---MEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + RD G +V+ G+ +L EG MP ++L D + G+ + Sbjct: 468 LVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYSDTEIFGWRQRR------ 521 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + EHGI + Sbjct: 522 ----------IIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIAVYEGLIRRSVGGI 571 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + A+G P+ + D V + ++ ++ L + A+ + Sbjct: 572 ERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGTQDWERAKR-------KA 624 Query: 659 RDQLHQLRELFIAA 672 R + L E I Sbjct: 625 RAAVQDLAEELITL 638 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 113/400 (28%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q M Sbjct: 688 PMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSRRMAAFP--- 744 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + + L + ++ +H + + + + Sbjct: 745 ---VRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRF 801 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + ++ATP L + + D + T D I Sbjct: 802 GVRHKERIKQL--------RTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + L+ E I + +V + + + L R H ++ Sbjct: 854 KTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLE 913 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D G DVLV ++ GLD+P + + I DA G + L Q GR Sbjct: 914 EHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQ----LYQLRGR 969 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y S + E + R + + E G G + D+ G Sbjct: 970 VGRSTQR---AYAYLFYKSERPSTPE-AQERLRAIQEATELG---AGFRIAMRDLEIRGA 1022 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + V D+ + L+Q + L+ Sbjct: 1023 GNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRTLKQ 1055 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 96/510 (18%), Positives = 187/510 (36%), Gaps = 56/510 (10%) Query: 16 DQPEAIRR-LEEGLEDGLAHQTLLGVTGSGKTFTIANV-IADLQRPTMVLAPNKTLAAQL 73 D ++ + L D + G++ K +A++ L P +V+ ++ AA+L Sbjct: 9 DTLTEYKKSVAHILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKL 68 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ + A F P+SD + + ++ E R+ A L Sbjct: 69 TEDINTMCGDTAAYQF-------------PASDLTLADTEAQSQEYEYKRIETLSAALSG 115 Query: 134 RDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++++S A L D+ K + L G I + L Y R D +G Sbjct: 116 KARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQ 175 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F RG + DI+P SD +R+EL+ +E++ ++ FD T + + T+ +I P + Sbjct: 176 FSFRGSLADIYPVSSD-YPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPCGETIFE 234 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + ++ + E+ +K E K R + D+ + + + Y Sbjct: 235 EGVLSGTLQTLLEKTEKNKKKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPL 285 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + P ++FDY L+V ES G + L E G L L Sbjct: 286 -----CYKEPGSIFDY---ASTLIVSESFTAAEAAKGAISAHLEDLKLLTEDG-VLCKGL 336 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D + E++ + + + + G D+ D + + I++ + + Sbjct: 337 DRYLMSKAEYQDTVKNKVRLYM---DTFIRGGGIDLSDILKVDS------IQLSAWSGEY 387 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L E+ + ++ T + A+ L E L + G + Y + Sbjct: 388 KMLFEELDNYSRNGYSCVIFGGTDKAAKILAEDLHDKGYKADYAKNPKK----------F 437 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILD 522 LG V+ G +L G + PE + + Sbjct: 438 YLGRITVVEG--ILSAGFEYPEEKIAVLTR 465 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 120/434 (27%), Gaps = 38/434 (8%) Query: 222 ERLSLFDPLTG-QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + S + + + I P + + ++ Sbjct: 611 DHFSYVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAI 670 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q Q L+ M G + LS + + L L +V Sbjct: 671 LVPTTVLAWQHYQTVLKRME------GFDIRVELLSRFRTAKEQKIILKKLEEGELDLVV 724 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + +G L + + +SATP Sbjct: 725 GTHRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVD--------VLTLSATPIP 776 Query: 399 YELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 L + + D V T D I V + I + N +V Sbjct: 777 RTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIE 836 Query: 458 MAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + H + E + + R L GE DVLV L+ G+D+P Sbjct: 837 SIYSCAADIHSMVPEANIGIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNC 896 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I +AD G + L Q GR R +A Y K + E +R Sbjct: 897 NTLIIENADCMGLAQ----LHQLRGRVGRTNR-RAYAYFTF---RRGKVLSEIATKRLDA 948 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + G G + D+ G +++ +V DM K L + Sbjct: 949 IREFTRFG---SGFRIAMKDLEIRGAGSVLGQSQSG-------HLASVGYDMYIKLLNEA 998 Query: 636 IHELEGLMMQHAQN 649 I E +G + Sbjct: 999 ILEQQGKAPEITPE 1012 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 115/660 (17%), Positives = 199/660 (30%), Gaps = 85/660 (12%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 D L +E + GV+G K I ++ A R +VLA ++ +L Sbjct: 7 LLDGVTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRL 66 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ V P+ D + E RL ML+ Sbjct: 67 CNDLSSMGTAALV---------------YPARDFNFRAAEGQSREYEHQRLQVMAGMLDG 111 Query: 134 RDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 VV++ + A PD L L G I L+ Y R Q G Sbjct: 112 DYQVVISCIDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQ 171 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTHYVT 251 F VRG ++D F +RVE + +E++ L FDP T + + T+ P T + Sbjct: 172 FAVRGGILDFFTP-DASAPVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLV 230 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 LA + + L + R +R + + + + + Sbjct: 231 SSPGS----------LAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADKFLP 280 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L P TL DYL + L+ E ++ + +E G Sbjct: 281 LLY-----PSPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEGILCKGL 335 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + L + T + +++ ++ Sbjct: 336 DAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPLSSLINL---------NARQLSVWGGG 386 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L ++ + R++V T+R A E L+ G Y R + Sbjct: 387 MQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEY---------RDDAKTL 437 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 G VL L G + P + I + R R N K I Sbjct: 438 FL-GRVTVL--PGSLSAGFEYPTANFALITHGHFAAAPKRARK---------RQKNAKEI 485 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 ++ P + H + QG+ K + + AKG Sbjct: 486 YSLSELAPG-----DYIVHSAHGVGVFEGIHKLEMQGVTKDYLKV---------RYAKGD 531 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P+ + D V + PK + +++ L G Q A+ A++R + + + I Sbjct: 532 ILYVPVTQLDMVSKYIGPKEEVKVRLNRLGGQDWQKAK-------ARVRSAVKDIAKELI 584 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 41/369 (11%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 LS + + L + ++ +H + + + +G Sbjct: 697 ILSRFRTPKQQAEILKQLKRGEIDMIIGTHRLVQKDVQFRDLGLVIIDEEQRFGVAQKER 756 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + +SATP L + + D D V Sbjct: 757 FKSVTKNVD--------VLTLSATPIPRTLNMALSGIRDMSSLEEAPQDRHPVQTYVLEY 808 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEI 488 ++++ +R+ +V E + L+ + H + E E+ Sbjct: 809 DQAVINDAVRRELRRGGQVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKMPEGELSEV 868 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R + E +VLV ++ G+D+P V+ + I DAD G + + I + Sbjct: 869 WRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQ-----LHQIRGRVGRSSR 923 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 +A Y +T + K + E ++R + E G G + D+ G NI + Sbjct: 924 RAYAY---LTFTRNKVLSEISQKRLAAIREFTEFG---SGFKIAMRDLELRGAGNILGGE 977 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE-------EAAQIRD 660 G + V DM + L + + E +G + A + E E +A Sbjct: 978 QHG--------HMETVGYDMYLRLLGEAVSEEKG---EEASSYELECLVDVQVQAHIPEG 1026 Query: 661 QLHQLRELF 669 + L + Sbjct: 1027 YIESLSQRL 1035 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 104/644 (16%), Positives = 203/644 (31%), Gaps = 76/644 (11%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +RL ++ G G++ + A + L R +VL ++ A ++ ++ Sbjct: 6 PEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLA 65 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 E + + + A V+ E RLS +A+ ++ Sbjct: 66 FLTGE--------------QVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLL 111 Query: 139 VASVS-AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V ++ A+ L + L VG D + L Y R +Q G F +RG Sbjct: 112 VCTIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRG 171 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++D + ++D +RVE F +E + + LFD T + V I P + Sbjct: 172 GILDFYSP-AEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLP-----Q 225 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A L A ++ + + L + + D E + E ++ Y + Sbjct: 226 FAPGGYAGLLEAMDGLIARAKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYPH- 284 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 T DY P D +++ ES + + L+E G L L Sbjct: 285 ----MATAADYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAG-VLAGELSEFAR 339 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--EVRPVATQVDDL 435 FEE + + V V Q R L ++ ++ ++ Sbjct: 340 TFEELCGVLEEWPVVYL----------DNFVGAQYPRRPRTLLNLLCKQLPSYGASLETA 389 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY---LHSDIDTVERMEIIRDL 492 +S++ N +V +++ A +L L E G + LH + Sbjct: 390 VSDLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAVDFLLH------------KLP 437 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G+ ++ + L G++ PE + + G + + + K Sbjct: 438 APGKA--VIAVGGLSGGMEYPEARCAVLTEGQAAGVKKKKVKAV--------TNRQKLGS 487 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA---- 608 Y D + R + K + G+ K V I G ++ A Sbjct: 488 YADLSVGDLVVHEHHGIGRYQGMVKMPVD------GIQKDYVKIAYAGADVLYVPATQLD 541 Query: 609 --KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + + ++ + + A+ L Sbjct: 542 LVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGL 585 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 98/309 (31%), Gaps = 27/309 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRP 427 + + + + +SATP L + + D D ++ Sbjct: 748 EQRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQPVQTYV 807 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GERVRYLHSDIDTVE 484 + L +R+ +V + E V H + E Sbjct: 808 LEHDWGVLFDAMRRELERGGQVYYLHNRVETITRTAARIREMLGEDVTVGVAHGKMSQEE 867 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +++ + GE DVLV ++ G+D+ + + I DADK G + + I Sbjct: 868 LNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDADKMGLAQ-----LHQIRGRVG 922 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NI 603 + +A Y +T K + E +R + E G G + D+ G N+ Sbjct: 923 RSSRRAYAY---LTFRRGKVLSEVASKRLGAIREFAEFG---SGFKIAMRDLEIRGAGNV 976 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LEFEEAAQIRD- 660 + G S V D+ K L++ + E G Q + AA I D Sbjct: 977 LGPEQSGFLMS--------VGYDLYLKLLEEAVLEERGEKAQIPAECSADLSVAASIPDR 1028 Query: 661 QLHQLRELF 669 + + Sbjct: 1029 YVPSPEQRM 1037 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 104/647 (16%), Positives = 213/647 (32%), Gaps = 70/647 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S F ++ R+LE+ + ++G++ K + + P +VL ++ Sbjct: 2 SIFHEILNKLPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEA 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L + + + P+ D +V+ E +RL+ Sbjct: 62 NAKKLSDDYNQMAGGELSAVY-------------PAKDFTFRPIETVSREYEYIRLNVLS 108 Query: 129 AMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ R+ VV A + +A+ P L+ + G + ++ LA Y R Q Sbjct: 109 RIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + VRG ++D FP + +RVE + +E++ +S F+ + + + + I P T Sbjct: 169 DGSAQYSVRGGIVDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ ++ + + D++ ++ S I+ Sbjct: 228 EIIFSSPEQLR---------EGINGLIRSLGSSPQADAAKLKLSNDIKRIDGGLDLSNID 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y + P TLFDY + LL V E + + L+E G Sbjct: 279 KYIPL-----AYDRPATLFDYFES-PLLFVSEWSDLKESARAYEFQYQEDLKILLEEGE- 331 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 L LD+ F Q V + D+ + + + + Sbjct: 332 LCKGLDSFVKPFASVSEQIAQGKTVFFD----TFAHANHDLRLKELITVNAM----QTSS 383 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + + L ++ A + V++ T T++ A+ L LE+ G + + T E Sbjct: 384 WSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATV---VPTGELT- 439 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G VL G +L G + P + I A + S+R + + G R+ Sbjct: 440 ------PGVVYVLAG--MLSSGFEYPAAKVALITHARIQNL--SKRKVKRRKGEEIRS-- 487 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 S + + QG++K + I G ++ Sbjct: 488 -----------LSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVLYVP 536 Query: 608 AKGRGKSRPIVEPDNVPM----DMSPKALQQKIHELEGLMMQHAQNL 650 + P ++ + ++ + + A L Sbjct: 537 VTQLDMVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADEL 583 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 37/369 (10%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + + L + ++ +H + + A + +G Sbjct: 695 IELLSRFRTPKEQKQVLQKLRTGQVDIIIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHK 754 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPV 428 + +SATP L + + D V D I+ + Sbjct: 755 ERFKEMF--------RGVDVLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVI 806 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERM 486 + I++ + +V + + + R H + E Sbjct: 807 EHDYGVIADAIKRELRRDGQVYYIHNRVESIQSCAAQISKLVPDARIGIAHGKMGENELS 866 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 I + L E D+LV ++ G+D+ + + I DAD G + L Q GR R+ Sbjct: 867 RIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLSQ----LYQLRGRVGRSK 922 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAK 605 +A Y K + E +R + + G G + D+ G I Sbjct: 923 R-RASAYFTF---RRGKVLTEIASKRLSAIREFTKFG---SGFRIALRDLEIRGAGSILG 975 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----LMMQHAQNLEFEEAAQIRD 660 + G + V DM + L + E +G + + +L E A D Sbjct: 976 ERQHG--------HMEAVGYDMYLRLLSDAVSEKQGVKPPTKVEECLIDLPME-AHIPED 1026 Query: 661 QLHQLRELF 669 + L + Sbjct: 1027 YIENLAQRL 1035 >UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 Tax=Rhizobium etli 8C-3 RepID=UPI00019032C1 Length = 411 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 158/434 (36%), Gaps = 34/434 (7%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ LE+ + Q + G+ GS KT A + ++L PN A QL +++ Sbjct: 11 PQVKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQ 70 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 P++ + F P + + A + R++ A+ E++ + Sbjct: 71 HVIPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIY 117 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 + V++++ +L+ L+ +G ID + R+L + Y R + + G F +RG Sbjct: 118 LLPVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRG 177 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P + +RVELFD E++ + F+ T + + + P + V E + Sbjct: 178 SIIDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLE 236 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 +E++++ L R E L + YS L Sbjct: 237 HGIEQMQKMLEKRLAATTEEADREF---LQDYFGQLTSSWQAGVPTEEAKFYSDLLY--- 290 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + T+ DY P++ LLVVD+ + + R + + + + Sbjct: 291 --QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQTFSADI 348 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + + T + G L ++ Q+ L + Sbjct: 349 QKIVQKEKFTTTFFSLFQKGMGNLRFQAIHNF-----------QYRTMQQFFGQMPLLKT 397 Query: 438 EIRQRAAINERVLV 451 E+ + + V++ Sbjct: 398 EMDRWRKQKQTVVI 411 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 102/671 (15%), Positives = 200/671 (29%), Gaps = 73/671 (10%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF ++ R ++ G + G+T S + A +P Sbjct: 1 MILPF--VRELFADVEKSPEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPL 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ P+ A +L P ++ + +P+ D ++ S + I+ Sbjct: 59 IVVVPSNRAAEEL-------LPIVQAYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQ 111 Query: 121 QMRLSATKAMLERRDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R +A ++ V+A V+ + Y + + G ID + L Sbjct: 112 EARAAALWKIVSGTARFVIAPFVATAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTS 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ D G + +RG ++DI+P ES+ +R+ELF +EVE + FD T + Sbjct: 172 GYSTVDVVEMPGEYALRGGILDIYPPESE-HPVRIELFGDEVESIRKFDTETQRSAGATD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + ++ +R D E + Sbjct: 231 EVVLLPLSDTPVREDILGSIHAKLS----------------------GRRLDADEETLEA 268 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + LFD LP + ++ D+ + + E Sbjct: 269 IARAEGVTVF-PGWEYYAGATANQRLFDLLP-NAAVLRDDPVKIESDFEAWWERVQQSHE 326 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 P L + P + Q I +L + Sbjct: 327 RSGVGHLVRPEDLLDSPDTW-------QQRIASLPGADVEQLGM-------YSESGEQIA 372 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 V ++ E++ RVL E L + E+ R Sbjct: 373 IQSQSTSKFHGSVPAMVEEVKALLTDGRRVLFAAANTGEVERLADIFSEYMVPFRV--GS 430 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSL 535 T E + + + L +++ EG+ MPE V D + Sbjct: 431 RSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESEVASAQ 490 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 R+ K + + + + EHGI K++ Sbjct: 491 QPKRSRS------KVSAF-----------LSDFRDLTINDYVVHVEHGIGQYQGLKEIAQ 533 Query: 596 ILALGQNIA-KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 A+G P+ D + S + ++ ++ L + + Sbjct: 534 GDGEPAEFMILEYAEGARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKA 593 Query: 655 AAQIRDQLHQL 665 + D+L +L Sbjct: 594 MKDMADELLKL 604 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 124/365 (33%), Gaps = 34/365 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +S + + + + + ++ +H + + + +G R Sbjct: 715 MISRFRTAKQQKEIVERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKER 774 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L + +SATP L S + D V T D + VA Sbjct: 775 LKQL--------RKEVDVLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKW 826 Query: 432 VDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEI 488 + L+ I Q ++ ++++ + E + + L H + + +I Sbjct: 827 DEKLIKSAIEQELDRGGQIYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDI 886 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + D+LV ++ GLD+P + + + AD+ G L Q GR R+ Sbjct: 887 MLKFMRHDADILVATTIIENGLDIPLCNTMIVNRADRHGLSE----LYQLRGRVGRSNRR 942 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 Y + P + + E RRR K + G G +D+ G N+ + Sbjct: 943 ---AYAYLLVP-PDRELTELARRRLAALKEFSDLG---AGFKIAALDLELRGAGNLLGGE 995 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQLHQ 664 G + + V ++ L++ + E++G + + + IR + + + Sbjct: 996 QSG--------QIEAVGFELYTTMLERTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKE 1047 Query: 665 LRELF 669 + Sbjct: 1048 ENQRL 1052 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 220/635 (34%), Gaps = 81/635 (12%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I +A + +P +++ N+ A + + ++ ++ +E FV Sbjct: 24 KNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELFVLD 83 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD-P 151 + + A + R+ +L R VV+A+ + P Sbjct: 84 GN-------------LATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAP 130 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 L+ K H VG I + + L + Y R + + G F +RG+++D++P + Sbjct: 131 ALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPL-DRESP 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 LR+E F +E++ + FD + + + +P T+ + +V E + +A E+ +L Sbjct: 190 LRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKEA 249 Query: 272 KVLLE-NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 LE + L +L L+ + + +L DYLP Sbjct: 250 AASLEIAQEALANGQLPDDCNRYLDYLLSKSF---------------------SLLDYLP 288 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 A GLL+ ++ + + M + + S R +A + Sbjct: 289 AKGLLLFNDWQLIAESVKNMGAIN-DDYLASQIASKMMTSRQKLRLDFDAVLKADCHHRL 347 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 YVS + S G + +P + +Q++ L +E+ A + V+ Sbjct: 348 YVSL------MAHSMGRLRFGQHLAWDSREP----QQFFSQMELLKTELDSYAKKGQTVV 397 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + ++R AE+ ++ + +D L+ G +++G G Sbjct: 398 LQVSSRRQAEEFNRSCHDYDIYLPLAEAD-----------GLKEGRAQLVIG--GYASGF 444 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 +P+ LV + + + + + I+T+ A R Y + + Sbjct: 445 VLPDSDLVYLTEKELFNQNKRSKKRIKTLENAQRLR-----SYTELKPGDYVVHVNHGIG 499 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 R E Q + I T KG P + V ++ + Sbjct: 500 RFEGIQTLETD---------------GKKRDYITITYQKGDQLFVPDDQLSLVQKYVASE 544 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 Q I++L G + I D L +L Sbjct: 545 GKQPHINKLGGSEWAKTKKRVAARVEDIADDLIEL 579 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 129/430 (30%), Gaps = 40/430 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q + Sbjct: 629 PMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDR------FK 682 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G S + L + +V +H + + + + + Sbjct: 683 GFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLKDLGLLIIDEEQRF 742 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + ++ATP L S + D V T + Sbjct: 743 GVAHKEKLKQLKTNID--------VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 425 VRPVATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V Q+ + E ++ +V E+ LE+ R Y H + Sbjct: 795 QTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEARIAYAHGQMS 854 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +I+ EFD+LV ++ G+DMP V+ + I DAD G + L Q GR Sbjct: 855 ENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ----LYQLRGR 910 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + K + E +R + E G G + D+ G Sbjct: 911 IGRSAR---LAYAYFL-YQPNKVLTEVGEKRLDAIRDFTELG---AGFKIAMRDLSIRGA 963 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 N+ + G D+V D+ + L I E +G N E + EA Sbjct: 964 GNMLGAQQHGF--------IDSVGYDLYSQMLADAIKERQGKKPVKKSNAEVDLGLEAYI 1015 Query: 658 IRDQLHQLRE 667 D + + Sbjct: 1016 PEDYIADQEQ 1025 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 108/688 (15%), Positives = 210/688 (30%), Gaps = 114/688 (16%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 P I++L + L+ + L +T ++ + P +++ A + E Sbjct: 3 DPITIQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARE 62 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM------ 130 + F + V P+ +T + S + RL+ + Sbjct: 63 LLFFGAQRGVHILP-----------FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKS 111 Query: 131 --------LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 L VV+ + +AI L + + +VG ++ L Y Sbjct: 112 GPISIGNELGDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGY 171 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 Q + G + RG +ID+FP D+ +RVELF +EVE + LFDP + + IP Sbjct: 172 NPVSQVSEPGEYAARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAV 230 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + P + + I +E L + +++ Sbjct: 231 EVLPVREVILNADTISCFRTAYREVFGGYAAEDL-----------------IYKEISQNR 273 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKE 359 G+E Y TLFDYLP L ++ D + + + R Sbjct: 274 TYQGMEQYLPLFY-----PDLDTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAY- 327 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP---GNYELEKSGGDVVDQVVRPT 416 + G D ++ L ++ +G +D + P Sbjct: 328 ---QAGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKPALDLDLHPI 384 Query: 417 GLLDPIIEVRPVATQ---------VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 + ++ + Q +D L +I R+ + T E + E L Sbjct: 385 PPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERMRELLT 444 Query: 468 EHGERVRYLHSD----IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 +H +V + + + + + L + +G + P +V I + Sbjct: 445 DH--KVSVVDGSSWSALLQADPRQPMLLLGD-----------VSDGFEHPTRHVVLISED 491 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + G R + + I E + +HG Sbjct: 492 NVFGVRIRRRQ---------------------ISRRYLDQLIASFADLNEGDAVVHVDHG 530 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + G + + A G P+ D V S + +Q + +L G Sbjct: 531 VGRFGGLVSLEVGQLKNDFLLIIYADGDKLYVPVENLDRVGKHSSGEEVQ--LDKLGGKR 588 Query: 644 MQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + A+ R ++ ++ E +A Sbjct: 589 WAKTR-------AKARKKILEMAEELVA 609 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 23/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAIN 446 + ++ATP L + V D + + D + I + I + Sbjct: 789 DILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELYRG 848 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + E + + E R H + + +++ + F++LV Sbjct: 849 GQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVCTT 908 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I ADK G + L Q GR R+ + Y + P + + Sbjct: 909 IVENGVDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSKHR---AYAYMLVPHLRRL 961 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 E+R E E G G D+ G NI + G + V Sbjct: 962 TKHAEKRLEAL----ESLGELGAGFMLATHDLEIRGAGNILGDEQSG--------QIKEV 1009 Query: 624 PMDMSPKALQQKIHELE 640 ++ + L++ + L+ Sbjct: 1010 GFELYNQMLREAVVALQ 1026 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 60/149 (40%), Gaps = 6/149 (4%) Query: 391 YVSATPGNYELEKSGG-DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + S P ++++ + V + + +D ++ + + L + A ++V Sbjct: 632 FASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVCGDVGFGKTEVALRATFRAAMDGKQV 691 Query: 450 LVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN- 504 + T ++ E+ + L + +V L E+ I + G DV+VG + Sbjct: 692 AILVPTTILAQQHYENFAKRLAGYPIKVDILSRFRTPKEQKATIEAVGHGTIDVIVGTHR 751 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSER 533 LL+ + ++ L+ + + + G ER Sbjct: 752 LLQTDVKFKDLGLLVVDEEQRFGVSHKER 780 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 102/631 (16%), Positives = 188/631 (29%), Gaps = 84/631 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + G+ ++ A + QRP ++L PN + E + F P+ Sbjct: 22 IYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPA------------P 69 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MM 158 P + + RL+ + E R V + A +SA+ P +L Sbjct: 70 LVFPDREILPYDRLAPPADATATRLATLATLPEWRGVCL-APLSAVLQRLPPRSFLDQHA 128 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L VG + +RL + Y + + G RG +ID+FP+ S + R+ELFD Sbjct: 129 FVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGS-PLPYRIELFD 187 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 VE + FDP T + + + ++ P + + + + Sbjct: 188 RVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSG--------- 238 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + G E+Y L + P DG++ + Sbjct: 239 --------DPQRAEIYRAASRGQAPQGAEHYLPLFFPEC-----SHLLMHFPVDGVVFL- 284 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + R E D L E+E + V Sbjct: 285 -PPGLEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEG 343 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + D P L L + RV++ + Sbjct: 344 DAERLPTAPLPDLHGSPEAPLAS--------------LDTFLRHLPTTGRVILAAESPGR 389 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE---V 515 E L+E L + G +H + G + + + L GL + E V Sbjct: 390 QEALSERLGKSGLLPSRVHD----------WPEFLAGTERIAITVAPLERGLLIKENGLV 439 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 L + +A G +R Q AR S+ + + + Sbjct: 440 RLALVSEAQIFG----DRVFAQRRSANARQ-------------RSIEGLVRDLGELQPGD 482 Query: 576 QKYNEEHGITP-QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 +EE+GI QG+ + + + A G P D + + A + Sbjct: 483 AVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARYVGNGATEP 542 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + L + + ++A +L + Sbjct: 543 VLSRLGSNHWEKVKAKARQKAVDAASELLDI 573 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 85/256 (33%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAIN 446 + ++ATP L S + D + T V D ++ ++ Sbjct: 752 DILTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRG 811 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V R E + L R H + E ++ D FD+L+ Sbjct: 812 GQVYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTT 871 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D P + + I ADK G + L Q GR R+ Y TP + +A Sbjct: 872 IIESGIDNPHANTILINRADKFGLAQ----LHQLRGRVGRSHQR---AYAYLFTPDL-RA 923 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + + RRR + E+ G+ G D+ G + + D V Sbjct: 924 MSDDARRRLDAIQSLEDLGV---GFALASHDLEIRGAGELLGEEQSG-------HMDEVG 973 Query: 625 MDMSPKALQQKIHELE 640 + + L + + Sbjct: 974 FTLFMEWLDDAVEAIR 989 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 97/657 (14%), Positives = 210/657 (31%), Gaps = 57/657 (8%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF + + + + L + + G+T + ++ I + + P Sbjct: 1 MILPF--VRDLLADLEHTASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPV 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++L + A ++ ++ ++ + +P+ D ++ S + ++ Sbjct: 59 VLLVADNKAADAMHLALRAGCE-------LTGAIAAERVLKLPAHDVLPFENMSPHPEVQ 111 Query: 121 QMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R + + +V+A V +A L Y + L G ID +L LA + Sbjct: 112 EQRATTLWKIATGDAAIVIAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASV 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + D G + RG ++D++ E+D +R+E F +E+E + FDP + + S + Sbjct: 172 GYEQVDVVEMPGQYTRRGGILDVYSPEADR-PVRMEFFGDEIETMRKFDPESQRSQSPLD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P T + + T + EM+ E Sbjct: 231 EARLLPLTETPVTERLLAAVHARL--------------------SGARFETNDEGEMVAE 270 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + + G TL D P +L V+E + Q+ + R + Sbjct: 271 MVAAGGVSVFPGWEFFAGVAGANKTLLDLFPR-CVLFVEEPGMIKNQVERWWNKVEQRHD 329 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 P + RP E PG + DV++ + Sbjct: 330 RSSIGTLIRPEDIYLRPELLEAQRKSH---------PGLDIDQLGAVDVLEDDETLGEIA 380 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER----VRY 475 + + +I+ R+L+ + E L L E+ R Sbjct: 381 FSSRPTLRFHGSIPAFVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRLGSRV 440 Query: 476 LHSDIDT--VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H+ +T E + DLR +++ + G+ +P+ +LV D Sbjct: 441 MHTGSETMYDEASHLGGDLRT---PIILR-APIATGVSLPDANLVVFGANDLNDEADVTA 496 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + A ++ L + I +E Q + + + Sbjct: 497 RPAARKSKTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEFAEEAK 556 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + ++ + P++ + + + ++ M A L Sbjct: 557 LYVPLTRLDLIQKYRSTESGPAPVLH------RLGTQQWAKTKARVKKAMQDMADEL 607 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 37/403 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q + + + + Sbjct: 659 TPMDRLLCGDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQ--FP 716 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + + + A + ++ +H + + + + Sbjct: 717 IHIEMLSRFRTAKEQKLIVERV----EAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQR 772 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + +SATP L S + D V T D + Sbjct: 773 FGVRHKERLKQL--------RAQLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMA 824 Query: 424 EVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 VA + L+ + ++ ++ ++E R H + Sbjct: 825 IQTIVAKFDEKLVRSAVEVELERGGQIYFVHNRVETIYEIAAKIQELVPHARITVGHGQM 884 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ E+DVLV +++ GLD+P + + I AD+ G L Q G Sbjct: 885 GEAELEKVMLAFMNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSE----LYQLRG 940 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + P + + E RRR K + G G +D+ G Sbjct: 941 RVGRSNRR---AYAYLMIPPEQE-LTEIARRRLAALKEFSDLG---AGFKIAALDLELRG 993 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 N+ + G + V ++ L++ +++++G Sbjct: 994 AGNMLGGEQSG--------HIEAVGFELYTTMLEEAVNKMKGQ 1028 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 118/658 (17%), Positives = 199/658 (30%), Gaps = 101/658 (15%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + + + F ++ + P +V+ A L E++E Sbjct: 10 DVVAFAGAAGRPDLTVTAVDGARPFLLSALAGQA--PVLVVTATGREADDLTSELRETLG 67 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 +AV F PS +T + S RL + + D Sbjct: 68 ADAVTQF-------------PSWETLPHERLSPGADTVGRRLQVLRRLAWPDDAQYGAPL 114 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVA+V ++ P L + L G D ++ L EL Y R D +RG F V Sbjct: 115 RAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAV 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPR 253 RG ++DIFP +D + +RVE + +E+ L F + + +YP + Sbjct: 175 RGGILDIFPTTTD-LPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVYPCRELLLTA 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +A L E LE + + G+E L Sbjct: 234 DVRDRAAT------------------LKAEHESDAALAEMLEKLAQGIPVEGMEALIPAL 275 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR---GDRARKETLVEYGFRLPS 370 L D LP V+ + + + R T G P Sbjct: 276 VPGELQL----LTDVLPDGTHTVLLDPEKIRTRAADLARTGQEFLEASWTAAALGSSAPL 331 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 L + L VSA + + G D + R Sbjct: 332 DPSGIDLGASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTV-HAEHAPAPRGS 390 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + L + +R AA ++ + + E L + L E Sbjct: 391 EAEAEKLFATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASEL----------EA 440 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R G VL G L+ GL +P LV + + D G R A +G Sbjct: 441 GEGPRPGTVGVLRGS--LQTGLTVPSQQLVLLAEPDLTG------------NRVAGVGDG 486 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + P+ + + ++EHGI K V+++ A+ + Sbjct: 487 RRL-------PAKRRNQVDPLALTAGDLVVHDEHGIG------KFVEMIERTVAGARREY 533 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + + + ++L Q + G M A QIRD + + R Sbjct: 534 LVIEYAPSKRGQPGDKLFVPMESLDQLSRYVGGEM-----------AKQIRDMVPEAR 580 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 22/183 (12%) Query: 461 DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 ++ + + + R + H + ++ EFDVLV ++ GLD+ + + Sbjct: 567 EMAKQIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTL 626 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + A+ G + L Q GR R+ Y + PS K + ET R Sbjct: 627 IVERAENLGLSQ----LHQLRGRVGRSRERG---YAYFLYPSE-KPLTETAYDRLSTIAQ 678 Query: 579 NEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 N E G G+ + D+ G N+ + G V D+ + + + + Sbjct: 679 NNELG---AGMAVAMKDLEIRGAGNVLGAEQSG--------HVAGVGFDLYVRLVGEAVE 727 Query: 638 ELE 640 Sbjct: 728 AFR 730 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 96/620 (15%), Positives = 205/620 (33%), Gaps = 68/620 (10%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 +++ N+ A +L + PE V+YF T + A+ Sbjct: 45 KQNNVLIIIEENENKAQRLVDNLAPILPEEKVQYFAVDS-------------TLATQRAT 91 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAIL 173 + R+ A +L +VV + + Y L D Y++ + VG D + + Sbjct: 92 ASPDELAQRIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELN 151 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 + L Y + + G F VRG+++DI+P +R+E F +EV+ + FD T + Sbjct: 152 KWLVASGYRKEALVAKPGEFAVRGDILDIYPL-DQVSPIRIEFFGDEVDTIKSFDVNTQK 210 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + P + + + +A IK+E+ E Q Sbjct: 211 SILEKEEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNF 257 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE+++EL + +NY+ + P +L YLP +GL+V ++ + Sbjct: 258 LEVLDELAQGNLPDNYAFLVDYLLPKSC--SLLSYLPENGLVVFNDWQAIKKADSEITDQ 315 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + ++ G L S L ++ + G +L Sbjct: 316 NADFISDEIKAGLMLNSQKLRMNLTTVLRQSKHHRLYLSLFQKGMGQLRFDSLFNW---- 371 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 P E +Q+ + SE+ + V++ +R ++ + L + + Sbjct: 372 -------PNREPEQFFSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNL 424 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + +L + + VG +G +P++ LV + + + ++ Sbjct: 425 PIV-----------TKENLVEHKLQITVG--QFSQGFSLPQIQLVYLTERELFNTQVHKK 471 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I + A R + K ++ + G + Sbjct: 472 RKILNLENAQR-----------LRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDY 520 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNL 650 + I G + A + V + + + ++ + A +L Sbjct: 521 ITITYQGHDQLFVPADQLSLVQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDL 580 Query: 651 EFEEAAQIRDQLHQLRELFI 670 AA+ ++ +++ I Sbjct: 581 IKLYAARESEKGFAFQKIMI 600 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 191/643 (29%), Gaps = 88/643 (13%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIAN--VIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPE 83 L G GS IA Q P + V+ N A +L E++ F P+ Sbjct: 73 ALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPD 132 Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASV 142 V +P +T S ++ + RL+ + E R D+++V + Sbjct: 133 ARVRV-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT 179 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 +A+Y + T G +D+ + +L Y Q + G + VRG +ID+ Sbjct: 180 TALYRMPPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL 239 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + R++LFD++V+ + FDP T + + + + P + Sbjct: 240 FPMGS-PLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR 298 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E + + +GIE Y + Sbjct: 299 WRETFEG-----------------DPSRAPIYKDIGNGVPSAGIEYYLPLF-----FDET 336 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 TLF YLP + LV G R + + S RP+ + Sbjct: 337 ATLFHYLPENAQLVFT----------GDLDAAIKRFTADTKQRYAFLSHDRERPILEPQR 386 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 L+ Y+ A P V G P+ + L + Sbjct: 387 LFLSDDDFYLLAKPFARI--------VLPAQPSGGWAAPLPNLALDRHADAPLAAFAAYL 438 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N RVL T + E + + EH R +E LG Sbjct: 439 ETTNNRVLFTVESAGRRETIAQLFAEHHLRPA---GSDSFAAWLETDERFALGVAP---- 491 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L G +P + + + G L + + ++ Sbjct: 492 ---LASGFAVPGEGYAIVTETELYGALGRRAGRRRQ-----------------EQASNVD 531 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + + + +HGI + + + A P+ + Sbjct: 532 AMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHV 591 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +H L + A+ A QIRD +L Sbjct: 592 ISRYSGADPDSAPLHALGSGQWERAKRRA---AQQIRDTAAEL 631 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 98/294 (33%), Gaps = 31/294 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L + + D V T + V + + ++ E + + Sbjct: 813 DVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRG 872 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V E+ LEE R + H + E ++RD +VL+ Sbjct: 873 GQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTT 932 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + ADK G + L Q GR R+ + Y + A Sbjct: 933 IIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDPQ-A 984 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPDNV 623 + + +RR + + EE G G + D+ G K G E + Sbjct: 985 LTKQAQRRLEAIQQMEELG---SGFYLAMHDLEIRGTGEVLGDKQSG--------EIHEI 1033 Query: 624 PMDMSPKALQQKIHELE-GLMMQHAQNLE-------FEEAAQIRDQLHQLRELF 669 + + L + L+ G L A D ++E Sbjct: 1034 GFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERL 1087 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 106/649 (16%), Positives = 222/649 (34%), Gaps = 72/649 (11%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 ++ G Q L+ + G ++ ++A +I + ++++ + A L E+ + V Sbjct: 11 SVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDV 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P +T S ++ + RL + V+ ++ + Sbjct: 71 NL-----------CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLM 119 Query: 147 GLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 120 VRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPT 179 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+ELFD+E+E + FD T + + + P + T I + + Sbjct: 180 GCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRR 238 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 K + ++++ +GIENY + +L Sbjct: 239 RFEVISKE----------------AESVYQLVSRNLMPAGIENYLPLF-----FDDTASL 277 Query: 326 FDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 FDYLP + L+ D + ++ R+ + + F F+ Sbjct: 278 FDYLPENTQLITLGDIDKACANHLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFK 337 Query: 384 ALAPQTIYVSATPGNYELEK--SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ TPG+ +L + + DV + + P+ ++ ++ L ++ Sbjct: 338 PYKRSQFFIH-TPGDAQLGEDGTKKDVAKKDSALQANVAPLPDINA-NHKLKQPLESLQA 395 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV-- 499 A + +L + ++ E L L + G + E + + V Sbjct: 396 FAQDGKPLLFSAESEGRREALLALLSKIGIKPTLF------KHLDEFLDASVPLKGPVHG 449 Query: 500 LVGINLLREG---LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 L+ ++ L G LD P+ L I + + G I + R K + Sbjct: 450 LI-VSPLSRGCTLLDSPKGELSLICETELFG---------HKIAQQRRRDKQKQVS---- 495 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 I + + Q + EHG+ + + + + + A G P Sbjct: 496 ----SDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVP 551 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + ++++L A+ E+ IRD +L Sbjct: 552 VSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEK---IRDVAAEL 597 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 21/275 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 760 EHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV 819 Query: 429 AT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 + + + +V E + L + R + H + + Sbjct: 820 REYHQATIREALLREILRGGQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDL 879 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 +++ D F+VLV ++ G+D+P + + I ADK G + L Q GR R+ Sbjct: 880 EKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQ----LHQLRGRVGRS 935 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y ITP + K I R+R + EE G G D+ G Sbjct: 936 HHQ---AYAYMITPPI-KLISTDARKRLEAIDALEELG---AGFMLATQDLEIRGAGELL 988 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + L+ + L+ Sbjct: 989 GDEQSG-------HISKIGFSLYMEMLESAVSALK 1016 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 27/250 (10%) Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERV 473 +D ++ + + + ++V+V T ++ E+ + + + Sbjct: 650 SMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEI 709 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL---REGLDMPEVSLVAILDADKEGFLR 530 + E+ ++++ L G+ D+++G + L ++ L+ I + + G + Sbjct: 710 EVMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFV--DLGLLIIDEEHRFGVRQ 767 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 E+ +A R L I ++ A+ R + + Sbjct: 768 KEKI------KALRANVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPAKRLAVKTFV 819 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQ 645 ++ + RG + + ++ + L+ + E G M + Sbjct: 820 REYHQATIREA---LLREILRGGQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRE 876 Query: 646 HAQNLEFEEA 655 ++LE A Sbjct: 877 --RDLEKVMA 884 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 101/643 (15%), Positives = 211/643 (32%), Gaps = 49/643 (7%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 ++ + L G +T G+ G+ + +A + L+ P + +A ++ A L ++ F Sbjct: 31 FAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFF 89 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 +P+ + + S + RL A + + R +V Sbjct: 90 LGGQGSLLAPR-------VLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALV 142 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 SV A++ P + + + VG D+ ++ RRL + Y + GTF VRG+ Sbjct: 143 LSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGD 202 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F D +R+E F + +E + FDP + + V + + P + E + Sbjct: 203 LLDVFSPLYDK-PVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPR 261 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A + ++ + L+ + E G+E G Sbjct: 262 AESAARAVADRINLPTIK-------------LREQLDALREGLPGFGMEGLLPGFFEDGL 308 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 L D+ P ++ +D+ + + + R E L L Sbjct: 309 STVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPLEHFLS 367 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDDLLS 437 E+ + G L ++ V T L + I+ + L+ Sbjct: 368 REDVNQRMQS--FRVLEGGGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGALSPLVE 425 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V T A+ L L + V+ T + + L Sbjct: 426 RLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVKV-----HTEPLEDAV-ALYEPSI 479 Query: 498 DVLVGINLLREGL-DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 + + G D P L + D + G + + + ++ ++ +GD Sbjct: 480 RAHLFTGEVSHGFVDGPG-GLAVLADEEIFG------ARARRRPKRSKKLDAFGSGFGDL 532 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV--VDILALGQNIAKTKAKGRGKS 614 + R E +G+ L + D + L + K G Sbjct: 533 KEGDLIVHTDFGIG-RYAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGD 591 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 V+ D + + ++ ++ +++ A L AA+ Sbjct: 592 PTQVQLD----KLGTTSWEKTKKRVKEQLLKMAAELLQIAAAR 630 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 102/294 (34%), Gaps = 24/294 (8%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQ 441 + ++ATP L S V D + T D V D ++ E I + Sbjct: 800 WRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIER 859 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDV 499 A +V + L +V H + + +++ ++ V Sbjct: 860 EVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQV 919 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ +++ G+D+ + + + AD+ G + L Q GR R+ Y + P Sbjct: 920 LLCTSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRSKER---AYAYLLVP 972 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 S +A+ + +RR + + E G G + D+ G + Sbjct: 973 SR-RAVTKDAQRRLEVLQNFTELG---AGFSIASHDLEIRGAGNLLGDKQSG-------A 1021 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQH--AQNLEFEEAAQIR-DQLHQLRELFI 670 + DM + L++ + E++G + ++ A I D + + + + Sbjct: 1022 IAEIGFDMYAQLLEEAVAEMQGQPPKVQIEPDVTLPMPALIPDDYVSDVHQRLV 1075 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 18/235 (7%) Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 R + G+P D L Q+ M + Sbjct: 580 RMRLIQKFSGGDPTQVQLDKL--GTTSWEKTKKRVKEQLLKMAAELLQIAAARKAHPGHA 637 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 SA D +FE + + + D + +D ++ Sbjct: 638 FSAPDRYFAQFEAD---------FEFEETPDQAKAIEDVLADM--QKPEPMDRLVCGDVG 686 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAED----LTEYLEEHGERVRYLHSDIDTVE 484 + + + + A ++V V T +A+ + ++ V + E Sbjct: 687 YGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPE 746 Query: 485 RMEIIRDLRLGEFDVLVGINLLREG-LDMPEVSLVAILDADKEGFLRSERSLIQT 538 EI++ + G+ D+L+G + L G + E+ L+ + + + G + E Sbjct: 747 VREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKESLKKWR 801 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 89/663 (13%), Positives = 212/663 (31%), Gaps = 66/663 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L+D + + G T + L + +++A N+ A Sbjct: 4 LVDIINNLRPFEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 + Y ++ P P D F+ S + + RL + Sbjct: 64 RKYYEDLFNISP--------------LRVLLYPEKDIFLYDRDSKSRDNLKTRLGTISKI 109 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V ++ A+ D++LK L L ID +++ +L ++ Y R Q Sbjct: 110 LTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEG 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI + R+ELFD E++ + F+ + + + I I+P Sbjct: 170 MGQFSIRGNIIDIATFSDN---YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + A ++I+ E+ + RL ++ + E Y + Sbjct: 227 LISEDDRLNAAKKIENEI------NKTKLSGERKDRLFEKFSLYKNRLVEDEYIQNPDLI 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 FL+ + D++ D + +++E + + + + ++ +G LP Sbjct: 281 IPFLNEDKL----SGIIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEALP 336 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 S + + L + + E +V+ ++ + Sbjct: 337 SHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKS---------ITNYR 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ ++ + +V++ + + A+ L +L E V + + + Sbjct: 388 SKIKLFREDLDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF---------KEDRN 438 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + + +V + G + +V I A+ G + ++ Sbjct: 439 TEFAN---NFVVTTGSVNAGCEFALSKIVIINYAEIYGTYKEKKK--------------P 481 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + KY + G+ + V I G + + Sbjct: 482 KRKKEKILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIE 541 Query: 610 GRG---KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 K + ++ + + + + A +L AA+ + Sbjct: 542 SLDLIYKYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFS 601 Query: 667 ELF 669 + Sbjct: 602 KDS 604 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 141/434 (32%), Gaps = 44/434 (10%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P + + ++ A + Q +E + Sbjct: 637 HPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTILAQQHYNIMVERFKDFPVE 696 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G LS + + L A + +V +H + + + Sbjct: 697 VG------ILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKDVVFKDLGLLIIDEEQR 750 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + T+ +SATP L+ S + D V + Sbjct: 751 FGVRHKEKLKMLKENID--------TLTLSATPIPRTLQMSMIGIRDMSVIEEPPEERFP 802 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 V ++ E I + +V E + L E V ++ + + Sbjct: 803 VKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEVSFVMANGQM 862 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + + + G+ DVL+ ++ G+D+ + + I D+++ G + L Q G Sbjct: 863 NEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQ----LYQLRG 918 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y T +I E ++R K K E G G + D+ G Sbjct: 919 RIGRSSR---VAYAYF-TYEKDVSISEIAQKRLKTIKEFTEFG---SGFKIALRDLEIRG 971 Query: 601 QN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLE---F 652 I +K G DN+ D+ K L Q +++L+G ++ +L+ + Sbjct: 972 SGSILGSKQHG--------HIDNIGYDLYMKYLTQAVNKLKGIETRETIETVIDLKIDSY 1023 Query: 653 EEAAQIRDQLHQLR 666 I D+ +L Sbjct: 1024 IPKTYIEDERLRLE 1037 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 202/645 (31%), Gaps = 71/645 (11%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRP---TMVLAPNKTLAAQLYGEMKEFFPENAV 86 T G+ GS IA + ++ A +L E+ F P+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS-AI 145 +P + S ++ + RL+ +L +V+ V+ A+ Sbjct: 75 RL-------------LPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTAL 121 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 LG P+ G +++ A+ +L + Y + G + +RG + D+FP Sbjct: 122 QRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ R++LF +E+E++ F+P T + + + + P + +E Sbjct: 182 GS-NLPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + +GIE+Y E +L Sbjct: 241 VFEGDPSRCSIYKDA-----------------SLGIPSAGIESYLPLF-----FEENSSL 278 Query: 326 FDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 FDYLP + + I G ++ +R E L R L +EF + Sbjct: 279 FDYLPRSGDPVWLVSIGDVEETIKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFFS 338 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 Y + N +EK+ V + DPI +R V A+ Sbjct: 339 T--SKPYARLSLENEAVEKNEFFAVPDISVHRRDADPISRLRNVV-------------AS 383 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD---IDTVERMEIIRDLRLGEFDVLV 501 N RVL+ + + E + + +E V + E + I + E + Sbjct: 384 ENVRVLICSDSAGRKESIRQLFDESN-SVASVDGKSLYSLKPEGFDSIAEFIKSESLFGL 442 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 L G P +L+ I +A+ +R G+A N + +L+ D + Sbjct: 443 VTAPLFNGFSWPSENLIVITEAELFTTTTRQR----RKGKANENAD-SDMLFKDLSELKI 497 Query: 562 AKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + E R + + ++ + + GQ + Sbjct: 498 GDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLYVPVQQLQMVTRYAG 557 Query: 620 PDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ-IRD 660 D + + + + A L AA+ IR Sbjct: 558 SDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARAIRK 602 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 23/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L + + + + T + V + DD++ E + + Sbjct: 773 DILTLTATPIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRG 832 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V ++ L+E R H + E ++R+ ++L+ Sbjct: 833 GQVYFLHNEVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTT 892 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + ADK G + L Q GR R+ + Y + P+ ++A Sbjct: 893 IIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHR---AYAYLLVPN-SEA 944 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPDNV 623 + + + R + EE G G + D+ G K G E + Sbjct: 945 LSKQAQLRLNAIQAMEELG---SGFYLAMHDLEIRGAGEVLGDKQSG--------EIHEI 993 Query: 624 PMDMSPKALQQKIHELE 640 + + L + + L Sbjct: 994 GFQLYTEMLNRAVKSLR 1010 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 198/660 (30%), Gaps = 91/660 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V+ + + IA + P +++ + A Q+ +++ + P Sbjct: 25 VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDLQTLL----------AHCSGLPV 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 P +T S + +I RL+ + +VV V + P Y + Sbjct: 75 IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 VG + A +RL Y Q G F VRG ++D++P +D + LR+EL D Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLD 193 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 EE++ + FDP + + ++ + + P + + + ++E Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERFD---------- 243 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG--RGPGEPPPTLFDYLPADGLLV 336 L R + + SGIE Y RG TLFDYL AD L++ Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + R E R + + + Sbjct: 297 --TAPGVSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEV-W 353 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 +V+D+ P D + L + + A RVL+ + Sbjct: 354 SAEHAHIDKAEVLDEQPLPVATKDVSVGQ--------ALRTFLADYA---GRVLIAATSP 402 Query: 457 RMAEDLTEYLEEHGERVRYLH------------SDIDTVERMEII-----RDLRLGEFDV 499 E L E L + L SD+ R D F V Sbjct: 403 GRREVLLELLATADLQPEVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHV 462 Query: 500 L-----------VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + + L +G + + + + + + +GR Sbjct: 463 IASQGGSLPTFAITVAPLEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGR------- 515 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + E +E+HG+ + G+ + A Sbjct: 516 -----------EPEAIIRDLGELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEFVEIEYA 564 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 KG P+ + + +H L G A+ E+ + +L +++ Sbjct: 565 KGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQAR 624 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 92/276 (33%), Gaps = 21/276 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T L+ + + Sbjct: 781 EQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFI 840 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVER 485 + LL E ++ A ++ + L + R H + E Sbjct: 841 TPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPEREL 900 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D + F+VL+ ++ G+D+P + + I AD+ G + L Q GR R+ Sbjct: 901 ERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ----LHQLRGRVGRS 956 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + P + E+R E +E G D+ G Sbjct: 957 HHR---AYAYLVVPDRRSMTADAEKRLEAIASMDE----LGAGFTLATHDLEIRGAGELL 1009 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + V + + L++ + ++ Sbjct: 1010 GEDQSG-------QMAEVGFSLYTELLERAVRSIKQ 1038 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 106/634 (16%), Positives = 209/634 (32%), Gaps = 82/634 (12%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 H+ L V I+ + Q T+V+ P+ A +L + E ++ Sbjct: 17 HKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQD--------- 67 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPD 152 P +T S ++ I RLSA + + + + +S + P Sbjct: 68 -----VCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQ 122 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 +L + G + + +L Y +Q + G + VRG ++D+FP S + Sbjct: 123 YLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-VPF 181 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ FD+E++ + FD T + + I + P + T + I + +E Sbjct: 182 RLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGE--- 238 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + + +++ SGIE + TLFDYLP Sbjct: 239 -------------IRRDPEHIYQQISKGTLISGIEYWQPLF-----FAEMATLFDYLPEQ 280 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L V E++ T Q Y+ + R E R + + L +E + Sbjct: 281 TLFVDMENNQT--QGERFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRI 338 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + V V + + + EV + Q + L + VL + Sbjct: 339 TFK---------AEKVRSSVRQKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFS 389 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ E L + L + + + + + + +F +LV L +G + Sbjct: 390 VETEGRRETLLDLLSPLKLKPKQI----------QSLEQIENEKFSLLVSS--LEQGFII 437 Query: 513 P-EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + + I +A+ G IQ R R T + + Sbjct: 438 EQSLPVAIIGEANLLG------KRIQQRSRDKR------------KTINPDTLVRNLAEL 479 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + Q + +HG+ G + + + A P+ + + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSD 539 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +H+L ++ + A +IRD +L Sbjct: 540 ESAPLHKLGNEAWAKSRQ---KAAEKIRDVAAEL 570 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 28/288 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 + ++ATP L + + D + T + V D ++ E I + Sbjct: 748 RANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILRE 807 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V E+ E L R + H + E ++ D ++VL Sbjct: 808 ILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVL 867 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I AD G + L Q GR R+ + Y +TP Sbjct: 868 VCSTIIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPP 920 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + ERR E G D+ G + + Sbjct: 921 PKMMTKDAERR----LDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG-------QI 969 Query: 621 DNVPMDMSPKALQQKIHELE-------GLMMQHAQNLEFEEAAQIRDQ 661 +++ + + L + L+ + Q ++E A + D Sbjct: 970 ESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDD 1017 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 25/271 (9%) Query: 392 VSATPG---NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 SAT Y+ E + V+ + +P +D ++ + + + +++ Sbjct: 595 FSATFPFEETYDQEMAINAVISDMCQP-KAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQ 653 Query: 449 VLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 V V T ++ E+ + V L E+ +I+ +L G+ D+L+G + Sbjct: 654 VAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTH 713 Query: 505 -LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 L++ + ++ L+ I + + G + + Q R L I ++ Sbjct: 714 KLIQSDVKFNDLGLLIIDEEHRFGVGQK-EKIKQL-----RANIDILTLTATPIPRTLNM 767 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 A+ R ++ + ++ D++ + + RG + D Sbjct: 768 AMNGI--RDLSIISTPPARRLSIKTFVRQNDDLVVREAIL---REILRGGQVYYLHNDVA 822 Query: 624 PMDMSPKALQQKIHELE-----GLMMQHAQN 649 ++ + + L + E G M + Sbjct: 823 SIENTAEKLTALVPEARVIVGHGQMRERELE 853 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 112/662 (16%), Positives = 230/662 (34%), Gaps = 92/662 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A ++L +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH--IEQMRLSA 126 A +L ++ + E ++P + A + + +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEE--------------PGFLPDPSLLPYQRAVSDRNSSLEKMRLAG 112 Query: 127 TKA--MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + ++V +V A+ P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 113 ILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQ 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI Sbjct: 173 ESIVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++++ R +LL +N E R D+ +NE Sbjct: 232 SPASELF-------HLGQLTRKDINNRLDILLTDNLNPEFSR---TLSADINHLNEGLKP 281 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 E ++ ++ DYLP+D L+V+DE + + + + Sbjct: 282 EYPEFFAPLF-------NTSSILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLS 334 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G E L + + A+ G D + Sbjct: 335 HGELPSVYPRPYFNWAEISAMLKTKKRLIMASFGRESESLKLDF---------ASPDNYV 385 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L ++ + RV++ + A L E L+E Sbjct: 386 ------GRLSGLYEKLPELKGHTGRVVIVSH---QAARLAELLKERSILAVV-------- 428 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + +++ ++ G +L G + + +L + DA+ GF++ R + A Sbjct: 429 -QTDVLTPPPPASLSLVQG--ILGSGWSLSD-NLHILTDAELFGFVKQRRLPSKRPS--A 482 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R + + + +HG+ + + + Sbjct: 483 RKG--------------------VVLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYL 522 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A G P + D V + +H L Q A+ E A + +L Sbjct: 523 ILQYAGGDKLYVPTDQMDRVNRFIGSGDEPPSLHRLGTQEWQRAKEKASESAEETARELL 582 Query: 664 QL 665 + Sbjct: 583 DI 584 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 120/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q E + + Sbjct: 634 PMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLAT--FPV 691 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + + + + +H + + + Sbjct: 692 KVEVLSRF----RSQSEQKEVVENMEKGEVDICIGTHRLLQADIKFKDLGLVIIDEEQRF 747 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + +SATP L S V D V T + + Sbjct: 748 GVAHKEFFKKL--------RAQVDVLTLSATPIPRTLHMSMVGVRDMSVIETPPGERLPI 799 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA + L+ E I + N +V + L E +++ R H + Sbjct: 800 KTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIGHGQMA 859 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D E DVLV ++ G+D+P + + I AD+ G + L Q GR Sbjct: 860 EDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQ----LYQLRGR 915 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + K + +R K E G G + D+ G Sbjct: 916 VGRSSQ---LAYAYFL-YDKEKHLSGDAEKRLKTIYEAAELG---AGYGIAMKDLEIRGA 968 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + K G ++V ++ + L + + L+ Sbjct: 969 GTLLGVKQSGY--------INSVGFNLYTQMLSEAVAGLK 1000 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 111/658 (16%), Positives = 216/658 (32%), Gaps = 82/658 (12%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 R + L + L G + +A +A L+RP +++ P A + F Sbjct: 24 REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE-HIEQMRLSATKAMLE--RRDVVV 138 + V +PS +K S+ + R+ A +V V Sbjct: 84 GNDLHRQDVPADR---RVWCLPSRS--GQKSQSLGKMATMARRMETLHAFRASIGSNVFV 138 Query: 139 VASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 ++V+ + L P++ L + G ++ + L E Y R + G F +RG Sbjct: 139 TSAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGG 198 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 V+D++ LR+E F +E+E + LF P T + + + + P + + + Sbjct: 199 VLDVYAPLY-RWPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARER 257 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A E + ++ E + L+ + E E+ Sbjct: 258 AREAVYADVR-------------EGRLTPAAGNVWLDKLQEGHQFGAFESIMSVFY---- 300 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 E T+++YL ++V ++ + ++ + R PS L P Sbjct: 301 -EKTVTVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIP 359 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ---VD 433 + Q I S + G +G + VR A + ++ Sbjct: 360 ERLIADGESFQQLIVNSLSGGTEPRAVFDMG-------TSGHEQLALSVRAHAEKERLLE 412 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + ++ + K A L+E LE HG + Sbjct: 413 PLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHGTDTVL------------TLLPFG 460 Query: 494 LGEFD---VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 ++ V V + L G P L + + + G +T R+ ++V+G Sbjct: 461 AESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGK--------RTRRRSGKSVSG-- 510 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG---QNIAKTK 607 + + + +HGI G+ K++V + G + Sbjct: 511 ------------LFLSSFQDLHIGDFVVHVDHGI---GVYKELVHLAVRGIESDFLLLEY 555 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + V + + Q KI +L G + A+ E A ++ ++L L Sbjct: 556 QDGDRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSL 613 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/408 (14%), Positives = 117/408 (28%), Gaps = 37/408 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q E G+ Sbjct: 663 PMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQSFTERFE--GFPV 720 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + L + VV +H + + Sbjct: 721 VVETLSRF----KTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLVIDE---- 772 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 + + + ++ + ++ATP L + + D T D I Sbjct: 773 ----EHRFGVKHKERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAI 828 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 E + + + + +V + + H + Sbjct: 829 ETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQSIYQTANAIGRLIPEAKIAVAHGQMK 888 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D + DVLV ++ GLD+P + + I ADK G + + Q GR Sbjct: 889 ERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQ----IYQLRGR 944 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + P I ++R + E G G + D+ G Sbjct: 945 VGRSSEQ---AFAYLLIPGEH-LISRDAQKRLRALLDFSELG---AGFKIALNDLQIRGG 997 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 I + G V ++ + L++ I E++G + Sbjct: 998 GTILGSSQSG--------HIAAVGYELYLELLEKTIKEMKGEERETES 1037 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 116/675 (17%), Positives = 204/675 (30%), Gaps = 105/675 (15%) Query: 31 GLAHQTLLGVTGSGKTFTIANVIAD---LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 TL GS +A + + T ++ + T A +L EM F P+ Sbjct: 8 SGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDLRYA 67 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-----DVVVVASV 142 F P +T S ++ + RL+ + +R DVV+V + Sbjct: 68 LF-------------PDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPAT 114 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 +A+Y L P V +D+ + +L Y+ Q G + VRG +ID+ Sbjct: 115 TALYRLAPPSFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDL 174 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + RV+LFD+E++ + FDP + + + +P + P + + + + Sbjct: 175 FPMGSL-VPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKR 233 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E L + M SGIE Y + Sbjct: 234 WRELLDGDPTKSR-----------------IYKDMGNGVATSGIEYYLPLF-----FDET 271 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 T+FDYL +D +V+ Q DR R LP + Sbjct: 272 ATVFDYLGSDATVVLHGDLEPAFQRFWQDTKDRYRLVRDAPDRPALPPESLFLGAEQFYA 331 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVV--------------DQVVRPTG----------L 418 A + + A + G + D + P G Sbjct: 332 RANGYAQLALKAGSPHPNPLPGGEGIKGDLLPLQGGEESKGDLLPLPLGEGRGEGSPYTE 391 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 D + + V D L RVLV + E L ++L +S Sbjct: 392 FDSLPAMAVVRGAEDPLARFKGHVRNTAHRVLVLAESDGRRESLLDFLRASNVSPPAFNS 451 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++D + + + + L G E + I + + + R Sbjct: 452 ----------LQDFQTSDEKLGIATAALNTGFSWLEEGIDFITETELFAAGVTTRR---- 497 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 RN + + + I + + HGI + Sbjct: 498 -----RNKKQEQVS-------DVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDLGQD 545 Query: 599 LGQN--------IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + A P+ + + A + +H L + A+ Sbjct: 546 KNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKAKR- 604 Query: 651 EFEEAAQIRDQLHQL 665 + A QIRD +L Sbjct: 605 --KAAEQIRDSAAEL 617 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 105/315 (33%), Gaps = 29/315 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + Q R + R + + Sbjct: 748 LADGSVDIVVGTHKLLSQDVKFQRLGLLIIDE--------EHRFGVRHKETMKAMRAEVD 799 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + + D V T + V ++ + ++ E + + Sbjct: 800 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLRELKRGG 859 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ E LEE R H + E +++D +++L+ + Sbjct: 860 QVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTI 919 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P + + + ADK G + L Q GR R+ + Y + P + Sbjct: 920 IETGIDVPSANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLMVPDIEGLT 972 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + +R E Q+ E G + D+ G +++ V Sbjct: 973 KQASQRLEAIQQMEE----LGSGFYLAMHDLEIRGTGEVLGESQSGN-------MLEVGF 1021 Query: 626 DMSPKALQQKIHELE 640 + + L + + L+ Sbjct: 1022 QLYNEMLSEAVASLK 1036 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 109/648 (16%), Positives = 214/648 (33%), Gaps = 86/648 (13%) Query: 22 RRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F Sbjct: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 Q + +T S ++ I RLS + + V++ Sbjct: 63 TD--------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIV 108 Query: 141 SVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+ + P +L L + G + + A+ +L Y DQ + G + RG + Sbjct: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D+FP S+ + R++ FD+E++ L +FD + + + + + P + T + I Sbjct: 169 LDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELF 227 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + ++ +R + + +++ +GIE + Sbjct: 228 RSQWRDTFEVKRDP-----------------EHIYQQVSKGTLPAGIEYWQPLFFS---- 266 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 EP P LF Y PA+ L + + AR E R + L+ Sbjct: 267 EPLPPLFSYFPANTL--LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRV 324 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 +E + V + + + ++ Q + V Q L + Sbjct: 325 DELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA----------VQAQQKAPLDAL 374 Query: 440 RQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 R+ + V+ + ++ E L E L + + + +R + Sbjct: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM-------- 426 Query: 499 VLVGINLLREGLDMPEV-SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 I G + V +L I ++D G R AR + Sbjct: 427 ----IGAAEHGF-VDTVRNLALICESDLLGE------------RVARRRQD------SRR 463 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 T + I Q + EHG+ + G+ + T A P+ Sbjct: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +H+L G A+ + A ++RD +L Sbjct: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQ---KAAEKVRDVAAEL 568 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 21/275 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 ++ E I + +V + E L E R H + E Sbjct: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D F+VLV ++ G+D+P + + I AD G + L Q GR R+ Sbjct: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRS 906 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y +TP KA+ ++R + E+ G G D+ G Sbjct: 907 HHQ---AYAWLLTPHP-KAMTTDAQKRLEAIASLEDLG---AGFALATHDLEIRGAGELL 959 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + + + L+ + L+ Sbjct: 960 GEEQSGS-------METIGFSLYMELLENAVDALK 987 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 82/241 (34%), Gaps = 21/241 (8%) Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVR 474 +D ++ + + + +++V V T ++ ++ + R+ Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 + E+ +I+ ++ G+ D+L+G + LL+ + ++ L+ + + + G ER Sbjct: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 +A R L I ++ A+ R + + ++ Sbjct: 742 I------KAMRANVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREY 793 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQHAQ 648 ++ + + RG + D + + + L + + E G M + Sbjct: 794 DSMVVREAIL---REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 Query: 649 N 649 Sbjct: 851 E 851 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 242 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 124/687 (18%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 + + GS +A A P +++A N A +L E+ F P+ V Sbjct: 41 SSKHSRPRYSNLQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVHL 99 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------------LE 132 +P +T S ++ + RL+ + Sbjct: 100 -------------LPDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPAS 146 Query: 133 RR-------------DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 R DV+VV +A+Y L L G +D A +++ Sbjct: 147 GRGSERENQSSTSACDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLA 206 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y Q G + VRG +ID+F S + R++LFD+E+E ++ FD T + + +P Sbjct: 207 GYNHVQQVLTPGEYCVRGGIIDLFAMGSV-LPYRIDLFDDEIETIATFDVDTQRTLYPVP 265 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + ++ + +++ Sbjct: 266 EIRLLPAREFPLDEKGQATFRQNFRDRFEGDPSKSR-----------------IYKDVSK 308 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 +GIE Y + TLFDYLP L + H + + + D A + Sbjct: 309 GIAPAGIEYYLPLF-----FDQTATLFDYLPKIATLCL---HHNVDEAITSFGKDAASRY 360 Query: 360 TLVEYGFRLP------SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV----- 408 L+ + P LD E I SA L + G++ Sbjct: 361 NLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLPEGEGNLSSLSP 420 Query: 409 ----------VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + T + PI R +R A RVL+ + Sbjct: 421 GEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYA---GRVLLLAESLGR 477 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 E ++ YL+E+G E G+ ++G+ ++ G +P+ L Sbjct: 478 REIMSGYLKEYGLTPAVC----------EDYASFLAGQDKFMLGVGPVQIGFSLPDEQLA 527 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + + Q RA R ++ + + + Sbjct: 528 IVTETELYA--------AQPRSRANRAARKS----------NVEGMLRDLSELKPGDPVV 569 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 +E+HGI + + + A P+ + + A +H+ Sbjct: 570 HEQHGIARYRGLVNLDLGEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLHK 629 Query: 639 LEGLMMQHAQNLEFEEAAQIRDQLHQL 665 L A+ + Q+RD +L Sbjct: 630 LGSGAWDKAKRRAMQ---QVRDTAAEL 653 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 21/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAIN 446 + ++ATP L S + D V T + V+ + + + Sbjct: 835 DVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREAVLRELKRG 894 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V ++ E LE R H + + ++RD F+VL+ Sbjct: 895 GQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCST 954 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + AD+ G + L Q GR R+ + Y + SM Sbjct: 955 IIETGIDVPTANTIIMNRADRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVDSMDG- 1006 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++R + + E+ G G + D+ G +++ E + Sbjct: 1007 LTAQAKKRLEAIQAMEQLG---SGFFLAMHDLEIRGAGEVLGESQSG-------EMQEIG 1056 Query: 625 MDMSPKALQQKIHELEG 641 + L I L+ Sbjct: 1057 FSLYNDMLAAAIASLKQ 1073 Score = 43.3 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGER 472 +D +I + + L A+ ++V V T ++ ++ + + R Sbjct: 705 KPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFADWPIR 764 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRS 531 + L E + ++DL G+ D+++G + L+++ + + LV + + + G + Sbjct: 765 IAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEEHRFGVQQK 824 Query: 532 ER 533 E+ Sbjct: 825 EK 826 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 111/677 (16%), Positives = 205/677 (30%), Gaps = 82/677 (12%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++L + TL+ S + + + P +V+ Sbjct: 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATG 69 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A L E++ F + A +PS +T + S RL A Sbjct: 70 READDLAAELRGVFGDA--------------VALLPSWETLPHERLSPGVDTVGTRLMAL 115 Query: 128 KAMLERRD-------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + + D VVV SV ++ P L + L LTVG ++ RL EL Sbjct: 116 RRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELA 175 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP- 239 Y R D +RG F VRG ++DIF A + + +RVE + +E+ + +F + + I Sbjct: 176 YTRVDMVGRRGEFAVRGGILDIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDI 234 Query: 240 -RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + + +A + L E +T L + Sbjct: 235 HTLVAFACRELLLSEDVRARAAQ-------------LAARHPAAESTVTGSASDMLAKLA 281 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY---RGDR 355 E G+E L G L D LP ++V + + + R Sbjct: 282 EGIAVDGMEAVLPVLWSDGHAL----LTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFL 337 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 ++ G A + Q +A G+ + + D+ Sbjct: 338 EASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHP--WWTLSQLSDESAIE 395 Query: 416 TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + R +D++ + +R A + A + E L E Sbjct: 396 LDVRAAP-SARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGM 454 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L D + G VL G LR+G+ +P +LV I + D G S Sbjct: 455 L--DPGQ--------APKPGVVGVLQG--PLRDGVIIPGANLVVITETDLTGSRVSAAE- 501 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G+ + + P A + ++ E T G ++ + Sbjct: 502 ----GKRLAAKRR------NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLV 551 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + P+ D + + + + L G + + Sbjct: 552 LEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ--APALSRLGGSDWANTK------- 602 Query: 656 AQIRDQLHQLRELFIAA 672 + R + ++ ++ Sbjct: 603 TKARRAVREIAGELVSL 619 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 63/425 (14%), Positives = 120/425 (28%), Gaps = 37/425 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q Q E M S Sbjct: 669 PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERM------S 722 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + LS + D L + +V +H + + + Sbjct: 723 GFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRF 782 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +SATP LE S + + T + Sbjct: 783 GVEHKEHIKSL--------RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834 Query: 425 VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V D + + +R+ + + + + E R + H + Sbjct: 835 LTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMP 894 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++ E D+LV ++ GLD+ + + + AD G + L Q GR Sbjct: 895 EDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGR 950 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + ET R N E G G+ + D+ G Sbjct: 951 VGRSRERG---YAYFLYPPQVP-LTETAYDRLATIAQNNELG---AGMAVALKDLEIRGA 1003 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 N+ + G V D+ + + + + A A + +D Sbjct: 1004 GNVLGIEQSG--------HVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKD 1055 Query: 661 QLHQL 665 L Sbjct: 1056 VRIDL 1060 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 121/668 (18%), Positives = 214/668 (32%), Gaps = 83/668 (12%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-----------TMV 62 + + A+ R E L G + TL V +A++ L + + Sbjct: 22 ALPKSAALTRAVEALRRGDSP-TLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVH 80 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + T +A G + PE V +P+ D S N I Sbjct: 81 VARDGTRSAAFAGALAFVAPEIEVLS-------------IPAWDCQPYDRVSPNPAIAAE 127 Query: 123 RLSATKAML-----ERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRL 176 R++A + E R VVV +V+A+ VG +D I+ L Sbjct: 128 RMTALSRLARTRSSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWL 187 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 + R G + VRG +ID+ P +R++ F + +E + FDP T + + Sbjct: 188 EANGFLRTGTVRDTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIG 246 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + P + E I + + A R E Sbjct: 247 QLRSLDLVPMSEVQLTTETIRRFRQGYVAAFGA-----------------ATRDDRLYEA 289 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++E +G+E++ R TLFDYL L+ + + G + Sbjct: 290 VSEGRRAAGLEHWMPLFYDRL-----DTLFDYLAGVPLVFDKDVDDAAGERLGQVQEYHD 344 Query: 357 RKETLVEYGFRLPSAL-----DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + ++ + D L E+ TP E G +VD Sbjct: 345 ARCEALKAPQPGVAPYKPLGSDALYLSPAEWAKRVEGARVARLTPF-AVPESPGRPIVDC 403 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 P P V D + +R V++ ++ + L L +HG Sbjct: 404 EAEPARNFAPERAQEGVNV-FDAAVQHVRALQGSGHHVILAAWSEGSRDRLCGVLTDHGL 462 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + + L+ G+ DV V + L G + L + + D G Sbjct: 463 P-----KPKTVTRLSDTL-ALKRGQ-DVAVAVWGLEAGFTIE--RLAVVAEGDILG---- 509 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L++ +A R IL ++P + R K +T G Sbjct: 510 -DRLVRPKRKAKR--PQDVILEVQALSPGDLVVHADHGIGRFTGLK-----TVTAAGAPH 561 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNL 650 ++I G + +R E +VP+D + A Q + +L+ +++ A L Sbjct: 562 DCLEIQYNGGLLLLPVENIELLTRYGSEEADVPLDKLGGGAWQARKAKLKRRILEMAGAL 621 Query: 651 EFEEAAQI 658 A + Sbjct: 622 IKVAAERF 629 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 102/315 (32%), Gaps = 29/315 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + G + +G L Sbjct: 752 LADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKAL--------RAEVH 803 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + +SATP L+ + V + + T +D + V L+ E + + Sbjct: 804 VLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLLVREALLRERYRGG 863 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +++ +L+ + H + + +++ G+FD+L+ + Sbjct: 864 QAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTI 923 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + + AD G + L Q GR R+ KA Y TP KA+ Sbjct: 924 VESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRS---KARAYALFTTP-EGKAL 975 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 RR K + G D+ G + V Sbjct: 976 TVQAERRLKVLQ---SLDTLGAGFQLASHDLDIRGAGNLLGDEQSG-------HIKEVGY 1025 Query: 626 DMSPKALQQKIHELE 640 ++ + L+ + L+ Sbjct: 1026 ELYQQMLEDAVAALK 1040 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 114/689 (16%), Positives = 221/689 (32%), Gaps = 81/689 (11%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLAPNKTLAA 71 + EA+ + L G + +LG G + +A +A + P + +AP+ T A Sbjct: 2 ALSALEALPVVLTALRSGRRKR-VLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQ 60 Query: 72 QLYGEMKEF--FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + ++ F E A Q VP D D S + R++A + Sbjct: 61 TVAADVAFFAGSGEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALER 120 Query: 130 MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + +++ S+ ++ + + ++ + + L+ Y R D Sbjct: 121 LRAGEPELIILSLRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVG 180 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++D++ + R+E + +E+ER+ +FDP + + + + ++P Sbjct: 181 DPGCFAIRGGIMDVWVPL-ERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRE 239 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V R + +LE +E T+ + + GI+ Sbjct: 240 TVATGSRTTANALRL---------AVLELGDRIEVPS--SATRQVIANLGAGVDFFGIDA 288 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + ++ DYLPA+ +DE + M VE + Sbjct: 289 LTPVFHDGLA-----SVADYLPANARWYLDEPEALVGLGERMADELDFEYRRAVEAKHLV 343 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV--- 425 + D + + E L + V A Y+ E++ GD + G P+ Sbjct: 344 AAPEDFFCTREQLREQLRGAAV-VGARLDLYDPEQTKGDRRGVIRVDLGRNAPLRAKLEA 402 Query: 426 ----------RPVATQVDDLLSE--------IRQRAAINERVLVTTLTKRMAEDLTEYLE 467 RPV + +L + V++ AE LT L Sbjct: 403 ARGQKGGELLRPVVDHIRELGVHADATLGGALDPSERDPWDVVLVAPNTTHAERLTAMLR 462 Query: 468 EHGERVRYL------HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +G R HS +L+ V+ G L EG L+ + Sbjct: 463 GYGLRPEGTSKQEREHSSGAGGAIELGGLELQAPRLRVIAGT--LSEGFASEGDRLLVVS 520 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 +++ G + + +A + + GD + + + Q Sbjct: 521 ESEIFGPVARREGRRRRRRKAG-VASLSQLSIGDYVVHVVHGVGRYVGLTKLAAQGVP-- 577 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G + AK P+ + +S +A K+ + G Sbjct: 578 ------------------GDFVIVEYAKKDKLYLPVHRIGEIERYVSAEAKAPKLDRMGG 619 Query: 642 LMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 Q +A +IR + QL E + Sbjct: 620 QTFQA-------KAKKIRSDVRQLAEELL 641 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 139/457 (30%), Gaps = 50/457 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + D + + P V + ++ Sbjct: 679 DAIDSVQD-DLSSQR-----------PMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAV 726 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q E M+ G+ N + R + + VV Sbjct: 727 LAPTTVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRT------LAGIKDGTVDVVV 780 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G + + + ++ATP Sbjct: 781 GTHRLLSRDVRFKELGLVIIDEEQRFGVKQKDRFKKL--------KTSVDMLTLTATPIP 832 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L S + + + T +D + + D +L E IR+ A ++ Sbjct: 833 RTLHMSLLGMREISMITTAPVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVM 892 Query: 458 MAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E+ + E R + H + + + D E DVLV ++ GLD+P Sbjct: 893 GIEEHAVRIRELVPEARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRA 952 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I AD+ G + L Q GR R+ K Y + S+ + + E RRR + Sbjct: 953 NTMFIARADQFGLAQ----LYQLRGRIGRS---KLRAYCYLMVASLER-LSEDARRRLEA 1004 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + E G G N D+ G + + + + + L + Sbjct: 1005 IQRHSELG---AGFNVASQDLEIRGAGDLLGRRQSGS-------IQAIGFEAYARILGEA 1054 Query: 636 IHELEGLM--MQHAQNLEFEEAAQIRD-QLHQLRELF 669 + EL G + + F+ A + D + + Sbjct: 1055 VAELRGDPISQETDPEVAFDVPAFLPDTYVEDVGARL 1091 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 94/628 (14%), Positives = 177/628 (28%), Gaps = 67/628 (10%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 L+ + +L ++ S + ++L N A + ++ F Sbjct: 17 SLKGQTSTWSLNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAE---- 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P P +T S ++ I RL + + +++ VS + Sbjct: 71 --------TDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLI 122 Query: 147 GLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P + K L G +D A R+L Y R Q + G F VRG +ID++P Sbjct: 123 QKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPM 182 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 183 GS-RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRS 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R + + G+E Y T Sbjct: 242 HFGD-----------------DARNSQLYRSVKDGQTVDGLEYYLSLFH-----SNIATF 279 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 FDYLP+D L + +R L + Sbjct: 280 FDYLPSDCLFFNQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSALK 339 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 A I S P + + + + P+ ++ Q + Sbjct: 340 AFHRIQFSLQPTDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQYA---------SEH 390 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N R+L + E L L +H + ++ + + + + + Sbjct: 391 NGRILYCAESTGRRETLLTILSKH----PQFKGKLPKQ--IDSWGEFKTSKAPYEIIVGP 444 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 L + + + ++ G IQ R R + + I + + I Sbjct: 445 LED--SVYTDDFCILSESQIFGQTV-----IQKRRRK-RKHSEFDNAISNLIELDLGQPI 496 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP- 624 + ++ +T QG + + I G Sbjct: 497 VHFDH---GVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASAETA 553 Query: 625 --MDMSPKALQQKIHELEGLMMQHAQNL 650 + + + + A L Sbjct: 554 PLHKLGSDKWDKAKRKAAEKVRDVAAEL 581 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 29/298 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQR 442 + ++ATP L + D+ D + T + V D++ E + Sbjct: 759 RTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQTFVQDWNPDVVKEACLRE 818 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVL 500 ++ + E + E ++ + H + E +++++ F++L Sbjct: 819 IRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQMHERELEQVMQNFYHRRFNIL 878 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I ADK G + L Q GR R+ + Y T Sbjct: 879 VCTTIIETGIDIPTANTILIHRADKFGLAQ----LHQLRGRVGRSHH---KAYAYLFTAG 931 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A + E+R K++ G D+ G + + Sbjct: 932 KALMTKDAEKRLTAIAKHDT----LGAGFMLASHDLEIRGAGELLGDGQSG-------QI 980 Query: 621 DNVPMDMSPKALQQKIHELE-GLMMQHAQNL----EFEE---AAQIRDQLHQLRELFI 670 + + L + + L+ G + L E E A D L + + Sbjct: 981 HEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLV 1038 Score = 42.1 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 40/389 (10%), Positives = 113/389 (29%), Gaps = 14/389 (3%) Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE----VIDIFPAESDDIALRV 214 L + + L + N + R E ++ P + ++ Sbjct: 366 LTIQSNSEYPLAKLNAFLDQYASEHNGRILYCAESTGRRETLLTILSKHPQFKGKLPKQI 425 Query: 215 ELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + + E + ++ + G + ++ F I ++ + + E Sbjct: 426 DSWGEFKTSKAPYEIIVGPLEDSVYTDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAIS 485 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L+E + L + E +G P T + Sbjct: 486 NLIELDLGQPIVHFDHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRY 545 Query: 333 G---LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + R + + + + + RP + + A Sbjct: 546 TGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDEEAYAR 605 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 +++ + V ++ +D +I + + + A ++V Sbjct: 606 FRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQV 665 Query: 450 LVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN- 504 V T ++ E+ + R+ L E +I+ ++ + D+++G + Sbjct: 666 AVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHK 725 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSER 533 +++ + + L+ I + + G + E+ Sbjct: 726 IIQNDMQFGNLGLIIIDEEHRFGVRQKEQ 754 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 191/640 (29%), Gaps = 67/640 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q A+ + + G + + + P +V+ P A + Sbjct: 11 QETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTAL 70 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P+S+ + I +L +L D Sbjct: 71 LELMG--------------WSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDA 116 Query: 137 V---VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +VA+ + L PD+ L G +D A+ LA+L Y R + Q G+ Sbjct: 117 LSWAIVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGS 176 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RG+++DIFP S+ + +R+E F EE+++L FDP + + + + + P Sbjct: 177 WSRRGDIVDIFPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPL- 234 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 I ++L LE E E + G G+ Sbjct: 235 ----------IADQLRETMPDGLEPLLGAEGT----------EQLLNGGTPEGMRRLMGL 274 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P +L DYLP +V+DE + + Sbjct: 275 -----AWGQPASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEAGLDEGDR 329 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D E A + + + + VDQ L + P Q Sbjct: 330 DRLWPAVLHREIEAAYALTEVF----HGFDMAELLEVDQHPNSFDLASRPVAAYP--NQF 383 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L I+ V + + A LEEH R++ + D+ +I Sbjct: 384 GKLGELIKGFQTERTAVWLVSAQPSRA---VALLEEHDCISRFVPNAGDSNAISRLIEQN 440 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 V G L GL +P + + D + G S R A + Sbjct: 441 TPVALKVR-GTAELE-GLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRT----- 493 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV--VDILALGQNIAKTKAKG 610 + P+ + R ++ + G + V +A + Sbjct: 494 ----VDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGILRVAADQLGS 549 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 G+ R E M A + + + + A +L Sbjct: 550 LGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDL 589 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/410 (16%), Positives = 129/410 (31%), Gaps = 35/410 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ A Q + E Sbjct: 642 PMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKV 701 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + N R S R ++ D L + V +H + + + + Sbjct: 702 ALLNRFRTASERK------SILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRF 755 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-LDPII 423 G + + +SATP L S V + + T L I Sbjct: 756 GVNQKEKIKVL--------RKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPI 807 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + + + + S IRQ +V E++ L E G ++ H + Sbjct: 808 KTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQMA 867 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + GE DV++ ++ GLD+P V+ + I DA + G + L Q GR Sbjct: 868 EGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQ----LYQLRGR 923 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + P ++ +T R+R + + + G G + D+ G Sbjct: 924 VGRSG---IQAHAWLFYPG-NASLSDTARQRLRAIQEFAQLG---SGYQLAMRDMEIRGV 976 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + + + D+ + LQ+ + E++G + ++ + Sbjct: 977 GNLLGVQQSG-------QMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQ 1019 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 97/617 (15%), Positives = 200/617 (32%), Gaps = 78/617 (12%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + VT + +++ L R +V++ N T A L+ E F Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFIS-------------A 105 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 Y+P + + +++ R+ A +L ++ SV+ P Sbjct: 106 SDLVYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++ Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF EE+E + FDP T + + + R + P Y+ E+ + +K Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSDEQKKEYQNILKYY--------- 275 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + E GY E + + Y +L Sbjct: 276 -------------SSSLHIPEIPEAGYGIYYEELVPLVRENHG------ILSYFSEPPIL 316 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + +I + R + E + L + D EEF L+ Sbjct: 317 LFPSPNSVNQRILHLEREYLSLFEKRSQ--EVLCAPPDKLLSFGEEFRVLSELVGLSFVG 374 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 G D+V + I EVR +++ RA ++++T+ Sbjct: 375 LPPRN----GSDLVSCLKEAPAFKGKIREVREKISEL---------RAEGGWKIVLTSSF 421 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L E+ G + ++ I L + D + ++ LR G Sbjct: 422 EAQTKRLQGLFEKEGIVL------LNEGATEPIPFHLGKHKSDAFLVLSELRNGFIFENQ 475 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 ++ + + D G + R + + + D I R K Sbjct: 476 KILILSENDIFGRE------YKRKTRFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKI 529 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQ 633 ++ N G + + + G + + + P + + Sbjct: 530 ERTNA------GGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGTESPRLDSLGKNTWK 583 Query: 634 QKIHELEGLMMQHAQNL 650 + ++ + A++L Sbjct: 584 KTKDRVQKAVETLAEDL 600 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 100/308 (32%), Gaps = 28/308 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRP 427 + + + ++ATP L + + + + T + +E Sbjct: 763 EQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYV 822 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 + D + IR + +V E T+YL E V LH + E Sbjct: 823 LEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDEI 882 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E + D ++D+LV ++ G+DMP V+ + + AD G + L Q GR R+ Sbjct: 883 EETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRS 938 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + P + E+R +Y E G + D+ G Sbjct: 939 DR---KAFAYLLLPKDRVVTEQAEKRLNTIYEYQE----LGSGFKVAMRDLEIRGAGNLL 991 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQI 658 K + V D+ + L++ I ++G + F I Sbjct: 992 GKEQSGD-------IMEVGFDLYVRMLEEAIARIKGEEVVVEVRTSVTLNTNFFIPETYI 1044 Query: 659 RDQLHQLR 666 D ++ Sbjct: 1045 SDTRQKIE 1052 Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 32/309 (10%), Positives = 85/309 (27%), Gaps = 18/309 (5%) Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + L + + + + Sbjct: 582 WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAI 641 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK----RMA 459 + V + + + +D ++ + + + + A ++++ T + Sbjct: 642 ---EAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHY 698 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLREGLDMPEVSLV 518 + RV + + E EI+ D LG+ D+++G +L L + L+ Sbjct: 699 NTFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNLGLL 758 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 I + + G E R N +L + T R Sbjct: 759 IIDEEQRFGVNHKEA--------IKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIAT 810 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG--KSRPIVEPDNVPMDMSPKALQQKI 636 ++ + + + + L + + G+ + + + + I Sbjct: 811 PPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSI 870 Query: 637 HELEGLMMQ 645 L G M + Sbjct: 871 GILHGQMTE 879 >UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=Lactococcus lactis RepID=O66085_9LACT Length = 455 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 185/273 (67%), Positives = 226/273 (82%), Gaps = 1/273 (0%) Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 QRL QRT +D+EM+ E+GYC+G+ENYSR + GR GEPP TL D+ P D ++++DESH+T Sbjct: 177 QRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMT 236 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + Q+ GMY GDRARKE L YGFRLPSALDNRPLK EEFE+ Q +YVSATPG+YE+E+ Sbjct: 237 MGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQ 296 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + +V+Q++RPTGLLDP++EVRP+ Q+DDL+ EI +RA NERV VTTLTK+M+EDLT Sbjct: 297 TDT-IVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLT 355 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 Y +E G +V+Y+HSDI T+ER EIIRDLRLG FDVLVGINLLREG+D+PEVSLVAILDA Sbjct: 356 AYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDA 415 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 DKEGFLR+ER LIQTIGRAARN G ILY D Sbjct: 416 DKEGFLRNERGLIQTIGRAARNSEGHVILYSDM 448 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 209/673 (31%), Gaps = 52/673 (7%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR---PTMVLAPNKTLAAQLYGEMK 78 + L + A G+T + A + P +V+AP+++ A L ++ Sbjct: 8 EAIRAVLSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVA 67 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---- 134 F P + P ++P+ DT + S + R++ + Sbjct: 68 FFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLG 127 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV+++ + + + + L L D+ A RL Y R GTF Sbjct: 128 PVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFA 187 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR- 253 VRG VID+F R+ELF + VE + LFDP + + + + + ++P V Sbjct: 188 VRGGVIDVFTPLY-RYPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEG 246 Query: 254 ----ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 RI+ A + A R+VL + E + T + L + Sbjct: 247 AEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHTHLAPLASYLVAGDA 306 Query: 310 SR----FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR------ARKE 359 + G+ D +D+ + P D Sbjct: 307 PPACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDGRLAFPPSDHYVSPDELRATLAEHAY 366 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL------EKSGGDVVDQVV 413 L G + A + L + A AP+ + + VD Sbjct: 367 RLEARGLEMYQAAADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDNR 426 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L+ + + L+ I + V T A L L ++ Sbjct: 427 LLRASLERTR-RQAADELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTA 485 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + ER + L G V + L G + LV + + G Sbjct: 486 HVI------EERSVDVDALSPGAPPV-IYPGELSAGFALRTDKLVMLTADEIFGPR---- 534 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI-TPQGLNKK 592 R + + + ++A I + + + HGI +GL K Sbjct: 535 ----------RRTSVRQRAAARRARKALAGGISDFSQLAPGDHVVHAMHGIGLYRGLAKL 584 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 V + + +G P+ V + + ++ +L G+ Q A+ Sbjct: 585 PVSATGPAVDFLHIEYRGGQFYLPVYRLGEVSRYVGAEGHAPRLDKLGGVTWQKARKKAS 644 Query: 653 EEAAQIRDQLHQL 665 + + ++L +L Sbjct: 645 AQVKALAEELLKL 657 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 61/446 (13%), Positives = 113/446 (25%), Gaps = 66/446 (14%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + + + P V + ++ A + Sbjct: 689 PDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAALLAPTTVLV 748 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q E R L A + +V +H + + Sbjct: 749 EQHYATVCER---FAGWPVSVGRLSRFQSRAEQLDT---IKGLAAGTVDLVVGTHRVLSK 802 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G L + ++ATP L + Sbjct: 803 DVRFKDLGLLVIDEEQRFGVTHKERLKRV--------RTQLDVLTLTATPIPRTLHLAMS 854 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR-------- 457 + D + T D VA D +L E IR+ +V Sbjct: 855 GLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSKG 914 Query: 458 ---------------------MAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRL 494 ++ E+L R H + +++ D Sbjct: 915 KVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVS 974 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G ++LV ++ GLD+ + + + AD G + L Q GR R+ + Sbjct: 975 GNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQ----LYQLRGRIGRSKQR---AFC 1027 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + P K + RRR + + E G G D+ G + Sbjct: 1028 YLLVPPPEK-LSSDARRRLETLQRFSELG---AGFQIASHDLEIRGGGELLGAKQSG--- 1080 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELE 640 V + L++ + EL Sbjct: 1081 ----AIAAVGFEAYAAMLEEAVAELR 1102 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 159/474 (33%), Gaps = 70/474 (14%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 ++ +A + +R +VL + A +L + F P + Sbjct: 16 NLSQGSLPLALARYLPH-KRLKVVLTQDAEQALRLQTAWRFFRPHDTA------------ 62 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKM 157 ++P +T + S ++ + RLSA + V+ V+ P Sbjct: 63 -VFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGR 121 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L G +D + L + Y G F VRG ++D+FP S+ + R++LF Sbjct: 122 TFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLF 180 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D+E++ + FD T + +S + + P + T E +EE+ Sbjct: 181 DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPND---- 236 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + ++ + +G+E Y TLFDY+ D L V Sbjct: 237 -------------AAVYKAVSNGHFGAGVEYYLPLFFE----NELETLFDYIGEDALFVS 279 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + ++R E + L PQ +Y+SA Sbjct: 280 L--GDVHAEANRFWSDVKSRY---------------AMAQGDETYPPLLPQHLYLSADVF 322 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA-AINERVLVTTLTK 456 L+ G + D + L D + Q D+ L ++ A R+L+ + Sbjct: 323 AGRLKNYGQVLPDVSGKEHALPDLAVNR-----QSDEPLQALKDFQTAFEGRILLCAESL 377 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 E + +L+++G + + + + +++ + L G Sbjct: 378 GRRETMLGFLQQNGLKAKSVSD----------WQGFLSAHEPLMITVAPLAYGF 421 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 103/319 (32%), Gaps = 31/319 (9%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L + +V +H + + +G R L Sbjct: 925 LEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRL--------RA 976 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAA 444 + ++ATP L + + D + T + V + + + Sbjct: 977 NVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELK 1036 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V E++ E LE R H + E +++RD F+VL+ Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLC 1096 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + I ADK G + L Q GR R+ + Y +TP Sbjct: 1097 STIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPEY- 1148 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 I + +R +E G G + D+ G + + E Sbjct: 1149 --ITKDAEKRLDAIAAADELG---AGFTLAMQDLEIRGAGEILGEGQSG-------EMIQ 1196 Query: 623 VPMDMSPKALQQKIHELEG 641 V + + L+Q + +L+ Sbjct: 1197 VGFTLYTEMLKQAVRDLKK 1215 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 112/644 (17%), Positives = 200/644 (31%), Gaps = 67/644 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ +++ E L L G+ +G+ A + DL R ++ P + A Sbjct: 2 YEALLKSTAEYQKIAESLHT-PGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++K AV P D + E RLS A+ Sbjct: 61 THFADDLKALGLTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGAL 105 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V A+ D +L+ L L GM+ ++ A++ RL Y R Q Sbjct: 106 AGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDG 165 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG+++DI+ A RVE +D+E++ L+ FD LT + ++ + + P Sbjct: 166 PGQFSVRGDIVDIY-APDMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREV 224 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E A + ++ + + + + T+ DL ++ ++ Y Sbjct: 225 LFGS----------TAETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKY 274 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P TL D+L + V+DE L+E G L Sbjct: 275 YGI-----RYPQPATLLDHL-DSPIFVLDEVGGIRDAQKATEYRRGEELTGLLEEG-VLC 327 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 LD ++ A + + N+ + + D + Sbjct: 328 PGLDVLYQTMDDLAIAAQKQ--STLLCENFLRGMNEFKLKDLINVEA------FAAPNWG 379 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L ++ A V + + T + A LT L + G V + Sbjct: 380 GDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVS-----MS-------- 426 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 RD+R + V V L G P I + + G + + R N Sbjct: 427 RDVRPAKGIVQVLPGHLTAGCTFPFAHAAVIS-SRRHGLDEEAAAENKR-----RKKNKN 480 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 A+ I P + E G K + I G ++ Sbjct: 481 ALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAI-----KDYLKIQYSGSDVLYVPVT 535 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 P + K + + + A+ + E Sbjct: 536 QLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQE 579 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 35/409 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP + + + ++ Q L M Sbjct: 632 YPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVK 691 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G+ LS + L + + +V +H + + + + Sbjct: 692 IGM------LSRFRTAKQQKETLRGLQSGSVDIVVGTHRLLSKDVRFHDLGLVIIDEEQR 745 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PI 422 +G + L + + + +SATP L + + D ++ Sbjct: 746 FGVKHKEKLKENFIGVDM--------LTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQP 797 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 +E + L +++ A +V E ++ + RV H + Sbjct: 798 VETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAHVSQLVPGARVGIAHGKM 857 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + + L GE D+LV L+ G+D+ + + I DAD+ G + L Q G Sbjct: 858 TEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMGLAQ----LYQIRG 913 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ KA Y K + + ++R + G G + D+ G Sbjct: 914 RVGRSGR-KAYAYFTF---RRDKTLTDIAQKRLSAIREFTAFG---SGFRIAMRDLQIRG 966 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 ++ + V D+ K L Q I +G +Q ++ Sbjct: 967 AGSLLGHSQ-------HGHMEAVGYDLYVKMLGQAIARAKGEPVQRDKS 1008 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 197/655 (30%), Gaps = 82/655 (12%) Query: 25 EEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ------RPTMVLAPNKTLAAQLYGEMK 78 + L G GV F IA + L + + +A + A+L +++ Sbjct: 19 LDRLAGGDGAIRASGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLE 78 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRD 135 F P V F P+ D S + IE R++ + + Sbjct: 79 FFAPGADVLSF-------------PAWDCVPYDRVSPDSDIEARRIATLARLAHAKGGKP 125 Query: 136 VVVV-ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 ++V +V+A P K L G + ++ RL + R + G + Sbjct: 126 AIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPGEY 185 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 VRG ++D++ R++ F + +E + FDP+T + +T T+ P + + Sbjct: 186 AVRGGILDLYVPGHAR-PARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLPISEIPSGD 244 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + + E + E ++ G+E++ Sbjct: 245 AAVKMFRQRYVELFGPGKGD-----------------DALYEAVSAGTRYPGVEHWLPLF 287 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL- 372 +LFDYLP + + + + + +E Sbjct: 288 YDG-----MDSLFDYLPNAVVTLDHLADDAAARRLETIADHYEARREGLEQRSFGAPPYK 342 Query: 373 ----DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + L EE++A + P K+ + G + Sbjct: 343 PLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQI--DFKGKQGRSFALERSESS 400 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + IR ++ +R ++ T E L L H R+ + + + + + Sbjct: 401 DKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVANIAEVRKADKS 460 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 L+G + G + P+ L I + D G + I R Sbjct: 461 AVSFA------LLG---IESGYETPD--LAIIAEQDILGD--------RLIRRRKAKKAS 501 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++ +TP ++ I G V++ G + Sbjct: 502 DVLVEASSLTPGDL-----MVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGDKLFLPI 556 Query: 609 KGRGKSRPI--VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + E + + Q + +L+ + A+ L + A +R+ Sbjct: 557 ENMELLTRYGSDEGTAQLDKLGGASWQGRKAKLKKRIRAMAEEL--IKVAALREM 609 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAIN 446 + ++ATP L+ + V + V T +D + + L + + Sbjct: 782 HVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLAVRTFITPFDPVTLREALLRERYRG 841 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + +++ +L E +R++ H + + +I+ EFDVL+ Sbjct: 842 GQSFYVVPRISDLDEVATFLREQVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLSTT 901 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P + + + AD G + L Q GR R+ Y P K Sbjct: 902 IVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKTR---AYAMFTIPPNGKI 954 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + E+R K G D+ G + V Sbjct: 955 TPQAEKR----LKVLHSLDSLGAGFTLASHDLDLRGAGNLLGDEQSG-------HIKEVG 1003 Query: 625 MDMSPKALQQKIHELE 640 ++ L++ + L+ Sbjct: 1004 YELYQSMLEEAVAALK 1019 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 101/653 (15%), Positives = 208/653 (31%), Gaps = 95/653 (14%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L G+ G + +++ +++ N++ A L + + Sbjct: 32 LTGLKGGSDSLFFSSLFNK-NESILIIKENESDAMLLSQSLNFY---------------N 75 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYL 155 P Y P DT S I Q R++ ++ + +++ +V+A+ D Sbjct: 76 IPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLK 135 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 K+ +HL VG +D + L +L Y + ++GT VRG ++D+F E + +R+E Sbjct: 136 KLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEY-NNPIRIE 194 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LFD+E+E + LF+ G+ ++ IYP + + + + Sbjct: 195 LFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFINN------------- 241 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + + Y +G EN + T+FDY + Sbjct: 242 -----------NEIEDELKDNIIKRKYFAGSENLLPIFY-----KDLETIFDYFDYGYIF 285 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 D + KE + D L + ++ + Sbjct: 286 TDD----ALKLKNKFITIIDTIKENFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAINIS 341 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL---------SEIRQRAAIN 446 P +++ + + + L D + V+ + ++ + Sbjct: 342 PFITDIDIYKFHFEEGISFKSRLTDFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDL 401 Query: 447 ERVLVTTLTKRMAEDL---TEYLEEHGERVRYLHSD-----------IDTVERMEIIRDL 492 ++T ED+ E + +D DT ++ EI +D Sbjct: 402 SPTIITENDIEDTEDIKDKEENSDNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDY 461 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 E + + G ++ + I D + G R + I + Sbjct: 462 SKNENNFYIITAQSSSGFIKDDIKTIFIADWEVFGRKRKKVRKIPKV------NKNLIET 515 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + D A + + GL +K+ + I AKG Sbjct: 516 FVDLNVGDYAVHVNYGIGKYL--------------GLTRKMSN-GKEKDYITLEYAKGDK 560 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V +S K+ +L G ++ E+A +L +L Sbjct: 561 LYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAREDALATARELIKL 613 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 121/350 (34%), Gaps = 38/350 (10%) Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + L ++ +H+ + + + +G + AL L Sbjct: 739 ELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKHKEALKKL--------RLE 790 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAI 445 + +SATP L + + D + T L+ I V D +++ I + Sbjct: 791 TDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKR 850 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V E +++ + R H + + +I+ D ++D+LV Sbjct: 851 EGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVST 910 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I +A+K G L Q GR R+ Y PS Sbjct: 911 TIIENGIDIPNANTILIDNANKLGLSE----LYQLRGRVGRSDRE---AYAYMFYPSDL- 962 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 A+ E +R + EH G + D+ G NI + G Sbjct: 963 ALTEVAYKRLEAI---SEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQ-------- 1011 Query: 623 VPMDMSPKALQQKIHELEGLMMQHA-------QNLEFEEAAQIRDQLHQL 665 V ++ + L++ +E +G + + ++ F + I D ++ Sbjct: 1012 VGYELYTQMLEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKI 1061 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 210/692 (30%), Gaps = 92/692 (13%) Query: 7 LNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 L + P AIR + +TL+G IA++ ++ T Sbjct: 94 LEAPLHPLLKTLNQLSNWAAIRTAASAQPTERSARTLIGAVAGTHAALIADISTAVRDTT 153 Query: 61 -----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 +++AP A L ++ + P + F P+ +T + S Sbjct: 154 AEALSLIIAPTDRQAEDLAAALRSYLPAADIALF-------------PAWETLPHERLSP 200 Query: 116 NEHIEQMRLSATKAM---LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 RL +AM ++R VV+A V A+ + +HL G + + Sbjct: 201 RSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEPVHLVRGEEYPFKDV 260 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 +R L + Y+R D +RG + VRG +ID+FP + +R+E F +E++ + F Sbjct: 261 VRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQ 319 Query: 233 QIV---STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + T+ P + E + +A +K + Sbjct: 320 RTLSGGEELTELTLLPCRELLITPEVMSRA-ARLKADYP--------------------A 358 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 LE + Y G+E+ + L E TL + LPA +++ E + Sbjct: 359 AAAMLEKIAGGIYVEGMESLTPLL-----IESMNTLTELLPAGSMIINVEPERVRARAED 413 Query: 350 MYRGDRAR----KETLVEYGF---RLPSALDNRPLKFEEFEALAPQTIYVSATP------ 396 + + +T E L F + Q + + Sbjct: 414 LVATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITEL 473 Query: 397 --GNYELEKSGGDVVDQVV---RPTGLLDPIIEVRP---VATQVDDLLSEIRQRAAINER 448 LE + G + +Q + G+ + P V+ +LS++ Sbjct: 474 VTDADLLEDAAGALQNQNIADAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQQWT 533 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VL T + + L + + ++E L G + V Sbjct: 534 VLALTNGRGSTDRLIDLFHSGEGAPAVPAARRTSLEADPA-GKLEHGIVE--VCEAPASA 590 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNVNGKAIL-----YGDKITPS 560 G + E L +A+ G + Q R + Y Sbjct: 591 GFLVEEAKLAVFTEAELLGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHG 650 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 + + + T R N + L + G + + V Sbjct: 651 IGRFVEMTSRPVAGASPVNGV-QPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVG 709 Query: 620 PDNVPMD-MSPKALQQKIHELEGLMMQHAQNL 650 +N + M + + + A +L Sbjct: 710 GENPSLSKMGGSDWAKTKSRARKAVKEIAADL 741 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 60/411 (14%), Positives = 119/411 (28%), Gaps = 37/411 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P ++ + ++ A + + Q + E S Sbjct: 794 PMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSER------FS 847 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G R LS + + + + + + VV +H + + + Sbjct: 848 GFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGLVIIDEEQRF 907 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + +SATP LE S + + T + Sbjct: 908 GVEHKEKL--------KQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPV 959 Query: 425 VRPVATQVD-DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V + D + + IR+ +V +D+ + + R H + Sbjct: 960 LTFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMS 1019 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +II D FDVLV ++ GLD+ + + + A G + + + Sbjct: 1020 ESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQ-----LHQLRG 1074 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 +A Y + K +GE R K H GL + D+ G Sbjct: 1075 RVGRGRERAYAYF---LYPVDKTLGEIAHERLKAV---ATHNELGAGLQLAMKDLEIRGA 1128 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 N+ + G V D+ + + + + G + + Sbjct: 1129 GNLLGGEQSG--------HIAGVGFDLYLRLVGEAVANYRGEKEEREVETK 1171 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 100/663 (15%), Positives = 212/663 (31%), Gaps = 100/663 (15%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLED-----------GLAHQTLLGVTGSGKTFTIANVIAD 55 + + + Q +++ L + L D +QT+ V + + +A + Sbjct: 1 MVTPLPATFHQLASVQALGKVLADLPGIAALAASLRPGYQTIAPVPAAARPALLAALAYH 60 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 PT+ + + A + +++++ + V F P +D + S Sbjct: 61 RTTPTLYITLSAESALRAADDLRQWLGSDQVWLF-------------PPADALPYEQMSP 107 Query: 116 NEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + RL+ + + V+V SV A+ P + L GM + + Sbjct: 108 GRDVLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETV 167 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L + Y R + G RG ++D++P D++ LR+E FD+E++ L FDP T + Sbjct: 168 VTLLDNGYQRVAMVEEPGELSRRGAILDVWPPG-DELPLRIEWFDDEIDSLRRFDPATQR 226 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + R I P R + + RR+V E Sbjct: 227 SEQRLERADIGPPHEIPFWRRDEALRRIDALDMSQLRREVRDEW-------------AVA 273 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F + TL DYLP ++ + E H+ + Sbjct: 274 REQLAGGQRFEGRAFYAPFFY-----DQTATLLDYLPPQSMVALAEGHLLAQHADEIDVQ 328 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 ++ L+ G LP L++ E + ++ S + D + Sbjct: 329 AAGYRDQLLALGE-LPPDFPRPYLRWSELHLKESAKLV--------VVDLSHNEYPDALP 379 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT-EYLEEHGER 472 + + P+ Q+ L+ + ++ E V+ T ++L E L + Sbjct: 380 PLSFGVPPL-----YGGQLRRLIDTVVEQVRGGELVVAVTAQAARLQELVGERLAQETVS 434 Query: 473 VRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R+ +H L G + ++ L + D++ G + Sbjct: 435 GRFVPIHGG--------------------------LEAGFTLADLHLTLLTDSEIFGVRQ 468 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 R L + + A I + + T + Sbjct: 469 R-RPLAERRRKTGTTDR--AAFLRTLKPGDYVVHIEHGIAIFDGMIRR------TVSEVE 519 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHA 647 ++ + + G++ + + + P + + ++ ++ + A Sbjct: 520 REYLVLRYAGEDKIYVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLA 579 Query: 648 QNL 650 + L Sbjct: 580 EEL 582 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 128/408 (31%), Gaps = 35/408 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P V + ++ A + + Q + M + Sbjct: 634 TPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFDTFRKRMAA--FP 691 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E SRF + + L + ++ +H + + Sbjct: 692 VTVEMLSRF----RSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQR 747 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + + ++ATP L + + D V T D I Sbjct: 748 FGVRHKERL--------KLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIP 799 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 V D L+ E IR+ +V V + + E L R H + Sbjct: 800 IKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQL 859 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ D G +DVLV ++ GLD+P + + I DA G + L Q G Sbjct: 860 AERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQ----LYQLRG 915 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R G Y + + A+ + R R + + E G G + D+ G Sbjct: 916 RVGR---GATRAYAYLL-YNAARVMTNDARLRLEAIQEATELG---AGFRIAMRDLEIRG 968 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + V D+ + L+Q + +L+ + + A+ Sbjct: 969 AGNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRKLKQDVDELAE 1009 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 112/662 (16%), Positives = 216/662 (32%), Gaps = 96/662 (14%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + I+ L+ L G L S A + A++ T+++ P Sbjct: 3 TKPLIELLSKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRP 62 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKD-ASVNEHIEQMRLSA 126 A + + + + + P+ D + AS + RLSA Sbjct: 63 EEAQNVADSLSTYLWD------------PKRVLLWPAHDDLPYERIASPTQDSPFRRLSA 110 Query: 127 TKAMLE--RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + +L R +++VASV +I + + G +D A+ R+AEL Y+ Sbjct: 111 LERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSP 170 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F RG + DI+ SD + +R+ELF +EVE + LFDP T + I F+I Sbjct: 171 VASVEEVGQFSRRGGIFDIWTPSSD-LPIRLELFGDEVESIRLFDPETQRSTREIESFSI 229 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 E + + L + + +T + LE ++ Sbjct: 230 ISPYEIPV-------------AEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLP 276 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + + L DYL ++ D + R +E Sbjct: 277 AIHSIIAPYF-----PSGLGNLLDYLSEGTIVFTDLPDRLALTASTL-RSHIEGMRLEME 330 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +PS L + ++ E + A P + + G++ P Sbjct: 331 QSGDIPSNLLSPVFEWSYIEDR------LKALPKIEPVNSAEGNLKFY---------PAP 375 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++R D++ +R V + T R E + +EH + Sbjct: 376 QIRSST---IDIVDNLRSWIDEGRTVFIVT---RHHERIRHVAKEHNLPLA--------- 420 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + D++ G+ ++ +++G +++LV + D + G+ R A Sbjct: 421 ----LDEDVKQGQMFIV--PGSIQDGWICDDINLVVLSDTELWGY---------REPRRA 465 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R+ P A + + +HG+ N A + + Sbjct: 466 RS-------------PRKAPQRVFLADLQPGSYVVHVDHGVAKYVGNVMRGSSGAEREYL 512 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A G P+ + D + + + + L + + A Q+ +L Sbjct: 513 VLEYAGGDRLYVPVDQIDRISPYIG--GGEPALSRLGTADWARTKRRAKKAADQLAKELL 570 Query: 664 QL 665 QL Sbjct: 571 QL 572 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 123/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + N G Sbjct: 622 PMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFRSRFNPFGIRV 681 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R R + + L + +V +H + + + + Sbjct: 682 EMLSRLRTKKERDQ------VLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDEEQRF 735 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L+ + V D V T D + Sbjct: 736 GVKHKETLKQI--------RTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPV 787 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + + D ++ + I + +V + + L+E R H + Sbjct: 788 YTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMP 847 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D +DVLV ++ GLD+P + + + DA G + L Q GR Sbjct: 848 EQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQ----LYQLRGR 903 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ N Y + A+ + ++R E E G + D+ G Sbjct: 904 VGRSSNR---AYAYLMYRPDARMTEDAQKRLEAI----SEATQLGAGFRVAMKDLEIRGA 956 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N + G + +++ + +++ + EL Sbjct: 957 GNFLGPEQSG--------HVYAIGLELYTQMIERAVQELR 988 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 104/617 (16%), Positives = 205/617 (33%), Gaps = 73/617 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 R ++++A A +++ ++ + EN P +DT + S Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGEN--------------VMLFPPTDTLPYEHMS 99 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 100 ADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL 159 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 160 AHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQR 218 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + I P R K + + + + Sbjct: 219 SDKRVRQIQISPAHEIPFWRRT-------------EAIKRIEQLQIASLRREVQHEWATA 265 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F L+ +LPA ++++ E H Q + Sbjct: 266 REHLETGQRFEGRAFYAPFFRTPHEAAEAG-LWQHLPASAIILLSEEHELNAQGIELQSH 324 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + T +E LP + + + ++ + +++ V + Sbjct: 325 ADLVRSTQIENNE-LPPDFPFPLIAWTFIRRSIQRWSCLNLSNQPIADDQNDSFVHE--- 380 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ + Q D L ++R+R ERV++ + A L E +H Sbjct: 381 -----INTFSQAASYGGQTDRLFEDLRERLVGGERVVLISP---QASRLRELASQHNL-- 430 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L + D + + + G +++ L G + L + D++ G+ + R Sbjct: 431 -ALIGEEDGPDVDD--PPFQSGT--IIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQ--R 483 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + T R R + + I EHGI ++ Sbjct: 484 RALSTRARKQRTESDRTAFLQSLKVGDYVVHI---------------EHGIAQYEGLSRI 528 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 A + + A G P+ + D V + + + L + A+ Sbjct: 529 EASGAEREFLVLRYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKR---- 584 Query: 654 EAAQIRDQLHQLRELFI 670 ++R + +L + Sbjct: 585 ---KVRADVEELATELL 598 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 137/433 (31%), Gaps = 37/433 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + M + Sbjct: 650 PMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRRMQ--MFPV 707 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF ++ + + + +V +H + + + + Sbjct: 708 RIEMLSRF----RSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRF 763 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + + ++ATP + + + D V T D + Sbjct: 764 GVKDKERLKKLRHEID--------VLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPI 815 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ + I + N + + + L++ R H + Sbjct: 816 KTYVQPYNEMLVRDAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMP 875 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++I G FDV V ++ G+D+P + + I DA G + L Q GR Sbjct: 876 EKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQ----LYQLRGR 931 Query: 542 AARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R+ G A ++ + KA+GE ++R + + E G G + D+ G Sbjct: 932 VGRSTQRGYAYMF-----YNPTKAMGEEAQKRLEAIQEATELG---AGFRIAMRDLEIRG 983 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + D+ + L Q + + + Q E+ AQ Sbjct: 984 TGNLLGAEQSGN-------ITTIGFDLYSRLLSQAVERVREERKRGQQQKSGEQKAQRAR 1036 Query: 661 QLHQLRELFIAAS 673 + LR + ++ Sbjct: 1037 AVEALRRAAVVSA 1049 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 214/664 (32%), Gaps = 122/664 (18%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + ++++++ L+ G Q + G++G+ +F +A + +++ P++ A Sbjct: 4 LLKLFCEAPSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L E+K + E + P + + + RL + A+ Sbjct: 62 LTLAAELKLLWGEEVFVFLPREIFGLGPSL--------------PSAFVPRQRLLSLAAL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R+ VVV + + + GL P+ + L G + + +RL E Y R Sbjct: 108 ARRQGVVVATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVP 167 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG ++D FP S + +RVE +E+ R++ FDP + + + + + P Sbjct: 168 GQFARRGGIVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVP 226 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 P E++ E + S E+ Sbjct: 227 NPCTGR--------------------------------------EILPESWFLSQGEDSF 248 Query: 311 RF--LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + +L YLP L + E+ ++ Sbjct: 249 PYPEVLLPCLFPRVVSLLAYLPPGAPLALVEAQAAEKAAREAEERQMEICREMIAKKKLP 308 Query: 369 PSALDNR--PLKFEEFEALAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + +L P + +S P L + + Sbjct: 309 EESRKAFLSWSEVAKELSLYPHRLRLSFLPEKNGEVLGLA-----------------VRT 351 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L EI++ + RV++ + + + E L+E+G R Sbjct: 352 APSFLGKFAQLAEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGIIPRLTPDSAPV-- 408 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 G V+ G LREG PE V + A+ G ++ Sbjct: 409 ----------GTVTVVKG-GNLREGFIFPEAQFVLLTPAEIFGRRQAT------------ 445 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 +P+ + E + + + EHGI G+ + +V + G Sbjct: 446 ------------FSPTPTPVVEEEREFKPGEYVVHPEHGI---GIYRGLVQLSVEGVTRE 490 Query: 605 KTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + G+ R + D + + + + + ++ L G + + + A + + Sbjct: 491 YALIQYAGEDRLYLPADQLGVLERYVGGEGAKPRLSRLGGGEWKRVRARVKQAATDVARE 550 Query: 662 LHQL 665 L +L Sbjct: 551 LLRL 554 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 128/431 (29%), Gaps = 39/431 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + + Sbjct: 604 PMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTTILAQQHYRTF------SSRFA 657 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +L + L A + +V +H + + + Sbjct: 658 PYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDVQFRDLGLVIIDEEQRF 717 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G L + ++ATP L S + D T D + Sbjct: 718 GVLQKEKLKLL--------RKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPV 769 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 E V + IR+ A +V ++ +++ R Y H + Sbjct: 770 ETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMP 829 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 I+ D ++DVLV ++ GLD+ V+ + + DAD+ G + L Q GR Sbjct: 830 EAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQ----LYQLRGR 885 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + K I E + R + K G G D+ G Sbjct: 886 VGRTNR---LAYAYFL-YRRDKIINEAAKARLRAIKDFTSLG---AGFKVAKRDLEIRGA 938 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LEFEEAAQI 658 N+ T+ G V +++ + LQ+ I EL+G + + +E +A I Sbjct: 939 GNLLGTEQHG--------HIQAVGLELYCRLLQEAIKELKGEEVVPPVDPVIELTVSAYI 990 Query: 659 RDQLHQLRELF 669 D + Sbjct: 991 PDDYVPFDQKL 1001 >UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DUF1_STRAG Length = 451 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 170/475 (35%), Gaps = 47/475 (9%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 Q + +R GL Q ++G +G+ K IA+ L + MV+ +T + + Sbjct: 5 ELFSQNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDK 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ E+ V F + D + + RLSA + + + Sbjct: 64 LSSDISSLIGEDNVYQFF-------------ADDVPAAEFIFSSLDKSISRLSALRFLKD 110 Query: 133 RR-DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 + V++ S+S + L P+++ K +G + + L L Y + Q F Sbjct: 111 PEKNGVLITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSP 170 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG+++DIF + + R+E F +E++ + FD T + + + I P + Sbjct: 171 GEFSQRGDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDII 229 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 +A ++++ L +V L S I + Sbjct: 230 LQDADFERAKKKLEGYLVTASEVQR------------TYLSEVLSTTENHFKHSDIRRFL 277 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + G + DY+P L VD+ + + + + ++ G S Sbjct: 278 SIFYEKEWG-----ILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HS 331 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 +L+ +++ P T + + G L+ Q ++ Sbjct: 332 SLNYFSDPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFN 380 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVE 484 Q L+ EI + VL+ +++ L E L+E+G + +DI E Sbjct: 381 QFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLDLIISDKNDIVQKE 435 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 225 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 195/635 (30%), Gaps = 70/635 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L L + GV G + + + L RP + + P+ A QL ++ F Sbjct: 1 MDDLIRSLGQCKEPLDIYGVRGGAVAWLVGRL-GGLARPLLCVCPDDEQARQLATDLALF 59 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 P + P + + RL+A A+ + ++V Sbjct: 60 SD--------------LPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMV 105 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ A+ P+ + + G D + RLA Y R + G + +RG Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 +IDIFP + LR++ F + VE + FDP++ + V + + P + + P Sbjct: 166 IIDIFPPG-QEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPAADSPA 224 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ L R + + + Q ++ E + + +G + + L Sbjct: 225 -----QQALLERHRQWAASLQWDR-----QPSRQLEECLRQHRPFAGDQFFLPLLEPAAL 274 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 YLPA+ L++ + + Q ++R A + + D L Sbjct: 275 SP-----LAYLPANTLIIQVDHPRLL-QNLALHRERIASNYQELTATAQPALPPDELFLS 328 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 E+ Q P + L + R + L + Sbjct: 329 AEQLHGHFEQAAGARIFPLAPGEANGQRVFQIEAGNHVLLKQQLDLKRREEGLLAPLAQQ 388 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I+Q ERVL+ T R A + E L HG D I++ Sbjct: 389 IKQWRQQGERVLLACRTPRHAAKMAELLAGHG----VTDGDHC-----RILKQ------- 432 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 L G D+P + + + G R E AA A Sbjct: 433 ------PLSSGFDLPSEGEHWLSEGELFGDRRLES--------AAAKSRAPATKIVSHDE 478 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + RR Y I G+ ++I G + Sbjct: 479 INPG---DPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNSVGKYK 535 Query: 619 EPDNVPM---DMSPKALQQKIHELEGLMMQHAQNL 650 + + + +++ + Q A++L Sbjct: 536 GLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDL 570 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 110/308 (35%), Gaps = 22/308 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + ++ATP L+ S V D V + + Sbjct: 733 EHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTFI 792 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 A D ++ E I + + +V + ++ ++ H + + Sbjct: 793 ARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQL 852 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 EI+ E +VLV ++ GLD+P+ + + I AD+ G + Q GR R+ Sbjct: 853 EEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLAE----IYQLRGRVGRS 908 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y + P++ GE R + YNE G G + D+ G Sbjct: 909 RQQ---AYAYLLVPALDDLAGEARHRLQALMDYNELGG----GFKLALSDLQIRGGGNIL 961 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ-NLEFEEAAQIRDQLHQ 664 +++ V DM LQ+ + +L+ + + + + + E A++ ++ Sbjct: 962 GESQSGN-------IAAVGYDMYLDLLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEP 1014 Query: 665 LRELFIAA 672 +L IAA Sbjct: 1015 EIKLAIAA 1022 Score = 42.5 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 80/258 (31%), Gaps = 17/258 (6%) Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHG 470 + +D ++ + + + + +V V T ++ A E L Sbjct: 620 SSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAVLVPTTVLAEQHAATFRERLAGFP 679 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFL 529 R+ L+ + E+ ++ DL + D+++G + LL + + L+ + + + G Sbjct: 680 VRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEEHRFGVS 739 Query: 530 RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 E+ + +G +L + R + Sbjct: 740 HKEK--------IKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTF 791 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK--IHELEGLMMQHA 647 + D++ + + G+ + + L + G M A Sbjct: 792 IARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMP--A 849 Query: 648 QNLEFEEAAQIRDQLHQL 665 + LE +R +++ L Sbjct: 850 RQLEEIMVRFVRREINVL 867 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 225 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 186/612 (30%), Gaps = 79/612 (12%) Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + AA+L + F P V F P+ D S N I Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILF-------------PAWDCLPYDRVSPNGDIVAR 91 Query: 123 RLSATKAMLE----RRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLA 177 R+ A +LE R +++V +V+A P L + VG I+ + R LA Sbjct: 92 RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y + + G F VRG ++D+FP + + LR++LF ++++ + FDP+T Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F + P + I + +E A E + Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRELFGA-----------------VTGDDPLYEAV 253 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 + +G+E++ TLFDY+P + + Q R Sbjct: 254 SAGRKYAGMEHWLPLFHSGL-----ETLFDYMPDAPVTLDPHVEEARDQRLEQVRDFFEA 308 Query: 358 KETLVEYGF------RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + TL E P L E ++ TP S D+ D Sbjct: 309 RRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHLAVRPVAQLTPFAAAEAGSNPDLTDA 368 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 R G V+ D L + A RV+V + + L L+EHG Sbjct: 369 GGRK-GRDFADARVQSGVNVYDVLREHVGALLADGRRVVVAGYSTGARDRLRSVLKEHGI 427 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL----LREGLDMPEVSLVAILDADKEG 527 ER++ + E L L G P L I + D G Sbjct: 428 ------------ERVKAVESWAEVEGLPRTTTALVVLALDHGFTAPG--LAVITEQDILG 473 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 L++ GR R + I R Y+ + Sbjct: 474 -----DRLVRAGGRKKRRAANFIAEASGLNPGDLVVHIDHGIGR------YDGLETLDVG 522 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQ 645 G + ++ G + + D+ + Q + ++ + Sbjct: 523 GAPHDCLRLVYEGGDKLYVPVENIEVLSRYGSEDSAGQLDRLGGAGWQSRKARVKKRLKD 582 Query: 646 HAQNLEFEEAAQ 657 A L A + Sbjct: 583 MAAALLRIAAER 594 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 102/316 (32%), Gaps = 31/316 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + R + +G + L Sbjct: 718 LADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQKERLKELRADI--------H 769 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L+ + V + + T +D + V ++ E I + Sbjct: 770 VLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGG 829 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + E + LEE +V H + + E++ ++DVL+ N+ Sbjct: 830 QSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFDEHKYDVLLATNI 889 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 + GLD+P + + + AD G + L Q GR R G A +T Sbjct: 890 IESGLDIPSANTLVVHRADLFGLAQ----LYQVRGRVGRAKVRGYAY-----LTYQPRTV 940 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + T ++R E G D+ G + + V Sbjct: 941 LSATAQQRLHVI---ETLDSLGAGFQLASHDMDIRGAGNLLGEEQSG-------HIREVG 990 Query: 625 MDMSPKALQQKIHELE 640 +++ + L++ + + Sbjct: 991 VELYQQMLEEAVADAR 1006 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 225 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 203/667 (30%), Gaps = 103/667 (15%) Query: 11 FKPSGDQPEAIRRLEEGL--EDGLAHQTLLGVTGSGKTFT--IANVIADLQRPTMVLAPN 66 P Q + + L + L+G+ ++ +++ + + ++A N Sbjct: 3 LFPKL-QEKLLETLSPFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLL-SDKTLWIIAEN 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + + F S++ ++P + + S + I R+ A Sbjct: 61 IEKSHNRMSSLLAF---------QSFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHA 111 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + + VVV + A+ P L ++ L+ G I++ A+ L L + R Sbjct: 112 LNLLAQGKVDVVVTTWPAVVRKTLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVL 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++ D +R+E D+ + + FD + ++ + R I P Sbjct: 172 QVSAPGEFAVRGAILDLYSPAHQD-PVRLEWDDDILASIRSFDINNQKSLAKLSRVEILP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + ++ P + L+ G Sbjct: 231 GSEWIPPTGNVKNG-----------------------------ALSDWLKDNPVTSLVPG 261 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E + + DY +L+++E + + R E L + Sbjct: 262 VERFIPSIYEDAQSP-----LDY-GRKPVLLIEEPSIYRQKKKEWEERIREGWEALTDSD 315 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 L + + L E + +Y + + D + +E Sbjct: 316 KVLLPSPEKAFLFEEAESPQLIEKLYPTI------------YLSDFSDQEDLPFSSPVE- 362 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 Q++D +E +VL T+ + E L G D ER Sbjct: 363 --SLLQIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPFFPASGLQDIEER 420 Query: 486 MEIIRDLRLGEFDVLVGINL--LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + R +V L + +G +P +++ + + F + I Sbjct: 421 EPLNRS--------VVWTILGDVEKGFYIPSDNILVLS--ENFLFRKRPEPRIHR----- 465 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 A I + E + + +HGI K+++ G+ Sbjct: 466 ------AFATATSIYRKDRPPL------NEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFF 513 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P+ D + P+ + + G + ++R ++ Sbjct: 514 VVEYRDLEKLYVPVDHADLLQPYRGPEGSTPTLDRIGGQTWNRTRQ-------KVRKEIE 566 Query: 664 QLRELFI 670 ++ + + Sbjct: 567 KISQDLV 573 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 31/282 (10%) Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRA 443 + + +SATP L+ S + T + T + I + Sbjct: 751 TSVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDREL 810 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A + +V + + YL + + H ++ E++ + +LV Sbjct: 811 ARDGQVFFIHNRVQTISRMVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILV 870 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P + + + AD G L Q GR R+ Y + PS Sbjct: 871 STAIVESGLDIPAANTIIVNRADMFGISE----LYQIRGRVGRSGQQ---AYAYFLIPSE 923 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +T R+R K + N G G + D+ G + Sbjct: 924 SG-LTDTARKRLKTLQDNTSLG---SGYQIAMRDMEIRGAGSLLGHQQ-------TGHIA 972 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 V +D+ + +++ I +E E R+++ Sbjct: 973 LVGLDLYLEMVEEAIQ----------SRIEPEAVPLAREEVR 1004 Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 10/142 (7%) Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT--- 455 + E + V + + PT +D +I + + + + A +V + T Sbjct: 607 PDQEDAWRAVCEDMEAPT-PMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVPTTLL 665 Query: 456 -KRMAEDLTEYLEEHGERVRYLHSDI--DTVERMEIIRDLRLGEFDVLVGIN-LLREGLD 511 K+ E + G VR H E + L LGE D+L+G L+ + Sbjct: 666 AKQHYESFLDRFS--GFPVRICHISRMVSQAEIRATRKKLSLGEIDILIGTTALISKETS 723 Query: 512 MPEVSLVAILDADKEGFLRSER 533 + L+ I + + G + E+ Sbjct: 724 FRNLGLLIIDEEQRFGVGQKEK 745 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 112/653 (17%), Positives = 207/653 (31%), Gaps = 77/653 (11%) Query: 13 PSGDQPEAIRRLEEGLEDGL--AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 P Q R L + + + G S + +A +IA++ P +++ A Sbjct: 8 PLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSA 67 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++ + E+ P++ P S+T + V+ + +R+ + Sbjct: 68 EEVTAGLAEYLPDDR------------DPTLWPVSETLPYELLPVDRSVSALRVELLARL 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V +VA A+ L P HL VG + A + L + Y Sbjct: 116 ARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQA 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 176 PGQVGRRGGIIDVFPPVGD-HALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEV 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + R +V E + L+ Q T Sbjct: 235 SLAQRDAALSALRQMDTTTLRPEVAEEWERSLQRLERGQVT------------------V 276 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L P +L DYL L+V ++ +E LP Sbjct: 277 GLELLAPLLLPEPASLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAGELP 336 Query: 370 SALDNRPLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S + L ++ + I P ++ + + P E+ Sbjct: 337 SGMPRPYLDWQAVADRLSGARQIAFGPVPTHWSPPVA--------IIPDARPVYGRELPA 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 A ++D L++++R+R A V++ + + LTE LEEH R Sbjct: 389 YAGRLDALVADVRERLADGWAVILASE---QSGRLTEVLEEHDIFPRTRKRPAGNGRIAP 445 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G +V+ + L G + + ++ + D + G+ R Sbjct: 446 PPEPPTPGTVEVV--YSRLNGGWEHGGIKVLLLTDREMFGYRRVAAP------------- 490 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 A+ Q + EHGI G + + + Sbjct: 491 --------APRRRAARRPPLLPSLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEY 542 Query: 608 AKGRGKSRPIVEPDNVPMDMSP-------KALQQKIHELEGLMMQHAQNLEFE 653 A P+ + D + + + ++ + + + + FE Sbjct: 543 AANDRLYLPVDQIDRITPYEGAGIEPKLTRLGSPEWARVKQRVRRAVREMAFE 595 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 118/401 (29%), Gaps = 37/401 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + Sbjct: 649 PMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRI 708 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R + + L + V+ +H + + + + + Sbjct: 709 EMLSRLR------SRKEQTQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRF 762 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + ++ATP L + + D V T + Sbjct: 763 GVAHKEHFKRL--------RTNVDVLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPI 814 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V D L+ E I + + +V + + E LE+ R H +D Sbjct: 815 RTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVLERLEKLVPEARFGVGHGQMD 874 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ EFDVLV ++ G+D+P V+ + I A + G + L Q GR Sbjct: 875 EDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQ----LYQLRGR 930 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + + R + + E G G + D+ G Sbjct: 931 VGRSHHR---AYAYVL-YDANVPLSAEAVARLEAIQEATELG---AGFQIALRDLEIRGA 983 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 N+ + G V +D+ + L + E++ Sbjct: 984 GNVLGPEQSG--------HVAAVGLDLYTRMLATAVEEIKQ 1016 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 88/526 (16%), Positives = 170/526 (32%), Gaps = 69/526 (13%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + +L+ L G L ++ S + +A + + RP +++ + A + + Sbjct: 14 PELEKLKRELSCG--SDATLSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLA 71 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + +AV + + D + DA+ ++ I R A + V+V Sbjct: 72 AWLGNDAVLRYPNRKD-------------YPWSDATPDDAIIGARCRAIAKLSAGEKVIV 118 Query: 139 VASVSAIYGLGDP---DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VAS A+ P +L VG + + L + YA + GTF + Sbjct: 119 VASAHALMRRVPPVGSGYFLPATFT--VGDDVPFEDVASLLVGMGYADTGEVDAPGTFHI 176 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 G+ +DIFPA++ +R+E F +E++R+ TGQ + I T+ P +E Sbjct: 177 HGDTVDIFPAQA-TSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEA 235 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I +A E + DLE++ +E Y L G Sbjct: 236 IRRAEEALYTRAQE-----------------NSAIAADLELIQRGAQAPALERYLPVLYG 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + +++ ++ L+V+ E + + LD Sbjct: 279 G-----TASPLEHISSETLVVLAEPRSLFDDCQRAFDEISSSA-------AASKVKLDGL 326 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + + + Q + S+ S VV + A L Sbjct: 327 YTDPKAMDFGSQQRLSFSSLLRTGAAVTSELSVVQPSI---------------AGSDTKL 371 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME--IIRDLR 493 L +RQ + V+ + E L + E + + L+ Sbjct: 372 LGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENEPDQNGVYVPLK 431 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 G V + G+ +P +L + +D + + I Sbjct: 432 RGR--VTFTDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKRI 475 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 104/326 (31%), Gaps = 29/326 (8%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + + V+ +H + + + +G + L N + + Sbjct: 703 LEGFADGTIDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVD----- 757 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAA 444 + +SATP ++ + V D + T ++V D + + IR Sbjct: 758 ---VLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELE 814 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V + ++ +EE R H + E ++ + E DVLV Sbjct: 815 REGQVYYVSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVA 874 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D + + I D+ + G + L Q GR R G+ Y + P+ Sbjct: 875 TTIIESGIDNSHTNTLIIEDSQRLGLAQ----LYQLKGRVGR---GRQQAYAYFMFPAEL 927 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 E R E G+ + D+ G + S + Sbjct: 928 PLTEEATERLTAI----NEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLS-------S 976 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQ 648 V D+ + L + + E G + Q Sbjct: 977 VGFDLFTQMLGEAVAEARGESAELEQ 1002 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 72/505 (14%), Positives = 162/505 (32%), Gaps = 68/505 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS + A+ Q +V+A + Y +K + + + F + Sbjct: 24 LYGSADALALIE-FANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDN-------- 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 + S + I RL + + +V+ ++ +++ P + K Sbjct: 75 -----WEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSHLCPLEFSKKYS 129 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L++ + I+ +L ++ Y + G F +R +ID++P + A R+ LF+ Sbjct: 130 LNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT-KTAYRINLFN 188 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++VE + F+ T + + IP T+ P + T I K+ Sbjct: 189 QKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKK------------- 235 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL-VV 337 + F ++E GIE Y TLFDYL + ++ Sbjct: 236 -------IFNDNGFIYTEVSEGRLPGGIEFYLPLF-----FHTTNTLFDYLADNTIIATS 283 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 E + + R + ++ + Q I ++ Sbjct: 284 KEFSNLVDKTYNEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSKLE 343 Query: 398 NYELEKS-GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N + + + V +P+ ++ + + N+++L+ + Sbjct: 344 NKKQHFNFNSSLPPPVRIELQTNNPL-------SKFSTFVKRFTNK--QNKKILIVCESL 394 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR--LGEFDVLVGINLLREGLDMPE 514 L++ L H + + + ++ + +L+ GL + Sbjct: 395 DRQNVLSDLLINHNLNTYSV----------KSWHEFTTSSKSLNI-IHEDLIH-GLLIHN 442 Query: 515 VSLVAILDADKEGFLRSERSLIQTI 539 + I + D G ++ T Sbjct: 443 I--AIITEEDLFGQEVVQQQRRHTK 465 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 29/330 (8%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 LS + + + L + ++ +H I + +G + AL Sbjct: 685 LSRFQTPKEQKIIIEQLKQGTIDIIIGTHKIIQNNIKYKNLSLIIIDEEHRFGVKQKEAL 744 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQ 431 + ++ATP L + G + + + T I+ Sbjct: 745 KKL--------RGQSDILTMTATPIPRTLNMALGSLRELSIIATPPAKRSTIQTFVQEWH 796 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEII 489 D++ I + +V + +++ E L++ + +R H I T E +I+ Sbjct: 797 NDNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQIIPKLQIRIAHGKIPTRELEQIM 856 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D F +LV ++ G+D+P + + I +A G + L Q GR R+ + Sbjct: 857 SDFYHARFHILVCTTIIETGIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHHR- 911 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y I S ++ +T + R K E G G D+ G + Sbjct: 912 --AYAYLIVKSHL-SLSKTAKDRLDVIKSLTELG---SGFMLANHDLEIRGAGDLLGDNQ 965 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + ++ L++ I + Sbjct: 966 SG-------QISEIGFNLYHDLLKRTIDAV 988 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 91/529 (17%), Positives = 178/529 (33%), Gaps = 56/529 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 I R+ L+ G L ++ S + F +A RP +++ + A + Sbjct: 12 TSREIHRIWNELDQGK--DCTLNISQSARPFIVAACACAQARPILLVVSGEDAADRAARI 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + + V + D D S + + R A + + + Sbjct: 70 LAGWLGPDVVFRYPDRAD-------------LPWSDKSASAEVCGTRAEALFHLAQPQRC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQY---ARNDQAFQRG 191 VVVAS A+ P + + + +G +D A+ R+L Y + + G Sbjct: 117 VVVASARALLRRLPPKTSSFAQQQ-KICIGDELDIYALARQLVLWGYVSTTVVKEVREPG 175 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F V G+ +D+F + +R+ F +EV+ + P TGQ +S+ + Y Sbjct: 176 YFCVHGDSVDVFSP-CEQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELEL 234 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 E I A ++ ++ T+ L+ + E Y + ++ Y Sbjct: 235 SPETIQCAKNKLYDKAQEDLD-----------------TERVLDQIEESVYTNELDAYLP 277 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +L ++ DY+ L+V+ E Y + + Sbjct: 278 YLY-----PSTASVIDYMHPSALVVLAEPRALFDDCQRAYDEL-------MHASTEKRVS 325 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 LD E + Q + +S + + S V +Q I +R + Sbjct: 326 LDGLYTSPVELDFGKQQRLSLS-SLARQGMRASNHVVTEQCDIAGSASKMIGRIRELLAN 384 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVERMEIIR 490 ++ + R A L T ED +E+ EH + H S+ + + + Sbjct: 385 NSAVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRAPEHESEHNQDLEAQNLP 444 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 R V+ + + G+ +P L +D L +++ Q I Sbjct: 445 LPRN---KVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQKI 490 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 65/404 (16%), Positives = 121/404 (29%), Gaps = 35/404 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ + Q + E Sbjct: 642 TPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILAQQHFETFYER------F 695 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + E R LS + + V+ +H + + Sbjct: 696 TPFEVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLIIIDEEQR 755 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + L N + + + +SATP ++ + V D + + Sbjct: 756 FGVQHKEQLKNIREQVD--------VLTLSATPIPRTMQMAMSGVRDMSLILSAPAGRKP 807 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDI 480 V DL+S+ IR A +V + + +D E + R H + Sbjct: 808 VRVHVGEWDSDLISDAIRLELARKGQVYYVSNRVKTIDDALERVHACAPEARVGVAHGQM 867 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + E++ E DVLV ++ G+D P + + I D+ + G + L Q G Sbjct: 868 SPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQ----LYQLKG 923 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R G+ Y + P + + E RRR + EH G+ + D+ G Sbjct: 924 RVGR---GRVQAYAYFMFP-PTEPLTEEARRRLEAI---YEHQELGSGMRIAMKDLEIRG 976 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + S V D+ + L + E +G Sbjct: 977 AGSLMGAEQHGNLS-------GVGFDLFTQMLSDAVREAKGETQ 1013 >UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09E47_STIAU Length = 494 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 142/392 (36%), Gaps = 48/392 (12%) Query: 1 MSKPFK-------LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI 53 M PF L A P+GD RL E L+ G +T G+ G+ + +A + Sbjct: 38 MDTPFSQTAGSEALRGAVPPTGD---PFARLLERLQPGHRART-QGLHGAARGHVLARLS 93 Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 L+ P + +A ++ A L G++ F N +P+ + + Sbjct: 94 RTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPR-------VLRLPADEVLPYDEL 146 Query: 114 SVNEHIEQMRLSATKAMLER-RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRA 171 S HI RL + + R +V S+ A+ P + LT G ID+ Sbjct: 147 SPEPHIVSERLGTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDT 206 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 + R+L + Y + GTF VRG ++D+F + +R+E F + +E + LF+P Sbjct: 207 LARQLVLMGYQSSPLVEDPGTFSVRGGILDVFSPLYER-PVRLEFFGDTIESIRLFEPDN 265 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V ++ ++ P + + +A + ++ + Sbjct: 266 QRTVDSLKEVSLVPARELLLTDQTRAKAEATARAVADHINLPTIK-------------LR 312 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDES-------H 341 L+ + E G+E G T+FDYL + + D+ Sbjct: 313 ERLDALREGLPGFGLEGLLPGFFEGGL----ATVFDYLRLWAREPVFYFDDPVGLERAAT 368 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 ++ ++ AR++ + + Sbjct: 369 DLWEELERSHQEADARQDLTLPPSEHFLTREQ 400 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 105/676 (15%), Positives = 207/676 (30%), Gaps = 83/676 (12%) Query: 3 KPFKLNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL 56 +P + +P DQ A+R L E + +++ TG F +A++ Sbjct: 9 RPTTAEAPLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATG-LFPFLVADLARRA 67 Query: 57 --QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++P +++ L + + +P+ +T + S Sbjct: 68 TAEQPLVIVTATTRATEDLRAALSALVGTEHL-------------VELPAWETLPHERLS 114 Query: 115 VNEHIEQMRLSATKAMLERRD----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + VV+ V ++ L + VG Sbjct: 115 PRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAAVGDTYPLE 174 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + R L YAR D +RG F VRG ++D+FP ++ +RV+LF +E++ + F Sbjct: 175 DLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVA 233 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + PR P + + + EEL Sbjct: 234 DQRSLDPAPRGLDAPPCREILLTPAVRERARARAEELPG--------------------V 273 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L + + G+E+ S L + D LPA +V + + + Sbjct: 274 RDLLLRIADGIAADGMESLSPVLVDG-----MEQVADVLPAGARFLVIDPEKARARADEL 328 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + F L+ + + + + Sbjct: 329 VATTDEFLAAAWSSAAAGGGLPIDV--GAASFVPLSEAKGHAREGGRPW-FTLAAFGLDT 385 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 V T + + D ++ +R A VL T + A + E L G Sbjct: 386 DVDLTTSST----THPGYSGKPGDAAKDLERRRAEGWSVLSTMVGPGGARHVAENLRAEG 441 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + E+ + GE +V + EGL ++ L+ + D G Sbjct: 442 LPAVFS---------AELDAPVAPGEA--VVTVGPFAEGLVDEDLQLILAAERDLTGKSG 490 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE-HGITPQGL 589 + R + + RNV + P + ++ E G Sbjct: 491 ARRGEERKMPSRRRNV----------VDPLQLRPGDHVVHAHHGVGRFVEMTRRAVGSGA 540 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + + L + +K G P + D V + + + ++ + G ++ Sbjct: 541 KRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGE--EPSVNRMGGADWAKTKS 598 Query: 650 LEFEEAAQIRDQLHQL 665 + +I D+L +L Sbjct: 599 KARKAIREIADELVRL 614 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/437 (15%), Positives = 132/437 (30%), Gaps = 40/437 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q E G+ Sbjct: 663 VPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFAERY--TGFP 720 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + SRF + L D + +V +H + + Sbjct: 721 VTVRGLSRFQNPADSEATVEGLRD----GSVDIVIGTHRLLTGNVRFKDLGLLIVDEEQR 776 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L + +SATP LE + + + + T + Sbjct: 777 FGVEHKETLKAL--------RTNVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHP 828 Query: 424 EVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 + V Q D + + IR+ +V + + +L E RV+ H + Sbjct: 829 VLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKM 888 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + ++ D +FDVLV ++ GLD+ + + + +AD+ G + L Q G Sbjct: 889 NEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVENADRFGLSQ----LHQLRG 944 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + + K + E R N + G G+ + D+ G Sbjct: 945 RVGRSSER---AYAYFL-YNATKPLTELAHDRLTTLATNTDLG---AGMQVAMKDLEIRG 997 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AA 656 N+ + G V D+ + + + + G + + E A Sbjct: 998 AGNLLGGEQSG--------HIAGVGFDLYVRMVGEAVAAFRGEGRAPEKEIRVELPLDAH 1049 Query: 657 QIRDQLHQLRELFIAAS 673 D + R A S Sbjct: 1050 VPHDYIGSERLRLEAYS 1066 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 112/683 (16%), Positives = 207/683 (30%), Gaps = 79/683 (11%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA---------D 55 L +A + +R E + +G + +A V D Sbjct: 75 NGLRAALREDPSIAR-VRAHAEREHAKRSEDLQIGAPNGLRAPLLAEVAEGLAAAQANGD 133 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 + + + L ++ + PE+AV F PS +T + S Sbjct: 134 HAGVVLAVTATSRESEDLVAALRAYLPEDAVADF-------------PSWETLPHELLSP 180 Query: 116 NEHIEQMRLSATKAM------LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ 169 RLS + + +VVA V A+ L + L++G Sbjct: 181 RSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIVQGLADLEPVELSIGQRAPF 240 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++RRLA+ YAR D RG F VRG +ID+FP +D +R+E F +E+E + F Sbjct: 241 DQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWFAV 299 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + +++I +PK + P ++ +K + + Sbjct: 300 ADQRTLTSISGTIEHPKALFAPPCRELLIT--------------PEVQSKAAKLKDSFPA 345 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 LE + G+E+ + L P + VV E + Sbjct: 346 AAAMLEKIAGGIAVEGMESLTPVLVDSMVPVVAE-----FPPGSIAVVLEPERVRGRAHD 400 Query: 350 MYRGDRARKE-TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-----PGNYELEK 403 + + E + LD A QT + L Sbjct: 401 LEATNEEFLEAAWSTASDGGAAPLDVSQTLASASFASLAQTRGAALRAGVSWWSVSALGI 460 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMAEDL 462 + V +P VA ++ + S +R RV+V T A+ L Sbjct: 461 DDETAPELDVLSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGPAQRL 520 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E + + S + + I V + G + + + + + Sbjct: 521 AELFHDADIPTARVDSLDEQPQLGIIE-----------VTTAAVGHGFVLDGLKIGLLTE 569 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 AD G + + R + A+ P + + ++ E Sbjct: 570 ADLLGRSSASGT---KDMRKMPSKRRNAV------DPLQLRGGDFVVHEQHGIGRFLELI 620 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G + + L L +K A G P + D + + + ++ G Sbjct: 621 QRKVAGTD-GSREYLVLEYAPSKRGAPGDRLFVPTDQLDQITAYVGGD--APALSKMGGS 677 Query: 643 MMQHAQNLEFEEAAQIRDQLHQL 665 +N + +I +L +L Sbjct: 678 DWASTKNKARKAVKEIAGELIRL 700 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 72/467 (15%), Positives = 141/467 (30%), Gaps = 48/467 (10%) Query: 226 LFDPLT--GQIVSTIPRFTIYPKTHYVTP----RERIVQAMEEIKEELAARRKVLLENNK 279 F T + + + P M+ + K + Sbjct: 711 SFSADTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRA 770 Query: 280 LLEEQRLTQRTQFDL--EMMNELGYCSGIENYSRF------LSGRGPGEPPPTLFDYLPA 331 + + ++ + ++ + Y + E +S F LS G+ + + Sbjct: 771 AFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRFQSGKEAKETAEGVAN 830 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + VV +H + + + +G L + + Sbjct: 831 GSIDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEQLKKMRNNVD--------VLA 882 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVL 450 +SATP LE S + + T + + V D + IR+ +V Sbjct: 883 MSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRRELMREGQVF 942 Query: 451 VTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E + ++++ R H + +II D FDVLV ++ Sbjct: 943 FVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIET 1002 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD+ + + + ADK G + + R G+ Y + P+ K +GE Sbjct: 1003 GLDISNANTLIVDGADKYGLSQLHQL-------RGRVGRGRERAYAYFLYPAE-KPLGEV 1054 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDM 627 R K H G+ + D+ G N+ + G V D+ Sbjct: 1055 ALERLKAV---AAHNELGAGMQLALKDLEIRGAGNLLGGEQSG--------HIAGVGFDL 1103 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELFIA 671 + + + + + G A +++ E A D + R A Sbjct: 1104 YIRLVGEAVADYRGETEDKAADMKIELPVNAHLPHDYVPGERLRLEA 1150 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 211/648 (32%), Gaps = 93/648 (14%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 + L E L+ H L G+ K ++++ L++ +V+ A + Sbjct: 47 LQTLPLSKDLREKLQK-RGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWT 105 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER- 133 +++ +Q + P+S+ + + ++ +++ Sbjct: 106 AQLELMG--------------WQTVNFYPTSEASPYDPGRLESEMVWGQMQVLAELIQGH 151 Query: 134 --RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 + +VA+ A+ P + L L G +D +++ LA L Y R Sbjct: 152 QVKGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETE 211 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G + RG+++DIFP S ++ +R+E F +E+E++ FDP + + + + + P + Sbjct: 212 GQWSRRGDIVDIFPV-SAELPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTS--- 267 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + I+ L A+ L + E ++L G E Sbjct: 268 --------FDQVIEPALNAQAIDLSAWGEDAETEQLF-----------------GKEGLQ 302 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 RFL P L DYLP + + V+DE + +LP+ Sbjct: 303 RFL--GLAFTEPACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDW-----SALQLPN 355 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + L Y++ + + + GD +D RP + Sbjct: 356 LPQLHRNFSALGDRLKTDFQYITLSEIHE----ANGDSLDISARPIPTM---------PH 402 Query: 431 QVDDLLSEIRQRAAINE----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVE 484 Q L +R + I T L L+EH V+++ + D +E Sbjct: 403 QFAKLAEILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIE 462 Query: 485 RMEIIRDLRLGEFDVLVGINLLR-EGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRA 542 + +I R ++ L EG +P LV + D + G + ++ R Sbjct: 463 KSQIQRTAVTLKY-----SGLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRR- 516 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ++ + + K+ + + + ++ Sbjct: 517 ---------ATSKQVDINKLSPGDYVVHKSHGIGKFLKLDALANREYL--MIQYADGILR 565 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + R M K + +++ + + A +L Sbjct: 566 VPADSLDSLSRFRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDL 613 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 103/293 (35%), Gaps = 26/293 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQR 442 + ++ATP L S + + + T I+ + + + IR Sbjct: 792 KTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNE 851 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V E+L L + R H ++ E + GE D+L Sbjct: 852 LDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADIL 911 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P V+ + + DA K G + L Q GR R+ + + P+ Sbjct: 912 VCTTIIEAGLDIPRVNTIIVEDAQKFGLAQ----LYQLRGRVGRSG---IQAHAWLLYPN 964 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVE 619 K + E R R + + + G G D+ G N+ + G + Sbjct: 965 -QKQLTEKARLRLRALQEFSQLG---SGYQLATRDMEIRGVGNLLGAEQSG--------Q 1012 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELF 669 + + + + LQ I E++G + ++ + + A D + L E Sbjct: 1013 MEAIGYEFYMEMLQDAIKEIQGQEIPKVEDTQIDLPLTAFIPSDYIPDLEEKM 1065 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 8/145 (5%) Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT-- 452 P +L+ D + +D ++ + + + I + + + Sbjct: 645 QPTPDQLKAVQDVKRD--LEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLA 702 Query: 453 ---TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLRE 508 LT++ L E + + L+ E+ EI+ L+ GE D++VG +L Sbjct: 703 PTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGT 762 Query: 509 GLDMPEVSLVAILDADKEGFLRSER 533 + ++ L+ I + + G + E+ Sbjct: 763 SVKFKDLGLLVIDEEQRFGVNQKEK 787 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 92/642 (14%), Positives = 187/642 (29%), Gaps = 59/642 (9%) Query: 33 AHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAPNKTLAAQLYGEMKEFF-PENAVEYFV 90 + + G GS I ++A R + L P+ A L + +A + Sbjct: 84 GTRHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEA 143 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD-VVVVASVSAIYGLG 149 + + ++ D + + Q RL+ + V+V ++A+ Sbjct: 144 AGSTTFGRVLLYLPNEASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKV 203 Query: 150 -DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 D + + +D+ A+ RL Y R+ GTF VRG ++D++ A S Sbjct: 204 VSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVW-APSA 262 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R++ + + V + F+P + V+ + I P + + +A + ++ Sbjct: 263 ELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACD 322 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + + ++ + G E Y Y Sbjct: 323 VIDFP-------------STKARALVDDVASGRAFFGAEGYLPAFIDLASFTS------Y 363 Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 LP D L+++++ + + R R E F L S ++ A A Sbjct: 364 LPDDALILLEDPSSVTAAVRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGARAV 423 Query: 388 QTIYVSATPGN-------YELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLL 436 ++ + G E DV R L+ I+ R +D L+ Sbjct: 424 LALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDPLV 483 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG- 495 + RVL+ + E L L RV+ D G Sbjct: 484 RRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDP--------AFFDGS 535 Query: 496 -----EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 LV L G+ P L + + + G R+ + Sbjct: 536 SSASPRDTALVVTGSLARGVIAPAEGLALVTEEEIFGARAHRRAARAAASSTKPSQ---- 591 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 +Y ++ + G + Sbjct: 592 ---AFLEDLRNLGVGDHVVHVEHGIGRYLGLVHKQVGSTTVDLIAVEYAGGDKLYLPVYR 648 Query: 611 RGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNL 650 + + + P + + + +E + + A L Sbjct: 649 LNQIQKFSGGEGTPKLDRLGGQTFAKTKARVEKSVRKMADEL 690 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/471 (15%), Positives = 139/471 (29%), Gaps = 54/471 (11%) Query: 202 IFPAESDDIALRVEL-FDEEVERLSLF-----DPLTGQIVSTIPRFTIYPKTHYVTPRER 255 + P + D A FDE ++ D +G+ P V Sbjct: 705 VPPPDDDYRAFEATFPFDETPDQARAITEVTADLESGR-----------PMDRLVCGDVG 753 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + I+ A Q ++ + R +S Sbjct: 754 FGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHY------LSFRSRMASYPIEVRVMSR 807 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + + L + VV +H + + R + +G + Sbjct: 808 FQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTHKERIKAL 867 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + +SATP L+ + + D + T +D V + + Sbjct: 868 --------KTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAV 919 Query: 436 LSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDL 492 L E + + +V + L E R H + + + D Sbjct: 920 LREAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDF 979 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G +DVL ++ GLD+P + + I AD G + L Q GR R+ Sbjct: 980 VEGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQ----LYQLRGRVGRSKER---A 1032 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 Y I P A+ + R R + + + E G G +D+ G + Sbjct: 1033 YCYLIVPPPN-AMTDEARARIEALERHTELG---SGFQIASLDLELRGSGDLLGAEQSGT 1088 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLM--MQHAQNLEFEEAAQIRDQ 661 ++ V ++ + L + +HEL G L F+ A + ++ Sbjct: 1089 VAQ-------VGFELFCQMLDEAVHELRGEPVVHDVDTELSFDADALLPEE 1132 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 93/659 (14%), Positives = 213/659 (32%), Gaps = 89/659 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 Q A + L + G + + + + + + LQ+ +V+ PN+ Sbjct: 2 KKIDEILKQNPAFKTLLK----GEGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A LY ++ +++ + P +++ + + + + R+ A Sbjct: 56 EANLLYQQISLINEKDS--------------LFFPVDESYRIEALASSPELLGQRIDALY 101 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + +++ A+ L+L L+L GM ID + + L + Y + Sbjct: 102 QLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q F RG VID+F + D+ LR+E FD+E++ + ++ + + + + TI P + Sbjct: 162 DQPFYFSKRGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + + +I + R +E L ++ + D E + + Sbjct: 221 DILYDEQEVPAVLSKIND----LRDRQIEELDELYQEDYLSKVSIDQENLRNHDTSFTMY 276 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y +L DYL L++ +H + + L G Sbjct: 277 GYFNLF------NQTASLLDYL-DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKT 329 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + R L + A L + +++ Sbjct: 330 IKGLNLFRDLYEVIDRKSVNFKPF--AQSDKDVLFNARAIMIN----------------- 370 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++++IR + +V+V + +TE + H E Sbjct: 371 -NDDEAMIINQIRAYLKL-SKVVVALDDDHQLKLMTELFDRH--------------EMAY 414 Query: 488 IIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + ++ + L + +N + G+++ + +V I + ++ Sbjct: 415 TLIGIKDEIYPGLNIAVNKIGFGIELVDEKIVIISANELFKTRNIKKP------------ 462 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 AK + + + ++ HGI K + + Sbjct: 463 --------KYFKYKNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVA 514 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 A P+ + + S + KI++L G Q + + I D+L ++ Sbjct: 515 YAGDDTLYIPVEQFKMIRKYSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIADKLIEI 573 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 78/516 (15%), Positives = 163/516 (31%), Gaps = 74/516 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL---FDEEVERLSL 226 I +L E+ Y+ + Q G + FP++S+ +++E F E+ Sbjct: 564 DDIADKLIEI-YS--ARINQPG-YA--------FPSDSE---IQLEFERSFGYEL----- 603 Query: 227 FDPLTG-QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + + V I P + + ++ A Sbjct: 604 --TVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTT 661 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q + + + L+ + + L + ++ +H Sbjct: 662 ILSMQHYKTMIARFKDFP------VKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRI 715 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + +G + + + + ++ATP L+ Sbjct: 716 LSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTID--------VLTLTATPIPRTLQM 767 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDL 462 S + T + V + + L+ +I + A + +V ++ Sbjct: 768 SLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERELARDGQVFYLYNRTSQIANV 827 Query: 463 TEY--LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L G RV H +D E +++ EF+VLV ++ G+D+P + + + Sbjct: 828 AYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTIIV 887 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 DADK G + L Q GR R+ G Y + + K + E +R K K Sbjct: 888 EDADKFGLSQ----LYQIKGRVGRSNRG---AYAYLL-YNPTKVLNEEASKRLKAIKEFT 939 Query: 581 EHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI-HE 638 E G G + D+ G +I G D++ +M K LQ I + Sbjct: 940 ELG---SGYKIAMRDLAIRGSGDILGGTQSGF--------IDSIGFEMYMKILQDAINEK 988 Query: 639 LEGLMMQHAQNLE--------FEEAAQIRDQLHQLR 666 + ++ + ++ + + + +L Sbjct: 989 MGKEDVEAEKEIKSVNVKVDGYIPHDYVSSDIEKLE 1024 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 84/488 (17%), Positives = 168/488 (34%), Gaps = 46/488 (9%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 IR + L G + + + + +A + L RP +V+ P + A +L + Sbjct: 21 SRTIRTVASRLASGQSLVA-EELPVAARPAVLAALARILDRPLLVIVPRQAHADELADAV 79 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV 137 + E VE + + +T + + R + M E + Sbjct: 80 GQLLGEIPVEVWQAP-------------ETLPYDVFAQDRASAVERSWFLQRMTEPSPGL 126 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +A + L P + L L VG + + +L L + YA Q G+F R Sbjct: 127 FIAPARGLLQLLPPNESLRGCPLTLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRR 186 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G ++D++P +D +A+R+E F +E++ + F+P T + V + + P + P+ + Sbjct: 187 GGIVDVWPPGND-LAVRIEFFGDEIDSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQA 245 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + R +V E +L ++ G L+ Sbjct: 246 AATKLRRLDTSSLRPEVREEWERLCQQIE------------------RGELVPLPELALP 287 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 +L D P +VV + I + + +ET G Sbjct: 288 FVFPEASSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELRETSELSGELPRGLPRPYH 347 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + +L I T + + + GD+ + T ++ +A ++D L Sbjct: 348 PDDRIWTSLRVHPILWLGT--VEQGDSANGDIPSDLGFTT-------DIPAIAGRLDTLP 398 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + A + V + T A+ L L E + T+ R + + E Sbjct: 399 AVLAPFLAEDYAVTLVTE---QADRLAHLLSESSQYAEAASIAASTIARGRLPGGWKHRE 455 Query: 497 FDVLVGIN 504 +L+ + Sbjct: 456 ARLLLLTD 463 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 124/400 (31%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E + Y Sbjct: 634 PMDRLLCGDVGFGKTEVALRAAFKAVNNGYQVAILVPTTVLALQHYNTFRERLA--SYPV 691 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SR S R + + L A + +V +H + + R + + Sbjct: 692 RIEMLSRLRSKREQRA----IIEGLRAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRF 747 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + ++ATP L + V D V T +D Sbjct: 748 GVAHKEHFKRL--------RTNVDVLTMTATPIPRTLYLALSGVRDLSVIATPPVDRTPV 799 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V D ++ E I + A +V V D + L R H + Sbjct: 800 RTFVTPARDSVIREAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAVAHGQMP 859 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E II D ++DVL+ ++ G+D+P V+ + I A + G + L Q GR Sbjct: 860 EQELERIIVDFIERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGLTQ----LYQLRGR 915 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + + + R R + + E G GL + D+ G Sbjct: 916 VGRSHQR---AYAYLLYDDR-RPLSAEARARLEAIQEATELG---AGLQIALRDLEIRGA 968 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 NI + G V +++ + L + + EL Sbjct: 969 GNILGPEQSG--------HIAAVGLELYTQLLARAVQELR 1000 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 102/651 (15%), Positives = 194/651 (29%), Gaps = 94/651 (14%) Query: 53 IADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 A+ P ++ + A +L + + P + F PS +T + Sbjct: 70 AAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANF-------------PSWETLPHE 116 Query: 112 DASVNEHIEQMRLSATKAMLERRD-----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S RLS + + VVVA V ++ L + L G Sbjct: 117 RLSPRSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQD 176 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 D + ++ LA Y+R D +RG F VRG +ID+FP ++D +R E F +E++ + Sbjct: 177 YDFQQLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRW 235 Query: 227 FDPLTGQIV--STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F + + + P + P + + ++KE+L Sbjct: 236 FAVADQRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGG-------------- 281 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + LE + Y G+E+ + L + + LPA + VV E Sbjct: 282 ------REMLERIAGGQYVEGMESLAPLL-----ADEMLQVMSLLPAGSMTVVLEPEKVR 330 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + A + + + A S + + Sbjct: 331 ARAHDLVATNEEFLMAAWDSASGGSEAPLDLNAALDTDDDAARTLSSGSFHTIAEVRDLA 390 Query: 405 GGDVV--------------------DQVVRPTGLLD--------PIIEVRPVATQVDDLL 436 V D L D E + V +L Sbjct: 391 LERSVGWWSVTGLNVNAVTTSQMDADTSDEEVHLADTDADTLTVTAREPTRFSGDVPAVL 450 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVERMEIIRDLRL 494 S + +RA + R+++ T + L+E L S D +E Sbjct: 451 SFLGERAREDWRIVLVTDGPGPLQRLSELLHGADVPAARYDSVDDAPQPGLVE------- 503 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 + G + + + +AD G + + + R N L Sbjct: 504 ------LTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERKLPQRRKRNQVDPL-- 555 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + +T G K V + L L +K Sbjct: 556 ALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPRDRLF 615 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P + D V + + + ++ G + + +I ++L +L Sbjct: 616 VPTDQLDQVSTYVGGE--APSLSKMGGADWNKTKRSAKKAVKEIANELIRL 664 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 126/434 (29%), Gaps = 40/434 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P ++ + ++ A + + Q ++ E S Sbjct: 714 PMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAER------FS 767 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G LS + + L + + VV +H + + + + Sbjct: 768 GFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRF 827 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + +SATP LE S + + T + Sbjct: 828 GVEHKEKL--------KAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPV 879 Query: 425 VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + V + + + IR+ +V E + L E R H + Sbjct: 880 LTYVGPYTNKQVSAAIRRELMREGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMT 939 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +II D +FDVLV ++ GLD+ + + + AD+ G + + Sbjct: 940 ESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDHADRYGLSQLHQL------- 992 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ Y + P+ ++ K H G+ + D+ G Sbjct: 993 RGRVGRGRERAYAYFLYPAEKPL----SETALERLKAVAAHNELGSGMQLAMKDLEIRGA 1048 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQ 657 N+ + G V DM + + + + E G ++ E A Sbjct: 1049 GNLLGGEQSG--------HIAGVGFDMYLRLVGEAVAEYRGDQDTGPAEMKIELPVNAHL 1100 Query: 658 IRDQLHQLRELFIA 671 D + R A Sbjct: 1101 PHDYVPGERLRLEA 1114 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 94/681 (13%), Positives = 204/681 (29%), Gaps = 103/681 (15%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPN 66 S + A++ L LE+G +L G++ S + F A + L P ++++ + Sbjct: 3 TSKLFAKISETPAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDS 61 Query: 67 KTLAAQLYGEMKEFF-------PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ + + P+ + + + + Sbjct: 62 LKTQESFQQDVETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV 121 Query: 120 EQMRLSATKAMLERRDVV------VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAI 172 RL A+ + ++A+V+A+ + + L G ++ + Sbjct: 122 ISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDL 181 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L E Y Q Q+G +RG ++D++P S +R+E F +E+E L FDP+T Sbjct: 182 IEWLEEQGYEPEAQVTQKGEIALRGGILDVYPMTS-PWPVRLEFFGDELESLRYFDPITQ 240 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 I T+ P + ++ + + L L E +R+ + T Sbjct: 241 ISREQIATVTLPPGGEFGILKQLAARDQQASLATLLDYL-PTGTLFILSEPERIEEHT-- 297 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 E YS + P P + D ++ E + Q+ + Sbjct: 298 --------------EQYSTQVPNEDPFHIPWS-------DFQELLSEKGMKSLQLSEIVM 336 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + ++ + A D RP +L ++ + Sbjct: 337 DGESEGMDVLSESEAV--AEDERPFGESTENSLPFSSL--------------------EA 374 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 RP G P ++ Q + +++ + + V + + E +++G Sbjct: 375 FRPLGARAPEPQIA--EAQRREFFAQLHRWSRQGYDVHLFCNNDGERQRFQEVWKDYGFG 432 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 D + + + L G E +V + DA+ G + + Sbjct: 433 -----------------EDF-----GLKMHLGALGRGFLNEEAKVVVVTDAEIFGRYKVQ 470 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP----QG 588 R A + I + + + R + + G Sbjct: 471 RPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQHGIGRYQGLKVLPVTLGRKGVDPNAT 530 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK------------ALQQKI 636 + L + + + P+ E V + + Sbjct: 531 PADSGQECLVIEYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKARPQLNTIGGTRWAKAK 590 Query: 637 HELEGLMMQHAQNLEFEEAAQ 657 + E + A L +AA+ Sbjct: 591 AQAERAVRDVASELLAIQAAR 611 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 127/410 (30%), Gaps = 35/410 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + Q E + + Y Sbjct: 657 PMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTFKERVAD--YPM 714 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF S + + LPA + +V +H I + + Sbjct: 715 RVELLSRFRSPKNR----KRVISELPAGAVDIVIGTHRLIQSDINFKDLGLVIIDEEQRF 770 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + +SATP L + D T D + Sbjct: 771 GVLHKEKFKQI--------RKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQDRLPV 822 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA + L+ E I++ +V + + + L R + H + Sbjct: 823 ETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMK 882 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ GE DVL+ ++ GLD+P + + I AD+ G L Q GR Sbjct: 883 PDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLS----DLYQLRGR 938 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + P A + + R+R K G G + D+ G Sbjct: 939 VGRYKHQ---AYAYLLLPRHAGLLAD-ARKRISALKQYSTLG---SGFKIAMRDLEIRGA 991 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + V D+ + L+Q + L+G ++ ++ Sbjct: 992 GNMLGPEQSG-------QITAVGFDLYCQLLKQSVAALKGEKVKPRVEVQ 1034 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 87/512 (16%), Positives = 165/512 (32%), Gaps = 61/512 (11%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + + L+ G + + GS ++ +++ N AQL E Sbjct: 19 QQQISELKLKQLKAGEKR-WIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESE 77 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P + S ++ I RL+ M + Sbjct: 78 LEFY---------------GVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNM--PQTG 120 Query: 137 VVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V++ S S + P + L + VG +D RL + Y D + G F V Sbjct: 121 VLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAV 180 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+ A + +R++LFD+E++ L FDP T + + +F I P + +E Sbjct: 181 RGSIMDIY-ASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPL-KEG 238 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 E E + + + G+E Y Sbjct: 239 RSIFRERYAEAFPTANPKK----------------NPIYQDVLDGIASPGVEFYLPLFFE 282 Query: 316 RGPGEPPPTLFDYLPADGLLVVDES-HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 +G E YLP + +++ +++ ++ + ++ P L Sbjct: 283 KGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRYESRRHNIDQPILSPEHLFL 342 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 P E P+ S + + G + V +P L V P + Sbjct: 343 MPNMVLEQLKQFPRIHVSS-----EIIAERVGGINLPVSQPVKL-----AVDPKKEHPFE 392 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++++ N VL+ + E L + L DI VE + Sbjct: 393 VVTKYINEV--NHPVLLVAESAGRRESLKDALRPSL-------GDIPNVEGFDA---FVK 440 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 ++ + + L GL + L I + Sbjct: 441 QQYAIAITNAPLDRGLVLSS-QLAVISENQLY 471 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 21/276 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 752 EHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFV 811 Query: 429 ATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 DD + I + +V E E + R H + E Sbjct: 812 QEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMREREL 871 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++++ E++VLV ++ G+D+P + + + ADK G + L Q GR R+ Sbjct: 872 EQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQ----LHQLRGRVGRS 927 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + PS+ K + +R + G G D+ G Sbjct: 928 HHQ---AYAYLLVPSI-KHLKGDAEKRLDAIQRASTLG---AGFMLATEDLEIRGAGELL 980 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + + + L++ ++ Sbjct: 981 GEQQSGS-------MQAIGYSLYMEMLEKATKAIQK 1009 >UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Streptococcus suis 98HAH33 RepID=A4VYI1_STRS2 Length = 320 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 138/328 (42%), Gaps = 33/328 (10%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + + I + + GL Q LLG++G+ K+ +A L M++ + A +L Sbjct: 6 LLHKNKQINQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKL 64 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ V F + D+ I + ++ Q R+ + + + Sbjct: 65 VADLTAIIGSENVYNFFT-------------DDSPIAEFVFASKERTQSRIDSLNFLTDS 111 Query: 134 -RDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 ++VAS V+ L P+ Y + L VG I+ +++ L + Y + + +G Sbjct: 112 TSSGILVASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQG 171 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F RG+++DIF +S+ R+E F +E++ + +FD + + + + +I P + + Sbjct: 172 EFSQRGDILDIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIIL 230 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 E +A + I+ +E+ L ++ + E++ ++ + + Sbjct: 231 SSEDYSRASQYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRK 276 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDE 339 FLS E TL DYLP L +D+ Sbjct: 277 FLSCI--YEQSWTLLDYLPKSSPLFLDD 302 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 78/494 (15%), Positives = 169/494 (34%), Gaps = 61/494 (12%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + GS + + + +++ + A ++Y E+K N+ Sbjct: 12 VVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNS---------- 61 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRDVVVVASVSAIYGLGDPDLY 154 + P+ + S + I R M + ++ +++ S+S P + Sbjct: 62 KVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASF 121 Query: 155 -LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + L G +D L E Y + F++G F +RG +IDI+P S +A R Sbjct: 122 IQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGS-KVAFR 180 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++LFD E++ + + + + + I I P V + A++++ + Sbjct: 181 IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGD---- 236 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + Y SGIE Y + +L+DYLP Sbjct: 237 -------------KALNSTIATYIQNNEYFSGIEFYLPLFYDKL-----SSLYDYLPPST 278 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ-TIYV 392 + + ++ I + R L R +E + + Q Sbjct: 279 NIHLVDN--ITNSIEAFSDEVKFRYNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIK 336 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D ++++ L +P +++ + + ++V+ + Sbjct: 337 WFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDK------------SNFDKVIFS 384 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T + AE L E+L + ++ + E +E L+ I+ +EG+ + Sbjct: 385 TDSNGRAELLLEHLNKLNLNIQSC---KNFNEAIEASTKF------CLI-ISPFQEGMII 434 Query: 513 PEVSLVAILDADKE 526 + + I +AD Sbjct: 435 DK-KIALITEADLF 447 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 127/413 (30%), Gaps = 40/413 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + Sbjct: 618 PMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVN- 676 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ + LF+ L + ++ +H I + + Sbjct: 677 -----IEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRF 731 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + + + +SATP L + + D + + + Sbjct: 732 GVAQKEKLKSLKAEID--------ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSV 783 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 V ++++ E + + ++ + E L+E R+ H + Sbjct: 784 KTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQMS 843 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ D + ++ +L+ ++ G+D+P + + I DA+ G + L Q GR Sbjct: 844 EKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGR 899 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + P+ A +I + +R + E G G D+ G Sbjct: 900 VGRSHHQ---AYAYMLIPNEA-SITKDALKRLEAISNTESLGG---GFTLANHDLEIRGA 952 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + D + +++ L + I L + L EE Sbjct: 953 GEILGEEQSGN-------IDGIGLNLYMDLLDKTIANLR-----AGKELNIEE 993 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 100/650 (15%), Positives = 202/650 (31%), Gaps = 86/650 (13%) Query: 21 IRRLEEGLEDGLAHQTLLGVTG-------SGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + ++ L+D A +TL G S + + IA R +++ N+ A L Sbjct: 4 MEKILNLLKDNQALRTLDTDNGTIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFNL 63 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 Y + E + Y P+ ++ + + + + R++A AM + Sbjct: 64 YKTLTELVNQ---------------VVYFPADESLRVESVAYSYELLGERINALYAMTQD 108 Query: 134 RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++ V + ++ P DL+ K ++ L G ID + + L + Y + Sbjct: 109 KPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFY 168 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RGEV+D++ + D +R+E FD+E+E +S +D + + + I I P T + Sbjct: 169 YSRRGEVLDVYTIQYD-HPVRIEFFDDEIEEISFYDKDSQRRTNKIESIDILPATDMMYE 227 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + Q I + K + L Q D+E + Y I Y Sbjct: 228 DDGLSQVEASI------QTLKDKMTVKDDFKDELEQTYALDIESLKAHDYNPRIYQYLGL 281 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 T+ DY D ++ + + L E G + Sbjct: 282 F------PETATIMDY-ARDYTIITASLASILASYKTYMEENYLYYHELEEIGQMIRGLK 334 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 + + E ++ + V+ + +Q+ Sbjct: 335 LINNPQTILKRQNVDFVRF-------RENDQQIMFMTQPVMISMANE------KIFISQL 381 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 DLL+ RV++ KR + L +H + Sbjct: 382 KDLLT--------YNRVMIGVDEKRQIDVLVNLFTDHAIPFT----------LTSATNKI 423 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G L L G++ E V + + +++ I+ Sbjct: 424 YDGVNLFL---GHLPCGMNFVEEKTVLLTSQELFKVQETKKKYIKYRDAT---------- 470 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + K +Y + G++K + I G +I + Sbjct: 471 --KISDYNELKVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHIAYKGNDILYVPVEQFQ 528 Query: 613 KSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 R D P + ++ + + A +L A ++R Sbjct: 529 LIRKYSSRDGKPPRIHALGSPKWAKEKARVRQKVDGLADDLINLYAERMR 578 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 65/405 (16%), Positives = 133/405 (32%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A +Q + + + Sbjct: 622 PMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPVN- 680 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L+ + + L + ++ +H + + + + Sbjct: 681 -----IALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRF 735 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + N + + ++ATP L+ S + T L+ + Sbjct: 736 GVRQKEKIKNLRKTID--------VLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPV 787 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V+ + L+ + I + + N +V ++ L+ R H +D Sbjct: 788 QTYVSEKSWALIKQVIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMD 847 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ D ++D+LV ++ G+D+P + + I +ADK G + L Q GR Sbjct: 848 KTELEDVMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENADKFGLAQ----LYQIKGR 903 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG- 600 R+ I Y + + +A+ E ++R K + G G + D+ G Sbjct: 904 VGRSAR---IAYAYLL-YTKDRAMTEEAQKRLTAIKEFTQLG---SGYKIAMRDLSIRGS 956 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +I + G D V DM K LQ I E +G + + Sbjct: 957 GDILGGEQAGF--------IDQVGFDMYMKILQDAIDEKQGKIKE 993 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 99/627 (15%), Positives = 231/627 (36%), Gaps = 72/627 (11%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 E + + G + + I N + +V++ +K A +L+ + +F E Sbjct: 15 EKKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGE----- 69 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 P D ++ S + + Q + + ++ +++ + AIY Sbjct: 70 ----------TYIYPEIDIL-KRHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIYRT 118 Query: 149 G-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 +P + + +I + R+L + Y R + G F RG ++DIF S Sbjct: 119 VKNPSDFKNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLS 178 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + +R++ FD+E++ + +FD +T + + I IYP + + E +E + +L Sbjct: 179 EK-PIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKL 237 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + K Q ++ + +E+ G S +E++S + E ++ D Sbjct: 238 DD-----KKIQKDENYQEISTYLKEKVEIYRATGDFSDLESFSNLIY-----ENTYSIAD 287 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 YL D ++ D H + +I G+ R + + +DN FE+ + L Sbjct: 288 YLNDDTIVFYDNYHKILEKIEGL-REYFLTSLQEMNRSYIYQDVIDNI--AFEKIQNLDI 344 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + Y+S + D+++ LD II++ +++ + L EIR++ N Sbjct: 345 RKYYLSTLK-----------LNDKIIEKNYNLD-IIDLAYYSSE-EYLAKEIREKITDNY 391 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V+++ T++ + + + L ++ +I ++ G+ + + L Sbjct: 392 KVIISLNTQKQKDYVEKVLFDNYFY-------------DDIYYGVKEGKIFIDLNKYHL- 437 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 +GL+ + + + + +E + + + K Y + + Sbjct: 438 KGLEDRKNKIFLLTPRELF----TEEERKKRRVKFKYTNSEKIRNYQELNIGDYIVHVSH 493 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM-- 625 E + + G+ K + I+ G +I + + Sbjct: 494 GIGLYEGIE------NVEVGGVFKDFLKIVYDGGDIIYVDINNMNYIQKYTASTDNRKPA 547 Query: 626 --DMSPKALQQKIHELEGLMMQHAQNL 650 + K Q+ + + +++L Sbjct: 548 LNKLGTKNWQKTKSRVRKEIEDISEDL 574 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 141/441 (31%), Gaps = 40/441 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 T + + M+ + E + + +T Q + + L Sbjct: 614 ATEEIKRDMEKERPMDRLL--CGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQH 671 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +N+ + + F + I I G ++ + + + G Sbjct: 672 YDNFVNRFANFPINIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFK-YKDLG 730 Query: 366 FRLPSALDNRPLKFEEFEALAPQTI---YVSATPGNYELEKSGGDVVDQVVRPTGLLD-P 421 + +K +E T+ +SATP L S + D V T + Sbjct: 731 LLIIDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQ 790 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSD 479 I+ A + + +V ++ L+ + Y H Sbjct: 791 PIQTFVTAQNKMVIKEAVMNEVNRGGQVFYVYNRVETIDEKYLELKRLLPDINIAYAHGR 850 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + E I+ D+ ++D+L+ ++ G+D+ V+ + + DAD+ G + L Q Sbjct: 851 MSQRELENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQ----LYQLR 906 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ Y + K++ E +R K G G + D+ Sbjct: 907 GRVGRSSRE---AYAYLM-YEPFKSLTENSEKRLSAIKNFTSLG---SGFKIAMQDLSIR 959 Query: 600 GQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----------LMMQHA 647 G ++ + G D+V + + L+Q+I +G + + Sbjct: 960 GAGDVLGGRQHGF--------IDSVGYTLYSQMLEQEIQAKKGILEPLLEQDRTQDVSYY 1011 Query: 648 QNLEFEEAAQIRDQLHQLREL 668 +N+ E A I+ + ++ Sbjct: 1012 ENIIKEAAPSIKKDIFEVETD 1032 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 178/443 (40%), Gaps = 39/443 (8%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 D L GV+ + K + + +RP + + + A + Y + + E + Y Sbjct: 19 ADKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILY 78 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 + P+ E S + + R++ K + ++V S++A Sbjct: 79 Y-------------PAKPITHEFIDSHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEK 125 Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 G ++ I+D + L + YAR + +G + V+G ++D+F D Sbjct: 126 GL-FWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIMG-D 183 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R+E FD+E++ + FD TG+ + I +FT+ P + + I + ++++ +L Sbjct: 184 EVPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLE 243 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + L ++ D + + + + +L D Sbjct: 244 KAITQNEDEEIDKNYRELYEKIADDTNDTTKYIFYASKQ--------------TKSLID- 288 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L D L++ D+ + ++ ++ + L E+G L ++N E A + Sbjct: 289 LYKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNHFKFAE-----AEE 343 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++L + ++ + + D I V+ + +D++++ +++ + + Sbjct: 344 RFINLDSLIYFDLSMASNNLFCKDIVEVKSSDNINYVKNINYLIDNIVTYLKE----DYK 399 Query: 449 VLVTTLTKRMAEDLTEYLEEHGE 471 V++T ++ ++L+E+L + Sbjct: 400 VIITYKNEKEKKNLSEFLSNYNI 422 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 131/434 (30%), Gaps = 38/434 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP + + + A + Q +E + + Sbjct: 627 YPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVPTTILAMQHYNTFVERFKD--FP 684 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + + + D L + +V +H + + Sbjct: 685 VKIEMLSRFKTKKEE----NRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVVDEEQR 740 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L T+ +SATP L S + D + Sbjct: 741 FGVAHKDKLKLL--------KENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREE 792 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 V D ++ + I + + +V + + AE L + G +V + + + Sbjct: 793 TETYVIEYDDYIIKDAINRELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQM 852 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + + EFDVLV ++ GL++ + + I + + G + L Q G Sbjct: 853 PERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGLSQ----LYQLRG 908 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ A Y T KA+ E +R K + G G + D+ G Sbjct: 909 RVGRSNK-NAYCYV---TYEKDKALNEVAMKRLKAINEFTKFG---SGFQIAIRDLQIRG 961 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF---EEAAQ 657 + NV ++ K LQ+ + E +G + A Sbjct: 962 SGNLLGANQSG-------HFTNVGYELYTKMLQEALKESKGEAQKEPVETTINIKINAYI 1014 Query: 658 IRDQLHQLRELFIA 671 + + ++ I Sbjct: 1015 DKKYIEDEKQRIIT 1028 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 83/502 (16%), Positives = 151/502 (30%), Gaps = 69/502 (13%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDGL-AHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 L+ + D+P R E E G A Q + + + FT+A + +R + + Sbjct: 5 DLSGLLNAALDEPGLARVRELAAEGGPTAEQVHVTAPAAARPFTVAALAQA-ERTVLAVT 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 +L + P+ +V ++ P+ +T + S RL Sbjct: 64 ATSREGEELTQSLAGLLPDGSVAFY-------------PAWETLPHERLSPRSDTVGKRL 110 Query: 125 SATKAMLERRDV---VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + + + VVVA V ++ L + L VG D + L++L Y Sbjct: 111 ALLHRLAHPQGAPLRVVVAPVRSLLQPQLKGLGDLKPVRLAVGESTDLSDLAAELSDLAY 170 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 AR D +RG F VRG ++DIFP +D+ RVE F +E+E + F + + Sbjct: 171 ARVDLVEKRGEFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSFAVADQRSLDKADTL 229 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 P + + E + E + + Sbjct: 230 FAPPCRELLLSPRVRE---------------------RAAELGQQHPGLAELCEQLAQGI 268 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY---RGDRARK 358 G+E+ + L + +P ++V + + + Sbjct: 269 PVEGMESLTPAL---LGADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSEEFLQAS 325 Query: 359 ETLVEYGFRLPSALD---NRPLKFEEFEALAPQTIYVSATPGNYELEKS------GGDVV 409 G + P LD + L A + S P + S Sbjct: 326 WAAAATGGKAPIDLDAAAFKSLSDVRQAASDHGCPWWSMGPFGVTEDLSPAQLEERKRAR 385 Query: 410 DQVVRPTGLLDPIIEVRP------------VATQVDDLLSEIRQRAAINERV-LVTTLTK 456 + + ++ + ++++ RV LV Sbjct: 386 ELAEITGEGFEELVVADETSVTVTATPAPLYHGNSVKVTGDVKRWTNDGWRVCLVFAG-H 444 Query: 457 RMAEDLTEYLEEHGERVRYLHS 478 +AE E L E G S Sbjct: 445 GLAERAVEQLAEAGVGASLADS 466 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 121/406 (29%), Gaps = 37/406 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + +Q E M++ + Sbjct: 823 TPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVPTTLLASQHLNTFTERMSQ--FP 880 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 I+ SRF + + L A + +V +H + + Sbjct: 881 VTIKQLSRFQTDAEAEQIRKGLI----AGEVDIVVGTHRLLQTETRFKDLGLVIVDEEQR 936 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L + +SATP LE + + + T + Sbjct: 937 FGVEHKEKLKAL--------RAHVDVLAMSATPIPRTLEMAITGIREMSTITTPPEERHP 988 Query: 424 EVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + V D + + IR+ + +V E L E R + H + Sbjct: 989 VLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLREIVPEARVVVAHGKM 1048 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +I++D GEFDVLV ++ G+D+P + + + AD G + + I Sbjct: 1049 GENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLGLSQ-----LHQIR 1103 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +A Y K + E R + E G G+ + D+ G Sbjct: 1104 GRVGRGRERAYAYFM---YPPEKPLTEQAHERLATVAQHTELG---AGMYVAMKDLEIRG 1157 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N+ + G V D+ + + + +G + Sbjct: 1158 AGNLLGGEQSG--------HIAGVGFDLYVRMVGDAVRTFKGAKEE 1195 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 87/634 (13%), Positives = 194/634 (30%), Gaps = 52/634 (8%) Query: 24 LEEGLEDGLAHQTLLGV-TGSGKTFTIANVIAD--LQRPTMVLAPNKTLAAQLYGEMKEF 80 LE E + G + + ++ + P +V+ + A L ++ F Sbjct: 14 LERAFETTRGKIQVTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFF 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P +P+ D N + R+ + + + Sbjct: 74 DPSRQSH-------------ILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFI 120 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 +SV A+ P + + G + + + L Y +G F VRG Sbjct: 121 SSVDALMQKTLPVKILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGG 179 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DI+P +++ +R++LF ++VE L F + I F + P + E + Sbjct: 180 IVDIYPP-TENQPVRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHER 238 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ ++ L R+ E + L L GIE + G Sbjct: 239 LLQRVRASLEGRKVDKAEAEETLRSLVLKNAF-------------PGIEFLLPYFYGELA 285 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 T D+ P L + M+ +A T + R + Sbjct: 286 -----TPADHFPGALNLWFLDPVEISRCADEMWAELKADHRTSDAHVIRPELEDIYVNFE 340 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + + Q + S + E + + + ++ Sbjct: 341 ALAYPLNSRQVYFSSLEYFDEENSDDSRVEYRTAMTQDFTNLALANAVGTEQWLQAATNK 400 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R+ V+T + + L+ E+ + SD R + + E + Sbjct: 401 LHRWRDEGYRIFVSTKNQSHIDRLSLVFEKLELKAVRTSSD---EYRWDSWLQEQDREQN 457 Query: 499 VL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 ++ + L E L + E ++ + D D G + + G K + +GD Sbjct: 458 IVHIVPRYLAESLRLEEEKIIFLRDEDFYGKKQRAKES---SGAQDFQKQAKRLSFGDLK 514 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + E + N G+ + + + ++ G+ + Sbjct: 515 PGDLVVHTKHGIGQYEGLKIMNI------SGVESEYIQVGYKDKDKLYLPVYRVGQLQKF 568 Query: 618 VEP-DNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + A ++ +++ + A +L Sbjct: 569 SGAGTSILDKLGGTAWEKTKAKVKSHVRDIAADL 602 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 102/308 (33%), Gaps = 25/308 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + T+ +SATP L + + D + T +D + V Sbjct: 765 EQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFV 824 Query: 429 AT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVER 485 + + I + +V L + + + R H ++ E Sbjct: 825 TKFDPETIRKAITAEISRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHEL 884 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + E DVLV ++ G+D+P + + I A G + L Q GR R+ Sbjct: 885 EKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQ----LYQLRGRVGRS 940 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y + P K + + ++ R K + N G G+ D+ G Sbjct: 941 KTR---AYCYLMMPRNHK-LDKEQQERLKIIQENTALG---SGIKIAQYDLELRGSGNIL 993 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAAQIRD-Q 661 + + ++V +M L + + E +G ++ L + A I D Sbjct: 994 GEEQSG-------HVNSVGYEMYMDLLNEALAEAKGESVEDMDLDPELNLKIPALIPDAY 1046 Query: 662 LHQLRELF 669 + +R Sbjct: 1047 IKDIRIRL 1054 >UniRef50_C1N749 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N749_9CHLO Length = 1800 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 173/475 (36%), Positives = 240/475 (50%), Gaps = 90/475 (18%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQT-LLGVTGSGKTFTIANVIADLQRPT--MVLA 64 + F P+GDQP AI + D T L G TG+GKTF +ANVIA +P +V+ Sbjct: 115 RAPFAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVV 174 Query: 65 PNKTLAAQLYGEMKEFFPENA-VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 PNKTLAAQ+ E++ + ++ VE FVS++ Y PE+Y S ++EK ++V++ +E +R Sbjct: 175 PNKTLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALR 232 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVG----MIIDQRAILRRLAE- 178 ATKA+LE DVVVVASVS +YG+G P Y+ L G + Q A+ RRL E Sbjct: 233 HRATKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARRLTES 292 Query: 179 LQYA-----RNDQAFQRGTFRVRGEV---------IDIFPAESDDIALRVELFDE--EVE 222 L Y R D RG + +GE I ++P ++ + +++ + V Sbjct: 293 LLYEETKDARWDGVS-RGQWAWQGEADADVDGARRIAVWPPY-EEAPVEMDVAPDGSLVG 350 Query: 223 RLS---LFDPLTGQIVSTI---------------------------------------PR 240 +D + + + R Sbjct: 351 FGRMRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPPDR 410 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 TI+P+ H++TP ER+ A E IK E+ AR L N +E RL QRT+ D+ ++ EL Sbjct: 411 VTIWPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLREL 470 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLP-------------------ADGLLVVDESH 341 G+C G E+YSR L GR G PP TL DY D LLV DESH Sbjct: 471 GWCPGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADESH 530 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +PQ+ M+ GDR+RK LV G+RLPSALDNRPL F+EF P+ + VSATP Sbjct: 531 VMLPQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATP 585 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G+LDP + V P A Q+ ++ +R+RAA E LV LTK EDL YL Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715 Query: 468 EHG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G R +LHS++ +R + ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSLIQ GRAARN G+ + D T +M +AI E +RRR KQ +N +HGIT Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835 Query: 586 PQ 587 P+ Sbjct: 836 PK 837 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 194/661 (29%), Gaps = 111/661 (16%) Query: 17 QPEAIRRLEEG-LEDGLA--HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + +A L EG ++ G L+G + A +P +++ P+ A L Sbjct: 36 EDQAFAGLVEGHVDAGEDADPSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDL 93 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 G+++ ++ + A + + +T + S R+ + Sbjct: 94 VGDLRSWYDGD-----------PNEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHP 142 Query: 134 RD--------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + ++V V ++ + L G I ++ L Y R D Sbjct: 143 QSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVD 202 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTIY 244 RG F VRG +ID+F ++ +R+E F +E++ + F + I Sbjct: 203 LVMDRGEFAVRGGIIDVFVP-TEPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWAT 261 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P +A I + LE + Sbjct: 262 PCRELQLTEGIRERAQSLIGQ---------------------IPNADDLLESIANAIPQE 300 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT---IPQIGGMYRGDRARKETL 361 G+E+ L LP D ++++ + + + A + Sbjct: 301 GMESLIPALVDDLEPVSS-----MLPRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHV 355 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 G P+ FE L + T N+EL K G VDQ + +D Sbjct: 356 AASG-----HGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTVDQSLPGHVQIDA 410 Query: 422 II--EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + ++ + +D L E+ ++ + V++T + L L E G +H D Sbjct: 411 VAPQDLHGSGEKAEDHLGELIRK---DYAVVITAAAQGTLSRLKRMLNEIG----VVHFD 463 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 R + + + D G + Sbjct: 464 ---TIRSQAQDGFIDHAS------------------KTALLTERDLTGRTSVAAGV---- 498 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + AR K+I + R + ++ G N+ + L + Sbjct: 499 -KTAR-KRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTT-----GSGKNQATREYLVI 551 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA----------LQQKIHELEGLMMQHAQN 649 +K A P + D V + + Q + + + + AQN Sbjct: 552 EYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEIPKLNKLGGSDWAQTKAKAKKHVHEIAQN 611 Query: 650 L 650 L Sbjct: 612 L 612 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 128/425 (30%), Gaps = 40/425 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + + Q Q E G+ Sbjct: 665 PMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFE--GFPV 722 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + SRF S + E L D + VV +H + + + Sbjct: 723 NVRAMSRFQSTKEINETIKGLAD----GTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRF 778 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + +SATP LE + + + T D + Sbjct: 779 GVEAKETLKAV--------RTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 830 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 + V D + + IR+ +V E+ + L++ R H + Sbjct: 831 LTYVGAYEDAQVTAAIRRELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMG 890 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +IIRD + DVL+ ++ GLD+ + + + AD+ G + + + Sbjct: 891 RKQLDQIIRDFWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQ-----LHQLRG 945 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 +A Y +K + E R N G G + + D+ G Sbjct: 946 RVGRGRDRAYAYF---LYDPSKPMTEQSHERLVTIAQNTALG---SGFDVAMKDLELRGT 999 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQ 657 + + V D+ + + + I + + + +L E A+ Sbjct: 1000 GNLLGDEQSG-------HIEGVGFDLYVRMVSEAIEDYKDPERTEPVAVTIDLPIE-ASI 1051 Query: 658 IRDQL 662 D + Sbjct: 1052 PVDYI 1056 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 80/640 (12%), Positives = 199/640 (31%), Gaps = 73/640 (11%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 ++ + ++E+ + + + GK + + + + + K Sbjct: 4 IFEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQK------ 57 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 + E+ + + + + + + + ++ E R + E Sbjct: 58 ----------SKSEWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIFEE 107 Query: 134 RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V++ S + + L L + L L Y R ++G F Sbjct: 108 GFDVLILSPQNLLEKY--SDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQF 165 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +G ++DI+P S +R+E F + ++ + FD T + + IY + Sbjct: 166 SQKGGIVDIYPIFS-KYPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSI 224 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +++I + + L + + E+ ++ L Sbjct: 225 D-FSDGIKKIVADFKKLQNKLKGDARKNLEESFKDVIDGAELKIDRL------------- 270 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + ++FD D +++DE + + L+E G+ L Sbjct: 271 -YPYYYQNFRSIFDIF-GDCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLEKGYVLTKMAG 328 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 ++ E L+ I + + + V+ + + E+ Q + Sbjct: 329 CYFKVYDILEKLSSSIILQTF----------AQSIKEIQVKDIFSFNNLREIPSYNGQKE 378 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ +I+ + + V ++ EDL LE+ + E++ D R Sbjct: 379 LLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEF---------NKADEVLTD-R 428 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G V + + +G+++ + V + + + + R + K Y Sbjct: 429 QG---VYLLPRSVEKGIEIQNLKWVCLS---FFNVEKKKGKDV-----KKRPKSKKETFY 477 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 T K R K+ IT +G+ K+ + + + Sbjct: 478 ----TIEDLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDV 533 Query: 614 SRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 + D+ +S Q++ ++ + A+++ Sbjct: 534 IEKYIGTDDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDI 573 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 135/423 (31%), Gaps = 38/423 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q ++ M + + Sbjct: 626 PMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHYMTFVQRMKD--FPI 683 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SR + L + ++ +H + + ++ Sbjct: 684 TIEVLSRL----KSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGLLIIDEEHKF 739 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + ++ATP L + + D + D Sbjct: 740 GVEHKEKIKKL--------KENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFPV 791 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GERVRYLHSDI 480 V + ++ E I + + +V + E++ L+ ++ Y H + Sbjct: 792 QTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQM 851 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D + E++ D G++DVLV ++ G+DMP V+ + + DAD+ G + L Q G Sbjct: 852 DERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ----LYQLRG 907 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y T K + E +R K E G G + D+ G Sbjct: 908 RVGRSNK---LAYAYF-TFRKDKVLSEEAAKRLSAIKEFTELG---SGFKIAMRDLEIRG 960 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNLEFEEAAQI 658 K + + V DM + L ++I L+G + ++ A I Sbjct: 961 AGSIVGKLQ-------HGHINAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQIDIRVNAYI 1013 Query: 659 RDQ 661 + Sbjct: 1014 SSE 1016 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 93/619 (15%), Positives = 196/619 (31%), Gaps = 92/619 (14%) Query: 48 TIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 + ++ P ++ + +AA+L EM F V + +P +T Sbjct: 21 FYCSELSAKNTPLVIFTKDSYVAARLQQEMLWFNQNLVV-------------SMIPDWET 67 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S + + RL + + ++ D++++ + SA+ L + + G Sbjct: 68 LPYDSVSPHPDLISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQK 127 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +D ++ L E Y + F G F VRG +ID+FP S I R++ FD E+E + Sbjct: 128 VDLESLKMVLIENGYINVQKVFHPGEFAVRGGLIDLFPMGS-TIPYRIDFFDTEIESIKT 186 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T + + + I P I + +E + Sbjct: 187 FDVETQKSIYPTNKIEILPARECPLTELSIETFRKNYRERFSGDPSK------------- 233 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 ++ +G+E Y + T+FDYLP D L+ D Sbjct: 234 ----SPIYTNISNKIPFAGMEWYLPLFY-----QETNTIFDYLPDDTLI--DVPFKLSSS 282 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 I + + R + E L P+ I + + + +L + Sbjct: 283 IDHYWLDAQTRFKMYA---------------YDIERPILNPEEIMMDSVKFHQDLNRFKN 327 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 D V L I+ + + D +++ ++++++ + E + + L Sbjct: 328 LNFD--VIDNPLPKITIDYKDGYKNIADYINQC------PKKIIISAESLGRRETIHKML 379 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E + E + I+ D L+ + L+EG + + D Sbjct: 380 TECDLS-------LKRSESINILDP----VIDHLLIQSPLKEGF--SDEYFEVFTEYDLF 426 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 I + I + +E HG+ Sbjct: 427 ------PDFIHQ-----------EKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGR 469 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 ++ + ++ + + T K P+ + +++ +H+L + Sbjct: 470 YQGLVQLDMLGSINEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEK 529 Query: 647 AQNLEFEEAAQIRDQLHQL 665 + ++ +L L Sbjct: 530 EKRKALKQVYDTAAELLNL 548 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 129/411 (31%), Gaps = 37/411 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 ++ + P + + ++ + + +Q Sbjct: 589 VIKDMESAR--PMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNF 646 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 ++ + + IE SRF + + + L + +V +H + + + Sbjct: 647 VDRFS--SFPVEIEEISRF----KSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNI 700 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G R L + ++ATP L S + D + Sbjct: 701 GLIIVDEEHRFGVRQKEMLKKF--------KTNTDFLALTATPIPRTLSMSLEGLRDFSI 752 Query: 414 RPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE- 471 T + I+ + + + + + ++E L + Sbjct: 753 ISTPPQKRLSIKTMVKSFSEGIIKEALTREFNRGGQAYFLHNDVSSIYAISEKLTKIMPD 812 Query: 472 -RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +V H + E +++D F++L+ ++ G+D+P + + I +AD+ G + Sbjct: 813 AKVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQ 872 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R+ + + + +++ ++R + +Y E+ G G Sbjct: 873 ----LHQLRGRVGRSHHQ---AFAYLLI-DENRSLTSKAKKRLEAIQYLEDLG---SGYF 921 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + D+ G + E + M K L + + L+ Sbjct: 922 LAMHDLEIRGAGEILGDQQSG-------EIHEIGFSMYLKMLNRAVTHLKN 965 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 145/476 (30%), Gaps = 46/476 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + +A+++ + G+TG+ K+ +A R T ++ + Sbjct: 3 PLFDAIQTDKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGES 62 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 +QL ++ P P +P+ D + + + RL Sbjct: 63 LSQLKSDLATLLP-------------AAPVLELPALDFVTFSVTAKSLELTAQRLDIYSR 109 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L V+V+A+ AI P + + + L G I+ +L L Y R DQ Sbjct: 110 LLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVD 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F RG +IDIFP + LR+ELF +E++ L FDP T + + + + I P Sbjct: 170 NVGQFSARGGIIDIFPL-NRPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMP--- 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + E + + A V E ++ E + +++ Sbjct: 226 -IIEPEHSGKRTTVLSYLPADGCVVFDEPARVREAMAKLIKENPEIKRRVYTWPDIAAAA 284 Query: 309 ------YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 Y L + P P + + + + ++ + Sbjct: 285 QAFNVVYLSLLLQKTPYTEPGEIHSITAKGIAPFHRQMEMLVDELKAWLDRKLQPVIFMT 344 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 + + + T+ +GG P L + Sbjct: 345 NRDKAVHLQHNLTQEGVSAVFSEQLTTLVPGTVMIT-VGVLAGGF-----ELPHAKLAVL 398 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 E Q IR RAA +++ L+ V H Sbjct: 399 TEKDIFGRQK----KGIRPRAAKGQQITYF-----------RDLKVGDYVVHVNHG 439 Score = 208 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 29/295 (9%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQ 441 + +SATP L S D + T + ++ V + + IR+ Sbjct: 695 WRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRR 754 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDV 499 +V + + + L E R H + ++ D G +D+ Sbjct: 755 ELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSEDRLERVMLDFYEGNYDI 814 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV +++ GLD+P + + + DADK G + L Q GR R A Y T Sbjct: 815 LVCTSIIESGLDVPNANTIIVYDADKFGLAQ----LYQMRGRVGRTHR-MAYAYF---TY 866 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K + E +R + K E G G + D+ G + Sbjct: 867 QRDKVLTEVAEKRLQAIKEFAELG---AGFKIAMRDLEIRGAGNILGPQQ-------HGH 916 Query: 620 PDNVPMDMSPKALQQKIHELE-GLMMQHAQN--LEFEEAA-----QIRDQLHQLR 666 +V +M + L + + EL G ++Q LEF A I D +H++ Sbjct: 917 ILSVGFEMYCRLLDEAVQELRTGKVVQPPPEPVLEFNVDAYLSGDYISDAMHKIE 971 Score = 42.9 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + + ++V V T ++ + + G V + E Sbjct: 582 FGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQHYQTFSSRFAGFGPVVDVISRFRSPKE 641 Query: 485 RMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + + +R G+ DVL+G + LL + ++ L+ + + + G + E+ Sbjct: 642 QKATLAKVRAGQVDVLIGTHRLLNPDVQFKDLGLLIVDEEQRFGVAQKEKLKKWRTN--- 698 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 +L + R + E Q + + + Sbjct: 699 -----IDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIR 753 Query: 604 AKTKAKGRGK--SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + G+ + D + +S +I G M + Sbjct: 754 RELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSE 797 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 80/505 (15%), Positives = 157/505 (31%), Gaps = 61/505 (12%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS +A I + +V+AP A L E+ F Sbjct: 25 LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSE------------TGLSI 72 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMM 158 +P + +S + + R +L+ V+V + S++ L + K Sbjct: 73 ELLPDLEILPYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L+VG + + I +L Y R + G F +RG +ID+F +R++ D Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLY-TNPIRIDFDD 191 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E+++ + LFD + ++TI TI P HY ++ + Sbjct: 192 EKIDLIKLFDVDSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEW---- 247 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVV 337 + G+ NY E +++DY L V Sbjct: 248 -------------PLYNFIETYAESHGVYNYLPLF-----FESMSSIWDYCKPGTELFCV 289 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I + ++ L + + F A P Sbjct: 290 GDIKTPIKDYQKLINQRFNSQDNLSQPNLKPSELF---------FSATEQINKINEMHPI 340 Query: 398 NYELEKS-GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N + +K + + T L+P+ + +D ++ + + + ++L++ +K Sbjct: 341 NLQHQKCWKSHDHNSINFDTRPLEPLTA--FKTSSMDKIIHGLLETSTN--KILLSAGSK 396 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L E R R+ + V V + E + Sbjct: 397 NRIAFIENQLREFSIASR----------RVSNWNEFLERRAGVFVTEKSISESFITAKSG 446 Query: 517 LVAILDADKEGFLRSERSLIQTIGR 541 + I + + G S R G+ Sbjct: 447 IAVIGEIELFGRRSSTRKYRSPAGK 471 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 23/276 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + G++ D + T I + Sbjct: 737 EHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYI 796 Query: 429 ATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 + L+ E ++ + +VL E++ E + + + H + Sbjct: 797 SQWDKSLIHEACQREISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSL 856 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ EFD+L+ +++ GLD+P + + I AD+ G + L Q GR R+ Sbjct: 857 ERVMMKFYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQ----LHQLRGRVGRS 912 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IA 604 Y + PS + R+R + + E+ G+ G D+ G I Sbjct: 913 ERQ---SYAYLMIPSKH-TLTNEGRQRLEAIEAIEDLGV---GFILATHDLEIRGAGEIL 965 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + + + L Q I L Sbjct: 966 GDEQSG--------QIQKIGFSLYKDMLAQAIDSLR 993 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 88/629 (13%), Positives = 196/629 (31%), Gaps = 83/629 (13%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + E ++ + + + + +A RP +VL N LA Q Y + F Sbjct: 16 KALEQIQKKKSPIAIS--STIQEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLS 73 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 E F + ++ + + + + ++ ++ + + +VV Sbjct: 74 EKECSLFGT-------------DESLRVEAIASSPELSAQQVDTLFSLQKHPNQIVVTCP 120 Query: 143 SAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 SA L P + + +HL + + + +L Y + Q +F +RG ++D Sbjct: 121 SAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLLASGYHQQAHVDQPLSFAIRGGIVD 180 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ D +R+E FD ++E + FD + + TI I P + +I + Sbjct: 181 VYSINYD-HPIRLEFFDTQIESIRFFDENIQRTIGTIEEVEIVPASIVFFSFNQIGDIRK 239 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 I+++L V L++ +L+ + + FD M + Sbjct: 240 GIQQDLERNPNVFLQD-ELMTTIQAMEAHLFDKSMYPYYAFVPN---------------- 282 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L+DY+ L + DE + + + D + +L D L + Sbjct: 283 MAGLWDYMEDAELFISDE--ILVNDAIKRLKEDTISYIQEMAQENKLLPRFD---LWHDL 337 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ Y + G+ + ++ L E R Sbjct: 338 ERSMPASRCYYGDSYGDPVSHIEEVYLPNE------------------------LLEKRI 373 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + A +RV V L K+ + + E L+ R+L + L L E D Sbjct: 374 QIAQKQRVTVFVLNKKEIQRIREILDHEKIEYRFL-----KEKEEIEKEALYLYEAD--- 425 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +G + + + + + GR I++ + Sbjct: 426 ----WSQGFFLADQEVAVYTARELF-------EVHHRKGRYENKFRNAEIIHAYQELEPK 474 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +E + + + + + + + K Sbjct: 475 DYVVHANYGVGQYMGIETKEINHIKRDFLRIIYKANSELLVPLE-QFRLVRKFVSREGIV 533 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + ++ +L+ + + A L Sbjct: 534 PKLNKLGSGDWEKTKTKLQKNVEEVATRL 562 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 58/421 (13%), Positives = 122/421 (28%), Gaps = 35/421 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A Q + Sbjct: 615 PMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNRYKDFA--- 671 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L + + + L + ++ +H + + + + Sbjct: 672 ---VRIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLVIDEEHRF 728 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +SATP L+ S V T L+ Sbjct: 729 GVEHKEKIKELRNGVD--------VLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSV 780 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ I++ + +V + L++ R +H + Sbjct: 781 QTYVVEKNQALIVDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARIGVVHGKLG 840 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +I+ E D+LV ++ G+D+P V+ + I DA G + + Q GR Sbjct: 841 RDEIEDIMWRFNHQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQ----IYQMKGR 896 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + P+ K + E ++R + K + G G + D+ G Sbjct: 897 VGRSNR---LAYAYLLIPNR-KQLSEVAQKRLQAVKEFAKLG---SGYKVAMRDLTIRGA 949 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 ++ D V +D + L+ I + + + Q+ Sbjct: 950 GDLLGSSQSGF-------IDTVGIDFYIEMLEAAIEAKRNHQPIQKKEPKVKNNIQVSSY 1002 Query: 662 L 662 + Sbjct: 1003 I 1003 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 98/634 (15%), Positives = 188/634 (29%), Gaps = 103/634 (16%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 T++L P+ A +L ++ + V P +T + S Sbjct: 41 TVILTPSGRGAEELARDLSCWTRGVEV---------------FPDWETLPHERLSPRTDT 85 Query: 120 EQMRLSATKAMLERRD-------------------VVVVASVSAIYGLGDPDLYLKMMLH 160 R+ A + +V + A + + + Sbjct: 86 MARRIWALHRLTHPEAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTKILSYPLFK 145 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 VG + + R LA L Y R + RG + +RG ++D+F A S +R+ELF +E Sbjct: 146 AQVGKAYGRDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSAVS-PHPVRIELFGDE 204 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + F + + + P E + +L Sbjct: 205 IDSIRPFAVSDQRTFNQEFQSVTAPACREFLLDETARVHAASLAAQLP------------ 252 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + + Y G+E+ L G LF+ LP LV + Sbjct: 253 --------QAAEILNLAAQGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATDL 299 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS-ATPGNY 399 + + + + + PL+ L + VS A G Sbjct: 300 PRLEARAVELGETTAEF----LAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMK 355 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 L S + P+ ++S IR+RA + V++ + M Sbjct: 356 TLRISPFATHESATTSGAETVPLPTTGATG-----IISTIRERAREHWTVVIAATSNGMV 410 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + L L E+ + ER G+ V V + EG + E L+ Sbjct: 411 QRLHRLLAENDIPAQVSADLDAEPER--------SGKTWVTVA--PITEGFALAEAKLLV 460 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 I +A+ G R AR+ K L P+ + + + + Sbjct: 461 ISEAEALGK------------RQARHHEQKVKL------PTRRRKTIDPLSLSPGEYVVH 502 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 +HGI K + G + + + + + +L + Sbjct: 503 AQHGIG--RFVKLEKRTIGKGNKATSREYVVLEYAPSQRQGSKDLLWVPTDSLDMLSKYV 560 Query: 640 EGLMMQHAQ--NLEFEEAAQ-IRDQLHQLRELFI 670 G ++ ++ +A Q R + + + Sbjct: 561 GGETPTLSKMGGTDWNKAKQKARKAVKDIARELV 594 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 67/456 (14%), Positives = 135/456 (29%), Gaps = 31/456 (6%) Query: 225 SLFDPLT--GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKL 280 F P T + + + P + + L E Sbjct: 606 HAFSPDTPWQRELEDSFEYVETPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVR 665 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + Q + L +E + + + F + + D + Sbjct: 666 AAFKAVQDGKQVAVLAPTTLLVSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKADLA 725 Query: 341 HVTIPQIGGMY--RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + G + + R + L + + + +SATP Sbjct: 726 DGKIEVVVGTHALLSGKVRFKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIP 785 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKR 457 LE + + T + + V D + + IR+ + +V + Sbjct: 786 RTLEMAITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRREMLRDGQVFYVHNRVQ 845 Query: 458 MAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + ++L+ R H + + +++ D EFDVLV ++ GLD+ Sbjct: 846 DIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNA 905 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I A++ G + + R G+ Y + P + ET R K Sbjct: 906 NTIIIDRAERMGLSQLHQL-------RGRVGRGRERGYAYFLYPG-GDTLSETAFERLKT 957 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 N G G+ D+ G N+ + G ++ D+ + + + Sbjct: 958 IGSNTSLG---AGMAIAQKDLEIRGAGNLLGGEQSG--------HIASIGFDLYVRMVGE 1006 Query: 635 KIHELEGLM--MQHAQNLEFEEAAQIRDQLHQLREL 668 + G A NLE A I + + + L Sbjct: 1007 AVAAYNGEEPAEDTAVNLEIPVDAYIPEDYLEAQSL 1042 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 98/643 (15%), Positives = 210/643 (32%), Gaps = 76/643 (11%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 TL V + F +A IA L + + ++ + L + P+ V F Sbjct: 16 KKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF--- 71 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE----RRDVVVVASVSAIY-G 147 P+ D S + ++ RLS ++ + ++V+ +VSA+ Sbjct: 72 ----------PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 + L + ID ++ +L + R + ++ G + VRG ++D++ + Sbjct: 122 SVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEP-T 180 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +R++ F ++ L LFD T + + I F I + + + I + E Sbjct: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + +++ G+E++ F + T+F Sbjct: 241 GTT-----------------TQEDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFP 278 Query: 328 YLPADGLLV---VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 YL ++ V E+ Q+ Y R + + + + + Sbjct: 279 YLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFD 338 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ--------VDDLL 436 QT + + +++ + V + G V+ + +Q D L Sbjct: 339 ALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFL 398 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S + Q+A + +++ ++ + L +E HG + EI L+ Sbjct: 399 SHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI-----KKINTLTEINSLLKEEI 453 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 V++ + +G + + + + + D G + R R N A + D Sbjct: 454 AAVIL---PINQGFETKHM--ILVTETDLLGK--------KIARRVVRKKNVHAQSFFDS 500 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK-SR 615 I E ++ + I G +++ + SR Sbjct: 501 SNIEEGAIIVHAEH---GIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISR 557 Query: 616 PIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 E V +D + A + + L+ + AQ L A + Sbjct: 558 YSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR 600 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 90/277 (32%), Gaps = 21/277 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + +SATP L+ + V + + ++ I + Sbjct: 756 EQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSI 815 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 + ++ E + + + E +L+ ++ H + Sbjct: 816 SIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL 875 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + G++DVL+ +++ GLD+P+ + + + AD G + L Q GR R+ Sbjct: 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQ----LYQLRGRVGRS 931 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 I + + ++R + + G D+ G Sbjct: 932 K----IASFALFLLPENRPLTAAAQKRLRILQ---SLNTLGAGFQLASYDLDIRGTGNLL 984 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + + ++ K L++ + ++G Sbjct: 985 GEEQSG-------HIREIGFELYQKMLEETVASIKGQ 1014 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 210/706 (29%), Gaps = 97/706 (13%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-----IADLQRPTM 61 L F P+ +Q I + ++ L + + +A++ R + Sbjct: 39 LTDIFTPTNEQLFPIDKAQKRW--------LYPAYAAAGSLWLASLSDCPVANVANRLKV 90 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ ++ Q+ E+ + V P +T + S ++ I Sbjct: 91 VVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYDELSPHQDIVS 135 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R++ M + +++ S+ + P + L+VG I D LA Sbjct: 136 ERINLLTDM--PKQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAG 193 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y D F+ G F VRG VIDIF LR++LFD E+E + F+P T + +ST Sbjct: 194 YRAVDNVFEPGEFAVRGSVIDIFAMG-QPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTL 252 Query: 241 FTIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE---------------- 282 + + + + +L K + + L Sbjct: 253 MDLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNF 312 Query: 283 ---EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ R + + SG+E Y LF Y P D L ++DE Sbjct: 313 AAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFPKDTLFIIDE 372 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + R + + L P A + +S + Sbjct: 373 NTAEAQADYWSQIQRRYEERRHDIDKPIVEPTLLYLPSNSLNEMLNAYPRVILSQS---- 428 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER----------- 448 + + D L P PV+ Q + L E+ A+ Sbjct: 429 --DLAAADNTQSGKVKLPALMPP--ELPVSHQKAEPLLELLNYASAGWDDNTTEAALARP 484 Query: 449 VLVTTLTKRMAEDLTEYLE-EHGERV-----RYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +LV T E L E + + ++L S++ ++ + V + Sbjct: 485 ILVVAETAGRREILLELFRGKLNVQTFDSLQQFLGSELYQQSLIKNTASASNTKPTVGLT 544 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 I + G + + L I + G R ++QT R + S Sbjct: 545 IAPIERGAVI-DQHLSIISETQLFG-----RQVLQTRRRR-------------QSDVSEE 585 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + E + + GI + + I A P+ Sbjct: 586 FLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYADDASIYVPVANLQL 645 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + +H++ A+ E+ + +L ++ Sbjct: 646 ISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQAR 691 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 101/313 (32%), Gaps = 29/313 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + ++ ++ATP L + + D + T + V Sbjct: 848 EHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFV 907 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVER 485 + + L+ E I + +V + E + E + E R H ++ Sbjct: 908 MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPEARVGVAHGQMNERGL 967 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++++ +F+VLV ++ G+D+P + + I ADK G + L Q GR R+ Sbjct: 968 EQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRS 1023 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + PS K + ++R E G D+ G Sbjct: 1024 HHQ---AYCYLLVPS-VKGLKGDAKKRLTAI---ERANTLGAGFMLASEDLEIRGAGEIL 1076 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLEF-------EEAAQ 657 K + + + L++ ++ G L A Sbjct: 1077 GKQQSGN-------MQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDINLHSSALI 1129 Query: 658 IRDQLHQLRELFI 670 D ++ + + + Sbjct: 1130 PEDYVNDVPQRLL 1142 Score = 42.5 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 6/199 (3%) Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 H + + V A A ++ S Sbjct: 660 HKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQAKEGIHFKVETAQYELFASQFAFEET 719 Query: 401 LEKSGG-DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK--- 456 +++ D V ++ +D +I + + + +V V T Sbjct: 720 PDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLA 779 Query: 457 -RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPE 514 + ++ + + RV L + +++ DL G+ D+++G + LL++ + Sbjct: 780 GQHEDNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFAN 839 Query: 515 VSLVAILDADKEGFLRSER 533 + L+ + + + G ER Sbjct: 840 LGLMIVDEEHRFGVRHKER 858 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 86/624 (13%), Positives = 191/624 (30%), Gaps = 78/624 (12%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 L ++ S + +A+ + +++ N A +LY + E Sbjct: 19 KKESKLGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGE-------- 70 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA-IYGLGD 150 + ++ + + + + ++ + + + +VV + +A I+ L Sbjct: 71 ------KVLFFGVEESLRVEAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPA 124 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P+++ + + + + + L E Y + Q + RG +ID++ + Sbjct: 125 PEVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYE-Y 183 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 LR+E FD E++ + FD T + + I +I P + + E I + ELA Sbjct: 184 PLRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANV 243 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + LE DL+ + + +R R T+ DY+ Sbjct: 244 KGFTNASKEHLEAI-----VNEDLDAI------ANHSPEARLYKYRAFLNQQATIMDYV- 291 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + ++V I + A ++ EA Sbjct: 292 KNACVIVSSEEEVKDSIKHAAEENIA-------------------YIQEMYQEANGLLKF 332 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + A V V L I+ + ++ + ++ ++ ++ + Sbjct: 333 SMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDINLERTMDQLITQSHSDK--V 390 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + L + + + E L+E +R+E L+ G +L + L EG Sbjct: 391 LLCLDESEIKRVRELLDEKNVS----------YQRVEETDTLKNG-ISIL--HHRLIEGF 437 Query: 511 D-MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 + E V + S A Sbjct: 438 TCISEQIHVY-TGKELFQSKHSISRYSNKFKEAE-----------VLHDYQELNVGDYVV 485 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN---VPMD 626 + KY G++K + I G ++ + R V + Sbjct: 486 HHQHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVLLVPLEQFQLIRKFVSKEGAVPKLNK 545 Query: 627 MSPKALQQKIHELEGLMMQHAQNL 650 + ++ ++ + Q AQ L Sbjct: 546 LGSGEWEKTKRKVSEKIAQLAQRL 569 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 112/355 (31%), Gaps = 32/355 (9%) Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPA---DGLLVVDESHVTIPQIGGMYRGDRARK 358 + ENY + P + + ++ +H + + Sbjct: 670 FTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLLVI 729 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + +SATP L+ S + T Sbjct: 730 DEEQRFGVEHKEKIKEF--------KNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPP 781 Query: 419 LDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRY 475 + ++ + + I++ A N +V + ++ L E + Sbjct: 782 QNRMPVQTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGV 841 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + + +++ + VLV ++ G+D+P + + I +AD G + L Sbjct: 842 AHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ----L 897 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + S + + E +R K K + G G + D Sbjct: 898 YQIKGRVGRSDR---LAYAYLM-YSPQRQLSEIAMKRLKSIKEFTQLG---SGYKIAMRD 950 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + G + D V +DM + L I E +G+ + + L Sbjct: 951 LTIRGAGDMLGPQQAGF-------IDTVGIDMYIEMLNDAIMEEKGIKKEVKKEL 998 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 78/664 (11%), Positives = 193/664 (29%), Gaps = 117/664 (17%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + Q + ++R+ + L + + S + ++ + ++++ + Sbjct: 2 LYAKIEEILAQSKFMQRVLK-LPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 +A ++ ++ + Y+P + ++ S + I R+ Sbjct: 61 DIIAEDIWDDLCVLIGKENAH-------------YLPDYEILPYEERSPHYSIRATRMET 107 Query: 127 -TKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARN 184 + + + S A+ +L + +LHL GM + +L L ++ Y Sbjct: 108 FLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQ 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTI 243 Q + RG +IDIF +R+E + +E+ + +F T + + + TI Sbjct: 168 YQVSKVFQAAKRGGIIDIFSPPL-TNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTI 226 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + G+ Sbjct: 227 LPARELSLSD---------------------------------VDSGSPIIAKIRNQGFF 253 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDR-ARKETL 361 GIENY L T DY D +LV + + + ++ ++ Sbjct: 254 EGIENYYALLCNELQ-----TFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEA 308 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 G + ++ L ++ + + +EL ++ P Sbjct: 309 KIQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMR----------AP 358 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + L + R + ++ + A+ + + + Sbjct: 359 FASQPNFESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSI--------------- 403 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 G+ +L EG + + L D + +S R Sbjct: 404 -------------GKIPFTEFFGVLHEGFSLEDCHLNLWTDHEIFNRYKS-RRYTPR--- 446 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 + + I E + + +HGI K + + + Sbjct: 447 -----------------YAPGETIVNYEDLKPGDYVVHIDHGIGVFEGLKIIRLDGSDVE 489 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + A P + V ++ ++ + +++L + + ++ I Sbjct: 490 CLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLGSSKWNNTKRKAAQQIELIAAD 549 Query: 662 LHQL 665 + +L Sbjct: 550 IVKL 553 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 124/402 (30%), Gaps = 39/402 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A + Q + E + + Sbjct: 602 APMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYRVFRERLAQYP-- 659 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 S L + + + +H + + + + Sbjct: 660 ----VKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLLIIDEEHR 715 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + T+Y+SATP L + + + + T + + Sbjct: 716 FGVRHKEKLRALQSNVD--------TLYMSATPIPRTLNMALSKLKEISLMQTSPKERLP 767 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + + +++ + IR+ +V + E + L +VR++ H+ + Sbjct: 768 VRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQM 827 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + ++ D E+ VL+ ++ G+D+P + + I +A+ G + L Q G Sbjct: 828 PEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQ----LYQMRG 883 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + ++K R+R + ++ G + D+ G Sbjct: 884 RVGRSNRR---AYAYLL---ISKGTTTVARKRLEAL---TQYDYLGAGFQVALRDLELRG 934 Query: 601 QN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 I TK G + + + L I +E Sbjct: 935 AGTILGTKQSGI--------IQAIGFNYYNRILANAIQAVEK 968 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 151/422 (35%), Gaps = 49/422 (11%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 + +A + L + F PE V F P+ D AS Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTF-------------PAWDCLPYDRASPA 92 Query: 117 EHIEQMRLSATKAMLERR--DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAIL 173 RL+ A+ + V+V +V+A+ P +++ L G +D+ + Sbjct: 93 LRATSERLATLHALQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLA 152 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y R D ++G + VRG ++D+FPA + ALR++ F +E+E + FD + Sbjct: 153 AMLQANGYIRTDTVTEQGEYAVRGSLVDLFPAG-EPHALRLDFFGDEIESVRQFDATDQR 211 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + FT+ P + + E I + +E A + Sbjct: 212 TIGPVDGFTLLPASEALLDEETIKRFRGRYRERFGA-----------------SATGDPI 254 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG----G 349 + +++ +G++++ R TLFD+L + L++ + + + Sbjct: 255 YQAVSDGRRLAGMDHWLPLFEERL-----ETLFDHLAPEDLILREAGSIKAAEARFEAIA 309 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 Y +R R T +R + E A+A + I++ E + V Sbjct: 310 DYHANRVRARTTDPGSYRPLEPGELYLAADEWRTAIADRPIHLVTPFAEPESARVLDLGV 369 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 D G D E D ++ + +RV++ + + E L EH Sbjct: 370 D------GARDFAPERTQGVNIYDAVIEHVEALGKAGKRVVLASYSTGSRERFAGLLAEH 423 Query: 470 GE 471 G Sbjct: 424 GL 425 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 62/399 (15%), Positives = 121/399 (30%), Gaps = 36/399 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + +E Sbjct: 671 PMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICPTTLLARQHYRNFVER------FH 724 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ LS D L + +V +H + + R + + Sbjct: 725 GMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAKGIAFKRLGLVIVDEEQRF 784 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + ++ATP L+ + + + V T +D + Sbjct: 785 GVTHKERLKAL--------KTDVHMLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAV 836 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA ++ E + + + + T + D+ +YL + V Y+ H + Sbjct: 837 RTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLPDIEDYLRKEVPEVSYVVAHGQMA 896 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E + +FD+LV ++ GLD+P + + + AD+ G + L Q GR Sbjct: 897 AGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNRADRFGLAQ----LYQLRGR 952 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y T + ET +R + + G G D+ G Sbjct: 953 VGRSKTR---AYAYLTTGDRG--LTETAEKRLHILQNIDTLG---AGFQIASHDLDIRGA 1004 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + V ++ L++ I + + Sbjct: 1005 GNLLGDEQSG-------HIKEVGFELYQSMLEEAILDAK 1036 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 61/390 (15%), Positives = 120/390 (30%), Gaps = 57/390 (14%) Query: 47 FTIANVIADL--QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 N+ L + +++AP+ A LY + + +A + Q Y Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSA---------WQQTLYYFSD 65 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMM-LHLTV 163 +T + + + R+ + +V+ S SA P +L +H V Sbjct: 66 WETLPYDHYTPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAV 125 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G I Q+ ++ RL + Y ++G + RG ++D+FP + +R+E D+E++ Sbjct: 126 GDHIAQKTVINRLLQAGYQSTHFISEKGEYATRGNIVDLFPM-AAQTPIRLEWLDDEIDS 184 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + FD T + + +I P V + ++ Sbjct: 185 IRFFDLKTQLTLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGE-------------- 230 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + ++E G+E Y + L DY P++ + + Sbjct: 231 ---HIHQSGIYQSLSEGRTPQGLEYYLPLF-----FDETAHLLDYFPSNTCYIPADELAV 282 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRP----------------------LKFEE 381 Q Y R ++ + L L F + Sbjct: 283 SLQNHDDYCHKRYQRLNHLRENSLLAPEQLWFSPQELQERLATLPTHMPKNRCTALPFSD 342 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 Q + AT L S + + Sbjct: 343 ETPRGQQWLEQFATAERAVLHFSSQGLREY 372 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 122/426 (28%), Gaps = 43/426 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ AA Q L+ + + Sbjct: 587 PMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIA--- 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + L + +V +H + + R + Sbjct: 644 ---VRIAAISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDE---- 696 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L + + D + T Sbjct: 697 ----EHRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIATAPAGRQSI 752 Query: 425 VRPVATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 ++ ++ E + ++ + + L E + R H + Sbjct: 753 QTIISQYDPIVIEEACERELNRGGQIYFLHNDVSSIDRIARALSEQLPQARIAVAHGQLR 812 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +I++D +D+LV ++ G+D+P + + I ADK G + L Q GR Sbjct: 813 ERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIIINRADKLGLAQ----LHQLRGR 868 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y ITP+ + + +RR E G D+ G Sbjct: 869 VGRSHHQ---AYAYLITPAWQ-TLNKDAQRRLSA---FTELDSLGAGFLLASQDLEIRGA 921 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE------GLMMQHAQNLEFEE 654 I + G + + M L++ L+ + ++ E Sbjct: 922 GEILGDEQSG--------QIQQIGMSYYLDLLERATAALKSGQDFNQEEIAVRYQIDIGE 973 Query: 655 AAQIRD 660 AA + D Sbjct: 974 AALLPD 979 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 104/319 (32%), Gaps = 37/319 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + S++ + + M + + + P Sbjct: 209 TPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP----------- 257 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QT+ SAT + + D V G D I+EV + Sbjct: 258 ------RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKE 311 Query: 433 DDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D L + +E+ +V TK+ ++ L+ L G V +H D ER ++ + Sbjct: 312 DKLCKLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSE 371 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G VL+ ++ GLD+ +V LV D F + + IGR AR+ G A Sbjct: 372 FRSGRIPVLIATDVAARGLDISDVKLVINYD-----FPNNSEDYVHRIGRTARSGKTGTA 426 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI---LALGQNIAKTK 607 + + + RE Q N + ++ G++ + Sbjct: 427 YTFFTASNIRQSPNLIALL--REANQPINPDLIQLGDAARAEMAQKHRGKMRGRDRFYNR 484 Query: 608 AKGRGKSRPIVEPDNVPMD 626 + P + Sbjct: 485 DRNASNRYPYAKSKLSGSY 503 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 91/582 (15%), Positives = 186/582 (31%), Gaps = 67/582 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI-ADLQRPTMVLAP 65 +++ Q + + + G++GS K+F ++ A L +P +++ Sbjct: 1 MDNTLTKLLSQNPSFVDGLNAFQRKGKSV-IYGLSGSQKSFLLSQSFSAGLTKPVVIVVH 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 +K ++ F P V F P++D + + ++ ++ Sbjct: 60 DKDHKEMWERDLAFFMPNAPVLSF-------------PTTDHVDFTTVARSLEVQGAQMR 106 Query: 126 ATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A + + VV+A+ + P LH + I++ L +L + Y R Sbjct: 107 ALALLAWQEPAVVIANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 DQ QRG F VRG+++DI+P SD +R+E F +E++ L F + + I +T+ Sbjct: 167 DQVEQRGHFAVRGDILDIYPVNSD-HPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVT 225 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + + + + E ++ E L + + D + Sbjct: 226 P---FFLGKSDADST---LLSYVKEGTLIYDEPGRIQE--ALKKFLKEDPTHRKNHCDWN 277 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ + + + + ++ + + + D ++ + + Sbjct: 278 ELQRTVDARNQVAFTFMQQRSIGLTGFNPIGIQGKTMTSFERQIPLLT-DEIKQWHRLHH 336 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQVVRPTGLLDPI 422 + R E S T + G + D P L + Sbjct: 337 QVVIVLNNQQRREGIERALEGEHIVFTHSDTWIAKPNTVIILNGLLTDGFELPNSHLVVV 396 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS---- 478 +E Q L R + + + T L V +H Sbjct: 397 VEGNIYGQQKRKL----RNKPKKGQEINYFTD-----------LTPGDYVVHSMHGIGKY 441 Query: 479 -DIDTVERMEIIRDLRLGEFDVLVGINLLREGLD---MPEVSLVAILDADKEGFLRSERS 534 + T+E I RD + G D +P +L K + Sbjct: 442 IGLKTIETEGIHRDYIE----------IAYAGTDKLFLPANNL---DQLQKYIGNEGDVP 488 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 I +G R K + K +A + E +RE + Sbjct: 489 RIHKMG--GR-DWAKVVTKAKKSIDDLADKLVEIYAQREITE 527 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 44/434 (10%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q Q L G Sbjct: 568 VPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTFLNRFAPFGVK 627 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + N R S + + + + ++ +H + + + Sbjct: 628 VDVLNRFRTTSEKKQ------ILKGVEDGSIDILIGTHSLLNKKVVFKDLGMLVVDEEQR 681 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-I 422 +G A + +SATP L S V + V T + Sbjct: 682 FGVAQKEKWKE--------WASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLP 733 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 ++ V ++ + I++ A +V + E LE G R H + Sbjct: 734 VQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESALPGLRYAVAHGQM 793 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + EI+ D G +DVL+ +++ GLD+P + + I DAD+ G + L Q Sbjct: 794 TGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMR- 848 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R + Y + K + E +R K + E G G + D+ G Sbjct: 849 --GRVGRSRRRAYAYFM-YRPDKILSEAAEKRLKAIEEFTELG---AGFKLAMRDLEIRG 902 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH------AQNLE--- 651 + +V M L++ I + + ++ A +LE Sbjct: 903 AGNLLGSQQHGN-------IASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAIDLEVDA 955 Query: 652 FEEAAQIRDQLHQL 665 F + A I+D ++ Sbjct: 956 FIDDAYIKDSARKI 969 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 109/662 (16%), Positives = 213/662 (32%), Gaps = 96/662 (14%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ + L+ G GV S + F +A A +PT+V+ Sbjct: 2 LIDSLTFTLEKSGCLDAFWGKLDAGEDGTL--GVASSARPFLVAARFAHRPQPTLVVVAG 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + V F D + + R+ A Sbjct: 60 EDAAVAFSRSLAAYLGDERVMRFPERSD-------------YPFVPKPSDPAQVARRMEA 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMII------------DQRAIL 173 A+ R+VVVVAS A+ P + + + L+ G + + Sbjct: 107 VHALASGREVVVVASARALVRALPPAGSDVHVPVALSAGRELAAMPGAQAASVTEFEDFA 166 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L E Y + GTF VRG ID+FP + +R++ F +E+E + P TGQ Sbjct: 167 HALEERGYRNTGELDGPGTFAVRGGTIDVFP-GNLVYPVRLDFFGDELEEIRRIVPTTGQ 225 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + +P +IYP + + + +A ++++ A + Sbjct: 226 TIQALPDVSIYPVVEFSCSKRGLARARQKLERPAAT-----------------NPVLRDV 268 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE ++ G + +L TL DY+ L V+ E + Y Sbjct: 269 LEKLDGGLRFDGSDMLLPYLY-----ATTSTLGDYVRPGALSVLLEPRSLFDDMSHAYDD 323 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 G S++ L E + + ++ Sbjct: 324 ---------AAGRAKGSSIPVDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDEL----- 369 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ VA D L +R + V+ + R +D+ +HG + Sbjct: 370 --------PVKRVEVAGHPDKLFGRLRSLVDTDYTVVFSASNFRARQDMKLAFVDHGLPI 421 Query: 474 -RYLHSDIDTVERMEII-RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 L ++ D E I R LR G +V+ L G+ +P+ L + +D +G Sbjct: 422 QETLDAEEDADELEGIAKRRLRRGVVNVVDVDVPL--GMIIPKAKLAIVSLSDTQGAS-- 477 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R +R+V+ I + + + A +E ++ G + Sbjct: 478 -------TSRPSRHVDITEITFPYQPGDYVVHAAHGVAYFKELVRR-------DVDGTAR 523 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQ 648 + + + + + V P+ ++ + + + + A Sbjct: 524 DYLLLEYSEGDKLYVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAF 583 Query: 649 NL 650 +L Sbjct: 584 DL 585 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 35/409 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q E G Sbjct: 638 PMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHYTNFKERCEPFGVR- 696 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + V+ +H + + + + + Sbjct: 697 -VEVLSRFRTPAQQAAA----LKGFQEGDVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRF 751 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G + N + + +SATP ++ S V D + T + + Sbjct: 752 GVGHKEQMKNLRESID--------VLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPV 803 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 EV D + IR+ A +V + R E+ + RV H + Sbjct: 804 EVHVGEWDPDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVAHGQMS 863 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D GE DVLV ++ G+D P + + I D+ + G + + Q GR Sbjct: 864 KEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGR 919 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + E + EH G+ + D+ G Sbjct: 920 VGRSCTQ---AYAYFMFPEHMELTEEAA----ARLTALNEHTDLGSGMRIAMRDLEIRGA 972 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + V D+ + L Q + ++ L Sbjct: 973 GSLLGAEQSGN-------MSAVGFDLFAQMLNQAVSATREGDLKAMDAL 1014 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 91/628 (14%), Positives = 194/628 (30%), Gaps = 105/628 (16%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA 100 + G + +A + R T+ + P+ QL E+ F + Sbjct: 12 SPPGLAWQLAQLA-TTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCL-----------W 59 Query: 101 YVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRDVVVVASVSAIYGLGDPDLYLKM 157 +P+ + S + I R + +L + +++ A + + + P++ Sbjct: 60 RMPAWEVLPYDRVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAH 119 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + + G ++D A+ RLAE + D+ +G F RG + D++PA +++ LR+++F Sbjct: 120 VWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-TEETPLRIDMF 178 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +++E + FDP + + ++ FT P + + + RK Sbjct: 179 GDDIESIRRFDPESQRSGESLSAFTSVPVREVILDQRGRECFAAAFRTRFPHLRK----- 233 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 L + GIE + L DYLP ++ Sbjct: 234 -------------HPMLSSVQAGRPHPGIEALLPL-----AYDNTARLSDYLPDGAVIYS 275 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 R + F ++ +++PQ +Y T Sbjct: 276 V------------------RDIDVRRSAFAEQVRGQFEMVRSSTEPSISPQELYAVDT-- 315 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 +S + +I+ + L + ++ ++ + Sbjct: 316 -AIRAESLSAARPAIRIEPAPS--LIDYADKKQPLHALRDALTKQLNHGWKIELIAHGLG 372 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E + E E + D G I L G +P+ Sbjct: 373 QQERMLEACAE--------------------LSDTFAGAIS--SCIGYLDTGFALPQQKR 410 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD------KITPSMAKAIGETERR 571 + + + G Q + R R+ G AIL+ D ++ P + Sbjct: 411 LLLTGRELLG---------QRLPRKRRS--GPAILHADIFSSLAELKPGDPVVHEDHGVG 459 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + +E G + + D ++ + R E + + Sbjct: 460 RYHGLETIDEDGDLADFIKIEYAD----KAHVFVPVEELARLHRYTGEDAPALNKLGSEK 515 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIR 659 ++ ++ ++ A L EAA+ Sbjct: 516 WKRTRERVKRDLLAMAHELIDIEAARTS 543 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/348 (17%), Positives = 111/348 (31%), Gaps = 34/348 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + ++ +H + + +G + L + + Sbjct: 668 LAGGDIRIIVGTHRLLSDTFEFADLGMVIVDEEQRFGVKHKQKLKSLHASVDL------- 720 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L ++ + + T + V++ + E IR+ Sbjct: 721 -LTLTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVSSFDPHIAREAIRRELYRGG 779 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + E +T L E H + E + G +LV + Sbjct: 780 QVYYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTI 839 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD G + L Q GR R+ Y TP A+A+ Sbjct: 840 IESGLDVANANTLIVERADLLGLSQ----LHQIRGRVGRSHRQ---AYAYLFTPD-ARAM 891 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 R R + + E G G D+ G N+ + GR D + Sbjct: 892 TADARERLQAIAEHSELG---AGFLLARQDMEIRGAGNLLGAEQSGR--------IDEIG 940 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELF 669 +DM L + E G M + Q L+ A D + Q E Sbjct: 941 LDMYLDMLSDAVAEARGKMPKPKQPLDMHLGVNAILPPDYMPQAGERL 988 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 117/362 (32%), Gaps = 37/362 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P ++ + R+ + I A E + +++ + + + Sbjct: 210 AYVLPAVVHINNQPRLERGDGPI----ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIF 265 Query: 301 GYCSGIENYSRFLSGRG-PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + G P L D+L + +++ + + M + Sbjct: 266 GGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQI 325 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K + Q + SAT + + + + + G L Sbjct: 326 R-----------------KIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSL 368 Query: 420 D--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHG 470 I++V ++ L+ + +A NE + ++ TK+ +++T + G Sbjct: 369 SLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQG 428 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R +H D ER ++ R G +LV ++ GLD+ +V V D + Sbjct: 429 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPS 483 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + IGR R+ N G A + A + + R + + G Sbjct: 484 NSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGY 543 Query: 590 NK 591 NK Sbjct: 544 NK 545 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 68/391 (17%), Positives = 128/391 (32%), Gaps = 36/391 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I H V + + + ++L E + Sbjct: 229 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 288 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + + P L D++ + + + ++ + + M Sbjct: 289 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 348 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + +PS ++ QT+ SAT + + + + Sbjct: 349 DMGFEPQIRKIIEESNMPSGINR-------------QTLMFSATFPKEIQKLAADFLYNY 395 Query: 412 VVRPTGLL----DPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + G + D I + T V+ L L I A N +L+ TK+ A+ L + Sbjct: 396 IFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARF 455 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G V +H D VER + R G+ +LV + GLD+P V V D Sbjct: 456 LLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPS 515 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + IGR R +G+A + ++A + + + E + I Sbjct: 516 D-----IEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLK---------EANQI 561 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 PQ L+ + D L + + K + R Sbjct: 562 VPQWLS-ALADELKR-NSTMGSNNKRHNQRR 590 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 82/649 (12%), Positives = 183/649 (28%), Gaps = 107/649 (16%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ L + G TG +++ + +++ P + A + ++ Sbjct: 9 NELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLA 68 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---D 135 P +P + + S N H+ R+ A A+ +R Sbjct: 69 H---------------AAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAP 113 Query: 136 VVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 V + A+ P Y++ + VG I+ + +L + YAR D F Sbjct: 114 CAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFS 173 Query: 195 VRGEVIDIFPAE---SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 +RGE++DI A + A R+ +ER+ + T ++ + T+Y + Sbjct: 174 LRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILW 233 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 ERI + +++ +E + G E + Sbjct: 234 SEERIAFLHQNLQK-----------------LSECPAHCVPCIEELTHRKTYEGEEMFYP 276 Query: 312 FLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF-- 366 E P + +Y P+ + + + R + Sbjct: 277 L-----CFERPTCVLEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQLAHEHV 331 Query: 367 --RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R ++ L F AL T+Y + +S D Sbjct: 332 PARWYPQPEHIVLDFSAVCALHLHTVYFTHFFPQLPACESICLASDPA------------ 379 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 R + E+ + + V V +++ A + ++ Sbjct: 380 -RSFFGNIPYFKEELLRLSKDGWHVFVFAESEQQALRIRALVKG---------------- 422 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 DV V L G +P + ++ + + + G R +Q R Sbjct: 423 ------------CDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQ------R 464 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + + ++ + V++L + Sbjct: 465 ARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKT------AQSERDYVNLLYAQEETI 518 Query: 605 KTKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 + + + + + K+ + + ++ + AQ L Sbjct: 519 LIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKL 567 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 67/474 (14%), Positives = 138/474 (29%), Gaps = 65/474 (13%) Query: 230 LTGQI-VSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 +I + + + P V + ++ A + Sbjct: 602 DDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTPTTLLV 661 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + + IE SRF+ + L + ++ +H I + Sbjct: 662 EQHFRTICNRFKH--FPVRIEKLSRFVPKSEQKDILAKLAH----GDIDLIVGTHRLIQK 715 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G + L + + +SATP L Sbjct: 716 DVSFKDLGLMILDEEQRFGVQDKEKL--------KQMKTNVDCLSLSATPIPRTLHMGML 767 Query: 407 DVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T IE + + + IR+ ++ E + Sbjct: 768 KIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCM 827 Query: 466 LEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L++ + HS + + E +I F +L+ ++ G+D+P + + I A Sbjct: 828 LQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRA 887 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 D G + L Q GR R+ Y + A+ + +R + + G Sbjct: 888 DMYGVSQ----LYQLRGRVGRSDK---KAYAYLLYYH-DVALSDLAIKRLQVISDFTDLG 939 Query: 584 ITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G + D+ G N+ + G +V D+ + L++ I L+ Sbjct: 940 ---AGFKVALKDMEIRGVGNLLGKEQSGD--------IYSVGFDLYVQLLEEAIERLQHA 988 Query: 643 MMQ--------------------HAQNLEFEE-----AAQIRDQLHQLRELFIA 671 + A ++ E AA ++L ++R I Sbjct: 989 PNEQRIETVIDLNYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETIT 1042 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 96/300 (32%), Gaps = 36/300 (12%) Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G G + P L D+L + + +++ + + Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + K + QT+ SAT + + + Sbjct: 250 RMLDMGFEPQIR-----------------KIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292 Query: 409 VDQVVRPTGLLD--------PIIEVR---PVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 D G L+ I++V ++ L+ EI + ++ TKR Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKEN--KTIIFVETKR 350 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 +DLT + G +H D ER ++ + R G+ +L+ ++ GLD+ +V Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 410 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + S + IGR AR+ G A + A+ + + + Sbjct: 411 VINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 113/347 (32%), Gaps = 37/347 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P + P + Q ++++ + A+R + + +L +F + Sbjct: 189 PMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFGALCPASVAV 248 Query: 303 CSGIENYSRFLSGRGPGEP---PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G P L D+L A + + +++ + + M + Sbjct: 249 VQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRMLDMGFEPQI 308 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + R QT+ SAT + + D + G L Sbjct: 309 RKIVEQIRPDC-----------------QTLMWSATWPKEVRSLAEDFLKDYIQVNIGAL 351 Query: 420 DPIIEVRPV-------ATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHG 470 R V + ++ L E+ + + + L+ TK+ ++LT + +G Sbjct: 352 QLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNG 411 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D ER ++ + R G +LV ++ GLD+ ++ V D + Sbjct: 412 WPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYD-----YPH 466 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 I IGR AR+ G A + AK + + + Sbjct: 467 CSEDYIHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAI 513 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 89/534 (16%), Positives = 162/534 (30%), Gaps = 77/534 (14%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 +L+ L + + +++ + +++ A L E+++ Sbjct: 54 KLQGVLASVGEPRLHISAIDEARSWVARAIAEKS--VVVIVTATSREAQDLTAELRDMMG 111 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 + A P+ +T + S RL + + D+ Sbjct: 112 DA--------------VAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPI 157 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +VVA + L + + L D I RLAE+ Y D +RG F V Sbjct: 158 RIVVAPARSFIQPIMKGLGEREPIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAV 215 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPR 253 RG V+DIFP+ + ++ +R EL+ +E+ L F + + +YP Sbjct: 216 RGGVVDIFPS-TAELPVRAELWGDEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDD 274 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +A K+ L ++E G+E+ L Sbjct: 275 AVRARA------------------EKMARTHASNATLADALTKISEGVAVEGMESLIPVL 316 Query: 314 SGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMY---RGDRARKETLVEYGFRLP 369 P + P+ ++V + + + G P Sbjct: 317 FDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESP 376 Query: 370 SALDNRPLKFEEFEAL-APQTIYVSATPGNYELEK---------SGGDVVDQVVRPTGLL 419 + + L Q+ Y S E G + T L Sbjct: 377 IDTAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLEL 436 Query: 420 D--PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 D + + V+ +SE+ A R++ T LT A+ ++ E G V Sbjct: 437 DFSTGPQPKGKPGDVEKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTP-- 494 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS----LVAILDADKEG 527 D D G+ V+ +L GL +P V L+ + + D G Sbjct: 495 -DADPQ------NPSAPGKATVIRA--VLHGGLVIPHVDDARPLLVVAETDFTG 539 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 63/401 (15%), Positives = 123/401 (30%), Gaps = 37/401 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + + Q E M Sbjct: 715 VPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHFATFSERME----- 769 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G R LS + + L + +V +H + + Sbjct: 770 -GFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLVIVDEEQR 828 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + +SATP LE S + D T D Sbjct: 829 FGVEHKEHIKALRSHVDM--------LTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHP 880 Query: 424 EVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + V Q D + + IR+ + +V R E + +++ E R + H + Sbjct: 881 VLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQM 940 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + + E+DVLV ++ GLD+ + + + +A G + L Q G Sbjct: 941 NEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQ----LHQLRG 996 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + P ++ + ET R N + G G+ + D+ G Sbjct: 997 RVGRSRERG---YAYFLYP-PSQTLTETSYDRLSTIAQNNDLG---AGMAVAMKDLEMRG 1049 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N+ + G V D+ + + + + + Sbjct: 1050 AGNVLGAEQSG--------HIAGVGFDLYVRLVGEAVEAFK 1082 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 104/680 (15%), Positives = 202/680 (29%), Gaps = 96/680 (14%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 EA++ +E GL+ G L V+ SG+T A A RPT+ + + A + Sbjct: 12 TAEALQAVEAGLDAGE--DVTLAVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARS 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + V F D + ++ + ++ + R A ++ + Sbjct: 70 LAAYVGLAHVCRFPERKD-------------YPWREQAPDDAVVAQRCEALGRIVRGDNC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++VAS A+ P Y + VG I + +RL + Y A G FR Sbjct: 117 IMVASARALLRCVPPVESRYWEST-TFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFR 175 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 V G+ +++FPA+ + +R+E F +E++R+ TGQ + I+P E Sbjct: 176 VHGDTVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIFPCRELALTDE 234 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + + + LEM++ ++ + + Sbjct: 235 AVHNMHVAL-----------------YRASQDDSKLAALLEMVDARIVTPELDRFLPVMY 277 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK----ETLVEYGFRLPS 370 + ++ L+V+ E Y AR ++ + Sbjct: 278 -----GQTVSPLAHVSGKALVVLSEPRSLFDDCLRAYEDIEARAGEAGIDRLDGLYVRAQ 332 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-- 428 LD + + +L V+A + +G D + V + Sbjct: 333 QLDFGAQQRLNYVSLIRAGGAVTAELKIEQPAIAGSDNRFMTRVQEVVGKRYACVFAIPD 392 Query: 429 ----------ATQVDDLLSEIRQRAAINERVLVTTLTKR----------MAEDLTEYLEE 468 E A N V+ R +D + E Sbjct: 393 RGARESMELTFGDEGITFEESLTAAPENAGVI--GERVRVAAADSADRAARQDAHAAIRE 450 Query: 469 HG---ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 R L + + + G + L +G+ +P+ +L AD Sbjct: 451 RKADALNARSLEAGAAQAAAGAAVPTISRGRVTFVDA--ALPQGVVVPDANLAVFSIADL 508 Query: 526 EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + AR+ I + T + +E G Sbjct: 509 NARMDA---------NRARSRRKVDITQITFPFKPGDYVVHATHGIALFSEIARQEVGGK 559 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + A G P+ + D + + P + ++ L Sbjct: 560 ERDY-------------FLLEYADGDKLYVPLEQVDRITRYVGPDGDKPRLTRLNTADWT 606 Query: 646 HAQNLEFEEAAQIRDQLHQL 665 A N + A ++ L L Sbjct: 607 RATNKARKNAKKLAFDLVDL 626 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 118/400 (29%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ K + +++ T Q E E Sbjct: 676 PMDRLLCGDVGFGKTEVALRAAF----KCVDSGRQVMVLCPTTILAQQHYETFFERFAPF 731 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+E LS + V+ +H + + + Sbjct: 732 GLEVEV--LSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRF 789 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L N + + + +SATP ++ + V D + T Sbjct: 790 GVQHKEQLKNLREQID--------VLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPV 841 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 + V D++ + IR +V + + +D + E R H + Sbjct: 842 IVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMS 901 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ + + DVL+ ++ G+D + + I D+ + G + L Q GR Sbjct: 902 PREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ----LYQLKGR 957 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P E + E G+ + D+ G Sbjct: 958 VGRSATQ---AYAYFMFPGELPLTEEAT----ARLTALSEFQDLGSGMRIAMRDLEIRGA 1010 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + S +V D+ + L Q + E G Sbjct: 1011 GSLMGAEQHGNLS-------SVGFDLFTQMLGQAVAEARG 1043 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 92/497 (18%), Positives = 165/497 (33%), Gaps = 66/497 (13%) Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMM 158 + PS D +D ++ +++ R+ +L+ ++ +V ++ A+ P+ + Sbjct: 19 LFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTTLKALTEKIFSPESLKERT 78 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 + + R E+ Y R G F +RG ++DIF D +R+ELF Sbjct: 79 IEVRR--SASFYLSPERFVEMGYERTFTVQMPGEFSIRGGILDIFSPGYD-FPVRIELFG 135 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYP-------------KTHYVTPRERIVQAMEEIKE 265 E VE + FD T + + I P E + +A+ E ++ Sbjct: 136 EVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVRFTCENLEKALTEYRK 195 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-----------------------DLEMMNELGY 302 + +L E L ++ + +R D++ + E Sbjct: 196 IRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEERSLPLVDIDEIEEGEL 255 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 E+ G + DYL V+ I ++ K Sbjct: 256 VVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDAVLYVPVEKIDRVHRYIGDPSQVKLDR 315 Query: 362 VEYG---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + G L ++ + E L + V T + E T Sbjct: 316 LNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEKFAETFPYIETPD 375 Query: 419 LDPIIEVR-----------------PVATQVDDLLSEIRQRAAINERVLVTTLT----KR 457 IE + + L + ++V V T ++ Sbjct: 376 QQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQ 435 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLREGLDMPEVS 516 E+ E LE G RV L S ER EI+ L+ GE DV++G LL E ++ ++ Sbjct: 436 HYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLG 495 Query: 517 LVAILDADKEGFLRSER 533 LV I + K G + E+ Sbjct: 496 LVIIDEEQKFGVEQKEK 512 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 67/475 (14%), Positives = 149/475 (31%), Gaps = 59/475 (12%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 D +R L EL R + VRG ++ P + A E F +E Sbjct: 331 DIEKRVRELVELYLKREE---------VRGTLLPGDPELEEKFA---ETFP-YIET---- 373 Query: 228 DPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 P + + + + P + + + ++ A + Sbjct: 374 -PDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVL 432 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q + E + G + + SR L R + + L + VV +H + Sbjct: 433 ARQHYENFKERLEPFGVRVELLDSSRTLRERKE------ILEGLKKGEIDVVIGTHALLN 486 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + ++G L+ + +SATP L + Sbjct: 487 ERVEFSDLGLVIIDEEQKFGVEQKEKFKK--------MRLSVNVLSLSATPIPRTLHMAL 538 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTE 464 + D V +A ++L+ + + +V+ ++ E Sbjct: 539 SGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLE 598 Query: 465 YLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+ R+ H + +++ + G DVL+ ++ G+D+P + + + D Sbjct: 599 NLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDD 658 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 A + G + L Q GR R+ + + P + ++ + + H Sbjct: 659 AHRYGLAQ----LYQLRGRVGRSDRR---AFAYFLYPK------GVPKSALERLRVLKAH 705 Query: 583 GITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 GL + D+ G ++ + G ++ + + + L++ + Sbjct: 706 TGPGSGLQIAMKDMEMRGIGDVLGLEQHGN--------IISIGLKLYNEILRETV 752 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 131/430 (30%), Gaps = 42/430 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I+ A + + Q ++ + + Sbjct: 589 MDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQQHYNTFIQRLKDFP---- 644 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 L + L + +V +H + + + +G Sbjct: 645 --VRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDLGLLIIDEEQRFG 702 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIE 424 + + + ++ATP L S + D V +D I+ Sbjct: 703 VTHKEKIKKMRENID--------VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQ 754 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDT 482 + + + I + + +V D+ +++ H + Sbjct: 755 TYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVPGASVSFAHGQMSE 814 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E +I+ D GE DVLV ++ GLD+ + + I DAD+ G + L Q GR Sbjct: 815 RELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQ----LYQLRGRV 870 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + Y + K + E +R + + G G+ + D+ G Sbjct: 871 GRSSR---MAYAFLL-YRRDKLLKEVAEKRLAAIREFTDLG---SGIKIAMRDLEIRGAG 923 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ----HAQNL---EFEEA 655 +A+ V D+ K L + + EL+G + +L F Sbjct: 924 NLLGEAQSG-------HMAAVGYDLYCKMLNEAVKELKGEKEEDQFTTTMDLNIDAFIPE 976 Query: 656 AQIRDQLHQL 665 + I+++ +L Sbjct: 977 SYIKNEYQKL 986 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 116/319 (36%), Gaps = 23/319 (7%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF ++ + + + + G S KT + + + +V + ++ Sbjct: 3 AFLEPLEELADYQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYRVIVFS-SEEK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q Y E K P+ D + R+ K Sbjct: 62 AKQAYEEYKMLEEN---------------TFLYPAKDLLFYHADIKGAALTGKRMEVLKK 106 Query: 130 ML---ERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V V+ + A + GL + + + + G +ID + + L L Y R Sbjct: 107 LTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERES 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + + IYP Sbjct: 167 QIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 T V +E+ V E +E E +L E ++ F + + Sbjct: 226 ATENVEKKEQAVSFSEYFPKE--ESLFFFDEPVRLQETLEAVEKEYFHSFESRKNAGMTE 283 Query: 306 IENYSRFLSGRGPGEPPPT 324 + R + E T Sbjct: 284 EADEIRVFQTKEIIEKFNT 302 Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 129/410 (31%), Gaps = 61/410 (14%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + EE+ R ++ + + + + +E M ++ EN E Sbjct: 186 LTEEIPVRIELWGDEIDSIRSFDVESQRS--VENMEKVVIYPATEN-------VEKKEQA 236 Query: 323 PTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + +Y P + L DE + + + E+ G + E Sbjct: 237 VSFSEYFPKEESLFFFDEPVRLQETLEAVEKEYFHSFESRKNAGMTEEADEIRVFQTKEI 296 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 E + T G V D V P + L ++++ Sbjct: 297 IEKFNTRYGIGLTTLETRC---GGFKVRDVYSIQAAG------VNPYNNSFEMLTQDLKK 347 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 RV++ + ++ A+ L E L ++ Y +++R +R GE ++V Sbjct: 348 LKRQGYRVILVSGSRTRAKRLAEDLRDYDLSSFYS---------EDMVRTVRPGE--IMV 396 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 + EG + P + + I ++D G + +R + Sbjct: 397 VYGCVAEGYEYPMLKFMVISESDIFGKRKKKR----------------------RRKVYE 434 Query: 562 AKAIGETERRREKQQKYNEEHGITP-QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I E + +E HG+ QG+ K VD + + + A G + Sbjct: 435 GQKIQEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTR-DYMKISYADGGILYILATQM 493 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 D + A K+++L ++ Q++ + + + + Sbjct: 494 DLIQKYAGADAKPPKLNKLGTPQWNKTKS-------QVKKAVQVIAQDLV 536 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 112/276 (40%), Gaps = 21/276 (7%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + P+ + L+E + G + + + K + + + ++L + Sbjct: 3 EELFKHPKLLE-LQEAFKQGD-PVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEES 60 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM- 130 +LY + F P P+ +T ++ + + R A + + Sbjct: 61 RLYHDFPFFS--------------SAPLLEFPAWETLPSENIAPSPDTVGARYKALRQVS 106 Query: 131 LERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + ++++ + + + L P + + L L G +++RL E+ Y R+ A Sbjct: 107 ATFQPHIIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAAD 166 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG +IDIFP S R+E + +++E + +FDP+ + + T+ I P Sbjct: 167 KGEFAIRGGIIDIFPVAS-PDPFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEM 225 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 ++ + I + L + V+ ++ LE++ Sbjct: 226 ELIQQ--SSKLSTILDYLGPQTIVIFDDLLALEDRY 259 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 139/428 (32%), Gaps = 41/428 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCS 304 + + ++ A + L+ L Q + +E M+ Sbjct: 600 MDRLICGDVGYGKTEVAMRAAFKAVMDGHKQVALLVPTTVLAMQHYENFIERMSNFPVRI 659 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ LS + + + + ++ +H I + + + + Sbjct: 660 GV------LSRFRTPKEIRETLEQVAKGSIDILIGTHRLISKDVVFHDLGLIIIDEEHRF 713 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + I +SATP L S D V T D + Sbjct: 714 GVKAKEHLKKIKMGVDC--------ITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPI 765 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 ++ D + + + + + + V + ++E + R + H + Sbjct: 766 TTIISEPGDLVFKNALLRELSRDGQAYVIHNRVETIFGVASKIKELLPQARVVVGHGQMS 825 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + G D+LV ++ G+D+P + + I AD+ G L Q GR Sbjct: 826 ADEIDSVFHAFKSGAADILVATTIIESGIDIPNANTILINRADQFGLA----DLYQLRGR 881 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R Y + P++ K++ + R+R E G+ + D+ G Sbjct: 882 VGRWNRR---AYAYFLVPNL-KSLPQLARKRLHAL---AEACGYGGGMKLAMHDLEIRGA 934 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 NI T+ G + K L++ I L+G + + E +A Sbjct: 935 GNILGTEQSG--------HVSAIGFHFYCKLLRRTIQTLQGELSAGMVETKLEFHYDACL 986 Query: 658 IRDQLHQL 665 D ++++ Sbjct: 987 PEDYVNEV 994 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 106/304 (34%), Gaps = 17/304 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + G + R G P + D + + + + + Sbjct: 204 TRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI-RGVEICIATPGRLLDMLDS 262 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 R L E L + + K + QT+ SAT + + Sbjct: 263 NKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYL 322 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMA 459 D + G LD I+EV A + L +I + + +VL+ T TKR+A Sbjct: 323 NDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVA 382 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +D+T +L + G +H D ER ++ + R G+ ++V ++ G+D+ ++ V Sbjct: 383 DDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVF 442 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D F + + IGR R G A Y A+ + ++ Sbjct: 443 NYD-----FPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497 Query: 579 NEEH 582 E Sbjct: 498 KLEE 501 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 128/369 (34%), Gaps = 27/369 (7%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 I E L L G+ GS +F I + + + P +++ +K AA + ++ Sbjct: 6 SGLITEKEGVLPTETKTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDL 65 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDV 136 + F E+ V ++ + Y + + + +R + + + + Sbjct: 66 ESFIGEDRVLFYPASYKK-------------PYQHSQTDNANILLRAEVLQRFGKKGKPL 112 Query: 137 VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +V+ AI+ K L+L G +I + L E + R D G F V Sbjct: 113 CIVSYPEAIFEKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D+F + D R+E F EEVE + FD ++ + ++ +I P + Sbjct: 173 RGGIVDVFS-YAYDHPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDTLTK 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ + + +E +FD +E + Sbjct: 232 RQDFFSFTDKKTTVLIRKPGVLKQKIESLYKEAVLKFDT-----------LEGEIAQIPP 280 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 LF L + ++ I Q+G + D A L+++ A + + Sbjct: 281 ENLYVQSKELFGALEKHQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQPAFNKK 340 Query: 376 PLKFEEFEA 384 E A Sbjct: 341 FPLIIERLA 349 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 114/356 (32%), Gaps = 18/356 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + ++ + G P + D L + + I + Sbjct: 176 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD-LERGVEICIATPGRLIDFLEC 234 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMA 459 D + G L+ I++V + + L+ + + + E + +V TKR Sbjct: 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRC 354 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++LT + G +H D ER ++ + + G+ +L+ ++ GLD+ +V V Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + S I IGR AR+ G A + + R + Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN- 468 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + + + + + G+ L++ Sbjct: 469 PKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKR 524 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 106/298 (35%), Gaps = 17/298 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + ++ + G + + G P + D L + + I + Sbjct: 177 TRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRD-LERGVEICIATPGRLIDFLEV 235 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 236 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 295 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMA 459 D V G L+ I++V + + L+ + + A E + ++ TK+ Sbjct: 296 QDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRC 355 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++LT + G +H D ER ++ + R G+ +L+ ++ GLD+ +V V Sbjct: 356 DELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVI 415 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 D + S + IGR AR+ G A + A+ + + Sbjct: 416 NYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAI 468 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 104/289 (35%), Gaps = 34/289 (11%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G + P L D+L A + +++ + + M + Sbjct: 390 GGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQI 449 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K QT+ SAT + + + + + G L Sbjct: 450 R-----------------KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSL 492 Query: 420 D--------PIIEV---RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 + +++V ++ LLS+I + ++++ TKR ++L ++ Sbjct: 493 ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRS 552 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G R +H D ER ++R+ R G+ ++LV ++ GLD+ + V D + Sbjct: 553 FGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFD-----Y 607 Query: 529 LRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 ++ I IGR R+ G + + K AKA+ + R ++ Sbjct: 608 PQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEI 656 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 66/352 (18%), Positives = 116/352 (32%), Gaps = 21/352 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+ L + +VV + I K ++ E L Sbjct: 110 CGGQEYGRQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIED 169 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPV 428 E Q SAT + + + D ++ V Sbjct: 170 VETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASV 229 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + D L+ + + V+V TK E++ E L++HG R +H DI R I Sbjct: 230 HQKPDALIRVL--EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERI 287 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 I + G D+LV ++ GLD+ V+ V D + + + IGR R Sbjct: 288 IAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRS 342 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G IL+ + +I R+R ++ + +H I + + +I + Sbjct: 343 GVTILFVTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYS 402 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL----EGLMMQHAQNLEFEEA 655 K + I E D +D++ ++ E M + A + E A Sbjct: 403 YKRIVEE-YIKEHDVSAVDVAAALALLLHKDMPWRKELNMPKAASAFKEERA 453 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 100/306 (32%), Gaps = 25/306 (8%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++++ +E R + G + P L D + + + Sbjct: 253 SSQIYDEARKFSYRSNIKPCVVYGGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSL 312 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + M + + +P A QT+ SAT Sbjct: 313 EQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPAGKR-------------QTLMFSATF 359 Query: 397 GNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQ-VDDLLSEIRQRAAINERVL 450 + + + G + + I EV VA + D+L + Q + L Sbjct: 360 PKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQGKDPDGLAL 419 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR A+ L ++L + V +H D ER ++ R G +L+ + GL Sbjct: 420 VFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIATAVAARGL 479 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+P V V D + + IGR R G A + + ++ + + E Sbjct: 480 DIPNVKHVINFDLPSD-----IEEYVHRIGRTGRMGQPGSATSFFSEKNQNVVRDLVELL 534 Query: 570 RRREKQ 575 R ++ Sbjct: 535 RESKQA 540 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 17/309 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K L N++ + T+ + + G + + G P L D L Sbjct: 294 KRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRD-LER 352 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + + L E L + + K + QT+ Sbjct: 353 GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTL 412 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL--------LSEIRQR 442 +AT + + + + V G D ++ + + VD + L +I + Sbjct: 413 MFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRS 472 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++++ TKRM + L L +H D ER ++ + R G +LV Sbjct: 473 QEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVA 531 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ ++ +V D F + IGR R G A + Sbjct: 532 TDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 586 Query: 562 AKAIGETER 570 A + + Sbjct: 587 ASDLVKILE 595 >UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS Length = 578 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 39/325 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG-----IENYSRFLSGRGPGE 320 E+ + V++ + L Q + +F E ++ G +N S + Sbjct: 232 EIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIMMGCHLLIA 291 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + D + + + M + + + + Sbjct: 292 TPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQ--------- 342 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVD 433 QT+ SAT +G + + + G++ I + Sbjct: 343 ------HQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRR 396 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ +I + +A +V TKR A+ L YL E +H D +R + +RD + Sbjct: 397 KLI-DILKESADG--TIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFK 453 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ VL+ ++ GLD+ V V D ++ + IGR R NG+A Sbjct: 454 TGKMKVLIATSVASRGLDIKNVKHVVNYDMP-----KTIDDYVHRIGRTGRVGNNGRATS 508 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + D P A+ + + Sbjct: 509 FFD---PDQDSALASDLVKILEGSD 530 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 104/299 (34%), Gaps = 17/299 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + G + R G + D L +V+ I + Sbjct: 195 TRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRD-LSRGSEIVIATPGRLIDMLEI 253 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 254 GKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYL 313 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMA 459 D + G L+ I+EV + D L + + N + L+ TKRM Sbjct: 314 NDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMC 373 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +D+T+YL E G +H D D ER ++++ R G ++V ++ G+D+ ++ V Sbjct: 374 DDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVI 433 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + IGR R G AI + + + + R + Sbjct: 434 NYDMP-----GNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIP 487 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 104/643 (16%), Positives = 204/643 (31%), Gaps = 65/643 (10%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPE 99 +G +A R +++A ++ + F PE + + VS + P Sbjct: 44 SGMATRCRLAAEAFTQGRTVVLVARDREEYNSARALLTLFTPELSLADKSVSEPQWNSPC 103 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMM 158 +P + RL+A + + R +V SV S + D + Sbjct: 104 LTLPPL------SQWQDRASWSARLAALYGLAQGRPRCIVCSVESLLLRHIPLDFFAARN 157 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L L G +L + E Y R + G RG+++DIFP +R+E F Sbjct: 158 LDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGEMARRGDILDIFPTGHVK-PVRLEFFG 216 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + +FD + + + + P + + + R + Sbjct: 217 DTLDEMRVFDAESQRSLQGCDELVLLPASPLALDAKSL--------AAARERCDRMFAEG 268 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ E + ++ L P D+LP D L ++ Sbjct: 269 RISEN--------------ECYSFKKSLDGGGLGLLPGSVLASPSLFEDWLPKDSLWLLP 314 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + R R + +E + L+ A V A P Sbjct: 315 GESDSADA----LRDGRLNLKERLEAADAPLPQPASLALRKSSQPAPWNTFQRVYAEPLV 370 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV-TTLTKR 457 +E+ G D+ ++ + L P+ + Q L + +++ + ++++ + + Sbjct: 371 MGVEERGLDLPERPLHSFIDLFPLPGAQDRPWQ--HLAAGLKEWKSSRRQIVLSFSSGRS 428 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM----- 512 A+ L L E V L + ++ R G LV ++L G D+ Sbjct: 429 RAKFL--KLAEQDGIVPALRYAPEQRGLFALVSPFRSGAE--LVWDDVLVLGEDILYPKA 484 Query: 513 ---PEVSLVAILDADKEGFLRSERSLIQT---IGRAARNVNGKAILYGD---KITPSMAK 563 P VS D L+ L+ IGR A + + + S Sbjct: 485 EKTPRVSSRVFKGLDSFDDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSGRD 544 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + R Q++ G+ P +D L +A + K+ + D V Sbjct: 545 KLYVPADRLGLIQRFKGTEGVEPA------LDRLGGAAWVAGKEKAR--KAIEKIAADLV 596 Query: 624 PMDMSPKALQQKIHELEGLM-MQHAQNLEFEEAAQIRDQLHQL 665 M K + ++ G + + FEE + + Sbjct: 597 EMYAYRKVTKGFRYDPPGELYHEFEATFGFEETPDQAKAIQDV 639 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 129/445 (28%), Gaps = 44/445 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 ++ + R P V + ++ A + Q Q Sbjct: 637 QDVLDDMDRPR--PMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 694 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G LS P + A + ++ +H + + Sbjct: 695 TFRARLAGFPVNVG------LLSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLP 748 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + +G R L + ++ATP L+ S + + Sbjct: 749 NLTLLVLDEEQRFGVRHKEKLKAL--------KKNVDVLTLTATPIPRTLQLSMSGIREL 800 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + T D V + D++L ++ + +V + E + EY+ Sbjct: 801 SIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREGQVFWVYNRVQGLERVAEYVRGLV 860 Query: 471 ERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 R H + E + + GE DVLV +++ GLD P + + + A G Sbjct: 861 PDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGL 920 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + L Q GR R+ Y + P + E R + + G Sbjct: 921 GQ----LYQLRGRVGRSDRQ---AYAFFVVPDAERLTAVAEER----LRIILDMDYLGAG 969 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + D+ G + + V +D+ + L++ + L+G Sbjct: 970 FQVAMEDLRLRGAGNILGEVQSG-------HMCRVGLDLYLEMLEEAVGRLKGTPESLVS 1022 Query: 649 NLEF-------EEAAQIRDQLHQLR 666 E A+ I D +LR Sbjct: 1023 ETELTLGLPAHIPASYIDDGRERLR 1047 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 125/397 (31%), Gaps = 19/397 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 +NK ++ L+ + ++ E + + G+P L +V Sbjct: 70 DNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLN-VVPIYGGQPIERQLRALKGTVQVV 128 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + I I D L E L QTI SAT Sbjct: 129 IGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSAT 188 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVL 450 L+ + D + P IE + + D L + + +N E L Sbjct: 189 MPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELAL 248 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR +DL ++ G V LH D+ +R ++ R G DVL+ ++ G+ Sbjct: 249 VFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGI 308 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V +V D + + IGR AR GK++ + + I Sbjct: 309 DVDDVDIVFNYDVP-----QDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYA 363 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + + + + + + + E D S Sbjct: 364 KIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSESTSE 423 Query: 630 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 Q L + + +N AAQ +++ L+ Sbjct: 424 ITSIQVAAALLKMHLDSGKN-----AAQ-SEEIKPLQ 454 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/405 (15%), Positives = 116/405 (28%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A Q E + + Sbjct: 552 PMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHFNTLRERFADYPIHT 611 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L + L + VV +H + + + Sbjct: 612 A------LLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLIVIDEEQRF 665 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G + + + +SATP L + D + T + I Sbjct: 666 GVLQKEKWKEKFRFID--------VLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPI 717 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 E + I + +V R E + L+ ++ H + Sbjct: 718 ETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMK 777 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E++ G+ DVL+ +++ GLD+P + + I AD G L Q GR Sbjct: 778 KHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLA----DLYQLRGR 833 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P I ++R K + EH G + D+ G Sbjct: 834 VGRSNQ---KAYAYLLLPRDL-FIQSDAKKRIKAMQ---EHSQLGTGFQIALRDLEIRGA 886 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N+ T G ++ ++ K L++ I +++G + Sbjct: 887 GNLLGTSQSG--------HIASIGFELYCKLLKKAIQKIQGKETE 923 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 115/312 (36%), Gaps = 31/312 (9%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDG---LAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 ++ +++ D P L + L + + + SG++F +A+ + + P +V Sbjct: 27 EMTFSYEKWLDHP-----LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRGPLLV 81 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A N ++ ++ + P +P + + + Sbjct: 82 IAENIKKTNEIALGLECW---------------GSPYLILPEVEPVPAESL-PDPTFLAE 125 Query: 123 RLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RLS ++L+ +++ + A+ L P+L + L L V D++A++ +L Y Sbjct: 126 RLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKLVTAGY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R D RG F VRG +ID F +S LR+E + L FDP+T + + + Sbjct: 186 ERVDSVDCRGQFAVRGAIIDTFCWDS-CYPLRMEWEGNRLISLRQFDPITQRSFKPLAQ- 243 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 E ++++ + + L + + + + L + G Sbjct: 244 ----AHLCFFNLEDMLKSGASLHDYLPQAIPTFWSKSPEIPIPDVGIHFESHLFLDTPKG 299 Query: 302 YCSGIENYSRFL 313 E + Sbjct: 300 DWFYQERRWQLF 311 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 58/236 (24%), Gaps = 37/236 (15%) Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L + + V++ + L E L G Sbjct: 303 YQERRWQLFLEALGRWIEKQWEVVIFVNNEGEESRLKEILNNQGISTE------------ 350 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +L + L G PE L + DA+ G ++++ L+ R+ Sbjct: 351 -----------KILFSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILL-------RSQ 392 Query: 547 NGKAILYGDK--ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 K ++ K+ I +G N ++V++ Q Sbjct: 393 QKNDYFRAPLGSDIFEQWKEGDIVVHLQKGICKFKGIKTI--EGTNTEMVELEFDQQAKL 450 Query: 605 KTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + + + A+ L A + Sbjct: 451 YVPIDQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAER 506 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/424 (14%), Positives = 131/424 (30%), Gaps = 37/424 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I+ A ++ + Q ++ + E Sbjct: 590 MDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQQHYNTFVQRLKEFP---- 645 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 L + + ++ +H + + + +G Sbjct: 646 --VRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKDLGLLIIDEEQRFG 703 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + ++ATP L S + D V + + Sbjct: 704 VTHKEKIKKLKENID--------VLTLTATPIPRTLHMSLIGIRDMSVLEEAPNERMPIQ 755 Query: 426 RPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDT 482 V D+++ E I + A + +V D+ ++ V + H + Sbjct: 756 TYVMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKE 815 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E +I+ D G+ DVLV ++ GLD+P + + I DAD+ G + L Q GR Sbjct: 816 RELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLSQ----LYQLRGRV 871 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + Y + K + E +R + + G G+ + D+ G Sbjct: 872 GRSNR---MAYAFLL-YQRDKLLKEVAEKRLSAIREFTDLG---SGIKIAMRDLEIRGAG 924 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQNLEFEEAAQIRD 660 +A+ + V D+ K L + + +L+G ++ A I + Sbjct: 925 NLLGEAQSG-------HMEAVGYDLYCKMLNEAVRQLKGGPEAETFTTLIDLNVDAYIPE 977 Query: 661 QLHQ 664 + Sbjct: 978 YYIK 981 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 113/298 (37%), Gaps = 25/298 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + + G + K ++ + + +V + N+ A + Y E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYKLVVFS-NEEKAKKAYEEYLLF 72 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVV 137 E P+ D + + R+ +A+ E+ V Sbjct: 73 GEE---------------TYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117 Query: 138 VVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+ ++ A + G+ PD K +H+T +D + + L L Y R Q G F VR Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP ++++ +R+EL+ +E++ + +FD + + + I TIYP + + Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQR--TQFDLEMMNELGYCSGIENYSRF 312 V ++ E E ++L E + T+ + G E F Sbjct: 237 VSFLKYFPEN--ETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEEELRVF 292 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 19/315 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + +++ + T+ + + G + + G P L Sbjct: 498 RHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISC-TCLYGGAPKGPQLKELER 556 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + M + L E L + + K QT+ Sbjct: 557 GADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 616 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQ 441 +AT + + +V+ V G +D +EV P + + L +I + Sbjct: 617 MYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEK-ERRLEQILR 675 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V++ TKR+ + L + H +H D ER ++ R G+ VL+ Sbjct: 676 SQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLI 734 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 735 ATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWK 789 Query: 561 MAKAIGETERRREKQ 575 A + + +Q Sbjct: 790 YAPDLIKVLEGANQQ 804 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 102/315 (32%), Gaps = 19/315 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K + N ++ + T+ + + G + G P L D L Sbjct: 85 KRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRD-LDR 143 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + + L E L + + K + QT+ Sbjct: 144 GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 203 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQ 441 +AT + + +V+ V G +D +EV P + L +I + Sbjct: 204 MYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRL-EQILR 262 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++++ TK+M + L L +H D ER ++ R G VLV Sbjct: 263 SQEPGSKIIIFCSTKKMCDQLARNLT-RPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLV 321 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 322 ATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAK 376 Query: 561 MAKAIGETERRREKQ 575 A + + ++ Sbjct: 377 YASDLVKVLEGANQR 391 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 99/304 (32%), Gaps = 25/304 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE R + G G + P L D + + + Sbjct: 322 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 381 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + +P QT+ SAT Sbjct: 382 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP-------------KGVRQTMMFSATFPK 428 Query: 399 YELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDD--LLSEIRQRAAINERVLVT 452 + + + + G + + I + ++D L ++ + LV Sbjct: 429 EIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVF 488 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK+ A+ L ++L G +H D +R E + R G+ +LV + GLD+ Sbjct: 489 VETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI 548 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V V D + + IGR R N G A + ++ ++ K + + Sbjct: 549 SNVKHVINFDLPSD-----IEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVE 603 Query: 572 REKQ 575 +++ Sbjct: 604 AKQE 607 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 102/664 (15%), Positives = 192/664 (28%), Gaps = 106/664 (15%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP--TMVLAPNKTLA 70 P +A ++ E L QT+ G+ G + ++ RP VL A Sbjct: 5 PLQRTLDAFKKKITPPEKRLISQTIPGIAREGFSLL-PGLLRRAGRPEILWVLTSTPEKA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L E++ D P + + S + I R+ A + Sbjct: 64 LRLVEEIRS---------APLLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHALDRL 114 Query: 131 LER--RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 DVVV V+ + P L + L GM D ++++ L Y R Q Sbjct: 115 ASDTPPDVVVSPVVAVLRKTLSPPLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVPQVT 174 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F VRG ++D++ +R+E D E+ + FDP T + V + + P Sbjct: 175 APGEFSVRGALVDLYST-DRRRPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLPSHE 233 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++TP L ++ ++ L + GIE Sbjct: 234 WITPS-----------------------------PSSLDTPSRDWIDRHLSLPFPPGIER 264 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y D L++VD+ + + + L Sbjct: 265 YLPSFFSETAAPVLSR------PDILILVDDWKAVLDRTSDWISRIEEGWKVLPAEERSF 318 Query: 369 PSALDNRPLKF--EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 A D + + VS G P+ +D + Sbjct: 319 LPAPDAAFFLPKSRQEWESLLPCLTVSDEAPEGTPSLLGS-------VPSARIDRNLS-- 369 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 L+SEI +R R ++ T+ + + LE ++ + Sbjct: 370 --------LISEI-ERQPREWRTVIFCRTRGQMSRIGDMLEA---------GELPYITSF 411 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + + E ++P ++ + D S R+ Sbjct: 412 DSLAS-GAGRLPVTLLQGDVEEAFELPLDQILVLSDTWLFKKPVSRPPF--------RSF 462 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + +Y A G+ + G N G+ Sbjct: 463 STSTQVY---RRDRPTFADGDYVVHLHQGIGRFRGLQEVSVGAN--------RGEFAVIE 511 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 G + + D + P+ +I L G ++ ++R Q+ ++ Sbjct: 512 YLGGDRFYLSVDQMDQLLPYQGPEGSAPRIDRLGGKSWSQTKS-------RVRKQVEKIS 564 Query: 667 ELFI 670 + Sbjct: 565 ADLV 568 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAIN 446 + +SATP L+ + + T I+ + + + I + A Sbjct: 749 DRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDRERIREVIDRELARE 808 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V YL Y H + E ++ E +LV Sbjct: 809 GQVFFIHNRVSSIARWARYLAALFPEAGVAYAHGQMGEEEIEAVMGKFLRRESRILVSTT 868 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P + + I AD G L Q GR R Y ITPS +A Sbjct: 869 IVESGLDIPYANTILINRADMFGIAE----LYQLRGRVGRGGQQ---AYAYFITPSE-EA 920 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +GE R+R H G + D+ G + + V Sbjct: 921 LGEVARKRLHTL---TTHSGLGSGYQIAMRDLEIRGAGSLLGHQQ-------TGQVAMVG 970 Query: 625 MDMSPKALQQKIHELE 640 +D+ + +++ + L Sbjct: 971 LDLYLEMVEEAVAALS 986 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 6/136 (4%) Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEH 469 +D +I + + + + A ++V V T + E Sbjct: 616 ESPTPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHETFKNRFAGF 675 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGF 528 R+ L + E+ + LR GE D++VG LL ++ ++ L+ I + + G Sbjct: 676 PVRIESLSRMVSPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLIIDEEQRFGV 735 Query: 529 LRSERSLIQTIGRAAR 544 + +L R Sbjct: 736 RQK-ENLASRFPNVDR 750 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 97/304 (31%), Gaps = 25/304 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE R + G G + P L D + + + Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 340 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + +P T+ SAT Sbjct: 341 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP-------------KGVRHTMMFSATFPK 387 Query: 399 YELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDD--LLSEIRQRAAINERVLVT 452 + + + + G + + I + + D L ++ + LV Sbjct: 388 EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVF 447 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK+ A+ L ++L G +H D +R E + R G+ +LV + GLD+ Sbjct: 448 VETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI 507 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V V D + + IGR R N G A + ++ ++ K + + Sbjct: 508 SNVKHVINFDLPSD-----IEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 562 Query: 572 REKQ 575 +++ Sbjct: 563 AKQE 566 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 115/344 (33%), Gaps = 35/344 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P ++ + + I LA R++ + + + + + + Sbjct: 166 AFILPAFVHILAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIR---NTCAYG 222 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + Y+ P L D L + ++ +++ + + M + Sbjct: 223 GVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIR 282 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG-- 417 K E QT+ SAT + + G Sbjct: 283 -----------------KIVEQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSL 325 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + I + ++ +L +++ N+R++V TK+ A+ +T+ L G Sbjct: 326 TLTACRRIKQEIYLIEEHEKIANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGV 385 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +H D ER ++ D + G+ +L+ ++ GLD+ +V V D F Sbjct: 386 PALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGLDIKDVKYVVNFD-----FPNQ 440 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + IGR R +G + + +A+ + + R E+ Sbjct: 441 IEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKILRESEQ 484 >UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetazoa RepID=VASA_DROME Length = 661 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 107/322 (33%), Gaps = 39/322 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG-----E 320 EL + V++ + L Q + +F E ++G G ++ G Sbjct: 315 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIA 374 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + D V + + M + D R + Sbjct: 375 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE---------------DMRRIMTH 419 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVD 433 QT+ SAT +G + + V G++ I + Sbjct: 420 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 479 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ EI A +V TKR A+ L +L E +H D +R + +RD + Sbjct: 480 KLI-EILSEQADG--TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK 536 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VL+ ++ GLD+ + V D + IGR R NG+A Sbjct: 537 NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-----KIDDYVHRIGRTGRVGNNGRATS 591 Query: 553 YGDKITPSMAKAIGETERRREK 574 + D P +AI + + Sbjct: 592 FFD---PEKDRAIAADLVKILE 610 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 106/303 (34%), Gaps = 17/303 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + G + R G P + D L + + I Sbjct: 215 ILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRD-LSRGVEVCIATPGRLID 273 Query: 346 QIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + G R L E L + + K QT SAT + + Sbjct: 274 MLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLA 333 Query: 405 GGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLT 455 + D + G +D I+EV + D ++ + + + L+ T T Sbjct: 334 SDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLIFTGT 393 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR+A+++T +L + G +H D ER ++ + + G+ ++V ++ G+D+ ++ Sbjct: 394 KRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDI 453 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + V D + + + IGR R G AI + A+ + ++ Sbjct: 454 THVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQ 508 Query: 575 QQK 577 Q Sbjct: 509 QID 511 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 124/383 (32%), Gaps = 39/383 (10%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + E I L++ L+ + + + K A + ++L + A Sbjct: 5 FEKMLKSERILALQKALQHTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEA 64 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM- 130 +L+ ++ F P PS +T ++ + I R K + Sbjct: 65 RLFHDLSFF--------------TNCPTVDFPSWETLPSENVPPSPDIVGERYQLLKKIN 110 Query: 131 LERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 +++ S+ + + L P + K+ L L ++++L + Y R A Sbjct: 111 SSSEPHIILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASD 170 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+FP S R+E + +++E + ++DP+ V + + I P Sbjct: 171 KGEFAVRGGIIDVFPV-SSPDPYRLEFWGDDLESIRIYDPIGQISVRAVEQIDIAPGLEL 229 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + QA + L ++ ++ LE R + + + S IE + Sbjct: 230 ELLNQSNEQAS--FLDYLGPETLIIFDDLLALE-----DRYASLISLGANNKFFSSIEEF 282 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L+ P + + + ++ + + Sbjct: 283 LHLLT---------------PYQKMFWSQKPIEELSEVKHLDSKQSGYYSQTTIFHKLKF 327 Query: 370 SALDNRPLKFEEFEALAPQTIYV 392 + T Y Sbjct: 328 QMFNRDWTVKRWRHPFNTITNYF 350 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 122/369 (33%), Gaps = 34/369 (9%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + + + + +V +H I + + +G + Sbjct: 662 IGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDEEQRFGVKAK 721 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L + + + +SATP L S D V T D + + Sbjct: 722 EHLKKIKIGVDC--------LTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIIT 773 Query: 430 TQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERM 486 D ++ + + + + + V ++ ++ + R L H + E Sbjct: 774 EPSDQIIQNALLRELSRDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEID 833 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + G+ D+LV ++ G+D+P + + I AD G +L Q GR R Sbjct: 834 ATFHAFKSGQADILVATTIVENGVDIPNANTILIDRADHFGLA----ALYQLRGRVGRWN 889 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAK 605 Y + P++ + + E R+R + E G+ + D+ G +I Sbjct: 890 RR---AYAYFLVPNL-RVMPELTRKRLQAL---SEASGYGSGMKVAMRDLEIRGAGDILG 942 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQL 662 + G ++ + K L++ I L+G + + E A R D + Sbjct: 943 LEQSG--------HVSSIGFHLYCKMLKRTIQTLQGKLPSIVTETKIELAIDARLPEDYV 994 Query: 663 HQLRELFIA 671 +++ Sbjct: 995 NEVSLRMEV 1003 Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 402 EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLT----K 456 + + + Q + +D +I + + + + ++V V T Sbjct: 586 QLAAISSIKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAM 645 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEV 515 + ++ + + + L + E + + G D+++G + ++ E + ++ Sbjct: 646 QHFDNFLDRMANFPINIGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDL 705 Query: 516 SLVAILDADKEGFLRSERSLIQTIG 540 LV I + + G E IG Sbjct: 706 GLVIIDEEQRFGVKAKEHLKKIKIG 730 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 34/302 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M A + + +P +LD R Sbjct: 341 TPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLDGR----- 395 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDD 434 QT+ SAT + + + + + G + V Sbjct: 396 -------QTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPR 448 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL ++ +V KR A+ + ++L + +H D ER +R R Sbjct: 449 LLVKLLLEQGEG-LTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRS 507 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ +LV ++ GLD+P ++ V LD + + IGR R G A + Sbjct: 508 GQRPILVATDVAARGLDIPNITHVINLDMPC-----NIDDYVHRIGRTGRAGNTGLATSF 562 Query: 554 GDKITPSMAKAIGETERRREKQQKY---------NEEHGITPQGLNKKVVDILALGQNIA 604 ++ + + + + G NK V G Sbjct: 563 VNESNKPILRDLLAALEESGQDAPEWFQDMVKSCTASFGRYGNRFNKGGVSSSQRGNRGL 622 Query: 605 KT 606 + Sbjct: 623 HS 624 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/447 (14%), Positives = 139/447 (31%), Gaps = 58/447 (12%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I P + + A I + E + + Sbjct: 48 SQTGTGKTIAFAI-PAIEKIDIEQEKPTAQVLI------ICPTRELAQQGYAEIKKLTKY 100 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++++++ G S S+ P + D+L L + + V + + M Sbjct: 101 MPEIKVVDIYGGVSMERQISKLKKAHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEM 160 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 L + QT+ SAT + + + Sbjct: 161 -----------------LSMGFKEDIDTILKTAPDTRQTVLFSATMPPAIMNIIDTFLKN 203 Query: 411 QVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 ++ + + ++L+ + + ++ TKRM +DLT+ Sbjct: 204 PLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGS-KLTIIFCNTKRMVDDLTK 262 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L ++G LH DI ER ++ + + + +LV ++ G+D+ +V V D Sbjct: 263 FLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGIDVKDVEYVINYDIP 322 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 ++ I IGR AR G +I + + + Sbjct: 323 -----QNSEYYIHRIGRTARGGKTGTSITMTN--NRKQVTDLKMILKETNS--------- 366 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 K +DI +K ++ +N D L+ + E + Sbjct: 367 ------KIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKD-LGYSENQI 419 Query: 644 MQHAQNLEFEEAAQIRDQLHQLRELFI 670 + A NL F + ++ + ++ ++ I Sbjct: 420 AKAALNLYF---GETKENIVKIEDISI 443 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 38/337 (11%) Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 R+ G G + + P L D+L + + +++ + + Sbjct: 310 RSSRITNTCVYGGTQRGPQARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEAD 369 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + K QT+ SAT + Sbjct: 370 RMLDMGFEPQVR-----------------KIVSQIRPDRQTLMWSATWPKEVQHLARDIC 412 Query: 409 VD-QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLT 455 + V+ G + +EV + + LL+ ++ +A + L+ T Sbjct: 413 NEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALMQAASAATGGGWTAKTLIFCDT 472 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A+D+T L G +H D ER ++ + G +++ ++ GLD+ +V Sbjct: 473 KRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIMIATDVASRGLDVKDV 532 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 V D F + + IGR R +G A + +A+ + RE Sbjct: 533 KYVINYD-----FPGTIEDYVHRIGRTGRAGASGVAYSFFSPDKGKLARQLVNCL--REA 585 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Q E ++ G+ K +G Sbjct: 586 NQSVPEALETIAFANDRSNSGGKGRGKGNYGGKGRGF 622 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 35/311 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + +++ + + M + + Sbjct: 298 CPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLV----------------- 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD---------PIIEVRPVAT 430 QT+ SAT + + + + G +D + V + Sbjct: 341 SQIRPDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESE 400 Query: 431 QVDDLLSEIRQRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L + Q +VL+ TKR A+ LT+ L G +H D ER ++ Sbjct: 401 KKAKLKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVL 460 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + R G +++ ++ GLD+ +++ V D F I IGR R G Sbjct: 461 NEFRTGASPIMIATDVAARGLDIKDINFVINFD-----FPNQIEDYIHRIGRTGRAGATG 515 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++ + MA + + + +++ E ++PQ + N Sbjct: 516 VSLSFFTPDKYRMASDLIKVLKEAKQRVP-PELFKLSPQNKRMHPRNTGFRRNNPNSLPL 574 Query: 609 KGRGKSRPIVE 619 G ++ ++ Sbjct: 575 GGSNRAYRDLQ 585 >UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomycota RepID=DBP3_YEAST Length = 523 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 109/333 (32%), Gaps = 36/333 (10%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + + + + ++ G E + + P L D L Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEG 249 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + + +++ + + M + E +A QT+ Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNI----------------IRETDASKRQTLMF 293 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDDLLSEIRQRA 443 +AT E + + + + G D I+EV + LL +++ Sbjct: 294 TATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYH 353 Query: 444 ---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 NE+VL+ L K+ A + L+ +G V +H D+ +R + + + + G+ ++L Sbjct: 354 SGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLL 413 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P V V F + + IGR R G A + Sbjct: 414 LATDVAARGLDIPNVKTVIN-----LTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 +A + Q E+ KK Sbjct: 469 HLAGGLVNVL--NGANQPVPEDLIKFGTHTKKK 499 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 128/386 (33%), Gaps = 25/386 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + E ++ ++ ++ + +++ +E+ + G+P L Sbjct: 79 QKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVL--PVYGGQPIERQIRSLKR 136 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ + I + L E L + + QT+ Sbjct: 137 GIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTM 196 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQ-VDDLLSEIRQRAAIN 446 SAT L S + V + P I+ T+ D L I + Sbjct: 197 LFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLCRILDT-TDD 255 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++++ TK+ ++L L G LH D+ +R +++ R G+ D+LV ++ Sbjct: 256 CKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVA 315 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD+ ++ V D + S + IGR R G A+ + K I Sbjct: 316 ARGLDIDNITHVVNFDVPSD-----SESYVHRIGRTGRAGNTGVALTFITPREFRQLKLI 370 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + + + + + + + + V + + + PIVE Sbjct: 371 ERSIKTKIIRGTLPTDASVLERQREQIVSKMQTIL------EQDRYQDYLPIVETLEKDY 424 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLE 651 D +Q M + A+ LE Sbjct: 425 D-----VQDIAAAALKFMQEGAKALE 445 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 98/634 (15%), Positives = 202/634 (31%), Gaps = 97/634 (15%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 GV+ S ++ + V+ PN A + Y + E+ V ++ Sbjct: 25 GVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFY--------- 75 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGL-GDPDLYLK 156 P T A + + RL + +L+ D +++ + I P+ Y + Sbjct: 76 ----PMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYER 131 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 + ++V D + ++L Y N + G F +RG ++DI+ R++ Sbjct: 132 SVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIY-THDYKDPYRLDF 190 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F + +E + FD T + ++ I I P E QA+E+I + + + E Sbjct: 191 FGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKE 250 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + KL + DL + E + Y F + T+ D+ L++ Sbjct: 251 DKKL----------ETDLMHIEERKRMDSLSMYIEFF-----NDEVTTILDFSNPYDLIL 295 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 VD + + + G LK + IY + Sbjct: 296 VDSYKMELNEETTYQDLLTYSHTM---QGEAFIGLNFKVKLKELLKKNHLSFQIYSVSDK 352 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + +L +++V P ++ L+ I + N +L++T T Sbjct: 353 PSTDLG-------------------VLDVDPFVGHLEQLILFINEYNGFN--ILISTKTM 391 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E + E+L H + + VLV +L +D+ Sbjct: 392 VSFERIKEHLTNHKIS--------------YSVNQFKDAMV-VLVEEDLPGSFIDL-NHK 435 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 + + + + + R+V +A+ I + + Sbjct: 436 FIILTEDTILDTKKKAKVRY-------RSVINQAV------------KIRDISELQNGDY 476 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + GI K + + K P + D V S ++ K+ Sbjct: 477 VVHYDFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKL 536 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 +L + AQ++ ++ L + + Sbjct: 537 SKLNAKQWSKTK-------AQVKQKIKDLSDRLL 563 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/470 (16%), Positives = 148/470 (31%), Gaps = 53/470 (11%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 + + RL L YA+ QA F R +++ F + + +DE +++ D Sbjct: 555 IKDLSDRLLNL-YAKRHQAEGY-QFSPRTDMLTSFEKDFN--------YDETIDQQKAID 604 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + P + + ++ A + Q Sbjct: 605 A----VFEDMESSK--PMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQ 658 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + + G LS + + + + VV +H + Sbjct: 659 HYLTFKDRFEKYGGS------VALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDI 712 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + +G + + + T+ +SATP L+ + + Sbjct: 713 VFKDLGLFIIDEEQRFGVQHKEKIKEI--------KVNVDTLTLSATPIPRTLQMAMYGL 764 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLE 467 D + T L+ V + L+ E I + + +V E L+ Sbjct: 765 KDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQ 824 Query: 468 EHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 + R Y H + + + EFD+LV ++ G+D+P + + I DAD Sbjct: 825 QLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADH 884 Query: 526 EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 G + L Q GR R+ I Y + K + + ++R + + G Sbjct: 885 LGLAQ----LYQLRGRVGRSDR---IAYAYLMFDGY-KDVNDEAKKRLSVIEDFTDLG-- 934 Query: 586 PQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 G + D+ G +I + G D+V MD+ K L + Sbjct: 935 -SGFKIALRDLGIRGAGDILGEEQSGF--------IDSVGMDLYMKLLDE 975 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 103/307 (33%), Gaps = 27/307 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ + R ++ G G + P L D + + + Sbjct: 444 QIFNDARKFSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAK 503 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + P E QT+ SAT Sbjct: 504 LKYLILDEADRMLDMGFGPDIKKIVHELGTP-------------EKTERQTLMFSATFPE 550 Query: 399 YELEKSGGDVVDQVVRPTGLL-----DPIIEVRPV-ATQVDDLLSEIRQRAAINERVLVT 452 + +G + D + G + D V Q L +I + + + LV Sbjct: 551 EIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQKLCDILSESGAD-KTLVF 609 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 KR A+ L YL E G +H D ER E +RD + G+ +L+ ++ GLD+ Sbjct: 610 VEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAARGLDI 669 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI-TPSMAKAIGETER 570 P V V D +S + IGR R N GKA + + S+AK + Sbjct: 670 PNVKHVINYDLP-----QSIDEYVHRIGRTGRCGNLGKATSFFSEDGDGSLAKPLMRILV 724 Query: 571 RREKQQK 577 ++ Sbjct: 725 DAQQNIP 731 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 63/402 (15%), Positives = 128/402 (31%), Gaps = 37/402 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A Q + M + Sbjct: 571 VPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTFTQRM--GSFG 628 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E SRF + + E + + V+ +H + + + Sbjct: 629 VRVEMLSRFRTPKQQREIMERV----AEGKIDVLIGTHRILNPDVEFHDLGLLIIDEEQR 684 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + R + + +SATP L + D + + D + Sbjct: 685 FGVAQKEKIKQRSAGID--------VLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLP 736 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 VA D ++ E + + R+ + +L E G + H + Sbjct: 737 VETYVAEYDDGMVREALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRM 796 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ G+FDVL+ ++ GLD+P + + I A+ G + L Q G Sbjct: 797 TEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQ----LYQMRG 852 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y + + + E ++R + + E G G + D+ G Sbjct: 853 RVGRSSR---LAYAYFL-YKKDRVLSEVAQKRLQAIRDFTELG---AGFKIAMRDLEIRG 905 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 N+ + G + V D+ + L++ I+ L+ Sbjct: 906 AGNLLGAEQHG--------QITGVGFDLYCRLLEKTINTLQN 939 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 135/349 (38%), Gaps = 32/349 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ--RPTMVLA 64 + + Q + +R + + L G+TGS K + + +Q +P ++L Sbjct: 1 MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 N+ E+ F+P+ A+ P+S + + NE + R Sbjct: 61 VNRESIRAQRRELAHFYPDLAMR------------ELYPAS-LIHGQVDTRNEQVMAERA 107 Query: 125 SATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +A + ++ + ++ A+ A P+ ++ L L VG I+Q ++ +L + Y R Sbjct: 108 AALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +Q G VRG+++D+FP D +R+E FD ++ + FD T + + TI + I Sbjct: 168 TEQVDTLGQVAVRGDILDVFPINGKDS-VRIEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226 Query: 244 YP---------KTHYVTPRERIVQAMEEIKEELAARRKVLLENNK-----LLEEQRLTQR 289 P + + + ++E +K +N + L +E + Q Sbjct: 227 MPLAVPNQEISASLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLDQETMIQQA 286 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + L +++LG R P D L D +D Sbjct: 287 GETHLLTVSDLG-HPYFPQAPRIHVQVRAMAPYNKNTDLLQKDLKGWLD 334 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 101/341 (29%), Gaps = 64/341 (18%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 E +LF YL AD L V+DE + + +R L ++ Sbjct: 234 QEISASLFQYLSADQLAVLDEPVAFFEECKKSWGDNRE-----------FADQLLDQETM 282 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 ++ T+ P + + + + P D L + Sbjct: 283 IQQAGETHLLTVSDLGHP--------------YFPQAPRIHVQVRAMAPYNKNTDLLQKD 328 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ L+ T+ A L E L+ G + + G+F Sbjct: 329 LKGWLDQGIHPLIMMGTRDKAAGLAESLKGAGLPMAFA------------------GQFQ 370 Query: 499 VL------VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + V L G + + + ++D G + +R L +T G G A+ Sbjct: 371 GVPETGGQVFAGSLTNGFYFWDEKWLLLTESDIFG-AQKKRRLTKTKG------KGPALN 423 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 Y I KA + +Y I G+++ + + G + + G Sbjct: 424 YFSDI-----KAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGDKLHVPVEQVG 478 Query: 613 KSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 V + P M K Q+ + + + A L Sbjct: 479 LLHKYVGNEGTPPKLSNMGRKDWQKATRKAQKAITILATEL 519 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 107/326 (32%), Gaps = 37/326 (11%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----LGYCSGIENYSRFLSG 315 + + E+ + +++ + L Q + +F + G +N S Sbjct: 1078 KGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESITKGC 1137 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D++ + D V + + M + + + Sbjct: 1138 HILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTM------- 1190 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVAT 430 QT+ SAT +G + D V G++ D + V Sbjct: 1191 --------RKEHQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDK 1242 Query: 431 -QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L EI + A +V TKR A+ L + E +H D +R + + Sbjct: 1243 FNKRAKLMEILRDGADG--TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQAL 1300 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R+ + G+ VL+ ++ GLD+ VS V D + + IGR R NG Sbjct: 1301 REFKSGKMKVLIATSVASRGLDIKNVSHVINYDMPS-----TIDDYVHRIGRTGRVGNNG 1355 Query: 549 KAILYGDKITPSMAKAIGETERRREK 574 +A + D +A+ + + Sbjct: 1356 RATSFFD---SDKDRALAGDLVKILE 1378 >UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE40_9ALVE Length = 695 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 26/265 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + M + + +PS+ D R Sbjct: 346 TPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSRDGR----- 400 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 Q+ SAT + + + D + G + I+ +++ Sbjct: 401 -------QSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLR 453 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 DL + + LV TKR A+++ L +H D ER E ++ + Sbjct: 454 DLY-RVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFK 512 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 GE +LV ++ GLD+ V+LV D + + IGR R N G AI Sbjct: 513 SGELPILVATDVAARGLDISHVNLVINYDLP-----NNIDDYVHRIGRTGRAGNLGTAIA 567 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + ++ + + + + +++ Sbjct: 568 FVNEGSKPILRDLWTLLEENKQEIP 592 >UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA Length = 770 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 103/327 (31%), Gaps = 37/327 (11%) Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 ++ G + P L D++ + + V + + M Sbjct: 421 PVVAYGGTSMNHQIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMG 480 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVV 413 + + +PS D T+ SAT + + + D + Sbjct: 481 FETEIRKLASSPGMPSKSDR-------------HTLMFSATFPDEIQRLAHDFLREDFLF 527 Query: 414 RPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I + LL I A R LV TKR A+ L L Sbjct: 528 LTVGRVGGACTDVTQSIIQVDQDDKRAKLLELISDVAETRSRTLVFVETKRGADFLACML 587 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G +H D ER + +RD + +L+ ++ GLD+P+V V D KE Sbjct: 588 SQEGCPTTSIHGDRLQQEREQALRDFKSAVCPILIATSVAARGLDIPKVEHVINYDMPKE 647 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGD-----KITPSMAKAIGETERRREKQQKYNE 580 + IGR R N G+A + D ++ S+ K + E ++ + Sbjct: 648 -----IDEYVHRIGRTGRCGNLGRATTFYDNNKDGELARSLVKILSEAQQEVPGWLEECA 702 Query: 581 EHGITPQGLNKK----VVDILALGQNI 603 E K+ D G Sbjct: 703 E-SAVGSSFGKEGGFGGRDFRKRGGRN 728 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 127/426 (29%), Gaps = 40/426 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + + E + Sbjct: 603 PMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMV 662 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 N G L A + V+ +H + + + + Sbjct: 663 DAVN------RFKSGAKQKETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRF 716 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 G L + + + ++ATP L S + + T D + Sbjct: 717 GVEHKERLKHLRATVD--------VLTMTATPIPRTLHASLLGIREISNLETPPADRQPV 768 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 E L + I + +V + ++ +E + H +D Sbjct: 769 ETHITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVGHGQMD 828 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + + E D+LV ++ GLD+P + + I +AD G L Q GR Sbjct: 829 AHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIFIDEADTYGLA----DLHQLRGR 884 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y I + K + T +RR K + E G G + D+ G Sbjct: 885 VGRSKHR---AYAYFIV-NPLKLLNPTAQRRLKAIEEFTELG---AGFKIAMRDLEIRGA 937 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQ 657 NI + G + ++ + L+ + L+ + A ++ + + Sbjct: 938 GNILGGEQSG--------HIAAIGYELYCQLLENAVRALKHQPPKVAVDVVVDLPWPSYL 989 Query: 658 IRDQLH 663 RD + Sbjct: 990 PRDYVQ 995 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 93/313 (29%), Gaps = 24/313 (7%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + L G T+ G GS A + A+++ +V+ P+ +M F Sbjct: 29 EMRAALAAG-RSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVEVEPWAEDMASFLG 87 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 + + T E VVV + Sbjct: 88 TRPAVFEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGG--------AEGPPKVVVCGI 139 Query: 143 SAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 SA+ L G I++ + L Y R D G F RG + D Sbjct: 140 SAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICD 199 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 IFP +S R+E F +EVE L F + + + R T+ P + Sbjct: 200 IFPPDS-PDPFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTLLPTDQGTAGARPAKGHLA 258 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L+E + L ++ + E ++ E + G + Sbjct: 259 DYL--------PPDSWVVLIEPRDLREQAKHFHERVSTTDGLHTTEQ-----AFAGLMKL 305 Query: 322 PPTLFDYLPADGL 334 P + LP + Sbjct: 306 PSVVLSALPRPSV 318 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 32/303 (10%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 ++ G + + P L D++ + + ++ + + M Sbjct: 490 IRPVVAYGGTSTNYQLKELQKGCHLLIATPGRLMDFINRGKIGLSSVQYIILDEADRMLD 549 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQ 411 + + +P+ + T+ SAT + + + + D Sbjct: 550 MGFETEIRKLVDSPGMPAKNER-------------HTLMFSATFPDEIQKLAHDFLREDF 596 Query: 412 VVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + G + ++ + + L+ + A R LV TKR A+ L Sbjct: 597 LFLTVGRIGGACSDVTQVVLQVDQGDKRNKLIELLADVADTGSRTLVFVETKRSADFLAC 656 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + G +H D ER E +RD + G+ +LV ++ GLD+P+V V D Sbjct: 657 SLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCPILVATSVAARGLDIPKVEHVVNYDLP 716 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDK-----ITPSMAKAIGETERRREKQQKY 578 E + IGR R N G+A + D + S+ K + ++ + + Sbjct: 717 SE-----VDEYVHRIGRTGRCGNLGRATSFYDDSANASLARSLVKILADSIQEVPSWLEE 771 Query: 579 NEE 581 E Sbjct: 772 CAE 774 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 34/264 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + M + K Sbjct: 257 CPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQL-----------------KKII 299 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QT+ SAT + + + V G ++ I+ V + Sbjct: 300 VNTNPDRQTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKA 359 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L + ++ NE+V++ TKRM ++L + L G + +H D R II D Sbjct: 360 NKLHESLNEKK--NEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDF 417 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKA 550 R G ++L+ ++ GLD+ V+LV D F + + IGR AR G + Sbjct: 418 RSGYKNILIATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTARGDVTEGLS 472 Query: 551 ILYGDKITPSMAKAIGETERRREK 574 + + AK + + + + Sbjct: 473 HSFFTSENSACAKELVKILKEANQ 496 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/447 (15%), Positives = 144/447 (32%), Gaps = 36/447 (8%) Query: 22 RRLEEGLEDGL-AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L LED L G+ S +++ + + ++ + + + A Y ++ + Sbjct: 17 KGLAALLEDSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 + + +F S Y + E +R + + + VV Sbjct: 77 NGDEHILFFPSSYRRAVKYGQ-------------KDAANEILRTEVLSRLQKGDPLCVVT 123 Query: 141 SVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ ++ + L L VG +D I LA + D ++ G + VRG + Sbjct: 124 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 183 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-- 257 ID+F S+ R++ F +EV+ + F+ I P+ + + Sbjct: 184 IDVFSFASE-YPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADKSGVSFF 242 Query: 258 -----QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYSR 311 + + +K+ L R ++ + + L Q L E+MN EL G E R Sbjct: 243 EFIPRETVLAMKDFLWVRERIQVVREEALSPQALAAYEGEKTELMNLELKLIDGAEFTVR 302 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L + P L + + + G+ L Sbjct: 303 ALDFKRIEFGNKPT--GTPQATLAFDTTVQPIFHKNFDLV---STSFTDYQKRGYTLYIC 357 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELE--KSGGDVVDQVVRPTGLLDP-----IIE 424 D+ + + +++ P N L + + + D + Sbjct: 358 TDSEKQAKRLKDIFEERGDHITFIPVNKTLHEGFTDNVLKSCFFTDHQIFDRFHKYNLRS 417 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLV 451 + + +V L E+ Q + V + Sbjct: 418 DKARSGKVALTLKELSQFEPGDFVVHI 444 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 136/415 (32%), Gaps = 39/415 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + + P V + I+ A + Q Sbjct: 566 ATQDAKADMES--DRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQH 623 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 Q E + + + ++ SR + + L + ++ +H I + Sbjct: 624 FQTFSERLKD--FPCKVDYLSR----ARSAKDVSRIVKELADGKINILVGTHKIIGKSVK 677 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + ++G + L + T+ ++ATP L+ S Sbjct: 678 FKDLGLLIIDEEQKFGVSVKEKL--------RQMKVNVDTLTMTATPIPRTLQFSLMGAR 729 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D V T + V T +D+++E I + N +V + +L ++ Sbjct: 730 DLSVIQTPPPNRYPIQTEVHTFNEDIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIKR 789 Query: 469 HGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R H ++ + +II D ++DVL+ ++ G+D+P + + I A Sbjct: 790 NIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNF 849 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P + E +RR + + + G Sbjct: 850 GLS----DLHQMRGRVGRSNK---KAFCYLLAPPLTSLTPE-AKRRLQAIENFSDLG--- 898 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 G++ + D+ G N+ + G ++ + K L + + EL+ Sbjct: 899 SGIHIAMQDLDIRGAGNMLGAEQSGF--------IADLGYETYQKILAEAVKELK 945 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 102/322 (31%), Gaps = 17/322 (5%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + I ++ + L E L + + + Sbjct: 124 LHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAER 183 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEIRQ 441 QT++ SAT E G + V E + L+ I + Sbjct: 184 QTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILK 243 Query: 442 RA----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ER+LV T TK A+ + + L + G +H + +R + + + + Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +L+ ++ G+D+P VS V + + IGR AR +G AI + + Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELP-----NVPEQYVHRIGRTARAGKDGVAIAFCAE 358 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K I + + E +G+ + G I + Sbjct: 359 DERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTN 418 Query: 617 IVEPDNVPMDMSPKALQQKIHE 638 +P + ++ + + Sbjct: 419 RSKPQGGNPQSAGGPVENPVKK 440 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 126/404 (31%), Gaps = 35/404 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + M++ Sbjct: 547 PMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSFSQRMSDFPIK- 605 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + + + +V +H + + + + + Sbjct: 606 -----IATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQKDINFQKLGLLVVDEEQRF 660 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G AL + + + +SATP L S + D T + Sbjct: 661 GVESKEALKRMRVNVD--------ILSMSATPIPRTLYLSMTGLRDFSTILTAPHNRKPV 712 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + D+++ IR+ +V + E++ L+ L H +D Sbjct: 713 RTIVTKENDEIIEVAIRRELERGGQVYYLHNRVKTIENVALKLKRQFPEANILIGHGQMD 772 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ + G+ +LV ++ G+D+ + + I AD+ G SL Q GR Sbjct: 773 EEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVIDRADRFGLS----SLYQLRGR 828 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P +AI + + R + +H G + D+ G Sbjct: 829 VGRDHRQ---AYCYLLMPR-DEAIMDNAKERLSALR---KHTHPGAGFKLAMRDLEIRGA 881 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + V ++ + L++ + +L+G + Q Sbjct: 882 GNMLGSQQSG-------HIAAVGFELYCQLLKKSVEDLKGSIHQ 918 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 87/217 (40%), Gaps = 8/217 (3%) Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE---HIEQMRLSATKAMLE- 132 + F + E + + YQ + +P+ D + + + ++ I+ R +L+ Sbjct: 45 LCVFETSSKAESCFNEFKKYQSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQLLQN 104 Query: 133 -RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQ 189 V++ SV+++ + P L L L + + E+ + Q Sbjct: 105 RGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSL 164 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG ++D+F +R++ FD+E++ L LFD + + ++ + + P Sbjct: 165 PGEFSLRGGILDVFSP-DQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVEKC 223 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 I++ ++ K + + + E+ +L Sbjct: 224 GLEPRGILEYIKGFKLCVVEEESIDRHLERYQEKVQL 260 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 183/570 (32%), Gaps = 111/570 (19%) Query: 52 VIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 + +L++P +++ P + A L ++ F Y PS D F + Sbjct: 8 LKLNLEKPVLIVVPTEYEAQLLSQKLNAF--------------------YFPSHDVFPFE 47 Query: 112 DASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQR 170 + +V+ + R+ +L +V+V ++ AI P + L G + Sbjct: 48 EVAVSFEVRCRRIEILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEVFHNP 107 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + L Y R G F VRG+VID F D+ +RVELFD+ +E + FD Sbjct: 108 E--ETMLNLGYDRTYIVRTGGEFSVRGDVIDFFGPLYDN-PVRVELFDQTIEAIRCFDAS 164 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI----------------------KEELA 268 T + V + + P Y+ ++ +EE A Sbjct: 165 TQRSVFKVEEAFLLPVREYLCNEHLFDTVPAKLGSNSTILDYSDFEIFVAEFDRCQEEFA 224 Query: 269 ARRKVLLENNKLLEEQRLTQRTQ------------------------------------- 291 R + E + + + + +Q Sbjct: 225 KREREAREMLEKKQIEDYVENSQISFSSLVKRIEFFKPLEIDLNTLKILPQTSQKSRDQI 284 Query: 292 --FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL----PADGLLVVDESHVTIP 345 FD E + E + + G P +Y + V E I Sbjct: 285 PIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRYEDSTVYVPVERIHKIH 344 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + G R R + + R+ N K EE + +S + E Sbjct: 345 KYIGDTRNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSLPGDPELEK 404 Query: 406 GDV-------VDQVVRPT----------GLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 D + +D ++ + + L + ++ Sbjct: 405 RFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAFKCVVSGKQ 464 Query: 449 VLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI- 503 V V T ++ + T+ + G +VR L I T+ + EI+ L G+ DV++G Sbjct: 465 VAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGKIDVIIGTH 524 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSER 533 LL+ + ++ LV I + G + E+ Sbjct: 525 ALLQNNVRFSDLGLVIIDEEQSFGVEQKEK 554 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 112/341 (32%), Gaps = 31/341 (9%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 R L + D L + V+ +H + + +G Sbjct: 494 RLLDRSISTIMKKEILDGLFRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKE 553 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + +SATP L + + D V T + + + VA Sbjct: 554 KFKQL--------RTNVNVLSLSATPIPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAK 605 Query: 431 QVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERME 487 + L+ + + +V+ +D+ + L+ + + H + + E Sbjct: 606 YSNQLVRGAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTE 665 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 +R + DV++ ++L G+D+P + + + D+ + G + L Q GR R+ Sbjct: 666 AVRSFYEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQ----LYQLRGRVGRSTK 721 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + S E + ++ + ++ + G + D+ G Sbjct: 722 R---AFAYFLHDS------EISEKALQRLQAIKQLTGSGSGFQLALRDMQIRGVGSVFGF 772 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + ++V +++ + + Q++ ++ + + Sbjct: 773 EQHGN-------INDVGLNLYLEIMNQQLKGIKEEKSESRK 806 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/454 (15%), Positives = 142/454 (31%), Gaps = 47/454 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 +++ ++ + P + + ++ A Sbjct: 556 DQLTSIASIKADMQRAR---------PMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVAV 606 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q + +E M E + I SRF + + E + + + +V Sbjct: 607 LVPTTILAEQHYRSFIERMAE--FPCDIAKLSRFCTSQEEREA----LKGIKSGKVDIVV 660 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H Q + + +G + L + +SATP Sbjct: 661 GTHRLASQDVDFHNLGLVIIDEEQRFGVDVKERLKAL--------KATVDVLTLSATPIP 712 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKR 457 L S V D + D + V +DL+ + + ++ Sbjct: 713 RTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNRVN 772 Query: 458 MAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E + L + R H ++ E +++ D G+FD+L+ ++ GLD+P Sbjct: 773 DIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNA 832 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I +A++ G L Q GR R N +A Y + K+I RR + Sbjct: 833 NTIFINEAERYGLA----DLHQLRGRVGRYKN-RAHCY---LLIDSNKSITPNAARRLRA 884 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + E G G + D+ G + V ++ + L+ Sbjct: 885 IEEFSEMG---AGFQISMRDLEIRGAGNLLGTQQSG-------HIAAVGYELYCQLLENA 934 Query: 636 IHELEGLM--MQHAQNLEFE-EAAQIRDQLHQLR 666 + L+ Q A +L EA D + +R Sbjct: 935 VRSLQRQPPKQQLAVDLNLPGEAFLPSDYVDDMR 968 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 27/240 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + + T+ GV GS A + + P + + P + A L Sbjct: 22 IAQLAGFAEVVAAMSR-HEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADDLA 80 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F Q +PS ++ I + + RL K +L R Sbjct: 81 IDIALF--------------RSQGILPLPSFESAIVAELGRD-DAFGPRLRTLKELLVAR 125 Query: 135 ---------DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +VV S+ ++ ++ + ++ LR L E Y Sbjct: 126 ENPRAAATLQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGYEAT 185 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 G F RG +ID+F A R+ELFD+EVE + FD T + + + I Sbjct: 186 TSVQLPGEFCHRGGIIDLF-AHDWQRPARIELFDDEVESIRQFDVATQRSLGALDWVEIT 244 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 50/448 (11%), Positives = 121/448 (27%), Gaps = 77/448 (17%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + + V I P ++ ++ E R ++ + Sbjct: 152 REVLAASSRRVRKQESLEIDPFLRWLVEHGYEATTSVQLPGEFCHRGGIIDLFAHDWQRP 211 Query: 285 RLTQRTQFDLEMMNEL----GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + ++E + + G ++ + + DYLP + +++ Sbjct: 212 ARIELFDDEVESIRQFDVATQRSLGALDWVEITAIPAANLAGGVIADYLPPNSRILLFSP 271 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + ++ R+ E + + S+L + + + A + Sbjct: 272 DRLSDEGRALH--ARSTAEAQLMSVAEVLSSLSSFGIATADGIAAGSLGVPWHM------ 323 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 P+ V + + + ++ A +E V++ T T+ + Sbjct: 324 --------------------PVESVEQFSGDLTKVRDQLGDLAGDHE-VMIITPTEAEVQ 362 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L E G ++G LREG +P+ L+ I Sbjct: 363 RLREIFATTSLAAT--------------------GRLSYVIGT--LREGFRVPDEKLIII 400 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + R + +G+A + D + + R K E Sbjct: 401 TGGELFHRGELRRLPRRRLGKA-------IDSFLDLREGDLVVHLAHGIG-RFAGIKLLE 452 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + L + G P V D V + + + ++ Sbjct: 453 RGETSEEHLEIEFD--------------GGTRIYVPAVRIDLVQKYVGGTKTRPSLAKIG 498 Query: 641 GLMMQHAQNLEFEEAAQIRDQLHQLREL 668 G + A + ++ +L+ + Sbjct: 499 GKTWLKQKKAAESAVADLAVEMLELQAM 526 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 93/513 (18%), Positives = 172/513 (33%), Gaps = 66/513 (12%) Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 + + + + PS D +D ++ I+ R+ +L ++ + ++ Sbjct: 3 EILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLK 62 Query: 144 AIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 A+ PD + L +T + RL E+ Y R G F +RG++IDI Sbjct: 63 ALTEKVFSPDFLRENSLMITRSTKLTLS--PERLVEMGYERVFTVQNVGEFAIRGDIIDI 120 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP--------------KTH 248 + +D +R+ELF +E+E + F T + + + I P KT Sbjct: 121 YSPGND-FPVRIELFGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTD 179 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM------------ 296 E + + ++E ++ R +L E ++R+ + ++E Sbjct: 180 VRFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKK 239 Query: 297 ----------MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIP 345 + E G E+ G + DYL V+ I Sbjct: 240 ESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKID 299 Query: 346 QIGGMYRGDRARKETLVEYG---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 ++ K + G L ++ K E L + + E Sbjct: 300 RVHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPE 359 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVR-----------------PVATQVDDLLSEIRQRAAI 445 T IE + + L + Sbjct: 360 LEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVS 419 Query: 446 NERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++V V T ++ E+ E +E G +V L S E+ EII L+ GE D+++ Sbjct: 420 GKQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIII 479 Query: 502 GI-NLLREGLDMPEVSLVAILDADKEGFLRSER 533 G +LL E ++ ++ LV I + K G + ER Sbjct: 480 GTHSLLNERIEFSDLGLVIIDEEQKFGVEQKER 512 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 132/433 (30%), Gaps = 43/433 (9%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P Q + + + P + + + ++ A + Sbjct: 374 PDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLA 433 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + E M G + + SR + + ++ +H + + Sbjct: 434 RQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKK------GEIDIIIGTHSLLNE 487 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + ++G L+ + +SATP L + Sbjct: 488 RIEFSDLGLVIIDEEQKFGVEQKERFKKL--------RLSVNVLTLSATPIPRTLHMALS 539 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D V + VA DDL+ + + +V+ ++ E Sbjct: 540 GMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEK 599 Query: 466 LEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+ + H + I+ + G DVL+ ++ G+D+P + + + DA Sbjct: 600 LKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDA 659 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + G + L Q GR R+ + + P R ++ K + + Sbjct: 660 HRYGLSQ----LYQLRGRVGRSDRR---AFAYFLYPKGTP------RSALERLKVLKSYT 706 Query: 584 ITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 GL + D+ G ++ + G S V + + + L++ I + Sbjct: 707 GFGSGLQIALKDMELRGVGDVLGLEQHGNVVS--------VGLKLYNEILKETITRFKER 758 Query: 643 --MMQHAQNLEFE 653 +H+ N+E E Sbjct: 759 RIEKKHSVNVEIE 771 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 104/318 (32%), Gaps = 37/318 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + ++ + + M + +V Sbjct: 127 TPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVL----------------- 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVD 433 +F QT+ SAT L S + TG I + D Sbjct: 170 KFVPKDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYD 229 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +L+ + R +LV TKR A+ + + L+E G +H D+ +R +I R Sbjct: 230 ELIDQFLARK---GSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFR 286 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +L+ ++ GLD+P + V D + + IGR AR G A+ Sbjct: 287 KGLKRILIATDVAARGLDIPLIQHVINYDLP-----QVPEDYVHRIGRTARAGSEGSALT 341 Query: 553 YGDKITPSM----AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + SM K I + + + ++ +G N K ++ K + Sbjct: 342 FLTPDDRSMWNSINKLIDPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGRQ 401 Query: 609 KGRGKSRPIVEPDNVPMD 626 R + + Sbjct: 402 DRSSSFRNKPKSYDKSRS 419 >UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWX2_PHYIN Length = 546 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 17/276 (6%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-G 348 T+ + G + + G + D L + + I + Sbjct: 225 TRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIAD-LRRGVEICICTPGRMIDMLSM 283 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K QT+ SAT + + + Sbjct: 284 GKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALANDFL 343 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 D + G LD I+EV + L +R R+++ TKR A+ Sbjct: 344 TDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHLRDIYE-GGRIIIFCETKRGAD 402 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +L+ L + +H + ER ++R+ + G +LV ++ GLD+ ++ V Sbjct: 403 ELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVVN 462 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 D ++ I IGR AR G +I + Sbjct: 463 FDMP-----KNIEDYIHRIGRTARAGNKGTSISFFT 493 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 116/297 (39%), Gaps = 18/297 (6%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I ++ LQ+P +++A ++ A Q+Y + E F EN V +F Sbjct: 24 KNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEENMVHFF--- 80 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD 152 P + A + RL A +L ++ +V+++ A+ Sbjct: 81 ----------PVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAA 130 Query: 153 L-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + L L V + + I L Y R+D G F +RG+++DI+P Sbjct: 131 IKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIA-YP 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R+E FD+E++ + F+ ++ + ++ I P + + I + L Sbjct: 190 YRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADDQ-LDKLYQNEDYTTILDYLTESG 248 Query: 272 KVLLENNKLLEEQ--RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + ++ + + + ++ R + L + +++ + + +LF Sbjct: 249 IICFDDIRAIRQNIVQIDARNRDYLAHETSTNIKNSRLDFTSIFNQIVQAKIYSSLF 305 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/459 (14%), Positives = 139/459 (30%), Gaps = 48/459 (10%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 ++++ + + P + + ++ A Sbjct: 564 PDQIKAIREIKLDMQK---------EKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVA 614 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + Q LE + + L + + L + +V Sbjct: 615 FLVPTTILAEQHYATMLERFKDFPVNVAM------LCRFQTEKEADEIATNLSNGKIDIV 668 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + +G + L + + ++ATP Sbjct: 669 VGTHRILSRDIKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNID--------VLTLTATPI 720 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQRAAINERVLVTTLTK 456 L S V D V T + V + +++ E + A N ++ Sbjct: 721 PRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKI 780 Query: 457 RMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + YL + R Y+H + + +I+ +FD+LV ++ G+D+P Sbjct: 781 QDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPN 840 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 V+ + + +AD G + L Q GR R+ + Y + K + E +R Sbjct: 841 VNTLLVENADTYGLSQ----LYQLRGRIGRSSR---LAYAYFL-YKRDKVLTEVSEKRLN 892 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + G G + D+ G NI + G D+V D+ + L Sbjct: 893 AIRDFTALG---SGFKIAMRDLSIRGAGNILGKQQHGF--------IDSVGYDLYAQMLD 941 Query: 634 QKIHELEGLM--MQHAQNLEFEEAAQIRDQLHQLRELFI 670 Q I + G + + A I + ++ I Sbjct: 942 QTIKQKRGDKVCHKTNAEVRINLEAYIPTEYISSQKQKI 980 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 34/270 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L ++ + + +++ + + M + Sbjct: 343 TPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEPSIRKIVG---------------- 386 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL--------LDPIIEVRPVATQ 431 QT+ SAT + D + G +D +E+ + + Sbjct: 387 -QIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEIIDKSQK 445 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D + EI +++ ++ T TK+ +DL++ L+ R +H D +R +++ Sbjct: 446 YDR-VKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRDKVMDL 504 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G + L+ ++ GLD+ ++ LV D F + + +GR R GKA Sbjct: 505 FKTGRVNTLIATDVASRGLDVKDIKLVINYD-----FPKQIEDYVHRVGRTGRAGAQGKA 559 Query: 551 ILYGD-KITPSMAKAIGETERRREKQQKYN 579 I + D ++K + + ++ ++ + Sbjct: 560 ISFLDQYEDKKISKELVDVLKQNNQEISQD 589 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 17/300 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + E G + G P L D L +VV + Sbjct: 231 TRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRD-LDRGVDVVVATPGRLNDILEM 289 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + L E L + + K + QT+ +AT + + Sbjct: 290 RRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLL 349 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDL--------LSEIRQRAAINERVLVTTLTKRMAE 460 V V G +D ++ + V+ + L +I + +VL+ TKRM + Sbjct: 350 VHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCD 409 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L L +H D ER +++ R G +LV ++ GLD+ ++ +V Sbjct: 410 QLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVIN 468 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D F + IGR R G A + A + + ++ + Sbjct: 469 YD-----FPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRD 523 >UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7VM16_9ANNE Length = 990 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 34/344 (9%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDR 355 + G S + P L D+ + + ++ + ++ M G Sbjct: 628 VAYGGVSSSYQEKEILKGAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFH 687 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVR 414 +++ G +++NR QT+ SAT + + + D + Sbjct: 688 TAIASILSQGESGMPSVNNR------------QTVVFSATIPEEVQKLAAKLLREDYIFI 735 Query: 415 PTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G ++ + + + D LL +++R +++V+ KRMA+ ++ +L Sbjct: 736 TVGCIGSANLDIEQYVLLMEQENKRDKLLEIVQKRGED--KIIVSVEEKRMADFISAFLS 793 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + +H ++ ER + +RD R G +LV N+ GLD+PEV V D Sbjct: 794 QASFPTASIHGNLTQQEREKALRDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPH- 852 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYG-----DKITPSMAKAIGETERRREKQQKYNEE 581 + IGR R GKA + + + S+ K + + + + + Sbjct: 853 ----IEEYVHRIGRPGRCGNTGKATAFFVAEADNHLARSLVKVLSDALQEVPEWLEKMAA 908 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 I G ++ + +SRP + D Sbjct: 909 DNIGMGGFSRPGGGKFGGRDMRNNRPGGYQQQSRPSHQQDEGRF 952 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 100/651 (15%), Positives = 199/651 (30%), Gaps = 112/651 (17%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + L E LE + G++ S K+ + L + A ++ Sbjct: 20 SKTRIFFALTEALEKKE-PLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQ 75 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + K F P+ D K + +I + R + ++E + Sbjct: 76 DGKIFAEN---------------CLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEE 120 Query: 136 VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V ++ A+ + + + + + + +G + ++ L L Y R DQ RG + Sbjct: 121 GMLVTTLPAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYS 180 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++D+F + ++ LR+E FD+EV+ L F + + + + IYP + P Sbjct: 181 LRGGILDVFSNQMEE-PLRIEFFDDEVDSLRYFSLESQRSLEQVEEANIYPVSEQGKPSS 239 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + ++ E ++LEE + + E + + S Sbjct: 240 LKAFSLLDYLP--KDCLVIVDEPVRVLEEGKRVE------------------EEFIAYFS 279 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 R E L + + + + + E+G + L + Sbjct: 280 QRAEAEANQE-----KDQRPLDLFSVRTLMEECASRPIFFFSSLGGISEWGEVFENPLKS 334 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 ++ E Q Y+ EK + L Sbjct: 335 ISVECREIPFYGKQFAQFKGDMEKYKKEKVRISLYSPSQSRASRL--------------- 379 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 E L + G D + +R E Sbjct: 380 ----------------------------AEELRKEGLSAYC--PDRLSEDREEGEDTENA 409 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G VL LR+G +P+ L+ + + D G +GR R Sbjct: 410 GSIRVLPRY--LRKGFYLPKEKLLVMTEQDLYGQS--------LVGRKRRKKKQV----- 454 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + IG + +E HGI +++V + G Sbjct: 455 ------ESLHIGSLTELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKILYGDGGNLY 508 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D + +A K++ L G Q ++ +I +L L Sbjct: 509 LPVNKLDGIEKYAGKEAKAPKLNRLNGSEWQKTKSKVKGAVREIAKELLAL 559 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/355 (18%), Positives = 121/355 (34%), Gaps = 34/355 (9%) Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 G LS + + L + + ++ +H + + + Sbjct: 661 MKGFPVEVGILSRFQSQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLLVVDEEQ 720 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP- 421 +G + + + + +SATP L S + D + +D Sbjct: 721 RFGVQHKERIKSL--------KENVDVLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRL 772 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSD 479 I+ + + + I + N +V + ED L++ R Y H Sbjct: 773 PIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIEDTALRLQKLLPEARIAYAHGQ 832 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + E EI+ GE DVLV ++ GLD+P + + I DADK G + L Q Sbjct: 833 MGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQ----LYQIR 888 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ Y + K++ E +R K + E G G+ + D+ Sbjct: 889 GRVGRSNR---TSYAFLL-YKKGKSLTEESEKRLKAIREFTELG---SGIRIALRDLEIR 941 Query: 600 GQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 G N+ + G + V ++ K L+ + +G + +FE Sbjct: 942 GAGNVLGAEQHG--------HMEAVGYELYTKLLRHAVLLEKGEKQE---EEDFE 985 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 34/285 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + +++ + + M + + Sbjct: 304 TPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIR-----------------RIV 346 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD--------PIIEVRPVATQ 431 QT SAT + + + G +EV + Sbjct: 347 SQIRPDRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDK 406 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +++ R++V T TK+ A+ LT + + +H D + ER I+ D Sbjct: 407 RQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILND 466 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + G +VLV ++ + GLD+ V V D K + + IGR R G + Sbjct: 467 FKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPK-----TVEDYVHRIGRTGRAGAVGNS 521 Query: 551 ILYG--DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + + D TP + + + E ++ + ++ Sbjct: 522 LTFITNDTHTPDRVRMAKDIVKCMEDVKQTPPQSLYDMAAISIAS 566 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 111/342 (32%), Gaps = 19/342 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ L +V+ + + R + R L E L Sbjct: 121 YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED 180 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVA--- 429 + QT+ SAT + + + + P+IE Sbjct: 181 IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKE 240 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +Q D L I I ++ TKR ++L LE G LH D+ +R ++ Sbjct: 241 SQKVDALCRILDMEEIGSS-IIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVM 299 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + R G+ ++L+ ++ GLD+ V+ V D + S + IGR R G Sbjct: 300 KKFRDGKAELLIATDVAARGLDVENVTHVINYDIP-----QDPESYVHRIGRTGRAGRKG 354 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 AI + K I + R +++ I + K+ + + + Sbjct: 355 IAITLINYREYRQLKLIERVTKARIQRRDLPSMADIVER--QKEAHKMKIVKL-LDGGHF 411 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIH--ELEGLMMQHAQ 648 + + PM+++ L+ I E E + + Sbjct: 412 GEYKSIISELAEEYDPMEIAAATLKLLIEGPEAETEKDEAPE 453 >UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME Length = 630 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 28/259 (10%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + + + M + + + Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGER 383 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-- 429 QT+ SAT + + + + + G++ +E Sbjct: 384 -------------QTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVA 430 Query: 430 -TQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + DLL EI +R + LV K+ A+ + +L E+ +H D +R Sbjct: 431 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 490 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 E + D + G +LV + GLD+ VS V D K + IGR R Sbjct: 491 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK-----GIDEYVHRIGRTGRV 545 Query: 545 NVNGKAILYGDKITPSMAK 563 G+A + D + + Sbjct: 546 GNRGRATSFFDPEEDAPLR 564 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 91/266 (34%), Gaps = 33/266 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + +++ + + M V Sbjct: 207 TPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVV----------------- 249 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + + D + G + +E+ + + Sbjct: 250 SQVRPDRQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKF 309 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LLS + N RVLV T TK+ ++L + L++ G +H D ER + Sbjct: 310 KRLLSLLNSF--DNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMF 367 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAI 551 R G VLV ++ GLD+ +V + D + I IGR R+ G A Sbjct: 368 REGHISVLVATDVASRGLDINDVRYIINYD-----YPSQTEDYIHRIGRTGRSDKKGTAY 422 Query: 552 LYGDKITPSMAKAIGETERRREKQQK 577 + P +A+ + E + + Sbjct: 423 TFFSAKQPRLARELIEVLKEARQTIP 448 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 131/410 (31%), Gaps = 37/410 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ + + Q + E M++ Y Sbjct: 545 PMDRLICGDVGFGKTEVAIRAAFKSVMGGKQVAILVPTTVLAEQHYRNFRERMSD--YPV 602 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + L D + +V +H I + + + Sbjct: 603 TVELLSRFRTAAEQRKTVQGLAD----GRVDIVVGTHRLISKDILFKDLGLVVIDEEQRF 658 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L S D T L+ I Sbjct: 659 GVLHKERFKEMFKLVDM--------LTLSATPIPRTLYLSLMGAKDMSTIETPPLNRIPT 710 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + + ++ + I + + +V E + + +++ + R + H +D Sbjct: 711 ETLICPYDERIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIGHGQMD 770 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ + G DVL+ ++ GLD+P + + I AD+ G L Q GR Sbjct: 771 EHELEDVMHEFVSGAADVLISTTIIESGLDIPNANTIIIDRADRFGLA----DLYQLRGR 826 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + P RRR K G G + D+ G Sbjct: 827 VGRAQH---KAYAYLLLPREM-MTQGEARRRINAIKQYSSLG---AGFKIAMRDLEIRGA 879 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 NI T G N+ D+ L+Q I +L+G ++ + Sbjct: 880 GNILGTAQSG--------HIVNIGFDLYCALLKQAIAKLKGEKVRARLEV 921 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 129/388 (33%), Gaps = 41/388 (10%) Query: 14 SGDQPEAIRRLEEGLE--DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 +Q A LE L + V + + F A ++ + ++ PN Sbjct: 7 PLEQIAAAPPLEAKLALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVRTQE 66 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 ++ E+ ++FP+ + P D + A + RL + + Sbjct: 67 TMHNELLQWFPDA---------------LFFPEIDRAPVEGALPDPESIAERLGIVQRLT 111 Query: 132 E--RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVV+ S + P ++ + L +D+ +L++LAE Y Q Sbjct: 112 SVKGRQVVVLTRASLDDEVPSPAALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQVSA 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F VRG ++D+F + +R+ELFD+E++ L FD T V + T+ Sbjct: 172 RGQFAVRGGILDVFSFHHS-LPVRIELFDDEIDSLREFDLDTQISVQHLDTVTLL----- 225 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 +A +++E + R + Q + +E G E+Y Sbjct: 226 -LGEAAAERASCKLQELVTERDITIDAEASWF-------AAQVRIMEHSEGAATEGAEDY 277 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 S G GE A +V + +R + R + Sbjct: 278 STAFFDHGLGE--------FEAGDFVVDEIKRERFFSQLREWRTEGWRVHVFCNNEGEIE 329 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPG 397 D P + T+ T Sbjct: 330 RLHDLLPPVEADALQFTVGTLNCGFTFP 357 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 68/489 (13%), Positives = 126/489 (25%), Gaps = 85/489 (17%) Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA--------ILRRLAELQYARNDQA--FQ 189 + + + + + G + + L + AR Sbjct: 3 TPPNPLEQIAAAPPLEAKLALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNV 62 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVER----LSLFDPLT-GQIVSTIPRFTIY 244 R + E++ FP LF E++R +L DP + + + + R T Sbjct: 63 RTQETMHNELLQWFPDA---------LFFPEIDRAPVEGALPDPESIAERLGIVQRLTSV 113 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 V + L L + +L E+ L Q + E + ++ Sbjct: 114 KGRQVVVLTRASLDDEVPSPAALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQVSARG 173 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPA--DGLLVVDESHVTIPQIGGMYR---------- 352 L P + D L D Q Sbjct: 174 QFAVRGGILDVFSFHHSLPVRIELFDDEIDSLREFDLDTQISVQHLDTVTLLLGEAAAER 233 Query: 353 -----GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK-SGG 406 + + + A R ++ E A Y +A + E +G Sbjct: 234 ASCKLQELVTERDITIDAEASWFAAQVRIMEHSEGAATEGAEDYSTAFFDHGLGEFEAGD 293 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 VVD++ + + S++R+ RV V + E L + L Sbjct: 294 FVVDEI------------------KRERFFSQLREWRTEGWRVHVFCNNEGEIERLHDLL 335 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 L +G + G P + + DA+ Sbjct: 336 PP--VEADAL--------------QFTVGTLNC---------GFTFPSAKVAVLSDAELF 370 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G R+ R+ + RA + I + + + R E + G T Sbjct: 371 GRYRNTRARRMALRRAREQASRSQIDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTE 430 Query: 587 QGLNKKVVD 595 + L D Sbjct: 431 EVLVLAFAD 439 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 78/457 (17%), Positives = 143/457 (31%), Gaps = 52/457 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P + D I +E +++ F I P V ++ + + Sbjct: 27 PIQKDSIPYALE--GDDILG------QAQTGTGKTGAFGI-PLIEKVVGQQGVQSLILAP 77 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 ELA + L ++ ++ G + + + P Sbjct: 78 TRELAMQVAEQLREFSKGQKVQVVTVF---------GGMPIERQIKALKRGPQIVVGTPG 128 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + D+L L + + + M +D+ ++ Sbjct: 129 RVIDHLNRRTLKTQGIHTLILDEADEM----------------MNMGFIDDMRFIMDKIP 172 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIR 440 A QT+ SAT E + + T DP I+ + + Sbjct: 173 AEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT 232 Query: 441 QRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E +V TKR ++LT L G + LH DI +R+E+++ + + D Sbjct: 233 NFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 +LV ++ GLD+ VS V D + S IGR R G A+ + + I Sbjct: 293 ILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVTFVNPI 347 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + I + RR K + + DI QN + + R + Sbjct: 348 EMDYIRQIEDVNNRRMKALRPPHRKEVLKARE----DDIKDRVQNWMSRENEPRLQRIS- 402 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + S + + + EL + L FE+ Sbjct: 403 --SELLKEYDSTELVASLLQELVEANDEVEVQLTFEK 437 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 133/416 (31%), Gaps = 41/416 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + M GY Sbjct: 605 PMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAILVPTTVLAQQHFLNFRDRMA--GYPI 662 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + A + ++ +H + + + + Sbjct: 663 VVETVSRF----RKPAEVKKILQSTAAGKVDILIGTHRILQKDVSFKDLGLVVIDEEQRF 718 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L + + V T ++ Sbjct: 719 GIKHKEVFKE--------WRSTVDILTMSATPIPRTLYMALTGARELSVIETAPVERKPI 770 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 V + D L+SE IR+ A +V + + LE+ V H +D Sbjct: 771 QTIVKSYDDALVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVGHGQMD 830 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D ++ VLV ++ GLD+P + + I AD+ G + L Q GR Sbjct: 831 EKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQ----LYQLRGR 886 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R Y + K + + R+R ++ H G + D+ G Sbjct: 887 VGRFKRQ---AYAYLLL-HKHKRLMDVARKRLAAIRH---HNQLGAGFRLAMRDLELRGA 939 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEF 652 N+ ++ G V ++ + L+Q + L+G L ++ + L+F Sbjct: 940 GNLLGSEQSG--------HIVGVGFELYCQLLKQSVARLKGDATALQIRASVKLDF 987 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 18/262 (6%) Query: 38 LGVTGSGKTFTIANVIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 +GV + + I + + ++A N LA QL ++ F + + + + Y+ Sbjct: 24 IGVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYF 83 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV-VASVSAIYGLGDP-DLY 154 E + + R++A ++ + D +V V + A+ D Sbjct: 84 PEETELSEDEDSPVDRF----ETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVDAL 139 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L L G ++ +L L Y G F RG +ID++P S D R+ Sbjct: 140 TASQLVLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPI-SADTPYRI 198 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F +E++ + DP+T + + I P + A + L AR Sbjct: 199 DFFGDEIDAIKELDPVTQRSGAPTESIAIDAA-----PTLELKPAPNGYADHLPARSAWA 253 Query: 275 LENNKLLEEQRLTQRTQFDLEM 296 L LE +L + LE Sbjct: 254 L-----LEPDQLMESFDSALEQ 270 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 109/325 (33%), Gaps = 40/325 (12%) Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D L + ++ S++ + + M + Sbjct: 220 HICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIR--------------- 264 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K + QT+ SAT + + + + D V G D ++ V Sbjct: 265 --KIVDQTRPDRQTVMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQ 322 Query: 428 VATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + LL +R+ A +R L+ TK + + L ++G R H D+ +R Sbjct: 323 GFEKEEKLLETLREINAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRD 382 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + R G+ +LV ++ GLD+ ++ V D + + S + IGR R+ Sbjct: 383 IALDRFRSGKTPILVATDVAARGLDVSDIKYVINYD-----YPDTSESYVHRIGRTGRSN 437 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G AI AK + + E +Q+ N E + N + Sbjct: 438 RSGTAITLFTPDNAGQAKQLVSVLQ--EAKQEVNPELLELVD------RQVSQKFANRRR 489 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPK 630 A+ RP + D + + Sbjct: 490 RPAQQSWDRRPQHRQGDRFGDYAQE 514 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 82/644 (12%), Positives = 185/644 (28%), Gaps = 123/644 (19%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + + + G + + +AN + +V+A + A Sbjct: 7 FLQENSFPAISLFENADNEAIHVNGASVPLASMMVANRFLKSPQNILVIAKDYRSAEVWV 66 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ER 133 ++ E V +F PS + E + + RL + + Sbjct: 67 ENLESMVGEEFVRFF-------------PSLGLKPYEIKVPFEGVLEERLKFFRDVSHTE 113 Query: 134 RDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + VVV + A + L +P ++ + L VG ++ ++ + + G Sbjct: 114 KPFVVVCPLDAFLMKLPEPGEIMRQVRTLRVGDQLEPSSLRPWFLDHGFVEQPMVSGVGE 173 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F +RG ++D+ +R+E + +E+E + FD + + + + +P + P Sbjct: 174 FSIRGCIVDVNCLLY-PHPIRIEFYGDEIESIRAFDIFSQRSLEQMTHIEFFPMGEFTVP 232 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + ++ S + Sbjct: 233 ESVMAGEECSVE---------------------------------------------SLW 247 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 +L DY+P L+ +E + MY R + + + Sbjct: 248 WHRPHHQRLVASLLDYMPRASLVF-EELSLLSETASKMYGAFRGAYDEARVTDAGVAAPA 306 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D K E L + T ++ G+ + +RP + Sbjct: 307 D-IWFKIGELSRLFVGRASLDMT----RVKVDDGNWHEMHMRP---------QDFTSNGT 352 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D + EI + RV V T L E + ++ Sbjct: 353 DAVAKEIEEFYDKGGRVYVMAQTLGGVNRLREIFDGLPIEDYFI---------------- 396 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 L EG + + ++ + ++ + ++ I Sbjct: 397 -----------GNLSEGFWLEDDNVAFLTESRILNRHAN-KARKHKIA------------ 432 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD---ILALGQNIAKTKAK 609 G M +++ + + G+ +N +VD + G + K Sbjct: 433 -GSVTNALMVESLNRGDLVAHEDHGIGRYLGLVRVEVNGGMVDCALLEYDGGDRLKFPVS 491 Query: 610 GRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 K + P+++ + K + ++ ++Q A++L Sbjct: 492 DLQKIERLDRPEDIETKLDRLGSKTWENIKKRVKQKVIQIARDL 535 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 67/426 (15%), Positives = 138/426 (32%), Gaps = 38/426 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ K + N ++ T E E Sbjct: 588 PMDRLICGDVGFGKTEVAMRAAF----KCVSSNKQVAILVPTTILAAQHYENFCERFAAY 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ ++ + +F + A + +V +H + + ++ Sbjct: 644 PVK--IALMNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKF 701 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L LA T+ +SATP L S V D + T ++ + Sbjct: 702 GVKQKEKLRQL--------RLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPV 753 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + + D++L I A +V V + LTE +E H ++ Sbjct: 754 ETKLMQRDDEVLKNAILDELARGGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVAHGQME 813 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ +FD+LV +++ GLD+P + + I++A G + L Q GR Sbjct: 814 DHELERVMDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQ----LYQMRGR 869 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + P + I + RR K + + G G + D+ G Sbjct: 870 VGRSS---VLAKAFLVIPQRGE-ISQESMRRLKALEQFTDLG---SGYQLAMRDLEIRGA 922 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQI 658 + + V + + +++ + L G ++ E +A Sbjct: 923 GNLLGQEQHGF-------IAEVGFETYVRLVREAVEMLRGGALEKPIQPRVEIGVDAYLP 975 Query: 659 RDQLHQ 664 D + Sbjct: 976 EDYVED 981 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 93/268 (34%), Gaps = 31/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + + M + + + + Sbjct: 281 TPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ-------------QMD 327 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPV------AT 430 QT+ SAT + + + + G D I++ + Sbjct: 328 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRS 387 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + DLL R+ ++ LV TK+ A+ L +L +G +H D ER Sbjct: 388 HLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVA 447 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 +R + G +LV ++ GLD+P V+ V D + + IGR R + Sbjct: 448 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNS 502 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQ 575 G A + + +MAK + E + ++ Sbjct: 503 GLATAFFNDNNTTMAKPLAELMQEANQE 530 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 115/332 (34%), Gaps = 17/332 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + K + L+ + +++ +E+ + + R ++ G + + + L +V Sbjct: 67 DRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE-LKKGADIV 125 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I R D+ R L E L E QT+ SAT Sbjct: 126 VGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVLFSAT 185 Query: 396 PGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 LE + + V T ++ + V P + + L+ I Sbjct: 186 MPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLI--SMQNPHL 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+M ++LT L G LH D+ R ++ + + G+ ++LV ++ Sbjct: 244 AMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAAR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ + +V D + + IGR R G A+ + + Sbjct: 304 GIDVDSMDVVFNYDLP-----QESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLER 358 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 T R + Q+ + L+ D+ Sbjct: 359 TTRSKLTQKPLPSLEEVRKIRLDFLREDLEHR 390 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 105/295 (35%), Gaps = 30/295 (10%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQR 442 A + +SATP L S D + T + V D +++ IR+ Sbjct: 699 AAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPVQTYVVENNDTIIANAIRRE 758 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVL 500 +V + + +++E R H + ++ D G++D+L Sbjct: 759 MKRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDIL 818 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ GLD+ + + + +AD G + L Q GR R+ + A Y Sbjct: 819 LATSIVENGLDVANANTIIVYNADHFGLSQ----LYQMRGRVGRSHH-MAFAYF---VYQ 870 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K + ET +R + K E G G + D+ G + Sbjct: 871 ADKILTETAEKRLQAMKEFAELG---AGFKIAMRDLEIRGAGNLLGAQQ-------HGHI 920 Query: 621 DNVPMDMSPKALQQKIHELEG------LMMQHAQNLEFE---EAAQIRDQLHQLR 666 +V +M K L++ + L+ + +L+ E + I D +H++ Sbjct: 921 ASVGFEMYCKLLEEAVERLQNGKAPEEAPPEPVIDLQTEAYIDGGFIADAMHKIE 975 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 127/354 (35%), Gaps = 33/354 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 +A + Q A++RL + + + G+ GS K +A A L + +L + Sbjct: 2 NALFAAMLQDGALQRLRDHTQGEPRESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAE 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ PE P +P DTF K A+ ++ R+ Sbjct: 62 SLADWKEDLSLLLPE-------------VPIVELPEVDTFDVKAAAKSQERAARRMEVLG 108 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ ++V+A A G + + ++ L L +G ++ + +L RL +L Y ++ Sbjct: 109 RLVRGEHIIVLARTEAAVQKGMGRNEFKRLSLTLRMGEVLPREELLERLVDLGYEHAEEV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG ++DIF A + + +RVE FD+E++ L FD T + + TI P Sbjct: 169 ERVGQFSVRGGIVDIF-AINAAVPVRVEYFDDEIDSLREFDLDTKRSTKNVGAATIMPLA 227 Query: 248 HYVTP-----------------RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + + I+ + + + E + Sbjct: 228 QTDASGKPELFLSYLEGKGTVLFDEPTRIRDTIRTMVKENPDIKGKIFSWEELLQAAHGN 287 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + + L G + P D L + + + + Sbjct: 288 RIVYMALL-LQQVPGADAVENIGVTATTMTPFRRQMDLLENEANRWLAQKQRVL 340 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 66/393 (16%), Positives = 120/393 (30%), Gaps = 25/393 (6%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E + L + ++ +E+ + + R + G + L Sbjct: 69 EELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMR-LKRGAN 127 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV + + + D + L E L + QTI S Sbjct: 128 IVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTILFS 187 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVA---TQVDDLLSEIRQRAAINE 447 AT L + D + IE + + D L I Q Sbjct: 188 ATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYH-DPA 246 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ TKRM +++T +L+ G LH D+ +R +++ + G +LV ++ Sbjct: 247 LSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVAA 306 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+ V V D +++ + IGR R GKA+ + Sbjct: 307 RGIDVNNVDYVINYDVP-----QNQEYYVHRIGRTGRAGKEGKAVTICSG--RRQVDELY 359 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 R + K P G + + + + + A V + V Sbjct: 360 HIVRMTKSTIKRES----LPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG 415 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 +P I + M +F E Q R Sbjct: 416 YNP----TTIAAVALEMAFGRPKTDFPEIKQFR 444 >UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax=Brugia malayi RepID=A8P4I3_BRUMA Length = 754 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 104/326 (31%), Gaps = 40/326 (12%) Query: 303 CSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G ENY ++ G P L D + + + + + + M Sbjct: 408 YGGRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEP 467 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPT 416 + + ++P T SAT + + + V Sbjct: 468 QIRQIVDLSKMPPKGQRV-------------TAMFSATFPKEIQVLAQDFLMPNYVFLAV 514 Query: 417 GLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G + E V + L ++ + LV TKR A DL YL++ G Sbjct: 515 GRVGSTSENIMQKIVWVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDG 574 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H D+ +R + + R G +LV + GLD+P V V D + Sbjct: 575 YNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSD---- 630 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + IGR R N G A + + ++A+ + E E + P+ L Sbjct: 631 -IDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAELVV---------EANQELPEWL 680 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSR 615 K D G + K R R Sbjct: 681 EKISADAQRYGTRPGRAKGGSRFGGR 706 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 137/437 (31%), Gaps = 57/437 (13%) Query: 41 TGSGKTFT-IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + K+F I + I + ++ +++ N+ A QLY + F P + YF Sbjct: 7 PQAAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYF---------- 56 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 PS DT S N +I R + +V+ + + + L D + K Sbjct: 57 ---PSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKY 113 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L M + + + L E + RN G F VRGE++D+ ES R+ Sbjct: 114 YLKLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESKG--YRINFS 171 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + VE + FD T + I P V E I + Sbjct: 172 WDYVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDNYLRNFG--------- 222 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + E + SG E G L DYL ++ Sbjct: 223 --------VNHTDNPLYEAITGGRKFSGYEQLLPLFYDSYSG-----LTDYLNNPVIIFD 269 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + I + Y + N+ + L+P +Y ++ Sbjct: 270 NLTKQAILEFEHSYNDFYKARLDA------------NKLKFNSFYPTLSPSQLYFTSLEA 317 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV---DDLLSEIRQRAAINERVLVTTL 454 LE+ ++ + I + D L I +A +++++ + Sbjct: 318 IELLEQENNILISYENSEQASIVENIAAASFVEKKTIFDKLFEVI--KANSRKKIIIGSS 375 Query: 455 TKRMAEDLTEYLEEHGE 471 E + +E + Sbjct: 376 VLSSFERVKSIIENYEY 392 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 103/299 (34%), Gaps = 30/299 (10%) Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 F + + + +SATP L+ S + + + T L+ + V ++ + Sbjct: 721 FLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRD 780 Query: 439 -IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLG 495 + + ED+ + L++ + Y H + + EI+ + G Sbjct: 781 ALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAG 840 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 +FD+L+ ++ G+D+ + + + I AD G + L Q GR R GK Y Sbjct: 841 KFDILISTTIIESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGR---GKMRGYAY 893 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 PS K + RR E Q G D+ G + + Sbjct: 894 LTLPSHKKMTPHSLRRLEIIQNSCA----LGSGFTIASHDMDLRGFGNLIGEEQSG---- 945 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE---------FEEAAQIRDQLHQL 665 + V ++ + L+++I + + Q F + D + +L Sbjct: 946 ---QIREVGTELYQEMLEEQIAIFKDEPISGEQPFIPTINLGLSVFIPDNYVSDSVLKL 1001 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 91/655 (13%), Positives = 190/655 (29%), Gaps = 121/655 (18%) Query: 45 KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 ++ +A + ++P +V+ P+ A +++++ +A Q A + + Sbjct: 81 RSAIVAALAK--KKPVVVIVPSSRDAEDFIASVRDWYDGDA-----------QDVAKLEA 127 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRD--------VVVVASVSAIYGLGDPDLYLK 156 +T + S R++ + + + V+V V ++ + Sbjct: 128 WETLPHERLSPRADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDI 187 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L G + ++RL E Y R D +RG F VRG +ID+F A + +R+E Sbjct: 188 DPLLFECGKELTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVF-APTMTHPVRIEF 246 Query: 217 FDEEVERLSLFDPLTGQIVS-TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F +E++ + F + I P + +A I Sbjct: 247 FGDEIDTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRARSLIGS---------- 296 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 LE + G+E+ L R ++ + LP + ++ Sbjct: 297 -----------IPNADDMLESIANSIPVEGMESLLPALVDR-----MESVQNMLPKESVI 340 Query: 336 VVDESH---VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++ + + A + G P+ F++ L Sbjct: 341 ILSDPEKCRRAADDVTATANEFLAASWHVAASG-----HGSGAPITFDQANFLDFDETIS 395 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 S N+++ K VD + P + + I V +T Sbjct: 396 SLELSNHDVWKLTSFGVDN-QIYGNIALPASAPQEFRGDESKVSGGITSLVDNGFAVTIT 454 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 L +H + + +G + Sbjct: 455 AAASGTLARLRRA-----IYATGVH-------------EFTTVRSSI-------SDGF-I 488 Query: 513 PEV-SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 V + + + D GK+ TP + + Sbjct: 489 DNVARIAILTERDL---------------------TGKSSASAQLKTPKRRRKAIDLMEL 527 Query: 572 REKQQKYNEEHGI----TPQGLNKKV------VDILALGQNIAKTKAKGRGKSRPIVEPD 621 + +E+HGI + N V + L + +K A P + D Sbjct: 528 KPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPNDKLFIPTDQLD 587 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELFIAAS 673 V + + K+++L G + + +I + L +L R+ + Sbjct: 588 LVSKYIGAEI--PKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFA 640 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 101/316 (31%), Gaps = 31/316 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + VV +H + + +G L Sbjct: 757 LQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKAL--------RTNVD 808 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINE 447 + +SATP LE + + + T D + + V A + + I++ Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGG 868 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + ++E RV H + + +IRD + DVLV + Sbjct: 869 QVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTI 928 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD+ G + L Q GR R Y + +K + Sbjct: 929 IETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHER---AYAYFL-YDPSKPM 980 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 + R +H G + + D+ G N+ + G + V Sbjct: 981 TQQSHDRLSTI---AQHTALGSGFDVAMKDLELRGTGNLLGDEQSG--------HIEGVG 1029 Query: 625 MDMSPKALQQKIHELE 640 D+ + + + + + + Sbjct: 1030 FDLYVRMVSEAVEKYK 1045 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 51/392 (13%), Positives = 122/392 (31%), Gaps = 32/392 (8%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + E+++ + L + +++ E+ G + + F G+ L Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVF--PVYGGQSIDRQIRELKR 120 Query: 332 DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + I + + L E L + + + + + + Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + ++ + + + + D + + L I Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEK 240 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 L+ TK ++++ L E G LH D+ +R + + + + +VLV Sbjct: 241 EFYG--LIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ G+D+ +++ V D ++ S + IGR R G A+ + + Sbjct: 299 DVAARGIDINDLTHVVNYDIP-----QNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNK------------KVVDILALGQNIAK--TKA 608 K I + ++++ + I K K D + + + Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQ 413 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + D + + + E Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANREGR 445 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 127/367 (34%), Gaps = 14/367 (3%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K L+ L + +++ E+ + + ++ L G + + L +VV Sbjct: 71 KKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRS-LKDGTQIVVG 129 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + D L E L QT+ SAT Sbjct: 130 TPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189 Query: 398 NYELEKSGGDVVDQV---VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVT 452 + + D V V L P + + + + + + + +V Sbjct: 190 QAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSIVF 249 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR ++L + L+ G LH D+ V+R ++ R G D+LV ++ G+D+ Sbjct: 250 CNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGIDV 309 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 +V V D + + + IGR R GKA + I + Sbjct: 310 GDVEAVFNYDVP-----QDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKT 364 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + Q + IT + K + ++ + + TK + + ++E D MD++ Sbjct: 365 KIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIE-KKLIEEDYTSMDLAAAL 423 Query: 632 LQQKIHE 638 L+ + + Sbjct: 424 LKMNMGD 430 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 97/287 (33%), Gaps = 38/287 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + S++ + + M + K Sbjct: 420 TPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQVR-----------------KIF 462 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQ 431 QT+ SAT + +VV+ + IEV + Q Sbjct: 463 SQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVVS-SNQ 521 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L + Q ++ L+ TKR + L L R +H D + ER I+ D Sbjct: 522 LQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHD 581 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R G+ ++L+ ++ GLD+ +V V D ++ S I IGR R G A Sbjct: 582 FRKGDCEILLATDVASRGLDIQDVKFVINYDVP-----KNIESYIHRIGRTGRAGNKGTA 636 Query: 551 ILYGDKITPSMAKA-----IGETERRREKQQKYNEEHGITPQGLNKK 592 I + S K I E R ++ + E P+ +K Sbjct: 637 ISFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKIGAPRAPSKS 683 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 34/297 (11%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G ENY ++ G P L D + + + ++ + + M Sbjct: 250 NIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRM 309 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + P A T SAT + + D Sbjct: 310 LDMGFEPQIRKIVGQGMPP--------------KTARTTAMFSATFPKEIQVLAKDFLKD 355 Query: 411 QVVR----PTGLLDPIIEVR----PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G IE R + +L+ + + N VLV TKR A +L Sbjct: 356 NYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSEN-LVLVFVETKRGANEL 414 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 +L R +H D+ +ER + R G+ +LV + GLD+P V V D Sbjct: 415 AYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYD 474 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R N G A + + + + + ++ Sbjct: 475 LP-----GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPE 526 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 113/328 (34%), Gaps = 19/328 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 ++ L +R + ++ + L + + + + + + S G P Sbjct: 61 LQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKM-----YTSCVVGGVPF 115 Query: 323 PTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P F L ++V + D L E L + Sbjct: 116 PPQFHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAY 175 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDD-----L 435 QT++ SAT + S + + V T +E V ++ L Sbjct: 176 LLPKKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPL 235 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L E+ ++ ER LV TLTK+ + L L G +H D+ ER + + + G Sbjct: 236 LKELLEK-DECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRG 294 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + LV ++ G+D+ ++S V D + + + IGR AR +G AI + Sbjct: 295 KLKTLVATDVAARGIDVSDISHVINFDMP-----NATENYVHRIGRTARAGKSGTAITFC 349 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEH 582 M +AI + ++ + Sbjct: 350 LPEDRGMLRAIQKLIGKKIAEMDGFTFF 377 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 111/344 (32%), Gaps = 35/344 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P +++ + R+++ I LA R++ + + + R + Sbjct: 154 AYILPALIHISNQPRLLRGDGPIALVLAPTRELAQQ---IQQVCNDFGRRMSIMNTCIFG 210 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + P L D+L + + +++ + + M + Sbjct: 211 GASKHPQADDLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIR 270 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 K Q + SAT + + + + + G L+ Sbjct: 271 -----------------KIISQIRPDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLN 313 Query: 421 --------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGE 471 IIE + L + + + + + ++ TKR + +T ++ +G Sbjct: 314 LAANENIMQIIECCEEYEKETRLFKLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGW 373 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R +H D +R ++ R +LV ++ GLD+ +V V D F + Sbjct: 374 RCDGIHGDKTQKDRDYVLNTFRRLRSGILVATDVASRGLDVDDVKYVINFD-----FPNN 428 Query: 532 ERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREK 574 I IGR R+ G + + + A + R + Sbjct: 429 TEDYIHRIGRTGRSTNKGTSYTFFTPANGAKAGDLIGVLREANQ 472 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 104/330 (31%), Gaps = 33/330 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + D V + + M L + Sbjct: 129 TPGRVMDHMRRHTLRLDDLRTVVLDEADEM-----------------LNMGFLDDIQTIL 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 QT+ SAT L+ + + D I R + D Sbjct: 172 AETPDTRQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMD 231 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ + Q +R +V TK M + LTEYL +HG R +H D+ R ++++ R Sbjct: 232 ALNLLLQYH-DPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRD 290 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G+ +LV ++ G+D+ + V D + I IGR R G+ + Sbjct: 291 GKTRILVATDVAARGIDVENIEAVFNFDIP-----QEFEHYIHRIGRTGRA--GRTGMSH 343 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + RR I + + KK A + G+ Sbjct: 344 TLVCGARQVDTIRQLRRFINADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKWGE 403 Query: 615 RPIVEPDNVPMDMSPK--ALQQKIHELEGL 642 + DM AL Q I + Sbjct: 404 QLDAIAAERGCDMRDIACALAQMIAARDKK 433 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 95/313 (30%), Gaps = 15/313 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + Q L +L E + G Sbjct: 57 LPSLHRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQI 116 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L LV+ I + L E L + Sbjct: 117 DFLRRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHP 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLLS 437 QT+ +AT + D V+ P + ++ + A + L + Sbjct: 177 ERQTLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKT 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + L+ T TKR AEDL L G LH D +R ++ R G+ Sbjct: 237 ILTEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQT 296 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+ V+ V D +S + IGR R G+AI + Sbjct: 297 RILVATDVAARGLDIDTVTCVINYDLP-----QSPEDYVHRIGRTGRAGRSGRAISFCHP 351 Query: 557 ITPSMAKAIGETE 569 ++ + I Sbjct: 352 ADRNLLRDIERLL 364 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 108/312 (34%), Gaps = 35/312 (11%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G G + P L D++ + + + + + M Sbjct: 226 MIRQTCLFGGAGRGPQANDLRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQML 285 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + +VD Sbjct: 286 DMGFEPQIRKIIGH-----------------ISKDRQTMMFSATWPKEIQQLAADFLVDP 328 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G D +I ++ L + + ++++++ T TKR +DL Sbjct: 329 VHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVLNEHK--DDKIIIFTKTKRTTDDLQ 386 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L G + LH D +R ++ R + +LV ++ GLD+ ++ +V D Sbjct: 387 ENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDVAARGLDVNDIDIVINYD- 445 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK--YNE 580 F + + IGR AR G A+ + +M++ + + + +++ Sbjct: 446 ----FPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKLAKIMTQAKQELPDWLKA 501 Query: 581 EHGITPQGLNKK 592 +TP+G K+ Sbjct: 502 LADVTPKGAWKE 513 >UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 Tax=Trypanosoma RepID=Q388E8_9TRYP Length = 660 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 91/285 (31%), Gaps = 26/285 (9%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + + P L D + + + + + M + Sbjct: 272 GGADPRHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQI 331 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 ++ G + A QT+ SAT + + G + Sbjct: 332 RMIVQGP-----------DSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRV 380 Query: 420 DPIIE-----VRPVAT--QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 E VR + + LL+ +R+ + VLV KR A+ L +L Sbjct: 381 GSTTENITQDVRWIEDPDKRQALLTLLRE--NEGKLVLVFVEKKRDADYLERFLRNSELA 438 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H D ER E +R + G VLV ++ GLD+P V +V D + Sbjct: 439 CVSIHGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPS-----NI 493 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 + IGR R G AI + ++ ++ + + Sbjct: 494 DDYVHRIGRTGRAGKVGVAISFFNEKNRNIVDDLIPLLNETNQVI 538 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 14/293 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPL 377 GE F L ++V I I TL E L + Sbjct: 109 GESYEKQFKELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIE 168 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVD 433 + + QT+ SAT + + + + + +D I + + + + Sbjct: 169 RILQTTPETRQTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKE 228 Query: 434 D--LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL + ++ TK A+ +TE L++ G LH D+ +R ++ Sbjct: 229 KQSLLERLLDF-ENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNR 287 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R + +LV ++ GLD+ +V ++ D + + + IGR R GKA Sbjct: 288 FRSKQLSILVATDVAARGLDVDDVEIIVNYDLP-----QQDEIYVHRIGRTGRAGKKGKA 342 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + M + + K+ + + + L I N Sbjct: 343 FTFVTPLKRRMLDMLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANE 395 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 111/342 (32%), Gaps = 15/342 (4%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + L L + +++ +EL S ++ + G+P L + Sbjct: 65 HISKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTIL--PVYGGDPITNQIRALKRNV 122 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + D+ + L E L + + QT+ Sbjct: 123 NIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLLF 182 Query: 393 SATPGNYELEKSGGDVV----DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-- 446 SAT + + + + ++ T + I + + + Sbjct: 183 SATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTP 242 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TK+ ++L E ++ G V +H D+ R+ ++ + G + LV ++ Sbjct: 243 SSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVA 302 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ ++ V D + S + IGR R G A SM K I Sbjct: 303 ARGIDVEGITHVINYDLP-----QDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQI 357 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + ++ + I + D+ + +K Sbjct: 358 KSVTKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSK 399 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 104/328 (31%), Gaps = 22/328 (6%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSAL 372 + G P L +VV + + L E L Sbjct: 592 TCLYGGAPKGPQLKELTRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF 651 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PII 423 + + K QT+ +AT + + +V+ V G +D + Sbjct: 652 EPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYV 711 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EV P + + L +I + +V++ TKR+ + L + H +H D Sbjct: 712 EVVPQMEK-ESRLGQILRAQERGSKVIIFCSTKRLCDQLARSI-GHQFGAAAIHGDKSQG 769 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER ++ R G+ +LV ++ GLD+ ++ +V D F + IGR Sbjct: 770 ERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTG 824 Query: 544 RNVNGKAILYGDKI--TPSMAKAIGETERRREKQQKYNEEHGITPQGLN---KKVVDILA 598 R + I T M + E ++K E GI + + Sbjct: 825 RAGATGVNVAAHMIATTIWMVVDVDVEEEGLMVEEKLLTEVGIEVLAVVLKDRSRSRSYD 884 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + ++ + + P E M Sbjct: 885 RFERPRVSRFDEKDVTAPGSEAPESGMS 912 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 113/359 (31%), Gaps = 31/359 (8%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +Y H P+ + + ++ EE + + G Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 416 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + + P L D + + + + + + + M + + Sbjct: 417 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 476 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 +P QT+ SAT E + + + + G + Sbjct: 477 VEQLNMPPTGQR-------------QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGST 523 Query: 423 ----------IEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + + DLLS IR + L+ TK+ A+ L E+L + Sbjct: 524 SENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCN 583 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H D ER E +R R G+ +LV + GLD+P V V D + Sbjct: 584 HPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSD---- 639 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + IGR R N G A + ++ ++ + E +++ E + +G Sbjct: 640 -VEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMSSDRG 697 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 100/294 (34%), Gaps = 28/294 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + + + M+ K Sbjct: 128 TPGRVIDHIKRKTLKTENIKTFVLDEADEMFD-----------------MGFREDIEKII 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 F QT + SAT + ++ + + + + P + A + + L Sbjct: 171 GFLPYERQTTFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLE 230 Query: 438 EIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + +V TK+M +DLT L+ G LH D+ ++R ++ R Sbjct: 231 ILSRILDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNS 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 D+LV ++ G+D+ +V LV D + + IGR AR G AI + Sbjct: 291 TIDILVATDVAARGIDVDDVDLVINYDMP-----QDVEYYVHRIGRTARAGREGTAISFV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + I + + + +++ + + + + DI TK Sbjct: 346 SPREMNTLSQIQKYTKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKE 399 >UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida RepID=DBP3_CANAL Length = 564 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 107/335 (31%), Gaps = 36/335 (10%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + + + + + G S + + + P L D + Sbjct: 231 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTANVVVATPGRLVDLINDG 290 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + + +++ + + M ++ QT+ Sbjct: 291 AINLGKVNYLVLDEADRMLEKGFE----------------EDIKTIISNTSNSERQTLMF 334 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQR- 442 +AT E + + V G D ++EV + L+ +R+ Sbjct: 335 TATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYN 394 Query: 443 --AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + ++L+ L K+ A + +L+ + V +H D+ +R + + G+ ++L Sbjct: 395 ANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLL 454 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P V +V F + + IGR R G A + Sbjct: 455 LATDVAARGLDIPNVKVVIN-----LTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEK 509 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 ++ A+ R Q EE KK Sbjct: 510 HLSGALCNIL--RGANQPVPEELLKFGGHTKKKAH 542 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 25/256 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + M + + +P Sbjct: 348 TPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQTNMPPPGQR------ 401 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPV---ATQVDD 434 QT+ SAT + + D + G I R V + D Sbjct: 402 -------QTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENEKRD 454 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L +I + +LV TKR A+ L +L G V +H D +R ++ R Sbjct: 455 HLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFRE 514 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +LV + GLD+P V V D + + IGR R N G+AI + Sbjct: 515 GSTPILVATRVAARGLDIPNVKFVINYDLPTD-----IEEYVHRIGRTGRVGNLGEAISF 569 Query: 554 GDKITPSMAKAIGETE 569 ++AK + + Sbjct: 570 YTDKNNNVAKELVDIL 585 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 96/272 (35%), Gaps = 11/272 (4%) Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V+ + G + R L E L + + Q Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176 Query: 390 IYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + SAT + + + + + + + +++ + + Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISE 236 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + L+ T+R +++ E L+++G + LH D+ R + + G+ D+LV ++ Sbjct: 237 RGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDV 296 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 G+D+ ++ V D + + IGR R + +GKAI + + + Sbjct: 297 AARGIDVHGITHVVNYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRR 351 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I + +R + + I + K++ DI Sbjct: 352 IEDFIGKRIPKMEIKNVGKIKERIDYKEISDI 383 >UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi RepID=D2VEC4_NAEGR Length = 535 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 116/346 (33%), Gaps = 32/346 (9%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----LGYCSG 305 + I + + V+L + L +Q + +F + + G SG Sbjct: 168 LLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSG 227 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + P + D++ + L + ++ + + M + + G Sbjct: 228 YQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEG 287 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----- 420 +P D T+ SAT + + + D++ G++ Sbjct: 288 SGMPPKGDRL-------------TLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDN 334 Query: 421 --PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + D L+ + ++ E+ LV K + + E L G + +H Sbjct: 335 ITQSFYQVDRRGKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHG 394 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D D R +R + G ++LV ++ GLD+ +V+ V D KE S I Sbjct: 395 DKDQRSRERSLRQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKE-----IDSYIHR 449 Query: 539 IGRAARNVN-GKAILYGDKITPSMA-KAIGETERRREKQQKYNEEH 582 IGR R N G A + D + + + + ++ E+ Sbjct: 450 IGRTGRVGNLGIATAFFDPSEDGKLCRELVKILKDANQEIPEFIEN 495 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 62/371 (16%), Positives = 127/371 (34%), Gaps = 36/371 (9%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDL-----EMMNELGYCSGIENYSRFLSGRGPGE 320 EL +++ + L Q + +F ++ G +G + Sbjct: 352 ELQEPEAIIVAPTRELINQIFLEARKFAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCG 411 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + ++ + + M + +P + Sbjct: 412 TPGRLLDVIQRGWIGLTKLRYLVLDEADRMLDMGFEPDMRRLVASPGMPPKENR------ 465 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL-------DPIIEVRPVATQV 432 QT+ SAT + + + D + G++ + ++ Sbjct: 466 -------QTLLFSATYPQDIQKLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKYSKR 518 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + LL + + NER +V TKR A+ + +L + +H D + ER + + D Sbjct: 519 EQLLDFL--KTIGNERTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADF 576 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G+ +LV ++ GLD+PEV V D ++ + IGR R N G+A+ Sbjct: 577 KAGKCPILVATSVAARGLDIPEVQHVVNFDLP-----KNIDEYVHRIGRTGRCGNIGRAV 631 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ--NIAKTKAK 609 + D S A T + +Q+ + G + K++ Sbjct: 632 SFYDPEVDSQLAASLVTILSKAQQEVPSWLEESAFSGGATSFSQANKSFASSDSRKSQQA 691 Query: 610 GRGKSRPIVEP 620 G + +P+ + Sbjct: 692 GCERRQPVPQI 702 >UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Magnaporthe grisea RepID=PRP28_MAGGR Length = 674 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 110/350 (31%), Gaps = 24/350 (6%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P Y+ P + + + + A E ++ + + T+ ++ Sbjct: 309 AAFVLPMLSYIEPLPPLNEV-TKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCL 367 Query: 300 LGYCSGIENYSRFLSGRGPGE--PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 +G IE + L P L D L L++ S+V + + M G Sbjct: 368 IGNKRTIEEDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFED 427 Query: 358 KETLVEYGFRL--------PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + N KF QT+ SAT + + Sbjct: 428 SIHKILAALPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLK 487 Query: 410 DQVVRPTGLLDPIIEVRP-------VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G + ++ + + L + + V+V TK + + Sbjct: 488 HPAMVTIGTIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAV 547 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L+ LH + +R ++ R G +VLV ++ GLD+P+VSLV Sbjct: 548 AKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVIN-- 605 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 + IGR R G AI + + + + + Sbjct: 606 ---FNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSK 652 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 37/312 (11%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADG 333 +L ++ + + D + + + G ++ + GE P L D++ Sbjct: 175 RELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQR 234 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 L+ +++ + + M + + R QT+ S Sbjct: 235 NLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRP-----------------DRQTLMWS 277 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + D + G + I+E+ ++ L+ + Sbjct: 278 ATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELLTSFG-- 335 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 R LV TKR + LT L G V +H +R + + + G ++LV ++ Sbjct: 336 RARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDV 395 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ + V D F I IGR AR+ G A + A+ Sbjct: 396 ASRGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARD 450 Query: 565 IGETERRREKQQ 576 + + ++ Sbjct: 451 LIDILDEANQEI 462 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 105/318 (33%), Gaps = 32/318 (10%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE + + G + + P L D + + + + Sbjct: 365 QIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLEN 424 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + M + + +P QT+ SAT Sbjct: 425 LRFLVLDEADRMLDMGFEPQIRHIIENRDMPPTGQR-------------QTLMFSATFPK 471 Query: 399 YELEKSGGDVVDQVVRPTGLLDPI----------IEVRPVATQVDDLLSEIRQ---RAAI 445 E + + + + G + + + + DLLS +R+ + Sbjct: 472 NIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNENEKRSYLLDLLSRLREGSPDYSP 531 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + L+ TK+ A+ L E+L ++ V +H D ER + ++ R G+ +LV + Sbjct: 532 DSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRSGDCPILVATAV 591 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+P V V D + + IGR R N G A + ++ ++ Sbjct: 592 AARGLDIPHVKHVINYDLPSD-----VEEYVHRIGRTGRMGNLGIATSFFNEKNRNIVSD 646 Query: 565 IGETERRREKQQKYNEEH 582 + E ++ E Sbjct: 647 LVELLIETNQELPSFLEE 664 >UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bacteroidetes RepID=Q11PH6_CYTH3 Length = 1122 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 69/427 (16%), Positives = 137/427 (32%), Gaps = 47/427 (11%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P V + ++ A + Q + + ++ + Sbjct: 579 HPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLVPTTILAMQHYKTFRDRLS--RFP 636 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E +RF + E + ++ + I + + + Sbjct: 637 CVVEYINRFKTAGQIKETLKRV----KEGKTNILIGTQRVISKDVEFQNVGLLIIDEEQK 692 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G ++ L + + T+ ++ATP L S D + T + Sbjct: 693 FGVKVKEKLREFKINID--------TLTLTATPIPRTLHFSLMGARDLSIIATPPPNRQP 744 Query: 424 EVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDI 480 + + + + +V + + + +++ R H + Sbjct: 745 VTTEIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAFLIKKLVPDARVTFAHGQM 804 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + E++ GE+DVLV N++ GLD+P + + I A G L Q G Sbjct: 805 EGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGLS----DLHQMRG 860 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + +TPS A+ R+R + + G G + D+ G Sbjct: 861 RVGRSNK---KAFCYLLTPS-VSALTGDSRKRLSVLEEFSDLG---DGFKVAMRDLDIRG 913 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 N+ + G ++ DM K L + I EL+ E E A R Sbjct: 914 AGNMLGAEQSGF--------ITDLGFDMYHKILDEAIQELK----------ETEFADLFR 955 Query: 660 DQLHQLR 666 D+L Q R Sbjct: 956 DELDQQR 962 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 62/389 (15%), Positives = 128/389 (32%), Gaps = 37/389 (9%) Query: 21 IRRLEEGLEDGLAH-QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 I+ L++ L++ + L G++GS A + ++ + + +K A ++++ Sbjct: 16 IQLLKQKLQERENNALFLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQ 75 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVV 137 P P+S V R ++ + Sbjct: 76 LLG--------------LPVFVFPASYKKPYHYEQVENANILQRAETLNYIINNQDKPSY 121 Query: 138 VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +V A+ + ++ +G +++ + L + R D ++ G + +R Sbjct: 122 LVTYPLALSEKVINKRSLVENTFIARIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIR 181 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +IDIF ++++ R+ELF E+E + F+P + V IP +I P +E Sbjct: 182 GGIIDIFS-YANELPFRIELFGTEIESIRTFNPESQLSVDNIPVLSITPNVQTRLLKEER 240 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL----------------EMMNEL 300 + + K +++EE +QFD ++ Sbjct: 241 ESLFTFLPADTTLWIKDYALTTEIIEECFSKVESQFDTILSSTGNSALLTSPDALFEDKY 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + IE YS G P T ++ E ++ + Sbjct: 301 SFEKSIEAYSIIEFGPHSYIPNATRIEFEAKPQPSFNKEFNLLLEDFRLRINQGYKIIIA 360 Query: 361 LVEYG--FRLPSALDNRPLKFEEFEALAP 387 + RL S L+ E + P Sbjct: 361 SESHQQIQRLHSILEELDPYIRFEEMIIP 389 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 98/333 (29%), Gaps = 51/333 (15%) Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 +LF +LPAD L + + +T I + ++ +T++ L +++ Sbjct: 241 ESLFTFLPADTTLWIKDYALTTEIIEECFSKVESQFDTILSSTGNSALLTSPDALFEDKY 300 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 Y G + + T + + + LL + R R Sbjct: 301 SFEKSIEAYSIIEFGPH----------SYIPNATRIEFEAKPQPSFNKEFNLLLEDFRLR 350 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++++ + + + + L LEE +R+ E+I LR G D Sbjct: 351 INQGYKIIIASESHQQIQRLHSILEELDPYIRF----------EEMIIPLREGFID---- 396 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L+ +++ D R K+I + T Sbjct: 397 ---LQR-------NILCYTDHQIF-------DRFHRYKTKERFSKSKSITLKELRTLQPG 439 Query: 563 KAIGETE--RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + R + E +G T + + D ++ K Sbjct: 440 DFVAHADFGIARFAGLERIENNGHTQEAIRLVFRD-----DDLMVISIHALHKISRYSGK 494 Query: 621 DNVPM---DMSPKALQQKIHELEGLMMQHAQNL 650 D P + + K +++ + A+ L Sbjct: 495 DGQPPVMSKLGSGDWENKKSKVKRQVKDIAKEL 527 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 63/428 (14%), Positives = 126/428 (29%), Gaps = 38/428 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q E M E Sbjct: 665 PMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQHYQSFRERMAEFP--- 721 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 R LS + +V +H + + + Sbjct: 722 ---VEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVASKDVEFNNLGLVVIDEEQRF 778 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + + +SATP L + V D T + + Sbjct: 779 GVAVKERLKTQHSNVD--------VLTLSATPIPRTLHMALVGVRDISNLETPPAERMAV 830 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V D +L I + ++ +DL ++ R+ H ++ Sbjct: 831 ETKVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIGHGQME 890 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +++ D +FD+L+ ++ GLD+P + + I D ++ G L Q GR Sbjct: 891 EGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGLS----DLHQLRGR 946 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + + E +R + EE+ G + D+ G Sbjct: 947 VGRYKHQ---AYCYLLVSPNKRLTPEASKR----LRAIEEYSQMGAGFAISMRDLEIRGA 999 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF---EEAAQI 658 + V +M + L+ + + + L + + +++ EA Sbjct: 1000 GNLLGSQQSG-------HIAAVGYEMYCQLLEDAVRQAQKLPPKLSADVDIDLPIEAYLP 1052 Query: 659 RDQLHQLR 666 D + LR Sbjct: 1053 EDYVPNLR 1060 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 100/636 (15%), Positives = 174/636 (27%), Gaps = 142/636 (22%) Query: 38 LGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQ 97 GV G + A + +VL P A + G++ F E+ V +S D Sbjct: 118 SGVWGGIRGLLAAALTRHHPH-VLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAGDGTG 176 Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR----DVVVVAS--VSAIYGLGDP 151 +S+ + RL + + R +VV S +AI + Sbjct: 177 ---------------SSIRDADYAARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSV 221 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 K L VG I+D I R LAE +A G F RG ++D++ Sbjct: 222 TSLEKATRELAVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSP-DQPQP 280 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 +R+E FD+E+E + FD T + T+ + + Sbjct: 281 IRIEWFDDEIESIRRFDAATQRSSETLSKVELAAIGTQPVKS------------------ 322 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E E L E T+ DYLP Sbjct: 323 -PFAEEENNDEPLDLVVDDTVGAE---------------------------ATIVDYLPE 354 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 D +++V + + R + E + Sbjct: 355 DTVVLVIDPSDCHQSSNALLARVAKT----------------ERFVSMRELLSELKSHKV 398 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 V+ T + G D V T D D ++ V+V Sbjct: 399 VTGT------SLAEGAPSDVVDLHTASADSFATSLDETKSKVDSVAA-------GHEVIV 445 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T + LTE LE+ + G + V L G Sbjct: 446 VGDTPADGQRLTELLEDTD--------------------AAKQGRLHMTVAD--LSGGFR 483 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + + ++ + A+ RS ++ R K I + Sbjct: 484 LTDAEILVLTGAELF-----HRSPVRRAKTRTRG-----------------KPIDSFTQL 521 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + HGI + +++ G P V + Sbjct: 522 TPGDLVIHLSHGIGLYRGLNSIEKNGQHQEHLTIEFDGGTKIHVPASRIQLVQRYVGGTK 581 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + K+ ++ G+ + + + D+L +L+ Sbjct: 582 NRPKLAKIGGISWTNQKKAAEAAVTDMADELLELQA 617 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 112/313 (35%), Gaps = 21/313 (6%) Query: 312 FLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 + G+ ++L ++VV + + D + L E L Sbjct: 104 YTLAVYGGKSISHQINFLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLE 163 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDP 421 + + + Q + SAT L+ + + + + Sbjct: 164 MGFIDDIEEIMSYLPEDRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQ 223 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 II + L + Q A E+V++ T TK A++L E L E G +H D Sbjct: 224 IIYRVNPRDKFKKLTEVLSQNEA--EKVIIFTQTKIEADELAERLNEEGFNASAIHGDFS 281 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R ++ + R G+ +LV ++ GLD+ V LV G R S I IGR Sbjct: 282 QKKRETVLHNFRTGKLKILVATDVAARGLDIKGVDLVINY-----GLPRDAESYIHRIGR 336 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ +TPS K + +++ + + E + L+ D + + Sbjct: 337 TGRA--GREGTAISIMTPSEDKQLQNIQKKTKANIEVINEAQE--KKLSSAQKDKSSQKE 392 Query: 602 NIAKTKAKGRGKS 614 ++ + + R +S Sbjct: 393 RSSRNQTRRRQRS 405 >UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micromonas sp. RCC299 RepID=C1EIE9_9CHLO Length = 576 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 105/325 (32%), Gaps = 48/325 (14%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G G + + P L D+L + + + ++V + + M Sbjct: 229 MYSVCLYGGAPKGHQLRELRHGPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLD 288 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + K + QT++ +AT + + + + + Sbjct: 289 MGFEPQIR-----------------KILQRAPAQRQTLFFTATWPRAVVRVATAILTNPI 331 Query: 413 VRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 G D ++EV + L+ +R + +V TK+M + + Sbjct: 332 QVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEVLRNPPTQPLKAIVFCGTKKMCDQIG 391 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + G +H D + ER I+ R G VLV ++ GLD+ EV++V D Sbjct: 392 RSMGGMG---AVIHGDKEQRERDWILNQFRSGRVPVLVATDVAARGLDIKEVNMVVNFD- 447 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F + IGR R G A + + +MA+ + R Sbjct: 448 ----FPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEGNMARKLIPILR------------ 491 Query: 583 GITPQGLNKKVVDILALGQNIAKTK 607 Q + ++ D+ G K Sbjct: 492 -DAGQDVPAELDDMARRGGGSGKPS 515 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 32/267 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + +++ + + M + K Sbjct: 514 TPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIR-----------------KII 556 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QT+ SAT + + D + G + I+EV + Sbjct: 557 SQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKK 616 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + +LS +E+V+V T++ +DL L+ G + +H + ER ++ Sbjct: 617 ERMLS-FLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQF 675 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G +++ ++ GLD+ ++ V D F + I IGR AR +G + Sbjct: 676 KNGMVPIMIATDVASRGLDIKDIKYVVNYD-----FPNTIEVYIHRIGRTARAGASGVSY 730 Query: 552 LYGDKITPSMAKAIGETERRREKQQKY 578 +A + + +++ Sbjct: 731 SLLTTDNARLANELIKVLTEAKQKIPI 757 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 93/300 (31%), Gaps = 34/300 (11%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQI 347 + G ENY ++ G P L D + + + ++ + + Sbjct: 286 YKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEA 345 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + + P A T SAT + Sbjct: 346 DRMLDMGFEPQIRKIVGQGMPP--------------KTARTTAMFSATFPKEIQLLAKDF 391 Query: 408 VVDQVVR----PTGLLDPIIEVR----PVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + + V G IE R + +L+ + A N VLV TKR A Sbjct: 392 LKENYVFLAVGRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATN-LVLVFVETKRGA 450 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +L +L R +H D+ +ER + R G+F +LV + GLD+P V V Sbjct: 451 NELAYFLNRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVV 510 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + IGR R N G A + + + + + ++ Sbjct: 511 NYDLP-----GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVPE 565 >UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7_9CRUS Length = 843 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 57/358 (15%), Positives = 113/358 (31%), Gaps = 28/358 (7%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ-RLTQRTQFDLEMMN 298 + P + + ++ E+++ E + + R ++ Sbjct: 461 AAFLVPVVNILLEKQVQGAPSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKSVIV 520 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G + S P L D++ + + + + M Sbjct: 521 YGGTQVSHQKSSLMNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFGSD 580 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + + T+ SAT + + +G + D V TG Sbjct: 581 IEFIAQHPTMTPVGRRV-------------TLMFSATFPDDVQKIAGKYLHDYVFVTTGN 627 Query: 419 L-----DPIIEVRPVATQ-VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + D E V Q + L EI + N RV+V +K+ A+ + +L + Sbjct: 628 IGGMNPDVCQEFHEVQRQDKRNKLVEILRDLG-NSRVIVFVESKKTADFIAAFLANTQFQ 686 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H D +R + +R+ + G+ ++LV N+ GLD+ V V D + Sbjct: 687 ATSIHGDRLQSQREQALREFKSGQRNILVATNVAARGLDIAGVEYVINYDLPAD-----I 741 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + IGR R G++I + D A +R + + G+ Sbjct: 742 EEYVHRIGRTGRVGNAGRSISFYDP-DRDAPNAGRLVQRLVASEADVPSFLQSSVSGV 798 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/426 (17%), Positives = 131/426 (30%), Gaps = 42/426 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q T+ E M + Y Sbjct: 586 PMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPTTVLAEQHTRTFSERMAD--YPI 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF + + + + A + +V +H I + + + Sbjct: 644 TIEGLSRF----KSKKEQRAILEGMAAGSVDLVIGTHRLIQKDIKFKDLGLLIIDEEQRF 699 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G L L+ + + +SATP L S + D T D I Sbjct: 700 GVEAKEMLKRLRLQID--------VLTLSATPVPRTLHMSLLGIRDISNLTTAPRDRVPI 751 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 E R + + + + N +V + + +++ H + Sbjct: 752 ETRITRFDPELIRHAMVRELNRNGQVYFVHNRVHDLQKYADRIQQIVPEASIGIGHGQMK 811 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + G+ D+ V ++ GLD+P + + I DA G L Q GR Sbjct: 812 ETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLS----DLHQLRGR 867 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + +A Y M + +R K + E G G + D+ G Sbjct: 868 VGRSHH-RAYCYLLLRDGQM---LTPIAAKRLKAIEEYSELG---AGFKIAMRDLEIRGA 920 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAA 656 NI T+ G V ++ + L+ +L+ A +L A Sbjct: 921 GNILGTEQSG--------HIAAVGYELYCQLLENACRKLKNEPIREHHHVAIDLPC-TAY 971 Query: 657 QIRDQL 662 D + Sbjct: 972 LPSDYI 977 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/413 (14%), Positives = 120/413 (29%), Gaps = 44/413 (10%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI------------ADLQRP 59 P Q ++++ L L + SG++ TI L Sbjct: 3 TPRDSQIQSMQDLVPVLSRSDGFAAVTAALRSGQSGTIDGAWGGSCALAAASIATALDSV 62 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ P + + G++ F P+ +T ++ + + Sbjct: 63 LLIVLPRLSEIDEFTGDLASFLG--------------TIPEIFPAWETLPDEHDVADT-V 107 Query: 120 EQMRLSATKAML-----ERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAIL 173 RL + E V+V S A+ + VG ID A + Sbjct: 108 FGGRLRVLSRLQHSGGNESTPQVIVTSFPALLQPVPSRKQREAATRRIQVGDEIDTDAFM 167 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 + L E + R G F + G ++D++ +S + +R+E F +EVE + FD T + Sbjct: 168 KWLLERGFERTTAIQLPGEFSMHGGILDLYSPDSA-LPIRIEFFGDEVESIRQFDVETQR 226 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + T + + P + ++ + L +N E Sbjct: 227 TLETCQQVDLT--LISPVPASVSGRQLQTPNRDEDGTTSESLLDNLPPEACIALIELPEL 284 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 ++ G R + RG P T+ + + S + + Sbjct: 285 ID--------EGKRYLDRLENPRGLFSVPATMARCTDFPSVTIAPISAESTEISCHLQIE 336 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 R +++ + + EL+ S Sbjct: 337 SVERFTRSKSQMLEELASIIGPQDTVLVCCHNQGEQDRLQELLDESELDLSER 389 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 31/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + M + + + + Sbjct: 326 TPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVE-------------QND 372 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPV------AT 430 A QT+ SAT + + + + G D II+ + Sbjct: 373 MPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQESDKRS 432 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + DLL R ++ LV TK+ A+ L +L +G +H D ER + Sbjct: 433 HLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQA 492 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 +R R G +LV ++ GLD+P V+ V D + + IGR R + Sbjct: 493 LRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGKS 547 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQ 575 G A + ++ S+A A+ + + ++ Sbjct: 548 GLATAFFNEGNASLAMALADLMQESNQE 575 >UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9ETM9_ORYSJ Length = 468 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 34/285 (11%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D + + + +++ + + M + Sbjct: 187 FGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIK------------ 234 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIE 424 K QT+Y SAT + + + D G + +E Sbjct: 235 -----KIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVE 289 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + + L++ + + R+L+ TK+ + +T L G +H D E Sbjct: 290 ILSESQKYNKLVN-LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAE 348 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ + + G+ ++ ++ GLD+ +V V D F S + IGR R Sbjct: 349 RDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGR 403 Query: 545 -NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 G A + AK + E QK + E +G Sbjct: 404 AGAKGTAYTFFTAANARFAKDLINILE--EAGQKVSPELANMGRG 446 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 56/297 (18%), Positives = 96/297 (32%), Gaps = 12/297 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSA 371 + G+P L +VV I G R L E L Sbjct: 231 ILPIYGGQPYGAQLSGLRRGAHVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMG 290 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPV 428 + E Q SAT + S + V+ T IE + Sbjct: 291 FQEDVERILEDTPEDKQVALFSATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYL 350 Query: 429 ATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L + + + +++ TK E+L E L G ++ DI +R Sbjct: 351 IVHHREKLDALTRILEVTDFDAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRE 410 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + L+ G D+LV ++ GLD+ ++ V D R S + IGR R Sbjct: 411 RTVDQLKDGRLDILVATDVAARGLDVERITHVFNYDIP-----RDTESYVHRIGRTGRAG 465 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 G+A+L+ M K+I + R + + + K ++ ++ Sbjct: 466 RSGRAVLFVTPRERRMLKSIERATKSRLNEIELPSVDQVNEARKAKFNRELTKNLED 522 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 96/312 (30%), Gaps = 34/312 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + + M A K Sbjct: 134 TPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPAL-----------------KKIV 176 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-------VATQVD 433 T SAT + + + + + ++ Sbjct: 177 SKIPRKRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKR 236 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L E+ ++ + R L+ T T+ A+ L +L +H D R ++R+ R Sbjct: 237 LLTLELLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFR 296 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ VLV ++ G+D+ +V LV D +E + IGR AR G+AI Sbjct: 297 SGKTPVLVATDIAARGIDVKDVRLVINYDLPEE-----PEVYVHRIGRTARAGAAGQAIA 351 Query: 553 YGDKITPSMAKAIGETERRREKQQK----YNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 A+ + + R E P+ K+ + + Sbjct: 352 LCSPEEIRKARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPR 411 Query: 609 KGRGKSRPIVEP 620 KG G++ E Sbjct: 412 KGYGRNGSRAEA 423 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 100/296 (33%), Gaps = 17/296 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + + G + +R G P + D L +V+ I Sbjct: 329 ILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRD-LRRGVEIVIATPGRLID 387 Query: 346 QIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + G + R L E L + + K QT+Y SAT + Sbjct: 388 MLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVESLA 447 Query: 405 GGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + G D IIEV + L S++ R+L+ TK Sbjct: 448 RQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRL-SKLLSDLMDGSRILIFFQTK 506 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + +T L G +H D ER ++ + + G+ ++ ++ GLD+ ++ Sbjct: 507 KDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIK 566 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 V D F + I IGR R +G A + ++ + + R Sbjct: 567 CVINFD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKILRE 617 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 129/408 (31%), Gaps = 37/408 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q Q E Y + Sbjct: 566 PMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAILVPTTVLAEQHFQTFTERFAA--YPA 623 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF + + L + +V +H + + + Sbjct: 624 VIEVLSRF----RSNSEQKRIVEDLQKGVVDIVIATHRLLSRDVKFKDLGLLVIDE---- 675 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 + + I +SATP L + + D V T + I Sbjct: 676 ----EHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSVIETPPPERYPI 731 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + + ++ + + +V + E L+E G ++ H + Sbjct: 732 TTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGRMK 791 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D G++ + + ++ GLDMP V+ + + +ADK G + L Q GR Sbjct: 792 EDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQ----LYQLRGR 847 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y T I E ++R + E G G+ + D+ G Sbjct: 848 VGRSHR---LAYAYL-TYRPDWVISEASQKRLNAIREFNELG---SGMKIALRDLEIRGA 900 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 NI + G V D+ + L+Q+ L+G +Q + Sbjct: 901 GNILGAEQHGY--------IQAVGFDLYCRLLEQETGRLKGEQVQENR 940 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 77/375 (20%), Positives = 140/375 (37%), Gaps = 31/375 (8%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 G+ + L G++GS K F ++ ++ R + L P + A L +++ F + Sbjct: 13 GVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRL 72 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 F++ Y+ E S + + S+ ++ R SA ++ S IY Sbjct: 73 FMFLARDFYFAKENL---STLEVGRILSLQHCLDHPRQSAI---------IIATPGSFIY 120 Query: 147 GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAE 206 L P + L L G +QR IL++L Y R D ++G F VRG +IDIFP Sbjct: 121 PLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLG 180 Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIP-RFTIYPKTH----------YVTPRER 255 + RVE F E +E + FD + + + + I P + E Sbjct: 181 HKE-PCRVEFFGELIESIHRFDINSQRRLGKDEGQVKILPADELYGDELTCSIFSYLDES 239 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +E +E ++ + + L+E + ++++++ IE +S Sbjct: 240 SSVFFDEPREFYKQFKRSVRRYRESLKEACKDGKIIREIKLLDSEYLKKEIEAHSVIYHA 299 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P P + S + Y AR G ++ A+ +R Sbjct: 300 YFPSTIPQV-------AVTSLQHISQKEMEPFYRQYETLFARINDWQGKGLKVILAIKSR 352 Query: 376 PLKFEEFEALAPQTI 390 + + + L Q I Sbjct: 353 VAREQIQQDLLEQGI 367 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 127/375 (33%), Gaps = 16/375 (4%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L +N +L + + T+ + E E+ + G L Sbjct: 111 EKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKR 170 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + I G ++ + L E L + Q + Sbjct: 171 KVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMV 230 Query: 391 YVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA-IN 446 SAT N + + D +++ +I + + Q L +++ N Sbjct: 231 LFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN 290 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E V++ TK + + E LE G V L+ DI +R + L+ G D+LV ++ Sbjct: 291 EGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVA 350 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ + LV D F + + IGR R G+AIL+ + + + Sbjct: 351 ARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNL 405 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE-PDNVP 624 + R + ++ I K++ ++ + K I++ DN+ Sbjct: 406 ENSTRTKIEEINIPSNKIIN----EKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLK 461 Query: 625 MDMSPKALQQKIHEL 639 S + + Sbjct: 462 EKHSMDDSNIAMAAI 476 >UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH Length = 712 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/348 (18%), Positives = 118/348 (33%), Gaps = 42/348 (12%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P H++ EE A +++ + L Q + + +F + + Sbjct: 322 AAFLLPMLHHILDN----NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAK 377 Query: 300 LGYCSGIENYSRFLSGRGPG-----EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 G L G P L D++ ++ ++ + + M Sbjct: 378 CCVAYGGAAGFHHLKTIHSGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMG 437 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 V + D T+ SAT N E + + + + Sbjct: 438 FLSSIKTVINHKTMTPTADRI-------------TLMFSATFPNEIQELASAFLNNYLFV 484 Query: 415 PTG-----LLDPIIEV--RPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEY 465 G D EV P + L+ + A +E++LV KR+A+ + Y Sbjct: 485 VVGSVGAANTDVKQEVLCVPKFEKKAKLVEMCEEILINADDEKILVFVEQKRVADFVGTY 544 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L E R +H D +R + + D R G F++LV + GLD+ + +V D K Sbjct: 545 LCEKNFRATTMHGDRYQAQREQALTDFRTGVFNILVATAVAARGLDIKGIGVVVNYDLPK 604 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-----ITPSMAKAIGE 567 E + IGR R G +I + D+ +T + K + E Sbjct: 605 E-----IDEYVHRIGRTGRLGNRGLSISFYDEEADVCLTKDLVKVLSE 647 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/376 (17%), Positives = 113/376 (30%), Gaps = 16/376 (4%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + G + ++ G+ L +VV I + Sbjct: 381 TRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVVGTPGRVIDHVKR 440 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 L E L E Q SAT + + + Sbjct: 441 GTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATLPKPIRKIADEYL 500 Query: 409 VDQVVRP------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D T + D L+ I + + V+V T TK + Sbjct: 501 NDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDG-VIVFTKTKDSTLSV 559 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E L + G L+ D+ R I L+ G+ DVLV ++ GLD+P +S V D Sbjct: 560 AEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLDVPRISHVFNFD 619 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S + IGR R G+AI++ + I T ++ + Sbjct: 620 LPHD-----SESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTKQPIEIIDIPTV 674 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 I + + I + + T K E PM+M AL + Sbjct: 675 ADINEARVRRFKQRITDVSADQDLTVYKDMIAQ--YAEESGKPMEMIAAALAEMSQNGRP 732 Query: 642 LMMQHAQNLEFEEAAQ 657 +++ + E + + Sbjct: 733 FLLKERPKKQRERSDR 748 >UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4FWG0_LEIMA Length = 923 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 103/332 (31%), Gaps = 27/332 (8%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + L Q + + G Y + P L D + L Sbjct: 552 LAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQRFEQDILVACPGRLRDMFNEEYL 611 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + M + + + QT SA Sbjct: 612 SFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVD-----------DRQTFMFSA 660 Query: 395 TPGNYELEKSGGDVVDQ--------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 T L + + + V T + IE P ++D LL I + Sbjct: 661 TFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSD 720 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 VL+ TK+MAED+ L G +H D +R + D + +LV ++ Sbjct: 721 M-VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVA 779 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD+P+V+ V D + IGR R G A + ++ +A + Sbjct: 780 SRGLDIPDVAHVVQFDLP-----QEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLALDL 834 Query: 566 GETERRREKQQ-KYNEEHGITPQGLNKKVVDI 596 + ++ K+ ++ +G D+ Sbjct: 835 HKYFSEHGQEIPKWFQQEAELVEGEALLSRDM 866 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 18/277 (6%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +++ I + L E L + + K Sbjct: 403 LERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDR 462 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QTI SAT + + + + G LD II++ + ++ Sbjct: 463 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSF 522 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + +++++ K A+DL+ L G + +H + D ++R + I D++ G + Sbjct: 523 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 582 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ +++ V D F + + +GR R G +I + + Sbjct: 583 LVATDVASRGLDIEDITHVINYD-----FPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 +MAK + E + E +Q+ +E + K + D Sbjct: 638 WAMAKELIEILQ--EAEQEVPDELHNMARRF-KAMKD 671 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/340 (17%), Positives = 111/340 (32%), Gaps = 34/340 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + + + M +D+ + Sbjct: 137 TPGRVIDHLNRRTLKTDGIHTLILDEADEM----------------MNMGFIDDMRFIMD 180 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLS 437 + A+ QT+ SAT + + T DP IE + + Sbjct: 181 KIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFD 240 Query: 438 EIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 E +V TKR ++LT L G + LH DI +R+E+++ + Sbjct: 241 TFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKND 300 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + ++LV ++ GLD+ VS V D + S IGR R G A+ + Sbjct: 301 QINILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVTFV 355 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + I + I + R+ + + + + ++K + Sbjct: 356 NPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVE---NWMSKKSESRLKRI 412 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + +D+ LQ+ + + L FE+ Sbjct: 413 STELLNEYNDVDLVAALLQELVEA----NDEVEVQLTFEK 448 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 100/305 (32%), Gaps = 22/305 (7%) Query: 329 LPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +VV + + + E L Sbjct: 119 LKRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGR 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------DPIIEVRPVATQVDDLLSEI 439 Q++ SAT E + D V+ I V + ++ L + Sbjct: 179 QSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + +V++ T TKR AEDL+ L + G LH D R ++ R G+ V Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ ++ V D ++ + IGR R G+A+ + Sbjct: 299 LVATDVAARGLDIDGITHVINYDLP-----QTAEDYVHRIGRTGRAGRTGRALSFFHPAD 353 Query: 559 PSMAKAIGETERRREKQQKYN---EEHGITPQGLNKKV----VDILALGQNIAKTKAKGR 611 + ++I + ++ E + + D G+N +T + Sbjct: 354 RDIVRSIETMAGKPIPHSPHSIPLSEQSLRKTFTRRPSFGRPQDRTPRGENRFRTDRGQQ 413 Query: 612 GKSRP 616 G+ R Sbjct: 414 GRPRS 418 >UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family n=11 Tax=cellular organisms RepID=B3CMR4_WOLPP Length = 408 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 114/356 (32%), Gaps = 37/356 (10%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + E ++L ++ + G + + P + D++ L Sbjct: 82 LAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKPQIIIGTPGRIIDHIERKTL 141 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + + M+ + + + QT+ SA Sbjct: 142 VTRNVGILVLDETDRMFD-----------------MGFGIQIEEIMKHLPKIRQTLMFSA 184 Query: 395 TPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T ++ + + + + + + L++++ QR Sbjct: 185 TLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRK---G 241 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +++ TKR A+ L + L + +H D+ +R +I R G ++V ++ Sbjct: 242 SIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 301 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 GLD+P + V D +S+ + IGR AR G A+ + A+ Sbjct: 302 RGLDIPHIQHVINYDVP-----QSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPALA 356 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + +E + ++ + K L + K K ++E Sbjct: 357 D----KEGEPNFDCSMQSQKRNSKKIFKRPSTLKAKYGRKKINVFKKKSRVLEKAY 408 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 120/304 (39%), Gaps = 28/304 (9%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 + G S K A + A P +++ P++ + +++ F + + YF Sbjct: 61 PIMISGAGDSQKALLTA-MAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDLHLYYF---- 115 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPD 152 P + K + R+ ++L+ R V+A+V A + P Sbjct: 116 ---------PLVEETGFKVTFSGTERLRDRMRGLASLLDGRRSAVIATVVEAAQKIISPS 166 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 L+ ++ + +G +I++ ++ +L +L Y R DQ + G F VRG+++DIF A ++ Sbjct: 167 GILENLMTIHMGEVIEREILVGKLVKLGYERVDQVERCGHFSVRGDIVDIF-AINESHPF 225 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 RVE FD+EV+ + +F+ T + + +I P + I L + R Sbjct: 226 RVEFFDDEVDGIRVFNEDTQRSIDIRDDISILPAV-------IRGECSSSILSYLNSGRI 278 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + E L + + E + +G+ R LF +L D Sbjct: 279 FYDEPQRCEE--ELKKYFHEEAENKEKAFDWAGLVKTGR---SGRKYRNREILFSFLKRD 333 Query: 333 GLLV 336 L Sbjct: 334 ADLF 337 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 92/308 (29%), Gaps = 34/308 (11%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + +SATP L S V D V + V Sbjct: 711 EQRFGVMQKEKWKSWSKKLDILTLSATPIPRTLHMSLTGVRDMVAMTQPPANRHAIQTYV 770 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEE---HGERVRYLHSDIDTVE 484 D ++ + I A + + +L + + + +D Sbjct: 771 TEYDDTIVKDAILHEKARGGQTYFIYNRIESIRAMEAHLRDILPSDVTIAVAYGQMDGRT 830 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +I+ D ++DVL+ ++ G+D P + + + DADK G + + Q GR R Sbjct: 831 LEKIMVDFFEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGLSQ----IYQMRGRVGR 886 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NI 603 + + K + E +R + E G G + D+ G N+ Sbjct: 887 SEKIARAWFFY----RQGKVLSEAAEKRLNTIREFTELG---SGFKIAMRDLEIRGAGNL 939 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE---------GLMMQHAQNLEFEE 654 + G V L+ + L M L ++ Sbjct: 940 LGAEQHGN--------IAGVGFATYCNMLEDTVSRLRAERENKPVPKKMPDTTVELR-QD 990 Query: 655 AAQIRDQL 662 A D + Sbjct: 991 AYLDEDYI 998 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 99/358 (27%), Gaps = 55/358 (15%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L GE ++ YL + + DE ++ + + KE Sbjct: 254 ISILPAVIRGECSSSILSYLNSGRIFY-DEPQRCEEELKKYFHEEAENKE---------- 302 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 A D L + + + + D + Sbjct: 303 KAFDWAGLVKTGRSGRKYRNREILFSFLKRD--------ADLFKVKETATWKGRTMVNYQ 354 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ +++ + ++ T + ++L +YL ++ V S Sbjct: 355 RQISLFFNDLTRLLKEGWSAVILTPRRSERKELEQYLSDYHVPV----SQKVQ------- 403 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + V + +L G ++P+ + I D G Q R GK Sbjct: 404 ------KGKVTLYNGVLSGGFELPDAKMAFITAGDIFGK--------QKARRYKAGGKGK 449 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 I Y + P +R KY I +G+++ + I G + + Sbjct: 450 QIRYFSDLEPG-----DYVVQRVHGIGKYIGVKTIELEGVHRDYITIQYAGADKLYLPME 504 Query: 610 GRGKSRPIVEPDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + P+ M + + + + + A+ L A ++ + Sbjct: 505 QIASLEKYIGPEGQTPALHRMGGVQWDKVRRKAKKSIEELAEKL---LAVYADREITE 559 Score = 42.1 bits (97), Expect = 0.072, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 56/163 (34%), Gaps = 6/163 (3%) Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYEL-EKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 A Q + P + V + + +D +I + Sbjct: 556 EITEGISFLPDTAEQREFEDTFPFVETDDQLEAIQAVKRGMERPQPMDMLICGDVGFGKT 615 Query: 433 DDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + + + + +V T + + ++ G + L+ E+ EI Sbjct: 616 EVAMRAVFKCVMSGFQAMVLCPTTVLSSQHYKTFKGRMDSFGINIALLNRFTTMREKKEI 675 Query: 489 IRDLRLGEFDVLVGI-NLLREGLDMPEVSLVAILDADKEGFLR 530 + L GE DV++G +L + ++ + L+ + + + G ++ Sbjct: 676 LSKLASGEMDVVIGTHAVLSKKIECRHLGLLVVDEEQRFGVMQ 718 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 115/332 (34%), Gaps = 15/332 (4%) Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYR 352 ++ + + + G G L +V+ + I G Sbjct: 88 IDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLLSHIKLGTVD 147 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + L E L + ++ + QTI SAT + + D Sbjct: 148 LSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTLAKTILKDPE 207 Query: 413 VRPTGLLDPIIEVRP-----VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 + P + Q +L ++ + +RV++ + +K ++L L+ Sbjct: 208 EVKIAISRPPESIMQTAYICYDPQKLKILQDLF-TQSRPQRVIIFSSSKMKVKELASTLK 266 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 V +HSD++ +R E++++ + G D+LV +++ G+D+ ++ LV D + Sbjct: 267 RLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHD- 325 Query: 528 FLRSERSLIQTIGRAARNVNGK--AILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + IGR AR NG+ AI + + K I + + + + E G Sbjct: 326 ----PEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEVYKIPVSPEFGEV 381 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 P + + G+ + S P Sbjct: 382 PL-YEPEKYGMNKRGRGRPRKSEDKGSSSSPQ 412 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 84/615 (13%), Positives = 196/615 (31%), Gaps = 83/615 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 ++ + + ++P ++ N+ A+ LY E+K V Y+ Sbjct: 27 LSVVQEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHLDENANVVYYN--------- 77 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA-SVSAIYGLGDPDLYLKMM 158 ++ + +E ++ R+ A ++ + + +++++ L ++ + Sbjct: 78 ----HEESLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASI 133 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 +++ G + + R L L Y R + T+ +RG V D+F + + LR+E FD Sbjct: 134 INIKTGDEWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQ-PLRIEFFD 192 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 EV+ L FD + +S + TI T + I + + ++ L + Sbjct: 193 VEVDSLRYFDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIH- 251 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ +++ L Q QFD+ + L + S NY+ + + + Sbjct: 252 EMEQKRELLQMNQFDVTLYPLLSFWS---NYATIYDYLKDANTYMSPIEAIERTLKQNAL 308 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +SH I + M + F A FE + SA + Sbjct: 309 DSHTFIEEQYEMNQMIFVSDIF---ESFERIKAKHTHREIFEYQTEGEVFIPWHSANIVS 365 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 +E++ + + + + + ++D + + Q + +V Sbjct: 366 ESIEQTMKWLKKEAIT------QKVIITLDEDTMEDFIKIMLQ-QGVEYQV--------- 409 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 LT+ +G + Y H + G + +++ V Sbjct: 410 ---LTDKPTSNGIYIDYGH----------------------------ITSGFILEDLNTV 438 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + + +A S + R+ KY Sbjct: 439 VYTANELYKYKKKMFRYDNKFLKAE-----------SLSQLSDLDTLDYVVHRQYGIGKY 487 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQK 635 +G++K + IL + + R + + + + Q+ Sbjct: 488 MGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLSKLGTSTWQKN 547 Query: 636 IHELEGLMMQHAQNL 650 ++ + A L Sbjct: 548 KERIKQDVADVADKL 562 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 55/402 (13%), Positives = 132/402 (32%), Gaps = 35/402 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A Q + E +++ + Sbjct: 614 VPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHARTLKERLSD--FP 671 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE +RF+S + E + D + ++ +H + + + Sbjct: 672 VTIEVLNRFVSDKEKNEIIQRVKD----GKVDILVGTHRVLSRDVKFKDLGLLIIDEEQR 727 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + ++ + +SATP L+ S + + + Sbjct: 728 FGVEHKERIKEF--------KVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLP 779 Query: 424 EVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDI 480 + + + +++I + + +V + + H V +H + Sbjct: 780 VMTYIIEKNQKTINDIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQM 839 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + E +++ E +VLV ++ G+D+P + + + +A + G + L Q G Sbjct: 840 ERHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQ----LYQIKG 895 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y + P+ + + E ++R + K + G G + D+ G Sbjct: 896 RVGRSDR---LAYAYFVVPNK-RGLTELAQKRLQAIKEFTQLG---SGYKIAMRDLTIRG 948 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + D V +D+ + L++ I + +G Sbjct: 949 AGELLGGNQSGF-------IDTVGIDLYVQLLKEAIAKRQGK 983 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 65/417 (15%), Positives = 137/417 (32%), Gaps = 28/417 (6%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + + F P Q E + + E ++ H ++ G GS + A + ++ Sbjct: 1 MMQLKTIKETFLPDMLQNEFGKEIFENIDQ-FRHLSVKGSAGSAPSIFAAELFVTRKKTV 59 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 + L +K A EM++ + V YF P++ + Sbjct: 60 LFLIEDKEDALYATAEMEDLLGKENVLYF-------------PATHLAPYQIEKTQNANL 106 Query: 121 QMRLSATKAM-LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAE 178 +R + ++ V++A S++ + + + + VG +D L + Sbjct: 107 VLRTDVLNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFTGELLQQ 166 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 + D + G F VRG ++D+F S++ R+ F E+E + F+ T + Sbjct: 167 FNFQLTDFVSEPGEFSVRGGIVDVFS-YSNEEPYRISFFGNEIESIKTFNIETQLTNGKV 225 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE----QRLTQRTQFDL 294 F + +Y ++ + +L K+ + + D+ Sbjct: 226 NEFQLVSNMNYAVSGSKVSLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDI 285 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + E + + ++ + AD LL+ + Q G ++ Sbjct: 286 KHQPPAELFVSEEEFLKDIAAFKHIDFTLDTLKTSQADTLLI----QLNQTQQPGFHKNF 341 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 E LVE + D E + + I+ + + S V Q Sbjct: 342 ELLLEDLVEKR---NANFDIWISFSTEKQKERLEAIFKEISTPQEMISDSEDLPVFQ 395 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 95/262 (36%), Gaps = 23/262 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQR 442 T+ ++ATP L+ S D V T + +E V + + I Sbjct: 722 KNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFSEEIIRDAISYE 781 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 + +V +D+ ++ + + H ++ + + D G++DVL Sbjct: 782 IQRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMEGKQLERNVLDFMEGKYDVL 841 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I DA + G L Q GR R+ + ITP Sbjct: 842 VSTTIVESGVDVPNANTMFINDAQRFG----MADLHQMRGRVGRSNR---KAFCYLITPP 894 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 + R+R + + + G G + D+ G ++ + G Sbjct: 895 FD-MMTSDARKRLEAIEQFSDLG---SGFQIAMKDLEIRGAGDLLGGEQSGF-------- 942 Query: 620 PDNVPMDMSPKALQQKIHELEG 641 + + D K +Q+ + EL+ Sbjct: 943 INEMGFDTYQKIMQEALEELQN 964 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 60/140 (42%), Gaps = 6/140 (4%) Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK-- 456 + EK+ DV + + T ++D +I + + + + A ++V + T Sbjct: 579 PDQEKATLDVKTDMEKET-VMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTIL 637 Query: 457 --RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMP 513 + E L++ + Y++ ++ E ++ L G+ D+++G + L+ + Sbjct: 638 AFQHYRSFKERLKDFPVNISYMNRFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFK 697 Query: 514 EVSLVAILDADKEGFLRSER 533 ++ L+ I + K G ++ Sbjct: 698 DLGLLIIDEEHKFGVAVKDK 717 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 137/435 (31%), Gaps = 31/435 (7%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPR-----ERIVQAMEEIKEELA---ARRKVLLENNKLL 281 T + + + P V P + I QA + A + + Sbjct: 13 QTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIEKIDYKLSKT 72 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + L + L++ EL R ++ GE F L + L++ Sbjct: 73 QSLILCPTRELTLQVYEELKKLLRYYPQIR-IAVVFGGESYTKQFRALESKPHLIIATPG 131 Query: 342 VTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I I A K + E L + QT+ SAT Sbjct: 132 RVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQTVLFSATLPPSI 191 Query: 401 LEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 + + + + + IE + D + + + ++ T Sbjct: 192 KQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLKRDYSTILFANT 251 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ +++T +L++ G +H D+ +R ++ + R G+ +L+ ++ G+D+ ++ Sbjct: 252 KKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATDVAARGIDISDI 311 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 +V D E + + IGR R G A + S K + + + K Sbjct: 312 KMVVNYDLPHE-----DEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKLEYYLKEKVK 366 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + I K++++ K + P++E +Q Sbjct: 367 FLEIPSVEEI-----KKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFS-----SEQ 416 Query: 635 KIHELEGLMMQHAQN 649 I L + A+N Sbjct: 417 IIQGLLTNIQPKAKN 431 >UniRef50_UPI000197B5E2 hypothetical protein BACCOPRO_02808 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B5E2 Length = 269 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 15/214 (7%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 L GV S + + V+ R + + + A Y ++ + + + +F S Sbjct: 29 RTIFLEGVHASCTSLFASGVVKSADRVHLFILNDLEEAGYFYHDLVQVDGDEHILFFPSS 88 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DP 151 Y + E +R + + +VVV A+ Sbjct: 89 YRRAIKYGQ-------------KDAANEILRTEVLSRLEKDEPLVVVTYPEALAEKVVSR 135 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + L VG ++ IL L E + D ++ G F +RG ++D++ S+ Sbjct: 136 NELTDRTMKLQVGQHVETEEILSTLTEYGFEHVDYVYEPGQFAMRGSILDVYSFASE-YP 194 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 R++ F +E++ + F+ T +I P Sbjct: 195 YRIDFFGDEIDSIRTFEVETQLSKEKKDSVSIVP 228 >UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickettsia RepID=A8F2F8_RICM5 Length = 415 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 104/314 (33%), Gaps = 13/314 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 GEP P F L + +++ I G + DR L E L + + Sbjct: 107 GEPMPKQFMQLKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLE 166 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDD 434 + +F Q + SAT + + S + + V G + I+ + + Sbjct: 167 EINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKE 226 Query: 435 LLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 SE+ +Q V++ TKR A+ L + L+ +H D+ +R +I R Sbjct: 227 KFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFR 286 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 ++V ++ GLD+P V D + IGR R G A+ Sbjct: 287 KSNHRIMVATDVAARGLDIPHTQHVINYDLPM-----CPEDYLHRIGRTGRAGATGYALS 341 Query: 553 YGDKITPSMAKAIGETERRREKQQK--YNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + AI + E + + + + K+ + ++ + Sbjct: 342 FISPDDVIRWHAIDRLVNKGESTLRSEFRSDKNNRKRSFGKRAGGDGKKFNSFDSSRKRT 401 Query: 611 RGKSRPIVEPDNVP 624 + + V Sbjct: 402 FDGNSYGNKRKKVS 415 >UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD Length = 1142 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 20/253 (7%) Query: 21 IRRLEEGLEDGLAH--QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +R + G + G GS F + ++ + P VL P++ AA L +++ Sbjct: 19 LRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLE 78 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV-NEHIEQMRLSATKAMLERRDVV 137 + E + VP++ + + R A + + E + + Sbjct: 79 QLVGE-----------PDEAILRVPATQKTPYDPDQIADSTPLIERADALQRLAEGFEGI 127 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +V SV A+ L P + L + G I A+ RL E ++ + + G F R Sbjct: 128 LVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARR 187 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G ++D+FP + +R++ F +EV+ L FDP T + VS + + P RE Sbjct: 188 GGILDVFP-YAGTYPIRIDFFGDEVDGLREFDPQTQRSVSRLTTARLVPN----LEREEA 242 Query: 257 VQAMEEIKEELAA 269 + + + L Sbjct: 243 ARGSIALFQYLPD 255 Score = 163 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 63/404 (15%), Positives = 126/404 (31%), Gaps = 38/404 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P V + ++ A + + Q E M + Sbjct: 596 VPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQHHDTFSERME--RFP 653 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E SRF + + L + ++ +H + Sbjct: 654 VNVEVLSRF----RSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLGLLVVDEEQR 709 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + L + T+ ++ATP L+ S D + T + Sbjct: 710 FGVKTKEKLRKMREAID--------TLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQP 761 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + T +D++ + I + +V + ++ E + VR H + Sbjct: 762 INTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQM 821 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA-DKEGFLRSERSLIQTI 539 E +++ D + DVLV +++ GLD+ + + I A + G L Q Sbjct: 822 SASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSE----LHQLR 877 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ + + PS+ + + R R K + + G G + + D+ Sbjct: 878 GRVGRSQR---KAFCHLLVPSVHG-LTDDARERLKAVEQFSDLG---SGFDIAMRDLDIR 930 Query: 600 GQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G + + G ++V + K L Q + EL Sbjct: 931 GAGSLLGAEQSGF--------IEDVGYETYHKILDQAVKELREE 966 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/343 (19%), Positives = 112/343 (32%), Gaps = 40/343 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + + + + M L + Sbjct: 131 TPGRLIDHLERGNLDLSAIQYAVLDEADEM-----------------LSVGFADAIETIL 173 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPVATQVDDLLS 437 + A QT+ SAT + + + + VV G V + +V + Sbjct: 174 QQTPAARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRT 233 Query: 438 EIRQRA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + E+ +V T TKR A++L L G LH D+ +R + R Sbjct: 234 RVLADLLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRS 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G VLV ++ GLD+PEV LV + S + GR R G AI+ Sbjct: 294 GRVGVLVATDVAARGLDIPEVDLVVQYHLP-----QDPESYVHRSGRTGRAGRTGTAIVM 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + K++ K+V A K Sbjct: 349 YGDRENRELRNLEYRTGVQFKERPLPTP---------KEVQAASARASADLVRKVDSGVA 399 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQNLEFEE 654 + E + + ++ +AL + + ++ G +Q A L EE Sbjct: 400 ATFQAEAERLFSELGLEALARALAKISGVTEPVQAASLLSGEE 442 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 88/251 (35%), Gaps = 33/251 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L ++ + +++ + + M + + Sbjct: 231 TPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILG---------------- 274 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG--------LLDPIIEVRPVATQ 431 QT+ SAT + + V G + I+ V + + Sbjct: 275 -QIRPDRQTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKK 333 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 ++ L+ ++ ++VL+ TK+ E ++ L + G + +H D +R ++ Sbjct: 334 INQLIKQL-DCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNK 392 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + GE +L+ ++ GLD+ +VS V D F + + IGR R G A Sbjct: 393 FKSGECRILIATDVASRGLDVKDVSHVFNYD-----FPKVMEDYVHRIGRTGRAGAYGCA 447 Query: 551 ILYGDKITPSM 561 + + Sbjct: 448 VSFLTFEDDKK 458 >UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID=Q8IAU1_PLAF7 Length = 941 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 92/270 (34%), Gaps = 18/270 (6%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + + + M + + + + +P ++ Sbjct: 508 TPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSEN 567 Query: 381 EFEALAP-------QTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVAT 430 + E QTI SAT + + G + I+ V Sbjct: 568 KVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFV 627 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + ++ + + A N ++ TKR A+ + +L +H D ER Sbjct: 628 EEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERA 687 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 ++ + G ++LV ++ GLD+ + V D + I IGR R N Sbjct: 688 LKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPS-----NIDDYIHRIGRTGRAGNI 742 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQK 577 G A + ++ ++ K + T +Q Sbjct: 743 GIATSFVNEDNKNIFKDLLATLEECNQQIP 772 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 61/385 (15%), Positives = 121/385 (31%), Gaps = 25/385 (6%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + + E + ++ LT + +++ EL G + + G+ F Sbjct: 62 APIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKGDKKL--HIVPIYGGQSMTQQFR 119 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + +VV I + + L E L + + + Sbjct: 120 MLKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPD 179 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA 443 + ++ SAT L + + D + E + D + + Sbjct: 180 KRMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRII 239 Query: 444 AINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 I + LV TK L + L + G LH D+ ER +I+ R + ++LV Sbjct: 240 DIEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILV 299 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ G+D+ +++ V + S + IGR R G AI + Sbjct: 300 ATDVAARGIDIMDLTHVINY-----SLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYR 354 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 I +T + K+ + E + + ++ +N +E Sbjct: 355 RLTYIKKTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDC---------LEM 405 Query: 621 DNVPMDMSP--KALQQKIHELEGLM 643 ++ P K L + M Sbjct: 406 SEKFLEEYPAEKILAALLKYSFKEM 430 >UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoeba RepID=C4LZM8_ENTHI Length = 578 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 93/265 (35%), Gaps = 26/265 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L + + + ++ + M + + +P Sbjct: 269 TPGRLLYFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIREICEDNEMPPVGKR------ 322 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 QT+ SAT + + D V G + II + + Sbjct: 323 -------QTLMFSATFPKQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEEIKQE 375 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +L + + A ++ ++ TKR A+ L YL +HG +V +H D +R ++ + Sbjct: 376 AILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDFSLKRFK 435 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 +LV ++ GLD+P++ +V D E S + +GR R G AI Sbjct: 436 ENVIQLLVATDVASRGLDIPDIEVVINYDMPNE-----IESYVHRVGRTGRAGKKGTAIT 490 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + ++ T ++ + ++ Sbjct: 491 FINEKTQNLIPPLVSLLEEAKQTIP 515 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 104/316 (32%), Gaps = 15/316 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K + L + +++ EL E S G+P L +V Sbjct: 71 KKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVL--PIYGGQPIDRQIRALKNGVDIV 128 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I + L E L + + + QT+ SAT Sbjct: 129 VGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSAT 188 Query: 396 PGNYELEKSGGDVVDQV----VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE--RV 449 + + + + ++ + L IE + D + + +E Sbjct: 189 MPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAA 248 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TK+ +++ E ++ G V +H D+ R++ +R + G D LV ++ G Sbjct: 249 IIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARG 308 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 +D+ V+ V D + S + IGR R G A M K I + Sbjct: 309 IDVESVTHVINYDLP-----QDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKH 363 Query: 569 ERRREKQQKYNEEHGI 584 + + ++ I Sbjct: 364 TKSKIIRKAVPTVDEI 379 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 102/291 (35%), Gaps = 16/291 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+ L ++V + IG K ++ E L + Sbjct: 104 YGGQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDD 163 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPV 428 QT+ SAT + + + P Sbjct: 164 IEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPE 223 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +++ L+S + I + +V TK+ +++ E L G + LH D+ ER + Sbjct: 224 TEKIEGLVSILNSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQT 281 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 I+ + G+ ++LV ++ GLD+P+VS V D ++ S I IGR R Sbjct: 282 IKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIP-----QNPESYIHRIGRTGRAGRE 336 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GKAI + + KAI E +R K++ E + K IL Sbjct: 337 GKAITLINYRERKLLKAIEEAINKRLKREILPEPVDLEEARFKKIAKKILD 387 >UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KEK5_TOXGO Length = 734 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 20/279 (7%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D L + + + + M + L+ F LP + Sbjct: 368 CDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIVESFDLPPSPTP 427 Query: 375 RPLKFEE-------FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE--- 424 + + + QT+ SAT + + D + G + E Sbjct: 428 QTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYLAVGRVGSTNEFIR 487 Query: 425 ---VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 Q LL ++ + ++ TKR A+ + +YL + +H D Sbjct: 488 QRLQYADEDQKLKLLVKLLRETEKG-LTIIFVETKRKADMIEDYLVDDDFPAVSIHGDRT 546 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E +R + + +LV ++ GLD+ V+ V D + + IGR Sbjct: 547 QQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLP-----TNIDDYVHRIGR 601 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 R N G A + ++ + + + ++ Sbjct: 602 TGRAGNLGLATSFVNESNKPILRDLLNLLEEAKQDIPSF 640 >UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Prevotella veroralis F0319 RepID=C9MMN8_9BACT Length = 1187 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 56/418 (13%), Positives = 119/418 (28%), Gaps = 25/418 (5%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 Q AI +++E + + L G+ S A + ++ + + + Sbjct: 8 KLYAILPQVGAITKIQE--DQQVRSIFLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEE 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Y ++K + PSS K + E +R Sbjct: 66 AGYFYNDLKTITMPED------GTSNTAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTR 119 Query: 130 M---------LERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R + +V SA+ + + L L+V ID + + L Sbjct: 120 LSALATEKGTTNRLPLYIVTDPSALSEQVVSKRQLDERRLSLSVNQHIDIVEVEKTLRSF 179 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 + D ++ G F VRG ++D++ S ++ R++ F +++E + F+ + + Sbjct: 180 GFTETDYVYEPGQFAVRGSILDVYS-YSGELPYRIDFFGDDIETIRTFEVESQLSSKKLE 238 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P T E V + + + K L +E T L + E Sbjct: 239 HIEVVP--ELATLLEEKVPFLHFLPSDSFLAFKDFLYVRDAIENIYKEGFTAQALTVQRE 296 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G + + +H + Sbjct: 297 GKTEVEQHELEQAFRKEGQLITASHFMNEALNYRRIEFGVTHSISDTAKKADGQHVTIQF 356 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD--VVDQVVRP 415 D ++ L +Y+ A + + + + P Sbjct: 357 NTTAQ-PLFHKNFDLLSKTLRDYL-LQGYKLYIFADSEKQTIRLKDIFESLSNPDMVP 412 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 139/433 (32%), Gaps = 39/433 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T ++ + P V + I+ A + Q Sbjct: 624 ATQELKQDMESAR--PMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQH 681 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 Q + + ++ +LS + + + L + ++ +H I + Sbjct: 682 YQTFKKRLKDMP------VRVDYLSRARSAKQTKQVIEDLAEGKINILVGTHKLIGKTVK 735 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + ++G L T+ +SATP L+ S Sbjct: 736 WHDLGLLIIDEEQKFGVTTKEKLRQL--------KTNVDTLTMSATPIPRTLQFSLMGAR 787 Query: 410 DQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D + T + I+ + + + + I + N +V ++ +++ Sbjct: 788 DMSIMRTPPPNRYPIQTQIASFSHEVIADAINFEMSRNGQVYFVNNRVGNLPEIANLIKK 847 Query: 469 HGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R H + E +II ++DVL+ ++ G+D+ + + I +A + Sbjct: 848 YVPDCRVAIGHGQMKPEELEKIIMGFMNYDYDVLLSTTIVENGIDISNANTIIINEAHRF 907 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P +A A+ R R + + G Sbjct: 908 GLS----DLHQMRGRVGRSNK---KAFCYLLAPPLA-ALNSDARHRLLALETFSDLG--- 956 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G N + D+ G N+ ++ G +++ + K L Q + EL+ Q Sbjct: 957 SGFNLAMQDLDIRGAGNLLGSEQSGF--------MEDLGYETYQKILSQAVTELKNDEFQ 1008 Query: 646 HAQNLEFEEAAQI 658 E E QI Sbjct: 1009 DLYAEEMNEGKQI 1021 >UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Tax=Entamoeba RepID=B0ED30_ENTDI Length = 535 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 34/267 (12%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + + + + M L + Sbjct: 277 CDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRM-----------------LEMGFEV 319 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVR 426 + QT+ +AT + + G + + G D I+EV Sbjct: 320 QVQDIIGQIRPDRQTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIVEVC 379 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + D ++EI +R ++VL+ TKR A++L L + RV +H D ER Sbjct: 380 QERDR-DSKMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERD 438 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA---A 543 + D + G + L+ +L GLD+ + +V + + + I IGR Sbjct: 439 RALSDFKSGAVNYLIATDLASRGLDIRNIEIVINYEMPSD-----IENYIHRIGRTGRMG 493 Query: 544 RNVNGKAILYGDKITPSMAKAIGETER 570 R+V G+AI +AK + + Sbjct: 494 RSVEGEAISLFTYADARLAKDLISVLK 520 >UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukaryota RepID=DBP3_NEUCR Length = 614 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 103/300 (34%), Gaps = 47/300 (15%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + S + + M + L+ G Sbjct: 316 TPGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKLILSG--------------- 360 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---------------------LL 419 QT+ +AT + + +++ G + Sbjct: 361 CPPKEQRQTLMFTATWPLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRI 420 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAA---INERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + +EV + L +++ ++R+LV L K+ A + ++L G +V + Sbjct: 421 EQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASI 480 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H D+ +R + + G VLV ++ GLD+PEV LV F + + Sbjct: 481 HGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVIN-----VTFPLTIEDYV 535 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 IGR R GKAI + + + ++ R +Q EE + KK D Sbjct: 536 HRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNIL--RAAKQPVPEELLKFGTTVKKKAHD 593 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 62/430 (14%), Positives = 134/430 (31%), Gaps = 40/430 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + E M E + Sbjct: 564 PMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPTTILAEQHYKSLRERMAEFPFT- 622 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + L + +V +H + + + Sbjct: 623 -----IARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKDVSFQNLGLVVIDEEQRF 677 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L S V D T LD + Sbjct: 678 GVEIKERLKQL--------RTTVDVLTMTATPIPRTLHMSLVGVRDISNLETPPLDRVAV 729 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 V+ D+L+ + + + ++ + E + L+ H + Sbjct: 730 ETKVSRWGDELIRHAVLRELSRGGQIFFVHNRVQDIELIAAKLQRIVPEAKIGIGHGQMG 789 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +++ D G+FD+L+ ++ GLD+P + + I +A++ G L Q GR Sbjct: 790 EGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFIDEANRYGLSE----LHQLRGR 845 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + +A Y + + +R + G G + D+ G Sbjct: 846 VGRYKH-RAYCYMLL---QPGRHLSPVAAKRLHAIEEFSHMG---AGFAISMRDLEIRGA 898 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 NI T+ G V ++ + L+ + ++ + + +++ + E Sbjct: 899 GNILGTQQSG--------HIATVGYELYCQLLETAVRRMKRMPSKMTIDVDVDLPGETYL 950 Query: 658 IRDQLHQLRE 667 D ++ +R+ Sbjct: 951 PDDYVNDMRQ 960 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 104/288 (36%), Gaps = 23/288 (7%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 R L + G T+ GV GS A + D+ P +V+ P+ + ++ Sbjct: 26 EFRELVTQIAAGRKG-TIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRT 84 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVV 138 F V+ P+ ++ + +++ I RL K + + ++ Sbjct: 85 FSSAEIVQ--------------FPAWESDRSERL-LHDEIYGRRLRVLKQLTHGPQPAII 129 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V S+ ++ + VG +D + + L ++ G F +RG Sbjct: 130 VTSIESLLQPVPSAANVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRG 189 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI----YPKTHYVTPR 253 ++D+F A + R+ELF +E+E + F+ T + + + I Y K Sbjct: 190 GILDVF-APDWEQPARIELFGDEIESIRQFEIGTQRSLHPLETVEITVLRYGKGQTGHFS 248 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + + A + EL + + LE+ L+ + LG Sbjct: 249 DYLPTASACVLIELERMKDSAEQYLDRLEKIEDKFGLHETLQKLQPLG 296 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 62/201 (30%), Gaps = 7/201 (3%) Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL-EKSGG 406 + + + A+ Q + + P + + Sbjct: 493 WQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSFPYEETTDQLTAI 552 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED----L 462 + + +D ++ + + + + +V + T +AE L Sbjct: 553 GNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPTTILAEQHYKSL 612 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG-LDMPEVSLVAIL 521 E + E + L E+ ++++ L+ G D++VG + L + + LV I Sbjct: 613 RERMAEFPFTIARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKDVSFQNLGLVVID 672 Query: 522 DADKEGFLRSERSLIQTIGRA 542 + + G + + L Q Sbjct: 673 EEQRFG-VEIKERLKQLRTTV 692 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 10/304 (3%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + L + + T+ + +++ + F G P L ++ Sbjct: 111 SFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVI 170 Query: 337 VDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I G L E L + + QTI SAT Sbjct: 171 VATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTIMCSAT 230 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR---AAINERVLVT 452 + + + + IE + D + + + E++++ Sbjct: 231 WDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLDKIVCHKDMEQIIIF 290 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR E L + L+E G + +LH D+ +R I++DLR G+ +LV ++ GLD+ Sbjct: 291 AATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAARGLDV 350 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 P +S V D R + IGR R G AI AI R Sbjct: 351 PALSHVINYDLP-----RQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINRYLDR 405 Query: 572 REKQ 575 + + Sbjct: 406 KMEA 409 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 103/614 (16%), Positives = 198/614 (32%), Gaps = 94/614 (15%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 ++ +G + R +V+A A + +++ + P P Sbjct: 28 LSAAGVALAWHRLA---PRRMVVVAEGDREAEAIANDLRWWLP-------------RIPV 71 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 A +P DT + + RL A ++++ +VVV +V A Sbjct: 72 ALLPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLVASAARLE 131 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L + G + + ++ L + Y R Q G + VRG ++D+ +R++LF Sbjct: 132 RLIVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLA-SPVRIDLF 190 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +EV+RL+ FDP T + V + R ++P + Q E LAAR + + Sbjct: 191 GDEVDRLAFFDPTTQRSVGDLERVELFPAREVRIDTDLAKQ-----LEALAARVPAVADR 245 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + L E + G+ PT+ D + L++V Sbjct: 246 VEAV------------------LAGREPPEPLVPLV----LGDVAPTVLDIVDEADLVLV 283 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + +R+ +E L AL + L E A + VSA P Sbjct: 284 PAKGMDAVIADRLVAEERSIREALAPTWGLEADALGSVSLMAEPERLRAVRARLVSADPA 343 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + + + IR V+V T Sbjct: 344 GFGARLG----------------------VSHRDLAGVFGRIRSARRDGVHVVVATHGSE 381 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A + + L E G V + + L V G++L+ +++ SL Sbjct: 382 RARHVAQRLGEEGIDV----------QLASVATCLEGHGVRVAAGLDLVES-VELEPASL 430 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 V I DA + R+ + T + + D + S + Sbjct: 431 VVIADA-SLVRPTAPRASVPTRTTGG-------LSFDDLVEGS------FVVHEAYGVAR 476 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM-DMSPKALQQKI 636 Y G++++ +++ + + P V + + + Q+++ Sbjct: 477 YRGLVRQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGSEEPRLTRLRGGDWQRQV 536 Query: 637 HELEGLMMQHAQNL 650 H + AQ L Sbjct: 537 HRARRAAQEVAQEL 550 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 27/290 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + +SATP LE S + D V T +D + V +++E IR+ Sbjct: 732 DVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPILTHVGPFDPAVVTEAIRRELLRE 791 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V R E + + R L H + + GE DVLV Sbjct: 792 GQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQFWHGEADVLVATT 851 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+ + + + A++ G + L Q GR R+ Y +T S Sbjct: 852 IVENGIDLARANTLIVDRAEQLGLAQ----LHQLRGRVGRSGRQ---AYAYLLT-STTGG 903 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNV 623 I + R + N + G G + D+ G + + G V Sbjct: 904 ISDIALERLRTVAENTDLG---AGYRIAMRDLELRGAGTVLGMRQSG--------HVSEV 952 Query: 624 PMDMSPKALQQKIHELEG---LMMQHAQNLEFEEAAQI-RDQLHQLRELF 669 ++ + + +++ ++G L+ +A + D + + Sbjct: 953 GYELYVRLVAEEVARMDGVEEPTPDREVALDVPVSALLAEDYVAEAETRM 1002 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + S + + + M L Sbjct: 128 TPGRLLDHLRRKTINLGKLSMLVLDEADQM-----------------LHMGFLRDVEDIM 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQ--VDD 434 Q ++ SAT N + + D V LD I +V T D Sbjct: 171 THIPKRRQNMFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQD 230 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL ++ ++ TKR A L E L G LH D+ +R ++++ + Sbjct: 231 LLCQLFDEYNP-FMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKK 289 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + LV ++ GLD+ V+ + D ++G S I IGR R G AI + Sbjct: 290 SKIQYLVATDVAARGLDIEGVTHIFNYDIPQDG-----ESYIHRIGRTGRAGETGMAITF 344 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 K I + + QK + G + +K Sbjct: 345 MTSRDRDELKIIEKVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKD 397 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 109/353 (30%), Gaps = 15/353 (4%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P Q L + + L + +++ E Sbjct: 30 QVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDKLTPERNTQALILCPTRELAIQVAEE 89 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARK 358 L + + L G+P L +VV + + R +A Sbjct: 90 LNKLAAHKRGVAIL-PIYGGQPIERQLRALAKGVQVVVGTPGRVMDHLKRGTLRLSQASM 148 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 L E L E + Q + SAT E S + + + Sbjct: 149 AVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVPPAIRELSKRFLREPEMLTVAQ 208 Query: 418 --LLDPIIEVRPVA---TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 L P IE Q D L + A + LV TKR A+++T +L++ G + Sbjct: 209 KMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAF-HKALVFCSTKRGADEVTTHLQQRGYQ 267 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH ++ +R +++ R DVLV ++ GLD+ +V V D + Sbjct: 268 SDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLDVDDVDAVINYDIPHD-----V 322 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR R G A + + I R R + + + Sbjct: 323 EKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRCTRARITEGRLPSLRDV 375 >UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 Tax=cellular organisms RepID=H669_METJA Length = 367 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 114/356 (32%), Gaps = 38/356 (10%) Query: 227 FDPLTG-QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 ++ + + S P V I + ELA + +E+ K + + Sbjct: 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + G + + P + D++ L + + + + Sbjct: 105 IA----------KIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILD 154 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M L K + + SAT L + Sbjct: 155 EADEM-----------------LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAK 197 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLT 463 + D + I + + + L + + LV TKR ++L Sbjct: 198 KYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYG--LVFCKTKRDTKELA 255 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + G + +H D+ +R ++IR + + +L+ +++ G+D+ +++ V Sbjct: 256 SMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 ++ S + IGR R GKAI ++ + I + + K+ K+ Sbjct: 316 P-----QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLKF 366 >UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax=Eukaryota RepID=DDX3_DICDI Length = 712 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 91/305 (29%), Gaps = 33/305 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 L D L + + ++ + + M + + F +P D Sbjct: 387 TTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDR------ 440 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-----VATQVDDL 435 QT+ SAT + + + + G++ + V + Sbjct: 441 -------QTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSY 493 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + L+ TKR + LT +L + +H D+ ER ++ R Sbjct: 494 LLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSF 553 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 LV ++ GL + V+LV D + + IGR R G AI + Sbjct: 554 ATPFLVATDIASRGLHIGNVNLVINFDLPTD-----IHIYVHRIGRTGRAGKKGLAISFF 608 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 ++ + + + + + P K V ++ KS Sbjct: 609 NEKNKPVGAELLKLMK---------ASNQDIPDWFEKMVHNLRMSKGPSNSKSNSPFNKS 659 Query: 615 RPIVE 619 Sbjct: 660 YNSHH 664 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 14/282 (4%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + + + + L E L E Sbjct: 44 LRRRPQIVVGTPGRVMDHMRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENR 103 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVDDLLSEIRQ 441 Q + SAT +E + + V T ++ + ++L+ + Sbjct: 104 QFLLFSATLPKAIMEIANKYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLID 163 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +LV TK+ +DL + L G + LH D+ + R ++ R G D+L+ Sbjct: 164 SNNF-KLMLVFCNTKKRVDDLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILI 222 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +V V D + + + IGR R G + + Sbjct: 223 ATDVAARGIDIDDVDAVFNYDLPID-----DEYYVHRIGRTGRANRKGTSYSFVCGKEIY 277 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + I + + I +N + +I + Sbjct: 278 KLRQIERYTNSKITKITIPTMDDIKGNKVNSILDEIKEEIKE 319 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 95/310 (30%), Gaps = 32/310 (10%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G + P L D++ A + + V + + M Sbjct: 166 GGAKPGPQARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAI 225 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------V 412 + Q + SAT +G + D Sbjct: 226 R-----------------QIMAKLPRQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVE 268 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 +P +D + + + D L + A ER +V T TK A+ +T +LE+ G Sbjct: 269 SKPVDRIDQQVLLLAPEEKKDKLAWLLADVAV--ERAIVFTRTKHGADKVTRHLEDAGIG 326 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H + +R + R G VLV ++ G+D+ VS V + Sbjct: 327 AAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNVSHVVNFELP-----NVP 381 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 S + IGR AR G AI + + I R G+ P L + Sbjct: 382 ESYVHRIGRTARAGAEGVAISLVEPSELPYLRDIETLIGRHLVPGGAQPVRGLAPPHLLR 441 Query: 592 KVVDILALGQ 601 + GQ Sbjct: 442 ARNQVARQGQ 451 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 116/352 (32%), Gaps = 15/352 (4%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + ++ + + K + + + T+ + + G Sbjct: 121 AAFVLPILHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYG 180 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEY 364 + G L ++V + I L E Sbjct: 181 SAMKDLYSVPLVGGAAYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEA 240 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLD 420 L + E QTI SAT + + D + T +D Sbjct: 241 DRMLDMGFADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAHID 300 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + + LL ++ + ++ T TKR +E++ E L++ + YLH D+ Sbjct: 301 EKVYFCDNFDHKNKLLEQLICDPERG-QAIIFTATKRSSEEVAERLQQWDHKACYLHGDL 359 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R I+ DLR G+FD++V ++ GLD+P ++ V D R + IG Sbjct: 360 PQSKRNRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLP-----RQVEDYVHRIG 414 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R+ R G AI + + + G R ++ + G+ P+ + K Sbjct: 415 RSGRAGRTGIAI---NLCSRDDRRQFGNIARYLKRDINEAQVEGLEPRFVEK 463 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 14/316 (4%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPS 370 + G+ L +VV I + + L E L Sbjct: 253 HVLPIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDHLERGSLDLSELKYLVLDEADEMLNM 312 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------ 424 + QT SAT S + D + Sbjct: 313 GFQEDVERILADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKSQQRTADNIHQQY 372 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + D L+ I + + +++ TK+ E+L E L G ++ D+ + Sbjct: 373 LLVNHHYKLDALTRILEVTEFD-AMIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQ 431 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + LR G D+LV ++ GLD+ +S V D + S + IGR R Sbjct: 432 RERTVDQLRDGRLDILVATDVAARGLDVERISHVVNYDIPHD-----TESYVHRIGRTGR 486 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G+AIL+ + ++I + ++ + + K I + Sbjct: 487 AGRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDEVNETRKAKFAQSITESLADP 546 Query: 604 AKTKAKGRGKSRPIVE 619 +G S Sbjct: 547 QVDLFRGLINSYAEEH 562 >UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Desulfovibrionaceae RepID=Q72AT7_DESVH Length = 1160 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 85/478 (17%), Positives = 157/478 (32%), Gaps = 35/478 (7%) Query: 21 IRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 L L G H + +G + N + D R +++ + A G + Sbjct: 4 FAALVRKLASKGCGHIEVTR-SGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTL 62 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR--DVV 137 F P+ + ++ V + N R++A A+ ++R V Sbjct: 63 FSPDASAGDSPLVKPRWESRWVV----MPQHPLGARNRDAWASRMAALFALGQKRVPQGV 118 Query: 138 VVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 ++ + + L DL+ L L G + +L + + + R + G VRG Sbjct: 119 LITVDNFLSKLPPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRG 178 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +++DI+P + LR+E F E +E + LFD + + + + P + V E Sbjct: 179 DIVDIYPPGYER-PLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAE--- 234 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 ++ + AR K L L EEQ G GIE + L Sbjct: 235 -----LRSKATARWKRLFSKGMLTEEQYA--------------GLLRGIERHGEGLMPGA 275 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 E P + ++LP D ++ + + + A + E G Sbjct: 276 YYEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAEEGGARQPRGLVLRD 335 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + + SA + V + G +D L++ Sbjct: 336 AAPVRQLYEEK---DSAGFEPLVMGVERTGVDMPERKLHGFVDLFPAPDARDRPWQALVA 392 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + A + RVL+ +R + E+ G L D M ++ R G Sbjct: 393 GLHRFVATHARVLLCFGNERGRRKFLKLAEQDGITPT-LRYDPKGRGLMAVVAPYRAG 449 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 63/444 (14%), Positives = 127/444 (28%), Gaps = 40/444 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 ++ + + P V + ++ A + Q Q Sbjct: 622 QDVLEDMDKPV--PMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 679 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G+ LS + + + ++ +H + + Sbjct: 680 TFRSRLAGFPVNVGM------LSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRLP 733 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + +G R L + ++ATP L+ S + + Sbjct: 734 NLGLLVLDEEQRFGVRHKEKLKQF--------RRNVDALTLTATPIPRTLQLSMSGIREL 785 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 V T + + + D L I + A +V + E TEY+ + Sbjct: 786 SVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLV 845 Query: 471 ERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 R H + E + GE DVLV ++ GLD P + + + A G Sbjct: 846 PDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGL 905 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + L Q GR R+ Y + P + + R R + + G Sbjct: 906 GQ----LYQLRGRVGRSDRQ---AYAIFVVPDADN-LSDIARER---MRVILDMDYLGAG 954 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + D+ G +A+ V +++ + L++ + L+G + + Sbjct: 955 FQVAMEDLRIRGAGNILGEAQSG-------HMTRVGLELFLEMLEEAVTRLKGDPPRESV 1007 Query: 649 NLEF---EEAAQIRDQLHQLRELF 669 E A + R+ Sbjct: 1008 ETELNIGIPAHIPEGYIEDARDRL 1031 >UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Tax=Coelomata RepID=DDX4_HUMAN Length = 724 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + ++ + + M + + +PS Sbjct: 422 TPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQR------ 475 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQV 432 QT+ SAT + + + + G + + ++ Sbjct: 476 -------QTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 528 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L+ +R +ER +V TK+ A+ + +L + +H D + ER + + D Sbjct: 529 EKLVEILRNIG--DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDF 586 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R G+ VLV ++ GLD+ V V D + + IGR R G+AI Sbjct: 587 RFGKCPVLVATSVAARGLDIENVQHVINFDLPS-----TIDEYVHRIGRTGRCGNTGRAI 641 Query: 552 LYGDKITPS-----MAKAIGETERRREKQQKYNEEHGITP 586 + D + + + K + + ++ + P Sbjct: 642 SFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIP 681 >UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosaccharomyces pombe RepID=DBP3_SCHPO Length = 578 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 94/271 (34%), Gaps = 31/271 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + ++ + + M + + + Sbjct: 292 TPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNI------------ISHTPD 339 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 + QT++ SAT + + D V G + I+E+ Sbjct: 340 PTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSK 399 Query: 433 DDLLSEIRQRA----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + +L + ++ ++++L+ L K+ A + L V +H D+ R++ Sbjct: 400 ERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTL-ARKYNVVGIHGDMSQGARLQA 458 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N 547 + D + G+ VLV ++ GLD+P+V LV F + + IGR R Sbjct: 459 LNDFKSGKCPVLVATDVAARGLDIPKVQLVIN-----VTFPLTIEDYVHRIGRTGRANTK 513 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKY 578 G AI + S A + R+ ++ Sbjct: 514 GTAITFFTPQDKSHAGELVNVLRQAKQDIPE 544 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 116/391 (29%), Gaps = 45/391 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I P VT ++ + ELA + L+ + ++ Sbjct: 45 QAQTGTGKTAAFGI-PLLEKVTSDRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPI 103 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 G G + + + P + D+L L + + + + Sbjct: 104 Y---------GGQSIGHQIKALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADE 154 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M L K + QT+ SAT + S + Sbjct: 155 M-----------------LDMGFIEDIEKILQQVNTNRQTMLFSATMPPPIRKLSNKYMN 197 Query: 410 DQVVRPT---GLLDPIIEVRPVA----TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + P I ++D L I ++ TK+ +L Sbjct: 198 NPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSETIDLG--IIFCRTKKGVAEL 255 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 TE L+ G LH D+ +R +++ R + L+ ++ G+D+ VS V D Sbjct: 256 TEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVAARGIDVENVSHVINYD 315 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S + IGR R G A+ ++I + Q+ Sbjct: 316 IP-----QDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSIEAEIKMTIPSQRIPSV 370 Query: 582 HGITPQG---LNKKVVDILALGQNIAKTKAK 609 + + +++D++ ++ A Sbjct: 371 EEVVEKQQHVWKGQIIDLIESEEDDAGLYDD 401 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 105/340 (30%), Gaps = 31/340 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + L + + + + M L + + Sbjct: 129 TPGRILDLVKRKCLHLESIEFLVLDEADEM-----------------LNMGFIDDIQEIL 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPVATQVDDLL 436 QT+ SAT + + + + ++ + L IE L Sbjct: 172 SHTPSERQTLLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRL 231 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + ++ TKR ++L + L+ G V +H D+ R+ + + Sbjct: 232 EALCRLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKE 291 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G ++L+ ++ G+D+ V+ V D + S + IGR R N +G A Sbjct: 292 GTLNLLIATDVAARGIDVEGVTHVFNYDLP-----QDVESYVHRIGRTGRANKSGTAYSL 346 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGR 611 SM K I + Q+ I + + ++ ++ K Sbjct: 347 VTPKDFSMLKQIQNVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAI 406 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + M K + + + ++ + + Sbjct: 407 ELTESYDAVSIISALMKMKFENEIVFDYSSNKLEAPKKED 446 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/409 (15%), Positives = 132/409 (32%), Gaps = 37/409 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + E + + Sbjct: 571 PMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFRERLE--VFPV 628 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SR P + + + + ++ +H + + + + Sbjct: 629 NVEILSRL----KPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRF 684 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +Y+SATP L + V T + + Sbjct: 685 GVLQKESFKKKYPHVD--------ILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPI 736 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 V +++ E IR+ +V E + E L + Y H +D Sbjct: 737 QTFVVEYNPEIIQEGIRRELERGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMD 796 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E++ + G+ DVL+ ++ G+D+P + + + +A+ G + L Q GR Sbjct: 797 DEELTEVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQ----LYQLRGR 852 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + + K + +R + K G GL + D+ G Sbjct: 853 IGRSYKQ---AYAYFLHAPLKK-LSLDSIKRLEALKEFSSLG---SGLRLALRDLEIRGA 905 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 I + G ++V + + L++ I+EL+ + +N Sbjct: 906 GKILGKEQHG--------HINSVGFYLYLQLLEEAINELKNSQGKSEKN 946 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 114/326 (34%), Gaps = 30/326 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + LE+ + ++ L G+ + +RP + + N+ Sbjct: 14 ILLEKVLRSSEFSNLEKEIN-SRSNIKLFGIYKGFFPLLFLYL-KRYKRPILWVTNNEED 71 Query: 70 ---AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 L +++ + +P + + ++ RL A Sbjct: 72 LSIWEDLQEDLEL--------------------SILPPYVHLPYERPLRSPQVQGKRLKA 111 Query: 127 TKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 ++ +VAS+ ++ Y L + K +L + VG I + I + LAE Y R Sbjct: 112 ISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFLAENLYQRTP 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q + G + +RG ++DIFP ++ +R+E F +E+ + F+ + + T + P Sbjct: 172 QVEKIGEYSIRGGILDIFPPLYEN-PIRIEFFGDEISSIRFFNLEDKRSIKTTKEVILTP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + ++ +E+ L + + + LE G + Sbjct: 231 ISELIEDKNEESYFLKN--KEIKTYLFSYL-PKDTILVFENHKASLALLEKWTGKGLANF 287 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPA 331 + ++ G L +++ Sbjct: 288 EKRRTKENLPEGLYLTDYELQNFISK 313 >UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) n=2 Tax=Eumetazoa RepID=B8A609_DANRE Length = 719 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 16/281 (5%) Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + +V+ Q+ + L E L + + +K QT Sbjct: 400 SGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQT 459 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQR 442 + SAT + + D ++ G LD + + D + + R Sbjct: 460 VMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHR 519 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++VL+ K A+DL+ L G V+ LH D + +R E ++D + G +LV Sbjct: 520 MEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVA 579 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 +L GLD+ +++ V D F R+ + +GR R G+++ + + Sbjct: 580 TDLASRGLDVHDITHVFNYD-----FPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRV 634 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 A + R Q EE + + K + G Sbjct: 635 AAELITILER--SGQDVPEELVLMAERYEKHRREKEMFGPR 673 >UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E7_PLAF7 Length = 742 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 33/254 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + ++ +V I + + ++ K Sbjct: 484 TPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLR-----------------KIM 526 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQ 431 Q ++++AT + + D V G ++ + + Sbjct: 527 TQVNKNKQLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDM 586 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL +++ N ++L+ TKR ++L + L H +H D ER I+ + Sbjct: 587 KKKLLDWLKENYENN-KILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNN 645 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + ++LV ++ GLD+ +S+V D + I IGR R GK+ Sbjct: 646 YKTDRCNILVATDVASRGLDIKNISVVINYDIP-----NTIEDYIHRIGRTGRAGKKGKS 700 Query: 551 ILYGDKITPSMAKA 564 IL+ K Sbjct: 701 ILFFSYDYYMPQKL 714 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 110/346 (31%), Gaps = 14/346 (4%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + + ++ + + +++ EL Y G R L G G+ L Sbjct: 62 DKVDTHKESVQGIVIAPTRELAIQVGEEL-YKIGKHKRVRILPIYG-GQDINRQIRALKK 119 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 ++V + I R L E L QT+ Sbjct: 120 HPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTL 179 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--I 445 SAT + + + + + P I+ + Q + + Sbjct: 180 LFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQS 239 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E +V TKR ++L+E L G +H D+ +RM ++R + G +VLV ++ Sbjct: 240 PELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDV 299 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 GLD+ V+ V D + S + IGR R G A+L+ K Sbjct: 300 AARGLDISGVTHVYNFDIP-----QDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I T +R+ + + + +N K Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKR 400 >UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA Length = 688 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 34/284 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + A+ + V +++ + + M + V Sbjct: 398 TPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKV-----------------M 440 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QTI SAT + + + + G LD +I++ + Sbjct: 441 LDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREK 500 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + + + +++++ K A+DL+ L G + +H + D +R + I D+ Sbjct: 501 FSTIKSFVRNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADI 560 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G +LV ++ GLD+ +++ V D F R+ + +GR R G +I Sbjct: 561 KSGAVHILVATDVASRGLDIEDITHVINYD-----FPRNIEEYVHRVGRTGRAGRKGTSI 615 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + MAK + + + E +Q+ +E + K + + Sbjct: 616 SFITREDWGMAKELIDILQ--EAEQEVPDELHNMARRF-KAMKE 656 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 60/389 (15%), Positives = 111/389 (28%), Gaps = 42/389 (10%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + P + + I R ++ E R Sbjct: 43 ASAQTGTGKTAGF-MLPALNLLATPHESRSRGPRILVLTPTRELA----AQVNEAARKYG 97 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + + G ++N P L D++ + + + + + Sbjct: 98 KFLRARTVSIVGGMPYPLQNKLLSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEAD 157 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L + E + QT+ SAT + + Sbjct: 158 RM-----------------LDMGFLPDVERICEQLSAERQTLLFSATLDGDIARIAQQIL 200 Query: 409 VDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + ++ + T + LL + +N + ++ T TKR A+ Sbjct: 201 KNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLIAPEVN-QTIIFTSTKRHADV 259 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L E L G + LH D+ R + LR G+ VLV ++ G+D+ ++ V Sbjct: 260 LAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVATDVAARGIDVHGITHVINY 319 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ----- 575 D K + IGR R N G AI + + + + I + R + Sbjct: 320 DLPKF-----AEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKIEQYTGNRLEASVIEG 374 Query: 576 -QKYNEEHGITPQGLNKKVVDILALGQNI 603 + P G + G Sbjct: 375 FEPKRPVKMDGPSGGRRDGHKAGGRGGFK 403 >UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana RepID=Q4W7T8_ARTSF Length = 726 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 28/248 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + M + Sbjct: 438 TPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMG-------------FMGEVKKVVYHGT 484 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQ--VD 433 + T+ SAT N E + + + + G + D + EV + + +D Sbjct: 485 MPVKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEIDAKSRID 544 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + ++ + LV +K+ A+ L L +H D +R E++RD + Sbjct: 545 RLLEILTEKE--GVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFK 602 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G ++LV + GLD+ V LV + + + IGR R G AI Sbjct: 603 SGHRNILVATAVAARGLDIKGVGLVINYELPTD-----IDEYVHRIGRTGRLGNTGHAIS 657 Query: 553 YGDKITPS 560 + + S Sbjct: 658 FFNPDKDS 665 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 122/415 (29%), Gaps = 39/415 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + Q E M GY Sbjct: 635 PMDRLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMA--GYPI 692 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF + A + ++ +H + + + Sbjct: 693 AIEMVSRF----RSRADQKKILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRF 748 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +SATP L + D V T + Sbjct: 749 GVKHKEVF--------KQMRSTVDVLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPI 800 Query: 425 VRPVATQVDDL-LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V T + L + +R +V + L E V H ++ Sbjct: 801 QTVVKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINLVAARLRELMPDVTIGVGHGQME 860 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ + G + +LV ++ GLD+P + + I AD+ G + L Q GR Sbjct: 861 AADLEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGADRFGLSQ----LYQLRGR 916 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + + + R+R + + + G G + D+ G Sbjct: 917 VGRFKHQ---AYAYLLLHRHTRL-LDVARQRLTAMRQHTQLG---AGFRIAMRDLELRGA 969 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA----QNLEF 652 + V ++ + L+Q + L+G A L+F Sbjct: 970 GNLLGAQQSG-------HIVGVGFELYCQLLRQSVARLKGEKTAAAIRASVKLDF 1017 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 96/245 (39%), Gaps = 22/245 (8%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPT-MVLAPNKTLAAQLYGEMKEFFPENAVEYFV 90 A L G+T S + + + P +V+A + A +L + F + + Sbjct: 7 RARHKLTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPHAQ 66 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------LERR------ 134 + + PE+ + D AS + +L AT+++ RR Sbjct: 67 TTLVF--PESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATAL 124 Query: 135 -DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 +V+V + A+ + + L+ G + +L RL +L Y G Sbjct: 125 PPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGH 184 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + +RG +ID++P + + R++ F +E+E + FDP+T + +T+ TI + Sbjct: 185 YAIRGGIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRLD 243 Query: 253 RERIV 257 + Sbjct: 244 PSKTG 248 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 115/348 (33%), Gaps = 43/348 (12%) Query: 305 GIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G ++Y L+ G P + D+L L + +H+ + + M Sbjct: 112 GGQSYVPQLASLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEM--------- 162 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV------- 412 L + + Q SAT + + + D Sbjct: 163 --------LRMGFIDDVESILKKTPPQRQVALFSATMPSAIRRIAQTYLRDPQEITIKAA 214 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + + ++D L + E +++ TK+ E+L E L G Sbjct: 215 TTTATHIQQRYWMVSGLHKLDALTRIL--EVEPFEGMIIFARTKQATEELAEKLAARGFT 272 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 L+ D+ R +++ L+ G+ D+LV ++ GLD+ +S V D + Sbjct: 273 AAALNGDVPQALRERMVQRLKDGQLDILVATDVAARGLDVERISHVVNYDIPTD-----T 327 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 S + IGR R G AIL+ + +AI R+ Q + + +++ Sbjct: 328 ESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQPITQMQLPSTEAVNDSRISR 387 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + I + +G + +VE D+ + + + Sbjct: 388 FMERITE------AREQEGLEDYQRLVERYEQEFDIPAIEIAAALARM 429 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 104/319 (32%), Gaps = 13/319 (4%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K+ + L + L++ G + L G L +VV Sbjct: 80 KVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVL-PIYGGSSYAVQLAGLRRGAQVVVG 138 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + R L E L + + Q SAT Sbjct: 139 TPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMP 198 Query: 398 NYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + S + D T + + I + + D L+ + E ++V Sbjct: 199 PAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVL-EVEPFEAMIVFV 257 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK+ E++ E L G + D+ +R I LR G+ D+LV ++ GLD+ Sbjct: 258 RTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVE 317 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 +S V D + S + IGR R G A+++ + KAI + R+ Sbjct: 318 RISHVLNYDIPHD-----TESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372 Query: 573 EKQQKYNEEHGITPQGLNK 591 + + + Q + K Sbjct: 373 LTEAQLPTVEDVNTQRVAK 391 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 57/400 (14%), Positives = 130/400 (32%), Gaps = 21/400 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + I++ + +N K ++ LT + L++ +E+ + L Sbjct: 53 TLAFGIPIIQKIQEKIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLR--LC 110 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALD 373 G+ + L +V+ I + + + L E L Sbjct: 111 TVYGGQSIEKQINKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFI 170 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVR 426 + + + + SAT +E + + T L + I Sbjct: 171 DDVEEIMSKCKEDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEV 230 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + L I + LV TK + L L + LH D++ +R Sbjct: 231 KEHDKFELLRRIIDKEPGFYG--LVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRE 288 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + + + D+++ ++ G+D+ E++ V D ++ + + IGR R Sbjct: 289 LALSRFKSHKIDIMIATDVAARGIDINELTHVINYDIP-----QNPEAYVHRIGRTGRAG 343 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYN---EEHGITPQGLNKKVVDILALGQN 602 G AI + + K I + + K++K E +T + K+ ++ + Sbjct: 344 NKGTAITFVEPREFRRFKYIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENS 403 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + + + + S + + I +L Sbjct: 404 EDSEDLENYEFENLEIVDELIELADSKVIIDKLISQLFKE 443 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 119/330 (36%), Gaps = 25/330 (7%) Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +++ I I G + L E L + QTI Sbjct: 126 GADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPSTCQTI 185 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-----VATQVDDLLSEIRQRAAI 445 SAT + + + + + + + P +++ TQ +++ +I +A Sbjct: 186 MFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEKIQQSAYVCYETQKIEIIKDIF-KAGD 244 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 RV++ + +K+ + + L +HSD+D +R +++ + G+ DVLV ++ Sbjct: 245 LHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVATDI 304 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 + G+D+ ++++V D + + IGR AR G AI + + + Sbjct: 305 VARGIDIDDITMVINYDVPHD-----VEDYVHRIGRTARADRDGVAITFVNGDDIYYFQQ 359 Query: 565 IGETERRREKQQKYNEEHGITP------------QGLNKKVVDILALGQNIAKTKAKGRG 612 I + ++ + E G P + N++ D K+ + Sbjct: 360 IESFLEKTIEKNRLPEALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNYRRVK 419 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + P + P+ ++K +++ Sbjct: 420 NRQEQPAPTDEKEQHKPQTSEKKSEKVQDK 449 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 14/289 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ L ++V I I G R + L E L Sbjct: 105 YGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIED 164 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVA 429 QT+ SAT + + + + + + + + Sbjct: 165 IEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHE 224 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + D+L+ + A E +V TKR ++L E L G +H D+ +R+ ++ Sbjct: 225 KKKFDILTRLLDIQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVL 283 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R + G ++LV ++ GLD+ V+ V D + S + IGR R G Sbjct: 284 RKFKEGAIEILVATDVAARGLDISGVTHVYNFDIP-----QDPESYVHRIGRTGRAGKTG 338 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 A+ + I T +R+ ++ K + +L Sbjct: 339 VAMTFVTPREIGQLHHIERTTKRKMERMKPPTLDEALEGQQRIAIEKLL 387 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 95/296 (32%), Gaps = 19/296 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ L +V+ + G R L E L + Sbjct: 119 YGGQSIVHQIRALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDD 178 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPV 428 QT+ SAT N + + D +D + Sbjct: 179 IEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLE 238 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 ++D L + ++ TKR +DL E L G LH D+ +R + Sbjct: 239 RNKLDSLCRIVDSEDIQLG--IIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRV 296 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 +R R E ++LV ++ GLD+ +V+ V D + S + IGR R Sbjct: 297 MRKFRKNEIELLVATDVAARGLDVDDVTHVINYDVP-----QDPESYVHRIGRTGRAGKR 351 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG---LNKKVVDILALG 600 G AI + K I +++ ++ + + K+VD++ G Sbjct: 352 GLAITLVTPREYKLLKQIEREIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREG 407 >UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X9Q1_CAEBR Length = 653 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 31/288 (10%) Query: 303 CSGIENYSRFLS-----GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G ENY + P L D + + + ++ + + M Sbjct: 303 YGGRENYKDQIHKLRLGCHILIATPGRLLDVMEQGLIGLEGCRYLVLDEADRMLDMGFEP 362 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPT 416 + V R+P + T SAT + + + V Sbjct: 363 QIRQVVEFNRMPPKEERV-------------TAMFSATFPKEIQLLAQDFLKQNYVFLAV 409 Query: 417 GLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G + E V + L ++ + LV TKR A DL YL Sbjct: 410 GRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQN 469 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +V +H D+ ER + + R G +LV + GLD+P V V D + Sbjct: 470 YQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSD---- 525 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R N G A + + ++A+ + + ++ Sbjct: 526 -VDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELP 572 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 95/268 (35%), Gaps = 31/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + ++ + + M + + + + Sbjct: 554 TPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVE-------------QMD 600 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDL- 435 A QT+ SAT N + + + + G D I++ D Sbjct: 601 MPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRY 660 Query: 436 -LSEIRQRA------AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 L ++ Q LV TKR + L ++L +G +H D +ER Sbjct: 661 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 720 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 ++ + G ++V ++ GLD+P V+ V D ++ + IGR R + Sbjct: 721 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLP-----KAIDDYVHRIGRTGRAGKS 775 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQ 575 G A + + S+AK++ E + ++ Sbjct: 776 GLATAFFNDGNLSLAKSLVELMQESNQE 803 >UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=8 Tax=Magnoliophyta RepID=D1IXE3_VITVI Length = 797 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 123/370 (33%), Gaps = 13/370 (3%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P Y++ + + E + A E + +E++ + +++++ Sbjct: 358 AAFVLPMLTYISRLPPMSEENEA-EGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSI 416 Query: 300 LGYCSGIENYSRFLSGRGP-GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 +G S E R G P L D L ++ ++V + + M + Sbjct: 417 VGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQ 476 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 V + + + + + T SAT + + + VV G Sbjct: 477 VVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGT 536 Query: 419 ----LDPIIEVRPVATQVDDLLSEIRQRAAINERV-LVTTLTKRMAEDLTEYLEEHGERV 473 D I + + + + + + + ++ +V TK+ A++L + L++ G RV Sbjct: 537 AGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRV 596 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH +R + R ++VLV ++ G+D+P+V+ V D + Sbjct: 597 TTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP-----GNIE 651 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 IGR R G A + + + + + + Sbjct: 652 MYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGA 711 Query: 593 VVDILALGQN 602 + D + Sbjct: 712 IPDRPPRRND 721 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 108/321 (33%), Gaps = 22/321 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G + D L A +VV + R L E L Sbjct: 166 YGGVGYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPD 225 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVAT 430 + QT+ SAT + + + V T P + Sbjct: 226 VENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQA 285 Query: 431 QVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D + I + N E+V++ TKR + L++ L++ G + R +H D+ V R + Sbjct: 286 HPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKA 345 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 ++ R G+ +LV ++ G+D+ VS V + E++ + IGR R Sbjct: 346 LKKFRHGDATILVATDVAARGIDVTGVSHVINHECP-----EDEKTYVHRIGRTGRAGAK 400 Query: 548 GKAILYGDKITPSMAKAIGE--TERRREKQQKYNEEHGI-----TPQGLNKKVVDILALG 600 G A+ D + K I + E + Y+ + P+ +++D+ Sbjct: 401 GVAVTLVDWADVTRWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDLE-KA 459 Query: 601 QNIAKTKAKGRGKSRPIVEPD 621 + K + G E Sbjct: 460 ASEKKRRQHRHGHDGSHHEKA 480 >UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D4DD Length = 684 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 101/344 (29%), Gaps = 48/344 (13%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ +E R + G + P L D L D + + + Sbjct: 335 QIYDEARKFSYRSRLRPCVVYGGSYLQDQFRELEKGCHLLVATPGRLADMLDRDKIGLEN 394 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + M + + + QT+ SAT + Sbjct: 395 CKFLVLDEADRMLDMGFEPQIRRIVEKDMPRTGE--------------RQTLMFSATFPD 440 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 ++D LL+ R + LV T++ Sbjct: 441 VIQADKRSFLLD------------------------LLNATRYKNGTESLTLVFVETRKG 476 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ L EYL G V +H + ER + +R R GE +LV + GLD+ V+ V Sbjct: 477 ADCLEEYLHYQGYPVSCIHGERSQREREDALRRFRSGETPILVATAVAARGLDISHVTHV 536 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK--- 574 D + + IGR R N G A + ++ ++ + + E + Sbjct: 537 INFDLPSD-----IEEYVHRIGRTGRMGNLGVATSFFNEKNRNIVRDLVELLTETNQDLP 591 Query: 575 -QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + PQ + G + + SR Sbjct: 592 KWLEAFASDMNAPQTSRRGGGSKTRFGGGFGARDYRQQSNSRSG 635 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 55/388 (14%), Positives = 130/388 (33%), Gaps = 34/388 (8%) Query: 21 IRRLEEGLE-DGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPNKTLAAQLYGEMK 78 +++L +G+ + L G+TGS TF A + + ++ AA + +++ Sbjct: 16 LQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLE 75 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR--DV 136 + YF + + SS + +R A Sbjct: 76 SITQGLDIFYFPDSFKKAGFFNEINSSHSM-------------LRTEALMKFSGNAVHKK 122 Query: 137 VVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V+V A++ + Y M+ L VG ++ +L +L + D ++ G + + Sbjct: 123 VLVTYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYAL 182 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+ ++ R+ELF E+++ + LFDP + + + T+ + Sbjct: 183 RGGILDIYSFGNEK-PYRIELFGEDIDSIRLFDPESQLSERKLNQVTLIAN----MDTQG 237 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + + L V +++ +++ L + D + ++ + LS Sbjct: 238 LKHEKASLLGFLPENTIVWMKDPGYVQDVILQLEERLDA-FLQTGQQVKVGDDDTIALSE 296 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + + D L ++ + D R + + + + + Sbjct: 297 ADFVKAHAMMQDLLRRHCIVF----------GSRQWWEDTNRAFIPLNFETQEQPVFNRQ 346 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEK 403 + + Y + Sbjct: 347 FEMLIKDLDAHNKNKYTLFIFAENARQL 374 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 96/262 (36%), Gaps = 23/262 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQR 442 + T+ ++ATP L+ S D V T + IE D + I Sbjct: 712 KINVDTLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQPIETEVHVFDHDLIRDAIYYE 771 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +V + +++ ++ + H ++ + E+I D ++DVL Sbjct: 772 TERGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQMEGHQLEEVILDFIDRKYDVL 831 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V N++ G+D+P + + I +A G L Q GR R+ + + P Sbjct: 832 VCTNIVESGVDIPNANTIIINNAHHFGLS----DLHQLRGRVGRSNK---KAFCYLLAPP 884 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 ++ + R+R + + + E G G + D+ G N+ + G Sbjct: 885 IS-TLPGDSRKRLQTLEQHSELG---SGFQIAMRDLDIRGAGNLLGGEQSGF-------- 932 Query: 620 PDNVPMDMSPKALQQKIHELEG 641 + DM K L + I EL+ Sbjct: 933 MAEIGFDMYQKILDEAIRELKQ 954 Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 39/348 (11%), Positives = 86/348 (24%), Gaps = 42/348 (12%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + +G +L +LP + ++ + + I + A +T + Sbjct: 233 MDTQGLKHEKASLLGFLPENTIVWMKDPGYVQDVILQLEERLDAFLQTGQQV-----KVG 287 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D+ + E + + + + + S D L E Q Sbjct: 288 DDDTIALSEADFVKAHAMMQDLLRRHCIVFGSRQWWEDTNRAFIPLNFETQEQPVFNRQF 347 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L+ ++ + + R E L ++ D Sbjct: 348 EMLIKDLDAHNKNKYTLFIFAENARQLERLRSIF-------------------EDLKADF 388 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + + G + LV D KAI Sbjct: 389 TFFPIP-----SPVSHGFIDHSLKLVCYTDHQIF-------QRYHKYKVKQAYNKNKAI- 435 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 T +A Y+ I G ++ + I+ ++ Sbjct: 436 --TMKTLRELQAGDFVTHIDHGVGVYSGLQKIEVGGKMQEAIRIIYKNNDLLYVNINSLH 493 Query: 613 KSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 K + V + A + + + + A++L AA+ Sbjct: 494 KISKYSGKEGVEPRVNKLGSDAWDKLKEKAKTQVKDIAKDLIQLYAAR 541 >UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax=Brugia malayi RepID=A8QDF3_BRUMA Length = 587 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 100/294 (34%), Gaps = 33/294 (11%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D+L A L + +++ + + M + + Sbjct: 315 PGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIR-----------------RIVS 357 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVD 433 QT+ SAT + + D V G L ++ V + + Sbjct: 358 MIRPDRQTLMFSATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEE 417 Query: 434 DLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LL + + ++ + L+ KR A+ LT + + G LH D ER ++ D Sbjct: 418 KLLEFLNRTSSEQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDF 477 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + GE +LV ++ GLD+ ++ V D ++ I IGR AR+ G + Sbjct: 478 KNGECSILVATDVAARGLDVNDIKYVINFDCP-----KNIEDYIHRIGRTARHDKTGTSY 532 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + + + ++ + + + K L +++ Sbjct: 533 TLCTRSDAPIVNELVSVLKEAKQTVPSD-LLDLVSRHPTKSSRKFKILISGMSE 585 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/376 (19%), Positives = 128/376 (34%), Gaps = 28/376 (7%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K + L + +++ + + + + L+ G G + L +VV Sbjct: 138 KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYG-GTDFRSQISTLRRGVDVVVG 196 Query: 339 ESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + G L E L + E Q + SAT Sbjct: 197 TPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMP 256 Query: 398 NYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAI--NERVLVT 452 S + D D +I R + + L +++ E V++ Sbjct: 257 PEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIF 316 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK + + E LE G +V L+ D+ +R + LR G DVLV ++ GLD+ Sbjct: 317 ARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARGLDV 376 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 + LV D + + + IGR R G+A+L+ +TP + I ER Sbjct: 377 ERIGLVINYDMPFD-----SEAYVHRIGRTGRAGRTGEAVLF---MTPRERRFIRNLERA 428 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + + E G T A+ Q K ++ V ++ + + Sbjct: 429 TGQPIEMMEVPGNT------------AINQGRLDRLRKRLSEAANGVAGNSEEGALIQEL 476 Query: 632 LQQKIHELEGLMMQHA 647 +Q+ EL+ Q A Sbjct: 477 MQRVATELQLTPEQIA 492 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 109/328 (33%), Gaps = 19/328 (5%) Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 E +N+LG GI+ + G+ L ++V + + R Sbjct: 88 EELNKLGQVKGIKALPIY-----GGQEITRQITALKKRPQIIVATPGRYMDHMRRKTIRP 142 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + L E L + QT+ SAT + + V Sbjct: 143 EFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFSATMPPKLKTIADRFMNKPVS 202 Query: 414 RPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +E + + D L + E ++ TKR ++LTE L Sbjct: 203 IAVKAKQLTVENIEQRYIALSEKEKFDTLCNLLD-METPELAIIFGRTKRRVDELTESLS 261 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G V LH D+ R ++IR + G DV+V ++ GLD+ +VS V D Sbjct: 262 IRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARGLDVNDVSHVINFDLP--- 318 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + S + IGR R G + + + I E+ R++ KQ Sbjct: 319 --QDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEESTRQKMKQVDAPTLADAMR 376 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKS 614 + V ++ N A + G K Sbjct: 377 GRHKQAVNELKKAVNNAASKQLTGEAKQ 404 >UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791A51 Length = 641 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 90/270 (33%), Gaps = 31/270 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + M + Sbjct: 356 TPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCI-------------FSDNT 402 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQ 431 + T+ SAT + + + D + G + +EV + + Sbjct: 403 MVSSAERSTLMFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKK 462 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L + + +V KR A+ + +L E +H D + ER + +RD Sbjct: 463 NE--LVALLNETNDCQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRD 520 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + + VLV + GLD+ V+ V D ++ + IGR R +G+A Sbjct: 521 FKTKKMKVLVATAVAARGLDIMGVTTVVNFDLP-----KTIEEYVHRIGRTGRLGNSGRA 575 Query: 551 ILYGDKITPS-MAKAIGETERRREKQQKYN 579 + + D S MA + T +R ++ Sbjct: 576 VSFYDPDNDSAMAPYLVNTLKRADQNIPEF 605 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 115/341 (33%), Gaps = 22/341 (6%) Query: 309 YSRFLS--GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYG 365 Y G+ L +VV I + G R + L E Sbjct: 101 YIPGFHVLPIYGGQSYGAQLSALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEAD 160 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDP 421 L + + + QT SAT + + + D + TG D Sbjct: 161 EMLRMGFIDDVETILQKTPESRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADN 220 Query: 422 IIEVRPVAT--QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 I + + + Q D L+ I + + +++ TK E+L L+ G ++ D Sbjct: 221 IRQRYWLVSGMQKLDALTRILEAENFDG-MIIFARTKLGTEELASKLQARGFSAAAINGD 279 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 I +R I+ L+ G+ D+LV ++ GLD+ +S V D + S I Sbjct: 280 IQQQQRERTIQQLKDGKIDILVATDVAARGLDVERISHVINYDVPHD-----PESYTHRI 334 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR R G+AIL+ ++ KAI R+ + + +++ I Sbjct: 335 GRTGRAGRSGEAILFIAPRERNLLKAIERATRQPISVLELPSVEAVNDVRISRFKEQIAE 394 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 A G ++E ++ + + +L Sbjct: 395 TIA------AGGLEVFHSLIEDYEREHNVPAVEIAAALAKL 429 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 64/395 (16%), Positives = 122/395 (30%), Gaps = 25/395 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + K L + +++ E+ S + G + D L +V Sbjct: 83 DKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRD-LKRGADIV 141 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I R D R L E L + F Q + SAT Sbjct: 142 VATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSAT 201 Query: 396 PGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 ++ S +V+ + I +VD + ++ Sbjct: 202 MPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTSG-- 259 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+M ++LT L + G LH D+ R ++ + G VL+ ++ Sbjct: 260 TMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAAR 319 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ + +V D + + IGR R G AI + K I Sbjct: 320 GIDVDSMDVVINYDIP-----QELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIER 374 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM-- 625 + + LN +VD LA +G+ + N Sbjct: 375 LSNSTIVETPLPTKEQ-----LNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLRNENFTQ 429 Query: 626 -DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 ++ + + I E ++ ++ + + +I Sbjct: 430 EEIIVAFINKMISESNLEAIKVSKQKDVKNKGEIS 464 >UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA Length = 636 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 97/289 (33%), Gaps = 32/289 (11%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D + + + + + + + M + + R+P + Sbjct: 302 CHLIVATPGRLEDMIGRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEESRMPVTGER 361 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----------IE 424 QT+ SAT E + + + G + +E Sbjct: 362 -------------QTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVE 408 Query: 425 VRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + DLLS I ++ ++ L+ TK+ A+ L E+L H V +H D Sbjct: 409 ENIKRSHLLDLLSNITKQNDGDDENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRT 468 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E +R R G +LV + GLD+P V V D E + IGR Sbjct: 469 QAEREEALRLFRCGRCPILVATAVAARGLDIPNVKQVINFDLPAE-----VEEYVHRIGR 523 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 R N G A + ++ ++A + ++ E + Sbjct: 524 TGRMGNLGTATSFFNEKNRNVANGLVRLLAETGQEIPGFLEEMTNSRSF 572 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 98/294 (33%), Gaps = 14/294 (4%) Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +VV + D A L E L + E Sbjct: 146 QMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQA 205 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT------QVDDLLS 437 + Q + SAT + + + ++ + D+ +S Sbjct: 206 PESAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMS 265 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V T++ E L ++L G + LH DI R + ++ G Sbjct: 266 RLLETEETDAS-IVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVI 324 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D+LV +++ GLD+P ++ V D + S I IGR R GKAIL Sbjct: 325 DILVATDVVARGLDVPRITHVFNYDIPFD-----VESYIHRIGRTGRAGRKGKAILLVRT 379 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 M + I + + ++ + + + + K ++ ++ A G Sbjct: 380 NQIRMLRTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAG 433 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 104/304 (34%), Gaps = 15/304 (4%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ ++E Y G + +R L G G+ L + ++V + I Sbjct: 80 TRELAIQVSEELYKIGQDKRARVLPIYG-GQDIGRQIRALKKNPHIIVGTPGRLLDHINR 138 Query: 350 MYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + ++ E L QT+ SAT + + Sbjct: 139 RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFM 198 Query: 409 VDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + + + + D L+ + + E +V TKR ++L Sbjct: 199 TNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSP-ELAIVFGRTKRRVDEL 257 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 TE L G +H D+ +RM +R + G +VLV ++ GLD+ V+ V D Sbjct: 258 TEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFD 317 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S + IGR R G A+ + M +AI +T +R+ + K Sbjct: 318 VP-----QDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTL 372 Query: 582 HGIT 585 Sbjct: 373 DEAI 376 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 107/328 (32%), Gaps = 48/328 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P +L + S V + + M + V Sbjct: 254 TPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREV-----------------M 296 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVD 433 + QT+ SAT + + + V PT + I+E + ++D Sbjct: 297 QNLPQKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKID 356 Query: 434 DLLSEIRQRAAINER-------VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 LL+ + + A+ ER +V K +++ E L G R LH ER Sbjct: 357 GLLALLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAERE 416 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 +RD R G ++LV ++ GLD+ V+ V LD ++ + + IGR R Sbjct: 417 AALRDFRNGATNILVATDVASRGLDVTGVAHVINLDLP-----KAMENYVHRIGRTGRAG 471 Query: 546 VNGKAILYGD----KITPSMAKAIGETERRR-------EKQQKYNEEHGITPQGLNKKVV 594 G+A + + + KAI + + +K E + + Sbjct: 472 STGQATSFYTDRDVFLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALS 531 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDN 622 ++ +G + K R P Sbjct: 532 NLSLMGPTSLNIEEKYRFMMSPSSIKTE 559 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 117/373 (31%), Gaps = 23/373 (6%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + P ++ +A E K R + LL + Sbjct: 100 VSSQTGSGKTAAF-MLPAIQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALL----VLT 154 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ + E G + G P P L ++V + I Sbjct: 155 PTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHID 214 Query: 349 -GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 G + E L + QT+ SAT + + Sbjct: 215 AGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQ 274 Query: 408 VVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + D ++ + + + LL + + A + ++ +V T TKR A+ Sbjct: 275 LRDPQRIEIAAARADQSHIEQRLHFTDDMSHKERLLDHLLRDATL-KQAIVFTATKRDAD 333 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L E L + G LH D+ R + LR G VLV ++ G+D+P+++ V Sbjct: 334 SLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVN 393 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + + IGR R G AI + K I ER ++ + Sbjct: 394 FDLP-----KQAEDYVHRIGRTGRAGRSGTAINLVNHNDMFQWKRI---ERFTNQRIDAS 445 Query: 580 EEHGITPQGLNKK 592 G+ P+ K Sbjct: 446 VIEGLEPRRSPKP 458 >UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EA02_PARTE Length = 957 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/382 (17%), Positives = 124/382 (32%), Gaps = 44/382 (11%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRL 368 + + G + + ++V I I M ++ L E L Sbjct: 177 LKIVCIYGGNPNKKQQVELIQKGIHVIVATPGRLIELIDEGMVNLNKITMLILDEADRML 236 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + QTI +SAT N + S D ++ G PI + Sbjct: 237 DMGFEPQVRDIVSTIREDRQTILLSATWPNEVQQLSKEFCYDPILVKIGKGAPITQKIIC 296 Query: 429 ATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 Q + L L + ++VL+ TK+ EDL++ L + G LH D +R Sbjct: 297 TGQKEKLHVLMNVLDDLIYTDKVLIFAETKKRCEDLSQSLTKQGYFCISLHGDKSQDQRD 356 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 I++ + ++ ++ GLD+ ++++V D F +S I IGR R Sbjct: 357 AIMKQFKDSNTRLICATDIASRGLDVKDITVVVNYD-----FPKSFDDYIHRIGRTGRAG 411 Query: 546 VNGKAILYGDK----------------------------ITPSMAKAIGETERRREKQQK 577 +G++ K E ++R+ +Q Sbjct: 412 AHGRSFSLLSYEKDEGILADQVITYLNSCNQEVNQELLEFKDKALKVKQERQQRKLQQYI 471 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 N P + + +N + + G+ + I + N + + Sbjct: 472 DNSNQTGIPNSIYPP-NNFCQTSENKQENSNQWEGRQQYINQGSNQKKPYHKHSRSEYNE 530 Query: 638 ELEGL------MMQHAQNLEFE 653 E +G Q N++F+ Sbjct: 531 EYKGEIQQYQQHHQRNYNMDFK 552 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 116/336 (34%), Gaps = 13/336 (3%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ ++ L + L++ E+ + + R + G G+ L + +V Sbjct: 96 QDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYG-GDSIERQIRSLKSGVHIV 154 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + + + L E L E QTI SAT Sbjct: 155 IGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFSAT 214 Query: 396 PGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVL 450 ++ + D V+ L + IE + + + + + + +L Sbjct: 215 MSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKLLL 274 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR +++ E L+ G + LH D+ +R ++ R G ++LV ++ G+ Sbjct: 275 VFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAARGI 334 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ +V V D + E + IGR R +G+A + + + I Sbjct: 335 DVDDVDAVINFDIPLD-----EEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYT 389 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + ++ I + + + Q Sbjct: 390 KVKVEKGVIPSFEDIVGVRKARFIEQLQQTIQESKD 425 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 101/313 (32%), Gaps = 31/313 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + S++ I + M L + Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEM-----------------LNMGFIEQVEAII 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLS 437 + T+ SAT + S + + GL IE + + ++ S Sbjct: 170 KHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFS 229 Query: 438 EIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 ++ + ++ TK LT+ L++ G +H + +R +++ + + G Sbjct: 230 LLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 289 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 E+ LV ++ G+D+ +SLV D E + S + GR R GKAI + Sbjct: 290 EYRYLVATDVAARGIDIENISLVINYDLPLE-----KESYVHRTGRTGRAGNKGKAISFV 344 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGIT---PQGLNKKVVDILALGQNIAKTKAKGR 611 I E ++ + + + P+ L K + + Sbjct: 345 TAFEKRFLADIEEYIGFEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIM 404 Query: 612 GKSRPIVEPDNVP 624 + + Sbjct: 405 KLYFNGGKKKKIR 417 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/390 (16%), Positives = 125/390 (32%), Gaps = 41/390 (10%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI------ADLQRPTMVLAPNK 67 + + + + L G + G+ GS A V L +++ P+ Sbjct: 7 LLRKHKQYKEIIRQLSSGKG-CCVNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDA 65 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + ++K F P P+ + ++ E I RL Sbjct: 66 EDAREDWEDLKTFS--------------NLPVTLFPAVEDIFNNESDAYEDIMAQRLFIL 111 Query: 128 KAMLERRDV------VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + + V+V+S+ A+ ++ G ++ L Sbjct: 112 NQLCRKNKDASHQTDVIVSSIQALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHH 171 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y Q +G + +RG +IDIFP ++ I R+E F +E+E + F+ T Q V+ I Sbjct: 172 YQETSQVENQGEYAIRGGIIDIFPFATE-IPCRIEYFGDEIESVRSFNVETQQSVAQINS 230 Query: 241 FTI---------YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 I +P + + E L ++ + ++LE + Sbjct: 231 CQILFVHKMYGLHPMQGEIQKTSLLDYLSGETTIILKEPTRIESKLRQMLEITDYKEALF 290 Query: 292 FDLEMMNELG-YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + E+ +L + + F + D P +V E Sbjct: 291 TEEEIFKQLKTFTKITLSKLPFTTENNAYAFQVKAIDEFPRQIQDIVAEFKKITEAHDKT 350 Query: 351 --YRGDRARKETLVEYGFRLPSALDNRPLK 378 + + A ++ E LP L L+ Sbjct: 351 IVFCINPAEEQRFREITSGLPEGLQRFELR 380 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 117/404 (28%), Gaps = 38/404 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q E M + Y Sbjct: 572 PMDRLICGDVGYGKTELAIRAAFKAAMYGKQAAVLVPTTILAQQHYTTFSERMAD--YPV 629 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SR S + + A + ++ +H + + + + Sbjct: 630 EIEVLSRLKSHKEQKDILEKTL----AGKIDILIGTHRLLQKDVVFKDLGLVIIDEEQRF 685 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPII 423 G + + ++ATP L S + D T L I Sbjct: 686 GVAHKERFKKMRQVVDM--------LTLTATPIPRTLHMSLMGIKDISSLNTPPLGRQSI 737 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI- 480 + + + I N +V E + L R L H + Sbjct: 738 RTQIMRFDPQRIRQAILLEMNRNGQVYFVHNRVYNIERIAHTLSTIVPEARILVVHGQMM 797 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D + ++D + D+LV ++ GLD+P V+ + I AD G L Q G Sbjct: 798 DEKLLAQRMKDFVDHKADILVSTTIIESGLDIPNVNTIFINCADSFGLA----DLHQLRG 853 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R + Y + P + + + +R K + E G G + D+ G Sbjct: 854 RVGRYKH---HAYAYIVLP-IDRPVTPEAEKRVKAIEEFAELG---AGFKIAMRDLEIRG 906 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 NI + G V +M + L+ + + Sbjct: 907 AGNILGVEQHG--------HIAAVGYEMYCRLLEIAVCKARNEP 942 >UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces pombe RepID=PRP28_SCHPO Length = 662 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 93/282 (32%), Gaps = 15/282 (5%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG--FRLPSALDNRPLK 378 P L D L ++ ++V + + M + S D L Sbjct: 382 TPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILA 441 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQ 431 + QTI SAT + +++ V+ G ++ +E+ ++ Sbjct: 442 TANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSK 501 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + EI + + +++ KR E + + L G LH +R I Sbjct: 502 KWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQ 561 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 LR D+LV ++ G+D+P VSLV + +S IGR R +G A Sbjct: 562 LRNKTADILVATDIAGRGIDIPNVSLVLNYNM-----AKSIEDYTHRIGRTGRAGKSGTA 616 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 I + + + R K +E + Sbjct: 617 ITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAAFVRHA 658 >UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryota RepID=Q9SEV8_GUITH Length = 385 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/442 (15%), Positives = 144/442 (32%), Gaps = 72/442 (16%) Query: 154 YLKMMLHLTVGMIIDQRAILRRLAE----LQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 + ++ + R L + + R QRG I P + + Sbjct: 1 MNHNIKVFKRAETFEEMELKRELLKGIYGYGFERPSFIQQRG----------ILPIINKE 50 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + + F I + +I + ELA Sbjct: 51 DVV----------------AQSQSGTGKTATFVIGTLQNLSNIENKIKNLVLVPTRELAT 94 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + + + ++ + G I N ++ + P + D L Sbjct: 95 QVEQVFKS---------IGFFMKIKTQLLTGGDRIQITNKEQYKKPQIVIGTPGKVLDSL 145 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + ++ + + M+ + LK ++ L + Sbjct: 146 SKKTYYIENLEYLVVDEADEMFSR-----------------GFKIQVLKIIKYLPLEAKI 188 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVATQVDDLLSEIRQ 441 SAT LE + + V G+ I + ++D ++ EI Sbjct: 189 ALFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVI-EIYS 247 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + I + ++ T+R E L ++++G V YLH ++ ++R +++D R G F +L+ Sbjct: 248 KIKITQS-IIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRILI 306 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 +L+ G+D+ +V LV D K + I IGR+ R G AI + + S Sbjct: 307 STDLVSRGIDIQQVCLVINYDLPKL-----KEVYIHRIGRSGRFGRKGVAINFLSRSDVS 361 Query: 561 MAKAIGETERRREKQQKYNEEH 582 + ++I ++ + Sbjct: 362 ILRSIEGYYNTNIEEMPNDISE 383 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 23/370 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G+ L + +V+ + + R + + L E L Sbjct: 108 YGGQEIERQLKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFRED 167 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQV 432 + + QTI SAT L + L P IE Q Sbjct: 168 MEFILKDTPIDRQTIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQE 227 Query: 433 DDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + + + LV TK + + E L+ G LH D++ +R +++ Sbjct: 228 NAKGEALARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMN 287 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 R G ++LV ++ G+D+ V V D ++G + IGR R G Sbjct: 288 GFRNGNIEILVATDVAGRGIDVNNVEAVFNYDLPRDG-----EDYVHRIGRTGRAGKKGI 342 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN------KKVVDILALGQNI 603 A + K I + + K + ++ + +VD +G+ + Sbjct: 343 AFSFIVGKQIYNLKKIERINGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYV 402 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + + K G ++ M L+ + +Q N ++EE + + Sbjct: 403 NQVE-KLMGDDYTALDIAAALFKM--TILRDSV--TFDDSVQFESNFKYEERNSFKKKPG 457 Query: 664 QLRELFIAAS 673 + R+ S Sbjct: 458 KYRDRNFGRS 467 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 111/347 (31%), Gaps = 54/347 (15%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + +V + + M L K Sbjct: 128 TPGRLMDHMNRGTISLSPLKYVVLDEADEM-----------------LDMGFLPDIQKIL 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 QT SAT + E + + + P IE + Sbjct: 171 SQCPRERQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIE 230 Query: 438 EIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + L+ TKR A++L L G LH D+ ER ++ R G Sbjct: 231 TLCRIIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQG 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 +LV +L GLD+ V+ V D S I +GR R G AI Sbjct: 291 NTKILVATDLAARGLDIELVTHVFNFDIP-----EDLDSYIHRVGRTGRAGRSGIAITLV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + I +R ++ + + + Q++ + + Sbjct: 346 EPTQIRLLRMIERHTGKRIERALLPT------------LAEAVEKRQDLLLERVR----- 388 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL------EFEEA 655 + EP +V + ++ K +QQ E M+ A L +FE A Sbjct: 389 QASAEPGDVCLSLAEKLMQQGDPE---KMLAAALKLLIDEEPDFEMA 432 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 30/266 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + L + ++ + + M + Sbjct: 134 TPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVT---------------- 177 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 A Q+++ SAT + + D V + E + Sbjct: 178 -LLPKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQA 236 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL I + +I+ RVLV T TK A+ + LE+ G +H + +R + R Sbjct: 237 LLGTILRDESID-RVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRA 295 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G VLV ++ G+D+ V+ V D + + IGR AR +G AI + Sbjct: 296 GTCRVLVATDIAARGIDVEGVTHVVNFDLP-----NVPEAYVHRIGRTARAGADGLAISF 350 Query: 554 GDKITPSMAKAIGETERRREKQQKYN 579 ++ + + I R++ + Sbjct: 351 CNEEERAYLRDIERLTRQKVPEMAIP 376 >UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/Metazoa group RepID=DBP2_ENCCU Length = 495 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 97/312 (31%), Gaps = 27/312 (8%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNR 375 G L +V+ I + R L E L + + Sbjct: 195 YGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQ 254 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K QT+ SAT + + + + G + I+EV Sbjct: 255 LRKIIPKTNANRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCS 314 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + D L+ + ++V+V KR +DL L G LH D R + Sbjct: 315 GREKEDKLIGVLDNFK--GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDK 372 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ D R G +L+ + GLD+ +V LV D F S + IGR AR Sbjct: 373 VLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFD-----FPGSCEDYVHRIGRTARGNT 427 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + I + A A RE Q + + D++ + + ++ Sbjct: 428 KEGISHTFFTVGDKANARELIRMLREANQTVPSD-----------LEDMVRVSNDRYGSR 476 Query: 608 AKGRGKSRPIVE 619 + G Sbjct: 477 STRHGYDYRGRA 488 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 114/391 (29%), Gaps = 42/391 (10%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR------ 316 I + L + + + + L ++ Q +E + + + Y Sbjct: 59 ILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLR 118 Query: 317 ----GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D+L L + + + + M+ + Sbjct: 119 RGVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILR-------- 170 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPV 428 QT+ SAT + + + + G P+ V PV Sbjct: 171 ---------LAPAQRQTMLFSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPV 221 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 A + L R VL+ T TK A+ L++ L G R L ++ R Sbjct: 222 AEHLKTALLIELLRHTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAA 281 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + R G + +LV ++ G+D+ +S V D ++ + IGR R Sbjct: 282 LDGFRSGRYQILVATDIAARGIDVAHISHVINYDMP-----QTAEAYTHRIGRTGRAART 336 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-----GQN 602 G A + M +AI K++ + D Sbjct: 337 GDAFTLVTRSDTGMVRAIERLIGEPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHY 396 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 ++ + ++ + D +P+ Sbjct: 397 EPHSQDERDNRAPRRHDAQERRSDTAPRRRD 427 >UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa RepID=Q9GV13_HYDMA Length = 797 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 70/395 (17%), Positives = 124/395 (31%), Gaps = 36/395 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRT 290 F I + R + ++ E++ LA E ++ +E R + Sbjct: 398 QTGSGKTAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQN 457 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++ G P L D+L + + + ++ + + M Sbjct: 458 TSIKPVVIYGGVQVAYHLRQVQQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRM 517 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + F +P D T+ SAT + + + Sbjct: 518 LDMGFLPEIKAIINDFDMPPKEDR-------------HTLMFSATFPTEIQNLAAEFLNN 564 Query: 411 QVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V G + + + D L EI N R LV TKR+A+ L Sbjct: 565 YVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIEILDTEGTN-RNLVFVQTKRLADFLAS 623 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL ++G +H D +R E + + + G VL+ + GLD+ +V V D Sbjct: 624 YLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDLP 683 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-----ITPSMAKAIGETERRREKQQKY 578 E I IGR R GKAI + + + ++ K + + E+ + Sbjct: 684 DE-----IEEYIHRIGRTGRIGNKGKAISFFTRGKDEGLARALVKTLADAEQEVPSWLEE 738 Query: 579 NEE----HGITPQGLNKKVVDILALGQNIAKTKAK 609 E G P+G D + Sbjct: 739 AAESALGTGYGPKGGRFASKDSRFNNAELNGGSYN 773 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 83/272 (30%), Gaps = 29/272 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + D V + + M + Sbjct: 128 TPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILS---------------L 172 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVDD 434 + QTI SAT + + + D V I+ + + Sbjct: 173 MPSERSYQTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKAN 232 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + E ++ TK+M ++L L +H + LH D+ R ++ R Sbjct: 233 ALRVLLNHY-DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRS 291 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G +L+ ++ G+D+ +V LV D + I IGR R G AI Sbjct: 292 GSMPILIATDVAARGIDVDDVDLVINFDIP-----QDNEYYIHRIGRTGRAGKKGLAITL 346 Query: 554 GD-KITPSMAKAIGETERRREKQQKYNEEHGI 584 S K I + K + Sbjct: 347 ISGGRQRSELKNIMRYTKTNIKHHALPTSAQM 378 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 56/326 (17%), Positives = 107/326 (32%), Gaps = 43/326 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + S++ + M+ + + R Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRP------------ 430 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 QT+ SAT + + ++D + G + I+E+ Sbjct: 431 -----DRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKW 485 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + L+ + VL+ K AE+L L++ G + LH D+D ER ++I D + Sbjct: 486 NWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFK 545 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 + VLV ++ GLD+P + V D R + IGR R G A Sbjct: 546 KKDIPVLVATDVAARGLDIPSIKTVINYDV-----ARDIDTHTHRIGRTGRAGEKGVAYT 600 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + A + Q ++K+++D+ K++ KG Sbjct: 601 LLTPKDSNFAGDLVRNLE-------------GANQHVSKELLDLAMQNAWFRKSRFKGGK 647 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHE 638 + + + P + + Sbjct: 648 GKKLNIGGGGLGYRERPGLGSENMDR 673 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 94/296 (31%), Gaps = 17/296 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G+ + L +VV + + + D + L E L Sbjct: 107 YGGQSIERQINTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLED 166 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------A 429 Q SAT + + + + + + Sbjct: 167 IRYILSHVGKERQITMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGE 226 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ D LS++ + + LV TK+ ++L L+ G V LH D+ R ++ Sbjct: 227 SRKFDALSKLIEYYNP-QLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVM 285 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R VLV ++ G+D+ ++ V D + E + IGR R G Sbjct: 286 NSFRNKSIKVLVATDVAARGIDVDDIEAVFNYDIP-----QDEEYYVHRIGRTGRAGKTG 340 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK---KVVDILALGQ 601 KA + + + I + + K E + + + ++ DIL G Sbjct: 341 KAFSFAYGRSLHRLREIQRYTKIKIKSLNVPSEKDVNTKRMESFLGEINDILEQGN 396 >UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=B7S475_PHATR Length = 575 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 91/277 (32%), Gaps = 30/277 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + ++ + + M + + Sbjct: 269 TPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSI----------------IL 312 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---------LLDPIIEVRPVATQ 431 QT+ SAT + + + + G + I + + + Sbjct: 313 NIPPENRQTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEK 372 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +D L +R + +++V K DL L E G V LH D ER +++ Sbjct: 373 LDKLEQILRDLM--HGKIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQA 430 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G+ VL+ ++ GLD+ +V +V D + + IGR R GKA Sbjct: 431 FKGGQLRVLIATDVAARGLDVKDVGVVVNYDMPS--GVNGVEDYVHRIGRTGRAGNKGKA 488 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + + A + + + +++ + P+ Sbjct: 489 YTFFTQGDRKNATQLVQVLTKAQQEIPPELQAMARPR 525 >UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa RepID=B3L5Y4_PLAKH Length = 669 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 95/269 (35%), Gaps = 30/269 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + + F Sbjct: 359 TPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHF-------------- 404 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQVDDL 435 + QT+ SAT E + +V+ ++ G LD I EV V ++ L Sbjct: 405 ---SRQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEL-KL 460 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + VL+ K+ +D+ EYL G +H ++ ER E I R G Sbjct: 461 SYLLEVLQKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREG 520 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + D+LVG ++ +GLD P + V D K+ + + IGR R G A + Sbjct: 521 KKDILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGRCGKTGIATTFI 575 Query: 555 DK-ITPSMAKAIGETERRREKQQKYNEEH 582 +K ++ + +++ E Sbjct: 576 NKNQEEAILLDLKALLIEAKQKIPPFLEM 604 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 86/663 (12%), Positives = 211/663 (31%), Gaps = 105/663 (15%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 ++ + I L + +E ++G + K+ I ++ + ++++PN+ Sbjct: 4 NSLISYISNSQIITELVKRIEKN-KELNIIGSSRYAKSIIINSLAKKENKNIILVSPNEE 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +A + YG N Y P S + ++ E +LS Sbjct: 63 IAYKWYGYFNSIGNRN--------------ILYYPPSKNLPYGSINKSKETEYSQLSVIS 108 Query: 129 AMLE---RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++ +++ + ++ L +++ + ++ L G+ I+ + + +L L Y + Sbjct: 109 KLINNDKEEKNIIITTERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKE 168 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + Q G++ RGE+IDI+P ++ + +R+E FD ++++ +DP+T + + +I + I Sbjct: 169 NLTSQEGSWSRRGEIIDIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIV 227 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + RE++ + E+ + Sbjct: 228 QVGYNSLIREKLELLS------------------------------DEGVFNSEEITTKN 257 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG-------DRAR 357 ++ Y + P L +Y+ D ++V+DE Y + Sbjct: 258 NLDRYLGIIEEY-----PSNLINYINEDSIIVIDEIDDCTKFANNWYIESVNNFDHFKDE 312 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + N KFE I ++ + ++ Sbjct: 313 ITQNLRSNNINIKVKPNLHEKFEYILKTFSDFIVINLYEFESKRNLDNRFLLSDKRIN-- 370 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + + L EI + ++V + + L EH YL Sbjct: 371 ---------SSSKNIGKLSKEINKFILNKDKVWILS---AQPLRTRSLLFEHDCNTNYLE 418 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLL--------REGLDMPEVSLVAILDADKEGFL 529 + + + + ++ EG +P ++ I D + Sbjct: 419 ---KPNDLDNAYKL-------IDIPTPVIIKNKNNYEIEGFYLPIWKIILITDKELFSQQ 468 Query: 530 RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 ++ I R R+VN I + + ++ + I G Sbjct: 469 ALFNNVF--IRRRKRSVN-------SNINVNKINPGDYIVHKNHGIGQFLKLEKINITGE 519 Query: 590 NKKVV--DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 ++ + L ++A + + R + + + + ++ + A Sbjct: 520 SRDYLVIKYLDGKISVAADQLGSINRYRSTGKIMPKINKLGGAEWLKIKDKNRKIIKKVA 579 Query: 648 QNL 650 ++ Sbjct: 580 YDI 582 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 113/326 (34%), Gaps = 29/326 (8%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + + +V +H + + + + +G R + N + Sbjct: 713 LKNNKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNID-------- 764 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S + + T I+ +D + + I Q Sbjct: 765 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGG 824 Query: 448 RVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ + L + + H ++ ++ + GE D+++ + Sbjct: 825 QIFYVLPRISDIDQAVNKLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTI 884 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P+V+ + I D+ K G + L Q GR R+ + P++ I Sbjct: 885 IESGLDIPKVNTIIIEDSHKFGLSQ----LYQLRGRVGRSG---IQAHAWLFYPNLNN-I 936 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E ++R K K E G G + D+ G + + + + + Sbjct: 937 NEASKQRLKAIKDFSELG---SGYQLAMKDMEIRGVGSLLGEEQSG-------KVNAIGY 986 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLE 651 D+ + L + I E+ G + ++ + Sbjct: 987 DLYIEMLHEAISEINGQEIPEVKDTQ 1012 Score = 49.4 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 57/144 (39%), Gaps = 7/144 (4%) Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 P +L +D +D ++ + + + I + ++V++ Sbjct: 614 QPTPDQLTAVKEIKIDM--ESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAP 671 Query: 455 TKRMAED----LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREG 509 T +A+ + +V L+ + E+ +I L+ + D++V + +L + Sbjct: 672 TTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDLVVATHQILGKE 731 Query: 510 LDMPEVSLVAILDADKEGFLRSER 533 +++ + L+ I + + G + E+ Sbjct: 732 IEIKNLGLLVIDEEQRFGVRQKEK 755 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 64/344 (18%), Positives = 108/344 (31%), Gaps = 42/344 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + + + M L + Sbjct: 126 TPGRLIDHLERGNLDLSAVEFAVLDEADEM-----------------LSVGFADAIETIL 168 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL----- 435 + + QT+ SAT N S + + V+ + V + Sbjct: 169 QKTPDSRQTMLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRT 228 Query: 436 --LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+++ E+ +V T TKR A++L L G LH D+ +R + R Sbjct: 229 RVLADLL-TIYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFR 287 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G VLV ++ GLD+PEV LV + S + GR R G AI+ Sbjct: 288 SGRVGVLVATDVAARGLDIPEVDLVVQYHLP-----QDPESYVHRSGRTGRAGRTGTAII 342 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + R ++ K+V A K Sbjct: 343 MYGDRENREVMGLERITGVRFIERPLPTP---------KEVQAASAKTSADMVRKVDSGV 393 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQNLEFEE 654 + E + + ++ +AL + + ++ G + A L EE Sbjct: 394 AATFQAEAERLFSELGLEALTRALAKISGVTEPTKAASLLSGEE 437 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 88/263 (33%), Gaps = 30/263 (11%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D++ L + + + + M L + Sbjct: 147 PGRLLDHIQQKNLDLSSTEILVLDEADQM-----------------LDLGFIKPIRQIVS 189 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDL 435 Q ++ SAT + +G + D V ++ V + L Sbjct: 190 RIPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRAL 249 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L+E+ R LV T TK A+ + YLE G +H + +R + + G Sbjct: 250 LTEMFSD-PEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKG 308 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + VLV ++ G+D+ VS V + + + IGR AR +G AI + Sbjct: 309 KLRVLVATDIAARGIDVDGVSHVVNFELP-----HVPEAYVHRIGRTARAGADGTAISFV 363 Query: 555 DKITPSMAKAIGETERRREKQQK 577 + K I + R++ Sbjct: 364 AGDEMKLLKDIEKVTRQKIPAID 386 >UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q299A2_DROPS Length = 743 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 34/284 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + A + V +++ + + M + V R Sbjct: 439 TPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRP------------ 486 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QTI SAT + + + + G LD +IE+ ++ Sbjct: 487 -----DRQTIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEK 541 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++ + ++++V K A+DL+ L G + +H D +R + I D+ Sbjct: 542 YGIIKSFIKNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADI 601 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G +L+ ++ GLD+ ++S V D F R+ + +GR R G +I Sbjct: 602 KSGVVRILIATDVASRGLDIEDISHVINYD-----FPRNIEEYVHRVGRTGRAGRTGTSI 656 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + MA+ + E Q E+ + K + + Sbjct: 657 SFITRSDWGMAQELINILE--EADQVVPEQLHSMARRF-KAMKE 697 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 96/306 (31%), Gaps = 33/306 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + M+ + Sbjct: 129 CPGRLLDHLNQGNVRFDGLETLVLDEADHMFD-----------------MGFLPDIKRIL 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-----PVATQVDDL 435 QT+ SAT + + D V G L P+ V Q L Sbjct: 172 AALPAKRQTLLFSATMPPAISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPL 231 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + A E V+V T TK A++L + L G + L ++ +R + R G Sbjct: 232 LLHLLGEAGK-ESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRG 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 F +LV ++ G+D+ +V+ V D + + IGR R G+A + Sbjct: 291 SFQILVATDIAARGIDVSQVAHVVNFDIP-----DTAEAYTHRIGRTGRAERDGQAHTFV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK---KVVDILALGQNIAKTKAKGR 611 M +AI ++ + + E P + Q + G Sbjct: 346 TGEDMGMVRAIESHMKKPLPR-RNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGY 404 Query: 612 GKSRPI 617 G + Sbjct: 405 GDRQRQ 410 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 118/352 (33%), Gaps = 36/352 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L S + + + M + + Sbjct: 128 TPGRVLDHMKRGSLHFGRISTLVLDEADKM-----------------MEMGFLEDVEQVI 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVD 433 Q + SAT + + + + + ++ V + + D Sbjct: 171 VHTPSQRQVLLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTD 230 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ + +V T+ + LT L+E+G + L+ D+ +R ++++ R Sbjct: 231 ALVDVL--EQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFR 288 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 F L+ ++ GLD+ V+ V D + S I +GR R GKAI Sbjct: 289 EIRFQFLIATDIAARGLDVEGVTHVINYDLPND-----VDSYIHRVGRTGRAGQKGKAIS 343 Query: 553 YGDKITPSMA----KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++ KA + R Q+ + + G + ++ I Q + + Sbjct: 344 LISPRQKNLMARFAKATKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQK 403 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + P+ E + P ++ EL L Q+ +N + EA R Sbjct: 404 EKDKEFSPVREAIKKKTKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARK 455 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 116/403 (28%), Gaps = 48/403 (11%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLP 369 +++ G P + + +++ G+ + L E L Sbjct: 102 HYVTTVFGGTPYGPQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLD 161 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVR 426 + QT+ SAT + + G + D V +E Sbjct: 162 MGFLPAVTTIVDATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQF 221 Query: 427 ---PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +LL + + + RV+V TK ED E L + G R +HSD Sbjct: 222 MMPIANFKKPELLQALLEEKGSD-RVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQG 280 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + R G +LV ++L G+D+P+V V D + IGR Sbjct: 281 QRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFDLPDM-----PEDYVHRIGRTG 335 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH-------------------- 582 R G A+ + + + I + + + Sbjct: 336 RAGEQGFAVSFVTRESRRTMSDIEKLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYK 395 Query: 583 ----GITPQGLNK------KVVDILALGQNIAKTKAKGRGKSRPIVEP----DNVPMDMS 628 P G + + D + A+ ++ R E D Sbjct: 396 GNKGSGRPAGAKRSDKRGGEKRDFERRSDSRAEGRSDNRPGRGKRAEGKRSFDGAAKPDG 455 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 P++ + M + + A Q ++ + Sbjct: 456 PRSNNMDHAKRRLEMNEKKREKSAPNAKGAAKQNGSKKKAGVG 498 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 99/303 (32%), Gaps = 16/303 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ L + +VV + L E L Sbjct: 110 YGGQNYSIQIKSLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIED 169 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPV 428 + QTI SAT + + + + Sbjct: 170 VENIFLKSSKQHQTILFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYG 229 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +++ LL + I + V++ TK ++++ LE++G L+ D++ + R + Sbjct: 230 LCKIEALLRFL--EVEIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKT 287 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + + G D+LV ++ GLD+ +SLV D + S I IGR R Sbjct: 288 LNRFKTGLLDILVATDVAARGLDVDRISLVINYDIPLD-----VESYIHRIGRTGRAGRT 342 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 GKA+++ + + I + + Q K + + LN I ++ K Sbjct: 343 GKALMFVENRERKILYNIERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNK 402 Query: 608 AKG 610 + Sbjct: 403 YQN 405 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 96/305 (31%), Gaps = 39/305 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + ++ + + M + Sbjct: 197 TPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALR-----------------RIA 239 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 + QT+ SAT E + + D + E Sbjct: 240 KMLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKAT 299 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL+E + +E +V TK +E L + L++ G +V +H + +R + R Sbjct: 300 LLAEYLSKHV-DELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRA 358 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 GE VLV ++ GLD+P+V+ V D + + IGR AR G+AI + Sbjct: 359 GETKVLVATDVAARGLDIPQVAHVYNYDLP-----NVPENYVHRIGRTARAGRDGRAIAF 413 Query: 554 GDKITPSMAKAIGETERRRE---------KQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 +AI + + + + K E G + Sbjct: 414 CSPTEIGELRAIEKAMKAKIAVVGGEEPFEAAKIRERGGPAGRPAQGARKRPARRPSRAP 473 Query: 605 KTKAK 609 KT + Sbjct: 474 KTAQR 478 >UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5_MONBE Length = 545 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 34/292 (11%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D+L L + S++ + + M L + Sbjct: 251 CELVIATPGRLVDFLNDGKLDLSHVSYLVLDEADRM-----------------LDMGFER 293 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVR 426 QT+ SAT + + + + G + +++V Sbjct: 294 DIKLILGAVGTQRQTLMFSATWPEEVRAIAANYMKNPLRVTVGSEELSANRNVKQVVDVV 353 Query: 427 PVATQVDDLLSEIRQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + LL +R+ A+ N +VL+ L K+ A L +L+ V +H D++ +R Sbjct: 354 EPMEKDRRLLDVLRKHPASKNAKVLIFALYKKEAARLESFLQRKSYNVVGMHGDLNQGQR 413 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 +R + G+ +L+ ++ GLD+ V++V F + + IGR R Sbjct: 414 EAALRAYKSGDSHILIATDVAARGLDVKGVAVVINY-----TFPLTIEDYVHRIGRTGRA 468 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 G A + + + A A+G RE + E Q +K + Sbjct: 469 GATGIAYTFFTQHDKAHAGALGNVL--READVEVPEALMKFGQHTKRKEHAL 518 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 92/279 (32%), Gaps = 30/279 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + M+ + Sbjct: 129 CPGRLLDHMNQGNVRFDALETLVLDEADHMFD-----------------MGFLPDIKRIL 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-----PVATQVDDL 435 QT+ SAT + + D V G + P+ V TQ L Sbjct: 172 SALPSERQTLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPL 231 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + A + V+V T TK A++L L G + L ++ +R + R G Sbjct: 232 LLHLLEEAGK-QSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRG 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYG 554 F VLV ++ G+D+ +V V D + + IGR R G+A + Sbjct: 291 SFQVLVATDIAARGIDVSQVGHVVNFDIP-----DTAEAYTHRIGRTGRAEHEGQAHTFV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 M +AI ++ +++ E P + Sbjct: 346 TGEDMGMVRAIESHMKKPLPRREV-EGFEPDPSEFRRSY 383 >UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF18_9BACT Length = 1143 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 69/439 (15%), Positives = 143/439 (32%), Gaps = 49/439 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 +T ++ + + P V + ++ L A + Q Sbjct: 591 VTQEVKADMESLR--PMDRLVCGDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQH 648 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + E + G +LS + ++ L + ++ +H I + Sbjct: 649 YRTFAERL------KGFPVRVAYLSRAKSAKETKSILHDLAEGHINIIVGTHKLIGKTVR 702 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + ++G + L + T+ +SATP L+ S Sbjct: 703 FQDLGLLIIDEEQKFGVAVKERLREL--------KVNVDTLTMSATPIPRTLQFSLMGAR 754 Query: 410 DQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D V T + I+ + + + + N +V + T L +E+ Sbjct: 755 DLSVIQTPPPNRRPIQTEIHTFNHEIIAEAVNFEMSRNGQVFIVTNRVASLGSLKALVEK 814 Query: 469 HGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R + H + E +II D ++DVL+ ++ G+D+P + + I A Sbjct: 815 YVPDARVVVGHGQMAPAELEKIILDFVNYDYDVLISTTIVENGIDIPNANTILIDAAHTF 874 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P ++ + + RRR + + + G Sbjct: 875 GLS----DLHQMRGRVGRSSQ---KAFCYLLAPPLS-ILKDDARRRLQAIEEFSDLG--- 923 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G++ + D+ G N+ + G ++ + K L + + EL+ Sbjct: 924 SGIHIAMQDLDIRGAGNLLGAEQSGF--------IADLGYETYQKILAEAVSELKSE--- 972 Query: 646 HAQNLEFEEAAQIRDQLHQ 664 E A D L + Sbjct: 973 -------EFADLYADSLKK 984 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/424 (13%), Positives = 128/424 (30%), Gaps = 48/424 (11%) Query: 59 PTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 + +A ++ A Y ++ + E V ++ S + + Sbjct: 62 TLLFVADDEETAGYFYHDLIQLLGEADVFFYPSMFKRAVKYGQ-------------RDAA 108 Query: 119 IEQMRLSATKAMLERRDV--VVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRR 175 + +R + + +V +A+ + + + D A+ R Sbjct: 109 NDILRTEVLDRLASQNPAGTCIVTFPAALATRVAAKADMAAKTIVIEEEGHYDLTALEER 168 Query: 176 LAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 L E + R D ++ G F VRG ++D++ S+ R++ F ++V+ + F+ T Sbjct: 169 LLEFGFKRKDYVYEPGDFAVRGSILDVYSFASE-FPFRIDFFGDDVDSIRSFEVQTQLSK 227 Query: 236 STIPRFTIYPKTH-------------------YVTPRERIVQAMEEIKEELAARRKVLLE 276 + TI P E I + I +E R + Sbjct: 228 ERLQAVTIVPDVDATGGDNVAFTDYLPESSLVITREPEYIRDVINNIYDEGFTREAAMSG 287 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG--L 334 E +R T Q DL + + + R P L + Sbjct: 288 EWAAYEGERDTDLPQADLPTPQAEPDKAKLLVKGDEIYDRLRAFPNFLLAQGTTPAAAKI 347 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + ++ + + D+R + + LA + + Sbjct: 348 QFHTTPQPIFHKNFDLVQRAFSDY---LDQNYTIYITADSRKQQQRLADILAEKGGNSTF 404 Query: 395 TPGNYELE--KSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLLSEIRQRAAINE 447 TP + L S ++ + D + ++ L+E+ Q + Sbjct: 405 TPVDQTLHAGFSDENLRICCFTDHQIFDRYHKYSLRSDHARDAKMALTLNELLQFHPGDY 464 Query: 448 RVLV 451 V + Sbjct: 465 IVHL 468 >UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Prevotella RepID=C5VMF4_9BACT Length = 1178 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 19/323 (5%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 Q AI+++++ + + L G+ S A++ + T+ + + Sbjct: 8 KLYAMLPQAGAIQKIQK--DKSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVLNDNDE 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Y ++K + PSS K + E +R Sbjct: 66 AGYFYNDLKTIAMPAD------GEGKVAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTR 119 Query: 130 ML-------ERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + + +V SA+ L + L LTV ID + + L + Sbjct: 120 LSALASDADNALPLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGF 179 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 D ++ G F VRG +ID++ S+++ R++ F +++E + F+ T + R Sbjct: 180 TETDYVYEPGQFAVRGSIIDVYS-FSNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRV 238 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 I P T E V ++ + E+ K L ++ T L E Sbjct: 239 EIVP--ELTTMSEEKVPFLQFLPEDAVLAFKDFLYVRDAIDNIYQEGFTNQALTEKLEGK 296 Query: 302 YCSGIENYSRFLSGRGPGEPPPT 324 G P Sbjct: 297 TELEQRELEVAFRKEGQLVPASR 319 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 69/433 (15%), Positives = 141/433 (32%), Gaps = 39/433 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T ++ + P V + I+ A + Q Sbjct: 621 ATQELKQDMESAR--PMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQH 678 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 Q + + ++ +LS + + + L + ++ +H I + Sbjct: 679 YQTFKKRLKDMP------VRVDYLSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSVK 732 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + ++G L T+ +SATP L+ S Sbjct: 733 WHDLGLLIIDEEQKFGVSTKEKLRQL--------KTNVDTLTMSATPIPRTLQFSLMGAR 784 Query: 410 DQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D + T + I+ + + + I + N +V ++ +++ Sbjct: 785 DMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNGQVYFVNDRISNLPEIANLIKK 844 Query: 469 HGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R H + E EI+ ++DVL+ ++ G+D+ + + I DA + Sbjct: 845 YVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISNANTIIINDAHRF 904 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P +A A+ RRR + + + G Sbjct: 905 GLS----DLHQMRGRVGRSNK---KAFCYLLAPPLA-ALNPEARRRLEALETFSDLG--- 953 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G N + D+ G N+ ++ G +++ + K L Q + EL+ Q Sbjct: 954 SGFNLAMQDLDIRGAGNLLGSEQSGF--------MEDLGYETYQKILNQAVMELKNDEFQ 1005 Query: 646 HAQNLEFEEAAQI 658 E +E QI Sbjct: 1006 DLYEEEMDEGKQI 1018 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 106/305 (34%), Gaps = 18/305 (5%) Query: 299 ELGYCSGIENYSRFLSGRGP----GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 L + I Y+R+L R G P L + ++V I + G Sbjct: 89 ALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKMLRRNPDILVATPGRLIDLFDQGFIGL 148 Query: 355 RARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + ++ E L + + E + QT+ SAT + + + V Sbjct: 149 DQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQTLLFSATLSPEIEALASRMLREPVR 208 Query: 414 RPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 + + + + +LL + + I +R LV T TK+ A + E L Sbjct: 209 IEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKENDI-KRALVFTRTKQRANHVAEQLI 267 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G +HS R + G+ +VLV ++ G+D+ +S V + Sbjct: 268 RLGISADAIHSSKSQRARQRALMLFDRGKINVLVATDIAARGIDVDGISHVINYELP--- 324 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + + IGR AR +G A+ + D M K I + + N H I Sbjct: 325 --DDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEKLTKSSIAICDNNPFHSIAV 382 Query: 587 QGLNK 591 ++K Sbjct: 383 ASMHK 387 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 53/342 (15%), Positives = 111/342 (32%), Gaps = 15/342 (4%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + E ++ + L + +++ EL + + G+P L Sbjct: 67 MSEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNIL--PIYGGQPIDRQLRALRNGV 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + + L E L + + + QT+ Sbjct: 125 DIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLF 184 Query: 393 SATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE- 447 SAT + S + + + I + D + + +E Sbjct: 185 SATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244 Query: 448 -RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TK+ ++L ++ G V +H D++ +RM ++ + D LV ++ Sbjct: 245 EAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVA 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ V+ V D + S + IGR R GKA + K I Sbjct: 305 ARGIDVENVTHVINYDLP-----QDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQI 359 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 +T + + K+ I + + +N +K Sbjct: 360 EKTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSK 401 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 97/293 (33%), Gaps = 12/293 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSA 371 + G+P L +++ I I D L E L Sbjct: 104 ILPVYGGQPIERQIKALSRGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMG 163 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPV 428 + QT+ +SAT L+ S + + + P IE + Sbjct: 164 FREDIEEILSHIPKERQTVILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYI 223 Query: 429 ATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + + +R ++ T+ + ++ L+ G LH + +R Sbjct: 224 EVREPAKADTLIRVLEFYQPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRD 283 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +++ R G+ ++L+ ++ G+D+ E+ LV D F + + + IGR AR Sbjct: 284 KVMNAFRKGQLEILIATDVAARGIDVEEIDLVCNFD-----FPQDDEYYVHRIGRTARAG 338 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G+AI + + + + R + I + + D A Sbjct: 339 RTGRAISFVSPRERYRLRDVRRSTRAEPEPLPIPTLREIGGKKATTTLADADA 391 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 97/302 (32%), Gaps = 12/302 (3%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSA 371 + G+ L +VV + + + D R L E L Sbjct: 107 IEAIYGGDSIDRQIRSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMG 166 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPV 428 QTI SAT + + + D + + IE Sbjct: 167 FREDIESILADMPEDRQTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYF 226 Query: 429 ATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + + + ++ + +LV TKR +++ E L+ G +H D+ +R Sbjct: 227 EVKPQAKVEVMTRLIDMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRS 286 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 ++ + G +LV ++ G+D+ + V D + E + IGR R Sbjct: 287 NVMSKFKAGVTTILVATDVAARGIDVSGLDGVINYDIPMD-----EEYYVHRIGRTGRAG 341 Query: 547 -NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 +GKA + K+I + + ++ I + V +I + Sbjct: 342 MSGKAFSLVARDEKYRLKSIESYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESND 401 Query: 606 TK 607 + Sbjct: 402 EE 403 >UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA) III beta n=1 Tax=Hydra magnipapillata RepID=UPI0001927315 Length = 1349 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 108/332 (32%), Gaps = 47/332 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L ++ + + ++ + + M + + Sbjct: 235 TPGRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIR---------------- 278 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---------------DPIIEV 425 QT+ SAT + + V G++ +I + Sbjct: 279 -CLPRKRQTLMFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILL 337 Query: 426 RPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + +L++ I+ + + VL+ K + LT L G +H D D Sbjct: 338 NSGEDKDGELINLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKY 397 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + + R G ++V +L G+D+ +S V D S + IGR R Sbjct: 398 REKTLAAFRDGSRPIMVATDLASRGIDVRGISAVINYD-----LANSTEDYVHRIGRTGR 452 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 +G++ + + + KAIG + + G P +++++ + + Q Sbjct: 453 AGMSGESFTFLTRSNDDIWKAIGIV--------EVMAKTGQYPPPAVQELINRVKMRQEQ 504 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 K + + V ++ +Q Sbjct: 505 NKERRAAENEQFSKVLIVAEKPSVAKMIAEQL 536 >UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa RepID=Q9GV12_HYDMA Length = 890 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 27/304 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 +L E R ++ G + + P L D++ + + Sbjct: 544 QLFTEARKFSYNSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGRLEDFIKRGKVNFQN 603 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + +P T+ SAT + Sbjct: 604 LKYLILDEADKMIDMGFGPQIEHIIEFSGMPP-------------KGIRNTLMFSATFPD 650 Query: 399 YELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVT 452 + + D + G D V V+ + + L + Q + + + LV Sbjct: 651 QIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLENLLQTSGTD-QTLVF 709 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 KR A+ L +L + L +D +R +RD R G +LV + GLD+ Sbjct: 710 VEKKRDADFLANFLSQKNFPPTILFADRTREKRESALRDFRNGIAPILVATAVAARGLDI 769 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETER 570 +V V D K+ + IGR R GKA + D S+A+++ + Sbjct: 770 NDVKHVINYDLPKDAN-----EYVHRIGRTGRIGNKGKATSFFDLDRDGSLARSLVKLLS 824 Query: 571 RREK 574 E+ Sbjct: 825 DAEQ 828 >UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LK58_CORK4 Length = 558 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 94/305 (30%), Gaps = 16/305 (5%) Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + L + DL + E+ S ++ G P L +V Sbjct: 176 RELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHPFEKQIAQLREGTDCIVGTPGRL 235 Query: 344 IPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + L E L K + QTI SAT + Sbjct: 236 LDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKILQQVPEKRQTILFSATMPAPIMA 295 Query: 403 KSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTL 454 + + V +V +++ L LS I Q R ++ T Sbjct: 296 LARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNKLATLSAILQAHNRG-RTIIFTR 354 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR A D+ + L + G V +H D+ R + + R + ++LV ++ G+D+ + Sbjct: 355 TKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAFRSKKIEILVATDVAARGIDVDD 414 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ V + + IGR R G A+ + K I + Sbjct: 415 VTHVINYQVP-----DDAMTYVHRIGRTGRAGHTGTAVTLVGWDEVTKWKVIDDELDLNI 469 Query: 574 KQQKY 578 + Sbjct: 470 GELDE 474 >UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7_9CHLO Length = 462 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 87/288 (30%), Gaps = 36/288 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + + + M + + Sbjct: 179 TPGRLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIR-----------------EIA 221 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + + + V G + ++EV + Sbjct: 222 GKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLKASHSVTQVVEVVEPNEKD 281 Query: 433 DDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L +++ + R LV L K+ L E L + +H D+ +R + Sbjct: 282 AHLARVLKKYLGGKKPVPRTLVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSV 341 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + G +L+ ++ GLD+ V V F + + IGR R G Sbjct: 342 EAFKSGSSPLLIATDVAARGLDIKGVEYVINY-----TFPLTTEDYVHRIGRTGRAGQTG 396 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 A + + + A + RE + + KK + Sbjct: 397 LAHTFFTQHDKARAGELANVL--REAGAEVPTALTAFGTHVKKKESKL 442 >UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0C015_PARTE Length = 532 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 33/346 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L A + + +++ + + M ++ K + Sbjct: 198 TPGRLIDFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVR-----------------KID 240 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLDPIIEVRP-------VATQV 432 + QT++ SAT + + + G + I + Sbjct: 241 SYIREDRQTVFFSATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEK 300 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L I + + ++VL+ TK+ EDL YL EHG LH D +R ++++ Sbjct: 301 QEELLYILEELSNKDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEF 360 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + + +L ++ GLD+ ++SLV D F + + IGR R G++I Sbjct: 361 KASKCKLLCATDVASRGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGRAGDKGRSI 415 Query: 552 LYGDK--ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + P +AK + + + E+ + + K N Sbjct: 416 TMITLDAMDPRVAKQLVDLLKDSEQVVNDDLYDFAYSKPYQKSKRPNQRKKPNDKPITQS 475 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 S + + KA + F +A Sbjct: 476 KPVNSNNLNTQKPQQKQFNLKASSPVKQSTSSMPPPPELKKAFSDA 521 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 113/357 (31%), Gaps = 20/357 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G+ L +VV + + + D L E L N Sbjct: 126 YGGQDVEKQLHKLQRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNE 185 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPV 428 + QT+ SAT + + S + + P ++ + Sbjct: 186 MELIISQTPASRQTMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTD 245 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + L+S IR+ ++ T R A L + L+ LH D+ +R ++ Sbjct: 246 RAKQNALISRIRE--DRPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKV 303 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 ++ R E L+ ++ GLD+ V+ V D + S + IGR R + Sbjct: 304 MKKFRNAEIQFLIATDVAARGLDVEGVTHVYNYDIP-----QDSESYVHRIGRTGRAGKD 358 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G A+ + + + KAI + R +++ T G D + + Sbjct: 359 GLAVTFYAEKDEAALKAIEQELNIRLPKEESTATANTTADGEKSSSGDKPKNRSDRDRRA 418 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + R + S + + E + + + E + D+ + Sbjct: 419 GGAESRRRTGGRTEGRG---SREVRSTRSGERRNRSSEGRRA-DGEIRSYTHDERRE 471 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 97/307 (31%), Gaps = 12/307 (3%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-G 348 T+ E +N+ G + R ++ G G T L +VV + I Sbjct: 79 TRELAEQINDALNGMGKQTRLRSVTVYG-GVNINTQIKKLKEGAEIVVACPGRLLDHISQ 137 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E K Q + SAT + + + Sbjct: 138 GTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPDDIRRLAHEIL 197 Query: 409 VDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + V P V PV + L + E VL+ T TK A+ + E Sbjct: 198 RNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTESVLIFTKTKHRAKRVGE 257 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 LE+ G + L ++ R + R G F ++V ++ G+D+ +S V D Sbjct: 258 QLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAARGIDVSLISHVINYDIP 317 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + IGR R G A ++I + + ++++ Sbjct: 318 -----DTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGTKIERRRIEGFDY 372 Query: 584 ITPQGLN 590 P Sbjct: 373 AVPAPQK 379 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 88/618 (14%), Positives = 172/618 (27%), Gaps = 114/618 (18%) Query: 40 VTGSGKTFTIANVIADLQ-RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 V+ S + F +A + RP +V+A + A L +M+ + V ++ Sbjct: 27 VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFY--------- 77 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA---IYGLGDPDLYL 155 PS E + H+ +R++A A++ R V + + Sbjct: 78 ----PSRGVAYESHLAPPAHLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNPALR 133 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 L VG ++D L Y R DQ RG F +RG ++D++PA ++D A+RV+ Sbjct: 134 PHGFTLRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRVD 192 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF +E+E L F T + + + P ELA + Sbjct: 193 LFGDEIESLRWFSTFTQRSLGDAEEVEVSPAAELAPE-----------HRELAEIAALED 241 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 +N+ ++ P + D +P ++ Sbjct: 242 ADNR-------------------------------PDIAELLPVGDFHAMLDLVPDAAVM 270 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + E + A +T + + E +A + + + Sbjct: 271 IAAEEEIAPALRDHWQDVCTAFHDTDAH----------DLYVAPEAVQAALGERARIHLS 320 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + +V + + E+ + R +V Sbjct: 321 SIDGGQPLAFRG-------------QAADVAARGVKEAEP--ELEKLVRSGYRTVVAFGR 365 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L +VR++ D LR+G P Sbjct: 366 RGEGDRAAYNLGRM--KVRWVDGDAPRG----ADLAFVEAR---------LRDGFIAPGF 410 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 L I + + G R G + D T + Sbjct: 411 RLAVI---PEHRLFHRRPARTAGTG-TGR-RRGALRSFTDLRTGDI------VVHEDHGL 459 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKAL 632 ++ T G+ + +++ G + K V + + Sbjct: 460 ARFAGFDTKTVAGVTRDYLNLEYAGSDKVFMPVDQFAKISRYVGAGGDHPPLSKLGGRRW 519 Query: 633 QQKIHELEGLMMQHAQNL 650 + A L Sbjct: 520 DTLKARARRAAQEMAGEL 537 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 113/401 (28%), Gaps = 35/401 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E + + + Sbjct: 590 PMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHYGTFAERLKDYPFT- 648 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S P + ++ +H + + + + Sbjct: 649 -----IEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRF 703 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L L I +SATP L+ S + D V T Sbjct: 704 GVKQKELLRQL--------KLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPV 755 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ I + + + ++ E L R H +D Sbjct: 756 KTYVGEYDEQLVKSAIERERSRGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLD 815 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + GE DVLV +++ G+D+P+ + + + AD G + L Q GR Sbjct: 816 EKTLEERMLRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQ----LYQIRGR 871 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + PS + + +R Y E G + D+ G Sbjct: 872 VGRSRER---AYAYLLYPSASALTADAAQRLSALSDYTE----LGAGFKVAMRDLEIRGA 924 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + ++ + L + + E+ G Sbjct: 925 GNLLGDEQSG-------HVAALGFELYMQMLDEAVQEMGGE 958 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 87/278 (31%), Gaps = 27/278 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + ++ + + M + + +P+ Sbjct: 293 TPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVEKTGMPAPGQRI----- 347 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 T+ SAT + + + + G + E V + D Sbjct: 348 --------TLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFVYCKDDEKRD 399 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ E LV TK+ A L +L ++G + +H D ER + + R Sbjct: 400 LMLEAIASVET--LTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETALENFRR 457 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G +LV ++ GLD+ +V V D + + IGR R G + + Sbjct: 458 GITPILVATDVASRGLDINDVGHVINYDLP-----ENIEDYVHRIGRTGRAGNTGISTSF 512 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 +A + +++ G K Sbjct: 513 FTDKNNQIADDLITVLEEAKQEVPPFIVEGRDKLRYAK 550 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/357 (17%), Positives = 117/357 (32%), Gaps = 12/357 (3%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G + F L VV + I + + R L E L + Sbjct: 110 YGGSDFGSQFRALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDD 169 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQV 432 + Q SAT + + + + IE + + Sbjct: 170 VDWVLDQVPEKRQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKG 229 Query: 433 DDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 D + + + + ++V TK+ E++ +Y+ HG R L+ D+ +R + Sbjct: 230 VDKNQALLRICETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVD 289 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 L+ G+ D+LV ++ GLD+ +S V D S + IGR R G+ Sbjct: 290 RLKKGQVDMLVATDVAARGLDVERISHVVNYDIP-----YDAESYVHRIGRTGRAGRSGE 344 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 AIL+ M I R++ +Q + + + ++ V L + K Sbjct: 345 AILFVRPRERRMLSTIERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFK 404 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +P P++++ Q M + + E R + + R Sbjct: 405 KIASEILAEQPALDPIELAAAFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERR 461 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 110/356 (30%), Gaps = 44/356 (12%) Query: 22 RRLEEGLEDG-LAHQTLLGVTGSGKTFTIANVI-----ADLQRPTMVLAPNKTLAAQLYG 75 + L + L + G+ GS + + A+ + +++ ++ A Y Sbjct: 17 QMLAQYLSSSTPERVQVKGLVGSLDSVMASATYKIHTEANQRINHILVLHDRDEALYFYN 76 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----- 130 +++ + + +F S Y K V R + Sbjct: 77 DLQNLLGKKNIWFFPSSYKR-------------PYKFMEVENANILERAEVLNRINQQIS 123 Query: 131 -----------------LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAI 172 + ++V SA+ + L+ VG +D + Sbjct: 124 NPQVVSIDAGKANEENPTNQEGFMIVTYPSALVEKVINKRSLLENTFTAEVGEKVDIEFL 183 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 L + + D ++ G F +RG ++DIF S+D R+E FD+E+E + LFDP + Sbjct: 184 AEILHTYDFDKTDFVYEAGQFSIRGGIVDIFS-YSNDYPYRLEFFDDELESIRLFDPESQ 242 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + + I P +E + + K ++ + F Sbjct: 243 LSIEQVSQIAIIPNVQTKLVQEVRESFLNFVPNNTKVWLKDYDATMDVIRKSFTKVANNF 302 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 E++ + G I + + E F + + + Sbjct: 303 -KEILEKSGNTQVINDPDVLFETQASFEEKLLEFTTVEFGKRFHFKSDKRLVQEAK 357 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 124/400 (31%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ A + Q + + + + Sbjct: 606 PMDRLVCGDVGFGKTEVAIRAAFKAVYDGKQVAILVPTTILALQHYKTFKNRLEK--FPC 663 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE +RF + + + + ++ +H + + + ++ Sbjct: 664 NIEYINRFKTSKQIKATLKEV----NEGKVDILIGTHRIVNKDVQFKDLGLLVIDEEQKF 719 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + + ++ATP L S D + T L+ Sbjct: 720 GVKTKERLKEMRVNVD--------VLTLTATPIPRTLHFSLMGARDLSIIQTPPLNRQPV 771 Query: 425 VRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 T D+++ + +V + + + + H ++ Sbjct: 772 TTEQHTFNDEVIRDAISFELRRGGQVFFVHNRVKDIISIANNVLKLVPDAHVGVAHGQME 831 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + + GE+DVL+ N++ GLD+P + + I A G L Q GR Sbjct: 832 GPKLEKTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIIDMAHTFGLA----DLHQMRGR 887 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P+ + + RRR + + G G + D+ G Sbjct: 888 VGRSNR---KAYCYLLAPA-STLLNVESRRRLSALEEFSDLG---DGFKIAMRDLDIRGA 940 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N+ + G ++ +M K L + I EL+ Sbjct: 941 GNLLGAEQSGF--------ISDLGFEMYHKVLDEAIQELK 972 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 94/281 (33%), Gaps = 14/281 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ + L ++V + G+ + + E L + Sbjct: 123 YGGQAYAGQLNQLKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDD 182 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVR--PVA 429 E Q SAT + + + D + T D I + Sbjct: 183 VEWILEQTPPGRQVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKG 242 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 T D L+ I + + ++V TK +L E LE G L+ DI R I Sbjct: 243 THKLDALTRILEAETFD-AIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTI 301 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + G+ D+LV ++ GLD+ VS V D S + IGR R G Sbjct: 302 DRFKKGKIDILVATDVAARGLDVERVSHVINYDIP-----NGAESYVHRIGRTGRAGRAG 356 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 AIL+ M K I +T R++ + K I + + Sbjct: 357 DAILFVSPRERWMLKVIEKTTRQQIEMMKLPSTEAINDKRI 397 >UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 Tax=Euteleostomi RepID=DDX43_HUMAN Length = 648 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 100/296 (33%), Gaps = 21/296 (7%) Query: 325 LFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + L +++ Q+ L E L + + +K Sbjct: 358 QIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDV 417 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLL 436 QT+ SAT + + + + ++ G LD + + + + Sbjct: 418 RPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 Q + ++V+V K +A+ L+ L V LH D + +R + + + + G+ Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 +L+ +L GLD+ +V+ V D F R+ + IGR R G +I Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFD-----FPRNIEEYVHRIGRTGRAGRTGVSITTLT 592 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGL-----NKKVVDILALGQNIAKT 606 + +A + R + EE + +++ + Q K Sbjct: 593 RNDWRVASELINILERANQSI--PEELVSMAERFKAHQQKREMERKMERPQGRPKK 646 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 88/265 (33%), Gaps = 18/265 (6%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + I G + R L E L + Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--------EVRPVATQVDDLLSEI 439 Q+ + SAT + LE + + + + + EVRP +VD + Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFR-RVDAVCRIF 239 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V TK+ ++L L++ G LH D++ +R ++ R G V Sbjct: 240 DAYIPR--KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISV 297 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ +V V D + + + IGR R G+A + Sbjct: 298 LVATDVAARGLDVDDVDTVINFDLPND-----PETYVHRIGRTGRAGRTGRAFSFAAGRD 352 Query: 559 PSMAKAIGETERRREKQQKYNEEHG 583 + I R ++ Sbjct: 353 VYKLRDIQRVTGSRIDRRAMPTAAD 377 >UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE69 Length = 610 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 93/272 (34%), Gaps = 36/272 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + +++ + + M+ + Sbjct: 331 TPGRLLDFLNSGTTNLERCTYLVLDEADRMFDMGFEPQIR-----------------SII 373 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 + Q + SAT + + D + G ++ I+ V Sbjct: 374 DQIRPDRQVLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDK 433 Query: 433 DDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L + +++ +E + L+ T TK+ ++ + +L++ G R LH R I+R Sbjct: 434 KKLQNVLKEIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFILR- 492 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 G +LV ++ GLD+ ++ V D + + I IGR R N G + Sbjct: 493 ---GRIKILVATDVAARGLDVSDIRYVINYD-----YPNNMEDYIHRIGRTGRHNATGTS 544 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + S A + R + + E+ Sbjct: 545 YTFLTDEDASKAGDLISVLREANQNVDPDLEN 576 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 24/375 (6%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + L + L++ EL S + R L+ G + D L A +VV Sbjct: 71 QSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRD-LKAGAHIVVGTPG 129 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I + + L E L QT+ SAT Sbjct: 130 RIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATLAPPI 189 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRP------VATQVDDLLSEIRQRAAINERVLVTTL 454 L + + + + I +Q +++++I + +L+ Sbjct: 190 LALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIID-LNNLQLMLIFCN 248 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR E++T+ L+ +G LH D +R E++ R G ++LV ++ G+D+ Sbjct: 249 TKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAARGIDVTG 308 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V V D + + + IGR R GK+ + I + Sbjct: 309 VDAVINYDVPLD-----IENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKATI 363 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 ++ + + K + + + A Q Sbjct: 364 EKAETPTRQELVAY----KKDKLATRITTELEKPNIKIWSDLL-----EEYKEKGITADQ 414 Query: 634 QKIHELEGLMMQHAQ 648 I L M A+ Sbjct: 415 IAIALLSKEMKDLAE 429 >UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N3K2_9CHLO Length = 663 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 108/331 (32%), Gaps = 31/331 (9%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 +E +L + ++ G + + L P L D++ Sbjct: 238 HVEARRLAFDPAAMTSATALRAVVVYGGADAKAQLRELALGVDVLVATPGRLTDFVDRGV 297 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + + H+ + + M + + L+ + A QT+ S Sbjct: 298 VSLARVKHLILDEADRMLDMGFEPQIRKI-------------VLQRDMPPKHARQTLMFS 344 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD--------DLLSEIRQRAAI 445 AT + + + + D G + + ++ DLL +A Sbjct: 345 ATFPDSIQKLAREFLRDYTWIGVGRVGSTVNAIAQHFELATCDKRHKLDLLIAALAKAPP 404 Query: 446 NERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 LV KR A + L ++HG R +H D +R + + G+ V+V + Sbjct: 405 PALTLVFVQKKRTAAWVAGQLSKQHGVRAESIHGDRTQSQREAALASFKSGKAPVMVATD 464 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY----GDKITP 559 + G+D+P V+ V D S + IGR R G A + D T Sbjct: 465 VAARGIDVPGVAHVVNFDLPT--AADDFDSYVHRIGRTGRAGREGMATSFFVPGFDPKTG 522 Query: 560 S--MAKAIGETERRREKQQKYNEEHGITPQG 588 + +A I R ++K+ +G + Sbjct: 523 NGKIASQIATLLREQKKEAPAFIANGGGGRA 553 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 85/265 (32%), Gaps = 29/265 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + V + I + M+ Sbjct: 127 CPGRLLDHIWRGTIDVCGVETLIIDEADRMFD-----------------MGFQPDIQSIL 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-----VATQVDDL 435 + QT+ SAT + + + V G P+ V + Q L Sbjct: 170 KCLVQPHQTLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPL 229 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L EI + + VL+ TK AE+L + + + G L ++ R ++ R G Sbjct: 230 LLEILKTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRG 288 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 F +LV ++ GLD+ +S V D S IGR R G+A Sbjct: 289 NFKILVATDIAARGLDIDHISHVINYDMP-----DSPEDYTHRIGRTGRFDRTGQAFSLV 343 Query: 555 DKITPSMAKAIGETERRREKQQKYN 579 M + I ++ + + Sbjct: 344 TGRDGDMVRDIQRLLSSPIQRLRVD 368 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 96/313 (30%), Gaps = 16/313 (5%) Query: 329 LPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + +++ G+ + R L E L N + + Sbjct: 207 IAPGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAER 266 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQVDDLLSEIRQR 442 QT SAT + + D V + V PV T+ L Sbjct: 267 QTALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLT 326 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A V+V T TK A+ + +LE V +H + R + R G +LV Sbjct: 327 DADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVA 386 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT-PS 560 ++ G+D+P +S V D E + + IGR RN +G +I D T S Sbjct: 387 TDIAARGIDVPGISHVVNYDLPDE-----PETYVHRIGRTGRNGASGASITLYDPATEES 441 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 +A+ R + + + P A+++ K R + Sbjct: 442 KLRAVERVTRSKLSIKDAPVKLAPAPVAKGPA---PQGQRTEQAESRKAPAHKHRRPAQK 498 Query: 621 DNVPMDMSPKALQ 633 A Sbjct: 499 AGEQHRAGAHASA 511 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 95/306 (31%), Gaps = 16/306 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+P + D L +VV + G L E L Sbjct: 117 YGGKPIKSQVDKLKKGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPD 176 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQV 432 + + QT+ +SAT + + + + + D IE + + Sbjct: 177 IERILKRCPRERQTLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEH 236 Query: 433 DDLLSEI--RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 D + ++ +V TKR + + + L + +H D+ +R ++ Sbjct: 237 DRKFDLLMKLLLREEPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMA 296 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 R G LV +++ G+D+ VS + D + +GR R G Sbjct: 297 GFRDGSVRYLVATDVIGRGIDVSTVSHIVNFDIPVF-----CDDYVHRVGRTGRMGREGV 351 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL-NKKVVDILALGQNIAKTKA 608 A + P + E R K K +E P G + A Q I+ Sbjct: 352 AYTFV---CPDEGHELTRIEERINKLLKRDEMRDFEPVGYGERSARAPAAPTQVISGKYM 408 Query: 609 KGRGKS 614 G S Sbjct: 409 HGGNAS 414 >UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 Tax=Amniota RepID=D2I3Z4_AILME Length = 645 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 15/341 (4%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E LT + L++ E S + + G + D + Sbjct: 310 REERNGPGMLVLTPTRELALQVEAECSKYSYK--GLKSICIFGGRNREQQIRDITKGIDI 367 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ + Q+ L E L +++ +K QT+ +SA Sbjct: 368 IIATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTVMISA 427 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINE 447 T + + + + ++ G LD + + + LL E Q + + Sbjct: 428 TWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQEFLQNRSPQD 487 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V+V + +A+DL+ L G V+ LH D D +R + D R G+ VL+ +L Sbjct: 488 KVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVLIATDLAS 547 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 GLD+ +++ V D F R+ + +GR R G +I + +A + Sbjct: 548 RGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIATELI 602 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + +R + + L+K+ D + Sbjct: 603 KILKRANQSVPEDLLTMAEQYKLHKQKKDTGKRKSQGKSRE 643 >UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V4T2_NAEGR Length = 452 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 97/300 (32%), Gaps = 38/300 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L A + S++ + + M L + + + Sbjct: 166 TPGRLLDFLQAGITNMKRCSYLVLDEADRM-----------------LDMGFNPQISQIT 208 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD---QVVRPTGLLDPIIEVRPV-------AT 430 QT++ SAT + V + G ++ R + Sbjct: 209 SQVTPDRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQSFLFIQES 268 Query: 431 QVDDLLSEIRQRA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L+++ + + R LV TK+ + +TE L E G +H + ER Sbjct: 269 DKIARLTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREW 328 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 ++ + R G+ +LV ++ GLD+ V V D E S I IGR R Sbjct: 329 VLEEFRSGKTPILVATDVAARGLDVENVKYVINYDMPHE-----IDSYIHRIGRTGRAGK 383 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G ++ + + + + E +Q ++ K D+ Q Sbjct: 384 EGNSVSFFTPEDVQLCTPLIKVLE--EAEQDVPDKLVKLRDLSTKSHGDLSIKEQRQKDK 441 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 92/302 (30%), Gaps = 16/302 (5%) Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD-RARKE 359 + + +N + G + L ++V + R Sbjct: 92 SFTTYGKNLGLRTAVVFGGVGQRPQMEALRRGVDVLVATPGRLLDLCSQGIAPFGRLDTL 151 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 L E L + + QT+ SAT L+ + + V + Sbjct: 152 VLDEADRMLDMGFIHDIRRVLAMLPERRQTLLFSATMPPDILKLANSILRSPVRVEVARI 211 Query: 420 DPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 E V + +L + + A+ R +V T TK A + + L Sbjct: 212 ATTAENIDQRVVFVERSDKRAMLEHVLKDPALR-RAIVFTRTKHGANRVVQQLSRARIEA 270 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H + R + + G VLV ++ G+D+ ++S V D Sbjct: 271 VAIHGNKSQGARERALASFKQGTTSVLVATDIAARGIDIDDISHVINYDLP-----NIPE 325 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN--EEHGITPQGLN 590 S + IGR AR +G A+ + D + I ++R I P+ Sbjct: 326 SYVHRIGRTARAGASGVALSFCDSEERAYLADIERLIQKRLPLLADPGVPVFQIDPRPAQ 385 Query: 591 KK 592 + Sbjct: 386 QA 387 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 15/304 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSA 371 + G+P L +VV + I D R L E L Sbjct: 105 ILPVYGGQPMGVQIRALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMG 164 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIE 424 E QT SAT + + + G +D Sbjct: 165 FVEEIEWILEQTPAERQTTLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYC 224 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + L I A ++ +V TK ++ E L G + L+ D++ E Sbjct: 225 LVDQRHKTEALGRMIEVEAGLD-AAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGE 283 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ DLR G DV+V ++ G+D+P ++ V DA + IGR R Sbjct: 284 RERVVADLRDGRLDVIVATDVAARGIDVPRITHVFNYDAP-----GDAEVYVHRIGRTGR 338 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G+AIL+ + M + I + ++QK + + + + + A Sbjct: 339 AGRKGRAILFLEPRKRRMLRDIERLTGKPVREQKVPDRAAVIARREERLAERLQAELAGE 398 Query: 604 AKTK 607 A + Sbjct: 399 ASPQ 402 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 113/356 (31%), Gaps = 20/356 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + E + G P L +VV I + Sbjct: 144 TRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGTPGRVIDHLEK 203 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G + L E L K E + Q SAT N + + + Sbjct: 204 GSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPNSIRKIAQQYL 263 Query: 409 VDQ------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D T ++ + + D ++ + + + ++V TK+ E++ Sbjct: 264 NDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENYDG-IIVFVRTKKETEEV 322 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L+ G ++ DI R + LR G D+LV ++ GLD+ +SLV D Sbjct: 323 ADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVERISLVVNYD 382 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S + IGR R G AIL+ M + I + R++ + Sbjct: 383 IPHD-----TESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQKVEPMHMPTA 437 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 + + I +++ R I+E D + + + + Sbjct: 438 EAVNETRKQRFAQQITETI------ESEDLSFFRQIIEDYENEHDTTAEDIAAALA 487 >UniRef50_C5KW96 Helicase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KW96_9ALVE Length = 393 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 14/251 (5%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVATQVDDLLS 437 + SAT + + + D + G + + + L Sbjct: 80 PFDQASTMFSATFPKEIQQLARDFLHDYIFLTVGRVGSTHSSIRQVLRYVEDSDKYRDLR 139 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + L+ TKR A++L L +H D +ER E +R+ + G Sbjct: 140 RLLEEQSEEGLTLIFVETKRRADELEHVLCRDRYPATSIHGDRSQMEREEALREFKSGVR 199 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+ V+ V D + + IGR R N G A + ++ Sbjct: 200 PILVATDVAARGLDISHVNHVINYDLP-----HNIDDYVHRIGRTGRVGNLGTATSFVNE 254 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 ++ + + E+ + + +N A G+ K ++G Sbjct: 255 SGRAILRDLWALLEENEQ--EVPSWFLSLMRDVNSARETRFASGKGRYKGSSRGASFGSR 312 Query: 617 IVEPDNVPMDM 627 V + +D Sbjct: 313 DVRQYSSGVDF 323 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 87/295 (29%), Gaps = 33/295 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M + Sbjct: 133 TPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIA---------------- 176 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 QT+ SAT + + + D V + + P + + Sbjct: 177 -KLPQQKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPE 235 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L S +++ R +V TK LE+ G +V +H + R + + Sbjct: 236 LLASVLKREEVT--RAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFK 293 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VLV ++ GLD+ VS V D E + + IGR R +G AI Sbjct: 294 NGHIQVLVATDVAARGLDVTGVSHVINYDLPME-----PETYVHRIGRTGRAGKSGIAIS 348 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + D + + + ++ + + GI N K Sbjct: 349 FCDDEQRGLLRDVQRILGKKIPVENEMPD-GIPGLPANIDRDGGAKRAPWGNKKP 402 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/390 (16%), Positives = 117/390 (30%), Gaps = 20/390 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + + E G + G L +VV + I Sbjct: 86 TRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGTHIVVATPGRLLDHIER 145 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 L E L + + SAT + + + Sbjct: 146 RSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFSATMPKRVRDIANKHL 205 Query: 409 VDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLT 463 + + IE + L +++ E V+V T T+ + Sbjct: 206 SNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTEGVIVFTRTRESTTVIA 265 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L + G + L+ D+D R+ + DL+ G DVLV ++ GLD+ ++ V D Sbjct: 266 EQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAARGLDVERITHVINYDV 325 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + E + + IGR R GKAIL+ M + I R+ + K Sbjct: 326 PFD-----EEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQSIPEIKLPSVL 380 Query: 583 GITPQG-------LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 I + + + D + R I + + K Sbjct: 381 AIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAVALAGMLHSPGASKGPK 440 Query: 636 IHELEGLMMQHAQNLEFEEAAQI-RDQLHQ 664 + E ++ E++++ R + Q Sbjct: 441 HAKGEKHTPYGTRDARDEKSSKPNRKERRQ 470 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 94/283 (33%), Gaps = 14/283 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+P L +VV I + K ++ E L + Sbjct: 113 YGGQPYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDD 172 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVAT- 430 + Q SAT + + D V T I + + Sbjct: 173 VEAVLKKLPAKRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSG 232 Query: 431 -QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 D L+ I + + +++ TK E+L L+ G ++ D+ +R I Sbjct: 233 MHKLDALTRILEVEPFD-AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTI 291 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 L+ G+ D+LV ++ GLD+ +S V D S + IGR R G Sbjct: 292 AMLKEGKLDILVATDVAARGLDVERISHVLNYDIP-----YDTESYVHRIGRTGRAGRSG 346 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 +AIL+ M + I R+ ++ + + +NK Sbjct: 347 EAILFATPREKGMLRQIERATRQPIEEMQLPSVEAVNDNRINK 389 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 33/324 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + + M L + Sbjct: 134 TPGRLLDHLEQKSINLSQVEVLVLDEADRM-----------------LDMGFIPDIKRIL 176 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-----VRPVATQVDDL 435 Q++ SAT + + + + + + + E V PV++ + Sbjct: 177 ALLPKQRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRN 236 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L R + + LV TK M L YLE G +H D +R + + + G Sbjct: 237 LLAHLLRHKPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSG 296 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + VLV ++ GLD+ E+ V + + + IGR R +G AI Sbjct: 297 KLRVLVATDVAARGLDIDELPFVINFELP-----HTAEDYVHRIGRTGRAGHHGYAISLV 351 Query: 555 DKITPSMAKAIGETERRREKQQKYN-----EEHGITPQGLNKKVVDILALGQNIAKTKAK 609 I + + + Q++ + ++ A A+ A Sbjct: 352 SSEEKHWLSEIEKLIKLQIPQERVPGFDPDPDFHEAGSRGHRGRRPAAAAADTEAQAPAA 411 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQ 633 G VE + + Sbjct: 412 RSGGRERGVERSAEARREPARERE 435 >UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Anaplasma RepID=Q5PBQ9_ANAMM Length = 1152 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 68/448 (15%), Positives = 140/448 (31%), Gaps = 52/448 (11%) Query: 36 TLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 + GV +A + + + + + T A L +K F E V Sbjct: 36 VITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVF------- 88 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDP-D 152 +P D+ K S + + R+ + + V++ + A+ P Sbjct: 89 ------ILPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAH 142 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 + + G + A+++ L Y ++ + G+F VRGE++DIF D+ Sbjct: 143 SVASAAITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQPI-DNKPT 201 Query: 213 RVELFDEEVERLSLFDPLTGQIV-STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R++ + VE + FD T +P IYP + + E + + ++ Sbjct: 202 RIDFCYDAVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRYMQQYPNPD 261 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E M C G E + L + T+FDY+P Sbjct: 262 PAF-------------------AEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVPN 298 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 L++ + ++ G + E SAL + + + I+ Sbjct: 299 AKLVL---AEQASEEVLRRLEGAQE--EDYTAQSATGKSALFLDLQGYIQITRSFHKAIF 353 Query: 392 VSATPGNY-ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + L + + ++ Q D+ + + L Sbjct: 354 CRFDATSENNLWEHQQVICSSSNIGAVPNFRLLAQ----EQKADVFAVAADYINSAHKTL 409 Query: 451 VT-TLTKRMAEDLTEYLEEHGERVRYLH 477 + ++ + + HG + +H Sbjct: 410 ILACYSEGSLLYFIDKFKAHGIHISRVH 437 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 21/264 (7%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQR 442 + +SATP L S + + V T + +++ + + + + I Sbjct: 758 RNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNIIKTAILDE 817 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + RV T + + L++ +V H T +I+ D G+F VL Sbjct: 818 VSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVAHGRTSTRALDKIMNDFFDGKFSVL 877 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ G+D+P + + + +AD G + L Q GR R+ Y I Sbjct: 878 LTTSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRS---TLKGYAYFIVSK 930 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A +R E + N G + D+ G + + Sbjct: 931 KALPDSPGMKRLEAVRSLNS----VGSGFALALQDMDMRGFGNLVGEEQSGN-------I 979 Query: 621 DNVPMDMSPKALQQKIHELEGLMM 644 V +++ K L++ I + Sbjct: 980 KEVGIELYHKMLEEAIAACQEQPH 1003 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 90/287 (31%), Gaps = 15/287 (5%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPS 370 + G+ L ++V + I D L E L Sbjct: 143 HVLPVYGGQSMVVQLRQLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRM 202 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPII 423 + + QT SAT + + + + Sbjct: 203 GFIDDVEWILQHTPAERQTALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRY 262 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 VA ++D L + I + + ++ TK +L + LE G L+ D+ Sbjct: 263 CQISVAHKLDAL-TRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQ 321 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R +I L+ G+ D++V ++ GLD+ +S V D + + IGR Sbjct: 322 LRERVIEQLKGGQLDIVVATDVAARGLDVSRISHVINYDIP-----YDTEAYVHRIGRTG 376 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 R G AIL+ M K I R+ + + + + + Sbjct: 377 RAGRTGSAILFVAPREMRMLKVIERATRQPIEALQLPSREAVADKRV 423 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 104/331 (31%), Gaps = 15/331 (4%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L A G +VV I R L E L K + Sbjct: 117 LRAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT------QVDDLLSEIRQ 441 QT SAT + S + + V ++ + D+L + + Sbjct: 177 QTALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLE 236 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + + +V TK + L L + G V+ LH D+ +R ++ + G +LV Sbjct: 237 SEKPD-QAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILV 295 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ V+ V D S + IGR R +G+AI + D Sbjct: 296 ATDVAARGLDISSVTHVVNFDVP-----TSPDVYVHRIGRTGRVGRSGRAITFYDSKQKR 350 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKTKAKGRGKSRPIVE 619 +AI R + K + +A G +V Sbjct: 351 DIEAIERHTRTPMAPWTAGARVAALRVEVKPKRHESKPHDAAPTNGDRAATDGARTRLVV 410 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + PK L I GL + +N+ Sbjct: 411 AGGLAQGIEPKDLIHAITSAAGLDGESVRNI 441 >UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=Viridiplantae RepID=RH21_ARATH Length = 733 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 89/255 (34%), Gaps = 11/255 (4%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L ++ ++V + + M + V + + Sbjct: 446 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEEL 505 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDLL 436 + + + T SAT + + + VV G D I + + + + Sbjct: 506 DEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFF 565 Query: 437 SEIRQRAAINERV-LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + E+ +V TK+ + + + L++ G RV LH +R + R Sbjct: 566 RLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAK 625 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 ++VLV +++ G+D+P+V+ V D K IGR R +G A + Sbjct: 626 RYNVLVATDVVGRGIDIPDVAHVINYDMPKH-----IEMYTHRIGRTGRAGKSGVATSFL 680 Query: 555 DKITPSMAKAIGETE 569 + + + Sbjct: 681 TLHDTEVFYDLKQML 695 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 113/348 (32%), Gaps = 12/348 (3%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + E K ++ L + L++ +E+ G + ++ G+P L Sbjct: 62 EAIDEKEKSVQAIILAPTRELALQVADEIKSLRGRKR--VYVYAVYGGQPIGPQIRALER 119 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + I + + L E L + + + Sbjct: 120 GTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVL 179 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE 447 SAT L + + D V + + +E + S +++ + + Sbjct: 180 MFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILSDDF 239 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V TKR +L+E L + G L+ D+ R + +LV ++ Sbjct: 240 YGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVAA 299 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 GLD+ ++S + + + IGR R GKA+ + + I Sbjct: 300 RGLDVQDISHIVNYSLPM-----TAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIA 354 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 ++ + +EE K+ +N + ++G + Sbjct: 355 SVAGVDIQKSELSEELPREYHERYKREERPQRYRKNGRRDYSRGYSRR 402 >UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4DBF7_TRYCR Length = 622 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 97/305 (31%), Gaps = 33/305 (10%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 E +++ +R G G + + P L D L ++ + Sbjct: 161 EETRKVLRRIPTIATTCLYGGAPKGPQIRTLRAGVHVAIATPGRLIDLLEMRATNLLRVT 220 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 ++ + + M + K QT+ SAT Sbjct: 221 YLVLDEADRMLDMGFEIQIR-----------------KICSQIRSDRQTLMFSATWPQEI 263 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVLVTT 453 + D + G D + + L EI Q+ +RVL+ Sbjct: 264 RNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLEEILQKLGR-QRVLIFV 322 Query: 454 LTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR A+ L L G V +H D + +R ++ R + VLV ++ GLD+ Sbjct: 323 KTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDRSVLVATDVAARGLDI 382 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM-AKAIGETER 570 + +V D + + IGR R G A + PS + + + R Sbjct: 383 KNLDVVINFDMP-----TNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSKTIRDLVDLLR 437 Query: 571 RREKQ 575 R ++ Sbjct: 438 RANQE 442 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 89/295 (30%), Gaps = 28/295 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ + ++ + + M + + Sbjct: 129 TPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILR---------------- 172 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDL 435 QT++ SAT + + V V PV+ ++ Sbjct: 173 HLPNRKRQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSA 232 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + LV T TK A L L G + +H + +R + + + G Sbjct: 233 LLVALLKRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDG 292 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYG 554 + VLV ++ G+D+ + V D + I +GR AR G+A + Sbjct: 293 SYQVLVATDIAARGIDVEALGHVVNFDVPV-----AAEDYIHRVGRTARAEATGEAFTFV 347 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 K I +R + + + K V I I K KA+ Sbjct: 348 SPEEEGELKLIERAIKRALPRVTVP-DFDYHAKPTQKLEVPIAERIAEIRKKKAE 401 >UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=root RepID=IF4A3_HUMAN Length = 411 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 72/459 (15%), Positives = 141/459 (30%), Gaps = 80/459 (17%) Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIID----------QRAILRRLAELQYARNDQAFQ 189 S SA L + K + +D + +LR + + + Q Sbjct: 9 TSGSARKRLLKEEDMTK--VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 R ++ ++ + + F+I Sbjct: 67 R---AIK-----------------------QIIKGRDVIAQSQSGTGKTATFSI------ 94 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + +++E A E +++ L +++ +G + E+ Sbjct: 95 ----SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 150 Query: 310 SRF-LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + P +FD + L + + + M + V Sbjct: 151 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR---- 206 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---- 424 + A Q + +SAT + LE + + D + + +E Sbjct: 207 -------------YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQ 253 Query: 425 ---VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 D L ++ I + V+ TKR + LTE + E V +H D+ Sbjct: 254 FFVAVEREEWKFDTLCDLYDTLTITQAVI-FCNTKRKVDWLTEKMREANFTVSSMHGDMP 312 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER I+++ R G VL+ ++ GLD+P+VSL+ D + I IGR Sbjct: 313 QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP-----NNRELYIHRIGR 367 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + R G AI + + + I + + + N Sbjct: 368 SGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 59/347 (17%), Positives = 108/347 (31%), Gaps = 17/347 (4%) Query: 299 ELGYCSGIENYSRFLSGR----GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRG 353 + + Y R+L R G L ++V + + Sbjct: 144 AIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRRGADILVATPGRLLDFMGQDLVDL 203 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E L + E QT+ SAT + + + D V Sbjct: 204 SSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMFSATMEKEVRQLADRMLKDPVQ 263 Query: 414 RPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEE 468 + +E + + + +D I E +V T TK A+ L+ L+ Sbjct: 264 VQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVESAIVFTRTKHGADKLSRELKR 323 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +H D +R + + + G+ V+V ++ GLD+P++S V D +E Sbjct: 324 RGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAARGLDIPKLSHVFNYDVPEE-- 381 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + I IGR R G++ + + A+ E E EK + P Sbjct: 382 ---AGAYIHRIGRTGRA--GESGIAITLCCEAELDALREVEELLEKPIPELQTQWSLPLE 436 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + ++ G+ + +QK Sbjct: 437 RKARKGKGGRTRHGRSGYRSGGQKNAGKSGHKTGSRNRQGHADRRQK 483 >UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791B2B Length = 645 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 31/270 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + M V +PS Sbjct: 355 TPGRLIDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLTNSTMPSIESR------ 408 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL--------DPIIEVRPVATQ 431 QTI SAT + + + D + G + +IEV + Sbjct: 409 -------QTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKF--K 459 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L +I + + +V K++A+ YL E +H + ER + +RD Sbjct: 460 KKNALLDIIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRD 519 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + +LV + GLD+ V+ V D ++ + IGR R GKA Sbjct: 520 FKTNRMKILVATAVAARGLDIKGVNYVVNFDLP-----KTIDEYVHRIGRTGRLGNAGKA 574 Query: 551 ILYGDKI-TPSMAKAIGETERRREKQQKYN 579 I + D +A + + ++ +++ Sbjct: 575 ISFFDPESDGPLAAELIKILKQADQEVPSF 604 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 106/332 (31%), Gaps = 16/332 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G+ L +VV + I R L E L + Sbjct: 109 YGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDD 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPV 428 QT SAT + + D +D Sbjct: 169 VETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHG 228 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + LL + + ++ TK D+TE LE++G R L+ D+ R + Sbjct: 229 VRKNEALLRFL--EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQT 286 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + LR G D++V ++ G+D+ +SLV D + S + IGR R Sbjct: 287 LDRLRNGSLDIVVATDVAARGIDIERISLVVNYDIPLD-----AESYVHRIGRTGRAGRS 341 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G+A+L+ + + + I ++ + + + K V I ++ + Sbjct: 342 GRALLFVEPRERRLLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQ 401 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + + D + + L Q +L Sbjct: 402 YRSLLEDLFTADQDQENIAAAMLMLLQGKQKL 433 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 91/269 (33%), Gaps = 30/269 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + + M K Sbjct: 136 TPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIR-----------------KII 178 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 + Q ++ SAT + + +V+ + + +E + + Sbjct: 179 SYLPKRRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKN 238 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + + ++ ++ T TK A ++E L + G + +H + R + D R Sbjct: 239 LLLHLFKDKNF-KKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRS 297 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ LV +L G+D+ +++ V + + + IGR AR NG AI Sbjct: 298 GKNRALVATDLAARGIDIDDITHVINYEIP-----YVPETYVHRIGRTARAGKNGIAIAI 352 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEH 582 + S+ K I + + + H Sbjct: 353 AEADERSLIKDIEKVIGISIPVDRDHPYH 381 >UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Poaceae RepID=RH9_ORYSJ Length = 628 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 99/324 (30%), Gaps = 21/324 (6%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 R K L + ++ E S +E G P L Sbjct: 162 RHNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVET-----ICVYGGTPISQQIRQL 216 Query: 330 PADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +V+ I + R L E L D + Q Sbjct: 217 NYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQ 276 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVATQVDDLLSEIR 440 T+ SAT + + + + V G D + + +L E+ Sbjct: 277 TLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELI 336 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + A + +V T TKR A+ L+ + + + LH DI +R ++ R G F++L Sbjct: 337 KEHAKGGKCIVFTQTKRDADRLSYTM-GRSFQCQALHGDITQAQRERTLKGFREGHFNIL 395 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P V LV S + GR R GKAI+ Sbjct: 396 IATDVAARGLDIPNVDLVI-----HFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQS 450 Query: 560 SMAKAIGETERRREKQQKYNEEHG 583 + + + + G Sbjct: 451 RAIRMVENDVGCKFTELPKINVEG 474 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 59/381 (15%), Positives = 123/381 (32%), Gaps = 15/381 (3%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + + L+ L + +++ EL S L G+P L Sbjct: 64 ENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVL-PVYGGQPIDRQIKALQK 122 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +++ + I + + L E L E Q + Sbjct: 123 GVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFL 182 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE 447 SAT L+ + + + + P +E + + D L + + +++ Sbjct: 183 LFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHD 242 Query: 448 --RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 LV TKR + L +L+ G LH D+ +R ++ + G ++LV ++ Sbjct: 243 FDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDV 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 G+D+ V V D + + IGR R GKA + + Sbjct: 303 AARGIDVGGVEAVFNFDIPNDN-----EYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRD 357 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I + + +Q + + + ++ +K + +VE D Sbjct: 358 IQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIE--KLVEEDYNS 415 Query: 625 MDMSPKALQQKIHELEGLMMQ 645 +D++ L+ I + + Sbjct: 416 IDIAATLLKGVIDDKRYKEEE 436 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 99/303 (32%), Gaps = 32/303 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + M V Sbjct: 131 TPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVA---------------- 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEV------RPVATQVD 433 Q ++ SAT + + + + V IE R + Sbjct: 175 -MLPQDRQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKG 233 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL E+ ++VLV TK A+ + LE+ G + +H + R E + + + Sbjct: 234 ALLKELLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFK 293 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 + VLV ++ G+D+ +VS V D E + + IGR AR G AI Sbjct: 294 CEQIRVLVATDIAARGIDVDDVSHVFNYDLPNE-----HETFVHRIGRTARAGKEGVAIS 348 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + S + I + R + + + + P K+ + + ++ + + Sbjct: 349 FCSPDEESDLRGIEKLTRVKIPEGDQSIYENLPPP--QKETAESMMRNSRGRMSREEAQA 406 Query: 613 KSR 615 ++ Sbjct: 407 RAA 409 >UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=rosids RepID=RH5_ARATH Length = 537 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 99/287 (34%), Gaps = 35/287 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + ++ L + D S V + + M L + Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRM-----------------LDMGFEEPVRFIL 290 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLD--------PIIEVRPVATQ 431 Q + SAT + + + + + G +D IIEV + Sbjct: 291 SNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERAR 350 Query: 432 VDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 L++ + + + RVLV L K AE L +L++ G + +H + ER + Sbjct: 351 DQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLS 410 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 + G +LV ++ GLD+P+V +V F + + IGR R G Sbjct: 411 LFKEGSCPLLVATDVAARGLDIPDVEVVINY-----TFPLTTEDYVHRIGRTGRAGKKGV 465 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 A + + +A + RE Q + + KK + Sbjct: 466 AHTFFTPLNKGLAGELVNVL--REAGQVVPADLLKFGTHVKKKESKL 510 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 95/259 (36%), Gaps = 18/259 (6%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M + + + + + L F Sbjct: 151 TPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEI----VDAIPAERQTLLFS 206 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + + S +E + V L+D + + L S +R Sbjct: 207 ATIDRSQDKVMFSLLKDPEIIEIAHRGDV------ADLIDQYVIKTDRRLKPALLNSFVR 260 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +R RV+V T TK A++ T+ L + G +H+D +R + + R G+ VL Sbjct: 261 ERG--GFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVL 318 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++L G+D+PEV V D + IGR R G A+ + T Sbjct: 319 VATDVLSRGIDVPEVDYVINYDLPMM-----PEDYVHRIGRTGRAGARGYAVSFVTPDTR 373 Query: 560 SMAKAIGETERRREKQQKY 578 ++ K+I + + + + Sbjct: 374 NLLKSIQKFIDQTIEVLDF 392 >UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Chlorobiaceae RepID=A1BEU9_CHLPD Length = 1127 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 121/401 (30%), Gaps = 37/401 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P + + ++ A Q + Sbjct: 572 HPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTTILAHQHGESFTRRFENFPIS 631 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 LS + + + + A + +V +H + + + Sbjct: 632 ------IAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDVLFKDLGLLVIDEEQH 685 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + L + + + +SATP L+ S D + T + Sbjct: 686 FGVEVKEKLRDSFPGVDS--------LTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQP 737 Query: 424 EVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + ++ S IR + +V E++ + L + R + H + Sbjct: 738 VETILTGYDPTIIQSAIRHELQRDGQVFFLHNRISGLEEVQQTLRDLVPYARIVIAHGQM 797 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + E +++ D E DVL+ +++ GLD+ + + I AD G L Q G Sbjct: 798 PSKELEKVMMDFMQKEIDVLISTSIISSGLDISNANTIIINRADMFGLS----DLYQLRG 853 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ ITP + ++ ++ E G + D+ G Sbjct: 854 RVGRSER---KASCYMITPP----LNTLKKEAVQRLAVIESFTELGSGFTIALRDLDIRG 906 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N+ + G + D+ K L++ + EL+ Sbjct: 907 AGNLLGAEQSGF--------IHELGFDLYQKMLEETVAELK 939 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 39/243 (16%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLA------HQTLLGVTGSGKTFTIANVIADLQRPTMV 62 S Q A L++ +E+ ++ + G+ GS + + ++ P +V Sbjct: 42 SMLFRELQQSGAYIHLKKRIEESISSTGALIPVEVTGLKGSLSSVLACTLFSESDCPVLV 101 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 ++ +T + ++ P V F SD Sbjct: 102 VS-GQTSFEKYENDLGGLLPHAPVHTF---------------SDELPL------------ 133 Query: 123 RLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 A A++++++ ++++S + L P L+ + L V +L LAE + Sbjct: 134 ---ALVALVQKKNPLILSSFDDLLLPLSSPSEALEKLFTLAVEKEAGYEKLLSFLAENGF 190 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 + G F VRG ++D+F + + LR+E F V L FD + T+ Sbjct: 191 EPREFVEDEGEFSVRGSIVDVFSFGA-KVPLRIEFFGNTVSSLRTFDINSQLSQKTLTAA 249 Query: 242 TIY 244 + Sbjct: 250 ELT 252 >UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 n=1 Tax=Hydra magnipapillata RepID=UPI000192615D Length = 745 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 97/282 (34%), Gaps = 36/282 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L V +++ + + M + + R Sbjct: 402 TPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRP------------ 449 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QTI SAT + + D + G LD ++E + Sbjct: 450 -----DRQTIMTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQ 504 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIR 490 D ++ I A + ++++ K A+D++ L G ++ +H D D +R + + Sbjct: 505 DRVMDFI-SAMAPDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALE 563 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 D++ G VL+ ++ GLD+ +++ V D F R + IGR R G Sbjct: 564 DMKTGAARVLIATDVASRGLDIKDLTHVLNYD-----FPRHIEDYVHRIGRTGRAGRSGC 618 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 A+ + + + E Q+ EE + K Sbjct: 619 ALTFVTREDWMHVAKLIPIME--EAGQEVPEELIEMAERWKK 658 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 33/345 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPS 370 F++ G+P L +VV + I + L E Sbjct: 101 FVATVYGGQPMLPQLKALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNM 160 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRP 427 + E +T+ SAT + + + D V P+ E+ Sbjct: 161 GFLEEVSEIMENAGEDRRTLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIF 220 Query: 428 VATQVDDLLSEIRQRAAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 D + + LV T+ A+ + L E G +H D+ R Sbjct: 221 HEVNERDRFEALCRVVDAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARR 280 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 +I+ R +LV ++ G+D+P++S V + +S + +GR R Sbjct: 281 EDILMRFRKRRCKILVATDVAARGIDVPDLSHVVN-----FALPQDPQSFVHRVGRTGRA 335 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G A+ + I + + R ++ + ++ Sbjct: 336 GKKGVAVTLITPREFGKLRYITKITKLRVDKKPLPTIDQVI----------------DVK 379 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQ-----QKIHELEGLMM 644 K++ +D++ + L+ + + L Sbjct: 380 KSRMGAELSEIVEAGKHLSYLDLAHELLEGVDPIEAVAALLKHSQ 424 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 98/312 (31%), Gaps = 33/312 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ LL+ + I + M L + Sbjct: 192 TPGRLLDHVERGRLLLSGIEVLVIDEADRM-----------------LDMGFIPDIERIC 234 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQV 432 + QT++ SAT + + V T + ++ + Sbjct: 235 KLVPFTRQTLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEK 294 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L E+ + A + +V KR + L++HG V LH D+D R + + Sbjct: 295 RETLRELIRNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQF 354 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R GE +LV ++ GLD+P VS V D + IGR R G AI Sbjct: 355 RTGEATLLVASDVAARGLDIPAVSHVFNYDVP-----HHSEDYVHRIGRTGRAGRTGTAI 409 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + AI + Q E G P + + + K Sbjct: 410 MLVTHDDAKSLAAIEKLIGNAIPWQ--GEPLGEAPPREKRSRGGDRREERGERSERNKRS 467 Query: 612 GKSRPIVEPDNV 623 G+ R + + Sbjct: 468 GRGRSERKAEVE 479 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 112/382 (29%), Gaps = 26/382 (6%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E + L + L++ +E+ + ++ G L Sbjct: 82 REPREKPRALVLVPTRELALQVASEIESFKEGTH--PRITTVYGGASIVEQLRNLKRGCE 139 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +V I + D L E L + + + S Sbjct: 140 IVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVLMFS 199 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINERV- 449 AT L+ + + + + + P+ E + +D + + E Sbjct: 200 ATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAENFY 259 Query: 450 -LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 LV TK A+ + + L+E LH DI +R +I+ R G+ +LV ++ Sbjct: 260 GLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAAR 319 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ ++ V +G + IGR R G A+ + + Sbjct: 320 GIDIEGITHVVNYSIPYDG-----PTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRR 374 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 R G +G + +LA Q+ + + + + N Sbjct: 375 HAR------------GELLEGKIPSIEKVLAQKQDRLFSDLRRQLDTVQAEHTVNKSFIE 422 Query: 628 SPKALQQKIHELEGLMMQHAQN 649 + L + A + Sbjct: 423 LARELLAGNKASLAATEETAAD 444 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 59/384 (15%), Positives = 120/384 (31%), Gaps = 20/384 (5%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE--LGYCSGIENYSRFLSGRGPGEPPP 323 L ++ + + + T+ + + + ++ + G + Sbjct: 61 NLVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQN 120 Query: 324 TLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L L ++ +V + + + E L K E Sbjct: 121 KL---LKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFES 177 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDL 435 + Q + +AT + + + D + I Q + Sbjct: 178 TSQDQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLV 237 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L ++ A +N + ++ T TKR A+ L++ L R + LH D+ ER I + Sbjct: 238 LVDVLNEADLN-QAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNN 296 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 E +LV ++ G+D+ +++ V D R I IGR R GKAI Sbjct: 297 EIQILVATDVAARGIDVDDITHVINFDLP-----RQVEDYIHRIGRTGRAERKGKAISLV 351 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 M + I + + + K KK ++ K + S Sbjct: 352 IDKEKFMLQKIEKYANIKIEVIKSTHSTSDLSLVYKKKESGFKKKRRSSGSRKKNDKFTS 411 Query: 615 RPIVEPDNVPMDMSPKALQQKIHE 638 + D+ K+ ++ + + Sbjct: 412 SSKRKKHGFKADVKAKSRRRPVKK 435 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 89/289 (30%), Gaps = 32/289 (11%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + + + + + M L Sbjct: 122 PHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQM-----------------LHMGFLP 164 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP 427 + A QT+ SAT + + + V + ++ Sbjct: 165 EVQNIVDQTPRARQTMLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETT 224 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L+S I ++ TK A+ L + L++ G LH D+ +R + Sbjct: 225 DRGRQKALISMI--ETQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQ 282 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 +++ R + +LV ++ GLD+ V+ V D + I IGR R Sbjct: 283 VMKRFRDAKLQILVATDVAARGLDVEGVTHVFNFDVPTD-----SEIYIHRIGRTGRAGQ 337 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G AI + I + +++ + I + + Sbjct: 338 RGTAITIASPYDRAAVAHIERSINAILERRTIEADGTIVKNTAPRSSSE 386 >UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2UZP5_NAEGR Length = 483 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 69/385 (17%), Positives = 124/385 (32%), Gaps = 37/385 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEEL----AARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 P + P + + E E + K + KL + + + + Sbjct: 118 PLGLILCPNRELAKQTFEFIEYFFNGINEQEKKRSQTFKLNVSLCMGGIKEERIFNQSNS 177 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 N S P L L + + + D +V + + + Sbjct: 178 NSRYYSSNSSGGGYIHIVVATPGRLIQMLNENKIQLNDCKYVCMDEADRLIDLGFEEDIK 237 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-- 418 + + Q ++ SAT + + ++ G Sbjct: 238 TI--------------FQHLNLNNNHIQKVFFSATMPEKIQNLAMNTLNQPIIVNVGRAG 283 Query: 419 ---LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 LD I EV V + D ++ ++ VL+ + K + + EYL G Sbjct: 284 AVNLDVIQEVEYVQEE-DKIVYLLQALQKTPPPVLIFSQNKSEVDTICEYLLLKGVEAVS 342 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +HS D ER I + G+ VLV +++ +G+D P V V D R + Sbjct: 343 IHSSKDQSEREYAIDSFKQGKKHVLVATDIVSKGIDFPNVKHVINFDMP-----REIENY 397 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + IGR R NGK L I + ++ I + K E + P + + + D Sbjct: 398 VHRIGRTGR--NGKTGLATTFINKNQSEQILLDLKYLLK-----EANQRIP-PILQSIYD 449 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEP 620 A +N+ +GRG + Sbjct: 450 PYAHLENVECKYCQGRGHRITECQK 474 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 102/325 (31%), Gaps = 31/325 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + S + + + M L Sbjct: 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEM-----------------LRMGFIEDVETIM 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLS 437 QT SAT + + + P I Sbjct: 175 AQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNE 234 Query: 438 EIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + A + ++ TK ++ E LE +G L+ D++ R + + L+ G Sbjct: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 D+L+ ++ GLD+ +SLV D + S + IGR R G+A+L+ Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMD-----SESYVHRIGRTGRAGRAGRALLFV 349 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + I T + + + + + L K + + + Sbjct: 350 ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQ---LESSDLDQYRAL 406 Query: 615 RPIVEPDNVPMDMSPKALQQKIHEL 639 ++P ++ + L + ++ Sbjct: 407 LSKIQPTAEGEELDLETLAAALLKM 431 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 118/333 (35%), Gaps = 23/333 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+P + + L +VV I + + R L E L Sbjct: 109 YGGKPLRSQMEKLKRAPHIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPD 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPV---A 429 K QT+ +SAT + + + + PT + IE R Sbjct: 169 IEKILRRCPEERQTLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDH 228 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ D+L E+ +R ++ +V TKR E +T+ L + + V +H D+ R + Sbjct: 229 SKKFDMLVELLKR-EQPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRAL 287 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 D + +F VLV +++ G+D+ +VS + D + + +GR R G Sbjct: 288 SDFKASKFRVLVATDVVGRGIDISDVSHIINYDIPEF-----SDDYVHRVGRTGRMGKEG 342 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 A + TP + E R +K +E G P + G A T Sbjct: 343 IAYTFV---TPEEGNELTRIEVRIDKLLIRDELPGFAPYE-----RTDVDTGPGPAATAI 394 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G+ + + P PK+L+ + Sbjct: 395 GPDGQKEVGMVTEE-PKAEPPKSLKSRAKRYRK 426 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 13/269 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 G+ L LVV G R + L E L + Sbjct: 151 GKNMNRQLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIE 210 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVD 433 + QT+ +SAT + + + VV +D I + Q D Sbjct: 211 RIMRKCPRNRQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDD 270 Query: 434 DL-LSEIRQRAAINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRD 491 + L E + E+ ++ TKR + L L E+G +H D+ ER +++ Sbjct: 271 KVRLLESLLKREKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQK 330 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 LR G LV +++ G+D+ +S + D + + +GR R +G A Sbjct: 331 LRDGNLKFLVATDVVGRGIDISTISHIVNFDVP-----QDCDDYVHRVGRTGRMGRDGVA 385 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYN 579 + + +I + + + K + Sbjct: 386 YTFVVPGEGDILTSIEQRINKLLIRDKMD 414 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 30/261 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + D + + + M L + Sbjct: 143 TPGRLLDLVNQGFIDLKDVEILVLDEADHM-----------------LDMGFLPDVKRIL 185 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVDD 434 +F Q + SAT + + +VD V P +E Sbjct: 186 KFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQADKPR 245 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL+ + A LV T TK A+ + L + G + +H + R+ + + Sbjct: 246 LLNHFIETKATG-STLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKFKN 304 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 E DVLV ++ G+D+ + V D + + + IGR R G+ +++ Sbjct: 305 DELDVLVATDVAARGIDIDGIQTVINYDTP-----NTPEAYVHRIGRTGRAGREGETVMF 359 Query: 554 GDKITPSMAKAIGETERRREK 574 AI + + Sbjct: 360 CGGHETKFFIAIEREIKLQIP 380 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 83/264 (31%), Gaps = 12/264 (4%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + I G + D+ + L E L + Sbjct: 170 LRRGARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDR 229 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ--R 442 QT+ SAT + + + + I IE R D ++ I + Sbjct: 230 QTMLFSATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFE 289 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 E L+ T+ +L L G L D+ R ++ + G+ VLV Sbjct: 290 VETVESALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVA 349 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+ ++S V D + IGR R G AI M Sbjct: 350 TDVAARGLDIDDISHVFNYDLP-----EDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWM 404 Query: 562 AKAIGETERRREKQQKYNEEHGIT 585 + I + ++ + + I Sbjct: 405 HRRIEQYTGKKLIKGELPTVEQIE 428 >UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Acidaminococcus RepID=D2RII4_ACIFE Length = 417 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 102/336 (30%), Gaps = 35/336 (10%) Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G E + P L D+L + ++ + ++ M R Sbjct: 106 SGGRDFEEEKRKIGHRAQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGED 165 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + QT+ SAT + + +V Sbjct: 166 IETLL-----------------SLMPQPHQTMMCSATLDEEVRKLGRQLTTNPLVIDIAP 208 Query: 419 LD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + I + D L S IR+ +LV +K A +L+++L G Sbjct: 209 KESTASTIHQICIKVSEDHKADALASLIRRY--NPFLMLVFCCSKERAIELSDWLYGEGF 266 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 V LH D+ +R +++ + R + +LV ++ GLD+ ++ V D + Sbjct: 267 NVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIAARGLDVEGITQVVNYDIPHD----- 321 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + IGR R G AI + T + + E++ + + G T + Sbjct: 322 PDWYVHRIGRTGRAGSEGTAITFY---TADETRWLQNLEKKLDITLERQNLAGETVRRTV 378 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 K V K+ + E Sbjct: 379 KPVRPKKKRVPKRGKSAVGPNKRGTKYAEASRKQKR 414 >UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bacteroidetes RepID=D1PXI7_9BACT Length = 1210 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 60/406 (14%), Positives = 123/406 (30%), Gaps = 31/406 (7%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + Q A +L E + + + L G+ S ++ L P + + + A Sbjct: 9 LYATLPQCGAFVKLLE--DKSVKNVFLQGLVASSAPLFFSSAAKRLNHPFVFILQDADEA 66 Query: 71 AQLYGEM--KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 Y ++ P + + + Y PSS K + E +R Sbjct: 67 GYFYNDLNLSSRTPSLTGKGDDRLRETHSSVYYFPSSYRRSVKYGQRDAANEILRTEVLS 126 Query: 129 AMLE-----------------------RRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVG 164 + + +V AI L + + L Sbjct: 127 KLSSLGTNNSLTDHHTSSAPPAEGERINEPLFIVTYPEAIAELVVSQTHLDERRISLKTA 186 Query: 165 MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERL 224 ID ++ RL EL + D ++ G F VRG +ID++ S ++ R++ F +E++ + Sbjct: 187 QSIDITDLVHRLRELGFEEKDYVYEPGQFAVRGSIIDVYS-FSSELPFRIDFFGDEIDTI 245 Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F I P T + ++ + ++ K + + ++E Sbjct: 246 RTFTVEDQLSKDRKSGVDIVP--ELATLVSAKIPFLQFLPDDTVLVAKDMEYVSGMIERI 303 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + L E E R ++ PP +++ + Sbjct: 304 YNEGFSAQALAERLEGATEMEQEQTRREMTKESMLCPPTRFAADAGKFKQVIMGDPSKIY 363 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + R + +G S + F + L Q++ Sbjct: 364 GRSESRGRDTASPSPMGEGWGGASISFHISPQPLFHKNFTLLRQSL 409 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 135/416 (32%), Gaps = 39/416 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + + + R P V + ++ A + Q Sbjct: 656 ATQDVKADMERAR--PMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAFQH 713 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 Q + + + +LS + + L + + ++ +H + + Sbjct: 714 FQTFRDRLRDFP------VRVDYLSRARSAGQTRQVLEDLESGKIDIIIGTHKLLGKNVK 767 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + ++G L TI +SATP L+ S Sbjct: 768 WHDLGLLIIDEEHKFGVSTKEKLRKL--------KTNVDTITMSATPIPRTLQFSLMGAR 819 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D + T + ++T +++++ I + N +V ++ +++ Sbjct: 820 DMSIMRTPPPNRYPIHTELSTFGHEVITDAINFEMSRNGQVFFVNNRISNLPEIANLIQK 879 Query: 469 H--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 H RV H + E +++ ++DVL+ ++ G+D+P + + I A + Sbjct: 880 HIPDCRVAIGHGKMSPEELEKVVMGFINYDYDVLLSTTIVENGIDIPNANTIIINGAHRF 939 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P + + RRR + + E G Sbjct: 940 GLS----DLHQMRGRVGRSNR---KAFCYLLAPPKS-VLTPEARRRLEALEAFSELG--- 988 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G N + D+ G N+ + G +++ + K L Q + EL Sbjct: 989 SGFNLAMQDLDIRGAGNLLGAEQSGF--------MEDLGYETYQKILTQAVTELRN 1036 >UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED Length = 1111 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 110/305 (36%), Gaps = 26/305 (8%) Query: 46 TFTIANV-IADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 +A + A RP + +A + ++ + PE V + P Sbjct: 29 ALAVALLGFAQAARPLIHVARDGRRLDEIAAVLLALAPERTVAVY-------------PE 75 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERR---DVVVVASVSAIYGLGDPDLYLKMMLHL 161 D AS + + R + + + R D+V+ + + + + P+ + + L Sbjct: 76 WDCLPFDRASPSRGVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPETWESAHIEL 135 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 VG +D + +LA L Y +D+ + G VRG ID+FPA + + RVE + Sbjct: 136 RVGEPLDAEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARI 194 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER--IVQAMEEIKEELAARRKVLLENNK 279 + +DP++ + R I P T + + ++ + LA L+ Sbjct: 195 TAIRSYDPVSQRSRVETERLVIDPATEIILDPDSGLALEPFTGQEHRLARFYPALVTMLD 254 Query: 280 LLEEQRL------TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + E RL +R E + E G + S + P P + Sbjct: 255 YVPEARLVVEAGVEERAAAFFEQIAEGREAEGAMSPSGSRRDDRSQQTPAPDLYLAPKEW 314 Query: 334 LLVVD 338 ++D Sbjct: 315 AKLLD 319 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 83/265 (31%), Gaps = 21/265 (7%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-LDPIIEVRPVATQVDDLLSEIRQR 442 A + +SATP L+ + + V T + I + L + +R+ Sbjct: 721 AGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAPFEESTLAAALRRE 780 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + V + + L G V H ++ E + + G DVL Sbjct: 781 HRRGGQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVL 840 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ GLD+P + + + DA++ G + + + + ++Y Sbjct: 841 LATSIIESGLDVPRANTMLVWDAERFGLAQ-----LHQLRGRVGRGQRRGVVYLF---GH 892 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K + + +R + E G D+ G + Sbjct: 893 PDKPLSHSTEKRLRTL---EALDRLGAGFAISARDLDLRGAGDLVGDDQSG-------HV 942 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQ 645 V + + LQ + +G + Sbjct: 943 KLVGLGLYQHLLQLALRAAKGEAAE 967 >UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Actinomycetales RepID=A4X1W4_SALTO Length = 621 Score = 168 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 16/269 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G + L ++V + + DR R L E L + Sbjct: 204 YGGVAYEPQIEALRTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDD 263 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K QT+ SAT + + S + V G + R Sbjct: 264 VEKILAMLPEERQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRT 323 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + ++++ I Q ++ T TKR A+ + L+ G V +H D+ R Sbjct: 324 HSLNKIEIVARILQAKGRG-LTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARER 382 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 +R R G+ D LV ++ G+D+ V+ V D + + IGR R Sbjct: 383 ALRAFRTGKIDTLVATDVAARGIDVSGVTHVLNYDCP-----EDQDTYTHRIGRTGRAGA 437 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQ 575 +G A+ + D + I +T + Sbjct: 438 SGVAVTFVDWDDMPRWRIIDKTLGLEMPE 466 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 113/367 (30%), Gaps = 42/367 (11%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + P + ER LA R+++ + + L++ + Sbjct: 68 QTGTGKTAAFGL-PLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSLR 126 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + G + P L D + + + ++ + + M Sbjct: 127 IN---VVVGGVSINKQQLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQML 183 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 K + QT+ SAT + +G +VD Sbjct: 184 DLGFVHDLR-----------------KIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDP 226 Query: 412 VVRPTGLL-----DPIIEVRPVATQVDDLLSEIRQR---AAINERVLVTTLTKRMAEDLT 463 V V VA + D +E+ ++ + R +V TK AE L Sbjct: 227 VKVEVTPPGKAADKVEQYVHFVAGKNDK--TELLRKSLTENPDGRAMVFLRTKHGAEKLM 284 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 ++LE G V +H + +R ++ R G L+ ++ G+D+P VS V D Sbjct: 285 KHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDL 344 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + IGR AR G AI + + + I R Sbjct: 345 P-----EVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDI-----ERLMGIDITVAS 394 Query: 583 GITPQGL 589 G P + Sbjct: 395 GEAPANI 401 >UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, putative n=2 Tax=Eukaryota RepID=A5K9H3_PLAVI Length = 1006 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 88/263 (33%), Gaps = 21/263 (7%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV--EYGFRLPSALDNRPLK 378 P + D L ++ ++V + + M + + + D+ Sbjct: 714 TPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTTNLKSEDDALAL 773 Query: 379 FEEFEALAPQTIY-----VSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVR---P 427 EE A A +Y SAT S + G IE + Sbjct: 774 QEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFT 833 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L EI + ++V K++A+ + + + + R LH R + Sbjct: 834 TEGKKKQKLQEILEEYEAP--IIVFVNQKKVADIIAKSISKMKFRAVALHGGKAQELREQ 891 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 + + G+FD+LV ++ G+D+ V LV D K+ S IGR R Sbjct: 892 TLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKD-----IESYTHRIGRTGRAGM 946 Query: 547 NGKAILYGDKITPSMAKAIGETE 569 G AI + + + + + Sbjct: 947 KGMAISFVTEQDSHLFYDLKQFL 969 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 105/310 (33%), Gaps = 17/310 (5%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 R +N K + + +++ +L +G + G + L Sbjct: 100 RVGKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGK--LGSRILTVYGGRAYEPQVEAL 157 Query: 330 PADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 ++V + + + + L E L + + Q Sbjct: 158 KQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQ 217 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV------DDLLSEIRQR 442 T+ SAT + S + D E P TQ D + + + Sbjct: 218 TMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRL 277 Query: 443 AAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + R ++ TKR + + E L+E G +H D+ +R + +R R G+ DVL Sbjct: 278 LQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVL 337 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ G+D+ +V+ V D + E++ + IGR R G A+ + + Sbjct: 338 VATDVAARGIDVDDVTHVVNYDCP-----QDEKAYVHRIGRTGRAGKTGVAVTFVEWEDL 392 Query: 560 SMAKAIGETE 569 + K I Sbjct: 393 TRWKVINNAL 402 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 109/368 (29%), Gaps = 16/368 (4%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + L+ ++ + T+ + E G + G G Sbjct: 59 MLQRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFG-GVGM 117 Query: 323 PTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 D L ++V + G + + L E L + K Sbjct: 118 GAQIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLA 177 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVDDL 435 Q++ SAT + E + G + D + + ++ ++ L Sbjct: 178 LVPKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKAL 237 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L+ I +VLV T TK A ++ E+L ++G LH + R + ++ + G Sbjct: 238 LTHIINEHNW-SQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDG 296 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 LV ++ G+D+ E+ V + + IGR R +G+A+ Sbjct: 297 TIRALVATDIAARGIDIDELPHVVNYEIP-----NVSEDYVHRIGRTGRAGNSGEAVSLV 351 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK-KVVDILALGQNIAKTKAKGRGK 613 + I ++ ++ + + G Sbjct: 352 CLDEEGFMQDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQA 411 Query: 614 SRPIVEPD 621 + + Sbjct: 412 AAKAARSE 419 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 107/316 (33%), Gaps = 27/316 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + M + + + + + + L F Sbjct: 134 TPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEI----VDATPSERQTLLFS 189 Query: 381 EFEALAPQTIYVSATPGNYELEKSGG----DVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + + S +E S D+VDQ + TG + LL Sbjct: 190 ATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRRE-----------KPALL 238 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + RV+V T TK A++ T L + G +H+D +R + R G+ Sbjct: 239 NAFIREKG-GFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGK 297 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 V+V ++L G+D+PEV V D + IGR R V G A+ + Sbjct: 298 THVIVATDVLARGIDVPEVDYVVNYDLPMM-----PEDYVHRIGRTGRAGVAGYAVSFVT 352 Query: 556 KITPSMAKAIGETERRREKQQKYNE-EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 T ++ ++I + + ++ E P G + + K + K GK Sbjct: 353 PDTKNLLRSIQKFIGEDIQVMEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKK 412 Query: 615 RPIVEPDNVPMDMSPK 630 D K Sbjct: 413 GGRKHDDRGGKKGGRK 428 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 40/287 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + D +H+ + + M + GF L A ++R + Sbjct: 126 TPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFID-----DIGFILDLAPEDRVMS-- 178 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVD 433 SAT L S + + +D V + Sbjct: 179 ----------LFSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFK 228 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ I+ + +V TK D+ ++L + + D+ R + + R Sbjct: 229 YLIDFIKPTK---GQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFR 285 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ D+LV ++ G+D+P V LV D E + IGR AR GKA+ Sbjct: 286 SGKADILVATDVASRGIDVPRVELVINYDVP-----NQEMAYFHRIGRTARAGAKGKAVT 340 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + + I ++Q K + G+ + D L Sbjct: 341 FVSYSSVGDWNLI-------KRQIKVPIKDLNEEMGIEIAIPDPLKR 380 >UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM56_9DELT Length = 1144 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 138/431 (32%), Gaps = 38/431 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q Q ++ M + Sbjct: 620 PMDRLVCGDVGFGKTEVAMRAAFRAVQDGKQVALLCPTTVLAEQHYQNFVQRMQDFAIN- 678 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 R LS P + + + ++ +H + Q + R + + Sbjct: 679 -----VRMLSRFVPRNRQKIILEGARKGEVDILIGTHRILSQDVILPRLSLMILDEEQRF 733 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G R L + + ++ATP L+ S + V T LD + Sbjct: 734 GVRHKEKLKQYRQNID--------VLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPV 785 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 E + D L +++ +V + E + EY+++ R H + Sbjct: 786 ESSIIERDRDFLRHALQRELDRQGQVFWVYNRVQGLESVMEYVQDLMPEARVDMAHGQMP 845 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + E D+LV ++ GLD P + + + A G + L Q GR Sbjct: 846 ERILEENMHRFWHHEIDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQ----LYQLRGR 901 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y I PS + +GE R+R + + G + D+ G Sbjct: 902 VGRSQEQ---AYAYFIVPS-VRELGEKSRKRMQII---LDMDYLGAGFQVAMEDLRLRGA 954 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQI 658 + + + V +D+ + +Q+++ +L+G +++LE A Sbjct: 955 GNILGEVQSG-------QIGKVGLDLFLEMMQEEVGKLKGDTSYGSRDLEINIGFSAYIP 1007 Query: 659 RDQLHQLRELF 669 D + E Sbjct: 1008 EDYIPDAAERL 1018 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 87/648 (13%), Positives = 182/648 (28%), Gaps = 102/648 (15%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT--LAAQLYGEMKEFFPENAVE 87 H + + + + + +VL PN QL E Sbjct: 16 RQSRHIHIHKAGPATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKF 75 Query: 88 YFVSYYDYYQPE-AYVPSSDTFIEKDASVNEHIEQMRLSA--TKAMLERRDVVVVASVSA 144 + S++ P + P+ R+ A M ++ V+ + S Sbjct: 76 WESSWFFLPSPGHSSRPAWG----------------RIWASMFGLMQQKGKAAVLTADSM 119 Query: 145 IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFP 204 + L PD+ + L L G + IL +L E Y R G RG+++DI+ Sbjct: 120 LNYLPPPDVVRDVFLLLMTGEETNPGDILDKLVEWGYVRVFMVTSPGEVSQRGDILDIYA 179 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 LR+E F +E + F+P++ + + + I P + + QA ++ Sbjct: 180 PGY-PHPLRLEFFGNHLESIRTFEPVSQRSIRQLEECLILPVSPSPMEDHLVKQARDKA- 237 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L + ++ E + LE + +E F P Sbjct: 238 DYLKSTGEISRELRQRLEFK---------------------LEEKDPFYPAGLFYSSPGE 276 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + ++LP D + ++ + + + E ++ Sbjct: 277 ISEFLPEDAHFFLVDTARL----RTSLEEEEWKLKQWAEAEGWPEKLFFQPEVRARTMWH 332 Query: 385 LAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 Q ++ G ++ ++ D RP L +++ Sbjct: 333 NRRQVVFERLVMGQKSRGVDLGEKEINSFSDIFWKPQD---NRRPW----PAFLQALKEW 385 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V++ T + + + +++ E G + V+ G Sbjct: 386 KRTANQVILNFNTAKSRDKFLDVIQKEDI------------ELKTSFDPEVRGLYAVVAG 433 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 G+ M + + I G + Q G R K I + I P Sbjct: 434 TG---TGMHM-SWNHIYI-----LGEDVLQPGTRQRTGPTGRF---KGIARVEDIEPGDM 481 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + R + + A P+ Sbjct: 482 LVHRDYGLGRFGGLERISTDTQA--------------SDYLVLYYANDDKLYVPVDRFSL 527 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 V P + +L G +N ++R + ++ + + Sbjct: 528 VQKYKGPDGADPALDKLGGANWSKTKN-------RVRKAIQKIAKDLV 568 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 98/325 (30%), Gaps = 32/325 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ LL+ + + + M L + Sbjct: 130 TPGRLLDHFERGKLLMTGVQFLVVDEADRM-----------------LDMGFIPDIERIF 172 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--------IEVRPVATQV 432 + QT++ SAT + + D V ++V + Sbjct: 173 KMTPPKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKA 232 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L A E +V K + + + L+ HG +H D+D +R + + Sbjct: 233 KRLALRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAF 292 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R G +LV ++ GLD+P VS V D + IGR R G Sbjct: 293 RDGSLKILVASDVAARGLDIPAVSHVFNYDVP-----HHADDYVHRIGRTGRAGRSGVTY 347 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + + ++K + ++ + ++ + + R Sbjct: 348 MLVTPADDKGFDKVVKLIGSTPTEEKLDLDYSGAV-TIKREGDKRGGGRDRAPRGGDRER 406 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKI 636 G+ R P D++ L+ I Sbjct: 407 GRDRDRNRAPTEPSDVAAANLEAAI 431 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 30/266 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + D + + M L + K Sbjct: 133 TPGRLLDLMNQGFISLRDVQFFVLDEADRM-----------------LDMGFIHDVKKVI 175 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDD-- 434 Q+++ SAT + + + + + D I + + D Sbjct: 176 TKLPTHRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRK 235 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL I I + LV TK A+ + + L + G +H + R + + + Sbjct: 236 LLVHILDDKNI-KSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKS 294 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 E VLV ++ G+D+ E+S V + + + IGR R +G A+ + Sbjct: 295 RETRVLVATDIAARGIDVDELSHVINYELP-----NIPETYVHRIGRTGRAGHDGIALSF 349 Query: 554 GDKITPSMAKAIGETERRREKQQKYN 579 D + I + +R + Sbjct: 350 CDAEETEYLRDIHKLIGKRVPVIDNH 375 >UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VFC1_CORU7 Length = 497 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 95/272 (34%), Gaps = 16/272 (5%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSA 371 ++ G L +VV + + ++ E L Sbjct: 130 VTPIYGGVGFNQQIRALSRGTDVVVGTPGRLLDLHRRGELELSGVEVLVLDEADEMLDQG 189 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL------DPIIEV 425 + + + QT+ SAT L S + V+ + + ++ Sbjct: 190 FLDDIRQIMSLTSPDRQTMLFSATMPGPVLSLSREFMKQPVMIQADSTAAADTHERVTQI 249 Query: 426 RPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + ++D + LS I Q R +V T TKR A + E L G RV +H D+ Sbjct: 250 AFQSHKLDRMSTLSRILQSPGRG-RTIVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQA 308 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + ++ R G DV+V ++ G+D+ +V+ V ER+ + IGR A Sbjct: 309 DREQSLQLFRDGAVDVMVATDVAARGIDVTDVTHVVNYQVP-----EDERTYVHRIGRTA 363 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREK 574 R +G AI I E + Sbjct: 364 RAGKDGTAITLVGWDEVPRWDHISEALGLGLQ 395 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 96/318 (30%), Gaps = 21/318 (6%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 G L ++V + Q GM + + L E L + Sbjct: 114 GVGMNPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVK 173 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQ 431 K Q++ SAT + + + + + + ++ + Sbjct: 174 KILALVPKEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGK 233 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL+ I +VLV T TK A + E+L ++G LH + R + + Sbjct: 234 KKALLAHIINENKW-SQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAG 292 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G+ LV ++ G+D+ E+ V + + IGR R +G+A Sbjct: 293 FKSGDIRALVATDIAARGIDIDELPHVVNYEIP-----NVSEDYVHRIGRTGRAGSSGEA 347 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP----QGLNKKVVDILALGQNIAKT 606 + + + E ER ++ G P + + G Sbjct: 348 VSFVCM---DEEGFMQEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGRPP 404 Query: 607 KAKGRGKSRPIVEPDNVP 624 + + + Sbjct: 405 SRDVMQAAAKAARTEMLQ 422 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 95/298 (31%), Gaps = 12/298 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G+P L A +VV + G R L E L Sbjct: 106 YGGQPIDRQMRRLRAGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEE 165 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQV 432 + Q ++ SAT + + + + + P I R Sbjct: 166 VQTILDAAPPERQLVFFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNF 225 Query: 433 DDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + + L+ T TK+ A++L E L++ G R LH D++ R ++ Sbjct: 226 KNRAQALTRVLAAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLG 285 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R + +V+V ++ GLD+ ++S V D ++G S I IGR R G Sbjct: 286 RFRRQQLNVVVATDVAARGLDIADLSHVINYDMPQDG-----ESYIHRIGRTGRAGRTGV 340 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 AI + + I K I + + V + Q Sbjct: 341 AISFALPTDRYRLRLIERATGSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDP 398 >UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Yarrowia lipolytica RepID=PRP28_YARLI Length = 575 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 100/307 (32%), Gaps = 17/307 (5%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 GY + + + P L D + L++ +V + + M + Sbjct: 275 GGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQV 334 Query: 360 TLVEYG---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 V D QT+ +AT + + + + Sbjct: 335 QKVLASLPSSNAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTI 394 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + ++E + L +I + ++V KR E +++ L Sbjct: 395 GSAGQAGSTVTQLVEFLNTDEKRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAA 454 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G R +H +R + ++ L+ G DVLV ++ GLD+P VSLV Sbjct: 455 GWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVN-----FQMA 509 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + S IGR R G A+ + + + + + R + N+E P Sbjct: 510 NNIESYTHRIGRTGRAGKRGTAVTFLGQEDDDVLFELKQMI-SRSEASPNNQELSRHPAA 568 Query: 589 LNKKVVD 595 KK+ Sbjct: 569 RMKKLQQ 575 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 89/292 (30%), Gaps = 29/292 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + ++ I + M+ + + + Sbjct: 129 TPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSIL----------------K 172 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 T SAT S +++ + I V + S Sbjct: 173 HLANYDKVTSIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFS 232 Query: 438 EIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 I+ + +V T+ + L + L + +H + ER ++ + + G Sbjct: 233 AIQDVTIVENPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEG 292 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +F LV NL G+D+ +SLV D + + + GR R GKAI + Sbjct: 293 KFRYLVTTNLAARGIDIESISLVINYDMPLD-----KEVYVHRTGRTGRAGNKGKAITFI 347 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGI--TPQGLNKKVVDILALGQNIA 604 + + I + E + K+ + +N A Sbjct: 348 TPDERILFREIEDYIGYAIPPMNIPSEREVERLKPAFEDKMRNRPLTKRNKA 399 >UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCT2_ELUMP Length = 502 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 106/331 (32%), Gaps = 22/331 (6%) Query: 329 LPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++ I + + E L N+ + Sbjct: 119 LKKRPRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKR 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 Q + SAT ++ + +V ++ I + + L+S +R Sbjct: 179 QMMMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFETLVSLLR 238 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A L+ T+ E L ++L + + +H +R I+D R +FD+L Sbjct: 239 ---AKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDIL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+P + LV D I IGR AR G AI + Sbjct: 296 VATDVAARGLDIPHIQLVINYDLPL-----RAEDYIHRIGRTARAGAKGLAISFVTPND- 349 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K + ++ K Q + K+ ++ + K K + E Sbjct: 350 ---KHLWNDIQKFLKGQDVVQRPIGRAHKEQKQNFASKKRENKKSQNQKKDFKKKKVNAE 406 Query: 620 PDNVPMDMSPKALQQKIH-ELEGLMMQHAQN 649 P P+ + K + +I ++E + Sbjct: 407 PKKEPLTFAEKRREARIKTKIENKNQKITSK 437 >UniRef50_Q255X7 Transcription-repair coupling factor-superfamily II helicase n=13 Tax=Chlamydiaceae RepID=Q255X7_CHLFF Length = 1084 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 67/378 (17%), Positives = 120/378 (31%), Gaps = 36/378 (9%) Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 +G+ LS G+ +F+ + ++ +H I + + Sbjct: 629 QRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVDILIGTHKLINKNLEFKNPGLLIIDE 688 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 +G ++ L R + + VSATP L S D + LD Sbjct: 689 EQRFGVKVKDFLKERYPMVDC--------LTVSATPIPRTLYMSLSGARDLSLITMPPLD 740 Query: 421 PIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLH 477 + + D+ L + +R + V L + R H Sbjct: 741 RLPVSTFILEHNDETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLVPEARIAVAH 800 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + + E I + + E +VLV L+ G+D+P + + + ADK G L Q Sbjct: 801 GQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADKFG----MADLYQ 856 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 GR R Y + P + + +R E K G+ + D+ Sbjct: 857 MKGRVGRWNR---KAYCYFLVPHLDRLSVPAAKRLEALNK-----QEYGGGMKIALHDLE 908 Query: 598 ALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH----AQNLEF 652 G NI T G + ++ K L++ + L+ +EF Sbjct: 909 IRGAGNILGTDQSG--------HISAIGFNLYCKLLKKTVAALKNNTSPALFNDDVKIEF 960 Query: 653 EEAAQIRDQLHQLRELFI 670 ++I D L + I Sbjct: 961 PYKSRIPDTYIDLASMRI 978 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 88/253 (34%), Gaps = 23/253 (9%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 + + + F A + ++ +++ ++ L ++ F Sbjct: 24 PLLIENIRPGARGFLAAKFFHERKKSVIMIT-TRSCIDDLLEDLSSFLG----------- 71 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV-VASVSAIYGLG-DP 151 P PSS+ + VN R + E++ V V ++ A+ P Sbjct: 72 ---FPPLEFPSSEIDLSPKL-VNIDAVGKRDKILYELCEKKSPVFCVTTLKALLEKTRSP 127 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + L + VG ++D ++ L Y A +G F RG +IDIFP S + Sbjct: 128 KDTVHQHLDIQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQE-P 186 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R+E + E++ + F+P + + +I P T + + Sbjct: 187 FRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPA----TKDSGKEVLSHCLLDYFHTPP 242 Query: 272 KVLLENNKLLEEQ 284 + +N LE+ Sbjct: 243 AFIFDNLARLEDD 255 >UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VHF0_NAEGR Length = 493 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 56/376 (14%), Positives = 121/376 (32%), Gaps = 38/376 (10%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 I P + R+ + + E + +E + QF+ + + Sbjct: 143 IIPMCCQIAKLPRMNDEIAK-DGPYGLILVPTRELAEQIEREATKYARQFEF-RVQAIIG 200 Query: 303 CSGIENYSRFLS--GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 IE SR + P L D L +++ + + + M + + Sbjct: 201 GVSIEKQSRLIRGGCEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVN 260 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + + QT+ SAT + + +V G + Sbjct: 261 TILEN---------------MPTHIQRQTMLFSATMPPEVENIAMKYLKKRVTVAVGEVG 305 Query: 421 PIIE--------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 +E ++ + D LL + V+V K+ + + +++ G R Sbjct: 306 RAVERIEQEVMWIKHENAKRDKLLELLYDADPP---VIVFCNLKKEVDAIAKFVSNAGFR 362 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H + R + + G+FDV+V ++L G+D+ V+LV ++ Sbjct: 363 STSIHGNKSQEARNSALEAFKSGKFDVIVATDVLGRGIDISGVTLVVNY-----SLPKTI 417 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGL 589 + IGR R G+A+ + K + + + + ++ + + Sbjct: 418 SAYTHRIGRTGRAGRTGRAVSFLTKDDTEIMYDLKKMLESTKNTVPEELAQHPSAAQKPD 477 Query: 590 NKKVVDILALGQNIAK 605 KK + GQ + Sbjct: 478 KKKSDQPIGGGQESEE 493 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 49/325 (15%), Positives = 108/325 (33%), Gaps = 34/325 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L D L + ++ + + M L + L+ Sbjct: 145 TPGRIIDHLNRDTLDLSHVEYLVLDEADRM-----------------LDMGFLDDVLEII 187 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDL- 435 + +T SAT ++ + + + + T + ++ + D L Sbjct: 188 KRTGENKRTFLFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLP 247 Query: 436 -LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L I +V TK +++++ L + G LH D +R ++ R Sbjct: 248 LLCRIIDMNPDFYG-IVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRK 306 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + +LV ++ G+D+ ++ V R + IGR R G AI + Sbjct: 307 KQLRILVTTDVAARGIDIDGLTHVINYSVP-----RDPEYYVHRIGRTGRAGKKGFAITF 361 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + + + + I LN+++ +L +N K + + Sbjct: 362 VTRDDYFHFARVKRFAKAKIIKDSIPQVEDI----LNRQLEKLLDTLKNAPKVSNELYKR 417 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHE 638 + + + P + L I + Sbjct: 418 AAQQIIEEMGPTEAVEMLLHTLIKD 442 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 80/260 (30%), Gaps = 28/260 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + H+ + + M L + Sbjct: 132 TPGRLIDHIEQKTIDLKAVEHLVLDEADQM-----------------LDMGFIKPIRQVA 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-----VRPVATQVDDL 435 Q ++ SAT + + + E V + Q Sbjct: 175 SRLPAQRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRA 234 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L R L+ T TKR A+ + YL+ G +H D + +R ++ + G Sbjct: 235 LLSELYADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAG 294 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 LV ++ G+D+ V+ V + + + IGR AR G +I Sbjct: 295 RVRALVATDIAARGIDVDNVTHVINYELP-----FVAEAYVHRIGRTARAGKEGHSITLV 349 Query: 555 DKITPSMAKAIGETERRREK 574 + K I R+R Sbjct: 350 ADDERKLLKDIERITRQRIP 369 >UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N873_9BACT Length = 1098 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 95/268 (35%), Gaps = 23/268 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-DLLSEIRQRAAIN 446 + +SATP L + D T + +A + + + IR A Sbjct: 711 DVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEMQVAQAIRAELARG 770 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V R E+ + L H ++ E I+ G+ D LV Sbjct: 771 GQVYYLYNRVRTIEEKADKLRALVPEAKFAVAHGQMNEHELEAIMTSFLEGKIDCLVCST 830 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P + + I AD+ G L Q GR R + Y + P ++ Sbjct: 831 IIESGLDVPNANTIIIERADRFGLAE----LYQLRGRVGRWTHQ---AYAYMLLPK-SQL 882 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNV 623 + R+R + G G + D+ G N+ ++ G +++ Sbjct: 883 VSTDARKRLSAIRRCSNLG---AGFQLALHDLEIRGSGNLLGSEQSG--------HLNSI 931 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLE 651 D+ + L+Q++ L G ++ +E Sbjct: 932 GFDLYCQLLKQEVSRLRGEQVEFLPEVE 959 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 5/171 (2%) Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN---EHIEQMRLSATKAMLER 133 + F N E V+ + ++ E +P I + E R A A L Sbjct: 54 IAAFPELNLAERAVAELEEFRQELDLPLRLLVIPEAGRGKLLFPGGESRRARALNAALTG 113 Query: 134 RDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 +VV SV A+ P+ ++ L L GM + +L +L L Y +A G Sbjct: 114 EFDLVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLVRLDYDDEYEATVSGE 173 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 F RG +IDIF D RVE F + ++ L F P T + + + + Sbjct: 174 FARRGGIIDIFSPAHD-FPCRVEFFGDTIDSLRSFAPETQRSTGAVEEYRV 223 >UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=Bacteria RepID=C7PCT4_CHIPD Length = 444 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 103/299 (34%), Gaps = 13/299 (4%) Query: 329 LPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +V+ I G + D + L E L + ++ Sbjct: 122 LTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKER 181 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-----VATQVDDLLSEIRQR 442 Q + SAT + + + + + P ++ Q L+ ++ R Sbjct: 182 QNLLFSATMPDKIRKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQKTGLIKQLLAR 241 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +++ K+ + LT L++ V +HSD++ +R +++ D + + +LV Sbjct: 242 KEFGC-IIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVA 300 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++L G+D+ ++ LV D + I IGR AR +G A + Sbjct: 301 TDILSRGIDIEDIDLVINYDVPND-----AEDYIHRIGRTARAATDGTAYTIISEKEQRK 355 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 I E + + + G P+ K K G G +R +P Sbjct: 356 FARIEEVLGKPVTKAEVPAALGPVPEYSPKPFRSGGGKRPQGKKRPGGGGGGNRNHSKP 414 >UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C1EDS5_9CHLO Length = 675 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 96/289 (33%), Gaps = 32/289 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + M + F Sbjct: 368 TPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFEDDIRDIYSFF-------------- 413 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVAT--QVD 433 QT+ SAT + + +V+ +V G LD I EV V ++ Sbjct: 414 ---KSQRQTLLFSATMPEKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQEAKIV 470 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL +++ A VL+ K +D+ EYL G +H ER I + + Sbjct: 471 YLLECLQKTAPP---VLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAISEFK 527 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 DVLV ++ +GLD P++ V D +E + + IGR R Sbjct: 528 AQRKDVLVATDVAGKGLDFPDIQHVINYDMPEE-----IENYVHRIGRTGRCGKTGIATT 582 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 S + RE +Q+ + ++++ + G Sbjct: 583 FINKNQSETILLDLKHLLREAKQRIPPVLAMLDDPMDQEAELVALTGTK 631 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 84/287 (29%), Gaps = 48/287 (16%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G + P L D+L + +++ + + M + Sbjct: 252 GGAPKGSQARDLERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQI 311 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-- 417 K E Q + SAT + + D + G Sbjct: 312 R-----------------KIIEQIRPDRQVLMWSATWPKEVQTLAEDFLHDYIQINIGSL 354 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHG 470 + +EV + + L + +R N ++L+ TK+ +D+ +++ G Sbjct: 355 SLAANHNIRQHVEVMQDSEKEGRLTNLLRDIGGDRNNKILIFVETKKKVDDIARLVKQEG 414 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D ER ++ + R G+ VLV ++ G Sbjct: 415 FPAICMHGDKSQQERDHVLNEFRSGKCAVLVATDVAARG--------------------- 453 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 R + IGR R+ G A + AK + + Sbjct: 454 KIRHYVHRIGRTGRSSQMGTAFTFFTPQNARQAKGLVAVLEEASQPI 500 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 55/379 (14%), Positives = 116/379 (30%), Gaps = 21/379 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L A + + T+ ++E G R G Sbjct: 63 LLHHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIE 122 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P + + L ++V + + + L E L K Sbjct: 123 PQITE-LRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMA 181 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDDL 435 Q++ SAT + + + G + V + I + R L Sbjct: 182 LLPSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFAL 241 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + ++ LV TK A L + L H +H D + +R + + + + G Sbjct: 242 LLHLV-KQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHG 300 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + +LV ++ G+D+ ++S V + + + IGR R GKAI Sbjct: 301 DVQILVATDVAARGIDIEKLSHVVNYELP-----GNPEDYVHRIGRTGRAGSKGKAIS-- 353 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 ++ + + E+ + + + G + + + D ++ A+ K Sbjct: 354 -LVSEHETELLTSIEKLLNTKLEIEQIAGFDAELFVRSLPD---RKNRVSADIARRSNKQ 409 Query: 615 RPIVEPDNVPMDMSPKALQ 633 + + + Sbjct: 410 AEVANGEKTRKYSGSRRSA 428 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 87/265 (32%), Gaps = 28/265 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + H + + M L + + + Sbjct: 135 TPGRLLDLINQGFIDLSHVEHFVLDETDQM-----------------LDMGMLHDVKRII 177 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLS 437 + Q + SAT + + + V IIE + + Sbjct: 178 TYLPRERQNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAA 237 Query: 438 EIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + NE VLV + TK A+ + + L + G +H + R + + + Sbjct: 238 LLTYWLKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKR 297 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 + +LV ++ GLD+ E+S V + + I IGR R GKAI + Sbjct: 298 KTRILVATDIAARGLDIQELSHVINYNLP-----EVPETYIHRIGRTGRAGLGGKAITFC 352 Query: 555 DKITPSMAKAIGETERRREKQQKYN 579 D + + I + + + K + Sbjct: 353 DFEEKPLLRDIQKRIGKTLPEVKEH 377 >UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I992_9CLOT Length = 370 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 118/337 (35%), Gaps = 37/337 (10%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ ++ I + ++L + L Q + +F++ + L G + S+ Sbjct: 56 LLPILQIIDSNSKSTEVLILSPTRELAIQITEEANKFNINDIGILAAYGGKDVGSQLKKL 115 Query: 316 RGPGE----PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D+L + + + V I + M L Sbjct: 116 NKGINLIIATPGRLLDHLERKSINLSKLNTVVIDEADQM-----------------LLMG 158 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPII 423 N K + QT+ SAT + + + + + + + + Sbjct: 159 FRNEIEKIMSYAPKKLQTLCFSATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEV 218 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 +VD L+ + ++ TKR A++L L G + +HSD+ Sbjct: 219 VKTTDRWKVDALVKIL--EEDNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQN 276 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R +I++ R E L+ ++ G+D+ V+ + DA S S I IGR A Sbjct: 277 KREKIMKSFRDCEIQFLIATDVASRGIDVTGVTHIYNYDAP-----ESVESYIHRIGRTA 331 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 R +G L D ++ + I + +++ N Sbjct: 332 RAGDSGYTCLITDPKNYTILEEIENYLQYTIPEREVN 368 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 58/355 (16%), Positives = 115/355 (32%), Gaps = 15/355 (4%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A +E N + + L + +++ E+ + + LS G G Sbjct: 53 AAFAIPIIENIEANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYG-GSHIVR 111 Query: 325 LFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +VV + + + D+ + L E + + Sbjct: 112 QIKSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRT 171 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLS 437 QT + SAT G E S + + ++ ++ + ++ L Sbjct: 172 NPNRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALM 231 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + N +V TKR + L E L + V LH D+ R ++++ R Sbjct: 232 RLLEIHKAN-LAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTI 290 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV ++ GLD+ +V +V D + + + IGR AR +G + Sbjct: 291 QILVATDIAARGLDVDDVDIVFNYDLP-----QLDEYYVHRIGRTARAGKSGLSFSLISG 345 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + I + KQ + Q + + DI + + Sbjct: 346 RDNNRLRQIENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKD 400 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 18/360 (5%) Query: 299 ELGYCSGIENYSRF----LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRG 353 E + R +S G P L ++V I + + Sbjct: 123 SGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSRGVDVLVATPGRLIDLVENHAVKL 182 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV- 412 D+ L E L + +++ SAT + E +G + D V Sbjct: 183 DQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHSLFFSATMPHAIAELAGSMLRDPVR 242 Query: 413 --VRPTGLLDPIIEVRPVATQVDD---LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 V P +E R + + LL+E+ I+ R LV + TK A+ + L Sbjct: 243 VAVTPVAKTADRVEQRVILVDKANKGQLLAEVLSTEDID-RALVFSRTKHGADKVVRVLA 301 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + G +H + +R ++ R G+ L+ ++ G+D+ VS V D Sbjct: 302 KAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIATDIAARGIDVTGVSHVINFDLP--- 358 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 S + IGR AR G AI + D + ++I + + + Sbjct: 359 --NVPESYVHRIGRTARAGREGIAISFCDHEERAFLRSIEKLIKMQLPSSDRRGAGTRFA 416 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + ++ + G+ P + + S + + EG Sbjct: 417 VPELEPIILDERDETSERSDYIGRSGRQNPRGQRPRHGDERSGEGRSRAPRSEEGRPQAA 476 >UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=Atopobium RepID=C8W8S2_ATOPD Length = 450 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 104/382 (27%), Gaps = 22/382 (5%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR--- 285 F + + + + + A R V N K +R Sbjct: 45 ASAQTGTGKTAAFMLPTLQRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAY 104 Query: 286 ----LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ ++ + + + G L ++V Sbjct: 105 PRALIVTPTRELAAQIDNVAKSVCASTGQQAV-IVTGGAHYKHQIAALQKGCDVLVATPG 163 Query: 342 VTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I + + + ++ E L + E A QT+ SAT Sbjct: 164 RLIDLLDKKHTSLEDIQVLVLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASI 223 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQ-RAAINERVLVTT 453 + D Q LL + ERVLV Sbjct: 224 TSTIDALLKDPERIEIARTGQTAATIEQHLCSVTQGQKPQLLKALIDSFDPAPERVLVFC 283 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK + + + L+ G +V +H+D R + + R +LV +++ G+D+ Sbjct: 284 RTKSRVDSIYKNLKAAGLKVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQ 343 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 + +V D + + IGR R G+A + + + I + Sbjct: 344 GIDVVINFDVPLD-----PEDYVHRIGRTGRAGATGQAYTFMGPDEVTPLREIEYFTKAL 398 Query: 573 EKQQKYNEEHGITPQGLNKKVV 594 T + + + Sbjct: 399 VPAWDLPGFGYETGRIILQASR 420 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 65/412 (15%), Positives = 120/412 (29%), Gaps = 15/412 (3%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P Q A L+ + + + T+ + + Sbjct: 36 QAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAA 95 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARK 358 G + G+ L ++V I + + D Sbjct: 96 SFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNA 155 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 L E L + + Q ++ SAT + +VD + Sbjct: 156 LVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVFFSATLPDEISRIVNHYLVDPLRIAIET 215 Query: 419 ---LDPIIEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 IE R V + L + + + +V T+ L E L G Sbjct: 216 KTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPVDAAIVFVRTRAACTTLVEQLLLRGVNA 275 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L D+D R + L+ G+ DVL+ ++ GLD+P ++ V D + Sbjct: 276 AALSGDLDQSLRERTVERLKRGKVDVLIATDVAARGLDVPRITHVFNYDLP-----QDAE 330 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG---L 589 + IGR R G AI + + + ++ ++ + +E I Sbjct: 331 AYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVTGQQMQEVELPDEDAIRAHRNELF 390 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 K+V+D LA G + + G M ++ + I L Sbjct: 391 RKRVLDTLARGSDYQRELIDGLVDDGYDPVDLACAMASMARSGEAPIGRLPK 442 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 86/317 (27%), Gaps = 17/317 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G L +VV I + D R L E L Sbjct: 124 YGGASFVPQLRGLERGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAED 183 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPV 428 Q SAT + + + + I + P Sbjct: 184 VDVILAKTPATKQVALFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPY 243 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + L + + + +V T+ AE++ L G + D+ ER I Sbjct: 244 RNKAEALSRVL--ATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERI 301 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + LR G DVLV ++ GLD+ + LV D R + + IGR R Sbjct: 302 VERLRSGALDVLVATDVAARGLDVERIGLVVNFDVP-----REVETYVHRIGRTGRAGRT 356 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKT 606 G A+ + + I R + + + A G Sbjct: 357 GNALTFLTPKEKPRLRTIERVTGSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSA 416 Query: 607 KAKGRGKSRPIVEPDNV 623 + + D + Sbjct: 417 HRERLVAHVAELGVDPL 433 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 60/374 (16%), Positives = 115/374 (30%), Gaps = 21/374 (5%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 E L + T+ + +++ R G Sbjct: 62 LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDK 121 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 D L A +VV + + ++ L E L + K + Sbjct: 122 QTAD-LRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQM 180 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVAT---QVDDLL 436 QT+ SAT + + + + +E +A Q +LL Sbjct: 181 LPRQRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLL 240 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +N +V+V TK+ + +T L + +H D R+E + + G Sbjct: 241 ERLIVDLHMN-QVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGN 299 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 VLV ++ GLD+ E+ V + + IGR R +G AI D Sbjct: 300 LRVLVATDIAARGLDIAELPFVINYEMP-----AQPEDYVHRIGRTGRAGADGVAISLMD 354 Query: 556 KITPSMAKAIGETE--RRREKQQKYNEE---HGITPQGLNKKVVDILALGQNIAKTKAKG 610 + M ++I E + ++ + E + ++ + KA+ Sbjct: 355 ESEQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKPEKPEMREPRQR-NRYESAKAQR 413 Query: 611 RGKSRPIVEPDNVP 624 +RP ++ Sbjct: 414 EKNTRPENAANDAG 427 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 48/348 (13%), Positives = 103/348 (29%), Gaps = 40/348 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + ++ I + M L Sbjct: 128 TPGRIIDHLNRGTLDITKIKYLVIDEADEM-----------------LDMGFIEDVEMIL 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---------IEVRPVATQ 431 Q + SAT + + + + T + I + Sbjct: 171 SKTNKEKQILMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESN 230 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +LLS + LV T TK +E++ L + G L+ D+ +R I+ Sbjct: 231 KIELLSRLIDIDTNFYG-LVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDR 289 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + +L+ ++ G+D+ + V ++ + I IGR AR G A Sbjct: 290 FKSKRIKILISTDVAARGIDIDNLKYVINY-----SLPQNPENYIHRIGRTARAGNEGTA 344 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK- 609 I + I + + ++ K + I + K +I + + Sbjct: 345 ITFVTPTEYRRFMFIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEI 404 Query: 610 ------GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 P ++ L+++ + + +++ + Sbjct: 405 LAETILEETDQEPSQIIASILKYFYGGILKEENYNKIKEVKNSSKSKD 452 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 82/268 (30%), Gaps = 32/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M + Sbjct: 132 TPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLR-----------------RIA 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 QT++ SAT + + + + + + A + Sbjct: 175 AAVPKERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGP 234 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL ++ + R LV T TK A+ + L G R +H + +R + R Sbjct: 235 LLLVNLQDESID--RALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFR 292 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ VLV ++ G+D+P VS V + + IGR AR GKAI Sbjct: 293 NGDSKVLVATDIAARGIDVPGVSHVFNYEIP-----NVPEQYVHRIGRTARAGREGKAIS 347 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNE 580 + + I R + E Sbjct: 348 FVSRDEKKYLLDIQRQIRMKIPIVDLPE 375 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 103/324 (31%), Gaps = 15/324 (4%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 ++ + + ++ LT + +++ + + G + P T + Sbjct: 91 QDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQT--E 148 Query: 328 YLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +++ + I + L E L + + Sbjct: 149 ALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLPEQ 208 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 Q+++ SAT + + + V P I +D + + Sbjct: 209 RQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLHI 268 Query: 443 AAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +LV T TK A+ + + L + +H + R + + + + VL Sbjct: 269 LKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTRVL 328 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ G+D+ E++ V + + + IGR R +G AI + + Sbjct: 329 VATDIAARGIDIDELTHVVNYELP-----NVPETYVHRIGRTGRAGADGIAISFCEPEEK 383 Query: 560 SMAKAIGETERRREKQQKYNEEHG 583 + K I + R + + H Sbjct: 384 AFLKDILKLISREIPVETEHPFHN 407 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 87/269 (32%), Gaps = 12/269 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNR 375 G D L LVV + G + R L E L + Sbjct: 190 YGGTGMQRQLDGLTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDD 249 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQV 432 + + QT+ +SAT + + D V P ++ Sbjct: 250 IERILKRCPSERQTLLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQ 309 Query: 433 DDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 D +++ + L+ KR A++L L+ + +H D+ +R +I+ Sbjct: 310 DRKFELLKRVVEREKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMA 369 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 R + L+ +++ G+D+ +S V D + + + IGR R +G Sbjct: 370 AFRTADIKYLIATDVMSRGIDVSGLSHVINYDLPMD-----IENYVHRIGRTGRIGKDGI 424 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKY 578 AI + I R ++ + Sbjct: 425 AISFVLPEQGEHLTNIEMMINRLIEEDRV 453 >UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L3_GEMAT Length = 1104 Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 59/295 (20%), Positives = 104/295 (35%), Gaps = 31/295 (10%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 L+ + ++ATP L +S + D + T D + V D L+ E I + Sbjct: 712 KLSTDVLTLTATPIPRTLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRE 771 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V E + ++L R R H + E +++R GE D+L Sbjct: 772 LDRGGQVFFVHNRIETIEAIADHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDIL 831 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P + + + AD G + L Q GR R+ Y + P Sbjct: 832 VSTLIVESGLDVPNANTMFVNRADHLGLAQ----LYQLRGRVGRSHRR---AYCFLLVPD 884 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 + E RR +++ E G G + D+ G N+ + G Sbjct: 885 R---VDEDAERRLAVLEHHTELG---AGYRVALKDLELRGAGNLLGPEQSGFVH------ 932 Query: 620 PDNVPMDMSPKALQQKIHEL-----EGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 V D+ + L + + L + + NL+F A + + Sbjct: 933 --AVGFDLYLRLLDETVRLLADGGGQKPWIPADVNLDFP-AYLPDEYIISQEAKL 984 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 18/238 (7%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT-L 69 + A R+ + L A + G+ GS +A + L + +V+ ++ Sbjct: 7 LIDAIAGLPAFDRMLKALPGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVIADQLGD 66 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A + +++ + V + + + E + + R+ + Sbjct: 67 AERWLADLQALLDDVPVALYPPREGFGEVE---------------PHAEVAGERVETLEK 111 Query: 130 MLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + +++ + A+ P L L G ++ L + + R Sbjct: 112 LGRSAVRILLTTSRAVLERTALPRALSGARLELRKGDQRRLSDLVTHLESIGFERVPMVE 171 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 F VRG + DI+ + +R+E + +++ L FD T + I P Sbjct: 172 DVAQFSVRGGIFDIYSFGMAE-PVRLEFWGDDIIELRHFDLNTQRSTRDAELALILPV 228 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 101/311 (32%), Gaps = 34/311 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P +FD++ L + + + + M L ++ ++ Sbjct: 128 TPGRVFDHISHGTLSTKNIRFLVLDEADRM-----------------LDMGFLDQVVRIV 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLS 437 + T+ SAT + + V ++ ++ + Sbjct: 171 KTLPKERITLLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNT 230 Query: 438 EIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 ++ + E ++ TK + + +L + G R LH DI +R+ I+ + G Sbjct: 231 QLNRLLIVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQG 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +F +LV ++ G+ + ++SLV D + + + + IGR R G+A Sbjct: 291 KFHILVATDVAARGIHIEDLSLVINYDVPND-----KDNYVHRIGRTGRAGHEGRAFSLV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA-LGQNIAKTKAKGRGK 613 I E +++ +E K + + N K KA Sbjct: 346 TGDDIISLYEIEEHIGTLILEEELPDEE-----AFTKAREEAAQWIKANSLKEKAPRSAS 400 Query: 614 SRPIVEPDNVP 624 + V+ Sbjct: 401 ADSSVKQKRTG 411 >UniRef50_C2K9U3 ATP-dependent RNA helicase (Fragment) n=2 Tax=Staphylococcus RepID=C2K9U3_STAAU Length = 361 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 101/294 (34%), Gaps = 18/294 (6%) Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPII 423 +D+ ++ A+ QT+ SAT + + T DP I Sbjct: 11 MNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQI 70 Query: 424 EVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 E + + E +V TKR ++LT L G + LH DI Sbjct: 71 EEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDIT 130 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R+E+++ + + ++LV ++ GLD+ VS V D + S IGR Sbjct: 131 QAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGR 185 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R G A+ + + I + I + R+ + + + + Sbjct: 186 TGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVE--- 242 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 ++K + + + +D+ LQ+ I + L FE+ Sbjct: 243 NWMSKESESRLKRISTELLNEYNDVDLVAALLQELIEA----NDEVEVQLTFEK 292 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 126/432 (29%), Gaps = 44/432 (10%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + F I + + + ELA + + Sbjct: 39 SGKNIVVQSQTGSGKTASFGIPICHQVEWKKRKPQVLVLAPTRELAIQIQE--------- 89 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFL--SGRGPGEPPPTLFDYLPADGLLVVDES 340 L +F + L S E ++ L P L D++ + + + Sbjct: 90 --DLFNLGRFKRLKVEALFGRSSFEKQAQRLKEMTHILVATPGRLLDHMARETVDLSHIE 147 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + I + M+ ++ Q + SAT Sbjct: 148 TLVIDEADEMFN-----------------MGFIDQITSIINRIPKKSQKLLFSATMPERV 190 Query: 401 LEKSGGDVVDQV---VRPTGLLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 + + + + ++ I+ R D ++ + + ++ T Sbjct: 191 KDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITENPDSSIIFCNT 250 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K E +T ++E+ G +V LH ++ R +++ D + G F LV ++ GLD+ +V Sbjct: 251 KEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVAARGLDIDDV 310 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 SLV D + S +GR AR GKA+ + I + Sbjct: 311 SLVVNFDVP-----ENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTDHELQ 365 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP-DNVPMDMSPKALQ 633 K + + K KA + + M P + Sbjct: 366 --KVVKPGQSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKTKMRPVDVV 423 Query: 634 QKIHELEGLMMQ 645 + +EG+ + Sbjct: 424 GALCSIEGMNAE 435 >UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 Tax=Spiroplasma citri RepID=Q14NT1_SPICI Length = 443 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 73/412 (17%), Positives = 134/412 (32%), Gaps = 45/412 (10%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF--DLEMMNELGYCSGIENYSRFL 313 IV ++ + L + ++L L Q + Q +F LE +N C G + Sbjct: 56 IVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIY 115 Query: 314 SGRGPGE---PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + R P + D++ L + + + + M L Sbjct: 116 ALRKSNIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEM-----------------LKM 158 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPII 423 K + QT+ SAT LE + + V V + Sbjct: 159 GFKTDLDKVFQNAPNKYQTLLFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQH- 217 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V ++ +D+L + + +R ++ + TK + E L +G ++ D Sbjct: 218 YVNAISYHKEDVLIALYKHL-QPKRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRY 276 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER + +R R G+ V+V ++ G+D+ + V D E S I IGR A Sbjct: 277 ERGQAMRLFRDGKVRVMVATDVAARGIDIDNIDYVINYDIPTE-----RESYIHRIGRTA 331 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G AI + + I ++K+ E IT L Sbjct: 332 RAGATGVAISIVS--NRNDLREIQHLGAYQKKKI---ELLDITTYDLK---QKPQERKNF 383 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 K K + ++ +D +K +G + +F++ Sbjct: 384 STNHKKSAFNKKNNSFKYEDSYLDNKKNQNAKKKFNTQGNKKWKQKKQKFDK 435 >UniRef50_UPI0001745840 transcription-repair coupling factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745840 Length = 1117 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 64/401 (15%), Positives = 119/401 (29%), Gaps = 37/401 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q E M++ Y Sbjct: 579 PMDRLLCGDVGFGKTEVAIRAAFKAVMGGKQVAVLVPTTVLAQQHLATFKERMSD--YPV 636 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SR P + + + + +V +H I + + A + + Sbjct: 637 TVEMLSRL----TPAKREKEILKGVKDGTVDIVVGTHRVISKDVQFKQLGLAVIDEEQRF 692 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L + D T + Sbjct: 693 GVKHKERFKQLF--------RLVDVLTLSATPIPRTLYLGLVGMRDMSTLDTPPPNRHAV 744 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + ++ + I + +V E + LE + R + H +D Sbjct: 745 QTSVCGYDERIIRDAINKEIERGGQVFFLHNRVMDMEKMKAKLEALSPKARVVIGHGQMD 804 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +++R GE DVL+ ++ G+D+P + + I AD+ G L Q Sbjct: 805 ETLLEDVMRRFIAGEADVLLCTTIIESGVDIPNANTIIIDRADRFGLA----DLYQLR-- 858 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G + + P R+R K G G + D+ G Sbjct: 859 -GRVGRGGERAHAYLMLPRDL-MTVGDARKRVTAIKQYTALG---SGFKIAMRDLEIRGA 913 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 N+ T+ G + D+ + L+ L+G Sbjct: 914 GNLLGTEQSG--------HIFAIGFDLYCQMLKSATARLQG 946 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 102/323 (31%), Gaps = 51/323 (15%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-RPTMVLAPNKTLAAQLYGEM 77 + + + L+ G L V F A L R V+ P+ + Q+ GE+ Sbjct: 26 KPFGTVWKALKSGG--IILDHVAKEAWPFATALAAQALPKRRLWVVCPDARVQEQVQGEL 83 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE----- 132 + + P + P + + R++A E Sbjct: 84 RVW---------------GLPALFFPRLSQMGDAAGLPDPDALAERITALTRFSESMAGK 128 Query: 133 --------------------RRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRA 171 + V+V ++ + L GM +D A Sbjct: 129 GHGKGKARPGDSGEATGGDEGQPRVLVICADSLDEEVPALHELEAGKMSLQTGMKLDVEA 188 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 +L+ L Y R +RG RG ++D+F ++++ LR+E FD+E+E L FD T Sbjct: 189 LLQDLGSAGYERVPVVTERGQVARRGGIVDVFSWQAEE-PLRMEFFDDELESLRSFDIHT 247 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 V R + +++ + + V+ + L +T + Sbjct: 248 QTSVQRFQRMQLL------LHSADTTGETTTVRQFIQEQDAVIALEVETLSPATVTITSG 301 Query: 292 FDLEMMNELGYCSGIENYSRFLS 314 ++ E + EN Sbjct: 302 ARADLAEEDFSTAIFENPLGVFH 324 Score = 42.5 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 31/283 (10%), Positives = 76/283 (26%), Gaps = 58/283 (20%) Query: 402 EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + D + + + + + ++ RV++ E Sbjct: 305 DLAEEDFSTAIFENPLGVFHAGDFVVQEARREQFTRQVEDWRKQKWRVVMFFHNPGERER 364 Query: 462 LTEY-----LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E L++H + + LL G +P Sbjct: 365 FEELVGGEWLQKHDLE----------------------------LALGLLHRGFVIPAAK 396 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR-REKQ 575 L + A+ G ++ R R + + + R RE Sbjct: 397 LAVLTGAEVFGRYQNTRRF--------RGSK--------LDEAQVLRQARDHLRELREGD 440 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + ++GI G +V + + + A+ P+ + V + + Sbjct: 441 LVVHLDYGIGKYG-GIEVREGARREEVMVIRYAEDAKVFVPVSQAHLVSRYVGVGSRAPT 499 Query: 636 IHELEGLMM-----QHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 +++L Q +++E A + + R+ + Sbjct: 500 LNKLGDARWVKTRAQAEKSVEEFAAGMLS--IAAQRQTLKGHA 540 >UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=Magnoliophyta RepID=RH53_ARATH Length = 616 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 99/336 (29%), Gaps = 33/336 (9%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L E + +E + + + G G + P Sbjct: 177 RNPLCLVLAPTRELARQVE-KEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + D + L + + V + + M L E Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEADQM-----------------LQVGFAEDVEIILEKL 278 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVATQVDDL 435 Q++ SAT ++ + + + + G D + + + Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASI 338 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + A + +V T TKR A+ L+ L + LH DI +R + R G Sbjct: 339 IGPLVTEHAKGGKCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDG 397 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 F++LV ++ GLD+P V L+ + + + + GR R G AIL Sbjct: 398 HFNILVATDVAARGLDVPNVDLIIHYELP-----NNTETFVHRTGRTGRAGKKGSAILIY 452 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + K I R + + Sbjct: 453 SQDQSRAVKIIEREVGSRFTELPSIAVERGSASMFE 488 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 114/380 (30%), Gaps = 23/380 (6%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L A + + + T+ ++E G R + G Sbjct: 63 LLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRT-AVVFGGINI 121 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L A ++V + + + L E L + Sbjct: 122 EPQIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMA 181 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP------VATQVDDL 435 + Q++ SAT + + + V + + + E L Sbjct: 182 LLSPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFAL 241 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + ++ L+ TK A L + L H +H D + +R + + + + G Sbjct: 242 LLHLIR-QQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHG 300 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + +LV ++ G+D+ ++S V + + + IGR R GKAI Sbjct: 301 DVQILVATDVAARGIDIEKLSHVINYELP-----GNPEDYVHRIGRTGRAGSKGKAIS-- 353 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL---GQNIAKTK--AK 609 ++ + + E+ + + + G + + + D G + K Sbjct: 354 -LVSEHEKELLANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMEN 412 Query: 610 GRGKSRPIVEPDNVPMDMSP 629 G KSR Sbjct: 413 GSEKSRSEKHRKLPSSQKYS 432 >UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Magnoliophyta RepID=RH5_ORYSJ Length = 512 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 105/322 (32%), Gaps = 24/322 (7%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + Q +++ E G GI + G L + +V+ Sbjct: 177 RELAQQIADVLCEAGAPCGISS-----VCLYGGTSKGPQISALKSGVDIVIGTPGRMKDL 231 Query: 347 IG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 I G+ R + L E L + A QT+ SAT + + Sbjct: 232 IEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQ 291 Query: 406 GDV-VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAA-INERVLVTTLT 455 + + + G D I+EV ++ L++ + + RVLV L Sbjct: 292 EFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFVLY 351 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A + L+ G +H D +R + + + G +++ ++ GLD+P+V Sbjct: 352 KREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIPDV 411 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 +V + + IGR R G A + + +A + RE Sbjct: 412 EVVINYSYPL-----TTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVL--REA 464 Query: 575 QQKYNEEHGITPQGLNKKVVDI 596 Q + KK I Sbjct: 465 GQVVPPALTKFGTHVKKKESQI 486 >UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792ED5 Length = 621 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 105/334 (31%), Gaps = 30/334 (8%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E +E + + M G SG + P L D++ + Sbjct: 279 APTRELVLQIESEVKKYSYKGIKAMSIYGGASSGKQKEVLRKGVEIVIATPGRLNDFVGS 338 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + D + + + + M + L D QTI Sbjct: 339 GAIDLSDVTFLILDEADRMLDLGFEPQIR----VSLLRVRPDR-------------QTIM 381 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-------ATQVDDLLSEIRQRAA 444 SAT + + + G LD + + L + + + Sbjct: 382 TSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEEEKEVWLDDFLKSCS 441 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++++++ K + L+ L G V +H + +R + LR GE ++L+ + Sbjct: 442 ADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNILIATD 501 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + G+D+ ++++V D F + + +GR R G AI + AK Sbjct: 502 VASRGIDINDITVVINYD-----FTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWGKAK 556 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + E + + + + K+ Sbjct: 557 DLVEVMEKSGQDVPPELQEMASRYEAKKERDRAE 590 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 88/266 (33%), Gaps = 17/266 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNR 375 G + L +VV + G RA L E L Sbjct: 182 YGGRAYEPQIEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPD 241 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPV 428 K T+ SAT + + + D I +V Sbjct: 242 VEKILSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYR 301 Query: 429 ATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 A +D + L+ + Q R +V TKR A +++ L + G +H D+ R Sbjct: 302 AHALDKIEVLARLLQAEGRG-RSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGARE 360 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + +R LR G+ DVLV ++ G+D+ +V+ V ER+ + +GR R Sbjct: 361 QALRALRHGKIDVLVATDVAARGIDVDDVTHVVNYQCP-----EDERTYLHRVGRTGRAG 415 Query: 546 VNGKAILYGDKITPSMAKAIGETERR 571 G A+ + D I + Sbjct: 416 NKGTAVTFVDWDDMPRWSLIDKALET 441 >UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID=C1E750_9CHLO Length = 611 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 32/285 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L S A L E L + + K Sbjct: 299 TPGRLHDFLAPPPGFSAPVSAR------------NAHYVVLDEADRMLDMGFEPQIKKII 346 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG----------LLDPIIEVRPVA 429 + A QT+ +AT + + + + D + G + IE+ Sbjct: 347 KMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANKSITQTIEIVTED 406 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEI 488 ++D ++ +++ R +V TKR + + ++ G R +H D D ER Sbjct: 407 QKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMKAMGLRSAGAIHGDKDQAEREYS 466 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + R G+ +LV ++ GLD+P V++V + D F + IGR R Sbjct: 467 LDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYD-----FPLQVEDYVHRIGRTGRAGKE 521 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 GKA + + A+ + + +Q+ E K Sbjct: 522 GKAHCFFTEEDAGAARELVQILE--GAEQEVPERLREMADRSRKS 564 >UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasidiella neoformans RepID=DBP3_CRYNE Length = 605 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 95/310 (30%), Gaps = 36/310 (11%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G R P D + L + S++ + + M Sbjct: 291 GVGKDGQARELSQKDTRVVVGTPGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDI 350 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-- 417 + QT+ SAT + + + + G Sbjct: 351 RRIIAHTPGH--------------KEGRQTVMFSATWPESVRRLASTFLNNPLRITVGSD 396 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQ--------RAAINERVLVTTLTKRMAEDLT 463 ++ I+EV D L+ + R+LV L K+ A+ L Sbjct: 397 ELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLE 456 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + G V LH D+ R + + + G+ +VLV ++ GLD+P+V LV Sbjct: 457 YTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDIPDVGLVIN--- 513 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F + + GR R GKA+ + + A R+ + +E Sbjct: 514 --VTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEM 571 Query: 583 GITPQGLNKK 592 P + KK Sbjct: 572 DRFPTTIKKK 581 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 34/396 (8%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A L+ + + + T+ + E + + G+ Sbjct: 61 AAFALPMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGL 120 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + ++V + I D R L E L + Sbjct: 121 QLSQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQA 180 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT------QVDDLLS 437 Q SAT + +VD V ++ D+L+ Sbjct: 181 PAERQVALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLT 240 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + + L+ TK +L + L+ HG L+ D++ R + L+ G+ Sbjct: 241 RIMELEPFDGL-LIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQL 299 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 DVLV ++ GLD+ +S V D + + + IGR R G+AIL + Sbjct: 300 DVLVATDVAARGLDVERISHVVNYDIPTD-----PSAYVHRIGRTGRAGRAGRAILLVEP 354 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K+I RR + ++ +++ + +I A+++ Sbjct: 355 RERGLLKSIERVIRRPIPSMEPPSAAALSESRIDRFIGEI-----RKAQSEQD------- 402 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 +D + L + E E M+ A L + Sbjct: 403 --------LDFFYRLLARISQEQEIEMLDIAAALAY 430 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 108/330 (32%), Gaps = 32/330 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DYL V D + I + M+ + Sbjct: 131 TPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPYD---------- 180 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV-------VDQVVRPTGLLDPIIEVRPVATQVD 433 Q + SAT +E + + V ++ ++ + Sbjct: 181 -----KRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFP 235 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL +R+ ER ++ TKR AE L + L + + + D++ +RM+I+ D + Sbjct: 236 LLLGLLRKMGM--ERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFK 293 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +++ ++ G+ + VS V D + + IGR AR G AI Sbjct: 294 DGTLPIMIATDVASRGIHIEGVSHVINYDLP-----QDCEDYVHRIGRTARAGAEGMAIS 348 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH--GITPQGLNKKVVDILALGQNIAKTKAKG 610 + D+ + I + +++ + ++ + + ++ + + Sbjct: 349 FADEDGAFYIEPIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELPHGRGGKPGDRGRS 408 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 K RP + S + E + Sbjct: 409 GDKGRPGDKGRPAGRSRSASGSDKPAGEKK 438 >UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Ciona intestinalis RepID=UPI00006A5795 Length = 573 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 50/326 (15%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + +++ + + M + K Sbjct: 275 TPGRLMDFLQHGEVNLRRCTYLVLDEADRMLDMGFEPQIR-----------------KII 317 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----------LLDPIIEVRPVAT 430 E Q SAT + + + + + + + Sbjct: 318 EQIRPDRQVTMWSATWPSEIRQLAKDFISTKSATHIKVGSSDLQASENIQQKFAICHSPD 377 Query: 431 QVDDLLSEIRQRAAINE-------RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + I + N+ + LV TK + L++ L G R +H D Sbjct: 378 KFKQFKEIIIELKNANKDQFSQFPKTLVFCNTKATCDRLSQQLRNAGLRSNAIHGDKTQS 437 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R ++ + R G ++L+ ++ GLD+ ++ V D + I IGR Sbjct: 438 QRDSVLNNFRRGRSNILIATDVAARGLDINDIQYVINFDTPP-----TCTDYIHRIGRTG 492 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G + + ++ K + + E K+ + Sbjct: 493 RAGKQGTSYTLLTEENGAIVKDLISSL----------EVINHEVDPKLHKMQQWWIQNRT 542 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMS 628 AK + + + + +N Sbjct: 543 KAKPRQRPQTRRFKNDHYNNRRNRHY 568 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 66/359 (18%), Positives = 112/359 (31%), Gaps = 40/359 (11%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G++ S + P L D+L + + + + + + M + Sbjct: 108 GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAI 167 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 V F + QT+ SAT SG D + Sbjct: 168 DDVIR-----------------FAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDST 210 Query: 420 D--PIIEVRPVATQ---VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 D P IE + T LL + +V TK+ + + + L E G+ Sbjct: 211 DALPPIEQQFYETSSKGKIPLLQRLLSLH-QPSSCVVFCNTKKDCQAVCDALNEVGQSAL 269 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH D++ +R + + G VLV ++ GLD+ + LV + Sbjct: 270 SLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE-----LAWDPEV 324 Query: 535 LIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI--------- 584 + IGR AR +G AI + A I + + + Q I Sbjct: 325 HVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMAT 384 Query: 585 --TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G K+ LG G + V P +V + + + +L+G Sbjct: 385 LCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQG 443 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 27/277 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + M A + + Sbjct: 152 TPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILA---------------- 195 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLL 436 QT+ SAT E + + D V + + + Q + L Sbjct: 196 -RVPKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLP 254 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + LV T TKR A+ + + L+ G +V +H+D +R + R G+ Sbjct: 255 LLMALLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQ 314 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 + VLV ++ G+D+ E+ V D + +GR AR +G+A + Sbjct: 315 YRVLVATDIAARGIDVAEIGHVVNFDLP-----HVPEDYVHRVGRTARMAASGRASAFAS 369 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + + I R + + EH L + Sbjct: 370 PEELDLLRDIERLTRAPIPRAEVPREHATFQAELQRA 406 >UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT4_9PLAT Length = 548 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 74/418 (17%), Positives = 134/418 (32%), Gaps = 60/418 (14%) Query: 223 RLSLFD--PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV--LLENN 278 R+ +D + + + P + + + K +L + +L Sbjct: 141 RIGKYDLMASSQTGSGKTLAY-VLPIVNRILNSYPKLAMNTLAKSDLNIQCPSALVLVPT 199 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS-----GRGPGEPPPTLFDYLPADG 333 + L +Q L + + G +N SR + P L D+L Sbjct: 200 RELVQQILLEFNKMLYRCFPRAVGVYGGQNRSRQIHELSKGCHFMIATPGRLIDFLDEGM 259 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 L + V + + M + + + + + L QT+ S Sbjct: 260 LRMDHCHSVVLDEADRMLDMGFEHQIRKILSNP-------DYGMPQPSGDGLPRQTVLFS 312 Query: 394 ATPGNYELEKSGGDVV--------------DQVV-------------------RPTGLLD 420 AT L+ + D VV P ++ Sbjct: 313 ATFPPSVLQIGRSFLRGNRCISFSVKQSEDDPVVPAWGEALAPTHGSKKIIGQIPEKIVQ 372 Query: 421 P--IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 I+E ++V +L+E+ Q +E +LV TKRM E L +L + G + LH Sbjct: 373 KMKIVEKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFHLYKSGLKCGRLHG 432 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + R +R LR G +VLV ++ GLD+P + V G + I Sbjct: 433 GMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVVN-----VGLPTNLDDYIHR 487 Query: 539 IGRAARNVN-GKAILYGDKITPSMAKAIGETERRR--EKQQKYNEEHGITPQGLNKKV 593 +GR R G A+ + + + R+ + Q + E Q + + Sbjct: 488 VGRTGRFGQCGLALTCVFSDSIHGQRELIHDIRQVAGKYAQDFPTELTAPKQSRRRAI 545 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 90/332 (27%), Gaps = 31/332 (9%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G++N P L D + + + + M Sbjct: 108 GGISYGLQNRMFSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDI 167 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL- 418 + + Q + SAT + + + + V Sbjct: 168 RKIYN-----------------ATSKKQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPD 210 Query: 419 ------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + +I + +L + + + ++ T TKRMA+ L++ L + Sbjct: 211 VSGHKNIKQLIYFADNQSHKQQMLDHFIKNDEVT-QAIIFTATKRMADQLSDQLYHSDIK 269 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH D+ R + I + E +LV +L G+D+ +S V D + Sbjct: 270 TSALHGDMSQGSRTKTINRFKRNETKILVATDLASRGIDVKNISHVFNYDMPRF-----A 324 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 I IGR R N G AI + I + + + Sbjct: 325 EDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIERFTNLKIEIASIPGMEATILKEAKA 384 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 K ++ + V Sbjct: 385 PKRKSKGRSFVKKGKVFKNEANAKKRIRSKPV 416 >UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax=Theileria RepID=Q4UBV5_THEAN Length = 797 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 77/222 (34%), Gaps = 13/222 (5%) Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G D + + + QT+ SAT + + + D + G + E Sbjct: 484 GTTSLGGADTVTGDTVKEKKILRQTVMFSATFPKEIQQLAREFLNDYIYLAVGRVGSTNE 543 Query: 425 -------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 ++ L+ ++ + VL+ TK+ A+ + YL + +H Sbjct: 544 FIKQRLLYADQDQKIKYLIKLLKDNTNLGGLVLIFVETKKRADLIEGYLLSENFKAVNIH 603 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 D +R + + + G ++V ++ GLD+ ++ V D + + Sbjct: 604 GDRSQEDREKALSLFKAGVRPIMVATDVAARGLDISNITHVINCDLP-----TNIDDYVH 658 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 IGR R N G A ++ + K + + ++ Sbjct: 659 RIGRTGRAGNIGIATSLVNESNRPILKDLLLLLQESNQEIPI 700 >UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJP8_ENTBH Length = 443 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 110/357 (30%), Gaps = 37/357 (10%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + P + + + + I LA R++ + + E + + G Sbjct: 83 LVPAYIHAADQPSLREGDGPIVIVLAPTRELATQIGNVATELSQLKIFNHLKPLCVYGGA 142 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + + P L D + + + + + M + Sbjct: 143 NIFPQKKALVNGIEILIATPGRLIDLHNQGFCPLNRCTFLVLDEADRMLDMGFEPQLN-- 200 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG---- 417 + QT+ SAT + D + G Sbjct: 201 ---------------QIIPKINSHRQTLMWSATWPKEVKSLAYRYTSQDAIQVTVGDEEL 245 Query: 418 ----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ +E+ + LL ++ + RVL+ K + L +L E+ R Sbjct: 246 KVNEKIEQRVEIVSNNDKEKKLLYTLQDF--RDARVLIFCNKKSTCDKLERFLLENRFRG 303 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH D R I + + G +L+ ++ GLD+ ++ LV D + Sbjct: 304 VALHGDKSQHVRDVIFDNFKKGRDPILIATDVAARGLDVKDIHLVINYDLP-----TNLE 358 Query: 534 SLIQTIGRAARN--VNGKAILYGDKITPS-MAKAIGETERRREKQQKYNEEHGITPQ 587 + +GR AR GKA+ + S +AK E ++ +E I P+ Sbjct: 359 DYVHRVGRTARGTAKEGKALTFFSLEEDSGLAKRFIELLKKGNVTIP-DELLNIKPK 414 >UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA helicase) n=6 Tax=Sphingobacteriales RepID=Q11UI8_CYTH3 Length = 437 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 136/387 (35%), Gaps = 14/387 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL-GYCSGIENYSRFLSGRGPGEPPPTL 325 L K++ N L+ L + +++ ++ G+ I S + G G G Sbjct: 57 LPILHKIIESNTDSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQ 116 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +V+ + Q+ G + + L E L + ++ + Sbjct: 117 RKALTDGANIVIATPGRLLAQLQSGTANLKQIKHLVLDEADRMLDMGFYDDIVRVISYLP 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----IIEVRPVATQVDDLLSEI 439 QTI SAT + + D + P Q + L+ I Sbjct: 177 TERQTIMFSATMPTKMRALANKLMKDPQQINIAISKPAEGILQQAYLVYEEQKNKLIKHI 236 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 N +++ + TK + L L G ++ HSD++ ER EI+R + + + Sbjct: 237 LSSGNFN-SIIIFSSTKEHVKKLERDLSNMGFSLKGFHSDLEQEEREEIMRAFKSRQLQM 295 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKIT 558 L+G ++L G+D+ + LV + + I I A G AI + Sbjct: 296 LIGTDILSRGIDIDGIDLVINAEVP-----GDAENYIHRIGRTARAATTGTAITFISDTD 350 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 I R ++ K E G P +K G + K+K+ +G +RP Sbjct: 351 QYKFLQIENLIGREIEKLKIPIEIGEGPAYEPEKKPKYNNKGFSNNKSKSGSKGSNRPTP 410 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + P+ P ++ I + + + Sbjct: 411 KEHSKPVHREPSGIKHTIVKKQNPPQE 437 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 119/423 (28%), Gaps = 20/423 (4%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F++ + E A + + + L + Sbjct: 43 ASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRE 102 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-I 347 + + + I++ + G + L ++V + Sbjct: 103 LANQVADNIKQFSQYLPIKSGVVY-----GGGKMASQTKMLKQGLDVLVATPGRLLEHLA 157 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + L E L K QT+ SAT + + Sbjct: 158 LRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLANQL 217 Query: 408 VVDQVVRPTGLLDPI------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + + +LLSE+ ++VLV TK A Sbjct: 218 LKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIG-VNNWQQVLVFAGTKESANT 276 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L + L+ G + H D R + + G+ VLV ++ GLD+P+++ V Sbjct: 277 LAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVN- 335 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + +GR R +G AI + I + R+ ++ Sbjct: 336 ----FHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLIERKFERIVAPG 391 Query: 581 -EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 E ++ + K + ++ V+ ++ + + + + +++ Sbjct: 392 YEFNRLEASEYQEATVKRDSKNRYRAAQEKNQNLAKKDVKIKSLSKNKTARTNSKYNNKI 451 Query: 640 EGL 642 + Sbjct: 452 QKK 454 >UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY2_METPP Length = 516 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 61/356 (17%), Positives = 101/356 (28%), Gaps = 18/356 (5%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + P H + Q + L + L + Sbjct: 116 VSSQTGSGKTAAF-LLPVLHRLLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMR 174 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-QI 347 L + R + G LFD LVV + Sbjct: 175 GVGEALRAEAKQHPLRDAARGLRIATVVGGMPFGKQLFDL--RGAQLVVATPGRLLDLHS 232 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 G R D + + E L + A QT+ SAT + + Sbjct: 233 RGQIRLDATQVLVVDEADRMLDLGFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKL 292 Query: 408 VVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + + LL + A +++ V V T+ E Sbjct: 293 MRSPGRLELATAHDVHSDITQTLHWADNMGHKQALLEHWLRDAEVDQAV-VFASTQVDTE 351 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + E L++ G LH + R ++++R G VLV ++ GLD+P +S V Sbjct: 352 AIAEALQQQGHSAVALHGAMPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVIN 411 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 G + IGR R G AI + +AI R+ + Sbjct: 412 -----FGLPMKAEDYVHRIGRTGRAGRSGTAITIAEHRERGKIRAIEAFTRQPIEA 462 >UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0CUL6_PARTE Length = 604 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 116/407 (28%), Gaps = 65/407 (15%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P ++ + R I ++ ++ + Sbjct: 187 AFLLPAIVHILAQARSHDPKCLILAPTRELT------LQIYDQFQKFSVGSQLYAACLYG 240 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G I+ + P L D L + S + + + M + Sbjct: 241 GQDRYIQKSQLRKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRMLDMGFEPQIR 300 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL 419 K + QT+ SAT + + + V G + Sbjct: 301 -----------------KIVDQIRPQRQTMLFSATWPKEVQKLALDFCKQEPVHIQIGNV 343 Query: 420 D--------PIIEVRPVATQVDDLLSEI----------------RQRAAINERVLVTTLT 455 + I+ V + I + ++++L+ T Sbjct: 344 ELTSNRMIKQIVYVMKAIDKNQRYNQTIDGANIYTRSSISLLLYLLKDIAHKKILIFCST 403 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ + L + L+ G R LH D ER ++ R G L+ ++ GLD+ ++ Sbjct: 404 KKGCDQLQKTLDREGIRCLALHGDKKQTERDYVMSHFRNGRSTALIATDVASRGLDIKDI 463 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL-YGDKITPSMAKAIGETERRRE 573 +V D + + IGR R G++I + MAK + E R + Sbjct: 464 EVVVNYDMP-----KVIEDYVHRIGRTGRAGAIGQSISFFASDEDVRMAKDLVEILRESQ 518 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 Y + ++D G N + R + +P Sbjct: 519 NDIPYE----------LRSLIDQNTKGNNYNPYRRWNNSGQRHMPQP 555 >UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K6A2_SCHJY Length = 672 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 88/274 (32%), Gaps = 23/274 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L ++ V + + M D+ + Sbjct: 389 TPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPSGHDDDEAMVAG 448 Query: 381 E------FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP 427 E A QT+ SAT + + ++ G ++ +E+ Sbjct: 449 EDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRVEQRVEMIA 508 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L EI ++V KR E L + L G RV LH +R Sbjct: 509 DDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRER 568 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 I LR D+LV +L G+D+P VSLV + +S IGR R Sbjct: 569 AIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNM-----AKSIEDYTHRIGRTGRAGK 623 Query: 547 NGKAILYG----DKITPSMAKAIGETERRREKQQ 576 +G AI + + + + ++ ++ Sbjct: 624 HGTAITFLGPEDTGVYYDLRLMLSKSANSHIPEE 657 >UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=2 Tax=Fungi/Metazoa group RepID=PRP5_BOTFB Length = 1151 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 117/385 (30%), Gaps = 26/385 (6%) Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + + R + T+ +++ R + Sbjct: 603 GKTIAFLLPMFRHIRDQRPLKGSDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAY 662 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSAL 372 G + D L ++V I G + R L E Sbjct: 663 GGAIIKDQIAD-LKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGF 721 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEV 425 + + +K QTI SAT + + V G + I+EV Sbjct: 722 EPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEV 781 Query: 426 RPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 R + LL + + +E R L+ + A+DL + L G +H D V Sbjct: 782 REEKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 841 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R I D + G +++ ++ GLD+ ++ LV DA + GR Sbjct: 842 DRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNH-----LEDYVHRAGRTG 896 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G A+ + + + I + + Q+ + + K D + G Sbjct: 897 RAGNTGTAVTFITEEQEQYSVGIAKALE--QSGQEVPDRLN----EMRKSYKDKVKSGAK 950 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDM 627 + +G+G R E + Sbjct: 951 KESSGFRGKGLERFDAEREATKARE 975 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 97/337 (28%), Gaps = 14/337 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSA 371 ++ G D L +++ I ++ L E L Sbjct: 104 VTCVVGGVSYNPQIDSLRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMG 163 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------V 425 + QT+ SAT + + + + V + + Sbjct: 164 FLPDMRRIVAACPTQRQTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRI 223 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +DLL + R++V T+ + L + G V +HSD +R Sbjct: 224 PVDHRHKNDLLIALLNERG-GTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQR 282 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I L G+ D+LV ++L G+D+P V+ V LD + IGR R Sbjct: 283 KRAIEALEAGKCDILVATDVLARGIDIPNVNYVVNLDMP-----DQVEDYVHRIGRTGRA 337 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G AI + ++ + I + + + + Sbjct: 338 GEAGCAISFVTPENKAILRDIQKLIGKDIPEMSVESFDSSASDNALAAKATRANAQNDPE 397 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 A KSR + Q+ + G Sbjct: 398 LATAAREDKSRKKAKSSRSSRREHNTEDQRAGGQQRG 434 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 111/349 (31%), Gaps = 15/349 (4%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + +++ R G D L A +VV + + Sbjct: 111 TRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTAD-LRAGCEIVVATVGRLLDHVKQ 169 Query: 350 M-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 ++ L E L + K + QT+ SAT + + + Sbjct: 170 KNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSPPIRKLAQDFM 229 Query: 409 VDQVVRPTGLLDPI---IEVRPVAT---QVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + +E +A + LL + +N +V+V TK+ + + Sbjct: 230 HTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERLIVDLHMN-QVIVFCKTKQSVDQV 288 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 T L + +H D R+E + + G VLV ++ GLD+ E+ V + Sbjct: 289 TRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIAELPFVINYE 348 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + IGR R +G AI DK M +AI E ++ Sbjct: 349 LP-----TQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEAIKELTGSDLNVERIEGF 403 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 N+ + + N ++++ R K + + + Sbjct: 404 EPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYANKSDKNSKKAEE 452 >UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AF33_9CRYT Length = 590 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 60/340 (17%), Positives = 110/340 (32%), Gaps = 41/340 (12%) Query: 239 PRFTIYPKTHYVT-PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 + P I + + + R L N + ++ + ++E Sbjct: 186 DGLILCPSRELALQTTSIIEHFVSFLSKSKINRPGTLKRNREWEYSEKEKSNSDGNVEDY 245 Query: 298 NELGYC-------------SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 N Y +N + P L D L + + + + Sbjct: 246 NRTYYPLLNVICLIGGESAREKQNIIQRQGVHMIVATPGRLADMLRKKKVTLYQCRYFCM 305 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + DN + QT+ SAT E + Sbjct: 306 DEADRLTEAGFEEAVRYI---------FDNFHER--------RQTVLFSATMPQKTQEFT 348 Query: 405 GGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 +VD +V G +++ Q L ++ RVL+ K+ + Sbjct: 349 RTALVDPIVVNVGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAPRVLIFCENKKDVD 408 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ EYL G + +HS + +R + + RLG DVL+G ++ +GLD P + V Sbjct: 409 EIHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVIN 468 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 D KE + + IGR R + G + + D P Sbjct: 469 YDMPKE-----IENYVHRIGRTGRGDSVGVSTTFIDNSLP 503 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 111/354 (31%), Gaps = 18/354 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNR 375 G D + +VV + + + + L E L + Sbjct: 116 YGGSSYNRQIDLIQRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDD 175 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVAT 430 + + QT+ SAT + + + T D E + Sbjct: 176 INEIFSYLPSNRQTLLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEE 235 Query: 431 -QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + DD + + A ++ +V TK + L+ L G LH D++ +R +I Sbjct: 236 SERDDAIIRLMD-AEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVI 294 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + + VLV ++ G+ + +S V + S + IGR R G Sbjct: 295 KGFKNNGVKVLVATDVAARGIHVDNISHVFNYHIPFD-----PESYVHRIGRTGRAGTKG 349 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 KAI + + I ++ + + +N K + NI Sbjct: 350 KAITLLTPLEFKELQRIKTKVGTTMTHAFVPSKNDL--RAINLKSIATSIEEHNIYDEAH 407 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE--FEEAAQIRD 660 + + ++ + + L ++ + + A+ L E A + RD Sbjct: 408 QILDMLKEDIDEPTIMFKLVSMILDRQAIQGPNSIGIPAEKLAAILERADKRRD 461 >UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales RepID=A2U4F0_9FLAO Length = 411 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 16/272 (5%) Query: 329 LPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I Q+ G + L E L N K E+ Sbjct: 122 LAKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKK 181 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIR 440 QT+ SAT E S V + + ++ P + D L +R Sbjct: 182 QTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLR 241 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 IN ++++ TK + L + L ++G V +H D R + I D + + +L Sbjct: 242 N--TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASIL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ G+D+ V + D + IGR R +G A + Sbjct: 300 IATDVAARGIDITNVDAIINFDIP-----NVPEIYVHRIGRTGRAGKSGIAFSFCSPDEN 354 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + +I + K + + P+ K Sbjct: 355 NYIASIENLIEKSIKVIEDHPYPINKPKHTKK 386 >UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9N3Z4_POPTR Length = 775 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 65/349 (18%), Positives = 111/349 (31%), Gaps = 22/349 (6%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 I R + P R + K L E+ +L QR T R L + Sbjct: 158 PIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVL 217 Query: 297 MNELGYCSGIENYS----RFL--SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG- 349 +E +L G T L +VV I + G Sbjct: 218 APTRELAKQVEKEIKESAPYLSSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLKGN 277 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + L E L + E Q++ SAT + + + + Sbjct: 278 SLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLD 337 Query: 410 DQVVRP-TGLLDP-------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + G + + + A +LS++ A + ++ T TKR A++ Sbjct: 338 NPLQIDLVGDQEEKLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADE 397 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 ++ L LH DI +R + R G+F VLV ++ GLD+P V L+ Sbjct: 398 VSMALTNT-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHY 456 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 + + + + GR R G AIL +++ Sbjct: 457 ELPND-----AETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDA 500 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 105/332 (31%), Gaps = 35/332 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D +++ + + + + + L Sbjct: 131 TPGRLIDLAERRSVVLDEVEMLVLDEADRL-----------------LALGFAEELNTIL 173 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD------ 434 E Q + SAT + + + D V +E D Sbjct: 174 EMLPEGRQNLLFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTG 233 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + + ERVLV +KR AE++T L++HG + LH ++ +R + + Sbjct: 234 LLRHLLETEGW-ERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQ 292 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + VL+ ++ G+D+ + V D RS + IGR R +G A+ + Sbjct: 293 SKVRVLMATDVAARGIDIAGLPCVVNYDLP-----RSAADYVHRIGRTGRAGESGLAVNF 347 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + I + R ++++ G P+ N + D + + + K Sbjct: 348 ITDDKDAHFRLIEKKNGLRLERER---LEGFVPENWNPE--DPAKGKAPVKGKRPSKKDK 402 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 R + L + Sbjct: 403 LRKAAAGKARGSGGNKDVSSPWARALRKATGE 434 >UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LZN9_9ALVE Length = 580 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 92/297 (30%), Gaps = 39/297 (13%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + + P L D+L + +++ I + M Sbjct: 292 GGQPKRQQERELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEM--------- 342 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGL 418 L + QT+ SAT + + + V G Sbjct: 343 --------LALGFGRQLDSICSAIRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGS 394 Query: 419 LD-----PIIEVRPVATQ--------VDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLT 463 + + +D+++ ++ N + L+ TKR + LT Sbjct: 395 QSLAACHQVTQDFVFLEHPGMKQKEFMDNVIPKVWNVLESNGEAKALIFCNTKREVDQLT 454 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + L G +HSD + ER + R G+ +LV NL+ G+D+ + V D Sbjct: 455 QLLRSQGYNAVCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDM 514 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 ++ + IGR AR +G +I AK + + + Sbjct: 515 P-----QNVEEYVHRIGRTARAGAHGTSITLFTAQEGRHAKDLVDILNEAGQNIPEF 566 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 98/298 (32%), Gaps = 34/298 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + H+ + + M L +K Sbjct: 134 TPGRLLDLMEQRAIDLRETRHLILDEADRM-----------------LDMGFVRDVMKIV 176 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVD 433 Q++ SAT + S + + V + + P + Sbjct: 177 GKCPDDRQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKH 236 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ + R++V T TK A LT L++ G + +H + R + + + Sbjct: 237 WLIDFV--SKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQ 294 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 GE DVLV +++ G+ + ++S V D +E S + IGR AR G+AI Sbjct: 295 DGEIDVLVATDIVARGIHVDDISHVVNFDLPEE-----PESYVHRIGRTARAGRSGQAIA 349 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 D + K I + Q ++ + D G + + Sbjct: 350 LVDPSERAKLKQIIKLTGIDLTPQA--TDYTVNVLAGELDADDGKRRGPRNQQPRNGR 405 >UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=Q83N19_TROWT Length = 1291 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 85/612 (13%), Positives = 166/612 (27%), Gaps = 132/612 (21%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 + +E + G A G +A+++ D+ +V+ P++ + Sbjct: 44 LNLLAAIEAFIPTGFAA---TACPGGFSACKVASLVGDVD-SLLVILPSEDAC--FTDTL 97 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-----E 132 + + PE+ + F P DT + + S + R+ A + Sbjct: 98 RTYLPESIILNF-------------PEWDTLLHEQISPSPERVSARMEALHKISLFRKNN 144 Query: 133 RR-------------------------DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMII 167 +R +VVVAS+ A L+ G Sbjct: 145 KRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVASIKAFMQPII-SDGNPPCLYFHTGGEY 203 Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 + I L + Y+R D RG F +RG ++DI+P ++ +R+E F ++E + F Sbjct: 204 ELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYPP-TEKHPIRIEFFGRQLESMRHF 262 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + + A + + + R Sbjct: 263 RVSDQRSIGPYVS----------------NNAHVGMFAQYQDNSVCKCNVSLSSNPHRCA 306 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP------PPTLFDYLPADGLLVVDESH 341 + E + + P E P +L ++P +VV + Sbjct: 307 SHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQINNITPKSLLHFMPGKSTVVVIKCE 366 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 +I + +R E + R + T L Sbjct: 367 QLTSKIEQLINTNREFSEAFCTPDAFSATNKYARNNHDGDNTLDGIAEKINYYTL--EGL 424 Query: 402 EKSGGDV----VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 D+ D + +I P + + IR + +V T Sbjct: 425 RHFAADLGIGWTDLSGFNSEDEKSLITANPDFSGY-SVFDHIRNLQKSGWQ-IVLASTN- 481 Query: 458 MAEDLTEYLEEHGERVRYL-----------------------------------HSDIDT 482 + L+E+G L H Sbjct: 482 --NRVYPTLDEYGIDYLILSANTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGA 539 Query: 483 VERMEIIRDLRLG-----------EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 ++ I + V+V + ++EG +P S I + + G Sbjct: 540 QQKSYISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHELFGKTTL 599 Query: 532 ERSLIQTIGRAA 543 +++ I R A Sbjct: 600 QKA--PRISRRA 609 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 99/306 (32%), Gaps = 24/306 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + +SATP LE S + + T + + + V Sbjct: 874 EHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHV 933 Query: 429 ATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 D +++ +R+ +V + + LE+ R + H+ + Sbjct: 934 GPYRDKQVIAAVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERML 993 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + D G++D+LV ++ GLD + + I A+ G + L Q GR R Sbjct: 994 EKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQ----LHQLRGRVGR- 1048 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G Y S K +T +R + N G G + D+ G Sbjct: 1049 --GTKRAYAYLFYTSTLK---DTAYKRLEAIARNNHLG---AGAQIAMKDLELRGAGSLL 1100 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM-MQHAQNLEFEEAAQIRDQLHQ 664 A+ +V D+ + + I +G + LE A I Sbjct: 1101 GHAQSG-------HIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPVDASIPKAYVD 1153 Query: 665 LRELFI 670 L I Sbjct: 1154 SERLRI 1159 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 30/264 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DYL + + + + ++ M L Sbjct: 127 TPGRLMDYLHDRTINLQGVEILVLDEVDRM-----------------LDMGFLPVVKDII 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 + QT++ SAT + + + G+ + E A Q + Sbjct: 170 QRCPRQRQTLFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFE 229 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + R + VLV + TK A+ + L+ V LH++ +R+E + + Sbjct: 230 LLEALLARTDFD-SVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKS 288 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+++++V ++ G+D+ VS V D + IGR R G A Sbjct: 289 GKYEIMVATDIAARGIDVAGVSHVINYDVP-----EKPEDYVHRIGRTGRAQAVGDAFTL 343 Query: 554 GDKITPSMAKAIGETERRREKQQK 577 + I ++ + + Sbjct: 344 VTPENAHDVRDIERFIGQKIPELR 367 >UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Desulfovibrionales RepID=B8DPF5_DESVM Length = 1197 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 102/307 (33%), Gaps = 24/307 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L+ S + + V T + + Sbjct: 770 EQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATAL 829 Query: 429 ATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVER 485 + + L +I + A +V + E + E++ R H + E Sbjct: 830 IERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGEREL 889 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + GE DVLV ++ GLD P + + + A G + L Q GR R+ Sbjct: 890 EDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRS 945 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y + + + E R+R + E G + D+ G Sbjct: 946 DRQ---AYAVFVVSDAER-LPEQARQR---MRIILELDYLGAGFQVAMEDLRLRGAGNIL 998 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ--HAQNLEFEEAAQIRD-QL 662 + + + +D+ + L++++ L+G + L AA I + + Sbjct: 999 GEVQSG-------HMTRLGLDLYLEMLEEEVARLKGAPPRESVEPELNIGLAAHIPETYI 1051 Query: 663 HQLRELF 669 RE Sbjct: 1052 GDARERL 1058 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 112/661 (16%), Positives = 205/661 (31%), Gaps = 84/661 (12%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPE 99 +G G +A + R +++ + A+ F PE + + V+ + Sbjct: 47 SGMGGAARLALALMRAGRDVVMVVRDAAELAEARALTTLFSPELSGTDPAVTQARWDAQW 106 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDP-DLYLKM 157 P + R+++ A+ R ++ SV + P D++ Sbjct: 107 IVFPQ-----HPAGTRGRGAWAARMASLYALSRREHPRGIIISVDNLLPKLPPVDIFEHH 161 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L G + +L + + + R + G RG+++DIFP + LR+E F Sbjct: 162 ELRLARGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEK-PLRLEFF 220 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + +E + LFD + + ++++ F + P V E +E A R K L ++ Sbjct: 221 GDTLEDIRLFDATSQRSLASLEEFRLLPVAPVV--------GCREYREAAARRWKQLRKD 272 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++ E L E + D+LP D + ++ Sbjct: 273 G--------------VIDGEQAAALARMAEGEVTGLLPGAWYENATWMEDWLPRDAVWLL 318 Query: 338 DESHVTIPQ-----------IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + + Y R R+ + + R FE L Sbjct: 319 PDRADLSTALEAARTNWEALLDRQYDEHRLRQPRPLVLRDADEAQAAWRGRSVAHFERLV 378 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 L P P L++ +RQ + Sbjct: 379 MGVERTGVDLPERRLHAFRDLFAATPSVPVDEDRP----------WQRLVTALRQWTSER 428 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V+++ + R + E+ G R +S D ++ R G D L N+L Sbjct: 429 RQVVLSFASDRSRRKFLKLAEQDGVRPNLRYSPAD-RGLYALVAPFRAG-ID-LAWDNVL 485 Query: 507 REGLDM--------PEVSLVAILDADKEGFLRSERSLIQT---IGRAARNVN----GKAI 551 G D+ P V A L DK L L+ +GR G A Sbjct: 486 VIGEDVLQPKADRQPRVPTGAFLGLDKYDDLSPGDLLVHRDYGVGRFGGLHRMDLGGVAN 545 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + +R Q ++ P + LG + + Sbjct: 546 DFLLLEYAGEDRLYLPVDRLSLIQ-RFKGGDDSVPS--------LDKLGGSGWRACKDKA 596 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEE----AAQIRDQLHQLR 666 K+ + D V M K + + L L + + FEE A I+D L + Sbjct: 597 RKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFGFEETPDQARAIQDVLDDME 656 Query: 667 E 667 + Sbjct: 657 K 657 >UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=Viridiplantae RepID=RH3_ARATH Length = 748 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 16/269 (5%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV I I + L E L + E Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVATQVDDLLSEI 439 Q++ SAT + + + + + + G D + + +T +LS++ Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 A + +V T TKR A++++ L LH DI +R + R G+F V Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRERTLNAFRQGKFTV 403 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GLD+P V LV + + + + GR R G AIL Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPND-----PETFVHRSGRTGRAGKEGSAILMHTSSQ 458 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQ 587 +++ + + Sbjct: 459 KRTVRSLERDVGCHFEFISPPTVGDLLES 487 >UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=39 Tax=Leotiomyceta RepID=PRP28_ASPNC Length = 810 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 89/291 (30%), Gaps = 23/291 (7%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV---------EYGFRLPSA 371 P L D + L++ +V + + M + + Sbjct: 507 TPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAEN 566 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIE 424 + QT+ +AT + + + G ++ +E Sbjct: 567 PLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVE 626 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + L +I ++V KR + + +++ G LH + Sbjct: 627 MIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQDQ 686 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + +R G DVLV +L G+D+P+VSLV S S IGR R Sbjct: 687 REAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVN-----FNMATSIESYTHRIGRTGR 741 Query: 545 -NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 +G AI + + + + + + EE +K Sbjct: 742 AGKSGVAITFLGNEDADVMYDLKQMLMK-SPISRVPEELRKHEAAQSKPTR 791 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 107/333 (32%), Gaps = 24/333 (7%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNR 375 G + ++V + + G G + L E L Sbjct: 105 YGGSSYSRQIGLIEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLED 164 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPV 428 + + QT+ SAT + + + D Sbjct: 165 IEEIFTYLPKERQTLLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVIN 224 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + DD + + E+ +V TK+ + L+ L G + LH D++ +R + Sbjct: 225 EYERDDAMIRLLDALEP-EKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESV 283 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 I+ R + ++LV ++ GL++ ++S V + S + IGR R Sbjct: 284 IKAFRSSQIEILVATDVAARGLNVADISHVFNYHMPFD-----PESYVHRIGRTGRAGKK 338 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G AI I + IG+ + + + + L K DI Sbjct: 339 GTAITLVTPIEFHSMQRIGKKVGSKIEHRIVPNLRDVKENKLIKIADDI---------KN 389 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 A+ + ++ MDMS AL+ + L+ Sbjct: 390 AELNENASKLLAILEEEMDMSQIALKLLSNLLK 422 >UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EA42_9CHLO Length = 754 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 59/394 (14%), Positives = 123/394 (31%), Gaps = 38/394 (9%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P Y+ + + + A E + +EE+ + + + + + Sbjct: 375 AFVVPMLAYIQELPPMTDEVAAL-GPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVV 433 Query: 301 GYCSGIENYSRFLS-GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G S E + P + D L ++ +++ + + M + Sbjct: 434 GGQSIEEQGFKLRRGCEIVIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQV 493 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQ------------TIYVSATPGNYELEKSGGD 407 + S EE E + Q T SAT + + Sbjct: 494 I-----SVMDSMSAESLKPEEEAEKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKY 548 Query: 408 VVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + V G L+ I++ + L E+ + + ++ TKR+ + Sbjct: 549 MRNPAVVTIGSAGKTSDLIKQIVQWTTSNQKPAQL--ELVLSQYPDTQAIIFVNTKRVVD 606 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ + G V +H +R E +R + GE+D+LV ++ G+D+ + LV Sbjct: 607 HVSNLCFKMGYSVGAIHGGKSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVN 666 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + + IGR R G A+ + + + E Sbjct: 667 YEMPL-----VIENYTHRIGRTGRAGRQGTAVSFLTSEDTDVMYELKELL--TNSGNHVP 719 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 E K + D A G + + + G Sbjct: 720 GELANHQAAKVKPMRD--AKGNKMTRDQYMGMQD 751 >UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL15_THEYD Length = 1042 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 105/301 (34%), Gaps = 24/301 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + I ++ATP L+ + D V T + + V Sbjct: 630 EQKFGVIHKEKIKEKYPKVDLITITATPIPRTLQIGLSGLWDIFVIQTPPKERLAVKTFV 689 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVER 485 + + ++ E I + ++ E + +++ R H + Sbjct: 690 IQENELIIKEAIEKEIQRGGQIYFLHNRIHDIELVKSKIQKLVPMARIGVAHGRMKEKML 749 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 +I+ D G+ D+L+ +++ GLD+P V+ + I A G L Q GR R+ Sbjct: 750 DKIMLDFIYGKIDILLCTSIIASGLDIPNVNTIIIDQAQTFGLS----DLYQIRGRVGRS 805 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + P + + E ++R K + E G + + D+ G Sbjct: 806 YRQ---ANAYLVIPPE-EILSEDAKKRIKAIQ---EMSYLGAGFHIALRDLEIRGAGELL 858 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ--NLEFEEAAQIRDQLH 663 + + D+ + L + + E++G ++ + ++F A I ++ Sbjct: 859 GVEQSGVNR--------LGFDLYIEMLNEAVKEIKGEVLPALKLPEIKFSIPAFIPEEYI 910 Query: 664 Q 664 + Sbjct: 911 K 911 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 88/231 (38%), Gaps = 36/231 (15%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 E ++++ ++ + ++ + + I + +V N+ AA+LY Sbjct: 16 LEEVKKITSLIKTNNE---IYNLSITSFSLFICF----YKNNFIVFEENEDQAAKLYAAF 68 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV 137 K F S+++ ++PS T R+ A +L R+ Sbjct: 69 KTFS---------SFFNTTDEIVFLPSKGT--------------ERMIAIFKILNERNKK 105 Query: 138 VVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 ++ +V + P + +++ G I++ + + L L Y++ + Q G F G Sbjct: 106 IITTVDSA--KIPPHI---ETINIKKGGTIEREFLAKNLINLGYSKVELVTQEGEFSEHG 160 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 V DI+ ++ R+E F +E+E + LF P T + I Sbjct: 161 WVFDIWGIG-EEYPARIEFFGDEIEEIKLFYPDTQRSFKDKNEIWIIQAEE 210 Score = 44.8 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 48/401 (11%), Positives = 107/401 (26%), Gaps = 51/401 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E +K + L + + + E + + + G Sbjct: 120 ETINIKKGGTIEREFLAKNLINLGYSKVELVTQEGEFSEHGWVFDIWGIGEEYPARIEFF 179 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + L D + ++ +E DN + F Sbjct: 180 GDEIEEIKLFYPDTQRSFKDKNEIWIIQAEEKEINNIELLELF--EFDNIFTVDKNFTNK 237 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +S P + + + +L R + Sbjct: 238 KFNIVKISHLPVKFSTKSVDAGDKTFYGLGILPNERS-----------SILDFPRNLKKL 286 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ + ++ AE + E L H +H + G++ + + Sbjct: 287 GIPIIFSISSRGKAETIKEVLFNHDIIAPLIH---------KNEIGTYSGKYAITISD-- 335 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 L+EG +L+ I D + G ++ + ++ K Sbjct: 336 LQEGFY--RENLMIITDFELFGEKTLKKKKL-----------------------AIQKLP 370 Query: 566 GETERRREKQQKYNEEHGI-TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + E ++EHGI +G+ ++ + + G P + Sbjct: 371 IDGLEINEGDYIVHKEHGIGIFRGIKRQKYE-GTEEDVLVLEYKDGDILYVPTWNIGKIY 429 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + I +L Q A+ E + I D+L +L Sbjct: 430 RYSAKEGFIPPIDKLGSNRWQKAKERERKRIHDIADKLIKL 470 Score = 42.5 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAED----LTEYLEEHGERVRYLHSDIDTVE 484 + + + + ++V V T + E + E ++ YL E Sbjct: 531 YGKTEVAMRASFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEAFPVKIEYLSRFRSEKE 590 Query: 485 RMEIIRDLRLGEFDVLVGINLL---REGLDMPEVSLVAILDADKEGFLRSER 533 ++I D +LG+ D+L+G +++ +D ++ L+ I + K G + E+ Sbjct: 591 IKKVIEDTKLGKVDILIGTHIIILKE--VDFFDLGLLIIDEEQKFGVIHKEK 640 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 59/394 (14%), Positives = 115/394 (29%), Gaps = 21/394 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + + L + L + + E + GI ++ Sbjct: 51 KTAAFGLGMLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGIN-----IA 105 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 G+ + L +V+ + + L E L Sbjct: 106 VLVGGKDLESQQKILKEGVDIVIATPGRVLEHVDKGLSLSHVEIFVLDEADRMLDMGFMK 165 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ 428 + QT+ SAT + + S + T + ++ Sbjct: 166 EIRRIHPILPKRHQTLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVD 225 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + LL+ I +VLV T TK A+ L L++ G + +H D R++ Sbjct: 226 TEKKAPLLAYIIGSRNFR-QVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKT 284 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + + + G+ VLV ++ GLD+ E+ V + + +GR R Sbjct: 285 LNEFKEGKIKVLVATDIASRGLDIEELPFVINYELPS-----IPEDYVHRVGRTGRAGRD 339 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G AI D K I + + Q+ G P +++ ++ K Sbjct: 340 GMAISLIDIYEKFDIKDIEKLIGMKIPQEII---AGFEPDPTIRRLDQDELKLKSEHKKV 396 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + E + K + K + Sbjct: 397 EVKHERKPRKKEDGSKKSANYKKPVTTKKRKTSK 430 >UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=3 Tax=Agaricomycotina RepID=PRP5_CRYNE Length = 1072 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 98/306 (32%), Gaps = 32/306 (10%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + +V+ I G + R + E + + +K Sbjct: 523 MKKGAEVVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVR 582 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 + Q + SAT + +V + G +D +EVR T+ LL Sbjct: 583 PSAQKVLFSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLE 642 Query: 438 EI-----RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + + + R L+ + A+DL L + G LH + V+R E I++ Sbjct: 643 ILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNF 702 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G+ ++V ++ GLD+ E+ LV DA + GR R G I Sbjct: 703 KNGDVPIIVATSVAARGLDVKELKLVINYDAPNH-----MEDYVHRAGRTGRAGNKGTCI 757 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + I + + KK+ D K +A G Sbjct: 758 TFITPEQERFSVDIVRALEASKAFIPDD----------LKKMSDSFLGKIKSGKARAAGS 807 Query: 612 GKSRPI 617 G S Sbjct: 808 GYSGKG 813 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 96/336 (28%), Gaps = 42/336 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M K Sbjct: 129 CPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIR-----------------KIM 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLL 436 Q + SAT + + + + P V PV+ + + L Sbjct: 172 SKLPQRRQNLLFSATMPDDIRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHLKNNL 231 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +LV T TK A++L L G + +L ++ +R + R G Sbjct: 232 LFKVLEQTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGS 291 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 F V+V ++ G+D ++ V LD + + IGR R G A + Sbjct: 292 FKVMVATDIAARGIDCDRITHVVNLDVP-----DTAETYTHRIGRTGRAGRSGSAFSFVT 346 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + I + + ++ + D N AK G + Sbjct: 347 RDDLRLMREIEKAVGYSIE---------------HRTLEDFDYDKPNTHPAPAKRGGGRK 391 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 P + + + + A + Sbjct: 392 PAADRKPAGERRPGRGRKPAEARDGDESRKPAGERK 427 >UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoeba RepID=C4LXN8_ENTHI Length = 722 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 37/354 (10%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R L E + + E Sbjct: 260 LKRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIR 319 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLS 437 Q + SAT + + + + + ++ I+EV +++ L+S Sbjct: 320 PDKQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIETKKKIERLIS 379 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++ R+++ T T++ ++L + L E LH ID ++R I++ + G Sbjct: 380 IVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIG 439 Query: 498 D-VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +L+ +L GLD+ + LV D + +GR R GKAI + Sbjct: 440 RTILITTSLCARGLDVKGLELVINYDCPNH-----LEDYVHRVGRTGRAGKRGKAITFIT 494 Query: 556 KITPSMAKAIGETE-------------------RRREKQQKYNEEHGITPQGLNKKVVDI 596 K ++ I + ++ + + G G + + Sbjct: 495 KEEERYSEDIVKALTLSGGSISKELNDMYEEWKTKKLFLETKEGKKGYGGNGFKFDIKEE 554 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + +N + ++ M + + I + + M+Q A + Sbjct: 555 ITTMENKIGGYMEEDIGGGIKLKERFEEKKMKEEIKESNIPKEKQEMVQKALQM 608 >UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Trypanosomatidae RepID=DDX17_TRYBB Length = 568 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 91/289 (31%), Gaps = 33/289 (11%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G + P L D+L + + +++ + + M + Sbjct: 210 GGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQV 269 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K QT+ SAT + + G Sbjct: 270 R-----------------KICGQIRPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGST 312 Query: 420 DPI----IEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERV 473 + + R + TQ E+R+ ERVLV KR A++L L G Sbjct: 313 ELQANKDVTQRFILTQEFAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRRWGYDA 372 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H D + +R I+ R LV ++ GLD+ ++ V D Sbjct: 373 MAIHGDKEQRQREFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPM-----QID 427 Query: 534 SLIQTIGRAAR-NVNGKAILYGDK----ITPSMAKAIGETERRREKQQK 577 + IGR R G+ + K ITPS+ K + R +++ Sbjct: 428 DYVHRIGRTGRAGGEGRCVYLITKKEAQITPSVLKELIGILERAQQEIP 476 >UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQY6_BDEBA Length = 473 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 115/318 (36%), Gaps = 20/318 (6%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 R P + D+L + LL+ + + + + M A + ++ R P Sbjct: 151 PRLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGP----R 206 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 + + F ++I + + +S ++ P L + + + D Sbjct: 207 QTMMFSASFGSNVESIAQLFMKPDVVMVRS-----EKAEAPVESLKQKVLFLDRSMKNDR 261 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL E+ A V+V T + E + YL+E+G +H + +R ++R R Sbjct: 262 LLDELN---ATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFRE 318 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 GE ++V +LL GLD+P V V D + IGR AR G+AI + Sbjct: 319 GEIRIVVATDLLARGLDVPHVDHVVNFDLP-----FQSEDFLHRIGRTARAGRGGEAITF 373 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 M I + ++ K + + K + A G A+ A G+ + Sbjct: 374 VTPSDTRMYAKIKGYLQG-AQEIKVDPTFAFIDRS-KKFDKNKPAKGNEPARRNAPGKPQ 431 Query: 614 SRPIVEPDNVPMDMSPKA 631 + P P K Sbjct: 432 AVKKAAPAGKPKSKGGKI 449 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 36/308 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M L K Sbjct: 130 TPGRLLDLVQQNVVKFNQLEILVLDEADRM-----------------LDMGFIRDIKKIL 172 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 Q + SAT + E + G V V + I + Sbjct: 173 ALLPAKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSA 232 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ I+Q ++VLV + TK A L + L + +H + R + + D + Sbjct: 233 LLIQLIKQEDW--QQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFK 290 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 GE VLV ++ GLD+ ++ V D + IGR R +G+A+ Sbjct: 291 SGEVRVLVATDIAARGLDIDQLPQVVNFDLP-----NVPEDYVHRIGRTGRAGASGQAVS 345 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + I R ++Q E G P + ++A G++ + Sbjct: 346 LVSSEEFKLLRDIERLINRVLERQ---EIEGFGPAHALPEST-LIAHGKDNKVKAVASQR 401 Query: 613 KSRPIVEP 620 K R +P Sbjct: 402 KHRSAGKP 409 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 114/402 (28%), Gaps = 15/402 (3%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + + L R + L + + E ++ Sbjct: 72 LLEGRDVIVQSQTGSGKTGAFLLPLFERLDPSRGQVQALILTPTRELARQISEAFEQMKT 131 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETL 361 R + G G L +V+ + I R + Sbjct: 132 GVSGAQSLRAVLVYG-GVRYGPQLKALEQGAQVVIGTPGRILDLIERGALRLGALQVLVF 190 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGL 418 E L + + + T SAT + + D + Sbjct: 191 DEADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALAREFLKDPAFVSLSTDRI 250 Query: 419 LDPIIEVRPVAT---QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 IE R + D L ++ E ++ TKR E L ++L+ +G Sbjct: 251 AAETIEHRYFIVPPMEKDRALVQLI-ELENPESAIIFANTKRDVEYLGQFLKNYGYNADA 309 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 + D+ +R I+ LR G+ +LV ++ G+D+ ++S V + D + Sbjct: 310 ITGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVP-----QDPEYY 364 Query: 536 IQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + GR R G I+ + + +AI ++ + + + V Sbjct: 365 VHRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPTPETVAERVAERAVA 424 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + + + P+VE L + Sbjct: 425 LLEDRYRETTSLDRERIARFVPLVEQLAQEEPELLAMLVDAL 466 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 92/289 (31%), Gaps = 15/289 (5%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPS 370 ++ G+ L +VV I I D R L E L Sbjct: 101 YILTVYGGQSIDRQIRSLERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSM 160 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPII 423 + + + T SAT E + V ++ I Sbjct: 161 GFIDDVKTILKKTPESRSTACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNI 220 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + P L + E ++ TK+ A DLT L+E G V H ++ Sbjct: 221 YMVPRGWSKRKALQPVL-EIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQS 279 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R ++ R G ++V ++ GLD+ +S V D + + I IGR Sbjct: 280 QRERLVHRFRDGRIKLVVATDIAARGLDVEGLSHVINYDLP-----DNSETYIHRIGRTG 334 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R GKAI + M + I R++ K + + L K Sbjct: 335 RAGKTGKAISIVESADRRMIRQIERKLRQKIDICKIPNRSEVEAKRLGK 383 >UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UPZ2_MONBE Length = 591 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 96/288 (33%), Gaps = 29/288 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + D ++ + + M A+D Sbjct: 127 TPGRLKDHLDKGTLKLTDIKYLILDEADRMLEQGFVE-------------AIDEIQKMTI 173 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQ 431 PQ I SAT ++ L + + V T +D + P + Sbjct: 174 AQSGGKPQMILFSATMPDFILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTER 233 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + ++ + + R ++ T TK+ A +L + + V+ LH DI +R ++ Sbjct: 234 RAVIADVVQMYSGAHGRTIIFTQTKKDANELALE-TDLRQEVQVLHGDIPQKQREMSLQA 292 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G+ LV ++ GLD+PEV LV + K+ S I GR R G Sbjct: 293 FRDGKVRCLVATDVAARGLDIPEVDLVVQCEPPKD-----VESYIHRSGRTGRAGRTGTC 347 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 I + + + ++ + + + A Sbjct: 348 ICFYKPNQEDAMRYVERRAGISFRRIGAPQPEDVIKASARDAFRSLEA 395 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 88/280 (31%), Gaps = 11/280 (3%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+ L ++V I I A + ++ E L + Sbjct: 109 YGGQSYSIQLSALRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDD 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQV 432 E QT SAT S + + + + E + Sbjct: 169 VESIMEKTPREKQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASI 228 Query: 433 DDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + +R A E +V T+ L E LE G L+ D++ R + Sbjct: 229 HKNKAIVRFLEAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVER 288 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 L+ G +V++ ++ GLD+ +SLV D + + + IGR R GKA Sbjct: 289 LKSGMLNVVIATDVAARGLDVDRLSLVINYDIP-----QDSEAYVHRIGRTGRAGRTGKA 343 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 IL+ + K I Q + + + + Sbjct: 344 ILFVKHNERYLLKNIIRHTNSDIAQVELPTAKIVEEKRIE 383 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 64/372 (17%), Positives = 122/372 (32%), Gaps = 21/372 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + +N+ + L+ + L++ NEL S E ++ G + Sbjct: 63 QKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITE-QAREIKR 121 Query: 332 DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 ++V I G+ L E L + T Sbjct: 122 GAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTW 181 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE 447 SAT + + + V G + + D +++ A N Sbjct: 182 LFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANP 241 Query: 448 RV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +V TKR + + E L E G LH D+ +R +++ R + +LV ++ Sbjct: 242 DIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDV 301 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ V+ V E + GR R G +I+ K + Sbjct: 302 AARGIDVDNVTHVVNYQLPDE-----IETYNHRSGRTGRAGKLGTSIVIVTKSELRKISS 356 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I +++ E P G+ + +L L I T+ + + +NV Sbjct: 357 IERIIKQKF-------EEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDN-YLPAINNVL 408 Query: 625 MDMSPKALQQKI 636 D+S + L +K+ Sbjct: 409 EDLSKEELIKKM 420 >UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=Eukaryota RepID=RH35_ARATH Length = 591 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 97/315 (30%), Gaps = 17/315 (5%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRG-PGEPPPTLFDYLPADGLLVVDESHVTIP 345 + + E++ + Y S G + + + +VV Sbjct: 232 RELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKD 291 Query: 346 Q-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 D R TL E + ++ + + QT+ SAT + Sbjct: 292 MLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFA 351 Query: 405 GGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 +V V G +E ++ LL +++ + VL+ K Sbjct: 352 RSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPP---VLIFCENKA 408 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 +D+ EYL G +H D +R I + G+ DVLV ++ +GLD P++ Sbjct: 409 DVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQH 468 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 V D E + + IGR R S + +E +Q+ Sbjct: 469 VINYDMPAE-----IENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQR 523 Query: 578 YNEEHGITPQGLNKK 592 + + Sbjct: 524 IPPVLAELNDPMEEA 538 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 91/310 (29%), Gaps = 17/310 (5%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L Q L +L + + ++ G + L Sbjct: 107 WDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQ 166 Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV I R D L E L QT Sbjct: 167 RGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQT 226 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + R D+L++ Sbjct: 227 MLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARAL 286 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q R ++ T TKR A + + L G LH D+ R + +R R G+ D+L Sbjct: 287 QAEGRG-RTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDIL 345 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ G+D+ +V+ V A E++ + +GR R G A+ D Sbjct: 346 VATDVAARGIDVDDVTHVFNFQAP-----EDEKTYVHRVGRTGRAGNKGVAVTLVDWEDM 400 Query: 560 SMAKAIGETE 569 I + Sbjct: 401 PRWSLIDKAL 410 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 115/337 (34%), Gaps = 17/337 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A L+NN +E +T + +++ +E+ G+ Sbjct: 74 AAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTKTKT--VCVYGGQSVKK 131 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 +++ + +++ + + + L E L + + ++ Sbjct: 132 QCEFIKKNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYL 191 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIR 440 Q + SAT + + + + + P+ + + I R + I Sbjct: 192 PSEAQILLFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIM 251 Query: 441 QRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E+ +V T TK+ A++L ++L + LH D+D +R I + + D Sbjct: 252 HLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDAD 311 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 VLV ++ GLD+ VS V + S I IGR R G AI + Sbjct: 312 VLVATDVASRGLDISGVSHVFNYHLPL-----NTESYIHRIGRTGRAGKKGMAITLVTPL 366 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 K + ++ + + + E I + K + Sbjct: 367 EY---KELLRMQKEIDSEIELFEIPTINENQIIKTLH 400 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 95/315 (30%), Gaps = 35/315 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D +L+ + I + M L Sbjct: 143 TPGRLLDLFERGKILLSSCEMLVIDEADRM-----------------LDMGFIPDIETIC 185 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------DPIIEVRPVATQV 432 + QT+ SAT + + + + +IEV P + + Sbjct: 186 TKLPTSRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKK 245 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L ++ + A + ++ K L LE+ G V +H D+ ER + Sbjct: 246 K--LCDMLR-AEKDHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERF 302 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 + G+ VLV ++ GLD+ +S V D I IGR R +G+A+ Sbjct: 303 KNGQISVLVASDIAARGLDVKGISHVFNFDVPTH-----PDDYIHRIGRTGRGGASGEAL 357 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + AI + + N + P + V A + R Sbjct: 358 TFVTPADEEAITAIEKLMGVEIPRLG-NRKKNAYPSKSEETVSPKQAKPVQEKSAASSPR 416 Query: 612 GKSRPIVEPDNVPMD 626 R P +P D Sbjct: 417 KAPRKTETPKKLPED 431 >UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Piroplasmida RepID=Q4MYL1_THEPA Length = 707 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 93/261 (35%), Gaps = 33/261 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L ++L + + S+ + + M + + Sbjct: 448 TPGRLLEFLSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVG---------------- 491 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVR-------PVATQV 432 QT+ SAT + + + + G L+ P + +V Sbjct: 492 -QIRPDRQTLMFSATWPSEIKRLASEFCKANSIYIQVGDLELTANPNIRQNVEFPNSYEV 550 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L + ++VL+ + K A+ LT L + LH + +R I+ Sbjct: 551 RDKLFDFLGSIPPEKKVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERILNMF 610 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R G+ +VLV ++ GLD+ ++ V LD +S I IGR R G+++ Sbjct: 611 RSGDVNVLVATDVAARGLDIKDIDYVINLDVP-----KSLLDYIHRIGRTGRGNSKGESL 665 Query: 552 LYG--DKITPSMAKAIGETER 570 LY D +TP+ K + + Sbjct: 666 LYFPIDTLTPAKVKFAQDLSK 686 >UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PLC1_9ACTO Length = 815 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 104/326 (31%), Gaps = 19/326 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G + L + +VV + G+ + L E L Sbjct: 107 YGGVAYEPQLEMLKSGVDVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPD 166 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-----PIIEVRPVAT 430 + QT+ SAT + + + + + + P Sbjct: 167 VERILRKTPELRQTMLFSATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRA 226 Query: 431 Q---VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++++ I Q A RV++ TKR A LT+ L + G + +H D++ R Sbjct: 227 HDLDKPEVVARILQ-AEDRGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARER 285 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + R + DVL+ ++ G+D+ V+ V E++ I IGR R Sbjct: 286 ALTRFRGDKIDVLICTDVAARGIDVEGVTHVINNTCP-----EDEKAYIHRIGRTGRAGA 340 Query: 547 NGKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 +G A+ + D + K I + E Q+ Y+ + Sbjct: 341 SGIAVTFVDWADVTRWKTINKALDLPYDEPQEIYSTSPELYHDLGIPTSAKGRIKAARED 400 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPK 630 K + R E + P S + Sbjct: 401 KPERDR-PPRRSEAEAGSSPASESSE 425 >UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2ED04_TRIVA Length = 521 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 34/268 (12%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D+L + + + + + M + + Sbjct: 207 FHPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLT----- 261 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIE 424 +T SAT + + + + + G + + Sbjct: 262 ------------KDRETFMFSATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVL 309 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + + +++ + ++++ TKR + L+++L+ R +H D E Sbjct: 310 LLQEHEKGEKCVEILKENQSK--KIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQE 367 Query: 485 RMEIIRDLRLGEF-DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+ + + VLV ++ GLD+ ++ LV D F + IGR A Sbjct: 368 RVVALDKFKNARTGGVLVATDVAARGLDVTDIDLVLNYD-----FPGDIEDYVHRIGRTA 422 Query: 544 RN-VNGKAILYGDKITPSMAKAIGETER 570 R G AI + +A + E + Sbjct: 423 RGEKTGVAITFFTDENRFLASDLVEVIK 450 >UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG7_ENCCU Length = 503 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 61/349 (17%), Positives = 119/349 (34%), Gaps = 48/349 (13%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 +L E+ R+ + + ++ + P L D L + + Sbjct: 174 RELCEQIRVEASKLVAGSRIRVVSIYGKKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLS 233 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + + + +GF QT SAT Sbjct: 234 EIRMFVLDEADKLLDMGFEIPIREI-HGFV----------------PKNTQTCLFSATYS 276 Query: 398 NYELEKSGGDVVDQ---VVRPTGLLDPI-IEVRPVATQVDDLLSEIR----------QRA 443 + + + + L I E+ V + LL+ ++ + Sbjct: 277 PKLTRMINYFLPEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNILKGPDINLKGSWRME 336 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++VLV K ++ + L++ G LH D + +R E ++ R G F V+V Sbjct: 337 VQPDKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVAT 396 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSM 561 ++ G+D+ +V LV D K+ + I IGR R +GK+I + D +T + Sbjct: 397 SVAARGIDIKDVKLVINYDIPKD-----IKEYIHRIGRTGREGKSGKSISFYDGGMTADL 451 Query: 562 AKAIGETERRREKQ----------QKYNEEHGITPQGLNKKVVDILALG 600 KA+ E R + + +N +K++ D +G Sbjct: 452 KKALVEVLRESKNAVPPFLTGASDEDFNARFERLKVTADKEMSDDEEVG 500 >UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23U16_TETTH Length = 475 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 90/290 (31%), Gaps = 31/290 (10%) Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + + P + D + L+ + + M Sbjct: 203 CTGGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLGRGFKD 262 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + + N P Q SAT LE + + D Sbjct: 263 QINKI---------FQNLPHDI--------QVALFSATMAPEILEITKQFMRDPATILVK 305 Query: 418 LLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 D D L E+ I + ++ TK+ ++L + L E Sbjct: 306 NDDLTLDGIKQFYIALDKEEWKFDTLVELYNNIEI-AQAIIYCNTKKRVDELRDKLIEKN 364 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H ++D R I+++ R G VL+ +LL G+D+ +V+LV D Sbjct: 365 MTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDLLSRGIDIHQVNLVINYDLPL----- 419 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + S I IGR+ R G AI + K + + + + + Sbjct: 420 KKESYIHRIGRSGRFGRKGVAINFVVPADAKFLKETEKYYQTQIVEMPLD 469 >UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=Eukaryota RepID=RH35A_ORYSJ Length = 627 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 90/267 (33%), Gaps = 14/267 (5%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 G D + +VV D R TL E + ++ Sbjct: 301 GVDMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 360 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQV 432 + + QT+ SAT + +V V+ G LD I EV V Sbjct: 361 EVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKED- 419 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++ + VLV K + + EYL G +H D ER I Sbjct: 420 ARIIYLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFF 479 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G+ DVLV ++ +GLD P++ V D E + + IGR R G A Sbjct: 480 KNGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IENYVHRIGRTGRCGKTGIAT 534 Query: 552 LYGDK-ITPSMAKAIGETERRREKQQK 577 + +K T + + + +++ Sbjct: 535 TFINKNQTETTLLDLKHLLKEAKQRIP 561 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 100/312 (32%), Gaps = 30/312 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + + + + M L ++ Sbjct: 129 TPGRVLDHLEKGTLSLENLKFFVLDEADEM-----------------LNMGFIDQVSSII 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 ++ ++ SAT + + S + V + P I + T+ + S Sbjct: 172 QYLPPKRMSMLFSATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFS 231 Query: 438 EIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +++ + ++ T+ +LT L+E +H + +R ++ + + G Sbjct: 232 LLQRTIVIENPDSCIIFCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNG 291 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 EF L+ ++ G+D+ +++ V D + I GR R +GK I + Sbjct: 292 EFRYLIATDIAARGIDVSDMTHVIHYDLP-----YEKERYIHRTGRTGRAGKSGKTIAFM 346 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITP--QGLNKKVVDILALGQNIAKTKAKGRG 612 + + + E K Q Y + + +K+ + A + Sbjct: 347 TRNAKPLIDELKEEAGIDFKTQPYPTKEDAEQHVERFEEKIETPIQKENKQAGVEKDIMK 406 Query: 613 KSRPIVEPDNVP 624 + + Sbjct: 407 LYFNGGKKKKLR 418 >UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BHL1_9BACT Length = 1064 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 60/440 (13%), Positives = 140/440 (31%), Gaps = 41/440 (9%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 T I + + P V + I+ A + Q Sbjct: 506 TQAIKADMESQQ--PMDRLVCGDVGFGKTEVAIRAAFKAADNSKQVVVLVPTTILAFQHF 563 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + + EL +L+ + + L + ++ +H + + Sbjct: 564 KTFSARLKELP------VRVDYLNRFRSTKDKNQILQDLSEGKIDILIGTHQLVNKNVVF 617 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + ++G + + + + + ++ATP L+ S D Sbjct: 618 KDLGLLIVDEEQKFGVAVKEKIRSLKENID--------VLTLTATPIPRTLQFSLMAARD 669 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + V + L+ + I +V +++ ++ Sbjct: 670 LSVIATPPPNRFPIESDVVRFSETLIRDGIMYELQRGGQVFFIHNRVENIAEISGLVQRL 729 Query: 470 GERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R H ++ + + + G+FD+L+ ++ GLD+P + + I +A+ G Sbjct: 730 VPDARIAIGHGQMEGTKLEKTLLSFMQGDFDILIATTIIENGLDVPNANTIFINNANNFG 789 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 L Q GR R+ + ITP + + ++R K E+ Sbjct: 790 LS----DLHQMRGRVGRSNK---KAFCYFITPPHSAMSSDAQKR----IKTIEQFSAIGS 838 Query: 588 GLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 G+ + D+ G ++ + G + + + K LQ+ I EL+ + Sbjct: 839 GIQIAMKDLEIRGAGDLLGGEQSGF--------INEMGFETYQKILQEAIDELKEN--EF 888 Query: 647 AQNLEFEEAAQIRDQLHQLR 666 + + E ++ + +++ Sbjct: 889 KELYQQEANDTLKSYVKEVQ 908 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 55/434 (12%), Positives = 119/434 (27%), Gaps = 59/434 (13%) Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 ++ N AA +++ + V YF + Y + + Sbjct: 1 MILDNAEQAAYYLNDLERLLKPSDVLYFPASYRQA-------------YAQETTDNANVL 47 Query: 122 MRLSATKAML-ERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAEL 179 +R K + ++ ++++ A++ ++ + I+ I L E+ Sbjct: 48 LRSEVLKKISGSKKPRIIISYPQAVFEKIISQNTLKRITFKIIKDTILSLNFINESLFEM 107 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 + R D G F VRG +ID+F R+E FD+ VERL FD T + ++ Sbjct: 108 GFQRVDFVTSPGEFAVRGGIIDVFSFAY-QHPYRIEFFDDTVERLCSFDVQTQRSITAFD 166 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEE----LAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + P T ++ +E + K +L E+ ++ Sbjct: 167 SIELLPDTSNNDFTDKRKSILEFFPANSSFIFSNFDKTTARLEQLFEKATDAYNSKEVTT 226 Query: 296 MMNELGYCSGIENY---------------------SRFLSGRGPGEPPPTLFDYL----- 329 + + S+ + P FD L Sbjct: 227 QYPPETLFMNRDEWIKDSHNKSVFVLERTEDLPITSQIHVKQSPQPAFNKQFDILISHLN 286 Query: 330 ---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + S+ + + + + ++ ++ F Sbjct: 287 ENNKRGYKNTLFCSNEQQTKRFHDIFQELEKTVHYKTEVLSIYEGFEDLEAQWACFSDHQ 346 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII----------EVRPVATQVDDLL 436 Y + K ++ + G I + V + + + Sbjct: 347 IFERYHKYQLKSDAARKQALNLKELTQMEVGDYVTHIDHGIGTFGGLQRIEVEGKWQEAI 406 Query: 437 SEIRQRAAINERVL 450 I I + Sbjct: 407 KLIYGERDILYLSI 420 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 84/265 (31%), Gaps = 32/265 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + + + M Sbjct: 148 TPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVR-----------------AIA 190 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 + QT+ SAT + + + + P A + Sbjct: 191 ARLPVRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAA 250 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL+ +R+ A R +V T TK+ A+ L L G LH D V R + D R Sbjct: 251 SLLAVLRREA--GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFR 308 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VLV +++ G+D+ +V+LV D + I IGR AR G A+ Sbjct: 309 RGRLLVLVATDVMARGIDVEDVALVVNFDIP-----EQPETYIHRIGRTARAGRRGTALS 363 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 D + I R Sbjct: 364 LCDPAERLKLRDIERQSGARITVID 388 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 48/332 (14%), Positives = 103/332 (31%), Gaps = 14/332 (4%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K + L+ + +++ EL G ++ G+ L Sbjct: 68 CEGGGKKPQALILSPTRELSIQIAEELNSLKGKRKLR--IAPFYGGQMIEIQLQRLRDGI 125 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + + K ++ E L K + + Sbjct: 126 DVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLMF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINER- 448 SAT L+ + + + E + +D + + + + Sbjct: 186 SATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDVEQDL 245 Query: 449 -VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 LV T+ ++L E L+ G RV LH DI ++R +I + +F +L+ ++ Sbjct: 246 YALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATDVAA 305 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+ +++ V + + + IGR R NG AI + I Sbjct: 306 RGIDVNDLTHVINYSMP-----QGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQ 360 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 ++++ + I + Sbjct: 361 REAHTEIRREELPQGRDIVEMKKQHFSEQLSE 392 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 99/340 (29%), Gaps = 27/340 (7%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +V+ I G M R L E + + K Sbjct: 1610 LKRGSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIR 1669 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 QT+ SAT + + V G +EVR + LL Sbjct: 1670 PDRQTLLFSATFPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMRLLQ 1729 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + +LV ++ + + + L + G LH D V+R I D + Sbjct: 1730 LLGLWYEKGN-ILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVR 1788 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 V+V ++ GLD+ ++ LV + +GR R G A + Sbjct: 1789 TVMVATSVAGRGLDVKDLVLVINYHCPNH-----MEDYVHRVGRTGRAGRKGTAYTFISP 1843 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL--GQNIAKT----KAKG 610 + + + ++ E +G KV A G Sbjct: 1844 DEEEYSVDLVKALENAKQTI--PPELTALAEGFTAKVKRGEARYHGSGFKGKGFTFDETE 1901 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHEL-EGLMMQHAQN 649 R +++ + ++ L + + + M + ++ Sbjct: 1902 RNETQRTADLQRRQYELDQGILVEDSGAVDDDDMEEPSKE 1941 >UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacteroidetes RepID=C0BPF2_9BACT Length = 465 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 91/262 (34%), Gaps = 23/262 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQR 442 + ++ATP L+ S D V T + IE V + I Sbjct: 50 KENVDVLTLTATPIPRTLQFSLMAARDLSVINTAPPNRYPIESNVVRFNETLIREAISYE 109 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 + +V ++ ++ R H ++ + +++ GEFDVL Sbjct: 110 IQRDGQVFFIHNRIENITEVAGLIQRLVPDARVGIGHGQMEGKKLENLMKAFMGGEFDVL 169 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+ + + I +A+ G L Q GR R+ + ITP Sbjct: 170 VSTTIIESGLDVSNANTIFINNANNFGLS----DLHQMRGRVGRSNK---KAFCYFITPP 222 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 + + R+R + + G G N + D+ G +I + G Sbjct: 223 Y-EVMTADARKRIQALEQFTALG---SGFNIAMKDLEIRGAGDILGGEQSGF-------- 270 Query: 620 PDNVPMDMSPKALQQKIHELEG 641 + + + K + + I EL+ Sbjct: 271 INEIGFETYQKIMAEAIDELKN 292 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 88/269 (32%), Gaps = 19/269 (7%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSA 371 ++ G D L +VV I + + K ++ E L Sbjct: 146 IATIYGGRAYEPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLG 205 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----------P 421 QT+ SAT + + + D Sbjct: 206 FLPDVETLIAGTPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQ 265 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +I +++ +++ I Q R ++ T TKR A + E L + G +H D+ Sbjct: 266 LIYRAHSMDKIE-VVARILQARGRG-RTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLG 323 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R + +R R + DVLV ++ G+D+ +V+ V + E+ + +GR Sbjct: 324 QGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQC-----VEDEKIYLHRVGR 378 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETE 569 R G A+ + D I + Sbjct: 379 TGRAGNKGTAVTFVDWDDMPRWGLINKAL 407 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 92/300 (30%), Gaps = 12/300 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA-RKETLVEYGFRLPSA 371 + G + L ++V I I + E L Sbjct: 103 ILPVYGGSSIESQIRMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMG 162 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPV 428 + E T+ SAT + + D G + + Sbjct: 163 FTDSINAILEKVPEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAY 222 Query: 429 ATQVDDLLSEIRQRAAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D + +++ A ++ ++ T++ +++ + L + G LH ++ +R Sbjct: 223 LVHAKDKYAALKRIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRD 282 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 +++ R +LV ++ GLD+ +++ V G S GR R Sbjct: 283 LVMQKFRQRHLQLLVATDVAARGLDVNDLTHVINY-----GLPDDIESYTHRSGRTGRAG 337 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G +I + + I ++ + I Q L K + DI + N + Sbjct: 338 KTGISIAIINLREKGKMREIERIINKKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEE 397 >UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SE71_NEMVE Length = 411 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 30/259 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + +++ + + M + + S Sbjct: 170 TPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEEQLRKIVGLATGTS---------- 219 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVA----TQVD 433 A QT+ SAT + V++ + G + P ++ V + Sbjct: 220 ----RARQTLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLYHYQKPQ 275 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL +R V+V T + + + +TE L++ LHS+ R ++++ R Sbjct: 276 KLLETLR--TTPYPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFR 333 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ D+LV ++ GLD PEV+ V D + I GR R +G A Sbjct: 334 DGKVDILVATDVASRGLDFPEVTHVINYDLP-----DTIECYIHRCGRTGRIGHHGIATS 388 Query: 553 YGDKITPSMAKAIGETERR 571 + +A+ + E R Sbjct: 389 FLTL-DCKIAEELKEMLER 406 >UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4RW46_OSTLU Length = 654 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 114/335 (34%), Gaps = 39/335 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L++ + + M L+ Sbjct: 219 TPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELI------------------ 260 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV----------DQVVRPTGLLDPIIEVRPVAT 430 + QT+ SAT + + + + DQ + +G + ++ + Sbjct: 261 LKSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSD 320 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEII 489 +VD + IR +A RV+V TKR +L + L++ + + LH D+ +R ++ Sbjct: 321 RVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVL 380 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R +F VLV ++ GLD+ V LV + K+ + I GR R G Sbjct: 381 AGFREDKFQVLVATDVAARGLDITGVELVIQCEPPKD-----AETYIHRSGRTGRA--GA 433 Query: 550 AILYGDKITPSMAKAIGETERR---REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + TP A+ ER+ + + + + I + + AK Sbjct: 434 TGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAKL 493 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + D+ + L I +L G Sbjct: 494 FMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAG 528 >UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8JCM3_CHLRE Length = 637 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 94/292 (32%), Gaps = 32/292 (10%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 M+ G + P L D L + + ++ + + M Sbjct: 305 MLCIGGIDPKPMYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDEADRMVDQ-- 362 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 ++ F QT+ SAT + +VD V Sbjct: 363 --------------VGFEDDVRDILSFFRGQRQTLMFSATMPAKIKAFAESALVDPVEVN 408 Query: 416 TGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 G +E ++ LL +++ A VLV KR + + EYL Sbjct: 409 VGRAGAANMDVIQEVEYVKEEAKLPYLLECLQKTAPP---VLVFAENKRDVDIIHEYLLV 465 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +H D +R I + G+ DVLV ++ +GLD P++ V D +E Sbjct: 466 QGVEAVAVHGDKAQEDRHAAIASFKKGDADVLVATDVASKGLDFPDIQHVINYDMPEE-- 523 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + + IGR R G A + + S + +E +Q+ Sbjct: 524 ---IENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDLKHLLKEAKQRVP 572 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 105/314 (33%), Gaps = 16/314 (5%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPL 377 G T L ++V + Q+ G R L E L + Sbjct: 114 GTSFRTQNQMLTRPIEVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVM 173 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVD 433 + A QT + +AT L+ + + + T + I + +D Sbjct: 174 EIASQLPKARQTAFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDID 233 Query: 434 DLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +R + ++ +V TKR + L + L G R LH D+ +R + Sbjct: 234 HKRRLVRHILSQPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTR 293 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 LR G+ +VLV ++ G+D+ +S V D + + +GR R G A Sbjct: 294 LRSGQTEVLVATDVAARGIDVAGISHVINFDLPRF-----AEDYVHRVGRTGRAGATGTA 348 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + K I ER ++ E G+ + ++ + G Sbjct: 349 VSLVGRQDAFPLKKI---ERFTGQKLIVTEIEGMIARFKPQERREGGGGRGGFGGKPRHG 405 Query: 611 RGKSRPIVEPDNVP 624 G+ R + + P Sbjct: 406 NGQGRSYGDRSSAP 419 >UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Brugia malayi RepID=A8NRL8_BRUMA Length = 830 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 105/335 (31%), Gaps = 32/335 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I P +Y+ + +A E L Q + + Sbjct: 475 AAFILPIINYIMNDGEKNDSRC---APIALILAPTRELVGQLYNQARKFANGTGVTVAKA 531 Query: 300 LGYCSGIENYSRFLS-GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G EN L D++ + + + S + + M D Sbjct: 532 YGQYKLFENIMELERGCNILFATMGRLKDFVINRKVKLHNISFFVLDEADRMLSQD---- 587 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVR 414 + + N + + QT+ SAT + E + + + Sbjct: 588 --------SFQTDIINLVHRPDFPSVKDRQTLLFSATITSEVKELAAKVLKENHAFVSNG 639 Query: 415 PTGLLDPIIEVRPVA----TQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLE 467 T +P++E + + D L+ + + N R LV K+MA+ + L Sbjct: 640 KTISANPLVEQNFIEVTSENKFDKLIQLLEEDREHNGDVARTLVFVQRKQMADVIALNLI 699 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + + + D +R E + D R G VLV ++ G+D+ ++ V D + Sbjct: 700 QKNIQSSSISGDRMQKQREEALSDFRKGNIKVLVATDVCARGIDVKDLQHVINYDMPSD- 758 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 + + IGR R GKA + + A Sbjct: 759 ----RVTYVHRIGRTGRLHRGKATSFINLADDDPA 789 >UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Plasmodium RepID=A5K071_PLAVI Length = 717 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 31/252 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ +V I + + L + + K Sbjct: 458 TPGRLLDLLESGVIHLLRCIYVVIDEADRL-----------------LDMGFEKQLKKIM 500 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLD-------PIIEVRPVATQV 432 Q ++ +AT + + D V G + V + + Sbjct: 501 TQVNRNKQLLFFTATWPEQVRKLAYQFSSFDPVKIQIGKSELTANKNIQQSVVISSSIDL 560 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L + ++ ++L+ TKR + L + L H +H D + ER I+ + Sbjct: 561 KKKLLDWLKQNYEGNKILIFCDTKRNCDSLCKELRYHQYNALAIHGDKEQRERDRILSNY 620 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R ++LV ++ GLD+ +S+V D + I IGR R G+A+ Sbjct: 621 RSDRCNILVATDVASRGLDIKNISVVVNYDLP-----NTIEDYIHRIGRTGRAGQKGRAV 675 Query: 552 LYGDKITPSMAK 563 L+ K Sbjct: 676 LFFPYDYYVPQK 687 >UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W1_9FIRM Length = 1092 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 122/359 (33%), Gaps = 30/359 (8%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + + A + ++ +H + Q G + +G Sbjct: 621 IGELSRFRTDVQQKKIIEDAKAGKVDILIGTHRMLSQDIGFQDLGLLIIDEEQRFGVVQK 680 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + + +SATP + + D + L+ + V Sbjct: 681 EKIRRLRQNVD--------VLTLSATPIPRTMHMAISGARDLSLITHPPLERMPVNTFVY 732 Query: 430 TQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERM 486 + D+++ E I + A +V V +D+ E +E G RV ++ ++ Sbjct: 733 IKSDEIMREAIEREVARKGQVYVVCRRISHMQDVKEKIERLVKGIRVDTVNGQMNEKYIE 792 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + GE DVLV ++ G+D+ + + ILDAD G L Q GR R Sbjct: 793 DTLSSFIAGEIDVLVCTKIIETGIDIKNANTIIILDADMMGIAE----LYQLRGRVGRGN 848 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + K + + ++ R K + G L + D+ G Sbjct: 849 R---SSFAYLLHNDYKK-LSDEQKSRLTAIKEFAKFG---SSLTLAMKDMQIRGAGDIIG 901 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL-EGLMMQHAQNLEFEEAAQIRDQLHQ 664 K + ++ +M K ++ + L EG ++ +E E + I + + Sbjct: 902 KQQ-------HGHMISIGYEMYIKLIEDAVKALNEGREIEIEDEVECEMSLDIEAYIPK 953 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/449 (15%), Positives = 145/449 (32%), Gaps = 47/449 (10%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 ++GV S I+ I + R ++A QL ++ F + + Sbjct: 5 ERIEVIGVEASASARYISENIKNHDR-VFLVAATAEDCMQLAAALEYFTKKETIVLSKD- 62 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD 152 S + E L A K + + +V+ + I Sbjct: 63 ---------------LFFGYESRDRQQEISFLRAVKRIASQERCMVIVTPFMINTKVSSA 107 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 ++ L LT+G I + + +L+EL Y R A++ G + VRG +ID+ + + + Sbjct: 108 VFKSA-LTLTMGQDISREDVEVQLSELGYERRQNAYEDGEYAVRGGIIDV--MQDGENGV 164 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH--------------------YVTP 252 R+E F + ++ + FD T + + I P + ++ Sbjct: 165 RIEFFGDCIDGIRKFDIKTQRSSEALESIDIEPVSFANGDEDSKIDIIDIVSPDVIFIEQ 224 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE--LGYCSGIENYS 310 + + ++ + +++ L E+ ++ EE L D++ M + + + + Sbjct: 225 PDVVAKSCTDEEQKFQKTILNLRESKQISEEDILDHMALVDMKRMEQRLGIWQECDKPKN 284 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + + + P F Y +V + V I + + E + GF + Sbjct: 285 KAIYYMSAFDIPKGSFYY-GKPAEVVRKNAGVIRNVIDS--KELKNFIERHEDEGFTVRV 341 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV--VRPTGLLDPIIEVRPV 428 + K E I E G D+ + + + R Sbjct: 342 MAKDEYSKARLQEHFGILGITADIFTFGRADEFRGFIDNDEHSCLLTEKDIFGVRVYRAK 401 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + + + I E + TK Sbjct: 402 RNTNESIGERLSGYQNIEEGDYLVHKTKG 430 >UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n=2 Tax=Giardia intestinalis RepID=A8B6X3_GIALA Length = 391 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 101/272 (37%), Gaps = 30/272 (11%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L L + + V + + M L Sbjct: 138 CHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEM-----------------LSRGFTE 180 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVD 433 + + +F Q + VSAT LE + + D V + ++ +R ++ Sbjct: 181 QIVSIMKFMNADIQIVLVSATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQ 240 Query: 434 D-----LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D ++ +I + ++ + V+ + ++L E L+ G + +HS++D ER +I Sbjct: 241 DAWKTEVVEDIYKVLSVQQGVI-FCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKI 299 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + + R G+ +L+ N++ G+D+ VSLV D R + + IGR+ R Sbjct: 300 MGEFRSGQTRILIATNIIARGIDVQNVSLVINYDIP-----REPETYLHRIGRSGRFGRK 354 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 G AI + +AI + + + Sbjct: 355 GVAINFVTDKDKQSMQAITDKFNVTTENLPED 386 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 66/386 (17%), Positives = 120/386 (31%), Gaps = 22/386 (5%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L R ++ E +L E L + +++ + G+P Sbjct: 66 LLQRLEIGGEPPRLPEALVLVPTRELAMQVAEA--MHRYGRRLGVQVLSVYGGQPFGQQL 123 Query: 327 DYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +VV T+ I G D R L E L + Sbjct: 124 RALRRGVHVVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPG 183 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT----------GLLDPIIEVRPVATQVDDL 435 A QT+ SAT +G + + V + + P A + L Sbjct: 184 ARQTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAAL 243 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + ++ T+ ++LTE L G + LH R ++ R G Sbjct: 244 TRVL--DMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAG 301 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 ++LV ++ GLD+ VS V D + + IGR R G+ Sbjct: 302 TAELLVATDVAARGLDIEHVSHVINYDVPC-----APEVYVHRIGRTGRA--GREGAAIT 354 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + P I ER ++ + + + + +L + + + A+ Sbjct: 355 LVEPREHYLIRNVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVV 414 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEG 641 + + MD++ A++ EG Sbjct: 415 EGLADEFDVMDIAAAAVKLAHDATEG 440 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 101/323 (31%), Gaps = 33/323 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DYL + + + + + M L K Sbjct: 127 TPGRLLDYLAHGKISLRHIEFLVLDEADRM-----------------LDMGFIADVRKIV 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVD 433 + T SAT E + + + +D + +++ Sbjct: 170 QQIPNDRITALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKK 229 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L++ + + + +V T TK A+ L +YL+E +H D +R+ ++ R Sbjct: 230 VLVNLLNTESIK--KTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFR 287 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 + +L+ ++ G+D+ ++S V D + + IGR R G +I Sbjct: 288 TNQIRILIATDVAARGIDIKDISHVINFDLP-----EDIENYVHRIGRTGRAKQEGVSIS 342 Query: 553 YGDKITPSMAKAIGETERRREK-QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 K ++ I + + +Q + + + + K + + Sbjct: 343 LVCKEELNLLANIESYIQFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKERFSNQKKRSK 402 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ 634 KS + K ++ Sbjct: 403 KKSFHEGLIPQKGISPKSKQKRK 425 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 108/350 (30%), Gaps = 41/350 (11%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEI----KEELAARRKVLLENNKLLEEQRLTQ 288 + S + P ++ + + ELA + + + Sbjct: 45 RTGSGKTAAFVVPMLQHLLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGM 104 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T + E P L D+L L+ D + + + Sbjct: 105 ITGGQEFKFQAALFRKNPEIII---------ATPGRLIDHLKQKKDLMEDVEYFILDEAD 155 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M D + PQT+ SAT L+ + Sbjct: 156 RMLDMGFEE---------------DVLTIANACSGKAKPQTLLFSATLQQRGLKHVIKQI 200 Query: 409 ---VDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAED 461 +++V + + IE + D I NE + ++ T TK E Sbjct: 201 QNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLLSNEEYRQAIIFTNTKEKTEQ 260 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +L H V YLH D+ ER ++ +R G F VLV ++ GLD+ + LV Sbjct: 261 TYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVATDVAARGLDIQSIDLVINF 320 Query: 522 DADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETER 570 D RS + IGR R +G AI D ++ AI R Sbjct: 321 DM-----ARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAIERYLR 365 >UniRef50_C1XT24 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Meiothermus RepID=C1XT24_9DEIN Length = 988 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 95/276 (34%), Gaps = 25/276 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 T+Y+SATP L + + D T +A L+ E I Sbjct: 604 DTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIQTVLAPYDPSLVREAILSEMERG 663 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + YLE R +H + + E++ G FDVL+ Sbjct: 664 GKVFYVHDRVATIQARQRYLENIAPEARIGVVHGQMPEGDIEEVMLAFAEGAFDVLLATT 723 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+PE + + I AD+ G +L Q GR R Y P Sbjct: 724 IIESGLDIPEANTIVIERADRLGLA----ALYQLRGRVGRRDQE---AYAYFFHPPR--- 773 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNV 623 + E RR + G G D+ G N+ + G V Sbjct: 774 LTEAAERRLSAIADLSDLG---SGHLLAEKDMEIRGVGNLLGPEQHG--------HIRAV 822 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 +++ + L + I +L+G + +++ + A R Sbjct: 823 SLEIYTELLAEAIAKLKGEKTEPEKHVTLDLAVSAR 858 Score = 59.8 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 8/75 (10%) Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P L L VG + +L RL + Y R + + G F VRGE+++I Sbjct: 81 PQDPSAWRLVLEVGRRYLREDLLERLTRMGYLRESEEGEAG-FAVRGEIVEI-------G 132 Query: 211 ALRVELFDEEVERLS 225 +R+E F +E+E + Sbjct: 133 EVRLEFFGDELEAIK 147 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 13/239 (5%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 L Y Y P T L + Sbjct: 365 LQYAGEARLYLPVEQLPLLKRHPGT----TDDPPRLSSLGKGEWKKAREKAQKDAEELAA 420 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 ++ + + E+++L + + TP + D + + Sbjct: 421 RMLVLHAKRQATPGRAWAPIPEWDSLIEKNFPYALTPDQE--KSLEDTFRD--LEAPRPM 476 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRY 475 D +I + + L + +V + T ++ + E RV Sbjct: 477 DRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQHTQTFKSRFEGLPVRVEG 536 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG-LDMPEVSLVAILDADKEGFLRSER 533 L ++ I+RDL G D+++G + L G L ++ L+ I + + G + ER Sbjct: 537 LSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLGLLIIDEEHRFGVAQKER 595 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 90/308 (29%), Gaps = 36/308 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + + M L + Sbjct: 131 TPGRLIDHLERGKIDFSRLEVLVLDEADRM-----------------LDMGFVDDIKAIA 173 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVR----PVATQVD 433 QT+ SAT + D + IE R + Sbjct: 174 ARCPAERQTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKN 233 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + + + + +V TKR E++++ L E G LH D+ +R ++ LR Sbjct: 234 RLLDALLRDVEM-VQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLR 292 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G VLV ++ G+D+ +S V D R + IGR R G A+ Sbjct: 293 EGRTRVLVATDVAARGIDVASISHVINFDLP-----RQAEDYVHRIGRTGRAGRTGIAVS 347 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA--LGQNIAKTKAKG 610 + + K I R + + G+ P G K Sbjct: 348 FAGMREGGLVKNIERYTGNR---IEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKR 404 Query: 611 RGKSRPIV 618 R Sbjct: 405 SFGDRSEP 412 >UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQV9_9SPHI Length = 535 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 111/325 (34%), Gaps = 13/325 (4%) Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKE 359 G+ ++ S + G G G+ L +++ I + G + D+ Sbjct: 92 GFGYFVQANSIAIYGGGKGDDWDKQRKALETGADIIIATPGRLIAHMQLGYVKFDKIDYL 151 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ------VV 413 L E L + + E QT+ SAT N E S + D V Sbjct: 152 VLDEADKMLDMGFSDDIMNIVEKIPAKRQTLLFSATMPNKIREFSKKLLTDPEEIRLAVS 211 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 +P +D + ++ L I+ + +++ T K + L + Sbjct: 212 KPAAGIDQQFYMAFDNQKLPLLAHLIKNSTKPVQSMVLFTSRKSEVNSIVRALSKLNYEA 271 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 R + SD++ +R ++RD + F +LV ++L G+D+ ++ V D R Sbjct: 272 RGISSDLEQDDREVVLRDFKNKAFPILVATDVLSRGIDIDNLTHVVNYDIP-----RDAE 326 Query: 534 SLIQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + I A G AI + + +I + R +Q EE G+ + Sbjct: 327 DYVHRIGRTARAATTGTAITFVSDQDQNRIVSIEKLIEREVDKQAITEELGMGKSPVFDP 386 Query: 593 VVDILALGQNIAKTKAKGRGKSRPI 617 G + A+G + Sbjct: 387 KRFSGRRGDSSRGGSARGANAAGKG 411 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 87/265 (32%), Gaps = 15/265 (5%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + R D+ L E L K F Sbjct: 120 LRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKR 179 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA 444 Q + SAT + + G V + V P +E + + Sbjct: 180 QNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIK 239 Query: 445 INE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N+ +VLV + TK A L +LEE +H + R + + + + G+ VLV Sbjct: 240 DNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVA 299 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+D+P++ V D + IGR R GKAI + Sbjct: 300 TDIAARGIDIPQLPQVVNFDLP-----NVSEDYVHRIGRTGRAGEVGKAIS---LVCADE 351 Query: 562 AKAIGETERRREKQQKYNEEHGITP 586 + ER ++ + E G P Sbjct: 352 VGELFGIERLIQQVLERRELEGFAP 376 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 97/317 (30%), Gaps = 29/317 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D +L+ D + I + M L + Sbjct: 129 TPGRLIDLFERGSILLRDVKVLVIDEADRM-----------------LDMGFIPDVERIV 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQV---VRPTGLLDPIIEVRPVATQVDDLLS 437 QT++ SAT + +++ + PT + +E + + + Sbjct: 172 ALLPKIRQTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKRE 231 Query: 438 EIRQRAAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +RQ + KR + L + L HG + LH D+ R E + + Sbjct: 232 ALRQLLRRETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRA 291 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 E ++V ++ G+D+ EVS V D I IGR R G+A Sbjct: 292 EVQLMVCSDVAARGIDVTEVSHVFNFDVPTH-----PEDYIHRIGRTGRAGRLGRAYTLA 346 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKTKAKGRGK 613 +AI + E + + + V + + +G + Sbjct: 347 TPEDAKYLRAIENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARR 406 Query: 614 SRPIVEPDNVPMDMSPK 630 S P ++P+ Sbjct: 407 SGRGSADAERPRPLAPE 423 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/331 (14%), Positives = 99/331 (29%), Gaps = 17/331 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + I + L + + + T+ + + + R Sbjct: 151 KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV 210 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALD 373 G + P + + L +++ + + + L E L Sbjct: 211 VFGGVDMNPQMAE-LRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFL 269 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVR 426 + QT+ SAT + + + + + I+ Sbjct: 270 PDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDV 329 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + ++ IR R+ +V+V +K A L +E G +H D ERM Sbjct: 330 AEGDKQAAVVKLIRDRSLK--QVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERM 387 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + + + GE + LV ++ GLD+ E+ V D + + IGR R Sbjct: 388 QALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLP-----FNAEDYVHRIGRTGRAG 442 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 +G A+ I + +R + Sbjct: 443 ASGDALSLCSPNERKQLADIEKLIKRTLSLE 473 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 101/325 (31%), Gaps = 18/325 (5%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + T+ + E R L G P + L + Sbjct: 70 AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK-LRGGVDV 128 Query: 336 VVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V + + + D+ L E L + + Q + SA Sbjct: 129 LVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSA 188 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVD--DLLSEIRQRAAINER 448 T + + + + + D + + + +LLS + + ++ Sbjct: 189 TFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNW-QQ 247 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VLV T TK A L E L + G R +H + R + D + G+ VLV ++ Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+ E+ V + + IGR R G+A+ + + I + Sbjct: 308 GLDIEELPHVVNYELP-----NVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362 Query: 568 TERRREKQQKYNEEHGITPQGLNKK 592 ++ + G P K Sbjct: 363 LLKKEIPRIAIP---GYEPDPSIKA 384 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 99/312 (31%), Gaps = 31/312 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + L + + S + + + M R A + Sbjct: 131 TPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAA---------------S 175 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVD 433 E+ T SAT ++ + + D V +E V P ++ Sbjct: 176 MPESGKRITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLG 235 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + R +V T+ A+++ + G + D+ ER I+ LR Sbjct: 236 ALGRVLATRDED--AAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLR 293 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G DVLV ++ GLD+ + LV D R + + +GR R G+++ Sbjct: 294 DGSLDVLVATDVAARGLDVERIGLVINFDVP-----RETEAYVHRVGRTGRAGRAGRSLT 348 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGR 611 + + I + + ++ ++ + V + + + Sbjct: 349 FFTPKEQFRLRQIEKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLL 408 Query: 612 GKSRPIVEPDNV 623 + R E + Sbjct: 409 HEIRHTTEIEVE 420 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 98/303 (32%), Gaps = 13/303 (4%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPS 370 + G+ L +V + I + D + L E L Sbjct: 111 HVLPIYGGQSYDIQLRPLKRGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKM 170 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII----EVR 426 + + Q SAT N + + + + + Sbjct: 171 GFIDDIKWIMQRIPEQRQIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKY 230 Query: 427 PVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + L + + + + +++ TK + +LTE L G ++ DI + Sbjct: 231 CMVGGLSNKLEALTRILEVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQ 290 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R II D + G+ D+L+ ++ GLD+ +S V D + S + IGR R Sbjct: 291 RERIINDYKQGKIDILIATDIAARGLDVERISHVVNYDIP-----QDAESYVHRIGRTGR 345 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G+AIL+ M I R++ + I + + +I+ N Sbjct: 346 AGRKGEAILFVSNRERRMLNTIEHVTRQKITPIELPSVKIINAKRIETFKQNIIQTINNQ 405 Query: 604 AKT 606 Sbjct: 406 NLE 408 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 64/396 (16%), Positives = 121/396 (30%), Gaps = 37/396 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + E + + Sbjct: 539 PMDRLVCGDVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLE--RFAV 596 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E+ SRF + + L + + ++ +H + G R + L Sbjct: 597 RVESLSRFTTAAER----RRILRDLASGEVDILIGTHALL--------GAEVRPKDLGLL 644 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + + + ++ATP ++ + D V T Sbjct: 645 VVDEEQRFGVRHKERIKQLKTSVDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSV 704 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + V ++L+ I + A +V E+ + L E G R H + Sbjct: 705 LTHVGPYDEELVRRAIEREVARGGQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMP 764 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E+++ GE DVLV ++ GLD+ + + + AD G + L Q GR Sbjct: 765 ERALEEVMQRFLEGEADVLVTTTIVESGLDIATANTLIVERADAMGLAQ----LYQLRGR 820 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y P A E +RR E + E G + D+ G Sbjct: 821 IGRSTEQ---AYAYLFAP--LGATLEAQRRLEALLDFTE----LGSGFAVAMRDLEIRGA 871 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 + V +M + L++ + Sbjct: 872 GNLLGAEQSG-------HIAAVGFEMYLRLLEEAVA 900 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 21/199 (10%) Query: 50 ANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFI 109 A + A +RP ++L+ + AA+ + F E P ++PS Sbjct: 19 AYLAARNERPVLLLSSTEEDAARYARDAACFTDE--------------PVVHLPSRGVPY 64 Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ 169 R A A+ R VV A A+ L L L G+ +D Sbjct: 65 GDVFDPEVWRVGARQRALHALDSAR--VVAAGPLALMERTP----LHEPLRLAGGVELDM 118 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +L RLA L Y R ++ F+ G F VRG ++D+FP+ + +RVE + +EVE + Sbjct: 119 DEVLLRLAALGYERVERVFRPGEFAVRGGILDLFPS-TRRSPVRVEWWGDEVESVRAVSL 177 Query: 230 LTGQIVSTIPRFTIYPKTH 248 T + V + T+Y Sbjct: 178 ATRRAVKELAAVTVYAARE 196 >UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V7B8_MONBE Length = 592 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 108/364 (29%), Gaps = 39/364 (10%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P +E I + A E + + + E +LG Sbjct: 206 LPALMLALDQE-IKMPFVGGEGPFAIIMAPSRELARQTYDVLIEFTDALAKEGYPQLGIM 264 Query: 304 SGIENYSRFLSGRGPGE-------PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 I S P L D L + + + + + M Sbjct: 265 LCIGGLSMQEVMERCQNGVHIAVCTPGRLIDVLGKKRITLDVCRYFCLDEADRMVDMGFE 324 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + QT+ SAT + + +V V Sbjct: 325 DDIR-----------------TIFSYFKGQRQTLLFSATMPTKVKDFAASALVKPVTVNV 367 Query: 417 G------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G LD I EV V ++ + V++ + K+ +D+ EYL G Sbjct: 368 GGRAGAASLDVIQEVEYVNPD-SRVVYLLECLQKTPPPVMIFSEKKQDVDDIHEYLLLKG 426 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D ER ++ + G DVLV ++ +GLD P++ V D +E Sbjct: 427 VHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASKGLDFPDIKHVINFDMPEE---- 482 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + IGR R+ G A + + P M + +E +Q+ Sbjct: 483 -LENYVHRIGRTGRSGKTGLATTFVSDMVP-MTTLLDLKYLLKEARQRIPPFLRKLKSEH 540 Query: 590 NKKV 593 + + Sbjct: 541 ERFL 544 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 115/365 (31%), Gaps = 15/365 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 N++ ++ L + ++ ++ S + G + D + ++ Sbjct: 79 NSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRD-IRRGAQII 137 Query: 337 VDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + + D + L E L SAT Sbjct: 138 VATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFSAT 197 Query: 396 PGNYELEKSGGDVVDQV---VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV--L 450 +V + P +++ IE + + + D + +R+ +E + + Sbjct: 198 MAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDYDEDMFGV 257 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR +++ + L +G LH D+ +R ++ R +L+ ++ G+ Sbjct: 258 VFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIATDVAARGI 317 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ +++ V GR AR G +I + K I Sbjct: 318 DVDDITHVI-----HFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIASKL 372 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 Q + IT + +++ +++ N + + D ++ Sbjct: 373 GIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDEQ--LVNAVQESFADVTKEEIIA 430 Query: 630 KALQQ 634 K L + Sbjct: 431 KLLTK 435 >UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID=Q8I0W7_PLAF7 Length = 1123 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 86/263 (32%), Gaps = 21/263 (7%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG---FRLPSALDNRPL 377 P L D L ++ ++V + + M + L S D L Sbjct: 831 TPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALAL 890 Query: 378 KFEEFEALAPQ----TIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRP--- 427 + E + T SAT S + G IE + Sbjct: 891 QEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFL 950 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L EI + ++V K++A+ +++ + + + LH R + Sbjct: 951 TEGKKKQKLQEILEMYEPP--IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQ 1008 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 + + EFD+LV ++ G+D+ V LV D K+ S IGR R Sbjct: 1009 TLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKD-----IESYTHRIGRTGRAGM 1063 Query: 547 NGKAILYGDKITPSMAKAIGETE 569 G AI + + + + + Sbjct: 1064 KGLAISFITEHDSHLFYDLKQFL 1086 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 90/268 (33%), Gaps = 32/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L GL++ D + + + M R A K Sbjct: 178 TPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVE-----------------KIF 220 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVD 433 + Q SAT + + D V + + P +V Sbjct: 221 SYAPTQRQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVG 280 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + + +V T T+ AE++ L E G + D+ ER +I+ LR Sbjct: 281 ALTRIL--ATSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLR 338 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G DVLV ++ GLD+ + LV D R + + IGR R G+A+ Sbjct: 339 SGALDVLVATDVAARGLDVDRIGLVVNFDIP-----REAEAYVHRIGRTGRAGRTGRAVS 393 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNE 580 + K I T + ++ Sbjct: 394 FVTPHERGKLKFIENTIKVSLEEIDIPS 421 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 94/297 (31%), Gaps = 25/297 (8%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + I + + + E L + Sbjct: 118 LKQKTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKK 177 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIR 440 T+ SAT + V +D + +++ L + Sbjct: 178 VTMLFSATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILI 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 E V++ TK + + ++L+ G V +H + ER+ I+ RLG+F +L Sbjct: 238 --TEKPETVVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRIL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V +L G+D+ ++ V D E + + + IGR R GKAI + Sbjct: 296 VSTDLASRGIDVKGITHVINYDLPVE-----KEAYVHRIGRTGRAGEKGKAISFCVNEKD 350 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + I E + E V + G K+K K + + Sbjct: 351 KLLSEIEEFIGFKIPVYNLPE---------KIMVEKEKSEGIKTLKSKPKRKEEKSK 398 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 94/324 (29%), Gaps = 35/324 (10%) Query: 300 LGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 G ++Y R G P + D++ L + V + + M Sbjct: 104 GVPIYGGQSYERQYRALAAGSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRM---- 159 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-- 412 L K + Q ++ SAT E D Sbjct: 160 -------------LDMGFREDIEKILSAVPVPRQLLFFSATMPRPIQELIKRTARDPAWI 206 Query: 413 -VRPTGLLDPIIEVRPVATQVDDLLSEIRQR---AAINERVLVTTLTKRMAEDLTEYLEE 468 + P +E L + + +V TK M +DL E+L Sbjct: 207 KIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFRYG-IVFCSTKVMVDDLDEHLHA 265 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G V LH D+ +R ++ R F+ L+ ++ GLD+ ++ +V D + Sbjct: 266 RGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAARGLDVDDLEVVFNYDLPND-- 323 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 IGR R +G+A + +A+ + ++ + + Sbjct: 324 ---AEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKLDLRRGRLPSLDEVEEA 380 Query: 588 GLNKKVVDILALGQNIAKTKAKGR 611 N I A + Sbjct: 381 RTNVFFEKIRAALEAKEFKPHDRM 404 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 104/329 (31%), Gaps = 19/329 (5%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 EN K ++ LT + +++ +E+ G + G L + + Sbjct: 67 ENAKRVQALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHM--QLKALKSGVDV 124 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + D L E + + + +T+ SA Sbjct: 125 VVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSA 184 Query: 395 TPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T + + + + D + L + + + + L + Sbjct: 185 TMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEPDFYG 244 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 LV T T+ A+ + L E G +H D+ R EI+ + +LV ++ Sbjct: 245 --LVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAA 302 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+P+++ V + ++ + GR R G AI I Sbjct: 303 RGIDVPDLTHVVN-----FALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFIT 357 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVD 595 ++ + K H + ++VD Sbjct: 358 KSSGIDITKAKLPCIHDVIYSK-KSRMVD 385 >UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella grylli RepID=A8PM28_9COXI Length = 421 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 56/343 (16%), Positives = 105/343 (30%), Gaps = 16/343 (4%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + + G + + R + G + L ++V + Sbjct: 75 ILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLLTGGVDIIVACPGRLLD 134 Query: 346 QIGGMYRGDRARKETLV--EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + G + + LV E + + Q + SAT Sbjct: 135 LLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRRQNLLFSATMSADIRLL 194 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPV-----ATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + V G P + + T +LL I Q +I ++ T TK Sbjct: 195 IDKVLHRPVRIQIGEPKPAVTITQTLFPVSETLKVNLLETILQNHSI-HSAIIFTRTKHR 253 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ L E+L + G + ++ R + R GE LV ++ G+D+ +S V Sbjct: 254 AQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKFLVATDVAARGIDIDHLSHV 313 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D + IGR R G A K ++I +++R ++ Sbjct: 314 INFDMP-----NTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQSIEHLQKKRLEECI 368 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 E +N + + A + + I P Sbjct: 369 IAEFD--YHAKINPSMEPLNAYRRKPLSYPHSPSTSRKKIASP 409 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 69/391 (17%), Positives = 123/391 (31%), Gaps = 31/391 (7%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 E + + L L + E +RL + TQ + G G + S + Sbjct: 70 EFVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAPHIVVG 129 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + ++L L++ D + + + M V Sbjct: 130 TPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIA---------------- 173 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVDDLLSE 438 + QT+ SAT + S V G P IE T + L Sbjct: 174 -YTPPQRQTLLFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPL 232 Query: 439 IRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + + +V TK+ + + E LE G V LH D++ +R +++ Sbjct: 233 LISVLSHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRS 292 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 VLV ++ GLD+ ++ LV + + IGR R +G A+ Sbjct: 293 CRVLVATDVAARGLDIKDLELVVNFE-----LAFDPEVHVHRIGRTGRAGMSGLAVSLCT 347 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA---LGQNIAKTKAKGRG 612 + A AI + + + K + L ++V + I + G Sbjct: 348 PQEMTRAHAIEDYLQMKLKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIRPSDILGAL 407 Query: 613 KSRPIVEPDNVPM-DMSPKALQQKIHELEGL 642 + +V DM P I + Sbjct: 408 TGEAGLTAADVGKIDMFPVHAYVAIRKASAK 438 >UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Frankia RepID=A8L2H9_FRASN Length = 671 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 21/314 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G L A +VV + R L E L Sbjct: 211 YGGRAYEPQLSALRAGVDIVVGTPGRLLDLARQKALDLAGVRALVLDEADEMLDLGFLPD 270 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVAT 430 + F T+ SAT + + + V G P + Sbjct: 271 VERILAFLPEQRHTMLFSATMPGPVISLARRFMTRPVHVRAEQPDEGRTVPNTQQHVFRA 330 Query: 431 QVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D + + + +A +V T+R A+ + E L G +H D+ +R + Sbjct: 331 HALDKMEVLARVLQAESRGLAMVFVRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQA 390 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 +R R G+ DVLV ++ G+D+ V+ V E + + IGR R + Sbjct: 391 LRAFRAGKVDVLVATDVAARGIDVGGVTHVVNYQCP-----EDEHAYLHRIGRTGRAGGS 445 Query: 548 GKAILYGDKITPSMAKAIGETE-------RRREKQQKYNEEHGITPQGLNKKVVDILALG 600 G A+ + D + ++ E P G+ + Sbjct: 446 GVAVTFVDWDDLPRWTLVNRALALPFEEPLETYSTSEHLFELLAIPAGVKGTLPHSARTR 505 Query: 601 QNIAKTKAKGRGKS 614 +A + + G+ Sbjct: 506 AGLAAEEIEDLGEK 519 >UniRef50_A0C369 Chromosome undetermined scaffold_146, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0C369_PARTE Length = 566 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 12/270 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPL 377 G + + +V+ + D R L E L + Sbjct: 236 GMDMSSQLQSIRNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIR 295 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDD 434 E QT+ SAT E + +VD +V G I + + + ++ Sbjct: 296 NILEHFTGPRQTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEE 355 Query: 435 LLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + V++ + + +D+ EYL G V LH +R + ++ Sbjct: 356 KLHYLLDCLKKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFL 415 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ DVLV ++ +GLD P++ V D K+ S I IGR R G+A Sbjct: 416 NGQKDVLVATDVAAKGLDFPDIKHVINYDMPKD-----IESYIHRIGRTGRQGKTGRATT 470 Query: 553 YGD-KITPSMAKAIGETERRREKQQKYNEE 581 + + + S+ + +++ E Sbjct: 471 FVNRQQEESILLDLKYLLVESKQKIPQFLE 500 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 112/393 (28%), Gaps = 40/393 (10%) Query: 228 DPLTGQIVST-IPRFTIYPKTHYVTPR-ERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 D + + P V + + + + ELA + E + Sbjct: 37 DVVGQSSTGSGKTAAFALPAIERVDTKLKAVQVLILCPTRELAVQVA--------EEVNK 88 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 L + +E+ G + + + P + D++ L + S V + Sbjct: 89 LASFKRGVMEVPIYGGQSYERQFRALAAGAQVVIGTPGRVMDHMERGTLKLDKLSMVILD 148 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M L + + Q+++ SAT + Sbjct: 149 ECDRM-----------------LDMGFRDDIEHILKSVPEQRQSLFFSATMPREIRDMIS 191 Query: 406 GDVVDQVVRPTGLL---DPIIEVRPVATQVD---DLLSEIRQRAAINERVLVTTLTKRMA 459 + + P ++ ++L+ + ++ TK M Sbjct: 192 RFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRYG-IIFCSTKIMV 250 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++L E L G LH DI +R + + F+ L+ ++ GLD+ ++ +V Sbjct: 251 DELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAARGLDVDDLEVVF 310 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + IGR R GKA + +++ R ++++ Sbjct: 311 NFDLPND-----AEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLDIRRERV 365 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + N + A Sbjct: 366 PSLDQVEEARENVFFEKLRATLDAKKFCPQDRF 398 >UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccharomyceta RepID=RRP3_YEAST Length = 501 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 127/403 (31%), Gaps = 16/403 (3%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 I I P + Q A L +++ + T+ + Sbjct: 106 PIQSKAIPPALE-GHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQ 164 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGD 354 + E G R G D + +++ + + + Sbjct: 165 IKETFDSLGSLMGVRSTCIVGGMNMMDQARDLM-RKPHIIIATPGRLMDHLENTKGFSLR 223 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY-VSATPGNYELEKSGGDVVDQVV 413 + + + E L + + +T Y SAT + + + + V Sbjct: 224 KLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYLFSATMTSKIDKLQRASLTNPVK 283 Query: 414 RPTGLLDPIIEV-----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 ++ V + + I + +++ T TK AE L+ Sbjct: 284 CAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNL 343 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 LH D++ +RM + + G+ +LV ++ GLD+P V +V D + Sbjct: 344 LEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVD-- 401 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 +S I +GR AR GK+I + + I E ++ ++ ++ +T + Sbjct: 402 ---SKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVLGKKLPKESVDKNIILTLR 458 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 K + + N + RGK R MDM + Sbjct: 459 DSVDKANGEVVMEMNRRNKEKIARGKGRRGRMMTRENMDMGER 501 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 107/322 (33%), Gaps = 19/322 (5%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L A +++ I G D L E L N K + Sbjct: 117 LKAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVDD--LLSEIRQ 441 QT+ SAT + + + + T +D I + +++ LL+ + + Sbjct: 177 QTLLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIK 236 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + RVLV T TK A+ + + L + + + +H R + D + G+ VLV Sbjct: 237 EHKM-SRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ E+S V D I IGR R G AI + Sbjct: 296 ATDIAARGIDISELSYVVNYDIP-----NQAEIYIHRIGRTGRAGLGGNAINLCNIDDMD 350 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I + E P + +K + + TK G+ + + Sbjct: 351 YLREI-----EKHIGMVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVKTEEKI 405 Query: 621 DNVPMDMSPKALQQKIHELEGL 642 KA ++ +++ Sbjct: 406 LLNEGAKKTKAHKKPVYKTGEE 427 >UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIT6_9CRYT Length = 538 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 87/262 (33%), Gaps = 18/262 (6%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-----EYGFRLPSALDNR 375 P + D L ++ +++ + + M + R + + Sbjct: 268 TPGRMRDCLEKSLTVLTQCNYIILDEADRMVDMGFEDCLNYILDQIPANYERGSEEGNTK 327 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPV 428 LK T SAT + + + + + G + I+ Sbjct: 328 ILKNRYGCRNHRITQMFSATMQSEVEKIARKYLKFPLYVTIGDMGSGKKSIQQILNFISE 387 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L++ + +++ K+ + + + +G +V LH +R Sbjct: 388 NKKQSTLINVLNNYEYAIPPIIIFVNQKKTVDIVCRSIASNGFKVIGLHGGKIQEQRENN 447 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + R G +D+LV ++ G+D+ V+LV D + + IGR R + Sbjct: 448 LNLFRNGIYDILVATDVAGRGIDIANVNLVINYDVPS-----TIDTYTHRIGRTGRAGKS 502 Query: 548 GKAILYGDKITPSMAKAIGETE 569 G AI + + ++ + + Sbjct: 503 GVAISFVTQQDSNLFSELKKIL 524 >UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QE56_CATAD Length = 795 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 94/316 (29%), Gaps = 26/316 (8%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G L A LVV + G R L E L Sbjct: 167 YGGRAYEPQIAALSAGVDLVVGTPGRLLDLAKQGHLDLSGVRMLVLDEADEMLDLGFLPD 226 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----------PTGLLDPIIEV 425 + QT+ SAT + + + I Sbjct: 227 VERIVTQVPKDRQTLLFSATMPGQVIALARQYMSRPTHIRAADPHDTGTTVANTTQWIYR 286 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + + L ++ +V TKR A + E LE G +H D+ R Sbjct: 287 AHALDKTEMLARMLQAEG--RGLTMVFCRTKRTAAKVAEELESRGYAAAAVHGDLGQGAR 344 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 + +R R G+ DVLV ++ G+D+ V+ V +++ + IGR R Sbjct: 345 EQALRAFRNGKVDVLVATDVAARGIDVEGVTHVVNFQCP-----EDDKTYLHRIGRTGRA 399 Query: 545 NVNGKAILYGDKITPSMAKAIGETE-------RRREKQQKYNEEHGITPQGLNKKVVDIL 597 +G A+ + D I +T R ++ + P +++ Sbjct: 400 GASGIAVTFVDWDEVPRWNLINKTLGLDFHEPRETYSTSEWFFKELGIPADAKGRLLKSE 459 Query: 598 ALGQNIAKTKAKGRGK 613 +A + + G+ Sbjct: 460 QTRAGLAAEEVEDLGE 475 >UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 Tax=Eukaryota RepID=DDX23_HUMAN Length = 820 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 121/348 (34%), Gaps = 25/348 (7%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P ++T +I + E + A E + +EE+ + + + Sbjct: 443 AAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAV 502 Query: 300 LGYCSGIENYSRF-LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 +G S + R + P L D L L++ ++V + + M Sbjct: 503 IGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPD 562 Query: 359 ETLVEYGFRLPSALDN---------RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + + FE + QT+ +AT + + Sbjct: 563 VQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLR 622 Query: 410 DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 V P ++ + + + + LL+ + + +++ K+ + L Sbjct: 623 RPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL--EQGFDPPIIIFVNQKKGCDVL 680 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + LE+ G LH +R + +L+ G D+LV ++ G+D+ +VS+V D Sbjct: 681 AKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYD 740 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 ++ I IGR R +G AI + K ++ + + Sbjct: 741 M-----AKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI 783 >UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Leptospira RepID=Q04Q15_LEPBJ Length = 549 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 62/451 (13%), Positives = 138/451 (30%), Gaps = 59/451 (13%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I P H + + I + + + + K L + R Sbjct: 46 QTGTGKTVAFLI-PVVHTILTKN-IQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAV 103 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + +E + + P L D + + + + + + + M Sbjct: 104 PIIGGTDYKSQNKDLEGLNGIIV-----ATPGRLIDMVKSGSIDISNVEFFVLDEADRML 158 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + + + Sbjct: 159 DMGFIQDIRWLLH-----------------KCKNRKQTLLFSATLSVEVMRLAYRFLNEP 201 Query: 412 VVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V T +D I ++ + + I + ++ T K + Sbjct: 202 VEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIVNSKDEGQG-IIFTNYKANIPKIVY 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L ++G + + S++D +R+ ++RD + G++ +V ++ G+D+ + +V D Sbjct: 261 TLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRYMVATDVASRGIDVENIDIVYNYDLP 320 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + + IGR AR GKAI + + + I + +++ + + NEE+ Sbjct: 321 -----QDTENYVHRIGRTARAGRMGKAIGFCSESDYVELEKIEKYLKQKIEILEVNEEYI 375 Query: 584 ITPQG------------------LNKKVVDILALGQN---IAKTKAKGRGKSRPIVEPDN 622 P G + G +G + + + Sbjct: 376 QFPTGKFPPFIGGDSYDREKEVHFKQNGRRPHDRGDRAPHKHDRDRRGDKRHTSHIHSHS 435 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D K I E E + + L E Sbjct: 436 PTRDSHKKKPAAAIQEAEFFLQKADSVLSAE 466 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 103/343 (30%), Gaps = 19/343 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + T+ +++ Y E + L+ G G L A +V Sbjct: 66 DADKTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYG-GASIENQIKRLKAGVDIV 124 Query: 337 VDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I + + + L E L + E + ++ SAT Sbjct: 125 VGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFFSAT 184 Query: 396 PGNYELEKSGGDV-------VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 L + + V++ T L + I + + L + Sbjct: 185 IPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNFYG- 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V TK +D+T L+ +H DI R + + + +LV ++ Sbjct: 244 -IVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAAR 302 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ ++ V + S + IGR R G AI + S I Sbjct: 303 GIDVSNLTHVINYSIP-----QEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQIKR 357 Query: 568 TERRREKQQKYNEEHGIT--PQGLNKKVVDILALGQNIAKTKA 608 + K++ I + VD + + + Sbjct: 358 VTKTDIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEE 400 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 111/363 (30%), Gaps = 13/363 (3%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + E G + ++ G+ F L +VV + + Sbjct: 92 TRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRR 151 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + D R L E L + Q SAT + + + Sbjct: 152 KSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFL 211 Query: 409 VDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLT 463 D + I ++ + + A + +++ T+ D+ Sbjct: 212 KDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIA 271 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E LE G L+ D++ +R I ++ G+ +LV +++ GLD+P +SLV D Sbjct: 272 EKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDL 331 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + + IGR R G +I + + Sbjct: 332 PGDN-----EAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNGTVLNYDLPNIQ 386 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 I + + V++ + + + E + +D++ L QK + Sbjct: 387 DIGKIRIERTRVEVAKIVADKDISSM-REIVEGMAAESEVSMIDLAAALLFQKQMKQPLQ 445 Query: 643 MMQ 645 + Sbjct: 446 PKE 448 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 13/324 (4%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + K + + + +++ L + + G P L D L Sbjct: 70 DADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRD-LARGPQ 128 Query: 335 LVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV + I G + D + L E L Q + S Sbjct: 129 IVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFFS 188 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQV--DDLLSEIRQRAAINER 448 AT + + + D + + P I + + E + Sbjct: 189 ATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYDA 248 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++V T+ L E+L G + L+ D+ +R I+ L+ G ++L+ +++ Sbjct: 249 MIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVAR 308 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+P ++ V D + S + IGR R G+AIL+ + Sbjct: 309 GLDVPRITHVINYDLPHD-----SESYVHRIGRTGRAGREGEAILFASHREVRSLSRLER 363 Query: 568 TERRREKQQKYNEEHGITPQGLNK 591 + + + + + Sbjct: 364 ITEGKIEVFDMPTAEQLGQARIER 387 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 110/338 (32%), Gaps = 44/338 (13%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + P L D+L + + + V + + M R + Sbjct: 120 HPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLL---------- 169 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVR 426 E A Q + SAT + S + +D +I Sbjct: 170 -------EATAADRQLMLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDT 222 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 T++D L I Q +V TK+ A +T L G V LH D+ V+R Sbjct: 223 REETKIDKLCEIINQE--QPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRT 280 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 +++ R E +L ++ GLD+ V+ V D + S I IGR R Sbjct: 281 LVLKRFRKAELQILCATDIAARGLDIEGVTHVFNYDIPHD-----AESYIHRIGRTGRAG 335 Query: 546 VNGKAILYGDKITPSMAKAIG--ETERRREKQQKYNEEHGITPQGLNKKVVDILALG--- 600 GKAI + + + + I +R R+++ + H + + K++ + Sbjct: 336 ERGKAITFVNARQYDLLRRIEGGIKDRIRKQRSERGRRHKEKQEQILKEIREKREEKKAK 395 Query: 601 -------QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 N KGR + ++ +A Sbjct: 396 RKPLSKYANRKGASHKGRNDRSRRQKAHGTKSNLGHRA 433 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 105/337 (31%), Gaps = 50/337 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + D H+ + + M R + Sbjct: 131 TPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEH--------------- 175 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDL- 435 QT SAT + + D V L I ++ A +D L Sbjct: 176 --TPKDKQTALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLD 233 Query: 436 -LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ I + N +++ T+ + L+E L G L ++ +R +I+ ++ Sbjct: 234 GLTRILEIEDWN-AIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKK 292 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ D+++ ++ G+D+ ++ V D + IGR R GKAIL+ Sbjct: 293 GKLDIIIATDVAARGIDIERITHVINWDIP-----GDVSTYTHRIGRTGRAGRSGKAILF 347 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + I + D K Sbjct: 348 CKPREQRIIRDIERATKSELI--------------------DYPMPSAEKLGEHRAAAFK 387 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 S + + +D + + E E ++ A ++ Sbjct: 388 STVVEHIEADKLDYFKAMITSWVDEGEHSLLDIAASM 424 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 122/369 (33%), Gaps = 39/369 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + + M Sbjct: 250 TPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVE-----------------TIL 292 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVR--PVATQVDD 434 + Q SAT + + + + + T ++ I + + Sbjct: 293 KEIPADAQRALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIE 352 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ + + + VL+ TK+ ++ E LE G V L+ D+ R I L++ Sbjct: 353 ALARVLEGEEFDG-VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKM 411 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ D++V ++ G+D+ +SLV D S + IGR R G AIL+ Sbjct: 412 GKLDIVVATDVAARGIDVDRISLVVNYDIP-----YDTESYVHRIGRTGRAGRSGNAILF 466 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQ---GLNKKVVDILALGQNIAKTKAKG 610 M K I + R+ + I+ + KV +++ G+ + Sbjct: 467 ITPREKRMLKTIEKATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVR 526 Query: 611 RGKSRPIVEPDNVPMDMSP--KALQQKIHELEGLMMQHAQ----NLEFEEAAQIRDQLHQ 664 + D V ++ + + I M Q Q NL EA + R + + Sbjct: 527 ALAAEGCNMKDGVALEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVR 586 Query: 665 LRELFIAAS 673 F+ S Sbjct: 587 TGRDFLGES 595 >UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi RepID=DDX21_HUMAN Length = 783 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 66/373 (17%), Positives = 122/373 (32%), Gaps = 34/373 (9%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 I + + I + E+++ R +L E + D+ Sbjct: 227 IAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK 286 Query: 298 NELGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G Y G P + D++ L + HV + ++ M Sbjct: 287 LSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLD 346 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV---- 408 A + + + DN PQT+ SAT ++ + + Sbjct: 347 MGFADQVEEILSVAYKKDSEDN------------PQTLLFSATCPHWVFNVAKKYMKSTY 394 Query: 409 --VDQVVRPTGLLDPIIEVRPVA---TQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDL 462 VD + + T +E + TQ ++ ++ + + R ++ TK+ A++L Sbjct: 395 EQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQEL 454 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++ + + LH DI +R ++ R G F VLV N+ GLD+PEV LV Sbjct: 455 SQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSS 513 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 K+ S I GR R G I + + + + K+ Sbjct: 514 PPKD-----VESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSA 568 Query: 582 HGITPQGLNKKVV 594 I + Sbjct: 569 TEIIKASSKDAIR 581 >UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C599_THAPS Length = 681 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 107/329 (32%), Gaps = 31/329 (9%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++ I Q G + R L E +++ Sbjct: 181 LKRGTHILCATPGRLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSAVR 240 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + G +D EV + LL Sbjct: 241 PDRQTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRLLQ 300 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE- 496 + A ++V+V + A+ L E L G +H +D +R + D + + Sbjct: 301 ILGDHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRVDS 360 Query: 497 -FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +VLV ++ GLD+P V + + +GR R G A + Sbjct: 361 GVNVLVATSVAGRGLDVPSCGCVVNYASPNH-----LEDYVHRVGRTGRAGNRGVAFTFV 415 Query: 555 D-----KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + K PS+ +A+ E + + Q+ NE + + K A + K Sbjct: 416 NSTDEAKFAPSIVRALVEAGQSKNISQELNELSESYKEKVAK-------GEARWASSGYK 468 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 G+G + E ++ + + I Sbjct: 469 GKGYTYDSSELNDSQKLAQLEKREALIEA 497 >UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHW2_LIBAP Length = 465 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 116/359 (32%), Gaps = 20/359 (5%) Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKET 360 + +NY+ ++ G P L +++ + G + Sbjct: 92 FEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILV 151 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + E L QT+ SAT + + S + + Sbjct: 152 IDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPS 211 Query: 421 PIIEV--------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 E ++ LL ++ Q + ++ K+ +L LE+ G Sbjct: 212 STAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS 271 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V +H +ID RM+I+ + + G ++V +L GLD+P+V V D Sbjct: 272 VCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVP-----NRA 326 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN-EEHGITPQGLN 590 + I IGR R GKA K AI + ++ + + ++ Sbjct: 327 ENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKID 386 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + A N K+ G + + + + +KI +L+ + ++ + Sbjct: 387 IAQHN-HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE---SEKISKLQQDIQENDAD 441 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 103/347 (29%), Gaps = 16/347 (4%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A ++ K + + T+ + ++ ++ G Sbjct: 179 AAFALPLLAHIDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLP 238 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +VV + + R D R L E L K Sbjct: 239 QLKALEGGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEV 298 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPVATQVDDLL 436 + SAT + + D + V P ++ L Sbjct: 299 PEGRISALFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALA 358 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + LV T+ AEDLT L G L D+ ER +++ LR G Sbjct: 359 RVL--AVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGT 416 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 DVLV ++ GLD+ + LV D R + + IGR R G++I + Sbjct: 417 LDVLVATDVAARGLDVDRIGLVVNFDVP-----RETDTYVHRIGRTGRAGRTGESITFVT 471 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + I + R +Q + ++ + V +A Sbjct: 472 PKERPRLRRIEKQTGSRMEQIELPTPAEVSKLRARRTVEQAMARVAK 518 >UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Mycoplasma mobile RepID=Q6KI10_MYCMO Length = 557 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGE--PPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + G E++ P L DY+ + L + V + + M Sbjct: 103 ITSLAIYGGMRNRESHFSIFKRGLDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMV 162 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + Q + SAT + + Sbjct: 163 D-----------------MGFIDDVKEILKRTKEEKQVMLFSATMPKAIMNLVEDFMGKF 205 Query: 412 VVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + T ++ +++ +LL ++ + I +V TKR A+++ Sbjct: 206 ELIQTESFAKPLQNIEHLAYFYTSSKPVELLQQMLKEEKI-YSAIVFVKTKRDADNVENL 264 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + ++ LH D R I+R + G+ +LV ++ G+D+ ++S V L+ Sbjct: 265 LSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQILVATDVASRGIDIDDISHVFNLNIP- 323 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 +GR R GKAI + K + + + + +++ + Sbjct: 324 ----EDPEIYTHRVGRTGRASKVGKAISFFSKRDFFLLAKVEKEIKMEIPKKQIQIIEDV 379 Query: 585 T 585 Sbjct: 380 I 380 >UniRef50_Q23WN3 Helicase conserved C-terminal domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23WN3_TETTH Length = 602 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 33/346 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I P T+ E ++++E + + L + Q++ Q + + Sbjct: 215 AIIIVPSTY-----ELACYYSQKLQEAGYPQIRCSLSIGGMDMMQQIAQVREGVHLIKYY 269 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + E Y P D + + ++ + + + ++ Sbjct: 270 GLMNNTFEIYEVVELQLDMVGTPGRTSDMVDKQKFNMNLCRYIVLDEADRLLDMIFEKEI 329 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + A QT+ S+T + + ++D ++ G Sbjct: 330 RNIIDH-----------------VPGARQTLLFSSTMPKKVQDFAKQALIDPIIVNVGRA 372 Query: 420 DPI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + I+ Q + L I VL+ +D+ EYL G V Sbjct: 373 GQVNLNVIQEVEYVKQEEKLQYLISCLQKTKPPVLIFCDKSNDVDDIHEYLLLKGIDVTS 432 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH ER + +++ + + DVLV ++ +GLD P V V D KE S Sbjct: 433 LHGGKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHVINFDMPKE-----IESY 487 Query: 536 IQTIGRAAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYN 579 + IGR R G+A + +K ++ + ++ + Sbjct: 488 VHRIGRTGRLGKTGRATTFVNKQQDENILSDLKMLLMEAKQPIPHF 533 >UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVN9_DYAFD Length = 481 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 59/336 (17%), Positives = 108/336 (32%), Gaps = 13/336 (3%) Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRG 353 + + LGY G S + G G L +++ I + G Sbjct: 88 QQIQGLGYFVGAT--SIAVYGGNKGPEWDQQKKALTQGADIIIATPGRLIAHLQLGYVHF 145 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-- 411 R L E L LK + QT+ SAT + + + + Sbjct: 146 RDLRHLVLDEADRMLDMGFLGDILKIMSYLPNERQTLMFSATMPPKIGDLAKRILKEPEE 205 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEH 469 + I+ + + + L + N +++ T K E + L + Sbjct: 206 IRLAVSRPADRIDQQFYLAKDEQKLPLLMHLLKGVENISMVLFTSRKSNVEPIVRALRKL 265 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G + SD + ER ++RD + +F +LV ++L G+D+ +S V D Sbjct: 266 GLGAHGISSDSEQGEREIVLRDFKNRQFPILVATDVLSRGIDIDNLSHVVNYDVP----- 320 Query: 530 RSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 R + IGR AR G A+ + ++ I + +++ E G+ Sbjct: 321 RDPEDYVHRIGRTARAESKGTAMTFINEQDQKYVLKIERLFEKELEKKSLTAELGLGEAP 380 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 L + + K S + P Sbjct: 381 LFEPPRLRSGGRNKKNRKKPAPGAPSGRKPHREARP 416 >UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Eukaryota RepID=DDX41_DROME Length = 619 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 92/272 (33%), Gaps = 17/272 (6%) Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D + +VV + + + D R + E + + F Sbjct: 303 LDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK 362 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 QT+ SAT + +V V G + +E +V LL Sbjct: 363 GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLD 422 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +++ A VL+ K+ + + EYL G +H D ER + R+G+ Sbjct: 423 CLQKTAPP---VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKK 479 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 DVLV ++ +GLD P V V D + + IGR R+ G A +K Sbjct: 480 DVLVATDVASKGLDFPNVQHVINYDMP-----DDIENYVHRIGRTGRSNTKGLATTLINK 534 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 T + KQ+ + + P+ Sbjct: 535 TTEQSVLLDLKHLLIEGKQEVPDFLDELAPET 566 >UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd) n=2 Tax=Hydrogenothermaceae RepID=C0QQC7_PERMH Length = 947 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 70/430 (16%), Positives = 133/430 (30%), Gaps = 41/430 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ + Q + E + G Sbjct: 436 PMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPTTVLSYQHYRNFKERLEPFGVV- 494 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +EN SR + +F + + V+ +H + + + Sbjct: 495 -VENLSRL----KSKKETEDIFKRVKEGKIDVIIGTHKALNENLKFKNLGLLVIDE---- 545 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + T+Y++ATP L + + D V T + Sbjct: 546 ----EHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVISTPPEGRVET 601 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDID 481 V+ +DL+ + +V ++ ++L G R+ H + Sbjct: 602 KTFVSIFSEDLIKKAVNFELERGGQVFYLHNRIESIKERADHLSSLFRGARIGIAHGKMR 661 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +II + + D+LV +++ G+D+P + + I AD G + L GR Sbjct: 662 PKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQ----LYHLRGR 717 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG- 600 R G Y + P + EK+ GL + D+ G Sbjct: 718 VGR---GNIQAYCYLLLP------PQITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGV 768 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI-HELEGLMMQHAQNLEFEEAAQIR 659 NI + G V +M K LQ+ I E++ + ++FE + Sbjct: 769 GNILGVEQSG--------HIKAVGYEMYLKLLQEAINEEMDRREREPVIQVDFE-SYIPE 819 Query: 660 DQLHQLRELF 669 D + +E Sbjct: 820 DFIPDPQERM 829 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 79/580 (13%), Positives = 176/580 (30%), Gaps = 111/580 (19%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + G TGS + A+ + T+V+ P++ ++ + ++ Sbjct: 5 IFGATGSYPEYITASTAKE---RTVVILPDRKRQKLFLNDLNAYLD---------FFKRD 52 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK 156 +P SD + + R +L+ +D + VA+ ++ D + + Sbjct: 53 IKVIELPESD------DPSDIESQIKRNLFLMYLLKGKDFIGVATEKSLDIKVDK-NFSE 105 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 ++ + G I++ ++ +L E Y R + G F V+G I ++ ++++L Sbjct: 106 RLIDIKTGSEINRDLLIHKLIESGYIREEYIENEGEFSVKGGFISVYIPFY--GVVQIDL 163 Query: 217 FDEEVER-----------------------------------------LSLFDPLT---- 231 F ++VE + LFD + Sbjct: 164 FGDQVESVFLKSKLETRKSINSVTIFPLYDKPLISRDGIDLQFRDIETVRLFDLIDKIDL 223 Query: 232 -------GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + + +E I + + L R+ V+L++ K Sbjct: 224 ITVDIYRQISDNQKIAIYSNGSNEKLLKKEDIDNSFKI--NRLPLRQPVVLKDEKTAFIP 281 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 +++ +++ + E Y + G E +D++ +L + Sbjct: 282 EDSKKVDLEIQPIKEGDYIIHEDFGIGIFRGIETREIRGKKYDFM----ILEYANNEKVY 337 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + R + ++ ++ N K + + T Sbjct: 338 VSYLHFDKIHRYKASGVITLDRIGGTSWRNLKRKVKNSLKKIAFQLVKLYTERKQIRRDP 397 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA-------------------- 444 D + P IE + D+ ++ Sbjct: 398 LVVENDLI-EAFERSFPYIETPDQLKAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRA 456 Query: 445 ------INERVLVTTLTK----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++ LV T + + E LE G V L E +I + ++ Sbjct: 457 VFINAVNGKQSLVLVPTTVLSYQHYRNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKE 516 Query: 495 GEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 G+ DV++G + L E L + L+ I + + G E+ Sbjct: 517 GKIDVIIGTHKALNENLKFKNLGLLVIDEEHRFGVRAKEK 556 >UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH3_9CHLO Length = 1063 Score = 158 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 20/291 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSAL 372 G T L +V I G + R L E Sbjct: 504 YGGSGVATQIGELKRGCEIVACTPGRMIDVLTTGAGRITNLRRVTYMVLDEADRMFDMGF 563 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEV 425 + + + QT+ SAT + + + + V G ++ I+E+ Sbjct: 564 EPQITRIMNNLRPDRQTVMFSATFPHAMEALARSALTNPVEIQVGGRSVVNSDIEQIVEM 623 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 R + +L + + ++++ ++ + + L G LH + +R Sbjct: 624 RAEEDRFLRVLELLGEWYERG-KIIIFVASQDKCDQVFRDLLRSGYPCLSLHGGKEQSDR 682 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 I D + ++LV ++ GLD+ + LV D + +GR R Sbjct: 683 ECTIADFKSDVCNILVATSVAARGLDVSGLRLVVNYDTPNH-----LEDYVHRVGRTGRA 737 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G A+ + + A + + + +Q + + KK + Sbjct: 738 GNKGTAVTFISQEEEKFAPDLVKAM--TDAKQPVPSDLRLMADEYAKKKKE 786 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 95/303 (31%), Gaps = 13/303 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G + L +V+ + + R L E L Sbjct: 109 YGGVSQKRQEEALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKD 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQ 431 + QT+ SAT S +V+ T LD I + + + Sbjct: 169 VTSIVDKTPKKRQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNK 228 Query: 432 VDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L I + VLV T TK A L + L G +H R + Sbjct: 229 ANKTLLLIDLIYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALA 288 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 + + G+ +LV ++ G+D+ + V + + I IGR R G + Sbjct: 289 NFKKGKTKILVATDIAARGIDIEALDYVINFELP-----EVPETYIHRIGRTGRA--GLS 341 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + PS K + + E+ + + ++ V L + +K + K Sbjct: 342 GMALSLVDPSEQKLLTQVEKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKP 401 Query: 611 RGK 613 + + Sbjct: 402 KKE 404 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 21/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAIN 446 + ++ATP L + + D + T +I V + I + Sbjct: 303 DVLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILRG 362 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V E L++ R H + + + I+ D F+VLV Sbjct: 363 GQVYYIYNNVNKIERKKIELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCST 422 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P V+ + I +A+ G + L Q GR R+ + Y + PS+ K Sbjct: 423 IIETGIDIPNVNTIIIENANNFGLAQ----LHQLRGRVGRSQHQ---AYAWLLVPSL-KD 474 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I ++R E G D+ G + + Sbjct: 475 IKSDAKKRIDAITSIESFG---SCFELANRDLEIRGIGEILGNNQSG-------HITKIG 524 Query: 625 MDMSPKALQQKIHELEG 641 + K L + ++ Sbjct: 525 FSLYMKLLMNAVRNIKN 541 >UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=34 Tax=Dikarya RepID=PRP5_ASPTN Length = 1181 Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 104/315 (33%), Gaps = 26/315 (8%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R L E + + +K Sbjct: 669 LKRGAEIVVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVR 728 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G + I+EVR + LL Sbjct: 729 PDRQTVLFSATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLE 788 Query: 438 EIRQRAAINE----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + + +E R L+ + A+ L L G +H D ++R I D + Sbjct: 789 LLGNLYSSDENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFK 848 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G F VL+ ++ GLD+ ++ LV DA + GR R G A+ Sbjct: 849 AGIFPVLIATSVAARGLDVKQLKLVVNYDAPNH-----LEDYVHRAGRTGRAGNTGTAVT 903 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + + I + ++ ++ Q ++ + + A + + + G+G Sbjct: 904 FLTEDQERFSVDIAKALKQSGQKVPEP-----VQQMVDSFLEKVKAGKEKASASGFGGKG 958 Query: 613 KSRPIVEPDNVPMDM 627 R E D M Sbjct: 959 LERLDQERDAARMRE 973 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 87/279 (31%), Gaps = 17/279 (6%) Query: 331 ADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + V + + G + + L E L + QT Sbjct: 131 KGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQT 190 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRA 443 + SAT + + + + + + + I Sbjct: 191 LLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDY- 249 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + ++ T TK+ A+DL L G V LH D++ +R ++++ L G +LV Sbjct: 250 ENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVAT 309 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ GLD+ ++SLV + S IGR R +GKA+ Sbjct: 310 DVAARGLDVKDLSLVINYHLPFD-----SESYTHRIGRTGRAGKSGKAVTLVTTRESRAL 364 Query: 563 KAIGETERRREKQQKYN---EEHGITPQGLNKKVVDILA 598 + T E H + KKVVD Sbjct: 365 LRLKGTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTEI 403 >UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Nasonia vitripennis RepID=UPI00015B57D6 Length = 715 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 98/294 (33%), Gaps = 30/294 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + L V S++ + + M + R Sbjct: 404 TPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRP------------ 451 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-------ATQVD 433 QT+ SAT + + + G LD + Sbjct: 452 -----DRQTVMTSATWPPGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKT 506 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D+L + A +++V+V K +D+ L G + +H + +R + + D++ Sbjct: 507 DVLKDFFHNMAPSDKVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIK 566 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ ++L+ ++ G+D+ +++ V D F R + +GR R G++I Sbjct: 567 TGDVNILLATDVASRGIDIEDITHVFNYD-----FPRDIEEYVHRVGRTGRAGKTGESIS 621 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + K + + E++ KK D + ++ Sbjct: 622 LVTRRDWGLTKELIKILEEAEQEIPTELYSMSERYEAMKKKRDEERGDGDRRES 675 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 95/320 (29%), Gaps = 38/320 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ L++ D + + + M ++ GF + F Sbjct: 139 TPGRLLDHFERGKLILNDVKVMVVDEADRM-----------LDMGFIPDIERIFGLVPFT 187 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQ------ 431 QT++ SAT + + + IE R + + Sbjct: 188 ------RQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDA 241 Query: 432 -----VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D L + I ++ K + + + L++H +H D+D RM Sbjct: 242 QAKMKRDMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRM 301 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + R G +LV ++ GLD+P VS V D + IGR R Sbjct: 302 RTLAGFRDGSITLLVASDVAARGLDIPNVSHVINYDVPSH-----AEDYVHRIGRTGRAG 356 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN-KKVVDILALGQNIA 604 G AI AI ++ + + + G K ++ Sbjct: 357 KTGVAITLCVPSDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDKPRRSRRGGRRSEE 416 Query: 605 KTKAKGRGKSRPIVEPDNVP 624 + + + P + Sbjct: 417 PKAEEKQADAAPEPAREEAK 436 >UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DES1_TRIVA Length = 640 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 122/382 (31%), Gaps = 41/382 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P +V + Q R + + + L + L Sbjct: 154 AFIIPCLLHVLAQPPTGQYEAAAVILSPTRELAYQTHIECQKIFSLMDK------KSACL 207 Query: 301 GYCSGIENYSRFLSGRGP--GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + IEN R + P D L + + S++ I + M+ + Sbjct: 208 VGGNDIENQLRAIKNGSNVIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQ 267 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 ++ E QT+ SAT + + + + + G Sbjct: 268 V-----------------IRIAERMRKDRQTLMFSATFPHTVERIARKLLQNSIEIVVGL 310 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 ++ I V + + LL + + LV T T+ AEDL L + G Sbjct: 311 RNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQG-QALVFTNTQDRAEDLFGKLNKSGY 369 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 V LH +D+ +R I+ D R G F VLV ++ G+D+ + V DA Sbjct: 370 SVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGARGIDIASIICVINYDAP-----DH 424 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 E + +GR R G A + + A I ++ + ++ QG+ Sbjct: 425 EADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAGIKNAMKK--SGCEIPKDLEDLCQGVK 482 Query: 591 KKVVDILALGQNIAKTKAKGRG 612 ++ G K + + Sbjct: 483 APGLNGFWRGSGFKFDKEEAKS 504 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 60/419 (14%), Positives = 123/419 (29%), Gaps = 21/419 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 +D T + + I + + + N K + + L Sbjct: 21 YDAPTQ--IQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKLSSKERNKKRPQTRVL 78 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP- 345 +L S + G L + +VV + Sbjct: 79 VLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALKSGIDIVVATPGRLLDL 138 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + E + + + Q + SAT + + Sbjct: 139 ALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLFSATYPSEVMSLCN 198 Query: 406 GDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + D + + + + +LL+E+ +I+ + LV T TKR A Sbjct: 199 SMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGVESID-QALVFTRTKRSA 257 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + + YL G V LH D R + + + G+ +LV ++ GLD+ E+ V Sbjct: 258 DKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVATDIAARGLDIKELPFVI 317 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 L+ + IGR R +G AI I + ++ ++ + Sbjct: 318 NLELP-----NVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEKLIDKKLIRESF 372 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 + + + GQN+ K+ + I + + P + + + Sbjct: 373 SGFEADL-----RVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDKKDESKR 426 >UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Sulfurihydrogenibium RepID=B2V9E1_SULSY Length = 938 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 132/413 (31%), Gaps = 40/413 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ + + Q + E + G Sbjct: 432 PMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTTVLAYQHYKKLKERLEPYGII- 490 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++N SR + + V+ +H + + + + Sbjct: 491 -VKNLSRL----KSKKENDNTIKAFEEGKIDVLVATHKILHTNLSFNKLELLVIDE---- 541 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + T+Y++ATP L + + D V T Sbjct: 542 ----EHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKDISVLNTPPEGRYEI 597 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDID 481 V+ ++L+ I N +V ++ ++L+ +V ++H + Sbjct: 598 KTYVSNFDEELIKKAIEFEIDRNGQVFYLHNRIETIKETADFLKNLVKKAKVDFIHGKMK 657 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + I D G+ +VL+ +++ G+D+P + + + AD G + L GR Sbjct: 658 PSEIEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFGLAQ----LYHLRGR 713 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG- 600 R G Y I P K I + +RR G GL + D+ G Sbjct: 714 VGR---GNIQAYCYLIVP---KEITKDAKRRIDTLLKLTRPG---SGLKVSIEDMQIRGP 764 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM-QHAQNLEF 652 NI + G KS + D K L++ I+E G + ++F Sbjct: 765 GNILGVEQSGFIKS--------LGFDYYVKLLKEAINEERGEKEFEAEIEIDF 809 Score = 109 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 75/564 (13%), Positives = 177/564 (31%), Gaps = 96/564 (17%) Query: 52 VIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 ++ ++P ++ ++ A + + +K + ++ + PSS EK Sbjct: 14 LLIQKEKPLFLITDSEKSAKESFLNLKAY---------KDFFKKDLEIIHFPSSQ---EK 61 Query: 112 DASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQR 170 +++ R A +L ++ ++V S A+ + +LK ++++ +++ Sbjct: 62 LDLLSQ---IERNYAIYKILAGKNWILVFSKDALNVKVRTKENFLKDIINIKKSGELNRE 118 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 ++ +L +L Y R + G F VRG + I + ++ F + +E + L + Sbjct: 119 FLIEKLYKLGYIREEFPENEGEFSVRGGFLSINIP--KVGIVDIDFFGDTIENIFLKSKI 176 Query: 231 TGQIVSTIPRFTIYPKTHY--------VTPRERIVQAMEEIK------------------ 264 I +I P + + E + +K Sbjct: 177 --LTRKEIEEISILPLYDFNIKSQTPLIFEDEESTFFRDYLKNDIYTLDIYEDLNLPIKG 234 Query: 265 ------------------EELAARRKVLLE-----NNKLLEEQRLTQRTQFDLEMMNELG 301 +E A + L + N K + ++ + D+E + E Sbjct: 235 QFFSKFSNPEVGTIKDITQEFAVYKIPLKKELVLLNEKTAFLLEVEEKLELDVEPLKEGD 294 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFD---------------YLPADGLLVVDESHVTI-- 344 Y + G E ++D YL D + + Sbjct: 295 YIIHEDFGIGIYRGIETREIRGKVYDFMILEYSGGEKVYVSYLHFDKIHKYKTDSIIQID 354 Query: 345 ----PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + + + + S N + + Sbjct: 355 KIGGTSWRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKTDDELISKFEREFPFVETP 414 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK---- 456 + + ++ +I + + + I + L+ T Sbjct: 415 DQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTTVLAY 474 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEV 515 + + L E LE +G V+ L E I+ G+ DVLV + +L L ++ Sbjct: 475 QHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHKILHTNLSFNKL 534 Query: 516 SLVAILDADKEGFLRSERSLIQTI 539 L+ I + + G ++++ + Q Sbjct: 535 ELLVIDEEHRFG-VKAKEKIRQIR 557 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 92/317 (29%), Gaps = 18/317 (5%) Query: 323 PTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + L ++V + I R L E K Sbjct: 140 GPQINALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVA 199 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDD 434 A +T SAT + + + + +D + + + Sbjct: 200 MLPEARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSR 259 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + + A RV+V T TKR A+ + E L G H + R + D + Sbjct: 260 LHTILADEACK--RVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMM 317 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G VLV ++ G+D+ ++ V D + + + +GR AR +G AI Sbjct: 318 GHIRVLVATDIAARGIDVSNITHVVNFDMPLD-----PETYVHRVGRTARKGNSGIAISL 372 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 D AI +++ + + G ++ G + Sbjct: 373 CDPGERQEITAIERMMKQKLEVIA--DVGGEALPMPERRQHHRAETGPRRDGDRQHHHAG 430 Query: 614 SRPIVEPDNVPMDMSPK 630 R + + Sbjct: 431 GRRDGREGGQRGERPAR 447 >UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium difficile RepID=Q185X0_CLOD6 Length = 497 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 116/335 (34%), Gaps = 43/335 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ + + + ++ I + M+ + K Sbjct: 128 TPGRILDHINRGSIKLENVKYLVIDEADKMFNK-----------------GFVEQMEKIL 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD------ 434 SAT ++D V + + Q+DD Sbjct: 171 LNLPKEKIVSLFSATIDEEIKYICEKYMLDYSVINIE--ENESDTNQKTRQIDDKIIKAN 228 Query: 435 ------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 LL E+ + + V++ TK L + + G +R LH+D+ R+ + Sbjct: 229 GREKYILLKELI-YSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFV 287 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 I+D + +F++LV ++ G+ + ++SLV D + + + I IGR R + Sbjct: 288 IKDFKNQKFNILVSSDVASRGIHIDDISLVINYDVP-----QDKENYIHRIGRTGRKGNS 342 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 GKAI + + I K NE I + V + I K Sbjct: 343 GKAITIVTEKDEKYIENIETYIGY-----KINELTDIEQSRITHGKVLFEEYSKGILKKV 397 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 +K + + + ++ +++ + ++ ++ + Sbjct: 398 SKRKKVDKNSYKSKDIKLNIESEVVKLYLNAGKKK 432 >UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphingobacteriales RepID=Q11WD3_CYTH3 Length = 463 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 114/357 (31%), Gaps = 33/357 (9%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G P ++L ++V + + K ++ E + + Sbjct: 109 YGGIGPKLQKEHLQKGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQ 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-------VDQVVRPTGLLDPIIEVRPV 428 K E Q + SAT + + V P L+ + P Sbjct: 169 LRKMLEVIPRKRQNLLFSATMSERVERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPN 228 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERME 487 LL + ++ R ++ TK+ A+D+ +++ R +H++ D R+ Sbjct: 229 FKTKIHLLEYLIRKDESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRIN 288 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + D + G +LV ++ G+D+ EVS V D I IGR R + Sbjct: 289 AMDDFKDGTIKILVATDVAARGIDVHEVSHVINFDVPI-----IYDDYIHRIGRTGRANH 343 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G AI + + + I + R + ++ IT G + A + K Sbjct: 344 TGVAITFATEAEMYHIEKIEKIIRMQIPVEELPAAVEITETGFEES--QEFARELDFYKK 401 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 K A +K +L+G Q A A+ ++ Sbjct: 402 KEDP----------------TYKGAFHEKKRDLKGDAKQTAYKPGKSVKAKPSKEIR 442 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 99/303 (32%), Gaps = 10/303 (3%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + +T + ++ EL + + + L+ G G P D L ++ Sbjct: 68 KSNKPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYG-GVPLRAQADSLAKGAHIL 126 Query: 337 VDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + G + + L E L +K QT+ SAT Sbjct: 127 IGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTLLFSAT 186 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTT 453 + + D + + +++ + + D + + +L+ Sbjct: 187 FPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYETPDKFKTLNALIGSYKPDSLLIFC 246 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK L + L++ G V +H D+D ER E + ++V ++ GLD+ Sbjct: 247 NTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVASRGLDIK 306 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRR 572 ++SLV D + + IGR R G AI I ++ Sbjct: 307 DISLVINYDLPFD-----KEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQAKQA 361 Query: 573 EKQ 575 + + Sbjct: 362 DPK 364 >UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiothermus RepID=C1XGK2_MEIRU Length = 556 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 68/359 (18%), Positives = 112/359 (31%), Gaps = 18/359 (5%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 +A R E + LT + L++ EL + + + G Sbjct: 59 IANRLDAARERGRAPRALILTPTRELALQVAKELEWLAPHLTITPIY----GGTGYGKQA 114 Query: 327 DYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L +VV I + + R L E L + + E Sbjct: 115 EALKRGTDVVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPP 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQ 441 QT+ SAT + S + + I + ++ +LS++ Sbjct: 175 TRQTLLFSATLPTWARRLSERYQKAAIHINVIKDEAISYEEVAIQAPIHNRLSVLSDLL- 233 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A ER +V T TK DL LE +H D+ ++R ++ R G VLV Sbjct: 234 FAYAPERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLV 293 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+PEV LV S + GR R GK ++ Sbjct: 294 ATDVAARGLDIPEVDLVVHYRLP-----DQNESYLHRSGRTGRAGRSGKVVILYGPREKR 348 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + +R K+ + ++ Q A K R I E Sbjct: 349 ELETLERELKRNFKRVNPPTPEEVMAAKW--AMLARRIAKQPEADKKLWREQAERLIAE 405 >UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N623_PHYIN Length = 823 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 57/359 (15%), Positives = 110/359 (30%), Gaps = 42/359 (11%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 ELA + + L ++ + G + + P Sbjct: 446 RELALQIEQEAIKLCKHTSVGLPEKMNPIKTLSVVGGQSIEDQGFRLREGVEIIIGTPGR 505 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV--EYGFRLPSALDNRPLKFE-- 380 L D L + L++ ++V + + M + V G L S + + Sbjct: 506 LMDCLESHYLVLNQCNYVVLDEADRMIDMGFEPQVVAVLENMGSLLKSENEEEMEQQLTL 565 Query: 381 -------EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP------ 427 EF+ T SAT + + + G D R Sbjct: 566 ANRAQLGEFQHRLRVTTMFSATMPVEVERLAKTFLRHPSIVKIGDEDSGKNKRIEQRVMF 625 Query: 428 -----VATQVDDLLSEIR------------QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 +++ ++L +I ++ +++V K+ + + +++ G Sbjct: 626 MNPGKKRSKLVEVLRDILSAQNVPVPRSRKEKVVDGAKIIVFVNIKKECDSVAKFISSEG 685 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R LH +R E ++ R G D+LV ++ GLD+P+V+ V D Sbjct: 686 FRCTILHGGKTQDQREESLKMFREGYCDMLVATDVAGRGLDIPDVTHVVNFDLPS----- 740 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 ++ IGR R +G AI + + + E E P Sbjct: 741 KIQNYSHRIGRTGRAGKDGVAISLLTDDDEEIMYDLKQYLVSTE--MPVPSELANHPSA 797 >UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=Q6BG49_PARTE Length = 1157 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 118/353 (33%), Gaps = 25/353 (7%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R + E + + K + Sbjct: 624 LKRGTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKIIQNIR 683 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 Q + SAT + + + + G ++ IIE + ++ LL Sbjct: 684 PDRQLVMFSATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQIIEFMDESDKLYKLLL 743 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ +L+ + A+DL + L ++G + LH +D +R I D + G Sbjct: 744 LFQEWYTKG-SILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDFKKGIR 802 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++V ++L GLD+ + LV I IGR R G AI + Sbjct: 803 TIMVATSVLARGLDIKHICLVIN-----FSCPNHMEDYIHRIGRTGRAGQKGTAITFFTP 857 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 +A + + E+Q E+ + + + A I + K + G Sbjct: 858 QDEHLANDLVYLLEKSEQQL--PEKLKEYQKSF---MEKVKAGEAKIYRNKNRAGGGFTF 912 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 E + D + ++ LEGLMM + + + +I E Sbjct: 913 GPEEEQKFQDFRAQMRKKF--GLEGLMMDEQSSDDEKVLEEIAKGKLSEEERL 963 >UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyostelium discoideum RepID=DDX23_DICDI Length = 834 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 85/281 (30%), Gaps = 16/281 (5%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + Y P L D L L++ +++ + + M + Sbjct: 525 GGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQV 584 Query: 360 ----TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + F + + + + TI SAT + S + Sbjct: 585 TSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTIT 644 Query: 416 TG----LLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEH 469 G ++D I + +D + Q +++ K+ + + LEE Sbjct: 645 IGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEEC 704 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 LHS +R + + +++VL+ + G+ + V+ V D Sbjct: 705 RVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIP----- 759 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 ++ IGR R + G A + + + + Sbjct: 760 KNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQIL 800 >UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001B1BBE4 Length = 547 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 28/275 (10%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + P L +++ + + ++ M D Sbjct: 240 FVCYGGTLVSHQKNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDL 299 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV--- 412 + F +PS +D QTI +SAT + + + Sbjct: 300 KPDIDKILDHFSMPSVMDR-------------QTIMLSATLPDATQHLAKFYLNKNYLFL 346 Query: 413 ---VRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 + + D V D+L+ I ++ ++ +V K A+ L YL E Sbjct: 347 AVGIISSASKDIKQNFCLVNRFNKRDILTSILKKDSVG--TIVFVNQKWTADFLATYLCE 404 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 +H D +R + D R + +VLV + GLD+ V+ V D Sbjct: 405 KHIPSTSIHGDRLQDQREIALDDFRTRKMNVLVATTVAARGLDIKCVNHVLNYDMPL--- 461 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 +Q IGR R G A D + Sbjct: 462 --VIEEYVQRIGRTGRLGNKGIATSLFDPDEDYLL 494 >UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=Alteromonadales RepID=A0KZD5_SHESA Length = 487 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 90/313 (28%), Gaps = 29/313 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P LFD + L + + + I + M R V+ Sbjct: 150 TPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKR---------------- 193 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ--VVRPTGLLDPIIEVRPVATQVDDLLSE 438 A QT+ SAT + + S + V +E Sbjct: 194 -LIATEHQTMLFSATYSDAVKQLSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAEL 252 Query: 439 IRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + N +VLV TK AE L + L G H D R ++ D + G+ Sbjct: 253 LSELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGK 312 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 VLV ++ GLD+ + LV L+ + IGR R +G+AI + Sbjct: 313 LRVLVATDVAARGLDIQALPLVINLELPFL-----AEDYVHRIGRTGRAGLSGRAISFVS 367 Query: 556 KITPSMAKAIGETERRREKQQKYN--EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 M I + EE P + D + K+ K Sbjct: 368 PADDEMLAEIEALIGQTLPVTVQPGYEEGTPLPARYREAPTDTTKTAKWNYKSSRNTGAK 427 Query: 614 SRPIVEPDNVPMD 626 Sbjct: 428 GAGGNGTKANGSK 440 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 104/341 (30%), Gaps = 19/341 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + + R D R L E L + Sbjct: 200 LARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTR 259 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIR 440 Q SAT + + D V V P + L + Sbjct: 260 QVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVL- 318 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + E +V T+ AE++ L G + D+ ER +I+ LR G VL Sbjct: 319 -ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVL 377 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ + LV D KE S + IGR R G+A+ + Sbjct: 378 VATDVAARGLDVERIGLVVNFDVPKE-----AESYVHRIGRTGRAGRSGEALTFIGPHER 432 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K I ++ + ++ L ++ + A + + + E Sbjct: 433 RALKNIERATKQTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELY-RELIGQFVAE 491 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 D P++++ + + + EF A D Sbjct: 492 HDIDPLELAAALGAMSVGDEG--PGTATEEEEFTGAKLGED 530 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 85/283 (30%), Gaps = 36/283 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ L + + + + M L Sbjct: 138 TPGRLMDHMERGRLDLSGVEVLVLDEADRM-----------------LDMGFREAVEFIA 180 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-------TQVD 433 QT+ +AT + D V + Sbjct: 181 AACPAERQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKH 240 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + + +V TK A+ L + L E G + LH D+ +R +++ LR Sbjct: 241 RLLETLLGGEEFGKG-IVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLR 299 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +V+V ++ G+D+ +++ V D K + IGR R +G + Sbjct: 300 DGRINVIVATDVAARGIDIADLTHVINFDLPK-----QAEDYVHRIGRTGRAGASGVSYS 354 Query: 553 YGDKITPSMAKAIGETERRR-----EKQQKYNEEHGITPQGLN 590 ++ +AI + + E P G N Sbjct: 355 LFTRMEWRQVRAIEAYTNKAADMHVLPGLEPMPEPERRPGGFN 397 >UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C8J5_THAPS Length = 663 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 94/271 (34%), Gaps = 34/271 (12%) Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D+L + + ++ + + M L D Sbjct: 354 HCVVATPGRLRDFLKKRSINLDICRYICLDEADRM-----------------LDLGFDEE 396 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVAT 430 + QTI SAT + + +V VV G LD I EV V Sbjct: 397 VGEIMNHFHHQRQTILYSATFPKKFQDFAKQTLVRPVVVNVGRAGAANLDVIQEVEYVKQ 456 Query: 431 --QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 ++ LL +++ A V++ K +D+ EYL G +H D ER E Sbjct: 457 EAKIVYLLECLQKTAPP---VVIFCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEA 513 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 I + G+ DVLV ++ +GLD ++ V D E + + IGR R Sbjct: 514 IALYKAGKKDVLVATDIAAKGLDFADIQHVINFDMPSE-----IENYVHRIGRTGRCGKT 568 Query: 548 GKAILYGDK-ITPSMAKAIGETERRREKQQK 577 G A + +K + + + ++ Sbjct: 569 GVATTFINKSCEETTLLDLKHLLKEAHQRIP 599 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 100/329 (30%), Gaps = 14/329 (4%) Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKE 359 G+ S + ++ G + L A ++V + I G+ + Sbjct: 95 GFESFGRHQPPSVTTIFGGVSQVHQVNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEAL 154 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 L E L + T+ SAT + + D Sbjct: 155 VLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSIATLAESLLRDPAKVEIAPP 214 Query: 420 DPIIE-----VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 ++ V V R + +V TL K +A ++ ++ E G Sbjct: 215 STTVDRIEQSVMFVDAADKKAALLAMLRTPGIGQAVVFTLQKNIANEVCAFITEAGITAE 274 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH + +R + R G VLV ++ G+D+ V+ V D S Sbjct: 275 ALHGNKSQGQRERALDAFRSGTAQVLVATDIAARGIDVDTVTHVFNHDLPSL-----PES 329 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + IGR R G AI D + + + R Q + H + N + Sbjct: 330 YVHRIGRTGRAGRNGFAITLCDAEQRAWLRDVEREIGRALIVQDDHPWHSEAAR--NSTM 387 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + G + K + + + + E + Sbjct: 388 RPPVLGGAPAKEVKPQKKRERKVWTEEEK 416 >UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D315_PARTE Length = 1127 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 98/275 (35%), Gaps = 33/275 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + +++ I + + L ++ Sbjct: 234 CPGRLKDFLQEGILDLSKVTYLVIDEADRL-----------------LDMGFEDDVRFIV 276 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPTGLLDPIIEVRP-------VATQV 432 + QT++ SAT S D + G + + Q Sbjct: 277 QRTRQDRQTVFFSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLYNNQK 336 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L +I + IN++VL+ T+ E L+ + + G LH + +R I+ Sbjct: 337 LQTLLDILDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECY 396 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G+ +L +L GLD+ ++++V D F + I IGR R G+AI Sbjct: 397 KKGDTKLLCATDLASRGLDVSDITVVINYD-----FPKYFDDYIHRIGRTGRAGRKGRAI 451 Query: 552 LYGD--KITPSMAKAIGETERRREKQQKYNEEHGI 584 + K P MA+ + + ++ + + I Sbjct: 452 SFFAIGKDQPQMARELLKFDKINKMKLDVQTMQDI 486 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 98/277 (35%), Gaps = 28/277 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L D ++ +H+ + + M + +D+ + F+ Sbjct: 143 TPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGF----------------MDDLEVIFK 186 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLS 437 QT+ SAT + + D IE + D S Sbjct: 187 AMPET-RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTS 245 Query: 438 EIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + +++ TK+ DL LE G + L+ DI +R +I L+ G Sbjct: 246 AVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDG 305 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 D++V ++ GLD+P ++ V +D S + IGR R G+A+L Sbjct: 306 RLDIVVATDVAARGLDVPRITHVFNVDMP-----YDPESYVHRIGRTGRAGREGRALLLV 360 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 M + I ++ + + + + + K Sbjct: 361 TPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKK 397 >UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D361_PARTE Length = 813 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%) Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +++ + + + + L E L +++ + QT++ SA Sbjct: 559 VIISTPGRLLDFMKDGLPLNSITQVVLDEADRMLDMGFEDQITQILSAVRDDRQTLFFSA 618 Query: 395 TPGNYELEKSGGDVV-DQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T N + D ++ G + EV V + +E+ R + Sbjct: 619 TWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKFAELTDRLK-GQ 677 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++L+ K + L L HG + RYLH D+ ER +I+ + + G + L+ NL Sbjct: 678 KLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINCLITTNLAS 737 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 GLD+ +V +V D F + I IGR R G+AI Sbjct: 738 RGLDVSDVDVVINYD-----FPDTIEDYIHRIGRTGRAGKKGQAIS 778 >UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9SPHI Length = 399 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 31/243 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + M + G Sbjct: 180 TPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGG--------------- 224 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVD 433 QT+ SAT + + + V ++ I P Sbjct: 225 --MTQREQTMLFSATLEPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKF 282 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +L+++ Q A++ +V+V T TKR+A+ L++ L + G + +H + R + I + Sbjct: 283 GMLADLFQNRAMD-KVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFK 341 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 GE VLV ++ G+D+ +VS V + S I IGR R G AI Sbjct: 342 SGETRVLVATDVAARGIDVADVSHVINYQLPM-----TMDSYIHRIGRTGRAGKTGHAIT 396 Query: 553 YGD 555 + + Sbjct: 397 FVN 399 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 105/320 (32%), Gaps = 15/320 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + ++ L + L++ +EL + R + G P L +V Sbjct: 77 ESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSV-CLYGGAPIEKQITTLKKHPQIV 135 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + + D+ L E L + + + SAT Sbjct: 136 VATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFSAT 195 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINE--RV 449 ++ S D V + I + R D L + R Sbjct: 196 ISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERA 255 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + TK M + L+ L+ G + +H DI R + ++ R G+ VLV ++ G Sbjct: 256 IAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARG 315 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM-AKAIGE 567 LD+ +V +V D E I IGR R G A IT M + I + Sbjct: 316 LDIDDVDVVFNYDVPDE-----IEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAK 370 Query: 568 TERRREKQQKYNEEHGITPQ 587 + KY+++ + P Sbjct: 371 NTKADITVLKYDKDGCLLPA 390 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 114/401 (28%), Gaps = 45/401 (11%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ P ++ + + E + + N + + L Sbjct: 200 QTGTGKTASFTL-PMLEILSDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHA 258 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D GL++ + I + M Sbjct: 259 LLI-----GGESMADQKEVLNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRML 313 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT+ SAT + + + Sbjct: 314 DMGFIPDIEKIVG-----------------LLPPNRQTLLFSATMAPTIRKLADAFLHSP 356 Query: 412 VVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + I V ++ + L ++ A N +V KR + LT+ Sbjct: 357 KEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQN--AIVFCNRKRDVDILTK 414 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L +HG LH D+ R + + E VLV ++ G+D+ +S V D Sbjct: 415 SLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGLSHVFNFDLP 474 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN---- 579 + IGR R G A ++A+AI + + + + Sbjct: 475 -----FHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEKLTGKEIPRMALDGVKQ 529 Query: 580 ---EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + P G +K +N T + + +++P Sbjct: 530 LEWSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEAKPQ 570 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 83/285 (29%), Gaps = 15/285 (5%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV I + + D+ + L E L + K Sbjct: 118 LKRGVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDR 177 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT SAT + V ++ + + P L I Sbjct: 178 QTALFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPIL 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 E L+ T+R A +LT L+ G V H D+ R ++ R + + Sbjct: 238 -EMEDPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWV 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ ++S V D S + + IGR R G AI Sbjct: 297 VATDIAARGLDVDQLSHVINYDLP-----DSVETYVHRIGRTGRAGKEGTAITLVQPFER 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + R+ + I + + K + Sbjct: 352 RKQQIFERHVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGER 396 >UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 n=2 Tax=Hydra magnipapillata RepID=UPI00019259AA Length = 790 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 91/308 (29%), Gaps = 31/308 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + A ++ +++ + M+ + + R Sbjct: 406 TPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRP------------ 453 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 Q + SAT + D + G L +EV Q Sbjct: 454 -----DRQCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKW 508 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + L VL+ K +E++ L+E G + +H D D ER +++ + Sbjct: 509 NWLLSHIVEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFK 568 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 +F +LV ++ GLD+P + V D ++ + IGR R G A Sbjct: 569 QKQFLILVATDVAARGLDIPSIKTVINYDVARDITTHT-----HRIGRTGRAGEKGIAYT 623 Query: 553 YGDKITPSMAKAIGETERRREKQQ-KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 A + ++ + + K N T Sbjct: 624 LITPQDTHFAADLVRNLEGANQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRP 683 Query: 612 GKSRPIVE 619 G P + Sbjct: 684 GLGLPEGK 691 >UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30P62_SULDN Length = 411 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 31/301 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 D L +++ + + M Sbjct: 132 TSGRFLDILSKKQMILSHVDFFVLDEADKMLDF-----------------GFAEELELIL 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 E Q + SAT L + + + + +P +E + Sbjct: 175 EALGQKRQNLLFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILVSRENRAP 234 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + ++ E V+V +KR A+++ +HG H D+ +R + + + Sbjct: 235 LLRHLL-KSEKYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKT 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + +L +L+ GLD+ +++ V D RS I IGR AR G AI + Sbjct: 294 KKLQILFATDLVSRGLDINDITCVINFDLP-----RSSADYIHRIGRTARAGKAGMAISF 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 D + + I + R K+++ E +T + ++ G+ +K Sbjct: 349 IDHEDEAHFRLIEKRSNIRLKREQI-EGFELTTEAPKREKGKEPIKGKGKSKKDRAREAA 407 Query: 614 S 614 + Sbjct: 408 A 408 >UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C0Y3_THAPS Length = 501 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 111/354 (31%), Gaps = 26/354 (7%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL--EEQRLTQRTQFDLEMMNELGY 302 P H++ + + + LA E + E ++L Q + + G Sbjct: 144 PLCHHILSFPQSILDTVAEEGPLALVMAPTRELALQIDIEIRKLLSSQQNVVSLAVVGGQ 203 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + P + D + L++ S++ + + M A + + Sbjct: 204 SITEQATKLRNGVHVVVGTPGRINDCVEMAYLVLNQCSYIVLDEADRMIDLGFAPQIEQI 263 Query: 363 EYGFRLPSALDNRPLKFEEFEA----------LAPQTIYVSATPGNYELEKSGGDVVDQV 412 +N +E+ T SAT + + + V Sbjct: 264 LDAMGGKLKSENETEAYEQERKDLEILGKAVPSHRLTAMFSATMPSEVERIAKRYLRHPV 323 Query: 413 VRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + G D + + Q + L +I +R+ +E+++V K+ A+ + Sbjct: 324 IVQIGDQDSGKNARITQRVLYLSSSKQKESTLRDILRRSRSDEKIIVFVNEKKHADGVGR 383 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E G R LH +R E + R G VLV ++ GLD+P+V V D Sbjct: 384 MVENAGRRCVVLHGGKTQEQREENLGLFRRGGV-VLVATDVAGRGLDIPDVHQVINFDLP 442 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 RS + IGR R G A + + + Sbjct: 443 ----TRSIDNYCHRIGRTGRAGKEGLATSFITDEDEGIMAQLKTYLESTNSDIP 492 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 95/316 (30%), Gaps = 17/316 (5%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L LVV I I G D L E L K + Sbjct: 118 LKKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDR 177 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + +D ++ + L + Sbjct: 178 TVLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMD 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TK E ++ L G Y+H D+ R +++ R +L Sbjct: 238 LEKDFYG--IIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ G+D+ ++S + S + IGR R G AI Sbjct: 296 IATDVAARGIDVTDLSHIVN-----FSLPEQFESYVHRIGRTGRAGKTGTAITLITPKER 350 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA-LGQNIAKTKAKGRGKSRPIV 618 S I + + +++K + + K ++ N + + + Sbjct: 351 SKMSFIEKKTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQL 410 Query: 619 EPDNVPMDMSPKALQQ 634 DN P+D+ L + Sbjct: 411 LEDNSPVDIITALLSK 426 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 40/303 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ L + D ++ + M + Sbjct: 158 TPGRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEIN-----------------AIL 200 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVD 433 + QT+ SAT + E S + + ++ ++ + + Sbjct: 201 KQLPAKRQTLLFSATFSSAIFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTE 260 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L I + A ++VLV + K+ A+ + + + G + H D+ R +++ D + Sbjct: 261 LLCHLINKSAW--QQVLVFSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFK 318 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ LV ++ GLD+ E+ +V + + IGR R GKAI Sbjct: 319 QGKIKALVATDVAARGLDIVELKVVVNYEIP-----FVAEDYVHRIGRTGRAGNTGKAIT 373 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + + + +R QQ +G + + + + +K + R Sbjct: 374 LYSEDDALLLEEVESVIDKRLPQQWL--------EGFEPDLTKLEPVTRKNSKAAQRQRA 425 Query: 613 KSR 615 K R Sbjct: 426 KKR 428 >UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter oxydans RepID=Q5FNK0_GLUOX Length = 393 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 88/257 (34%), Gaps = 26/257 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 L D + L++ +++ + + + D + T + F Sbjct: 147 THGRLLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQP---------- 196 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLL 436 PQT++ SAT ++ + + V I + + D Sbjct: 197 ------PQTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPE 250 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + R R +V TK + L + L H RV LH D R + + R G Sbjct: 251 TVARLLKHFEGRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGR 310 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VLV ++ GLD+P+V LV +D + + + IGR AR G A + Sbjct: 311 IPVLVTTDIASRGLDIPDVDLVINMDMP-----ETPEAYVHRIGRTARAGRKGVAFSLIN 365 Query: 556 KITPSMAKAIGETERRR 572 + + + + R Sbjct: 366 IDERTFLRDVEKHIGYR 382 >UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=C7YLS4_NECH7 Length = 621 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 17/263 (6%) Query: 329 LPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE---EFE 383 L ++V + Q R R + E L + K E + Sbjct: 257 LGKGCDVLVGTPGRLVDFIQRPKYLTLRRLRYMVIDEADELLDLDWNEDIDKILSGGEQD 316 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDL 435 + SAT + + + VR T + I+ + D L Sbjct: 317 EGNVKFSLFSATFPKSARDLAKNYLAASHVRFRVGRAGSTTANIKQIVLPAEPHEKRDIL 376 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + R ++ +++ A++L ++L V +HSD ER +R R G Sbjct: 377 LGLLEEMH--GVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQEREAAMRSFRSG 434 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +L+ + G+D+ V V D IGR R G A + Sbjct: 435 NAPILIATGVSARGIDVRNVVHVINYDLPSMD-HGGIEEYTHRIGRTGRIGHRGIATSFF 493 Query: 555 DKITPSMAKAIGETERRREKQQK 577 + M + T ++ Sbjct: 494 TERDEGMGSVLTRTLLETNQEIP 516 >UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD22_CELJU Length = 493 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 106/323 (32%), Gaps = 17/323 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRA-RKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +VV + L E L L LK E A Sbjct: 147 LRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAAR 206 Query: 388 QTIYVSATPGNYELEKSGGDVVD------QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 QT+ SAT L V+ + + ++ + + + L + Sbjct: 207 QTLLFSATLEQKGLRHLIKQVITGEAEEIYIEDSSNQIEQQMVLADDDKHKERLAVALLN 266 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 RA ++ +V TK A L L + R LH DI +R ++ R G+ VLV Sbjct: 267 RAE-YQKAIVFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVLV 325 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+ V LV L+ S + +GR R G+A+ + + Sbjct: 326 ATDVAARGLDIDGVDLVINLEM-----AHSGDEYLHRVGRTGRADQPGRAVSFVSASEWN 380 Query: 561 MAKAIGETERRREKQQKYNEEHGIT--PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + K+I + + + P L K A + + K +G + Sbjct: 381 LTKSIERYLKVSLQTIQIPGLEASYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTTAGGA 440 Query: 619 EPDNVPMDMSPKALQQKIHELEG 641 + + + + + I + Sbjct: 441 KKITEKVKVRERER-KNIGKRRK 462 >UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QF24_SCHMA Length = 794 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 89/589 (15%), Positives = 171/589 (29%), Gaps = 93/589 (15%) Query: 30 DGLAHQTLLGVTGSGKTF-----TIANVIADLQ-RP----TMVLAPNKTLAAQLYGEMKE 79 +L TG+GKT + ++I RP +VLAP + L Q+ + + Sbjct: 44 SSGRDAVVLARTGTGKTLAFSLPLVNSLIKGQGSRPSSPVVLVLAPTRELVTQIATDFES 103 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 V Y+P+ A+ + +VV Sbjct: 104 ISVHGIKVTSVYGGVPYRPQC---------------------------DALRQGTHIVVG 136 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A + L + + + V +D+ ++ +++ D G F Sbjct: 137 APGR-VIDLMEKGVLKLSSVRHVVLDEVDRM------LDMGFSK-DVEISPGDFSN---- 184 Query: 200 IDIFPAESDDIALR--VELFD------EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 +I + + R ELF + + L F++ Sbjct: 185 FNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSL------PL 238 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 I + E + + G + + Sbjct: 239 VNSLIKGQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 298 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D + L + HV + ++ M ++ + Sbjct: 299 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESI--------- 349 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + PQT+ SAT ++ E S + D + + + + + T Sbjct: 350 ---LSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTH 406 Query: 432 VDDL---------LSEIRQR--AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + L LS++ + R +V K+ A++L+ G LH + Sbjct: 407 LALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG-DCHVLHGSV 465 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R +++ R G++ L+ N+ GLD+P V LV R I G Sbjct: 466 PQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPP-----RDIEDYIHRSG 520 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 R R G +I + SM I ++ + IT Sbjct: 521 RTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTAW 569 >UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Kluyveromyces lactis RepID=PRP28_KLULA Length = 539 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 105/286 (36%), Gaps = 28/286 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + L + + + + + M + T + S Sbjct: 273 TPGRLLDCLDSHLLFLKQVNTLVLDEADKMIDFGFEDQLTTILAKTETIS---------- 322 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV---DDLLS 437 QT+ +AT + + G + G + +++ + V ++ L Sbjct: 323 -----NRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLK 377 Query: 438 EIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + N + +++ KR A+ L + L E R LH +R + LR G Sbjct: 378 ILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNG 437 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + D+L+ ++ G+D+P VSLV L F +S S + +GR R G A+ + Sbjct: 438 KVDILIATDVAGRGIDIPNVSLVVNLQ-----FPKSFDSFVHRVGRTGRAGKTGTALTFL 492 Query: 555 DKITPS--MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + MAK ++ + Y + ++ ++K + Sbjct: 493 TEEEDHSAMAKLFDYVKKNDFTGENYISKEAMSKYNVDKSSYKPII 538 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 116/370 (31%), Gaps = 21/370 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + +N+ G R L+ G G P T + L ++V + Sbjct: 78 ILAPTRELVMQINQAVSELGKYTDLRHLALYG-GLGPKTQIETLRNGVDIIVATPGRFMD 136 Query: 346 QIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + ++ E + + E Q + SAT G S Sbjct: 137 LYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNLLFSATFGGRVERLS 196 Query: 405 GGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEI--RQRAAINERVLVTTLTKRM 458 + + D + +V A ++ + R +RV++ TK Sbjct: 197 SEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLDYLMRQEDFQRVIIFARTKGT 256 Query: 459 AEDLTEYLEEHGE---RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 A+++ ++L ++R +H++ R+ + + G VLV ++ G+D+ EV Sbjct: 257 ADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVLVSTDVAARGIDVAEV 316 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 S V D + IGR R G+AI + K + I + Sbjct: 317 SHVINFDLPL-----IYEDYVHRIGRTGRANRTGEAITFLTKAEEYHVQKIERIIKATIP 371 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 +Q G+ + + + + K + + + Sbjct: 372 RQPLPA--GVVVAETPFEEEQAMLREIDEQRRKEDPTFLGAF--HEKKITNMAPGRERDK 427 Query: 635 KIHELEGLMM 644 +L G Sbjct: 428 AQAKLSGAKK 437 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 95/327 (29%), Gaps = 38/327 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M R V Sbjct: 135 TPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVL----------------- 177 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD------ 434 + Q + SAT + + + D + + E+ + D Sbjct: 178 KLLPAERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRE 237 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL+ + + ++VLV T TK A L E L + G +H + R + + + Sbjct: 238 LLTHLVESRQW-QQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKD 296 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G VLV ++ G+D+ E+ V + + IGR R + G+A+ Sbjct: 297 GSLRVLVATDIAARGIDISELPQVVNYELP-----NVPEDYVHRIGRTGRAGSPGEAVSL 351 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHG--------ITPQGLNKKVVDILALGQNIAK 605 + I R Q + P + D + Sbjct: 352 VCVDELKLLADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQR 411 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKAL 632 K K K + +PMD Sbjct: 412 NKKKPHNKPARRADAPTLPMDAPEHDS 438 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 97/296 (32%), Gaps = 32/296 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + ++ L + + + + + + M + + Sbjct: 156 TPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLA---------------- 199 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEI 439 QT+ SAT E + + + V + + R + + + + Sbjct: 200 -KLPKTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQRVITVNRNRKTALL 258 Query: 440 RQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 Q N+ +VL+ K L + LE G HSD R ++ + + GE Sbjct: 259 AQLIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEI 318 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VL+ ++ G+D+ ++ +V + RS + IGR+ R G A+ Sbjct: 319 SVLIATDIAARGIDIEKLPIVINFELP-----RSPVDYMHRIGRSGRAGEAGLAMSLISH 373 Query: 557 ITPSMAKAIGETERRREKQQKYN------EEHGITPQGLNKKVVDILALGQNIAKT 606 K I + + R ++++ E P K + G+ Sbjct: 374 DEYQHFKLIEKKNKLRLEREQIPGFEADLEAPEDCPSREVKPMAKPAGTGKKHRNK 429 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 105/356 (29%), Gaps = 21/356 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNR 375 G+ + L +VV + + R R L E L + Sbjct: 105 YGGQDFRSQVKALEELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDE 164 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPVA--- 429 K + QT+ SAT + + D + G+ P + Sbjct: 165 AEKILKKLPERRQTLLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPE 224 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q + L+ + E +V T+ +L + L E G LH D+ +R + Sbjct: 225 KQKFEALTRLLD-QEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTL 283 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + GE +LV ++ GLD+ V+ V D R S + IGR R N G Sbjct: 284 DKFKAGEVSILVATDVAARGLDIQGVTHVYNFDIP-----RDPDSYVHRIGRTGRAGNAG 338 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 A + + +AI E+ + P G +I A+ + I Sbjct: 339 TATTFVTPKDKTALEAI-------EQAIDHQITSKPAPGGAESTEKNIEAVIEKIRGEIE 391 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + L + L + L D+ + Sbjct: 392 IRDLSFYRDYAESLLNSGDPATILAAALRILSKAEEKPQIRLTEIPEPVAPDRKAE 447 >UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 n=3 Tax=Embryophyta RepID=RH44_ARATH Length = 622 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 93/256 (36%), Gaps = 10/256 (3%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L +++ +++ + + M D + + V + + + Sbjct: 343 TPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVLDVMPCSNLKPEKEDEEL 402 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL---LS 437 E + + T SAT + + + VV G I + + T+ D L Sbjct: 403 EEKKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIGETTKFITQQVIMTKESDKFSRLK 462 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG-ERVRYLHSDIDTVERMEIIRDLRLGE 496 ++ ++ +V T+ + + + LE+ G RV LH+ +R + + + Sbjct: 463 KLIDDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAGKSQEQRDYSLEEFKKKR 522 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 F+VLV ++L GLD+ +++ V D + IGR R G A + Sbjct: 523 FNVLVTTDVLGRGLDILDLAQVINYDMP-----NTMDLYTHRIGRTGRAGKTGVATTFLT 577 Query: 556 KITPSMAKAIGETERR 571 + + + Sbjct: 578 LEDKDVFYGLKQKLNE 593 >UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary for prespliceosome formation n=1 Tax=Pichia pastoris GS115 RepID=C4R557_PICPG Length = 784 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 104/318 (32%), Gaps = 21/318 (6%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E+ + LT + L++ E N + + G + D + Sbjct: 284 ESGEGPIGVILTPTRELALQIFKECKPFMKSLN-LKGICVYGGASISQQISD-IKKRVHF 341 Query: 336 VVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 V I G + R L E + + +K QT+ Sbjct: 342 AVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRPDRQTLV 401 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + + G + + V + LL + + Sbjct: 402 FSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLELLGTFKS 461 Query: 445 IN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + +VLV + A+ L L + G + LH + ++R II+D + G D+LV Sbjct: 462 KDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGNSDILVA 521 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ ++LV D+ + +GR R G+A+ + Sbjct: 522 TSVAARGLDVKRLNLVINYDSPNH-----MEDYVHRVGRTGRAGSTGEAVTFLTAKDYRA 576 Query: 562 AKAIGETERRREKQQKYN 579 A + + ++ N Sbjct: 577 AYDVSRALKVSKQLVPDN 594 >UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Trichomonas vaginalis RepID=A2DH37_TRIVA Length = 541 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 23/263 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + + + M + V G+ +P A D Sbjct: 248 TPGRLIDILKQHCITLSEVRFLILDEADRMLDMGFEPQMQEVINGWDMPPADDR------ 301 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPI--IEVRPVATQVDDLLS 437 QT+ SAT + + + G+ D IE R + D S Sbjct: 302 -------QTMLFSATFPDAVRNLARDFMRPKYCRISVGMQDAPKSIEQRFIYCSEMDKFS 354 Query: 438 EIRQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 E+ + LV K + + +L + V +H + +R+ +R G Sbjct: 355 ELLGVIKEVDGPTLVFAERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGR 414 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +++V ++ GLD+ V+ V LD + + IGR R +G A + + Sbjct: 415 ANIMVATDVASRGLDISNVAHVINLDLPTD-----LDTYTHRIGRTGRAGKHGLATSFFN 469 Query: 556 KITPSMAKAIGETERRREKQQKY 578 + + + + R + Sbjct: 470 ESNNAFLAQLIQHLRSKNLPIPE 492 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 114/345 (33%), Gaps = 16/345 (4%) Query: 332 DGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 D +VV R L E L + + Q++ Sbjct: 122 DPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSL 181 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE------IRQRAA 444 SAT + + + D + D E+ +VD + + + Sbjct: 182 LFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF-- 239 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E +V T++ +++ L+E G LH D++ +R E++ +VLV + Sbjct: 240 TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + GLD+ ++S V + + + IGR AR +G A+ + A+ Sbjct: 300 VAARGLDVEDLSAVVNYELPTD-----TETYRHRIGRTARAGKHGLALSLVAPRETARAQ 354 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 A+ + + K + Q + + G K +A G E Sbjct: 355 ALEAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRA-GDILGALTGEAGLS 413 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + A+ + Q A+ L A +I+ + ++ +L Sbjct: 414 GAAIGKIAIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRVSKL 458 >UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=7 Tax=Fungi/Metazoa group RepID=C4QME8_SCHMA Length = 1544 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 102/315 (32%), Gaps = 18/315 (5%) Query: 329 LPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V I + G + R L E + + ++ E Sbjct: 970 LKRGAEIIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCR 1029 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPV---ATQVDDLLSE 438 QT+ SAT + + + G + +E + + E Sbjct: 1030 PDRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLE 1089 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + VLV + A++L L ++G LH ID +R +I D + G Sbjct: 1090 LLGIYQEEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIR 1149 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 +L+ ++ GLD+ ++ LV D + GR R K Y +T Sbjct: 1150 LLIATSVAARGLDVTDLLLVINYDCPNH-----YEDYVHRCGRTGRAGR-KGFAY-TFLT 1202 Query: 559 PSMAKAIGETERR-REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 P ++ G+ R ++ QK EE ++ + + KG Sbjct: 1203 PDQERSAGDVVRAFKQSGQKPPEELMNMWNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVE 1262 Query: 618 VEPDNVPMDMSPKAL 632 + ++ + AL Sbjct: 1263 AQLNSEKRRLQKAAL 1277 >UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminococcaceae RepID=C7H231_9FIRM Length = 395 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 93/336 (27%), Gaps = 16/336 (4%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + + +A + + + + Q E + EL Sbjct: 34 VMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPEKKYPQAVIMAPTRELAQQIAEELTELT 93 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKET 360 Y ++ G L +VV + + Sbjct: 94 YFMPE----VQVACVYGGANMEKQARRLAEGCQIVVATPGRLMDHYKHHSIDLAHVTQVV 149 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L E L E SAT ++ + + Sbjct: 150 LDEADEMLNMGFYKDVRHIIELMKARKSLSMFSATISREVMDIGWLYQNNAEEITVQPRE 209 Query: 421 ---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 P I + T + LS++ Q +RV+V TK L L G V Sbjct: 210 ESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRVMVFCDTKFNTATLANQLARLGFSVDC 269 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH D+ ER +I+++ R G +LV ++ G+D+ +V V D + Sbjct: 270 LHGDLSQKERNQIMQNFRDGRLAILVATDVAARGIDVSDVDAVINYDVPGDN-----EHY 324 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 IGR R G + L+ + + R Sbjct: 325 THRIGRTGRAKKEGVSYLFYVPEEKKRVQELLRLTR 360 >UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=1 Tax=Ciona intestinalis RepID=UPI000180B7AC Length = 672 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 71/412 (17%), Positives = 138/412 (33%), Gaps = 50/412 (12%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLL---EEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + A+ +++ + R K K+L + L + + D + +++ I + Sbjct: 141 TLSFAIPLVEKLIMNRCKDYGRPPKVLVMAPTRELAIQVRKDFQDISQGLSSVCIYGGTP 200 Query: 312 FLSGRGPGE--------PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + P + D++ L + HV + ++ M A K + Sbjct: 201 YFQQERSMRGGVDIVVGTPGRIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEI- 259 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-------DQVVRPT 416 + E PQT+ SAT + S + D + + Sbjct: 260 -----------LGYAYTEEREGPPQTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSL 308 Query: 417 GLLDPIIEVRPVATQVDDLLSEI----RQRAAINERVLVTTLTKRMAEDLT--EYLEEHG 470 +E + Q D I + + + R ++ T TK+ A +L E L++ Sbjct: 309 VRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQ- 367 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + + LH DI+ +R ++ R G LV N+ GLD+PE+ LV + Sbjct: 368 -KAQVLHGDIEQRQREITLKAYRDGTVRCLVATNVAARGLDIPEIDLVIQTSPPSD---- 422 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 S I GR R G + + M K + R K+ P+ + Sbjct: 423 -IDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKV-----ERVAGIKFKMVGPPQPKDI 476 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 K V+ ++ K + + + + +AL + + G Sbjct: 477 VKASVNDAIASLDLVDKKITAEFM-KHAEQVASNHAGGAMEALASALAYMAG 527 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 46/400 (11%), Positives = 112/400 (28%), Gaps = 36/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V+ + ++ A + + Q + + G Sbjct: 497 PMDRLVSGDAGYGKTEVALRAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNV 556 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L + + L + V+ +H + + + + Sbjct: 557 D------ILDRYRTPKERQKILRELKNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLF 610 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 G L L + +SATP L + + + + T + Sbjct: 611 GVMQKEHLKKL--------RLEVNVLTMSATPIPRTLYMALSGLRELSMIATPPIGRTMP 662 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 E + + + + +V+ L + V H + Sbjct: 663 ETYVGPVNDRLIRTAVLREINRGGQVIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQMP 722 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + D G+ +L+ ++ G+D+P + + + D+ + G + L Q GR Sbjct: 723 KRLFEKNVGDFYSGKLQMLLCTTIIESGVDIPNANTLIVDDSQRYGLAQ----LYQLRGR 778 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + K + + R K + G G+ + D+ G Sbjct: 779 VGRSTRR---AFAYFLYNP--KRLTPKAKERLKALREFSGPG---SGMKLAIKDMEIRGF 830 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 K + ++ + + + +++ + E G Sbjct: 831 GELLGKEQHGN-------ISSIGLYLYKEMVERAVAEARG 863 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 99/303 (32%), Gaps = 35/303 (11%) Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 + P + + N + + F E ++ F+S++ E S D F +D V Sbjct: 9 TKDPFLWVIENLERIPE--SSVIIFPSERELQRFLSFHSPSGDEGIFFSHDVFPFEDVRV 66 Query: 116 NEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILR 174 + ++ R+S + + + S+ AI P+ + + Sbjct: 67 SAYVRNHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFGFH--PD 124 Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 +L E+ Y R + G F +GEV+DIF S + R+ LFD+ VE + LFDP + Sbjct: 125 KLVEMGYERVFTVVEPGQFSWKGEVVDIFVPGSV-LPYRLILFDDIVEEIKLFDPGNQRS 183 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 V I I+P +T E + A I + Sbjct: 184 VKHISEIEIFPAGEVLTIEENVSLAKLRI----------------------------ENA 215 Query: 295 EMMNELGYCSGIENYSRF-LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + N+ R L DYL D + + + R Sbjct: 216 EKATGKRFSISPLNWQRMDTVVGLFYRQQAWLGDYLGDDCFFLFVDPEEGLKDFELRERE 275 Query: 354 DRA 356 Sbjct: 276 TLE 278 >UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=Eukaryota RepID=RH24_ORYSJ Length = 770 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 107/366 (29%), Gaps = 36/366 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P ++ + + + I E + + ++L + Sbjct: 271 AAFVLPMIVHIMDQPELEKEEGPI----GVVCAPTRELAHQIYLEAKKFAKPYNLRVAAV 326 Query: 300 LGYCSGIENYSRFLS-GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G S + + + P L D L L + +++ + + M+ + Sbjct: 327 YGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQ 386 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 + QT+ SAT + + D + G Sbjct: 387 IRSIVG-----------------QIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQ 429 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + ++ V P + L E + VLV K +++ L + G Sbjct: 430 VGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQRGF 489 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R+ LH D D RME ++ + G + VLV ++ GLD+ + V D + Sbjct: 490 RIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVNFDI-----AKE 544 Query: 532 ERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 I IGR R +G A + A + + G Sbjct: 545 MDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMKDGR 604 Query: 590 NKKVVD 595 + D Sbjct: 605 FRANRD 610 >UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EG81_SCLS1 Length = 638 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 87/285 (30%), Gaps = 28/285 (9%) Query: 315 GRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D + L + ++ I + M + + G Sbjct: 296 CDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSSWEEELRQIMSGGDQEEGNI 355 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGL-------LDPIIEV 425 N SAT + + + D V G + I Sbjct: 356 NYM--------------MFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHSNIKQDIIY 401 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 A++ L + R ++ TKR A+++ +YL + +HSD ER Sbjct: 402 VEAASKRKALYDLLLSI--PPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQRER 459 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 + IR R G +L+ + GLD+ + V D + IGR R Sbjct: 460 EDSIRAFRNGRMPILIATGVSARGLDVHNIMHVINFDLPSQA-HGGIEEYTHRIGRTGRI 518 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 G A + + +A+A+ +T + P+G Sbjct: 519 GNRGLASSFYNDRNEDIAEALVKTLLETRQAVPDF-LESYLPEGF 562 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 55/374 (14%), Positives = 93/374 (24%), Gaps = 25/374 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + ++ L + L++ + L GE Sbjct: 281 MMDILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLI--GGESMNDQR 338 Query: 327 DYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L +++ I R + E L + Sbjct: 339 DVLSKGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPH 398 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-------VATQVDDLLSE 438 QT++ SAT + + + + + L Sbjct: 399 NRQTLFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHL 458 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +RQ N L+ KR + LT+ L +HG LH D+ R + + G Sbjct: 459 LRQEKVQN--ALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQ 516 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ G+D+ +S V D + IGR R G A Sbjct: 517 LLVCSDVAARGIDIGGLSHVFNFDVPIH-----AEDYVHRIGRTGRAGREGAAFTLASPD 571 Query: 558 TPSMAKAIGETERRREKQQKYN-------EEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 AI + + + E +G K Sbjct: 572 DKFAVDAIEKLINAPIPRIEIEGLERAEWSEEPNRGRGRRHKNGKGGKGNNRYGSRGQDN 631 Query: 611 RGKSRPIVEPDNVP 624 K R E D Sbjct: 632 ARKDRAFTEADAKS 645 >UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum RepID=C7DZC6_ACYPI Length = 354 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 28/275 (10%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + P L +++ + + ++ M D Sbjct: 50 FVCYGGTLVSHQKNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDL 109 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV--- 412 + F +PS +D QTI +SAT + + + Sbjct: 110 KPDIDKILDHFSMPSVMDR-------------QTIMLSATLPDATQHLAKFYLNKNYLFL 156 Query: 413 ---VRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 + + D V D+L+ I ++ ++ +V K A+ L YL E Sbjct: 157 AVGIISSASKDIKQNFCLVNRFNKRDILTSILKKDSVG--TIVFVNQKWTADFLATYLCE 214 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 +H D +R + D R + +VLV + GLD+ V+ V D Sbjct: 215 KHIPSTSIHGDRLQDQREIALDDFRTRKMNVLVATTVAARGLDIKCVNHVLNYDMPL--- 271 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 +Q IGR R G A D + Sbjct: 272 --VIEEYVQRIGRTGRLGNKGIATSLFDPDEDYLL 304 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 142/421 (33%), Gaps = 38/421 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P H V + + + +++++ + ++ Sbjct: 52 AAYLLPALHRVLSERKPKAGIRVL-----VMVPTRELAQQVMKDCEALTQQTGLKTVIIR 106 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + P + ++L + ++D + + + M Sbjct: 107 GGQEFQYQASLLRRNPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRM--------- 157 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRP 415 L + L QT+ +SAT + + D+++ ++P Sbjct: 158 --------LDMGFRDEVLAIAGQIRNDHQTLLLSATLKHRGVSSVAKDILNDAEFIQIKP 209 Query: 416 TGLLDPIIEVRPVAT---QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 L + I + R + L+ + ++ +V T T+ AE+L L H +R Sbjct: 210 EMLQENIRQQRIFSDGPAHKTKLVDWLLSHETF-QKAIVFTKTRVQAEELANNLRLHQKR 268 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V LH +I+ ER I+ R G DV+V +L GLD+ V LV D +S Sbjct: 269 VATLHGEIEQDERNRIMTRFRDGVVDVIVATDLAARGLDVEGVDLVVNFDI-----AQSG 323 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN- 590 + +GR R +G A+ ++ +I R + ++ + Sbjct: 324 DEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIERYLGIRFEPREIDSLKAKYKGPAKV 383 Query: 591 KKVVDILALGQNIAKTKAKGRGKSR-PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 K + + A T + S+ + N+ +P A Q I + ++ +N Sbjct: 384 KSSGKAVGHKKKKADTTTSRKKASKVRKRQTKNIGKRRAPAATSQPIEDGGFKPLKKKKN 443 Query: 650 L 650 L Sbjct: 444 L 444 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 77/263 (29%), Gaps = 32/263 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ L + V + + M + Sbjct: 127 TPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLI----------------- 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 Q + SAT + + + + +D + + + Sbjct: 170 SQTDANRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQ 229 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ I +V + A L+ L G + +H D+ R +I+RD Sbjct: 230 RLIKMI--EDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFA 287 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 + +LV ++ G+D+ ++ V D R I IGR R +G A+ Sbjct: 288 KAKTQILVATDIAARGIDIEGITHVYNYDVP-----RDVDYYIHRIGRTGRAGNSGIAVT 342 Query: 553 YGDKITPSMAKAIGETERRREKQ 575 + + + I + + Sbjct: 343 FATPQDEAWLRRIERAIQATLTK 365 >UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RVR9_TRIAD Length = 633 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 35/289 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L++ HV + ++ M + L Sbjct: 181 TPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEI--------------LSHA 226 Query: 381 EFEALAPQTIYVSATPGNYELE------KSGGDVVDQVVRPTGLLDPIIEVR----PVAT 430 + PQT+ SAT + L+ KS +VD + + +E + P Sbjct: 227 YVKDRHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHE 286 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT--EYLEEHGERVRYLHSDIDTVERMEI 488 + + ++ + R ++ + TK+ A +L L++ V+ LH DI +R Sbjct: 287 RAATIGDLVKVYGGDHARTIIFSPTKKEANELALSSVLKQ---EVQVLHGDIQQAQREVT 343 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 ++ R G F LV ++ GLD+PEV LV + K+ + I GR R Sbjct: 344 LKGFREGNFPCLVATDVAARGLDIPEVDLVIQCEPPKD-----ADTYIHRSGRTGRANRT 398 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 G I + K+I + + I + Sbjct: 399 GICITFYKPTHQDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAKSL 447 >UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreococcus tauri RepID=Q012E3_OSTTA Length = 1030 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 104/327 (31%), Gaps = 28/327 (8%) Query: 329 LPADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +V I + + R L E + + + Sbjct: 450 LKRGAEIVACTPGRMIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILANLR 509 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + V G +D ++E+RP + +L Sbjct: 510 PDRQTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRVLE 569 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++++ ++ A+ + L + G LH + +R I D + Sbjct: 570 LLGEWCERG-KIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVC 628 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++LV ++ GLD+ ++ LV D + +GR R G A+ + + Sbjct: 629 NILVATSVAARGLDVKDLRLVINYDTPNH-----LEDYVHRVGRTGRAGQKGTAVTFISE 683 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 A + + + ++ P+ + + + D + A G G Sbjct: 684 DEEKFAPDLVKALKDSKQT---------VPRDVQR-LADEFTRKRKEGLVGAAGSGFGGS 733 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLM 643 + D D K + + Sbjct: 734 GFKFDQGEHDALKKQKRDAARAAGLEI 760 >UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0K2_SCHJY Length = 1056 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 93/308 (30%), Gaps = 23/308 (7%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R L E + + ++ Sbjct: 579 LKRGAEIVVCTPGRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIR 638 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 Q + SAT + + + G ++ ++EVR ++ LL Sbjct: 639 PDRQVVLFSATFPRAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLE 698 Query: 438 EI--RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + R LV A+ L L + G +H D +R I D ++G Sbjct: 699 LLGELYNTQPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMG 758 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 FDVL+ ++ GLD+ + LV D + +GR R G A+ + Sbjct: 759 IFDVLIATSVAARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFV 813 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK--KVVDILALGQNIAKTKAKGRG 612 A I + + +Q E K K A G Sbjct: 814 TPDQSRYAVGIAKALK--MSKQPVPLELQNLANEFLKNVKSGKEKAAGSGFGGKGLSRLD 871 Query: 613 KSRPIVEP 620 ++R Sbjct: 872 ETRNAERK 879 >UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Proteobacteria RepID=A4SWL3_POLSQ Length = 500 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 99/369 (26%), Gaps = 31/369 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + + + ++ ++ + Sbjct: 61 VSSQTGSGKTAAFLLPLINQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLV 120 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 R + + +G + P L D + + + D + I + Sbjct: 121 RGMKGIRIATVMGGMPYGKQIQALKGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEAD 180 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L + ++ A QT+ SAT + + Sbjct: 181 RM-----------------LDMGFADDLEAIDKRCAGRNQTLMFSATFAPKIMSLANELT 223 Query: 409 VDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D ++ + + LL I A +++ V V T+ +E Sbjct: 224 TDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEHILADATLDQAV-VFASTQVESEK 282 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + + L +G LH + RM + LR G +LV ++ G+D+P +S V Sbjct: 283 IADTLRANGYEASALHGAMPQAVRMRRLESLRKGHTKILVATDVAARGIDVPRISHVIN- 341 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 G IGR R G AI + + + I ++ Sbjct: 342 ----FGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHRDRAKIRNIERFTQQDIVASVIAG 397 Query: 581 EHGITPQGL 589 Sbjct: 398 LEPQAKPSF 406 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 111/321 (34%), Gaps = 33/321 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + M L + K Sbjct: 133 TPGRLLDLLRQKAISLEKLEYLVLDEADRM-----------------LDLGFIDPIQKIM 175 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDPIIEVRPVATQVD-----D 434 ++ A QT+ +AT + + + T ++R A QVD D Sbjct: 176 DYAADDRQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKAD 235 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +LS + + LV TK+ ++LT+YL + G +H + ER+ ++ + Sbjct: 236 ILSYLITEGKWG-QTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIA 294 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ VLV ++ GLD+ + V D + + IGR R G+A+ Sbjct: 295 GDLHVLVATDVAARGLDIESLPYVVNYDLP-----NQPEAYVHRIGRTGRAGETGEAVSL 349 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I + +++ K + ++ + AK + + + + Sbjct: 350 VAPAEREFLQRIEKLIKQKIKLRPVPRIEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVE 409 Query: 614 SRPIVEPDNVPMDMSPKALQQ 634 S +PD + P + Sbjct: 410 S---YQPDKSKKAIRPSLFNK 427 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/263 (18%), Positives = 85/263 (32%), Gaps = 14/263 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNR 375 G P L +VV + + + R L E L Sbjct: 156 YGGRPYEPQIAALRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPD 215 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVAT 430 + QT+ SAT + + + G + E Sbjct: 216 IERVLRMVPDERQTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRA 275 Query: 431 QVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D + + + +A ++ T TKR A+ + + + E G V +H D+ R + Sbjct: 276 HALDKVELLARVLQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQA 335 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 +R R G+ DVLV ++ G+D+ V+ V E++ + IGR R Sbjct: 336 LRAFRSGKIDVLVATDVAARGIDVEGVTHVVNYQCP-----EDEKTYVHRIGRTGRAGRT 390 Query: 548 GKAILYGDKITPSMAKAIGETER 570 G A+ D + I + Sbjct: 391 GVAVTLVDWDEIPRWQMISDALN 413 >UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XFS8_CAEBR Length = 817 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 98/321 (30%), Gaps = 40/321 (12%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP-PTLFDYLPA 331 E + + Q +E+ G + N S+ G + + Sbjct: 481 PTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKSQIERGATIVVGTVGRIKHFCEE 540 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + + + + M + G+ +NR QT+ Sbjct: 541 GTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYEGMPQKENR------------QTLM 588 Query: 392 VSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRA 443 SAT + E + + D + + E + + D LL + Sbjct: 589 FSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDKKDKLLEMLGVDL 648 Query: 444 AIN----------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 ++ +V + +A+ L L +H + ER E +R R Sbjct: 649 ESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGAREQRERSEALRHFR 708 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VL+ + GLD+ V V D + I IGR R +G+A Sbjct: 709 NGSKPVLIATAVAERGLDIKGVDHVINYDMP-----DNIDDYIHRIGRTGRVGNSGRATS 763 Query: 553 YGD---KITPSMAKAIGETER 570 + + + P + K + + E+ Sbjct: 764 FIEEGCPLVPDLLKVLADAEQ 784 >UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001924143 Length = 597 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 21/290 (7%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + P L D + L + ++ I + M ++ + D Sbjct: 246 YTKVVVSTPGRLIDLCERNLLSLAGIKYLVIDECDRMLDEFGMEEQLRKIIALVTINKND 305 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD--QVVRPTGLLDPIIEVRPVATQ 431 + + + I SAT + ++ P + +I + Sbjct: 306 IHTSLWSATLPASLERIARSATINP-------VYICTGVEMSVPQNITQNVIFMHTYMKH 358 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL +R+ V++ T +K A+ LTE+L V +HSD +ER +++ D Sbjct: 359 K-HLLETLRRTPYPP--VIIFTNSKAKADSLTEFLLAEQFHVAAIHSDKTQLERNQVLSD 415 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R FDVLV +L+ GLD+ V+ V D + I GR R G A Sbjct: 416 FRENLFDVLVATDLMSRGLDIVTVTHVINFDTP-----DTIEDYIHRCGRTGRFGRPGLA 470 Query: 551 ILYGDK--ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + K + E + + N+ + L + D Sbjct: 471 TTFLTLDCKISKELKDLLEASKSDIP-IELNDLKNFGKKILVTDMGDKEE 519 >UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase prp11 n=1 Tax=Schizosaccharomyces pombe RepID=PRP11_SCHPO Length = 1014 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 105/341 (30%), Gaps = 24/341 (7%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP--PTLFD 327 R K E T + C + G P + D Sbjct: 478 RHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIAD 537 Query: 328 YLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +VV I G + R L E + + ++ Sbjct: 538 -LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + V G ++ I+EVRP ++ LL Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLL 656 Query: 437 SEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + R LV + A+ L L + G +H D +R I D + Sbjct: 657 ELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA 716 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G FDVL+ +++ GLD+ + LV D + +GR R G A+ + Sbjct: 717 GVFDVLIATSVVARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTF 771 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 A I + + +Q +E +KV Sbjct: 772 ITPEQEKYAVDIAKALK--MSKQPVPKELQTLASQFLEKVK 810 >UniRef50_C4V744 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V744_NOSCE Length = 490 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 66/417 (15%), Positives = 129/417 (30%), Gaps = 55/417 (13%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 I P ++I E+ ++L NK E L + + ++ Sbjct: 94 KAVIICPVREL---CDQIKSVCLELTKKLFV--------NKKNENCDLYYNPKTANQPIS 142 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + S + + P L L + + + + +Y R+ Sbjct: 143 VMTIRSDKQELVDYSDANIIIATPGRLIFNLEKKFINFDNLDTIVFDEADKLYDSTFKRQ 202 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 ++ D + F + I+ T + ++ ++ V + Sbjct: 203 IDTIKSF----IKKDVQTCMFSATYCKEIRDIFNLITKPDRVYFEADFEIKTNVKQ---- 254 Query: 419 LDPIIEVRPVATQVDDLLSEIR--------QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 E+ P ++D ++ ++ + +E+V++ K + L G Sbjct: 255 -----EIYPNFKKIDKIVEVLKSLTLVGNWRETVESEKVMIFVERKVDCLKVANLLNSKG 309 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LH D ER E I + G +L+ N+ GLD+ EV LV D R Sbjct: 310 YNSVTLHGDKSQYERNEAISKFKSGLSSILIATNVAARGLDIREVKLVINYDLP-----R 364 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + I IGR R G+AI + D S K ++ Sbjct: 365 TIDEYIHRIGRTGRAGEEGRAISFFDWKYNSNIVD---------GLIKIFSDN------- 408 Query: 590 NKKVVD-ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 K++ +L + +K + K+ + +N+ Q I+ Q Sbjct: 409 KKEIPKVLLQRNADASKKEFTSVNKAFKPRKNENIYKYKKTVKNMQYINTSSKSQEQ 465 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 12/258 (4%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + +++ I G+ L E L K F Sbjct: 104 INRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRH 163 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP---VATQVDDLLSEIRQRAA 444 QT+ SAT + + D + + +E + + + Sbjct: 164 QTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLE 223 Query: 445 IN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V TKR + L + L + +H D R+ + + + + VLV Sbjct: 224 NPQIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVA 283 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ G+D+ E++ V D + + IGR AR +G+AI + ++ Sbjct: 284 SDIAARGIDIDELTHVINFDLP-----DQAENYVHRIGRTARAGASGEAITFCSFQEKAL 338 Query: 562 AKAIGETERRREKQQKYN 579 K I + + Sbjct: 339 LKDIQKFINQDIPVVDNP 356 >UniRef50_Q7RNB9 Helicase conserved C-terminal domain, putative n=4 Tax=Plasmodium (Vinckeia) RepID=Q7RNB9_PLAYO Length = 212 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 6/150 (4%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 ++ +L S +++ N+R++V TKR A+ +T+ L G +H D ER + Sbjct: 15 HEKLGNLKSLLQRIFKENDRIIVFVETKRSADFITKALRLEGMPALCIHGDKKQDERRWV 74 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + D + G+ +L+ ++ GLD+ V V D F + IGR R + Sbjct: 75 LNDFKTGKSPILIATDVASRGLDIKNVKFVINYD-----FPNQIEDYVHRIGRTGRAGAH 129 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQK 577 G + + +AK + + R E+ Sbjct: 130 GASFTFLTSDKYRLAKELVKILRESEQPIP 159 >UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48294 Length = 657 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 67/411 (16%), Positives = 119/411 (28%), Gaps = 42/411 (10%) Query: 227 FDPLTG-QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 FD + + + + P + I R + Sbjct: 140 FDVIAQARTGTGKTLSFVLPLVEKWQQFPQKSGRQPIILALAPTR-------ELAKQISE 192 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE-PPPTLFDYLPADGLLVVDESHVTI 344 + L G S S G P + DY+ + L + HV + Sbjct: 193 YFEAIGPHLSTTCIYGGTSYWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVVL 252 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 ++ M A + E PQT+ SAT + + + Sbjct: 253 DEVDRMLDMGFAESVEEILGAA-----------YKTEEAPNNPQTLLFSATVPPWVYQTA 301 Query: 405 GGDVV------DQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTTL 454 + D V R ++ + + I+ ++ R +V Sbjct: 302 VKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFCE 361 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR A +L + + + +H DI +R ++ R G+F LV ++ GLD+PE Sbjct: 362 TKRDANELAMS-SDVKQETQVMHGDIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIPE 420 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V LV + R S I GR R G + + + + + E + Sbjct: 421 VDLVIQCNPP-----RDVDSYIHRSGRTGRAGRNGVCVCFYK---RQEERDLQKVEYK-- 470 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 K+ P + K V + + + KS Sbjct: 471 AGIKFKRVSAPQPSDIIKSSVKDVTDLLGAVQPEMVAMFKSAAEAIIAEKG 521 >UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Tax=Simiiformes RepID=DDX53_HUMAN Length = 631 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 100/290 (34%), Gaps = 14/290 (4%) Query: 329 LPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + +++ Q+ + E L + + K Sbjct: 342 ISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR 401 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIR 440 QT+ SAT + + + + D ++ G L+ + + + L E Sbjct: 402 QTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFV 461 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + N++V++ K +A+DL+ G LH + + ++ + D + G +L Sbjct: 462 ENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKIL 521 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + +++ GLD+ +V+ V D F R+ + +G R G ++ + Sbjct: 522 ITTDIVSRGLDLNDVTHVYNYD-----FPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDS 576 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 MA + + R + + LN++ + + + + Sbjct: 577 KMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQRRKE 626 >UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ6_PETMO Length = 974 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 142/425 (33%), Gaps = 67/425 (15%) Query: 53 IADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKD 112 + + + +++ P+ +++F E V + P D F ++ Sbjct: 13 LKKVNKQKILVLPDGY--------LQDFDDEEEVFIY-------------PDFDIFPFEN 51 Query: 113 ASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 ++ +I+ R+ A+L + +V V+ + S++ P + + VG D Sbjct: 52 LDISPNIKAKRMKTLHALLTKENVTVLTTFSSLIRYTLPKN-EFVSKKIKVGDTFDLDHN 110 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L Y +++ G + RG V D F + +R+EL+DE ++R+S FD + Sbjct: 111 VP--YHLGYNLSEEVTSPGEYSKRGFVRDFFIPIYEQ-PVRIELWDEVIDRISFFDSYSQ 167 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + + I P + + + E +K+ L + Sbjct: 168 RSIENLKEVEIIPGSEIMKFDHNLEFYEERLKKYLNGTN-------------------EE 208 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + +++ GI + T+F YL DG + + I + Sbjct: 209 EFLTLDQFNTLPGI-----------FYKDKNTIFSYLNEDGDIYLINKEEIINSYSEKEK 257 Query: 353 GDRARKETLVEYG--FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +T ++ K + E + ++D Sbjct: 258 ENYEMCDTELKRKIYKMFSGHNLEILNKIKYEEVKLTLEKIYFIKSKKEDKRLEYIPLLD 317 Query: 411 QVVRPTGLL----DPIIEVRPVATQVDDLL---SEIRQRAAINERVLVTTLTKRMAEDLT 463 G L D I + +V+ LL + + N RV V + L+ Sbjct: 318 WEDLNDGDLVVHEDYGIGIYHGVNKVETLLGLREFVTLEYSDNSRVYVPV---GRLDKLS 374 Query: 464 EYLEE 468 +Y+ + Sbjct: 375 KYIGD 379 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 127/405 (31%), Gaps = 39/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P ++ + ++ Q + + M+ G Sbjct: 464 PMDRLLSGDSGFGKTEVAMRAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIK- 522 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ + LF+ + + +V +H + + + + + Sbjct: 523 -----IALVTRHKTQKEKKDLFESIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRF 577 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + +SATP L S + D T + + Sbjct: 578 GVLQKEKFKKLSDG--------VNFLMMSATPIPRTLYMSISGLRDISTISTPPVGRLPI 629 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + D L+ I + + +V+ + +L + L ++ +H Sbjct: 630 QTFIGKYSDKLVRTAILREKSRGGQVIYIHNRVQELNELHKKLRTLIPEIKIAMVHGGTP 689 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ I DL G D+L+ ++ G+D+P V+ + + D ++ G + L Q GR Sbjct: 690 KKEFIKSINDLYDGNIDLLLSTTIIENGIDIPNVNTLILDDPERYGISQ----LYQIKGR 745 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG- 600 R+ + + K K + ++R + K E G GL + D+ G Sbjct: 746 VGRSNRRAFVYFLFK------KEVTPQTKKRLEAIKQYNEPG---SGLKLALRDLEIRGY 796 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +I + KG + + + + L + + E + Sbjct: 797 GDILGIEQKG--------HINAIGYHLYHEMLNKILFEYGIKKEE 833 >UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Agaricomycotina RepID=PRP28_CRYNE Length = 738 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 96/288 (33%), Gaps = 19/288 (6%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA----RKETLVEYGFRLPSALDNRP 376 P L D + L++ +V + + M + F P Sbjct: 448 TPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQ 507 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVA 429 E T SAT + ++ G ++ +E Sbjct: 508 PTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGD 567 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L EI + + ++V K+ A+ + +Y+++ G LHS +R + Sbjct: 568 EKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQEQREAAL 627 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + LR GE VLV +L G+D+P+VSLV + + IGR R G Sbjct: 628 QALRDGEISVLVATDLAGRGIDVPDVSLVINWQM-----SDTIEKYVHRIGRTGRAGKTG 682 Query: 549 KAILYGDKITPSMAKAIG-ETERRREKQQ-KYNEEHGITPQGLNKKVV 594 AI + + + E E+ + + H + +++ Sbjct: 683 VAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTREMK 730 >UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XZX1_BRAFL Length = 655 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 108/317 (34%), Gaps = 37/317 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ + L + + HV + ++ M + + + Sbjct: 219 TPGRIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAA-----------YKK 267 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV------VDQVVRPTGLLDPIIE----VRPVAT 430 + ++ PQT++ SAT N+ E + + VD + +E Sbjct: 268 DDKSQNPQTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQA 327 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT--EYLEEHGERVRYLHSDIDTVERMEI 488 + + I + + R +V TK+ A L L++ + LH DI +R Sbjct: 328 RAPVIADIITMYSGQHGRAMVFCETKKEANQLVLEGVLKQ---EAQVLHGDIPQAQRELT 384 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 ++ R G VLV ++ GLD+PEV LV + + S I GR R Sbjct: 385 LKSFRDGNIQVLVATDVAARGLDIPEVDLVVQCEPPSD-----VDSYIHRSGRTGRAGRT 439 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G + + P+ + + ERR K+ + + P + K + A K Sbjct: 440 GVCVCFYK---PNREQDLRFVERR--AGIKFRQINAPQPDDIVKAAANDSARAIEEVPDK 494 Query: 608 AKGRGKSRPIVEPDNVP 624 + Sbjct: 495 MLTHFQEAAEKLIAEKG 511 >UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N6Q9_9CHLO Length = 574 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 27/265 (10%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDR-------ARKETLVEYGFRLPSALDNRPLKFEE 381 L L++ + + +G A+ L E L + + E Sbjct: 258 LQRGCELIIATPGRMLDMLDMHNKGGNPVTSLASAKVLILDEADRMLDMGFEKDIRQIAE 317 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL----------LDPIIEVRPVAT 430 +T+ +AT + + + D+V G + ++V Sbjct: 318 CMPADRRTMLFTATWPKNVQKIAADLLKPDRVKITVGNGGDKLTANKAVTQTVKVIEARE 377 Query: 431 QVDDLLSEIRQRAAIN----ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + L + + +RV++ TK+ + E+L G + D ER Sbjct: 378 KWTEFLKLMEEYKKDGPRHGQRVMIFCNTKKDVNGIGEHLWNEGYAADTVSGDRTQRERE 437 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 +I R G ++V ++ G+D+ V V D ++ + I IGR R Sbjct: 438 AVIAAFRRGSTTMVVCTDVAARGIDVQGVEAVVNYDFPRD----ACDDYIHRIGRTGRAG 493 Query: 546 VNGKAILYGDKITPSMAKAIGETER 570 G A + AK + Sbjct: 494 AKGVAHTLFTRQDGRFAKELTRILE 518 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 78/259 (30%), Gaps = 16/259 (6%) Query: 329 LPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + E L + Sbjct: 119 LERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVR 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 +T+ SAT + + + + ++ LL I Sbjct: 179 RTMLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLI- 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +R+LV T+ A LT+ L HG V LH R + + + G+ +L Sbjct: 238 -EKQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHIL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ + LV D S + IGR R V+G A+ Sbjct: 297 VATDVAARGLDISNLPLVVNYDIP-----NSPEDYVHRIGRTGRAGVSGIAVSLVSPEER 351 Query: 560 SMAKAIGETERRREKQQKY 578 ++ AI + R + + Sbjct: 352 NLLLAIEDLLRHQIPVEAV 370 >UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHU9_9BACT Length = 412 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 109/290 (37%), Gaps = 14/290 (4%) Query: 335 LVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +++ I I G R L E L + + E Q + S Sbjct: 129 VLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEALPKKRQNLLFS 188 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINER-- 448 AT + + + V IE R + +L ++ Q+ +E+ Sbjct: 189 ATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVD-ANLRRQVLQKLFKDEQWK 247 Query: 449 -VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ +KR A +L L++ G + + H D+ ER+++++ + +F +L+ ++ Sbjct: 248 HTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDFPILIATDIAA 307 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+ ++S V D RS + IGR R G AI + + T K I Sbjct: 308 RGIDISKLSHVINYDLP-----RSPMDYVHRIGRTGRAGQKGVAISFINPATEDHFKTIQ 362 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + ++++ ITP + + I ++ + + KS Sbjct: 363 KQAGIKLEKERIEGFDQITPVEVKQAKGPIKGKRKSKKDKLREKKDKSSS 412 >UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes RepID=B2AUP6_PODAN Length = 604 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 98/309 (31%), Gaps = 26/309 (8%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD-ESHVTIPQIGGM 350 + G S + P L D++ LL + ++ + + M Sbjct: 256 MLRPCVIYGGGPSSEQRAQLQKGCDVLIASPGRLIDFMDDTRLLTLRRVRYMVLDEADEM 315 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + +T++ G L + + + SAT + + + Sbjct: 316 LHDDWKGDFDTIMSGGGELLP-----------IQRGNVRYMLFSATFPKQFRDLAKNHLA 364 Query: 410 DQVVR--------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + VR + ++ + L+ + + R ++ +KR A++ Sbjct: 365 ETHVRLRVGRAGSTHRNIKQVVYETAPFNKKSALIDLL--ESLPPTRTIIFVNSKRTADE 422 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L ++L +H+D ER +R R G +L+ + G+D+ V V Sbjct: 423 LDDFLYNLKFPCTSMHADRTQKEREAALRGFRSGLAPILITTGVTARGIDVRNVMHVINY 482 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + IGR R G A + + +A + T ++ Sbjct: 483 DLPSMDYG-GIEEYTHRIGRTGRIGHRGMASSFFTERDEPIASVLTRTLLETGQEIPDF- 540 Query: 581 EHGITPQGL 589 G P+ + Sbjct: 541 LAGYIPEDV 549 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 99/321 (30%), Gaps = 12/321 (3%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNR 375 G D L VV + + G R D R L E L Sbjct: 109 YGGSSFRPQLDALRRGVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLED 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQV 432 + + QT++ SAT + + V P IE Sbjct: 169 IERIADAMPEGKQTLFFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVF 228 Query: 433 DDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + + + LV TK++ +D+ + L G V LH D+ + R ++ Sbjct: 229 SSRIEVLSRLLDTGKIKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMD 288 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G +LV ++ GLD+ +V V + R + IGR AR GK Sbjct: 289 SFRKGSLRLLVATDIAARGLDVDDVDAVVNFELP-----RDPEDYVHRIGRTARAGRKGK 343 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 AI + + S+ I + + + V DIL + A + Sbjct: 344 AITFVGRRDFSLMSRIERFIGVKLTPEPVLTAVQVDQLRTESLVDDILERLKPDAVLPEE 403 Query: 610 GRGKSRPIVEPDNVPMDMSPK 630 + D+ + Sbjct: 404 LKEVEAAPEAMAAALFDLLRE 424 >UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 Tax=Alteromonadales RepID=Q480Z7_COLP3 Length = 399 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 89/283 (31%), Gaps = 35/283 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + M L Sbjct: 132 TPGRLLDLIETGDINFKALEVFVLDEADTM-----------------LDMGFFKDVQSII 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 + QT+ SAT + + D L++ + + +V Sbjct: 175 SKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVP 234 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + A E+VL+ TK A+ + + LE+ LHS R E +++ + Sbjct: 235 LLFNIL--TKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFK 292 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 VLV ++ G+D+ ++LV + R+ I IGR AR +G AI Sbjct: 293 DSTLRVLVATDVAARGIDVDNITLVINYNLP-----EDPRNYIHRIGRTARAGKSGMAIS 347 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + + + E + E + + D Sbjct: 348 FA---VENDIRQLTNIENSIGQVIPVVTEQPFHKEFSKAPIQD 387 >UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC7_9BACT Length = 1103 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 106/308 (34%), Gaps = 27/308 (8%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 L + G + N R ++++A NK + E + FF V F Y Sbjct: 3 LLSSLWGCSSIWHFYNNRPK-GRVSILVAGNKREYDLIMQEAEFFFSGVRVLGFPEYTQD 61 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYG-LGDPDL 153 ++A V + R S +L ++V + + L D+ Sbjct: 62 -------------PYEEARVLPEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDV 108 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + + VG ++ + LA Y + G + RG+ +++FPA+S+ Sbjct: 109 FASATADIKVGGTYEREELEYILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSE-TPCL 167 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME--EIKEELAARR 271 +E FD+E ER+S D T + + + P + + + + + + +I +++ Sbjct: 168 IEFFDDEAERISYVDIRTRRTLKIEKTVRLLPASEALFDVDDLRKYINDSDILDKVELYG 227 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K + + + E N L + E+Y + D +P Sbjct: 228 KYAGCHWLTPAVHNMENLMDYVSESYNFLFF---TEDYRSIFTDFRVLID-----DKMPE 279 Query: 332 DGLLVVDE 339 + Sbjct: 280 GENFWNNN 287 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 104/307 (33%), Gaps = 30/307 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + +Y+SATP L+ S + D T +D + + V Sbjct: 695 EQRFGVAHKEKIKAMRSNVDVLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKV 754 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERM 486 + ++ + I++ +V + + ++ G V H + + E Sbjct: 755 IKRDVEVKNAIQRELERGGQVFFLHNRVENIQTVAAGVKNMLPGANVSIAHGQMTSSELE 814 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +I+ + G+ DVLV ++ G+D+ + + I DA G + + R Sbjct: 815 KILMEFYSGKTDVLVCTAIIENGIDIANANTIVINDAAHLGLAQIYQL-------KGRVG 867 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAK 605 Y + ++ + ++R K + + G G+ D+ G ++ Sbjct: 868 RSGRRGYCYLVVEQ-FSSLSDVAQKRLKIIQQLSDLG---SGVKIAFYDLQLRGAGDLLG 923 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQI 658 G V ++ + + + +L+G + + + E F A I Sbjct: 924 ADQSGF--------MVKVGYELFIAMIDEAVKDLKG-ITSISADTEIITAIPHFIPADYI 974 Query: 659 RDQLHQL 665 D +L Sbjct: 975 EDTKIRL 981 Score = 45.9 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/215 (13%), Positives = 74/215 (34%), Gaps = 14/215 (6%) Query: 402 EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + S V + ++ ++ + + + + A ++V V T +A Sbjct: 569 QLSAIHDVYNDMESAMPMERLVCGDVGFGKTEVAMRAACKAVAGGKQVAVLVPTTVLARQ 628 Query: 462 ----LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVS 516 E ++ +V Y+ + +I+ DL G+ D+L+G + +L + ++ ++ Sbjct: 629 HYMTFFERFKDLPVKVDYVSRFRTARDTRQILVDLSKGDLDILIGTHKMLSKEIEFQDLG 688 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 L+ I + + G E+ +A R+ L I ++ ++ R Sbjct: 689 LLIIDEEQRFGVAHKEKI------KAMRSNVDVLYLSATPIPRTLQLSLSGI--RDISTI 740 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 P D+ + + G+ Sbjct: 741 DTPPV-DRLPVITKVIKRDVEVKNAIQRELERGGQ 774 >UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota RepID=B7G1B9_PHATR Length = 462 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/347 (16%), Positives = 109/347 (31%), Gaps = 25/347 (7%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL--EEQRLTQRTQFDLEMMNELG 301 P HY+ V LA E + E Q+L R + + G Sbjct: 95 VPLCHYLLNLPSRVLESVADAGPLALVMAPTRELALQIDGEFQKLLSRQRLIRTVGIVGG 154 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 + P + + + +++ ++ + + M A + Sbjct: 155 QQIQQQAQELRRGVHIVVGTPGRINECIDMAYMVLNQCCYIVLDEADRMIDMGFAPQIET 214 Query: 362 VEYGFRLPSALDNRPLKFEEFE--------ALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +N +++ + A T SAT + + + Sbjct: 215 ILDACGGSLKSENEAETYQQEKEDLQKADVARHRLTAMFSATMPPEVERIAKRYLRHPAI 274 Query: 414 RPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 G D I+ + V+ + L +++ R + E+++V K+ AE + Sbjct: 275 VSVGDKDSGKNARIEQRIMFLASVSQKEKVLREQLQDRRFLREKIIVFVNEKKHAEGVGR 334 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E G LH +R E + R G VLV ++ GLD+P+V+ V D Sbjct: 335 MVERSGRACVVLHGGKTQEQREENLETFRRGNV-VLVATDVAGRGLDIPDVAHVINYDLP 393 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 RS + IGR R G A + + + Sbjct: 394 ----TRSIENYTHRIGRTGRAGKEGVATSFITDEDEGIMAPLKAYLE 436 >UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H078_UNCTG Length = 1048 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 57/410 (13%), Positives = 129/410 (31%), Gaps = 38/410 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP V + ++ A + + + Q + ++ Sbjct: 523 YPMERLVCGDVGYGKTEVVVRAAFKAVHESMQTAILVPTTVLAQQHYNTFCDRLSPFPIK 582 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + + + + L + ++ +H + + + Sbjct: 583 VAVLSRFQTKAKQKEITQD------LENGLIDIIIGTHRLLQKDVKFKNLGLLVIDE--- 633 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 + + + + +SATP L S D V T + Sbjct: 634 -----EHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSLSGFRDLSVIETPPFGRLP 688 Query: 424 EVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 ++ ++L+ I + + N +V + E G ++ ++ + Sbjct: 689 IETSISLYDENLIKNIIEAELSRNGQVFYVYNKIETILTKAASIRELVPGIKLGIIYGQM 748 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + EI+ E DVL+ ++ GLD+P V+ + I + + G + L Q G Sbjct: 749 KAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEEVENFGLSQ----LYQLRG 804 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R KA Y K + + +R + + E G G + D+ G Sbjct: 805 RIGR-DRKKAYCYLFY----KDKTLSDEAVKRLEAIR---EFGELGSGFRLALKDLEIRG 856 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 I + G + ++ DM K L+++ +++G ++ + Sbjct: 857 AGGILSSSQHGFVR--------DIGYDMFAKLLEEEGKKVKGDAVESQEK 898 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 51/338 (15%), Positives = 111/338 (32%), Gaps = 22/338 (6%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY-------GEMKEFFPENAVE 87 L G+ GSGK + I++++ + + + E+ F+ + Sbjct: 4 IYLSGIGGSGKAHYLFRRISEMRSS---IGGDINEVSDFRMFAFVKDEELSSFYDDLHSF 60 Query: 88 YFVSYYDYYQPEAYVP---SSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA 144 + +++ E VP SS + + Q R AT + + +V A+ + Sbjct: 61 FNSAFHTPQDCELDVPVVKSSHSAP-DIFILPSDNMQQRTFATDKIKNLKSFIVCATDIS 119 Query: 145 IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFP 204 I D + +++ D ++ L+ Y R + F VRGE+ID++ Sbjct: 120 INSPVL-DSKNNIGINVAQNQKCDFSNLVTSLSSFGYTRTSFVEDKLQFAVRGEIIDVWT 178 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 + + +R+ VE + +FDP + I I P + K Sbjct: 179 VAGE-MPVRILFKYNTVEAIRVFDPESQLSNVFISEIKILPVSFSECNSTIKDYFDINDK 237 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 E L+ + L +++ + + Sbjct: 238 ENTMLYFDYLIGEEAEKSFDKYELIINDPLNAISQYQGYKSFTGF-----QGNVNLFFNS 292 Query: 325 LFDYLPADGLLVVDESHVT-IPQIGGMYRGDRARKETL 361 L D+ D + + ++ + +I ++ +R + Sbjct: 293 LKDFAENDVKIKIYCANDSDRERISDLFYENRWNYKNP 330 >UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IJ90_PLAF7 Length = 917 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 24/258 (9%) Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D L + + + ++ + M L +D + + Sbjct: 667 GRLLDLLNSCKVSLSFIKYLIFDEADEM-------------ISLGLKKQMDEIIFQKDLS 713 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQ-----VVRPTGLLDPIIEVRPVATQVDDLLS 437 QTI+ +AT + E + + + + I E+ + Sbjct: 714 PKDTRQTIFFTATFSDKLKEHIEKYMSTPYVYLNIKQKRETKNRIREIVKYVPAKSKFIE 773 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + + ++ + ++ +L+ G V YLH + + R + + R Sbjct: 774 LLKDIKILKGQAIIFVELRHSINNVFNFLKTKGYNVDYLHGKMSQIRRQSVFENFRKKSV 833 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +L+ ++ GLD P++ LV D E + IGR R G AI Y + Sbjct: 834 QILIATSIAARGLDFPDLELVINYDLPSE-----FEQYMHRIGRTGRIGKGGMAINYFNS 888 Query: 557 ITPSMAKAIGETERRREK 574 ++ + + R+ ++ Sbjct: 889 SNKNIIDKLIDHLRKYDQ 906 >UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LXV4_GIALA Length = 658 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 60/395 (15%), Positives = 125/395 (31%), Gaps = 49/395 (12%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL-EMMNELGYCS 304 + +R LA E + + + DL + G + Sbjct: 245 AKDTILSEDRESSTSFP----LAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGA 300 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + P L D+L L + + + + M + + Y Sbjct: 301 REQKGLLRKGCDIVIATPGRLKDFLERGCLSLKYVQIMVLDEADKMLDMGFEPQIRDLVY 360 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP--- 421 F +P + QT+ SAT G + + ++ G + Sbjct: 361 KFDMPGN----------GSNGSRQTLMFSATFGGGVQNMAKRYLHNEARIHIGQIGTTTT 410 Query: 422 ----------IIEVRPVATQVDDLLSEIRQRAAIN---ERVLVTTLTKRMAEDLTEYLEE 468 ++ V +++ L+ ++ +I L+ TK+ + L Sbjct: 411 TIKQQFEYIAETAMKSVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLLN 470 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G RV +H D++ ER +++ + G+ VLV ++ + G+D+ + V D F Sbjct: 471 AGLRVCEMHGDLEQRERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFD-----F 525 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITP-SMAKAIGETERRREKQQKYNEEHGITP 586 + + I IGR R G A + TP + + + + ++ + G Sbjct: 526 PKDIDAYIHRIGRTGRAGAEGLATSFILLDTPHHILRELKNILTQSKQPVPKFLQDGP-- 583 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 GQ K +++ +R + + Sbjct: 584 ---------PSKYGQGSGKGRSREYESTRKSTQIE 609 >UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) n=2 Tax=Dugesia japonica RepID=A4V6M8_DUGJA Length = 627 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 113/336 (33%), Gaps = 37/336 (11%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P + D + L + +V + ++ M ++ GF + E Sbjct: 176 PGRVRDLINKGHLDLSKIEYVILDEVDRM-----------LDMGFSDIVEEILSYIYPSE 224 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----------PTGLLDPIIEVRPVATQ 431 + PQT+ SAT N+ + ++ ++ + P + Sbjct: 225 TDKKGPQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRER 284 Query: 432 VDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + IR N+ R ++ K+ A++L + LH D+ +R +++ Sbjct: 285 AGTIPDIIRVHGGGNQARCIIFCERKKDADELASH-SAMKSDCHVLHGDVPQEKRELVLK 343 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G++ VLV N+ GLD+P++ LV K+ I GR R G Sbjct: 344 KFREGKYSVLVTTNVAARGLDVPDIDLVIQCHPPKD-----VEDYIHRSGRTGRAGRKGV 398 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 I + + + + + K+ I LN + K+ + Sbjct: 399 CICFYEPKEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEAF--------KSIPE 450 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +S + + KA+ + ++ G + + Sbjct: 451 TVCESFKESAIKLIEQFGAEKAMALALAKISGKVEE 486 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/352 (15%), Positives = 111/352 (31%), Gaps = 16/352 (4%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A L N+ L + + T+ + G + + L+ G Sbjct: 53 ASFAIPILQQLIWNEKLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQ 112 Query: 325 LFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 D L ++ + + + R + E L + ++ Sbjct: 113 KQD-LQQRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYL 171 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIR 440 T SAT ++ + + D + IE D + + Sbjct: 172 PKKRTTALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALL 231 Query: 441 QRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E ++ T+ E++ + L+ H RV LH + ER+ ++ R GE Sbjct: 232 HLLGKETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKR 291 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ G+D+ ++S V +D F + + I +GR AR +GKAI + Sbjct: 292 ILVASDVAARGIDIADISHVINVD-----FPDKKETYIHRLGRTARKDTSGKAISFVTAR 346 Query: 558 TPSMAKAIGETERRREKQQKYNEEH---GITPQGLNKKVVDILALGQNIAKT 606 + + + + E L++ G + K Sbjct: 347 DQEKLMQLEDYLGYSLSMRDASTELLTQDYDLSYLSQSSERKEDKGAALRKD 398 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 98/339 (28%), Gaps = 18/339 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNR 375 G P L +VV + + + D L E L Sbjct: 126 YGGAPMDQQIRALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAED 185 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVA 429 QT SAT + + + P + Sbjct: 186 IEAILAATPTERQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYV 245 Query: 430 TQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q L+ + + L+ T+ ++LTE L G R LH + R Sbjct: 246 VQRQYKLAALGRVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDR 305 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++R R G+ ++LV ++ GLD+ ++ V + + IGR R Sbjct: 306 VMRLFRAGQANLLVATDVAARGLDVEHLTHVVN-----FSLPLGIENYVHRIGRVGRAGR 360 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G AI + +AI +R + + + + L + V I Sbjct: 361 EGVAITVAEPREQGALRAIERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELE 420 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + S + P D++ AL+ G + Sbjct: 421 AFRAMFGSLVG---ELDPTDVALAALKLAHRARGGDIDD 456 >UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q2YZZ9_9BACT Length = 453 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 79/265 (29%), Gaps = 28/265 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ A + H+ + + M + Sbjct: 127 TPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKH--------------- 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-----VRPVATQVDDL 435 QT++ SAT + + + + V PVA ++ Sbjct: 172 --IPARRQTLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQELKAA 229 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + LV T TK A L E+L G + +H + R E + + G Sbjct: 230 LLVALLKRDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAG 289 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYG 554 ++ VLV ++ G+D+ E+ V D I +GR AR G A + Sbjct: 290 KYRVLVATDIAARGIDVTELGHVVNFDVPL-----VPDDYIHRVGRTARAEATGDAFTFV 344 Query: 555 DKITPSMAKAIGETERRREKQQKYN 579 I ++ + Sbjct: 345 SPQEQGDLTRIERVIGKQLPRITVP 369 >UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteobacteria RepID=RHLB_SHEWM Length = 441 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 30/308 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + DY+ + + V + + M+ + D R L Sbjct: 141 TTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIK---------------DIRFLFRR 185 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPVATQVDDLLS 437 +A + + SAT E + + + V+ P I+ +D+ + Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMR 245 Query: 438 EIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + +V + TK E++ +LE G RV L D+ +R+ I+ G Sbjct: 246 LLLSLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEG 305 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + D+LV ++ GL + +VS V D + IGR R G ++ + Sbjct: 306 KLDILVATDVAARGLHISDVSHVYNYDLP-----DDCEDYVHRIGRTGRAGKKGVSVSFA 360 Query: 555 DKITPSMAKAIGETERRREKQQKYNEE----HGITPQGLNKKVVDILALGQNIAKTKAKG 610 + AI E Y+ E P +++K + G+N + Sbjct: 361 CEEYALNLPAIEEYITHSIPVTNYDSEGLLDDIPAPIRVHRKHNNRPQQGRNNSGRPQGR 420 Query: 611 RGKSRPIV 618 G Sbjct: 421 NGNRAGGR 428 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 13/267 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNR 375 G + L +++ I I ++ + L E L Sbjct: 109 YGGVSIDSQIKSLQNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEE 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQ 431 + Q++ SAT Y + + D V G + D + + + Sbjct: 169 LDYIVKMLPKNRQSLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGH 228 Query: 432 VDDLLSEIRQRAAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ S +++ IN + ++ TK+ +++ EYL + G L+ D+ +R ++ Sbjct: 229 LNKKYSALKRIVDINPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVM 288 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R LV ++ GLD+ ++ V + KE I GR R +G Sbjct: 289 NRFRNKNLQFLVATDVAARGLDVHNITHVINYNLPKE-----SDIYIHRSGRTGRAGNSG 343 Query: 549 KAILYGDKITPSMAKAIGETERRREKQ 575 ++ K + + ++ Sbjct: 344 ISVCIIHSKETRNLKEFEKRIGKSFER 370 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 101/339 (29%), Gaps = 28/339 (8%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + E ++L + + G G + S P + ++L L Sbjct: 84 LADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGTPGRVEEHLRKGYL 143 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + + M V + Q + SA Sbjct: 144 NLDNLNTFVLDEADRMLEMGFQDAIDAVLDHA-----------------PVKRQNLLFSA 186 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLS--EIRQRAAINERV 449 T + + D ++ I + +D L +I E Sbjct: 187 TFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPEST 246 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TKR+ +++ + L + V LH D++ +R + + +LV ++ G Sbjct: 247 VIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARG 306 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+ + V + R + IGR R G A+ ++ I E Sbjct: 307 LDIESLDAVVNFE-----LSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEY 361 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + + ++V + G K + Sbjct: 362 MNIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLR 400 >UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 n=1 Tax=Hydra magnipapillata RepID=UPI0001926D68 Length = 552 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 74/437 (16%), Positives = 146/437 (33%), Gaps = 31/437 (7%) Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 ++ ++ E +++ K NN L L + + L S I+ Sbjct: 51 KDFLLHECCEASDQIHDAGKTTPNNNILEAMCMLVKSWDAVYSVSESLAKFSNIQ----- 105 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPS 370 L G + L + +V+ I + + L E L Sbjct: 106 LGLATGGLDSRSQEAILRKNPDVVIATPGRLIDHLHNTPSFNLQTIEILVLDEADRMLEE 165 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV--------RPTGLLDPI 422 ++ + QT+ SAT + + + V + L Sbjct: 166 HFHDQMKEIIRLCPRGRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEF 225 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + +R + + N++ LV TK +A L G + LH ++ Sbjct: 226 VRIRSTREADRLAVVVALCCRSFNQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQ 285 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ++R+E + + E D+LV +L GLD+ V V + +S I +GR Sbjct: 286 LQRLEALEKFKNNEVDILVATDLAARGLDIVGVKTVI-----SFNMPTTIKSYIHRVGRT 340 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETE----RRREKQQKYNEEHGITPQGLNKKVVDIL 597 AR G++I + M K + + + R + E++ + K + +IL Sbjct: 341 ARAGKAGRSITLVGEKERKMLKEVVKNAKIPVKNRILSTEVVEKYKNKLESFEKDIKEIL 400 Query: 598 ALGQNIAKTK------AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 ++ + + K + E + P K +Q + + + +NL Sbjct: 401 KEEESAKQLRVAEMEMNKAKNLIEHHDEIMSRPAKTFIKTQKQSSAKNKKESQKKVKNLT 460 Query: 652 FEEAAQIRDQLHQLREL 668 EE R+Q+ R++ Sbjct: 461 EEEKKIRREQMFHARQI 477 >UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PH0_SOLUE Length = 422 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 105/325 (32%), Gaps = 40/325 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L+D++ + + + + + M L + Sbjct: 129 TPGRLYDFMSRGLINLTTVRMLILDESDRM-----------------LDMGFLPTIKRII 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDD 434 QT+ SAT + + V + V G + E + + Sbjct: 172 AAMPAERQTLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQDRKFG 231 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + + LV TK A+ L + L + G + +H D +R++ ++ + Sbjct: 232 LLEMMLREEQ--GSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQE 289 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G + VLV ++ G+ + +S V D + I +GR R G A + Sbjct: 290 GYYRVLVATDVAARGIHVEGISHVVNFDLP-----QVPEDFIHRVGRTGRAGAKGTASTF 344 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 T S IG ER + K E K+ ++ AK Sbjct: 345 A---TRSERSEIGRIERTLSVKLKRREVSASIVAAPRKESSAVIV------LPHAKRAEH 395 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHE 638 SRP + SPK+ ++ + Sbjct: 396 SRPEQGRNKSFRSFSPKSGRRPVRR 420 >UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=C0NLV0_AJECG Length = 615 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 94/311 (30%), Gaps = 22/311 (7%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD-ESHVTIPQIG 348 + G + + P L D++ +L + + + + Sbjct: 248 RSMLRPCVVYGGGPTREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKYTIVDEAD 307 Query: 349 GMYRGDRARKETLVEYG--------FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 M D + + + G + + + + E + + SAT Sbjct: 308 EMLHSDWETELSKLMSGGGTYTKQARIITECRNFLTMSIDTNEDADHRYMMFSATFNKSC 367 Query: 401 LEKSGGDVV-DQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 E + + D V G + I + L + + R LV Sbjct: 368 RELARKFLAADHVRIRIGRAGSAHLNVSQNIVYAEDHLKKQALYDLLI--SMPPSRTLVF 425 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK A+ + +YL G +HSD ER + +R + + ++V + GLD+ Sbjct: 426 VNTKAQADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSARGLDI 485 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETER 570 V V D I IGR AR G A + + +A + + Sbjct: 486 KNVMHVINFDMPS-ATHGGIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAADLVKILL 544 Query: 571 RREKQQKYNEE 581 ++ E Sbjct: 545 ECKQPLPDFLE 555 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 84/285 (29%), Gaps = 12/285 (4%) Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGF 366 + G L G ++V + I I R L E Sbjct: 141 QKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADE 200 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PII 423 L + + SAT L + + V + P+I Sbjct: 201 MLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLI 260 Query: 424 EVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 E + D + + + + N LV TK A+ + + L+E V LH DI Sbjct: 261 EQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIP 320 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R +I+ R +LV ++ G+D+ ++ V + + +GR Sbjct: 321 QSQREKILERFRTKRARILVATDVAARGIDIEGITHVVNYSIPHD-----SATYTHRVGR 375 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 R G AI + + + + K I Sbjct: 376 TGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKASTVPLVEHIL 420 >UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=Cryptosporidium RepID=Q5CWY8_CRYPV Length = 480 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 98/285 (34%), Gaps = 30/285 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + S + + ++ + A + + +P Sbjct: 214 TPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSNIPKGG-------- 265 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLL 436 Q SAT + + + V G II+ T+ D + Sbjct: 266 -----KVQIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKI 320 Query: 437 SEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +RQ + LV T +K A+ L + L V +HSD+ V+R II+ R Sbjct: 321 ESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFR 380 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ +L+ +L+ G+D VS V D F S + I +GR R G AI Sbjct: 381 TGKIWILICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIHRVGRCGRAGRTGYAIT 435 Query: 553 YGDKITPSMAKAIGETERRREK----QQKYNEEHGITPQGLNKKV 593 + K+I + + + + I KK+ Sbjct: 436 FFTLRDIPKIKSIAKVIKSSGADVPSWMLKVKLNNIKKSHFKKKI 480 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 52/398 (13%), Positives = 110/398 (27%), Gaps = 44/398 (11%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADGLLVVDESHV 342 Q ++ ++ G E S+ + + + + D++ L + + + Sbjct: 97 FQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRAL 156 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M R V Q + SAT + Sbjct: 157 VLDEADEMLRMGFIDDVRYVLSHVSDEC-----------------QRLLFSATIPTDIAD 199 Query: 403 KSGGDVVDQVVR------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + T + + D L + + + V++ TK Sbjct: 200 IIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG-VIIFVKTK 258 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 ++ + L+ G RV ++ D+ +R I+ R + DVLV +++ G+D+ +S Sbjct: 259 TSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARGIDLERIS 318 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 V D + + + IGR R G +I + + ++ Sbjct: 319 HVINYDMPND-----SDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTLERFTGSPMQE 373 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + ++ + I + S + L Sbjct: 374 VFMPSAKDLAQSRIDH----FKTRIASALDKNKSLDNYKEIITSIRDELELDSDELLAVL 429 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 +G F Q RD Q S Sbjct: 430 TLLAQGKKSF------FPREIQARDDRPQRDRNLRGNS 461 >UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Cryptosporidium RepID=A3FQ46_CRYPV Length = 529 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 100/337 (29%), Gaps = 51/337 (15%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P E Q + EL R + + + +++ Sbjct: 222 LILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGGRNIDQ--------------QAF 267 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+E P + D L ++V S+V + + M Sbjct: 268 SLRKGVEIII---------ATPGRMQDCLEKTLTVLVQCSYVILDEADRMIDLGFQDSLN 318 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--- 417 + + + T SAT + + + G Sbjct: 319 FILD---------------QIPPEIQRTTHMFSATMQKELENIAKRYLNSPINVTIGDIG 363 Query: 418 ----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + I+ + L++ + + ++V K+M + + + HG + Sbjct: 364 AGKKSIQQILNFISENKKKSTLINTLNNKELAVPPIIVFLNQKKMVDIVCREIVSHGFKA 423 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH R + + G FD+LV ++ G+D+ ++LV D F +S Sbjct: 424 TSLHGGKMQEVRENSLNLFKSGVFDILVSTDVAGRGIDINNINLVINYD-----FPKSID 478 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 + IGR R NG AI + + + + Sbjct: 479 TYTHRIGRTGRAGKNGIAISFITPEDSGLFPELKKIL 515 >UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=A9BNS0_DELAS Length = 707 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 87/265 (32%), Gaps = 19/265 (7%) Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + LVV + Q + D+ + + E L + + + A QT Sbjct: 252 QNANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQT 311 Query: 390 IYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPV---ATQVDDLLSE 438 + SAT + + + D + P I +V + LL Sbjct: 312 MMFSATFAPRIQQLAMRVMHDGGSGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDH 371 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + IN + +V T+ + L L++ G LH + R + LR G+ Sbjct: 372 WLRDTTIN-QAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQ 430 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ G+D+P ++ V G IGR R G A+ + + Sbjct: 431 VLVATDVAARGIDVPTITHVFNY-----GLPMKAEDYTHRIGRTGRAGREGVAVTFAEFR 485 Query: 558 TPSMAKAIGETERRREKQQKYNEEH 582 I R++ K + Sbjct: 486 DRRRIFDIEAYSRQQFKAEVIPGLE 510 >UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas RepID=C1E681_9CHLO Length = 790 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 93/285 (32%), Gaps = 32/285 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + L + D + + + M L + + Sbjct: 263 TPGRLIDLIQRGSLNLHDIEYCVLDEADQM-----------------LAVGFEEDVERIM 305 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDPIIEVRP-------VATQV 432 E QT SAT ++ + + D V G + + T Sbjct: 306 EEIPEQRQTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSR 365 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 +L+++ + + T TKR A+++T L LH DI +R ++ Sbjct: 366 TTILADLVTVYGKGAKAICFTQTKREADEVTAALGRR-MATEVLHGDIAQAQRERTLKRF 424 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R G F VLV ++ GLD+ +V LV + + S + GR R N G AI Sbjct: 425 RDGRFSVLVATDVAARGLDITDVDLVVHYELPHD-----TESFVHRCGRTGRANKKGAAI 479 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 S ++I + + + + ++I Sbjct: 480 AMYTPREKSRIRSIVRETGVKFRVINPPTAAEVMTSSAEQASIEI 524 >UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aquificaceae RepID=B4U778_HYDS0 Length = 364 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 105/298 (35%), Gaps = 19/298 (6%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTI 344 LT + +++ ++ + + S ++ G D L + +++ Sbjct: 74 LTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQN--LDILQNKNVDILIGTPGRIK 131 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 I + L E+ L F T SAT + Sbjct: 132 DLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMFSATVPSRIELL 191 Query: 404 SGGDVV-DQVVRPTGLLDPIIEVRPVATQVD---DLLSEIRQRAAIN--ERVLVTTLTKR 457 + + D ++ + ++ + + E+ + E++L+ TK+ Sbjct: 192 AKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHIIDTHPMEKMLIFVKTKK 251 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A+DL L + G R + LH D+ +R + + + G +L+ ++ GLD+ +V + Sbjct: 252 DAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSILIATDVAARGLDIKDVGV 311 Query: 518 VAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 V + I IGR R +GKA I P +KA+ ++ R K Sbjct: 312 VINYNIP-----EDPELYIHRIGRTGRIGKSGKAFS---LICPEDSKALWRIKKLRSK 361 >UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L277_PLAKH Length = 906 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 30/263 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + ++ + M L +D + + Sbjct: 655 TPGRLLDLMNSCKVSLSFVKYLIFDEADEM-------------ISLGLKEQMDAILFEKD 701 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVV--------RPTGLLDPIIEVRPVATQV 432 + A QTI +AT + E + V + +++ P + Sbjct: 702 LCASEARQTILFTATFSDSLREDIEKFMGTPYVFLNITQKREVQNSIKQVVKYVPAKCKQ 761 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D+LL +++ + ++ + + L+ +G +V YLH + V R ++ + Sbjct: 762 DELLKDLKPLQ---GQAIIFVELRSSINYIFSALKSNGYQVNYLHGKMSQVRRQDVFQQF 818 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R EF +LV ++ GLD P++ LV D E + IGR R G AI Sbjct: 819 RDREFQILVATSIAARGLDFPDLELVINYDLPAE-----FEQYMHRIGRTGRIGKTGLAI 873 Query: 552 LYGDKITPSMAKAIGETERRREK 574 Y + + + + R+ + Sbjct: 874 NYFNSSNKKIIDKLIDHLRKHNQ 896 >UniRef50_UPI0001AEC3C5 transcription-repair coupling factor n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC3C5 Length = 183 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 10/165 (6%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS I+ ++ + P +++ + A +L E+ F +N P Sbjct: 28 LQGSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNTKH---------TPI 78 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMM 158 P +T S ++ I RL ++ + + + V+ + P YL K + Sbjct: 79 TLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVPVNTLMQRLAPTNYLAKYL 138 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF 203 L L G +D+ R L + Y Q F VRG +ID+F Sbjct: 139 LMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLF 183 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 33/300 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + ++ + + + + + M L K Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRM-----------------LSLGFTEELNKIL 184 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-----TQVDDL 435 QT+ SAT + S + D V + V+ V + L Sbjct: 185 ALLPEKKQTLLFSATFPDKVTTLSQHLLRDPVEVQLQSAEASTLVQRVFSVNKGEKTAVL 244 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 I+Q + L+ K L + L + G H D R ++ + G Sbjct: 245 AHLIKQHQWR--QTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSG 302 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 E VL+ ++ GLD+ ++ +V D RS + IGR+ R G + Sbjct: 303 EIQVLIATDIAARGLDIEKLPVVINFDLP-----RSPADYMHRIGRSGRAGEVGLGLSLI 357 Query: 555 DKITPSMAKAIGETERRREKQQKY--NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 D K I + + + ++++ E + + A K K K Sbjct: 358 DYDDYHHFKVIEKKNKFQLEREQVEGFEVEDDQSEAYFLPM-KPRAKPAGTGKKKKKRNQ 416 >UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyostelium discoideum RepID=DDX46_DICDI Length = 1151 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 93/314 (29%), Gaps = 26/314 (8%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I + R L E + + Sbjct: 629 LKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIR 688 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QTI SAT + + + G ++ +EVRP T+ L+ Sbjct: 689 PDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIE 748 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++L+ T + ++L L + LH D +R E I D + Sbjct: 749 LLSIWYHKG-QILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVK 807 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +L+ L GLD+ +++LV D + +GR R G A + Sbjct: 808 TILIATPLASRGLDIKDLNLVVNFDCP-----DHLEDYVHRVGRTGRAGNRGTAYTFITP 862 Query: 557 ITPSMAKAIGETERRREKQQ-KYNEEHGITPQGLNKKVVDILA-------LGQNIAKTKA 608 + +I + + + + T + K+ D+L G + Sbjct: 863 DEERFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEE 922 Query: 609 KGRGKSRPIVEPDN 622 + R Sbjct: 923 DKKNIERKQQRKAY 936 >UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=Helicobacter RepID=MFD_HELPJ Length = 1001 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 50/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QR 442 + + + +SATP L + + T D + + D+LL EI + Sbjct: 628 SKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRE 687 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 N ++ + LE+ ++ LHS I+ E EI+ + G + VL Sbjct: 688 LRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVL 747 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ G+ +P + + I +A G L Q GR R + + Sbjct: 748 LCTSIVESGIHLPNANTIIIDNAQNFGLA----DLHQLRGRVGRGKKEG---FCYFLIED 800 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K++ E +R + N G G + D+ G + + Sbjct: 801 -QKSLNEQALKRLLALEKNSYLG---SGESIAYHDLEIRGGGNLLGQDQSG-------HI 849 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 N+ + + L+ I+EL G + +++E Sbjct: 850 KNIGYALYTRMLEDAIYELSGGKKRLEKSVE 880 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 3/137 (2%) Query: 129 AMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 A+ +++ +++A +SA+ L+ +T+ + + + +L Y D Sbjct: 77 ALENKQETIIIAPISALLHPLPKKELLE-SFKITLLEKYNLKDLKDKLFYYGYEILDLVE 135 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G RG+++DI+ S A R+ FD E E + DP T + P T Sbjct: 136 VEGEASFRGDIVDIYIPNSK--AYRLSFFDAECESIKELDPATQMSLKEDLLEIEIPPTL 193 Query: 249 YVTPRERIVQAMEEIKE 265 + ++++ Sbjct: 194 FSLDEPSYKDLKTKVEQ 210 >UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=Thermus RepID=Q5SJW3_THET8 Length = 978 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 68/364 (18%), Positives = 119/364 (32%), Gaps = 36/364 (9%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 LS P + + L + +V +H + + D E+ F + Sbjct: 525 LSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRF--RDLGLLIVDEEHRFGVAQKE 582 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 R LK E T+Y+SATP L + + D T +A Sbjct: 583 RIRELKAE------VDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFLAPFD 636 Query: 433 DDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEII 489 L+ E I +V E +LE R +H + E + Sbjct: 637 PLLVREAILFELERGGKVFYVHDRVASIEARRRFLENLVPEARIGVVHGQMPESLIEETM 696 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 G +DVL+ ++ GLD+PE + + I AD+ G +L Q GR R Sbjct: 697 LLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLA----TLYQLRGRVGRREEE- 751 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKA 608 Y P + E +R + G G D+ G N+ + Sbjct: 752 --AYAYLFHPPR---LTEAAEKRLAAIADLSDLG---SGHLLAERDMEIRGVGNLLGPEQ 803 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQLHQL 665 G + +++ + L++ I +L+G + +++ + A R + + L Sbjct: 804 HG--------HIRALSLEVYTELLEEAIRKLKGEAKEERRHVTLDLALSARLPAEYVGSL 855 Query: 666 RELF 669 Sbjct: 856 EARS 859 Score = 48.6 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 55/176 (31%) Query: 49 IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTF 108 A + A P ++L P L + Y ++ F V + +V S + Sbjct: 20 AALLFAQEAPPALLLVPEARL--RRYRDLSAF--GAKVYVNPGLEALEEKALFVLSYE-- 73 Query: 109 IEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID 168 + S DP+ + L L VG Sbjct: 74 --EALSPFPE-------------------------------DPEAWR---LLLEVGRAYP 97 Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERL 224 + A+L RL +L YAR++ +RV GEV+++ +R+E F +E+ERL Sbjct: 98 REALLSRLLKLGYARDE------DYRVLGEVVEL-------GEVRLEFFGDELERL 140 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 11/159 (6%) Query: 381 EFEALAPQTIYVSATPG-NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 E++ L + TP LE+ D+ +D ++ + + L Sbjct: 430 EWDPLVEKGFPYELTPDQKRALEEVLRDLESPH-----PMDRLVSGDVGFGKTEVALRAA 484 Query: 440 RQRAAINERVLVTTLTKRMAED----LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + +V T +AE E + RV L E I++ L G Sbjct: 485 HRVVGHGAQVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEG 544 Query: 496 EFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 D+++G + LL+E + ++ L+ + + + G + ER Sbjct: 545 TVDIVIGTHRLLQEDVRFRDLGLLIVDEEHRFGVAQKER 583 >UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=3 Tax=Magnoliophyta RepID=B9SW84_RICCO Length = 1173 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 109/338 (32%), Gaps = 39/338 (11%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R + E + + + + Sbjct: 647 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 706 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G + ++EVRP + + LL Sbjct: 707 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLRLLE 766 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++L+ ++ + L L +HG LH D +R I D + Sbjct: 767 LLGEWNEKG-KILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 825 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++L+ ++ GLD+ E+ LV D + +GR R G AI + + Sbjct: 826 NLLIATSIAARGLDVKELDLVVNFDVPNH-----YEDYVHRVGRTGRAGRKGCAITFISE 880 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 A + + E+ + K + D + N +A G G Sbjct: 881 EDARYAPDLVKALELSEQVVPED----------LKALADGFMVKVNQGLEQAHGTGYGGS 930 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + +++I + A+ FEE Sbjct: 931 -------GFKFNEEEDEKRIAAKKAQ----AKEYGFEE 957 >UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BS29_GIALA Length = 449 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 33/277 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L + + + + M + + Y F +P N Sbjct: 104 TPGRLKDFLERRCLSLKYVRVMVLDEADKMLDMGFEPQIRDLVYKFDMPGNGPN------ 157 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------------VRP 427 QT+ SAT G + + ++ G + ++ Sbjct: 158 ----GNRQTLMFSATFGTGVQAMAKRYLHNEARIHVGQIGSTTTMIKQQFEYFAETAIKS 213 Query: 428 VATQVDDLLSEIRQRAAIN---ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V ++D L+ ++ +I L+ TK+ + L G RV +H D++ E Sbjct: 214 VDKRIDKLIHILKSPGSIPTASFLTLIFVETKKDIGYIITKLLNAGLRVCEMHGDLEQRE 273 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ + G+ VLV ++ + G+D+ + V D F + + I IGR R Sbjct: 274 RQNNLKSFKDGKTPVLVATDVAQRGIDIGAIRHVINFD-----FPKDIDTYIHRIGRTGR 328 Query: 545 -NVNGKAILYGDKITPS-MAKAIGETERRREKQQKYN 579 G A + TP + + + + ++ Sbjct: 329 AGAEGLATSFILLDTPHYILRDLKNILLQSKQPLPKF 365 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 59/346 (17%), Positives = 98/346 (28%), Gaps = 18/346 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ L + L++ NE + N + + G L Sbjct: 330 QKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLN--VVCCYGGGSKWEQSKALEQ 387 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV I + R L E + + QT+ Sbjct: 388 GAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTL 447 Query: 391 YVSATPGNYELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVA---TQVDDLLSEIRQR 442 SAT + + D V D V + + LL + + Sbjct: 448 LFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLCHLVKF 507 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + VL+ K AE + L LH D+D +R ++I + E D+LV Sbjct: 508 LSEG-SVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDILVA 566 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+P + V D R + IGR R G A Sbjct: 567 TDVAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEF 621 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 A + ++Q + + G+ A T Sbjct: 622 AGHLVRNLEGADQQVPEDLMELAMKSSWFRSSRFKQGKGRKPANTY 667 >UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=Embryophyta RepID=RH24_ARATH Length = 760 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 111/364 (30%), Gaps = 40/364 (10%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P ++ + + + I E + + + L + Sbjct: 280 AAFVLPMIVHIMDQPELQRDEGPI----GVICAPTRELAHQIFLEAKKFSKAYGLRVSAV 335 Query: 300 LGYCSGIENYSRFLS-GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G S E + + P L D L L ++ S++ + + M+ + Sbjct: 336 YGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQ 395 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 + QT+ SAT + + + D + G Sbjct: 396 VRSIVG-----------------QIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGE 438 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + ++ V P + L E VLV K +++ L + Sbjct: 439 VGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSF 498 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +V LH D D RME ++ + G VL+ ++ GLD+ + V D + Sbjct: 499 KVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDI-----AKD 553 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + IGR R + + Y +T A+ GE + + P+ + Sbjct: 554 MDMHVHRIGRTGRAGDRDGVAY-TLVTQREARFAGELVNSLVAAGQ-----NVPPELTDL 607 Query: 592 KVVD 595 + D Sbjct: 608 AMKD 611 >UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=Viridiplantae RepID=RH42_ARATH Length = 1166 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 93/286 (32%), Gaps = 20/286 (6%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R + E + + + + Sbjct: 649 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 708 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G + ++EVRP + + LL Sbjct: 709 PERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 768 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + ++LV ++ + L + + LH D +R I D + Sbjct: 769 LLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVC 827 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++L+ ++ GLD+ E+ LV DA + +GR R G A+ + + Sbjct: 828 NLLIATSVAARGLDVKELELVVNFDAPNH-----YEDYVHRVGRTGRAGRKGCAVTFISE 882 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 A + + +Q ++ G KV + Sbjct: 883 DDAKYAPDLVKALE--LSEQPVPDDLKALADGFMVKVKQGIEQAHG 926 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 83/270 (30%), Gaps = 16/270 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I I A ++ E L + Sbjct: 119 LKDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETK 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIR 440 QT SAT S + G ++ + V + + L I Sbjct: 179 QTFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLI- 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A N+ ++ T+ +++ ++L ++G LH D+ +R +++ RL D+L Sbjct: 238 -DANPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDIL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ ++ V + GR R +G ++ Sbjct: 297 VATDVAARGLDVNSLTHVI-----HFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEES 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGL 589 K I + ++ I + Sbjct: 352 RKLKQIKSATKIEIHERTIPTGDDIIKAQV 381 >UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetaceae RepID=PRP28_YEAST Length = 588 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 96/273 (35%), Gaps = 24/273 (8%) Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++S P L D L L++ + + + M + T + Sbjct: 304 SFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILT--- 360 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPII 423 + A+ QT+ +AT + + G + + TG I Sbjct: 361 --------KVDINADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQ 412 Query: 424 EVRPVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDID 481 +V A +D +++ A + +++ K+ A+ L E ++ +V LH Sbjct: 413 QVVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKS 472 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R ++ R + +++ N+ GLD+P VSLV + I IGR Sbjct: 473 QEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLVVN-----FQISKKMDDYIHRIGR 527 Query: 542 AAR-NVNGKAILYGD-KITPSMAKAIGETERRR 572 R G A+ + S+ + + + R+ Sbjct: 528 TGRAANEGTAVSFVSAAEDESLIRELYKYVRKH 560 >UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3A2_WIGBR Length = 685 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 119/337 (35%), Gaps = 29/337 (8%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L + L +L V + I +I + R ++ ++ L Sbjct: 214 LRFKKWPIKISILSRFLNKKEQNKV-IKMILIGEIDILIGTHRILQKDIIWKDLGLLIID 272 Query: 373 DNRPLKFEEFE-----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVR 426 + + E + ++ATP L + + D + T ++ Sbjct: 273 EEHRFGVSQKECIKTVRTGVDVLSLTATPIPRTLNMAMNGLRDLSIISTPPKYRLPVKTF 332 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVE 484 D + I+ + ++ + ++ L++ +VR HS + Sbjct: 333 IYEYNKDIIKKAIKNELSRKGQIYYLHNNISTINETSKILKKIAPKVRIKISHSKMCKNL 392 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 + ++D + +FD+LV +++ G+D+ + + I A++ G + L Q GR R Sbjct: 393 LKKTMQDFKENKFDMLVCTSIIETGIDIANANTIIIEKANQFGLAQ----LNQLRGRVGR 448 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-I 603 + Y T S + ++ E ++R + G + + D+ G + Sbjct: 449 SFRQ---AYAYLFT-SKSNSLNENSKKRLEAI---SSINKLGSGFSLSINDLEIRGSGEL 501 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 +K G + +++ + + K L++ I ++ Sbjct: 502 LGSKQSG--------KINSIGISLYNKLLKKSIKLIK 530 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 91/279 (32%), Gaps = 12/279 (4%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSA 371 ++ G L +VV T+ I + + L E L Sbjct: 103 VTTVYGGSSMEDQIRSLKRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMG 162 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPV 428 + K E QT+ SAT + + V +G + + Sbjct: 163 FKDELDKVLEATPDTKQTLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYY 222 Query: 429 ATQVDDLLSEIRQRAAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + +++ A +N + ++ T+R +++ + L + G LH D+ +R Sbjct: 223 SVTERTRYPALKRIADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRD 282 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 ++ R +LV ++ GLD+ E++ V + GR R Sbjct: 283 SVMGKFRKKTIQILVATDVAARGLDVTELTHVIN-----HKLPDQIENYTHRSGRTGRAG 337 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G +I+ + + I + +++ + K I Sbjct: 338 NTGISIVLVNGKEKGKLRPIEKIIQKKFTEAKVPSGKDI 376 >UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gammaproteobacteria RepID=Q21EB3_SACD2 Length = 436 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 100/318 (31%), Gaps = 31/318 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L +++ + D + + + M L L Sbjct: 129 TPGRLVEHIKNGNVDFSDLEFLVLDESDRM-----------------LDMGFQENMLAIA 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVAT---QVD 433 Q + SAT + + G + D V I + R A + Sbjct: 172 AVCNEERQNLLFSATLKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKE 231 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ ++ +RV+V T+ + ++ L + Y+H ++ +R +++ Sbjct: 232 KLVVKLIAE-EDAQRVIVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFI 290 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ VLV ++ GLD+ +V LV A G + +GR R+ G AI Sbjct: 291 DGKIRVLVATDVAARGLDIKDVDLVINFSAAFTGDEH-----VHRVGRTGRSDKTGLAIT 345 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + +I + R +K G K A + G+ Sbjct: 346 LISPKEFNPMSSIERYLKIRLIPRKVKGLEGTYNGPKKLKSSGKAAGPKKKKTKTTAGKP 405 Query: 613 KSRPIVEPDNVPMDMSPK 630 + + D +PK Sbjct: 406 GKKLPSKKDPQKKRSAPK 423 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 65/363 (17%), Positives = 118/363 (32%), Gaps = 22/363 (6%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPS 370 + G P D L A +V + + R L E L Sbjct: 160 HIEPIYGGAPIKPQMDALAAGAQVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSM 219 Query: 371 ALDNRPLKFEE--FEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDP 421 + E QT+ SAT + + + D +D Sbjct: 220 GFQEEIERIIEHLPAKENRQTVLFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDH 279 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 V + DLL +R + ++ T+ + ++L+ G + SD+ Sbjct: 280 SYYVVSGVARTRDLLKVLRAESPD--SAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLT 337 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R +++ +R D LV ++ G+D+ ++S V F S + GR Sbjct: 338 QRDRERVMKRMRDRNLDFLVATDVAARGIDISDLSHVINY-----TFPDSPEVYVHRTGR 392 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQ--QKYNEEHGITPQGLNKKVVDILA 598 R +G AI + + R ++ NEE GI +G + V L Sbjct: 393 TGRAGKSGVAISLVGPRELGSFYYLKLIYKIRPEERDLPTNEEMGILDEGARFERVAALV 452 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + A ++A R + E + + + + L E A+N + EA + Sbjct: 453 SEEPGADSRALARRIWQS-DEGERIFGALVQRVLADAPSERSKRSRPKAENTQRSEA-RR 510 Query: 659 RDQ 661 D+ Sbjct: 511 SDE 513 >UniRef50_B9RED5 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RED5_RICCO Length = 578 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 10/204 (4%) Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 TL E + + + + QT+ SAT + +V V+ G Sbjct: 296 YLTLDEADRLVDLGFEEDIREVLSYFKAQRQTLLFSATMPTQVQNFAISALVKPVIINVG 355 Query: 418 LLDPI---IEVRPVATQVDDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEYLEEHGERV 473 + R + + S I + V++ K +D+ L G Sbjct: 356 RPGAANINVVQRVKYVKQERKKSYILHCLKKTQPPVIIFCKDKADVDDIHLNLLSEGVDA 415 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H +D ER + + G+ DVL+ ++ +GLD ++ V D E Sbjct: 416 VAIHGGMDQEEREHAVSSFKAGKKDVLIATDVASKGLDFADIQHVINYDMPAE-----VE 470 Query: 534 SLIQTIGRAAR-NVNGKAILYGDK 556 + + IGR R + G+A + +K Sbjct: 471 NYVHRIGRTGRCSKKGRATTFINK 494 >UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano RepID=A9J0E5_9TURB Length = 929 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 91/272 (33%), Gaps = 21/272 (7%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNR 375 G L L ++V + ++ R L E L + Sbjct: 596 YGGPKTEYLRAELANGCHILVATPGRLKDFAERNIVSLNKTRLLVLDEADQMLDRGFMDS 655 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-----LLDPIIEVRPVAT 430 + Q + SAT N + + + + G D EVR V Sbjct: 656 VTWTLDQMPSDRQIVMFSATFPNQIQALAQQYLQNYLYLTVGQVGAANPDVTQEVREVQQ 715 Query: 431 --QVDDLLSEIRQRAAI----NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L+ ++ + ++R+L+ +KR A+ + L + G +H D E Sbjct: 716 DDKQAALIEILKHCRSDPSQADDRILIFVESKRRADYVGLMLSDGGFPCTTIHGDRLQRE 775 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R +R G ++V N+ G+D+ + LV +D + IGR R Sbjct: 776 REISLRSFLRGRLPIMVATNVSARGVDINGIELVINMDLPND-----FDMYAHRIGRTGR 830 Query: 545 -NVNGKAILYGDKITPSMAKAIGETERRREKQ 575 GK+I + D A+ R+ ++ Sbjct: 831 CGNPGKSISFYDH---GRDSALALKLRQNLEK 859 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 94/284 (33%), Gaps = 29/284 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + S V + + M L + + Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEM-----------------LNMGFIDDIERIL 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDD---LL 436 QT+ SAT L + + + V P I+ T+ +D LL Sbjct: 171 SHVPERRQTMLFSATVSKPILRIARKYMRNPQVMRVEKKHSPKIDEFYFKTREEDKVELL 230 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 I I L+ TKR + L L G +H D+ +R ++ R G+ Sbjct: 231 DWILSSNNIRMG-LIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGD 289 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 F +LV ++ G+ +P+V V D E + IGR R +GK+ Sbjct: 290 FSLLVATDVAARGIHVPDVEAVVNYDLPFEN-----EYYVHRIGRTGRAGSSGKSFTLVV 344 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + I +R KQ I +G + +IL Sbjct: 345 GSEVHRLRRIQSFTGKRIKQSNMPSPEEIR-RGYEMDLREILRR 387 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 95/299 (31%), Gaps = 17/299 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-QIG 348 T+ E + + G RFL+ G P + L ++V + Sbjct: 117 TRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMK-LRKGVDVLVATPGRLLDLNRQ 175 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + D+ L E L + QT+ SAT + + + Sbjct: 176 NAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATFTDDIRTMAASIL 235 Query: 409 VDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 V + + + D + + + + LV T+ E Sbjct: 236 RSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLVAENNWDH--ALVFVKTRNGVEY 293 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L+E G V +H D R+ + + GE +LV ++ GLD+ ++ LV + Sbjct: 294 LAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLPLVINV 353 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + + IGR R +G A+ AI + ++++ Sbjct: 354 DLPI-----VAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGQTLRREEEP 407 >UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2G6R5_TRIVA Length = 865 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 46/350 (13%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P YV + + I K + E ++L + + + Sbjct: 538 AAYLIPAITYVINQNKKRGPHVLIMANTRELVKQIQEFGEILTKNTSVKVA------VAY 591 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + P L D++ + + V I + M D + Sbjct: 592 GGENNRRQQIRDIAGADIIAAAPGRLLDFIRNNNIKPESIGIVVIDEADKMVSNDFEPQ- 650 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 QT+ SAT + + + + + Sbjct: 651 ----------------CKAVISRCPKNIQTLMFSATWPDEVQFMAQNYLGEYIRVIVNSR 694 Query: 420 DPIIEVRPVA----------TQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE 467 + I + Q+ +++ I++ ++++ TKR E+ +YL Sbjct: 695 ELTININIKQMVIEKDRDSLRQLGEIVEGIKRSKGNESYPKIIIFCKTKRTVEEAHDYLA 754 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDV-LVGINLLREGLDMPEVSLVAILDADKE 526 H +V Y H D++ ++R + + + + + +V +L G+D+ +++ V LD Sbjct: 755 PH-IKVVYTHGDVNQIDREKALNAFKHANYPIAMVCTAVLSRGIDVNDITHVVNLDMP-- 811 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 S IGR R G AI D + R+ +Q Sbjct: 812 ---DSITEYAHRIGRTGRMDRTGVAISLFD---RRKDDRLRYELRKYMEQ 855 >UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH Length = 537 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 90/288 (31%), Gaps = 31/288 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + I + + D R + + Sbjct: 229 TPGRLMDFMRQKLINLGKIEILVIDEADRLLDMGFIP---------------DMRNIIYN 273 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 QT++ SAT L + VD V ++ + + + Sbjct: 274 TPHKKERQTLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQKFP 333 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + I ERV++ + + + L + L ++ +R+ + D R Sbjct: 334 LLYNLISGEKL--ERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFR 391 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ VLV ++ GL + VS V D + I IGR R G ++ Sbjct: 392 NGKVRVLVATDVAARGLHIEGVSHVINYDLP-----QDPEHYIHRIGRTGRAGAEGISVS 446 Query: 553 YGDKITPSMAKAIGETERRREK-QQKYNEEHGITPQGLNKKVVDILAL 599 + D+++ I + + + + P+ + Sbjct: 447 FADEMSSFQIPDIEAVLGNKLECEYPDDAMLAPLPKPKRRIPPKPDTR 494 >UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM67_9FIRM Length = 424 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 97/315 (30%), Gaps = 34/315 (10%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D++ L + V + + M L + Sbjct: 120 EPHIIIGTPGRLLDHIRRRSLDLSGVKTVVLDEADQM-----------------LAAGFR 162 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRP 427 + Q + SAT + + + VV ++ + Sbjct: 163 EDIDALVDETPKKRQVLLFSATMPPEAKKLAHKYMKSAVVADVAEKAVASTVEQRVYETV 222 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERM 486 + L+ +++ +V T+ A +L L+E V +H ++ +R Sbjct: 223 KTHKFSLLVRHLKEI--NPYMAVVFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRN 280 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 ++IR+ VLV ++ GLD+ ++ V D R+ I IGR R Sbjct: 281 QVIREFEKARTQVLVASDIAARGLDVEGITHVFNYDIP-----RNLEYYIHRIGRTGRAG 335 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G +I Y + + + + + KY+E+ I ++ G Sbjct: 336 TQGVSITYATPEDILLLRKLEKAIKEIIT--KYDEKGNIRRIKGPSAKKKVILPGMYKPT 393 Query: 606 TKAKGRGKSRPIVEP 620 K + + + Sbjct: 394 KKKEHKVLGHKGSDM 408 >UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DU64_ZYGRO Length = 494 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 117/377 (31%), Gaps = 15/377 (3%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A L +K + T+ + E G R G Sbjct: 124 AAFAIPILNRLWEDKQPYYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQ 183 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + + +++ + + + + R + E L K + Sbjct: 184 ARELM-RKPHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKV 242 Query: 383 EALAPQTIY-VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLL 436 +T Y SAT + + + + V ++ V + + + Sbjct: 243 IPTQDRTTYLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTY 302 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 I + V++ T TK AE L+ LH D++ +R + + G Sbjct: 303 LIYLLNENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGR 362 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 +LV ++ GLD+P V +V D + +S I +GR AR GK+I Sbjct: 363 RSILVATDVAARGLDIPSVDIVINYDIPVD-----SKSYIHRVGRTARAGRSGKSISLVS 417 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + I E ++ ++ ++E I+ + K + + N + RG Sbjct: 418 QYDLELILRIEEVLGKKLPKENCDKEVVISLRDSVDKANGEVIMELNRRNKEKAARGGGG 477 Query: 616 PIVEPDNVPMDMSPKAL 632 DM + Sbjct: 478 GRRGRMKARTDMDREER 494 >UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54T87_DICDI Length = 586 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 94/318 (29%), Gaps = 40/318 (12%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ E + + R ++ G ++ P L D L L Sbjct: 199 QIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKHHL--SS 256 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + QT+ SAT Sbjct: 257 VQYLVLDEADRMLDMGFMPQIESLID-----------------QIPKERQTLMFSATWPK 299 Query: 399 YELEKSGGDVVDQVVRPTGLLDPI-----------IEVRPVATQVDDLLSEIRQRAAIN- 446 + + D + G + I+ D + EI + + Sbjct: 300 EVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADP 359 Query: 447 -ERVLVTTLTKRMAEDLTEYLE-EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 V+V K +D YL + + LHS D R ++ R +L+ + Sbjct: 360 TNTVIVFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATD 419 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + GLD+P V V + + IGR R G A Y TP++ + Sbjct: 420 VAARGLDIPSVKAVFNYRLP-----GNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPNL-R 473 Query: 564 AIGETERRREKQQKYNEE 581 + + +R ++ E Sbjct: 474 DLVKILQRTNQKIPDFLE 491 >UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BDT5_PARTE Length = 1238 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 116/356 (32%), Gaps = 41/356 (11%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L GI N G P L D+L + + S++ I + + Sbjct: 200 RLKTLCIYGGINNRKNQFYNLGRFPNILVATPGRLLDFLREGATTLANVSYLVIDEADRL 259 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV- 409 + + QT++ SAT + + Sbjct: 260 LELGFEDTIR-----------------EIVQQIRFDRQTVFFSATWPKAVKDLAFDFCQY 302 Query: 410 DQVVRPTGLLDPIIEVRPVAT-----QVDDL--LSEIRQRAAINERVLVTTLTKRMAEDL 462 + G + I Q D L L +I I+++VL+ + K+ E L Sbjct: 303 SPIYVQIGKSNLTINKNIDQEIICLFQKDKLQKLLDILDTLKISDKVLIFSEQKQRCEQL 362 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + + + G LH D +R EI++ R G +L +L GLD+ ++++V D Sbjct: 363 SINMADKGYYTIALHGDKTQPQRDEIMKAFRSGYTRLLCATDLASRGLDVTDITVVINYD 422 Query: 523 ADKEGFLRSERSLIQTIGRAARN-VNGKAILY--GDKITPSMAKAIGETERRREKQQKYN 579 F + I IGR R GKA + DK P +AK + + + + + Sbjct: 423 -----FPKYFDDYIHRIGRTGRGEKKGKAFSFLAYDKDEPRIAKELLKLAQVANLKYD-D 476 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 G+ ++ + N K + R + + Q+ Sbjct: 477 SALQNFAIGIFPQMRNDFEY--NRFKQQQSRDNNQRVNFQFSKNSQEQYHYENQKS 530 >UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Ustilago maydis RepID=PRP5_USTMA Length = 1156 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 84/257 (32%), Gaps = 20/257 (7%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + +VV I G + R L E + + +K Sbjct: 596 MKKTADIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIR 655 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + + + G ++ I+EVR T+ LL Sbjct: 656 PDRQTVLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLL 715 Query: 437 SEI--RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + R L+ + A+DL + L G LH D V+R E I D + Sbjct: 716 EILGELYNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKA 775 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G ++ ++ GLD+ ++ LV D + GR R G I + Sbjct: 776 GNVPIVTATSVAARGLDVKQLKLVINYDVPNH-----MEDYVHRAGRTGRAGQKGTCITF 830 Query: 554 GDKITPSMAKAIGETER 570 A+ I + Sbjct: 831 ITPEQDRYARDIIAALK 847 >UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammaproteobacteria RepID=RHLB_SHEAM Length = 439 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 96/302 (31%), Gaps = 26/302 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + DY+ + + V + + M+ + D R L Sbjct: 141 TTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIK---------------DIRFLFNR 185 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 A + SAT E + + D V + I+ ++D L Sbjct: 186 MPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLK 245 Query: 438 EIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + +V TK E+L LE G RV L D+ +R++I+ Sbjct: 246 LLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQS 305 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 E D+LV ++ GL + +VS V D + IGR R G ++ + Sbjct: 306 ELDILVATDVAARGLHISDVSHVYNYDLP-----DDCEDYVHRIGRTGRAGQKGVSVSFA 360 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + AI + + Y+ + I K A G+N+ R Sbjct: 361 CEEYALNLPAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHAGGRNLRDRNGSPRPSG 420 Query: 615 RP 616 Sbjct: 421 SH 422 >UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GSG9_SORC5 Length = 812 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 103/354 (29%), Gaps = 24/354 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G P D L A ++V + + R L E L + Sbjct: 132 YGGAPMQRQIDALAAGAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERE 191 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-----TGLLDPIIEVRPVAT 430 QT+ SAT + + G L V + Sbjct: 192 LTAILAELPPERQTLLFSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYVYLITG 251 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 L I E ++ TK E + L+ G +L+ D+ +R +++ Sbjct: 252 DKLTSLVRII-EVENPENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMS 310 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G LV ++ G+D+ ++ V D F + + + GR R G Sbjct: 311 ATREGRLRFLVATDVAARGIDISHLTHVINYD-----FPQDAEAYVHRTGRTGRAGRTGT 365 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 AI + T + R +++ E G +V +LA T Sbjct: 366 AIALITPQDVGPLYILRLTYKIRPLEKQLPSE-GELKTRAEADLVAMLAEAFLSKGTHRD 424 Query: 610 GRGKSRPIVEPDNVPMDMS----------PKALQQKIHELEGLMMQHAQNLEFE 653 +R ++ D ++ P A ++ Q A E E Sbjct: 425 DLSLARRLLTHDQAEAIVAGLLRDHLGARPTAQEEASAARRAQQPQRAAARESE 478 >UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI00017925EA Length = 569 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 31/281 (11%) Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + + P L D + + + S++ + + M + L Sbjct: 302 HQELIQAEKPDIIVATPGRLNDLVGIQAIKLDHVSYMVLDEADRMLDMGFKNQIELSLRH 361 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----- 420 R QTI SAT + + + G LD Sbjct: 362 IRP-----------------DKQTILTSATWPTAVQNLANYFAKNPLHITIGSLDLSTVD 404 Query: 421 ---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 I + + L + I + N++V++ K + + E R +H Sbjct: 405 TVTQKIIILKEHQKEGWLDNFISNDLSKNDKVIIFMRKKTSVDKMYENFNSKNIGCRCIH 464 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 +R + D+R G +L+ ++ G+D+ ++SLV D F + + Sbjct: 465 GGRLQADREASLADIRNGVVSILIATDVASRGIDIHDISLVINYD-----FPLNIEEYVH 519 Query: 538 TIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 +GR R G AI K A A+ + ++ Sbjct: 520 RVGRTGRAGKTGSAITLFSKYDKFNASALIGVLEKSKQPIP 560 >UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricomycotina RepID=DBP5_CRYNE Length = 546 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 114/383 (29%), Gaps = 50/383 (13%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + FT+ + ELA + + + Sbjct: 193 QSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQ---------------IQEV 237 Query: 290 TQFDLEMMNELGYCSGIENYSR--FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI--P 345 + + + ++SR + + P TL D L ++ + Sbjct: 238 IDQIGQFTQVGTFLAIPGSWSRNSRIDKQILIGTPGTLVDMLMRGSRILDPRMIRVLVLD 297 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + L + + ++ Q + SAT + E + Sbjct: 298 EADELIAQ----------------QGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFAD 341 Query: 406 GDVVD-------QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + + Q + LS + I + +V K Sbjct: 342 RFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCLVIGQS-IVFCKRKVT 400 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ + E L G V LH D + ER I+ R GE VL+ N++ G+D+P V++V Sbjct: 401 ADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMV 460 Query: 519 AILDADKEGFLRS---ERSLIQTIGRAARNVNG--KAILYGDKITPSMAKAIGETERRRE 573 D G + + I IGR R I D + S + I T + Sbjct: 461 VNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRSKSDVERIMNTLGKPM 520 Query: 574 KQQ--KYNEEHGITPQGLNKKVV 594 K+ + + + L + Sbjct: 521 KKIDARSTTDIEQLEKALKLAMK 543 >UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT5_9PLAT Length = 634 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 32/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L ++ + + + + + + + + + + Sbjct: 343 TPGRLLHFIRSGLISLSMCNFIVLDEADRLLDEGFE-------------GEMREFLEHED 389 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 Q + +SAT + + + D + G ++ I P + D Sbjct: 390 LPPRETRQVVMLSATFEDEVRDLGMSLLADPITVTVGVVGVPPGSINQEIIAVPNGDKHD 449 Query: 434 DLLSEIRQRAAINER------VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 LL ++ ++ ++V +R A+ + L L ++ +ER E Sbjct: 450 KLLELLKTDIDNYKQNNVLKKIIVFVERRRTAQQVASALSMEEVPAVELQGELSQMERDE 509 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + R G+ VLV + GLD+ V V D + + IGR R + Sbjct: 510 SMHRFRYGDAFVLVATAIAARGLDIVGVDHVINYDLPSHIY-----EYVHRIGRTGRVGH 564 Query: 548 -GKAILYGDKITPSMAKAIGETERRREK 574 G+A + D + + ++ + E Sbjct: 565 LGRATSFFDSDSSNDSRIAPKLVEAFEA 592 >UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW1_9BURK Length = 617 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 109/367 (29%), Gaps = 34/367 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + P H + E+ M E L L + L + Sbjct: 43 VSSQTGSGKTFGF-LLPVMHRMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVK 101 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ G G + S R P L D L + + + + + Sbjct: 102 FTKGVRVATVVGGMPYGKQMAS-LRGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEAD 160 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L ++ QT+ SAT + + + Sbjct: 161 RM-----------------LDLGFSEDLEAIDQLCGNRIQTLMFSATFAKRIIGLAENIM 203 Query: 409 VDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDL 462 + + I + A + + + +V T T+ AE+L Sbjct: 204 NNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLNHWLEHPDMVQAVVFTSTQIDAENL 263 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L + G R LH + V R + +R G+ VLV ++ GLD+P +S V Sbjct: 264 ARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIKVLVATDVAARGLDVPAISHVINY- 322 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 G + IGR R G A+ + + I R +++ Sbjct: 323 ----GMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIISVRGIERFINSRIPEEQV--- 375 Query: 582 HGITPQG 588 G+ P+G Sbjct: 376 EGLEPRG 382 >UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8H2_9CLOT Length = 480 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 104/293 (35%), Gaps = 15/293 (5%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I I G D + E + + Sbjct: 117 LKQGTNVIVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTS 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQ-- 441 + SAT N E G + D + I E + + ++ Sbjct: 177 CKAFFSATVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVL 236 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 E ++ T TK+ AE L E ++ G V +H DI R II + EF++L+ Sbjct: 237 YKFKPETTIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILI 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 +++ G+ + +VSLV D + + IGR R +GKAI Sbjct: 297 SSDIISRGIHIDDVSLVINYDIPSD-----SEIYVHRIGRTGRAGKHGKAISLVSNNECR 351 Query: 561 MAKAIGETERRREK--QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + I + + + +Y E+ I Q K++++ AL +N + + KG Sbjct: 352 DFENIEVYTKNKIEPIGIEYCEKDKIEYQKTIKELLNKYALVENQEQDEFKGE 404 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 91/316 (28%), Gaps = 17/316 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNR 375 G T L ++V + I L E L Sbjct: 109 YGGMKMATQAQKLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTD 168 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR------PTGLLDPIIEVRPVA 429 K + Q + SAT + + + + T + Sbjct: 169 IQKILQAVNKKRQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQ 228 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + +LLSE+ ++VLV T T+ A+ L L G +H + R + Sbjct: 229 RRKRELLSELIGTKNW-QQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRAL 287 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R+ G+ VLV + GLD+ + V D + IGR R G Sbjct: 288 REFIEGKVRVLVATEVAARGLDIQGLEYVVNYDLPFL-----AEDYVHRIGRTGRAGKTG 342 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 AI + + + + E+ ++ + G + I K + Sbjct: 343 VAISFVS---REEERTLADIEKLIGQKIRRITVPGYEVSSRELLLKTIEKRRSFGKKQER 399 Query: 609 KGRGKSRPIVEPDNVP 624 ++ + E + Sbjct: 400 NDNVGAQVVGEKNMQG 415 >UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DIA1_LACTC Length = 589 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 112/370 (30%), Gaps = 28/370 (7%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F I P + L L E ++ + + Sbjct: 236 GKTLAFLIPPLCQLNNTPPLNDITKMDGPSALILAPTRELAQQIEAEANKVVKFLHRPTK 295 Query: 296 MMNELGYCSGIE-NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 +++ +G S E +YS P L D L ++ L++ + + + M Sbjct: 296 VVSLVGGHSVEEISYSLSHGCDILVATPGRLIDCLESNILVLQQVRTLILDEADRMIDFG 355 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 + T + QT+ +AT + + G + Sbjct: 356 FEDQLTTILA---------------RTESVKGRQTMMFTATMSSTIERIANGYLNKPAYV 400 Query: 415 PTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLE-E 468 G D I +V + S + + R +++ KR A+ L E Sbjct: 401 RVGSQDTKAQIKQVVQYLPSEEQRFSRLCRDVLPRFRSPIMIFINYKRTADWLAAKFSSE 460 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 RV LH +R + LR G+ D+++ ++ G+D+P VSLV Sbjct: 461 TRYRVTTLHGSKSQEQREHSLNLLRSGKADIMIATDVAGRGIDIPNVSLVVN-----FQM 515 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 S I IGR R +G A+ + + + + N+ Q Sbjct: 516 CTSFEGYIHRIGRTGRAGKSGCALTFLTERDEPKVVEELFHYVKTTDTEGINDVEPAVRQ 575 Query: 588 GLNKKVVDIL 597 N ++ Sbjct: 576 KFNLGRNELQ 585 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 32/284 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + L + + + + M A + Sbjct: 132 TPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELD-----------------DIL 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 + QT+ SAT + E + + + V + + + Sbjct: 175 DQTPGNVQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTM 234 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + + +++L+ +KR A ++ L G + LH D+ ER+ + D Sbjct: 235 LLKHLI-KQEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSK 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +L+ +L G+D+P + V D R+ + GR AR G AI + Sbjct: 294 GRCKILIATDLAARGIDIPSLPCVLNYDLP-----RATSDYVHRAGRTARAGEAGLAISF 348 Query: 554 GDKITPSMAKAIGETERRREKQQKY--NEEHGITPQGLNKKVVD 595 D + + K I + R + +++ E P+ + +K Sbjct: 349 VDHESDAHFKLIEKRIRMKIPREQIPGFERAQEPPKEVTQKKGQ 392 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 84/294 (28%), Gaps = 32/294 (10%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D + + + + + + M + Sbjct: 187 YGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPAVRRIVR-------- 238 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEV 425 QT+ SAT + + V D +D + Sbjct: 239 ---------ETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFP 289 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + + + L +++ ER +V TK A+ LE G + +H + +R Sbjct: 290 VSIEAKNNLLPEFLKKEG--PERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQR 347 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + R G DVLV ++L G+D+ +V V D E I IGR R Sbjct: 348 ERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAE-----PTDYIHRIGRTGRA 402 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G AI + + I + + + H D A Sbjct: 403 GELGWAITFVTEQDVDEFYEIEKLMDKTADIYDAGDLHVGPNPPAVDPERDPAA 456 >UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Plasmodium RepID=Q8I416_PLAF7 Length = 1490 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 57/359 (15%), Positives = 110/359 (30%), Gaps = 20/359 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSAL 372 G L ++V I + +R L E L Sbjct: 831 YGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGF 890 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEV 425 +++ QT +SAT NY + + + G + +E+ Sbjct: 891 ESQIYNILRNCRKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEI 950 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +V LL + + VL+ + A+ L L ++ + LH D +R Sbjct: 951 IEESKKVFRLLKLLGEWIK-YGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDR 1009 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + E VL+ +++ G+D+ + LV I IGR R+ Sbjct: 1010 QFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCP-----DHIEDYIHRIGRTGRS 1064 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 N G A + + A I + + + + + I + Sbjct: 1065 NNIGYAYTFILPNEYTKAYDIYNLLKNNIYYLNKTIDIPQDLENMIIEYTKINS-INEKQ 1123 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 K K K G + + EL GL ++ +N + + ++ D + Sbjct: 1124 KGKNKNLGYKGKGYKFTPDEKSRHQIDIALAKKEL-GLTQENDENEKLQVDDELGDNIE 1181 >UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DML6_9BACT Length = 542 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 103/298 (34%), Gaps = 17/298 (5%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DY + + + + I + M + ++ + Sbjct: 246 TPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKI----VGYLPGRDKRITQL 301 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 L + ++A+ N + EK ++ + +D + + + +L ++ Sbjct: 302 YSATLNQSVLNLAASWLNEKYEKVE---INPETIVSKNVDQKVYTVTANQKENVILWHLK 358 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R+++ K E L + L ++G ++ L D+ +RM I+ + R G+ V Sbjct: 359 NEEVK--RMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQV 416 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+ + +VS V + + +GR R GKAI + D+ + Sbjct: 417 LVATDVAGRGIHVDDVSHVVNYELP-----YEPEDYVHRVGRTGRASALGKAISFADENS 471 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSR 615 I + + E + + G N + + KG + + Sbjct: 472 GFELPEIECYIEMQLPAEVPLEGMTDDHDKKHSERKFAQKRGGNKHSGNRNKGGSRHQ 529 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 12/273 (4%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV I L E L + + Sbjct: 119 LRKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSK 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA 444 T+ SAT + + D + G + ++ +R+ A Sbjct: 179 NTLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIAD 238 Query: 445 INER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +N ++ T+ ++ + L E G LH D+ +R ++ R +LV Sbjct: 239 MNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVA 298 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ +++ V GR R G +I + Sbjct: 299 TDVAARGLDVNDLTHVINY-----SLPEESSGYTHRSGRTGRAGKKGISIALIETREKHK 353 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 +AI ++ ++ + H I + L + Sbjct: 354 IRAIERCLKKNFEEGRIPSGHEICKRRLLSHME 386 >UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54CB8_DICDI Length = 573 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 107/317 (33%), Gaps = 38/317 (11%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 I P ++ + R L L N E ++ + ++ + G Sbjct: 194 ILPAIEHILAQPRQSYYPG--PSVLVVAPTRELANQINQEAEQYLRLVNIEIATI-YGGA 250 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + + P + D++ + L + + S + + + + ++ + Sbjct: 251 PRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGI 310 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 R Q +Y SAT + + + G Sbjct: 311 FNSIRP-----------------DRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLT 353 Query: 423 IE---------VRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHG- 470 V A +VD L+ + + + +E + L+ T+TK+ A+ L Y++ +G Sbjct: 354 ANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGD 413 Query: 471 -ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 R+ LH D+D R I++D + D++V ++ GLD+ +S V Sbjct: 414 NVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVIN-----FSLP 468 Query: 530 RSERSLIQTIGRAARNV 546 + + IGR R Sbjct: 469 SDCETYVHRIGRTGRAG 485 >UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorhabditis RepID=GLH2_CAEEL Length = 974 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 87/277 (31%), Gaps = 39/277 (14%) Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + + + + + + M + +G + +D Sbjct: 688 GRIKHFCEEGTIKLDKCRFFVLDEADRM--------IDAMGFG----TDIDTIVNYESMP 735 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVV--------DQVVRPTGLLDPIIEVRPVATQVDD 434 + QT+ SAT + E + + D++ + E + + D Sbjct: 736 KKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDK 795 Query: 435 LLSEI----------RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 LL + + ++ +V + MA+ L L +H + E Sbjct: 796 LLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRE 855 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R E +R R G VL+ + GLD+ V V D + I IGR R Sbjct: 856 RSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP-----DNIDDYIHRIGRTGR 910 Query: 545 -NVNGKAILYGDK---ITPSMAKAIGETERRREKQQK 577 G+A + + + + + + + ++ + + Sbjct: 911 VGNAGRATSFISEDCNLLSELVRVLSDADQLVPEWMQ 947 >UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP Length = 401 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 64/428 (14%), Positives = 134/428 (31%), Gaps = 66/428 (15%) Query: 162 TVGMIIDQ---RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 +G D + IL+ + + + + Q+G I P Sbjct: 20 KIGEFSDMGLKKEILQGIFKYGFEKPSLIQQKG----------ILPIIHKK--------- 60 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + F I + ++ + ELA + K++ E+ Sbjct: 61 DLI-------AQAQSGTGKTATFVIGTLQNVQYDVFQVQCMVVCPSRELANQIKIVYESI 113 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + R + P LFD L + LL Sbjct: 114 GKFTKIRTQECI--------GGTKIKDDRQLLFSKKPHIIIGTPGRLFDILSIEKLLSQK 165 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ I + M+ + + ++ + SAT Sbjct: 166 LEYLVIDEADEMFSR-----------------GFKVQIFRIFKYLPKECKIGLFSATLPK 208 Query: 399 YELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQ--RAAINERVLVT 452 L+ + D V L+ I + + + L + R+ E+ ++ Sbjct: 209 EILQVIELFISDPVRILVKKEELTLEGIKQFYIPIEKEEWKLEALFDIYRSIKAEQSIIY 268 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 ++ E L ++ + + ++H +++ ER E +++ R G+F VL+ +LL G+D+ Sbjct: 269 VNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFRFGKFRVLITTDLLSRGIDI 328 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 +V+ V D + + S I IGR+ R G AI + ++ + I Sbjct: 329 EKVNFVINYDLPQY-----KESYIHRIGRSGRFGKKGVAINFLSRVDVDNLREIEAYYST 383 Query: 572 REKQQKYN 579 + Sbjct: 384 VIALIPED 391 >UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site n=1 Tax=Pichia pastoris GS115 RepID=C4R2K9_PICPG Length = 555 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 117/365 (32%), Gaps = 27/365 (7%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P +Y+ + ++I + L E +E++ + DL +++ + Sbjct: 209 AYIIPALNYLLQLPHLES-GDQIPQVL--ILVPTRELALQVEKEFKKFTVKLDLNIISLI 265 Query: 301 GYCSGIENY-SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G S EN S P L D + + + +V + + M + Sbjct: 266 GGHSIEENVNSISRGCEIVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQV 325 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + L P F + T +AT + + + G L Sbjct: 326 LKI---------LKLLPTDQNRFTSRPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGEL 376 Query: 420 DPII-----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERV 473 ++ EVR + L + +++ K+ E L L ++ Sbjct: 377 GTVVDTVTQEVRYFPNENAKLNHLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSS 436 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H + +R I++LR G+ DVL+ +L G+D+P VSLV Sbjct: 437 TVIHGSKNQDQRELAIQNLRSGKIDVLIATDLAGRGIDIPNVSLVVN-----FQMANGLD 491 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 S IGR R G +I Y + + + K E + Sbjct: 492 SYTHRIGRTGRAGNRGYSITYLGPEDSEIFSEFRKLLVK--SGSKIPAELRQHDMNEKRN 549 Query: 593 VVDIL 597 + +I Sbjct: 550 MRNIE 554 >UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammaproteobacteria RepID=RHLB_XANC8 Length = 573 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 90/269 (33%), Gaps = 27/269 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHV-TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L DY+ ++ + + + + M+ + + Sbjct: 141 TPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLR--------------- 185 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPVATQVDDLL 436 E QT+ SAT + LE + + + VV + + R ++ Sbjct: 186 RMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQ 245 Query: 437 SEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + R +V TK E + LE HG RV L D+ +R ++ + Sbjct: 246 TLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ ++LV ++ GL + V V D + + IGR AR G AI + Sbjct: 306 GQLEILVATDVAARGLHIDGVKYVYNYDLPFD-----AEDYVHRIGRTARLGEEGDAISF 360 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEH 582 + I ++ + E Sbjct: 361 ACERYAMSLPDIEAYIEQKIPVEPVTTEL 389 >UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=3 Tax=Piroplasmida RepID=A7AWZ5_BABBO Length = 994 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 18/266 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSAL 372 G P + L +V I G + R + E Sbjct: 496 YGGSPIGEQLNALKRGVEIVCGTPGRLIEVLTISNGKVTNLRRVTFVVIDEADRMFDLGF 555 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEV 425 + + QT SAT + + + G +D + V Sbjct: 556 SPQISAIVDNIRPDRQTALFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQHVMV 615 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 P ++ LL + + + ++V + A+ + L +HG LH D +R Sbjct: 616 LPERQKMYALLKLLGEWHE-HGSIIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDR 674 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++D R G +L+ ++ G+D+ V LV + +GR R Sbjct: 675 EFTLQDFRDGTKGILIATSIAARGIDVKNVVLVINYATP-----DHIEDYVHRVGRTGRA 729 Query: 546 VN-GKAILYGDKITPSMAKAIGETER 570 N G + + + + I + + Sbjct: 730 GNIGTSYTFITPEEGAKSHDIIKAMK 755 >UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1FAF2_ACIC5 Length = 430 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 59/356 (16%), Positives = 102/356 (28%), Gaps = 16/356 (4%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + I P + L + LL + T+ Sbjct: 26 PVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAMERLLATKGKHPAVLILTPTRELALQ 85 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDR 355 + + ++ + + G + D L A L+V + + R Sbjct: 86 VEKQYAQLAGKSLPQAATLIGGASENNQIRD-LKAGARLIVATPGRLEDFLERRLIDLKR 144 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 L E L + QT+ SAT + + V Sbjct: 145 IEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQTMCFSATIDPAVAHLLDEILTNPVRLS 204 Query: 416 TGLLDP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G +I A Q L+ + A + LV TKR E + + L+ Sbjct: 205 FGSTQQTSSSVRLIAYEVDADQKAALVHRVV--TAEEGQSLVFVGTKRRTEHVAKRLDRA 262 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G V LH D +R + D + G VLV ++ G+ + ++ V D K Sbjct: 263 GISVAVLHGDRSQSQRNRALEDFQRGRARVLVATDVASRGIHVDNIAQVINYDMPKM--- 319 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 I GR R G A + + +T R+ ++ + G+ Sbjct: 320 --TEDFIHRAGRTGRAGATGVAATFYTPLERREFNRFEKTLNRKIERVMIASDSGL 373 >UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Tax=Eukaryota RepID=DDX42_DICDI Length = 986 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 85/251 (33%), Gaps = 14/251 (5%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L A ++V I I + +R L E + L Sbjct: 425 LKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDR 484 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT E + + D + G + I++V + + L+ Sbjct: 485 QTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQL 544 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 VL+ TK E L+ L + G + LH D + +ER + I+ + G+ ++L Sbjct: 545 ALLLSQGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINIL 604 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P + V D R S IGR R G A Sbjct: 605 IATDVAARGLDIPLIKNVVNYDT-----SRDIESHTHRIGRTGRAGNTGVAYTLITPKDI 659 Query: 560 SMAKAIGETER 570 + + + Sbjct: 660 HFSVDLIKNLE 670 >UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YKV9_MOBAS Length = 1128 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 103/296 (34%), Gaps = 24/296 (8%) Query: 46 TFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSS 105 IA ++D +RP + +A ++ V + + Sbjct: 36 AAMIARRVSDDRRPLIYIAETGRRRHDIFALASILAGPGTV-------------CELDAP 82 Query: 106 DTFIEKDASVNEHIEQMRLSATKAML--ERRDVVVVASVSAIYGLGDP-DLYLKMMLHLT 162 D F V R++ + +L E+R V++ + +A+ P ++ + + Sbjct: 83 DGFPGDGLPVTVATAGNRMAMLRWLLDEEKRPSVLITTPAALIRKVPPKSVWEGLHSEIR 142 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 VG +DQ A+ +L L Y +D+ + G RG+V++IFPA + R+E D V Sbjct: 143 VGETLDQTALQAKLQHLGYWLDDRVDEPGEAAFRGKVLEIFPA-AAPRPCRIEHEDGVVT 201 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV-----LLEN 277 + +DP++ + VS + P + V + E E L + Sbjct: 202 AIRSYDPVSQRSVSETDCLIVDPASEIVGADDGATGRQEIDGETLQTGAPDSERFLCRQY 261 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + Q LE E+ + R L D+L + Sbjct: 262 ERPETVFDYLQDADMVLETGAEIRADEVFDALQRI--DADDPHRHAVLADHLDRET 315 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 80/260 (30%), Gaps = 21/260 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAIN 446 + ++ATP L+ + D + T ++ R + + A Sbjct: 731 HILTMTATPIPRTLQSGFVGLSDLSIIATPPNRRSPVKTRVGPFDDAAVRDALTAERARG 790 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + V E + L+E LH + E + + GE DVL+ Sbjct: 791 GQSFVVCPRIEDLEPMAAKLQELVPEQTTVTLHGKMKPDEVEDAMLAFAHGEHDVLLATA 850 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+ + + + AD+ G + V A +T + Sbjct: 851 IVESGLDVANANTMVVCHADRFGLAELHQLRG--------RVGRGARRGHVLLTTEADRE 902 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +GE R R + + G G + D+ G + + Sbjct: 903 LGEHARSRLEALEEFSTLG---AGFDIAARDLDLRGTGELLGDEQAG-------HVQTIG 952 Query: 625 MDMSPKALQQKIHELEGLMM 644 + + K L++ + +G Sbjct: 953 IGLYRKILERAVALAQGQPE 972 >UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus RepID=Q1J0Y7_DEIGD Length = 1041 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 90/279 (32%), Gaps = 25/279 (8%) Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRA 443 A T+ +SATP L S + D T I+ + I Sbjct: 653 KAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPVTVRDAILNEI 712 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + YL R H ++ E EI+ G FDVL+ Sbjct: 713 ERGGKVFYIHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLL 772 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+PE + + I AD+ G + L Q GR R + Y P Sbjct: 773 STTIVETGLDIPEANTILIERADRLGLAQ----LYQLRGRVGR---RQQTAYAYLFYPPR 825 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEP 620 + E +RR + G D+ G NI + G Sbjct: 826 ---MTENAQRRLWAI---ADLQDLGSGHLLAEKDMEIRGVGNILGEEQHG--------HV 871 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 V +D+ + L + + L+G ++ + + R Sbjct: 872 QAVSIDVYTEMLAEAVARLKGEPLEAPPTVSIDLPINAR 910 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI-------F 203 P L L VG + +L RL L Y R + G F +RG+ +++ Sbjct: 89 PTHPEDHALTLRVGASYPREDLLNRLERLGYER---DEEPGYF-LRGDTLELRLEPGAGV 144 Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 P D + LR E F +E++ L P I FT+ P Y+T Sbjct: 145 PNGEDPVWLRAEFFGDELDTLRRLLPG-ELTGERIQTFTLEPTADYLTE 192 Score = 50.2 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 90/331 (27%), Gaps = 34/331 (10%) Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 D L + +T +I A T V++ L R + Sbjct: 163 DTLRRLLPGELTGERIQTFTLEPTADYLTEVKWDATRLDLLPGRVFLDAPEFYASSLGPL 222 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + L + + ++ +L ++ + RV++ Sbjct: 223 IDTLWPRLREREVTSFGRAPLELTDVDLGLKV-LPYYRARLSELERDVAEWRGAGYRVMI 281 Query: 452 TTLTKRMAEDLTE-YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 R A L + L H R + + LR G G Sbjct: 282 LVRHDRTAAYLADKLLGTHEIPWRSV-----PRVEEGALGFLRAGG----------EGGF 326 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 +PE V + + GF G A R L G +T ++ +G+ Sbjct: 327 AIPEHRTVVLTEDLIYGFQG---------GSALRGKK----LVGKPVTDALGLHVGDYLI 373 Query: 571 RREKQQ-KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---D 626 E ++ T G+ + +++ G + R + P Sbjct: 374 HPEHGIGQFQGLETRTVLGVTRDYLNLEYRGGARLAVPIEQLPVLRRHPGTTDDPPVLSS 433 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 K + + + A L + AA+ Sbjct: 434 FDKKDWARAKEKARKNAEEVAARLLVQYAAR 464 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 19/248 (7%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 +LE IE G + PP L + D +++ ++ Sbjct: 399 NLEYRGGARLAVPIEQLPVLRRHPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVAARLL 458 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 A ++ F D + + +FE A Q + T + Sbjct: 459 VQYAARQVTPGNSFPPQPEWDAQVERNFKFELTADQKTALKETMRD-------------- 504 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED----LTEYLEE 468 + D +I + + L + ++V + T +AE E ++ Sbjct: 505 LEAPHPADRLISGDVGFGKTEVALRAAHRVVGHGKQVAMLVPTTLLAEQHTSTFVERFKD 564 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEG 527 RV L + I+ DL G+ D+++G + LL + ++ L+ + + + G Sbjct: 565 LPVRVEGLSRFTGDKQAKAILADLAAGKVDIIIGTHRLLSSDVQFKDLGLIIVDEEHRFG 624 Query: 528 FLRSERSL 535 + E+ Sbjct: 625 VGQKEKLR 632 >UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DL95_9BACT Length = 482 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 103/284 (36%), Gaps = 15/284 (5%) Query: 332 DGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 ++ I + G+ + + E + + QT+ Sbjct: 123 GAQVISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTV 182 Query: 391 YVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIE-VRPVATQVDDLLSEIRQRAAI 445 SAT + S + V+ G + + E V + L+E + Sbjct: 183 LCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEWAVSVYPENHLKLTEKLLKKHK 242 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N++V+V K +++ E L++ G V LHS ++ R + ++ R + +LV ++ Sbjct: 243 NDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILVATDV 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 G+D+P + LV D + GR AR +G I + + K+ Sbjct: 303 ASRGIDIPGLPLVVNYDLP-----YDFPDYVHRAGRTARAGKSGLVISFYNGRKEKTIKS 357 Query: 565 IGETERRREKQQKYNE---EHGITPQGLNKKVVDILALGQNIAK 605 E R+ + +N+ E ++ + L KK D + NI Sbjct: 358 FEERTGRQMLRVSFNQIMDEKQVSQKPLAKKKQDSVRKKANIRD 401 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 96/330 (29%), Gaps = 38/330 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D +L+ + I + M L Sbjct: 164 TPGRLMDLFERGKILLNGCELLVIDEADRM-----------------LDMGFIPDIEFIC 206 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDD 434 + QT+ SAT + + + + T +V A Q D Sbjct: 207 DKLPETRQTMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRD 266 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + E ++ K +L ++L+ G +H D+D R++ + + Sbjct: 267 TLEWLLAN-DQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKS 325 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ ++LV ++ GLD+ VS V D + IGR R G+A Sbjct: 326 GDVNILVASDVAARGLDIKGVSHVFNFDTPWH-----PDDYVHRIGRTGRAGAKGRA--- 377 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + A+AI E+ + K + + ++ D A + Sbjct: 378 FTLVADEDAEAIANVEKLTGAKIKVF-----GKEDVRVELADGSAKNTGSDDEAKDEKPA 432 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + D + + E Sbjct: 433 EKKSRSRSRKRDDEGDAPRKPRRESAEDKP 462 >UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPF9_9SPIO Length = 605 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 20/343 (5%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + + + + I + M+ + L A + + + F Sbjct: 139 TPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLS--VLSKAEERQTMLFS 196 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + + T + +D ++ + ++ LL +R Sbjct: 197 ATLNTWVKNLAWEYTID------AKEITIDADNVTVDEINQKLFHVAADQKMSLLLGILR 250 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 N ++ TK+ E + + L +G +L D+ +R+ II + G+ L Sbjct: 251 NEKPEN--TIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTCL 308 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT- 558 V ++ G+D+ ++++V D E + + IGR AR G A + Sbjct: 309 VATDVAARGIDINDLAMVINYDLPNE-----AENYVHRIGRTARAGKTGAAYSLCSEQDV 363 Query: 559 ---PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 P + K I ++ E+ Q + K + KSR Sbjct: 364 YNLPDIEKYIEAKIPVVIPGEEDFEKDRSADQYIRLDRDSADEERGGRFGRKPRPGEKSR 423 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + A + + + Q + + A + Sbjct: 424 REDKDARRGTKTARPASRTADSKRKKKGTQGEDKTDRKSADSL 466 >UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gammaproteobacteria RepID=Q12PC3_SHEDO Length = 468 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 121/433 (27%), Gaps = 41/433 (9%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P + + + + + L R +L RL + Sbjct: 65 AFLLPAMQRIISTKALSKRDPRVLILLPTRELAQQVYGQL----RLLVANTQYKAVSILG 120 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + + P + D+L L + + + + M A + Sbjct: 121 GENFNDQAKALSREPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLA 180 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN-YELEKSGGDVVDQVVRPTGL- 418 + + QT+ SAT + E + + G Sbjct: 181 AIN----------------AAADHKRRQTLMFSATLEHDEINEIAATLLKSPNHIAIGAA 224 Query: 419 ------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + I + LL + N+++++ T T+ E L L + G Sbjct: 225 YTEHADITQRIILVDHLDHKQALLEHVL-TNETNKQIIIFTATRVDTERLASLLADKGFA 283 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 L +++ R +I+ G+ +LV ++ GLD+ VSLV D K Sbjct: 284 TAALSGNLNQGARNQIMDQFARGQKQILVTTDVASRGLDLINVSLVINFDMPKF-----A 338 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + IGR R G A+ + R+ + + K Sbjct: 339 EEYVHRIGRTGRAGAKGDAVSLVGPKDWDSFIKVQAFLRKTFEFTVIDGLKAKFSGLKAK 398 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 D + + +AK +K + + + + +L Sbjct: 399 AKTDKVNSTKRVAKAASKAKSPHAKPAPKRDKRFSTGVDVGDAPMRR------KVKPSLI 452 Query: 652 FEEAAQIRDQLHQ 664 E A I+ + Sbjct: 453 IETDASIQSDIDN 465 >UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 Tax=cellular organisms RepID=DDX27_HUMAN Length = 796 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 24/347 (6%) Query: 329 LPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L A +++ I + + L E L + + + + Sbjct: 336 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 395 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + + V L I +RP + + Sbjct: 396 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 455 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + V++ T TK+ A + L G +V LH ++ +R+E +R + + D Sbjct: 456 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 515 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ V V + + + +GR AR G+++ + Sbjct: 516 ILVATDVAARGLDIEGVKTVIN-----FTMPNTIKHYVHRVGRTARAGRAGRSVSLVGED 570 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD-------ILALGQNIAKTKAKG 610 M K I + + K + ++ + + +K+ + A + + +++A+ Sbjct: 571 ERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQI 630 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 R + + + ++ Q E + + A EF+ A + Sbjct: 631 NTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKALQ-EFDLALR 676 >UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Bacteria RepID=C7PAU3_CHIPD Length = 414 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 63/422 (14%), Positives = 130/422 (30%), Gaps = 68/422 (16%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I R L EL + R F+ ++ ++V ++ Sbjct: 10 EEIKRSLEELGFKRPTDI----QFKAIPSILK----------------GDDVLAIA---- 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I P H +Q K + R V++ +L + Sbjct: 46 --QTGTGKTAAFAI-PVLH-------KLQQYHPRKTKGEVRCVVMVPTRELAVQISEVFE 95 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADGLLVVDESHVTIP 345 +N LG G++ + + P +FD + + + + + Sbjct: 96 RLAKYTKLNILGLHGGVDQAPQLKKLAQGVDVLIATPGRMFDLISQGFIDLSQTGILILD 155 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M R V QT++ SAT + + Sbjct: 156 EADHMLDLGFIRDIRDVLKHL-----------------PRRHQTLFFSATIDEDIKDLAY 198 Query: 406 GDVVDQVVRPTGLLDPI------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 V + + DP+ L + + N ++LV TK A Sbjct: 199 SVVNNPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERLVKEFPEN-KILVFVRTKVRA 257 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 E + +E G + +H + R++++ + + G+ +L+ ++ G+D+P+V V Sbjct: 258 ERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLLITTDVNARGIDIPDVEYVV 317 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + + +GR R G+A+ + + AI + + K Sbjct: 318 NYDLP-----DVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDAIQQYLGKEITVMKI 372 Query: 579 NE 580 ++ Sbjct: 373 DK 374 >UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6Y6_9GAMM Length = 402 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 108/364 (29%), Gaps = 18/364 (4%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + V L +K+L E N + L + Sbjct: 25 TLIQQEAIPLLLAGEDVLACAATGTGKTAAF-VLPLLQKLLDEPNHGRLPKALILAPTRE 83 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYR 352 L + + ++ G+ P YL +V+ + + Sbjct: 84 LAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLENGCDIVIATPGRLLNLVENEQAD 143 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK-SGGDVVDQ 411 + E L A QT SAT +E + + + Sbjct: 144 LSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQTSLFSATLAGSGVELFANALLPNA 203 Query: 412 VVRPTGLLDPIIEVRPVA-------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + LL+ + + E L+ K AE+++ Sbjct: 204 SRIEVDAANQYAQQVSQQVYLADNREHKQALLAAVI-KQTDCESALIFCNKKERAEEVSA 262 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L+ + +H D + +R E R R G+ LV ++ GLD+P+VS V D Sbjct: 263 FLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVATDVAARGLDLPQVSHVINYDVP 322 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G I +GR R G+ + + P K + E + + G+ Sbjct: 323 FRG-----DIYIHRVGRTGRA--GQTGTAVNLVEPHDHKNLQRVEHHIGQPLPVLKMKGL 375 Query: 585 TPQG 588 TP+ Sbjct: 376 TPKA 379 >UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q863_SULNB Length = 447 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 99/297 (33%), Gaps = 15/297 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRA-RKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +++ + I + +A R + E K Sbjct: 121 LKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERS 180 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLLSEIRQR 442 Q I VSAT ++ + + I + PV + L Sbjct: 181 QKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKEALLAWLIS 240 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + E+VL+ K +A+ + E L +V LH + ER + + R G + +LV Sbjct: 241 SGNYEKVLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRILVA 300 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+ ++ +V D + I +GR R G AI ++P Sbjct: 301 TDIAARGLDISDLDVVINYDIP-----HVKHDFIHRVGRTGRAGREGIAI---TLVSPDE 352 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + + ++ + K P+ + + + + T K SRP V Sbjct: 353 IEQLHDLQKVLGGKIKEVILPEYAPKEVKARGFLLHGPQRRKKSTSVKRESASRPGV 409 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 91/304 (29%), Gaps = 16/304 (5%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I + R L E + + + Sbjct: 421 LEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDR 480 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDD-LLSEI 439 QT+ SAT + + D + G L+ + V P Q + LL + Sbjct: 481 QTLLFSATFKRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLCHL 540 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + A L+ K AE + L LH D+D +R ++I + E D+ Sbjct: 541 VKFLAEG-SCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDI 599 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ GLD+P + V D R + IGR R G A + Sbjct: 600 LIATDVAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAHTLVTEKD 654 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 A + ++ + + G+ + T + R Sbjct: 655 KEFAGHLVRNLEGADQPVPSDLLELAMKSSWFRSSRFKQGKGKKVTPTHVGLGYRERGGG 714 Query: 619 EPDN 622 P N Sbjct: 715 NPSN 718 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 105/317 (33%), Gaps = 29/317 (9%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + E +++ + + G G + S P L ++L L Sbjct: 63 LADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLRKGTL 122 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + + M + E QT+ SA Sbjct: 123 KLNALNTLVLDEADRMLDMGFVDSIR-----------------EIVELTPSNRQTLLFSA 165 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INERV 449 T G+ S + + P IE V ++ D + + Sbjct: 166 TYGDGIEAISKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQA 225 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V TK ++ + ++L EH + +H D++ +R +++ VLV ++ G Sbjct: 226 IVFCNTKAESQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARG 285 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+ E+ LV D ++ + + IGR R G A + + +T + + E Sbjct: 286 IDVKEIDLVVNYDTTRDTDVHT-----HRIGRTGRA--GAAGIAVNLVTSKDDYKVRDIE 338 Query: 570 RRREKQQKYNEEHGITP 586 R + E I P Sbjct: 339 SRFNITANFIELEAIDP 355 >UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ETV2_ARCB4 Length = 351 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 86/296 (29%), Gaps = 14/296 (4%) Query: 329 LPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V S + I + E L K Sbjct: 44 LSNGIDILVSTSGRLLEHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNR 103 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAA 444 Q + SAT + + + D VV II+ + V D + Sbjct: 104 QIMMFSATLNQNVKKLAKEFLSDPVVIEVAKQRSSVKIIDQQIVLVDEDKKAELLSYLIG 163 Query: 445 IN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +VLV K+ A+DL +L G +H DI R + +R + G+ VLV Sbjct: 164 SRNYSQVLVFVNMKKEADDLVAHLNLDGLPAECIHGDIRQTARAKALRKFKSGDIRVLVA 223 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+D+ + +V + IGR R N G AI Sbjct: 224 TDIAARGIDIELLPVVVN-----FALPETITDYTHRIGRTGRAGNAGTAITLLSVKDYKF 278 Query: 562 AKAIGETERRREKQQKY--NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 I + + + E P+ + + + K+ Sbjct: 279 MIEIEKELIINIPRIEVEGFEATEKKPRLFKARPKPLSQRKAESKAKEQNKTAKTS 334 >UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5L3_THEAS Length = 994 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 108/332 (32%), Gaps = 30/332 (9%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L P + + + ++ +H + + +G Sbjct: 556 LYRFVPRSRQEEILNDFAEGRVDILIGTHRILGDDVRARNLGLIVLDEEHRFGVMQKERW 615 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 R + + +SATP L+ + G D V T +D V V+ Sbjct: 616 RERFPGAD--------VLMLSATPIPRTLQLALGGYKDISVMTTPPVDRRPVVTVVSPWQ 667 Query: 433 DDLLS-EIRQRAAINERVLVTTLTKRMAED--LTEYLEEHGERVRYLHSDIDTVERMEII 489 D+L+ + + + +V + L G RV H + E ++ Sbjct: 668 DELVKGAVLRELSRGGQVFWVHNRIQSMHRAFLRAKALLPGVRVEMAHGRMRDSELESLM 727 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 G DVL+ ++ GLD+P V+ + + DA + G + L Q GR R + Sbjct: 728 ARFVEGRLDVLLCTTIIESGLDLPRVNTIIVEDAHRMGLAQ----LYQLRGRVGRRSDQ- 782 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + + P G R ++ + G + ++D+ G Sbjct: 783 --AFALFLYPR-----GAEAGRALERLEAIGSLEELGSGFHLAMMDLSIRGGGELLG--- 832 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + ++ ++ + L++++ L+G Sbjct: 833 ----TAQHGHVSSLSPELYFQMLEREVTRLKG 860 Score = 92.9 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 R + + ++ ++ A+ P L G + +++ ++ Y Sbjct: 67 RGRVLEDWIRLGGGLITSAAGAVLPALSPS----GHFQLRKGDRC-RSSLIHWISSQGYE 121 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 R + G + +RG ++D+FP D A+RV D+ VE + +F P T + V+++ Sbjct: 122 RVPVVWAPGQWALRGALVDLFPPG--DRAIRVAFDDDLVEEIRVFSPETQRAVASLDS 177 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 15/128 (11%) Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERV 473 +D ++ + + L + A +V+V T T + L RV Sbjct: 494 PMDRLLVGDVGFGKTELALRAAFKAAMSGYQVVVVTPTTLLASQHLSTFASRLSPFPLRV 553 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGI------NLLREGLDMPEVSLVAILDADKEG 527 L+ + + EI+ D G D+L+G ++ + L+ + + + G Sbjct: 554 EALYRFVPRSRQEEILNDFAEGRVDILIGTHRILGDDVRAR-----NLGLIVLDEEHRFG 608 Query: 528 FLRSERSL 535 ++ ER Sbjct: 609 VMQKERWR 616 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 100/319 (31%), Gaps = 22/319 (6%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + V + + M L + L Sbjct: 170 TPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFK---------EALETILSATQPDDS 220 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPVATQ---VDD 434 + A +T SAT + + + + V G IE + + Sbjct: 221 DSVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTE 280 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++ + Q ++ TK +L + L + G LH D ER ++ + Sbjct: 281 VIGRLLQTLPEFYG-IIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQ 339 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 + V+V ++ GLD+ +++ V S + IGR RN G AI Sbjct: 340 RQVKVIVATDVAARGLDIKDLTHVVN-----HSLPWDSESYVHRIGRTGRNGQKGTAITL 394 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + ++ + + + + + + + + + ++ + + Sbjct: 395 VNPEQLTLLRRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLI 454 Query: 614 SRPIVEPDNVPMDMSPKAL 632 I D ++S + L Sbjct: 455 QDLIQAEDINFKELSKEEL 473 >UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CDDA3 Length = 1138 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 112/378 (29%), Gaps = 32/378 (8%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 GE + L A +++ + R + E + + Sbjct: 172 GENKHEQWKMLKAGVEILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIR 231 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDD 434 + QT+ +AT + + V G + I P+ + + Sbjct: 232 SIMQQIRPDRQTLLFTATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSN 291 Query: 435 LLSE-IRQRAA---INERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEII 489 + I +VL+ L+E +++ LH D ER +II Sbjct: 292 FKDQWILNNLNLCLQKGKVLIFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDII 351 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--N 547 + + ++L+ ++ GLD+PE+ V D + + I IGR R + Sbjct: 352 NKFKAAK-NLLIATDVASRGLDIPEIKTVINYDLP-----QDTDTYIHRIGRTGRAGATD 405 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK-- 605 G A A + + + N E K LG + AK Sbjct: 406 GTAYSLILMSESKFASDMLKVMEISGQPVPPNLEEVAMNDDQFKAQRLATKLGVDFAKGK 465 Query: 606 ----------TKAKGRGKSRPIVEPDNVP-MDMSPKALQQKIHELEGLMMQHAQN--LEF 652 ++ + + D + D + Q I + + Q + Sbjct: 466 DSSKLLKQALSRQRNTKHGLGYKQEDELSIKDQIKADVDQDIKKQKISQTQAPPPPLFDL 525 Query: 653 EEAAQIRDQLHQLRELFI 670 E+ +D L Q + + Sbjct: 526 EQLISQKDLLEQEEQKLL 543 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 102/316 (32%), Gaps = 26/316 (8%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + I M R D + L E L K E+ Sbjct: 143 LQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNR 202 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIR 440 Q + SAT + + G + D V ++ ++ +A +VD L I+ Sbjct: 203 QNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIK 262 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +VLV TK A+ + + L R +H + R + + G+ +L Sbjct: 263 TNKWK--QVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKIL 320 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ ++ V LD + IGR R G AI Sbjct: 321 VATDIAARGIDIHQLPYVINLDLP-----NVAEDYVHRIGRTGRAGEAGHAISLVAAEEA 375 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + KAI + N + G +K++ L Q + + +S + Sbjct: 376 LLLKAIEKFIG--------NPLPKVDVVGFEQKILKAEPLKQG--GQRQRRPSQSARPGQ 425 Query: 620 PDNVPMDMSPKALQQK 635 S + Sbjct: 426 KAKTNHASSQQRRSDW 441 >UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1ECQ6_9CHLO Length = 401 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 34/265 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + L + + + + M + + Sbjct: 149 TPGRLCDLMKQGSLSLRRCDFIVLDEADRMLEMGFEPQLKEI--------------FGEL 194 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------------PIIEVRP 427 QT+ +AT + + + G D V Sbjct: 195 PSSESGRQTLLFTATWPKAVRKMAASYLAKDTESSEGNGDGGDGAELAANKAVSQRFVHA 254 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + D + ++ RV+ TKR E+L + + G +H D ER Sbjct: 255 TDDEKDKKMYDVLCELPEGSRVVAFANTKRRVENLAKTFWDFGFGTVSVHGDKKQNEREA 314 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ + ++ ++ GLD+ V+ V D R S + IGR R Sbjct: 315 ALKKFVDNQCPLMFATDVAARGLDIKGVTHVVNFDM-----ARDVESYVHRIGRTGRAGE 369 Query: 548 -GKAILYGDKITPSM-AKAIGETER 570 G+++ + + A A+ + R Sbjct: 370 LGESVTFWNPDYDKECAPALCKIAR 394 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 26/265 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAI 445 + +SATP L + + D V T EV V ++ D L+ + + Sbjct: 617 DVLSLSATPIPRSLSMAMRGIRDISVIATSPRGRG-EVFTVTSRWDPSLAHDAVLRELMR 675 Query: 446 NERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V E + L G R H + E + + + G+ ++LV Sbjct: 676 GGQVYYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCT 735 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + + D + G + + Q GR R L+ + S Sbjct: 736 TIIESGLDVPRANTLIVDDVRRLGLAQ----MHQIRGRIGRRSENAYALFFYESEES--- 788 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDN 622 G R R + G G D+ G I T+ G + Sbjct: 789 --GGQTRERLEAL---GAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGF--------KER 835 Query: 623 VPMDMSPKALQQKIHELEGLMMQHA 647 + + K L++++ +L G+ ++ A Sbjct: 836 IGYTLYLKKLKERVDQLRGIEIKPA 860 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 20/199 (10%) Query: 59 PTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 +VL P + A L ++K + D + + Sbjct: 6 KILVLVPTRQEALALDSDLKVLEVGESRLLEEPPLDSEKL----------------RSGD 49 Query: 119 IEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 R L + ++VA+ A+ P + K L L G + + + LAE Sbjct: 50 SFLRRGHTLSGWLNAKSGMLVATPGAL---VTPFRFGKTGLTLAAGKRLGRDTLTSWLAE 106 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R + +Q G F VRG ++D F S+ LRVE FDE+VE + F P + + + Sbjct: 107 NGYRRAELVWQPGEFAVRGALVDFFDP-SEKAPLRVEFFDEDVESIRFFQPRSQRSFQNL 165 Query: 239 PRFTIYPKTHYVTPRERIV 257 P F + H + Sbjct: 166 PHFIVRSVNHSEDEQRERS 184 >UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=Dugesia dorotocephala RepID=Q9GV07_9TURB Length = 573 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 90/241 (37%), Gaps = 21/241 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L +L + + + + + M + + Y S +R + Sbjct: 250 TPGRLIHFLELVWVSLRYIKYFVLDEADRMLDEEGFYEVVNKIYKEAHQSGDADRSIHLS 309 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLL 436 SAT N + + + + G++ + + A Q D + Sbjct: 310 ----------MFSATFPNEIQTLASRLLSNYLFLAVGVVGSANCDVKQEIIRAEQRDKVT 359 Query: 437 SEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 S I + +E+ L+ +KRMA+ L G + +H D + +R + D + G Sbjct: 360 SAIELIKTIPDEKTLIFVESKRMADFFGIKLGYLGFKATTIHGDREQEQRESALNDFKSG 419 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + +V N+ GLD+P+V V +D + + + IGR R N G+AI + Sbjct: 420 RINFMVATNVAARGLDIPKVDNVINIDMP-----DTIDTYVHRIGRTGRCGNVGRAISFF 474 Query: 555 D 555 D Sbjct: 475 D 475 >UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasmida RepID=Q4UA43_THEAN Length = 757 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 21/284 (7%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + + P + D L ++ ++V + + M Sbjct: 451 GGRNAESQAFELRKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVL 510 Query: 360 TLVEYGFRLPSALDNRPLKFEEFE-------ALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + + D E E T SAT + + + Sbjct: 511 KYILDCIPSTNLKDRDESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPA 570 Query: 413 VRPTGLLD----PIIEVRPV--ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I + ++ L E + +++ K+ + +T+++ Sbjct: 571 FISIGDVGGGKTSITQQLDFVQESKKTRHLEETLETLEPP--IIIFVNLKKNTDVITKHI 628 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G R LH R + + + G +D+LV +++ GLD+ + +V D K+ Sbjct: 629 TKIGYRAVSLHGGKTQESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMPKD 688 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 ++ IGR R G +I + + + + Sbjct: 689 -----IQTYTHRIGRTGRAGLKGLSISFVTDADVDLFYDLKQLL 727 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 81/257 (31%), Gaps = 15/257 (5%) Query: 331 ADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + + + D+ + E L + A QT Sbjct: 132 KGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQT 191 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQR 442 + SAT + + + + + + + LL+ Sbjct: 192 LMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLAD 251 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +++ V V T+ + L E L E G V LH + R +R +R G +LV Sbjct: 252 ETLDQAV-VFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+P +S V G + IGR R G+AI Sbjct: 311 TDVAARGLDVPTISHVIN-----FGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGK 365 Query: 562 AKAIGETERRREKQQKY 578 +A+ + R + Sbjct: 366 IRALEDYLEARLNVSEI 382 >UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buchnera aphidicola RepID=MFD_BUCAI Length = 812 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 45/347 (12%), Positives = 110/347 (31%), Gaps = 32/347 (9%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + +F + + ++ +H + + + Sbjct: 345 INILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDE--------E 396 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + + ++ATP L + + D + + + Sbjct: 397 HRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQ 456 Query: 430 TQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERM 486 L+ + I + + +V + ++ E L H + ++ Sbjct: 457 EYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSILIPEASIKIGHGQMKNIDLK 516 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +++ + +F+VL+ ++ G+D+ + + I ++D G + L Q GR R+ Sbjct: 517 KVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGLSQ----LHQLRGRIGRSN 572 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAK 605 N Y + + K I ++R + + G G + D+ G I Sbjct: 573 NQ---AYALLLVNNFNK-ITSDAKKRLEAISSVDNFGG---GFSLSNQDLEIRGVGEILG 625 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLE 651 + G N+ + L+ I L+ G + ++L+ Sbjct: 626 KEQSG--------HIKNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLK 664 >UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellular organisms RepID=C4M986_ENTHI Length = 723 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 85/274 (31%), Gaps = 26/274 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D L + + + + M + GF+ + Sbjct: 195 TPGRVRDLFDRQFLKLDSIETIVLDEADEM-----------LNIGFKEEVTQIMDFVHGS 243 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEV-----RPVATQV 432 + QT+ SAT + E S + D + G R Sbjct: 244 VPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSK 303 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++++ + R +V TK D + + LH DI +R + + Sbjct: 304 TQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPI-FECQQLHGDIQQKQREQTLNGF 362 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R +F+VLV ++ GLD+ V L+ + K+ + GR AR G I Sbjct: 363 RENKFNVLVATDVAARGLDISGVDLIIMTHVPKD-----IPQYVHRAGRTARAGKEGTTI 417 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + I + ++ ++ I Sbjct: 418 TLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIA 451 >UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=C5S9J5_CHRVI Length = 683 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 95/296 (32%), Gaps = 30/296 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DY + V + + M+ + D R L + Sbjct: 182 TPGRLIDYYKQHVFDLKRIEVVVLDEADRMFDLGFIK---------------DIRYLFRQ 226 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 + SAT E + + + + + + ++ Sbjct: 227 MPPVEQRLGMLFSATLSYRVTELAYEHMNHPRLVKIETEQVTADRVRQVCYMTANEEKIP 286 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL IR + R++V TKR A+ + YL+ +G L D+ +R++++RD Sbjct: 287 LLLGLIRGW--PDGRIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFT 344 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VLVG ++ GL +P+V+ V D + IGR AR G A+ Sbjct: 345 NGTLPVLVGTDVAARGLHIPDVTHVVNYDLP-----EDPEDYVHRIGRTARAGAAGDAVS 399 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + I + + + + ++ D + Sbjct: 400 FVCETYAFCLLDIEQYIGIKVPVEPVDPALLAEVDPRSRIRPDRADREERRDGRDK 455 >UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMK6_ACIBL Length = 423 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 86/296 (29%), Gaps = 35/296 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DY+ + + + + + M + Sbjct: 153 TPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILR---------------- 196 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVD 433 QT+ SAT G + + V G + + P+ + D Sbjct: 197 -ALPRDKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKD 255 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + + LV TKR E L + L G +H D +R + Sbjct: 256 ALRQLLYE---QEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFD 312 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VLV ++ GLD+ +++ V D + I +GR R G A Sbjct: 313 KGSIKVLVATDVAARGLDVDDIAHVINFDLP-----QVPEDFIHRVGRTGRAGATGMATS 367 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + I T + + ++ N TP+ K + + Sbjct: 368 LVSGAEVFELRNIERTLKLKIARRDLNA--TTTPKREVKHRDTLSTRTLKRLPGEI 421 >UniRef50_A5BHG9 Putative uncharacterized protein n=2 Tax=Vitis vinifera RepID=A5BHG9_VITVI Length = 757 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 53/368 (14%), Positives = 107/368 (29%), Gaps = 35/368 (9%) Query: 238 IPRFTIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + + + P + ++ + + +L L + Sbjct: 295 VEQMDMPPPGARQTMLFSATFPNEIQILDHLEFYAAVRWNFHGELDALGELLHLLRDLRI 354 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + E E + RF + + V Sbjct: 355 SLEEDAVIWKGEGHGRFRIRDAYKLLSXSNVITFXKKSIWVDKVPTKVAFFAWEASWEKV 414 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG---------------NYE 400 + L G++LP+ + E + V A E Sbjct: 415 LTLDKLQRRGWQLPNRCFLCGCEEENVNHILLHCTVVRALWEIVLALFGANWVFPEKVKE 474 Query: 401 LEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDL--LSEIRQRA------AINER 448 + + + G D I++ D L ++ Q Sbjct: 475 IGLLRIFYANYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLLQSQMTNRTPKKYAL 534 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 LV TKR + L ++L +G +H D +ER ++ + G ++V ++ Sbjct: 535 TLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERAMKSFKSGATPIMVATDVAAR 594 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+P V+ V D ++ + IGR R +G A + + S+AK++ E Sbjct: 595 GLDIPHVAHVINFDLP-----KAIDDYVHRIGRTGRAGKSGLATAFFNDGNLSLAKSLVE 649 Query: 568 TERRREKQ 575 + ++ Sbjct: 650 LMQESNQE 657 >UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fusobacterium RepID=C3WG56_FUSMR Length = 988 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 73/433 (16%), Positives = 145/433 (33%), Gaps = 42/433 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + I+ A + + Q + E M Y Sbjct: 482 MDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTERMKN--YPIN 539 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 IE SR L+ + + + G+ +V +H + + + ++G Sbjct: 540 IELLSRLLTSKEQTQTLKKI----KEGGVDIVIGTHRILSEDVEFKDLRLVIIDEEQKFG 595 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIE 424 + L + ++ATP L + + D V T I Sbjct: 596 VKAKEKLKKL--------RSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPIN 647 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE---RVRYLHSDID 481 V ++ I + A +V + + E T+ L + ++ ++H + Sbjct: 648 TFFVEGLEKNIREIIMKEIAREGQVFYIFNSVKGIEKKTQELRKILPEYLKIDFVHGQMT 707 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E I++ GE D+LV ++ G+D+ + + I ADK G + + Q GR Sbjct: 708 PRDIKEKIKEFENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQ----IYQLRGR 763 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R Y +T + + RE+ K EE I GL + D+ G Sbjct: 764 VGRGNRQ---SYCYLLTKEYQ---TKKAKEREESIKNLEE--IDGGGLQLSMEDMRIRGA 815 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 I K G ++ + K LQ++I +++G + ++E + A Sbjct: 816 GEILGEKQHGILETF--------GYTLYMKMLQEEIDKIKGRFEEDIDDIEIKVNYPAFI 867 Query: 658 IRDQLHQLRELFI 670 + + + ++ + Sbjct: 868 PNEYIEKDEKIKV 880 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 27/194 (13%) Query: 52 VIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 ++ ++ + L + Y + + + N ++ + + + Sbjct: 15 LLKEIGGKILYLCSSNRNIEDYYNVLSDIYGGNILKLENTQSKDELEKDNYDLLEI---- 70 Query: 112 DASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA 171 + D +++ S+ AI + +G +D + Sbjct: 71 ------------------LKSEEDFIILLSLEAILREY---FLEGKRYEIEIGKSLDIKE 109 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL-FDEEVERLSLFDPL 230 + L E Y + +R + +RG+++DIFP S +R+E F+ EVER++ FD Sbjct: 110 LENSLEESGYNKEYMVEERNQYSMRGDILDIFPKNS-KYPVRIEFSFNNEVERIAYFDIE 168 Query: 231 TGQIVSTIPRFTIY 244 T + V + +Y Sbjct: 169 TQKSVEKKNQVYMY 182 >UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XVZ6_CAEEL Length = 504 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 58/391 (14%), Positives = 122/391 (31%), Gaps = 41/391 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P ++ ++ Q + +E+ + ++L + L +Q + ++ + Sbjct: 137 AFLLPALLHI--DAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSV 194 Query: 301 GYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G + + RG E P L D + + ++V + + M Sbjct: 195 CLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFE 254 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + D SAT + + + V+ Sbjct: 255 VAIRRI----LFEIRPDRL-------------VALTSATWPEGVRKLTDKYTKEAVMAVN 297 Query: 417 GLLD--------PIIEVRPVATQVDDLLSE---IRQRAAINERVLVTTLTKRMAEDLTEY 465 G LD E P ++ + + N ++++ +K MA+ L+ Sbjct: 298 GSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSD 357 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 G + LH +R + LR GE +LV +L G+D+P+++ V D Sbjct: 358 FCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPM 417 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + +GR R G+A+ + S + + + + E++ Sbjct: 418 D-----IEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDA 472 Query: 585 TPQGLN-KKVVDILALGQNIAKTKAKGRGKS 614 L + D K K S Sbjct: 473 EKYRLKCQSGRDGPRPSFRNNKNKNSNFQAS 503 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 103/363 (28%), Gaps = 28/363 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I T + + M E + + A + L+ Sbjct: 186 QTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGL 245 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + + + ++ P L D+ + + + + + M Sbjct: 246 NVMTFVGGMDFDKQLKQLEARF-CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 304 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + + VD Sbjct: 305 DMGFIPQVRQIIR---------------QTPHKGERQTLLFSATFTDDVMNLAKQWTVDP 349 Query: 412 VVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 + + +E A D + A N ERV+V K + E L Sbjct: 350 AIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERL 409 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G + D+ +R+ + R G+ VLV ++ G+ + +S V Sbjct: 410 TKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN-----F 464 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK-QQKYNEEHGI 584 + IGR R +G +I + + I E R+ + E Sbjct: 465 TLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPPAELLKP 524 Query: 585 TPQ 587 P+ Sbjct: 525 VPR 527 >UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI00003C8469 Length = 430 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 99/293 (33%), Gaps = 16/293 (5%) Query: 331 ADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V+ + + D + L E L + K F QT Sbjct: 113 PGSDIVIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQT 172 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQR 442 I +SAT + + + G + + V + L+S I Sbjct: 173 ILLSATLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDKFSTLMSYIHSY 232 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + + +V T+R + L L G +H + R I D R + +LV Sbjct: 233 NSR--KAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVA 290 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 N+ GLD+P ++ + DA S + +GR+ R +G+A+ D S+ Sbjct: 291 TNVAARGLDIPNITDIINFDAP-----DSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSL 345 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 ++I R + ++ + E T K + +N + RG+ Sbjct: 346 IQSIQRRNRIKMEKINIDLETEYTDINYGKLIAQFRDNEENAPEPDYHSRGRR 398 >UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX81_OSTLU Length = 754 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 93/333 (27%), Gaps = 31/333 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 ++ T+FD + ++ +H + Y+ R Sbjct: 282 LVTRHIQAAKQNTIFDDFRDGKVQIIVGTHKLVNLEQEYYKQLRLLVIDE-------EQR 334 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVAT 430 + + +SATP L + D + T + I Sbjct: 335 FGVKHKDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASLVQTPPPERRPINTVLAPQ 394 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRM----AEDLTEYLEEHGERVRYLHSDIDTVERM 486 DD+ I + N ++ M + L H +D Sbjct: 395 NDDDIRKAIEYEISRNGQIYYIVPRINMMRDACDRLLRLFPNLQIMTA--HGQMDGEAID 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G DVL+ ++ GLD+P + + I + G SL Q GR R Sbjct: 453 DAMESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLA----SLYQLRGRVGRAG 508 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 Y + + + R EE +G D+ G Sbjct: 509 RQ---AYAYMFYSADESELTTGAQERLAAL---EECCGLGEGFRLSERDMGIRGVGTMFG 562 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + D+V D+ + L +++ + Sbjct: 563 EKQSGDV-------DSVGADLYLELLYKQLQRI 588 Score = 52.1 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 74/225 (32%), Gaps = 23/225 (10%) Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE-------TLVEYGFRLPSALDNRPL 377 L+ + GL+ + + + R + +V Y RL + PL Sbjct: 125 LYRFCSPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPL 184 Query: 378 KFEEFEALAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 E + + TP E + D +D ++ + + Sbjct: 185 PDPERAKQFDASFPFTLTPDQTSAIQEITEDLQQD------APMDRLVIGDVGFGKTEVA 238 Query: 436 LSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + + A+ V + T K+ A +L G V + I ++ I D Sbjct: 239 MRAMFHVASSGGGVFMMAPTTVLAKQHAANLAVRFRPLGINVELVTRHIQAAKQNTIFDD 298 Query: 492 LRLGEFDVLVGINLLREGLD---MPEVSLVAILDADKEGFLRSER 533 R G+ ++VG + L L+ ++ L+ I + + G ++ Sbjct: 299 FRDGKVQIIVGTHKLVN-LEQEYYKQLRLLVIDEEQRFGVKHKDQ 342 >UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MT79_PHYIN Length = 564 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 89/286 (31%), Gaps = 34/286 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + V + + M + + Sbjct: 279 TPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPE----------- 327 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 Q SAT + + + D V G + I+EV + Sbjct: 328 ------RQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVVEDRARD 381 Query: 433 DDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + +++ A + R+L+ L K+ A+ + L + G +H D + +R E + Sbjct: 382 SRAHALLQKYHASRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRNQQQRSEAVEQ 441 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNGKA 550 + GE +L+ ++ GLD+P V V F + + I G A Sbjct: 442 FKSGEVPLLIATDVAARGLDIPGVEYVMNY-----SFPLTIEDYVHRIGRTGRGGKKGTA 496 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + A + RE Q+ ++ + KK + Sbjct: 497 HTFFTANDKPRAGELVNLL--RESNQEVPKDLTKFGTHVKKKEHKL 540 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 92/281 (32%), Gaps = 21/281 (7%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDN 374 G L +++ + + ++ + E L + Sbjct: 108 YGGVRIEPQIAQLQEGVDVLIATPGRLLDLYEQRALHFENLE-ILVFDEADRMLDLGFID 166 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-------P 427 + + + QT+ SAT + + ++ +++ Sbjct: 167 DVKRIQSLLPVKRQTLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIE 226 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 A + L+ I+Q + LV TKR A+ L LE+ G +H++ R + Sbjct: 227 QARKSAALIQLIQQHRWS--QTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQ 284 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + + GE VLV ++ G+D+ ++ V D + IGR R Sbjct: 285 ALNAFKAGEIQVLVATDIAARGIDVSQLPCVVNYDLP-----YVPEDYVHRIGRTGRAGN 339 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 G AI +P + ER ++ K + G P+ Sbjct: 340 TGTAIS---LFSPDEISQLQSLERYLDQHLKPSTLVGFAPK 377 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 72/425 (16%), Positives = 129/425 (30%), Gaps = 69/425 (16%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL+ L L + + + Q ++ P D + V Sbjct: 13 EEILKALKNLGFEKPSEVQQ-----------EVIPYILDKK--------DLV-------V 46 Query: 230 LTGQIVSTIPRFTIYPKTHYV-TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F I P V ++ + ELA + K + N L++ R Sbjct: 47 KSQTGSGKTASFGI-PLCELVNVEENKVKALILVPTRELAIQVKEDISNIGRLKKVRCAA 105 Query: 289 RT--QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q E + EL P + D++ L + D V I + Sbjct: 106 IFGKQPFNEQIRELKQ-----------RVHIVCGTPGRVIDHIERGNLDINDIDFVIIDE 154 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M L ++ + + T SAT Sbjct: 155 ADKM-----------------LNMGFIDQITDVLDKLPQSKNTALFSATIPKEIEGLYSN 197 Query: 407 DVVDQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQRAA-INERVLVTTLTKRMAED 461 + + V D I E + + ++ A +E ++ TK + Sbjct: 198 YMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDESAIIFCNTKDSVRN 257 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L+ L++ V+ LH D+D +R+ + + + EF VLV ++ G+ + ++ V Sbjct: 258 LSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAARGIHINHITNVFNY 317 Query: 522 DADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + E + S + IGR+ R G AI K I E ++ E Sbjct: 318 EVPIE-----KESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEYINYSIEEANLLE 372 Query: 581 EHGIT 585 I Sbjct: 373 YEEII 377 >UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Trichomonas vaginalis RepID=A2DVG1_TRIVA Length = 478 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 101/261 (38%), Gaps = 17/261 (6%) Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + + I + + K ++ E L + E+ Q Sbjct: 212 SHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQI 271 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVATQVDDLLSEIRQ 441 + SAT + D G+ ++V+ + + D LL +I Sbjct: 272 LLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLL-DIYG 330 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +I ++ ++ +K + ++E L++HG V +H+ +D +ER I+RD R G VL+ Sbjct: 331 SVSI-QKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTARVLI 389 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 +LL G+D+ +V+LV + + I IGR+ R G AI D + Sbjct: 390 STDLLARGIDVQQVTLVINFELP-----KKLEQYIHRIGRSGRYGRKGVAINICDHEDMN 444 Query: 561 MAKAIGETERRREKQQKYNEE 581 + + + + + E Sbjct: 445 VIEMLKNHYMTTINELPSDIE 465 >UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanosoma brucei RepID=O15919_9TRYP Length = 546 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 108/340 (31%), Gaps = 43/340 (12%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + P L D+L ++ + S + + + + Sbjct: 222 GGAPREAQARRLHNGCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQL 281 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGL 418 + F QT+ SAT + + + ++ V +G Sbjct: 282 DDILGYFS---------------SHRPAQTMMWSATWPPVVEQLAQEYLSQNRYVIRSGT 326 Query: 419 L-------DPIIEVRPVATQVDDLLSEIRQRAAINE------RVLVTTLTKRMAED---- 461 + I + A ++ + + + ++++ + E+ Sbjct: 327 AGTGLQVNENIKQHIFFADAPEERVKTLVSLIKEGKIDENTAKMMIFVERQTDTENAAYA 386 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L H + +H + +R I+ + G +LV ++ GLD P+V+ V L Sbjct: 387 LARMLGIHSRCIGVVHGGMQQRQRDHIMGIFKEGRIRILVATDVASRGLDFPDVTCVVNL 446 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR----REKQQ 576 A ++ S IGR R G++ + + S+AK + + ++ Sbjct: 447 IAP-----KNIDSYCHRIGRTGRAGRTGESFTFIGRSDGSLAKDLINYLEKCGMDVPQRL 501 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 E + + + Q +++++G + P Sbjct: 502 VEFAEEHAQGEEIKRMKRPWRGRQQREGRSQSRGGREPAP 541 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 16/270 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I I + ++ E L + Sbjct: 119 LRDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETK 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPVATQVDDLLSEIR 440 T SAT S + G ++ + V + + L I Sbjct: 179 HTYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI- 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A N+ ++ T+ +++ ++L ++G LH D+ +R +++ RL D+L Sbjct: 238 -DANPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDIL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ ++ V + GR R +G ++ Sbjct: 297 VATDVAARGLDVDSLTHVI-----HYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEES 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGL 589 K I + + ++K I + Sbjct: 352 RKLKQIKMSTKIDIVEKKVPTGDAIIKAQV 381 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 25/259 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAIN 446 + +SATP L + ++ + T ++V + I + Sbjct: 551 HVLSMSATPIPRTLHMALSELKEFSEIKTPPFGRKEVQVHIGPFDDRIVRIAILREINRG 610 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V+ D+ E L+E V + H E I G+ DVL+ Sbjct: 611 GQVIYVHNRVNTIYDVYERLKELLPEVSIVIGHGQQSKSELKRAIDMFFHGKADVLLCTT 670 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + DA + G + L Q GR R+ I + P K Sbjct: 671 IVENGVDVPNANTLIVDDAHRYGLAQ----LYQLRGRVGRSDK---ISFAYFFHP---KH 720 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNV 623 + + R K G GL + D+ G + + G +++ Sbjct: 721 VNDKVLERLYAIKSYVGPG---SGLKIAMRDMEIRGIGAVFGLEQHGY--------INDI 769 Query: 624 PMDMSPKALQQKIHELEGL 642 ++ + L + I E +G Sbjct: 770 GLNYYLELLDETIKESKGE 788 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 76/189 (40%), Gaps = 6/189 (3%) Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 + + Y+P D ++ + ++ R+ A ++ + + Sbjct: 3 LLSNEILIVPSEKETNIEGYYYIPDYDVLPYENLRPSWYVRSRRIYALYLAVQGKLKGIA 62 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIID-QRAILRRLAELQYARNDQAFQRGTFRVRGE 198 + ++ + P + K + HL G + + +L Y R + GTF +RGE Sbjct: 63 TLRALLHYVMKPSEFKKYIYHLKPGDELSSPEELFAKL---GYERVFNVREGGTFSIRGE 119 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 +ID D++ +R+EL+ +E + FD T + + + P +V + ++ Sbjct: 120 IIDYLGP--DNMPVRIELYGNLIEEIRRFDLKTQRSQEKLESALLLPAREFVVEEFKKIE 177 Query: 259 AMEEIKEEL 267 +E I E+L Sbjct: 178 KLEPIDEQL 186 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 107/301 (35%), Gaps = 11/301 (3%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-LEMMNEL 300 I K + ++ I Q I+EE VL E+ + + + +R + ++ Sbjct: 244 DILSKAQEIELKQPITQEKLLIEEEYIPSAPVLSEDELQVGDLVVHKRYGIARFTEIKKV 303 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFD----YLPADGLLVVDESHVTIPQIGGMYRGDRA 356 SG + + P D Y+ D + +D + + Sbjct: 304 ETISGAKEFLVLNFADSTLYVPIERIDLIDKYIGDDVNVKLD--SLKKGTWSKKVSKAKR 361 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 ET+V + +N ++ + E + V + + Sbjct: 362 NIETIVRDMLLIHYIRNNTTGVALPGDSELESEFAKTFPYIETEDQLKAIQDVFEDLVSG 421 Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGER 472 +D ++ + + + I + ++ + T ++ E++ E + G R Sbjct: 422 KPMDRLLVGDAGYGKTEVAIRAIFRAIVSGKQAALLAPTTVLARQHYENIAERFKPFGIR 481 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V L + ER EI+RD++ G+ D+L+G + + + ++ LV I + K G + E Sbjct: 482 VALLDRFVTKKEREEILRDVKNGKIDLLIGTHSILNNVVFADLGLVVIDEEQKFGVEQKE 541 Query: 533 R 533 + Sbjct: 542 K 542 >UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318E3 Length = 460 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 88/307 (28%), Gaps = 36/307 (11%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 M+ I+ ++L + L Q + + + + G R Sbjct: 62 MDRIEATDKRPSALVLAPTRELALQIVDETREIAHARALSITAVYGGVGLERQARNAARS 121 Query: 320 E----PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D L + + + + + M L Sbjct: 122 HILVATPGRLEDLLQRRAFTLANVKLLILDEADRM-----------------LDMGFRPA 164 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-------QVVRPTGLLDPIIEVRPV 428 + + QT+ SAT + D +D Sbjct: 165 VDRIVKATNANRQTMLFSATLKGEVDRIANEYTHDARRHELAPAPERVADIDHRFLPVLH 224 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 ++D L+ E+R LV TKR A+ L + L +H D +R Sbjct: 225 EHKLDHLVQELRHHG--RGLTLVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERA 282 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + GE DVLV ++ G+D+ VS V DA + IGR R Sbjct: 283 LSRFERGEVDVLVATDVAARGIDVNGVSHVINFDAP-----EDREGYVHRIGRTGRAGAT 337 Query: 548 GKAILYG 554 G + + Sbjct: 338 GIGVTFV 344 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 110/406 (27%), Gaps = 41/406 (10%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + P H +I R L + + + Sbjct: 43 AAAQTGTGKTASF-VLPLLHRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYL- 100 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 M G + + P L D + + S + + + Sbjct: 101 ---PLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEAD 157 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L E Q + SAT + + Sbjct: 158 RM-----------------LDMGFIEDINSIIEKLPEQRQNLLFSATLSKQVKALAKSAI 200 Query: 409 VDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + +D + + LLS + Q + L+ TK A Sbjct: 201 PDAIEIEISRKSAASTHIDQWLTTVDK-DKKSALLSHLIQEQNW-SQALIFIQTKHGAAK 258 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L LE+ G HS R +++ D + G+ LV + G+D+ ++ V Sbjct: 259 LVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDIDALARVINY 318 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D E I IGR R G+AI + K + + ERR E Sbjct: 319 DLPDE-----ADDYIHRIGRTGRAGNQGEAISFVSKDDF---RNLCAIERRLGHVIVRRE 370 Query: 581 EHGITPQGLN-KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 G P+ + ++D + + + K ++ P + Sbjct: 371 IAGFEPKKVVPISILDFVPKSASKTERKPNSPAETNLQSRPYSSGK 416 >UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetales RepID=PRP28_DEBHA Length = 580 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 84/265 (31%), Gaps = 26/265 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + T+ + M + + + S + + Sbjct: 294 TPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSIL-NYLPASEKLETTIDGK 352 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVAT------ 430 F T+ +AT + + ++ G + D I + Sbjct: 353 IFNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSD 412 Query: 431 ------QVDDLLSEIR--QRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDID 481 ++D L S +R + N +++ K+ E+L L G +H Sbjct: 413 EILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKS 472 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R I R G+ +L+ ++ G+D+P VSLV + I IGR Sbjct: 473 QEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQM-----TKKFDEYIHRIGR 527 Query: 542 AAR-NVNGKAILYGDKITPSMAKAI 565 R G + + D + + Sbjct: 528 TGRAGNKGTSCTFIDDGDSEVFLDL 552 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 75/278 (26%), Gaps = 13/278 (4%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+P + L L V + + R ++ E L Sbjct: 105 AGGQPIRPQLEALEKGAHLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFRED 164 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-----T 430 + QT+ SAT S V +++ V Sbjct: 165 MERILGAMPPRRQTVLFSATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPG 224 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 LL I + +V K +L + L G V L D++ ER ++ Sbjct: 225 DKQALLLRILRHY-QPASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMA 283 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R VL+ ++ G+D+ + V D + IGR R G Sbjct: 284 KFRNQSTRVLIATDVAGRGIDVEALDAVINFDLPM-----QAEPYVHRIGRTGRAGRAGL 338 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 A+ I + ++ P+ Sbjct: 339 AVSIVTPRDGRKVDDIQLATGVKLERGDVESLPSADPR 376 >UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya RepID=DBP5_YEAST Length = 482 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 66/380 (17%), Positives = 122/380 (32%), Gaps = 44/380 (11%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + F++ T ELA + +++ + Sbjct: 132 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 191 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 E + ++ + P T+ D + + + + Sbjct: 192 TSQLIVPDSFEKNKQ-------------INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 238 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + M L ++ ++ + F Q + SAT + + + Sbjct: 239 DEADNMLDQ----------------QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYA 282 Query: 405 GGDVVD----QVVRPTGLLDPIIEVR---PVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 V + ++ +D I ++ D+L+E+ I ++ TK+ Sbjct: 283 KKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSS-IIFVATKK 341 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A L L+ G V LH D+ T ER +I D R G VL+ N+L G+D+P VS+ Sbjct: 342 TANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 401 Query: 518 VAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKAILYGDKIT-----PSMAKAIGETER 570 V D + + I IGR R G AI + ++ K G+ E Sbjct: 402 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEM 461 Query: 571 RREKQQKYNEEHGITPQGLN 590 R ++E I + L Sbjct: 462 TRVPTDDWDEVEKIVKKVLK 481 >UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DPF6_ZYGRO Length = 557 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 47/342 (13%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + P + Q +E+ EEL E ++ + + + + + L Sbjct: 235 PLALILAPTRELAQQIEKEAEELIDAWGKNCEVASIVGGHSIEEISLQVSQGTDILVATP 294 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G L D L L + + + + M + T + Sbjct: 295 G------------------RLIDCLENHVLTLGKVETLVLDEADRMIDMGFEEQVTSILG 336 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT----GLLD 420 QT+ +A+ + + G + + V G Sbjct: 337 NLT-----------------QKRQTMMFTASMTPGTEKIAAGYLKNPVRVTVSGSQGSTP 379 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEYL-EEHGERVRYLHS 478 I ++ + I + +++ KR A+ L + +E +V L+ Sbjct: 380 MIRQLVEHIGSEEQRFQRIVEFLPQYRAPIIIFINYKRAADWLVQKFYKETQYKVTVLYG 439 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 +R + ++ LR G+ +++ N+ GLD+P+VSLV ++ + Sbjct: 440 SKSQEQREQSLQLLRKGKVQIMIATNVAARGLDVPDVSLVIN-----FQLSKTFEDYVHR 494 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 IGR R G AI + D P + K + + + N Sbjct: 495 IGRTGRAGHEGTAITFLDDEDPELVKELYKYLQENNPTGANN 536 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 53/363 (14%), Positives = 100/363 (27%), Gaps = 28/363 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I + + M E + + A + L + LT+ T Sbjct: 54 QTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRE-LVVQIAKDAAALTKYTG 112 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ P L D+ + + + + + M Sbjct: 113 LNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 172 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + + + Sbjct: 173 DMGFIPQVRQIIR---------------QTPPKSERQTLLFSATFTDDVMNLAKQWTTNP 217 Query: 412 VVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 + + +E A D + N ERV+V K + E L Sbjct: 218 AIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKL 277 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G L D+ +R+ + R G VLV ++ G+ + +S V Sbjct: 278 VRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVIN-----F 332 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK-QQKYNEEHGI 584 + IGR R +G +I + + AI R+ K + +E Sbjct: 333 TLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKP 392 Query: 585 TPQ 587 P+ Sbjct: 393 VPR 395 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/298 (16%), Positives = 88/298 (29%), Gaps = 14/298 (4%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +++ + + G R E L + Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAA 444 QT+ S S + V G +E + + Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241 Query: 445 IN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + +VLV T TK+ A+++ EYL G + LH D +R + I + VLV Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ ++ V + GR R G+AI + + Sbjct: 302 TDIASRGLDIEDLPYVINYELP-----GDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNK 356 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K I + + K + Y T + + K+ + + K R E Sbjct: 357 FKEIEKILKYTIKTEFYPGFE--TKEWVEKEAKKHTIQAKIDREKANKRPNGLRKKRE 412 >UniRef50_UPI0001906F62 transcription-repair coupling factor (TRCF) protein n=2 Tax=Rhizobium etli RepID=UPI0001906F62 Length = 322 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 103/321 (32%), Gaps = 48/321 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 RL + R + G + VRG ++D+F S++ +R++ F + +E + FDP Sbjct: 1 DDFAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEE-PVRLDFFGDTLESIRSFDP 59 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + + P + + I + + A R Sbjct: 60 ASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGAT-----------------TR 102 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 ++E G+E++ F + T+FDYL ++ + Sbjct: 103 DDALYLAVSEGRRYPGMEHWLPFFYEKL-----DTVFDYLSDFRVVTDHTVREAAEERSK 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + + ++ +AP +Y+ + L+ G V Sbjct: 158 LVLDYFDARLNSGQPSKGQMAQG-------TPYKPVAPGQLYLDSKLFAKTLDALGAIRV 210 Query: 410 DQVVRPTGLLDPIIEVRPVATQ------------------VDDLLSEIRQRAAINERVLV 451 G ++ + Q D ++ I R A +VLV Sbjct: 211 SPFNEIEGEARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADRRAGGAKVLV 270 Query: 452 TTLTKRMAEDLTEYLEEHGER 472 T T+ E L + L EHG Sbjct: 271 TAWTEGSLERLLQVLNEHGLE 291 >UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QAF6_MALGO Length = 885 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 98/325 (30%), Gaps = 33/325 (10%) Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 R L E + + +K QT+ SAT + + + Sbjct: 400 NMQRVTYLVLDEADRMFDLGFEPQVMKILGLIRPDRQTVLFSATFPKPMESLARKMLRHE 459 Query: 411 QVVRPTG-------LLDPIIEVRPVATQVDDLLSEI--RQRAAINERVLVTTLTKRMAED 461 + G + I+EVRP +++ LL + + R L+ + A++ Sbjct: 460 PLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLLEILGQLYHHDEDARTLIFVDRQDAADE 519 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L + G LH D +R + D + G +L ++ GLD+ ++ LV Sbjct: 520 LMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAGIVPILTATSVAARGLDVKQLKLVVNY 579 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + GR R G + + AK I R + Sbjct: 580 DVPNH-----LEDYVHRAGRTGRAGNQGTCVTFITPEQDRYAKDIVAALRASKAT--VPP 632 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 E + + + + GRG R S + L Q + Sbjct: 633 ELEALASQFK---EKLQQGKAHASGSGFGGRGLERLEA---------SRERLLQAQASIF 680 Query: 641 GLMMQHAQNLEFEEAAQIRDQLHQL 665 AA+ D+ +L Sbjct: 681 IEDEDADPE---AVAARAADETQRL 702 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 73/256 (28%), Gaps = 31/256 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + +L + + + + M L K Sbjct: 132 TPGRILQHLQEKTINFEHIKTLVLDEADRM-----------------LDMGFYEDIEKII 174 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 QT+ SAT + + + I ++ + + Sbjct: 175 AKMPKERQTLLFSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKE 234 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + V++ TK L L E G LH D++ + R E + Sbjct: 235 ATLEAFL-LNEMPKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFA 293 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +LV +L GLD+ +V +V + + IGR R GKAI Sbjct: 294 NGSAQILVATDLAARGLDIKDVEMVINYELP-----HTIEIYTHRIGRTGRMGKEGKAIS 348 Query: 553 YGDKITPSMAKAIGET 568 + S + Sbjct: 349 FVTPSEESFLHELERV 364 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 12/255 (4%) Query: 329 LPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +++ + G + L E L + Sbjct: 120 LEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEK 179 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-----VRPVATQVDDLLSEIRQR 442 Q + SAT + + V + E V PV + L Sbjct: 180 QILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIG 239 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + ++VLV T TK+ +++L + L+ G + ++ D R + + + G+ L+ Sbjct: 240 SRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIA 299 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ E+ V D + IGR R +G A+ + + Sbjct: 300 TDVAARGLDIQELEQVVNFDMP-----FKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYL 354 Query: 562 AKAIGETERRREKQQ 576 AI +R Q+ Sbjct: 355 LHAIENLLDQRLPQE 369 >UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMG6_9PAST Length = 449 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/365 (15%), Positives = 111/365 (30%), Gaps = 28/365 (7%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L+ D T T + + + + + + A + L ++ Sbjct: 68 SLAGKDIAGQAQTGTGKTMAFLTATFHHLLTHQSEKNTSQPRALILAPTREL--AVQINN 125 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + L + + G + + + DY+ + + V Sbjct: 126 DAELLSKATNLKTGLAYGGDGYEKQLKTIEKGVDILIGTTGRVIDYVKQGIICLDQIQVV 185 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M+ + + + A T+ SAT E Sbjct: 186 VLDEADRMFDLGFIKDIRYLLR---------------KCPAPEARLTMLFSATLSYKVRE 230 Query: 403 KSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAI-NERVLVTTLTKR 457 + D+ D L I E + D + + ER +V TK Sbjct: 231 LAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLLEEEWPERCIVFANTKH 290 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E++ YL G RV L D+ +R+ +++ G+ D+LV ++ GL + +V+ Sbjct: 291 RCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTH 350 Query: 518 VAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + IGR R +G +I + + AI Sbjct: 351 VFNYDLP-----DDCEDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIENYIAHSIPVS 405 Query: 577 KYNEE 581 +Y+ + Sbjct: 406 QYDAK 410 >UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilaginomycotina RepID=DBP3_USTMA Length = 585 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 93/284 (32%), Gaps = 33/284 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D L + +++ + + M + + Sbjct: 298 TPGRVLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDIRAI--------------IGMC 343 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 + T SAT + + V G ++ +EV Sbjct: 344 KSREEGRHTSMFSATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEVLADGYAK 403 Query: 433 DDLLSEIRQR---AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L++ + +++L+ L K+ A+ + + L G +V +H D+ ER+ + Sbjct: 404 ERRLNDFLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRGGFKVSGIHGDLGQNERIASL 463 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNG 548 + E +LV ++ GLD+P V V F + + I G Sbjct: 464 ERFKSAETPLLVATDVAARGLDIPNVEHVVNY-----TFPLTIEDYVHRIGRTGRGGKTG 518 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 K++ + ++ + A + + + QK + P + KK Sbjct: 519 KSLTFFTEMDKAHAGELIRVLK--DADQKVPDALTKFPTTIKKK 560 >UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein n=22 Tax=Actinomycetales RepID=D2AV63_STRRD Length = 571 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 11/257 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPL 377 G + L +VV I + T++ E Sbjct: 128 GMSMGRQIEALRRGVEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVS 187 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDD 434 + Q + SAT + + D V + + E + DD Sbjct: 188 AILQQTPADSQRLLFSATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVHRDD 247 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + A R ++ T+ + L + L + G + LH +R I+ + + Sbjct: 248 KFPVTAEIANREGRTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKE 307 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G +VLV ++ G+ + +SLV +D + +S + GR AR G+ Sbjct: 308 GAINVLVCTDVAARGIHVDNISLVLHVDPP-----QDHKSYLHRGGRTARA--GEKGTVM 360 Query: 555 DKITPSMAKAIGETERR 571 + P+ ++ RR Sbjct: 361 TLVLPNERRSTDAMTRR 377 >UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=3 Tax=Hydra magnipapillata RepID=UPI00019267D4 Length = 685 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 123/383 (32%), Gaps = 37/383 (9%) Query: 228 DPLTG-QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 D + + + P + + + LA R++ ++ + +E+ + Sbjct: 95 DVIVQARTGTGKTLAFTLPVIERLNSENLTERGRVPLVLALAPTRELAMQIYQEVEKFK- 153 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + E R G P + D + L + HV + + Sbjct: 154 --PNNVQVSCFYGGSSYEKQEGELRRGVDFLVGT-PGRIADLIQRGVLDLTKLKHVILDE 210 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M + LK A PQT+ SAT + + S Sbjct: 211 ADRMMDMGFQDDVEKI--------------LKHSYTSARKPQTLLFSATVPPWLQQNSKK 256 Query: 407 DV------VDQVVRPTGLLDPIIEVRPVA---TQVDDLLSEIRQ-RAAINERVLVTTLTK 456 + D + ++ + + + L+ +I Q + + ++ T TK Sbjct: 257 YLSSNLKVFDLIGEDKNKGATTVQHKVIKCSYWERPLLIKDIMQLYSGKFGKTIIFTTTK 316 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + A +L+ +E + LH DI +R ++ R G+F+ L+ ++ GLD+PEV Sbjct: 317 QEANELS--VESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAARGLDIPEVD 374 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 LV + + I GR R G +++ S A+ + ++ Sbjct: 375 LVIQTEPPND-----IDFYIHRAGRTGRAGRSGVCVVFYKPGQESEIAAVEKRTGVTFEK 429 Query: 576 QKYNEEHGITPQGLNKKVVDILA 598 I + + + Sbjct: 430 ITPPNPEEIVSSCADDAIRSLEK 452 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 107/339 (31%), Gaps = 38/339 (11%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + G + + + E L + + + Sbjct: 119 LKQKSHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENI 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIR 440 + SAT G + + V ++ + + + L + Sbjct: 179 TIMLFSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLY 238 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + N ++ T+ M E L L++ LH ID +R+ I D R G F L Sbjct: 239 KNNPTN--AMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ G+D +++ V D S+ + + IGR R +GKAI + + Sbjct: 297 IATDVAARGVDFDDITHVINYDLPM-----SKETYVHRIGRTGRNGKSGKAISFIREEEK 351 Query: 560 SMAKAI---------------GETERRREKQQKYNE-------EHGITPQGLNKKVVDIL 597 M I E R ++K+NE K ++ + Sbjct: 352 KMLSLIEKFTGTPIEIVTPPSEEEVREFLYKEKFNEAQQKKQERKKKKGDVFQKDIMKLT 411 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 G +K + + +E N D+ ++ I Sbjct: 412 ISGGRKSKLRTCEVVGTISGIEGVNGKEDIGVIDIRDSI 450 >UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2E9Y0_TRIVA Length = 536 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 109/357 (30%), Gaps = 31/357 (8%) Query: 223 RLSLFDPL--TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + +D + + + I P +Y+ ++ L+ E Sbjct: 174 SIDSYDIIGLSQPGTGKTLAYVI-PLLYYILEYKKNHPETNNFSIPLSVVLVPTHELAVQ 232 Query: 281 LEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++E + + P L D + A + V Sbjct: 233 VQEVIDKLGINLGIKSRTLTGSFRLNDQALELSHENHVIVATPGRLKDAIEAHLVSVKKV 292 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + + + + SAT + Sbjct: 293 FFIVMDEADKMVDKSLGPQISFILN-----------------ECPKEKHLMMFSATMPHE 335 Query: 400 ELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 L V G + + I +V Q D L ++ + ++V T T Sbjct: 336 VLSIVEEFFTKVVTVSVGEIGGASENIKQVVHYCRQADRLGLLLKSLRGMKAPIIVFTNT 395 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + E ++ +G R ++H ER I+ ++ FDVLV +++ G+D+P V Sbjct: 396 RDSCEKSAMEIQNNGFRSAFIHGGKSQKERDSIVEGIQNNLFDVLVATDVISRGIDIPNV 455 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V L+ R+ + + IGR RN G A + K + + RR Sbjct: 456 ENVVNLELP-----RNIHTYVHRIGRTGRNGKEGIATSFVTKDDKEIMYDLAAMLRR 507 >UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C1LZ65_SCHMA Length = 840 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 80/242 (33%), Gaps = 30/242 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + +++ + M+ + + R Sbjct: 427 TPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRP------------ 474 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 QT+ SAT + ++D V G L +E+ Q Sbjct: 475 -----DRQTLLFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKW 529 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D L+ R VL+ K +E++ + L+ +V +H D+ +R +I+ + Sbjct: 530 DWLTRNLVRLTTEGSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFK 589 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 E +LV ++ GLD+P + V + R + IGR R G A Sbjct: 590 RQEAPILVATDVASRGLDIPSIHNVINYEV-----ARDIDTHTHRIGRTGRAGAKGTAYT 644 Query: 553 YG 554 Sbjct: 645 LF 646 >UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Saccharomycetales RepID=PRP28_LODEL Length = 597 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 19/281 (6%) Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 I+N P L D + L ++ + + M + + Sbjct: 307 MDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKL 366 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----- 417 L + F T+ +AT + + ++D G Sbjct: 367 INLLPKNEKLSTTIDG-KLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEA 425 Query: 418 --LLDPIIEVRPVATQVDDLLSEIR-----QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 +D + + L I+ +R N V++ K + + L+ LE++ Sbjct: 426 LDNIDQHFDYLSTYAESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNN 485 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H R E + D R + +LV ++ G+D+P VSLV + Sbjct: 486 LLNVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSLVINYQM-----SK 540 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 I IGR R N G++ + D + + + Sbjct: 541 KFDEYIHRIGRTGRAGNLGESYTFLDDADAETFMPLKKFLK 581 >UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D232_PARTE Length = 434 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 113/321 (35%), Gaps = 23/321 (7%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 R +++ + + + +++ +G IE + G + Sbjct: 117 RIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAF-----CCIGGTSTQETREKC 171 Query: 330 PADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +++ I + Y R + E L + + + Q Sbjct: 172 KQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQ 231 Query: 389 TIYVSATPGNYELEKSGGDVVD---------QVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 SAT +E S + D + + G+ I ++ + L+ Sbjct: 232 IALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLVELY 291 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + ++ +K+ +DL + L G V +HS ++ ER +++++ + G + Sbjct: 292 KNLTVS--QSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARI 349 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV +L+ G+D+ ++SLV + F R + I +GRA R G AI + Sbjct: 350 LVSTDLMGRGIDVQQLSLVINYE-----FPRLKEQYIHRVGRAGRYGRKGVAINMVAQQE 404 Query: 559 PSMAKAIGETERRREKQQKYN 579 ++ + + + + + Sbjct: 405 ANLLLEVEKYYNTKIDEMPKD 425 >UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Borrelia RepID=MFD_BORBU Length = 1125 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 23/274 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 ++ + +SATP L S + D V + + + + + L+ I Sbjct: 728 RISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLIKHAIESE 787 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + +V + L +E R+ +H + E I+ + + +L Sbjct: 788 LSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTGEEIENIMHNFIKKAYQIL 847 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + ++ G+D+P + + I +A+K G + L Q GR R G Y + Sbjct: 848 LATTIIENGIDIPNANTIIINNANKFGLAQ----LYQLKGRVGR---GSQKAYAYFLYQD 900 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVE 619 K R ++ + E G + D+ G N+ + G E Sbjct: 901 SEKL----NERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHG--------E 948 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 +++ +D L + I + G + + ++ + Sbjct: 949 IESIGLDYYLTMLNKAIEKKMGKISSDEEEVDIK 982 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 62/462 (13%), Positives = 142/462 (30%), Gaps = 66/462 (14%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-RPTMVLAPNKTL 69 +++++E LE + +L G G K F I + + +++ ++ Sbjct: 7 LTTILKNNSNLKKMKEFLEQNI-FFSLTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHT 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 ++ +++ + + S + K I R+ Sbjct: 66 LDKIKNDLQVITNQIFELNYFSP---------------LVYKGIGSKSTIFNERIKFLFN 110 Query: 130 MLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ + + + ++ + LK + + I+ I + L L Y + + Sbjct: 111 FYKKNPGIYITVLKSLLSKIPDKNTLLKNIYKIEKNTNINTADIEKTLITLGYEKTLRVT 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKT 247 G F V+GE+IDI+P + +R+ L +++E + F+PLT + + I F I PK Sbjct: 171 IPGEFTVKGEIIDIYPFG-EQNPIRIALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKK 229 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + I +I K +E +++ + F E E + Sbjct: 230 EIIWDDKTINTLKTKI---------------KSVEYKKILEELDFKKETKTEEMFYP--- 271 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L D + +V E + +I +++ + E G Sbjct: 272 -----------LVANTYLGDEIEKHTPIVNFEINNFEKEIEKIHQEYEKLYKEAEEAGKN 320 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + + +E I R Sbjct: 321 IIDPKRILLNYKTFNLKSDVLFSKIKSLKSKETIEF-----------------KIESERN 363 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + E ++++ ++ E L +E Sbjct: 364 FFSNIALTKEEFENWLKNGFKIIIAAESESQKEKLKYIFKEL 405 Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 96/288 (33%), Gaps = 17/288 (5%) Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 +A++ E V + + + Q +T + E+ Y G + + Sbjct: 446 ESSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKRIKTSSLEKDYIEIEYAEGEKLFIPI 505 Query: 313 LSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 E + Y+ +D + + S T + + + + Sbjct: 506 -------EQTNLIQKYIGSDPKNIKLDKISSKTWIKNKANAKKRIEEIADKLIELYSKRE 558 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 ++ + L ++ + + + + + ++D ++ Sbjct: 559 SIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKE---IKEDMMSFKVMDRLLCGDVGFG 615 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAED----LTEYLEEHGERVRYLHSDIDTVERM 486 + + + + N++V+V + T +AE + + ++ L I Sbjct: 616 KTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAES 675 Query: 487 EIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 I+++L+ G+ D+++G + +L + + L+ I + + G E+ Sbjct: 676 RILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKEKEK 723 >UniRef50_UPI000190E2D1 ATP-dependent RNA helicase DbpA n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190E2D1 Length = 299 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 98/290 (33%), Gaps = 21/290 (7%) Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--PIIEV 425 + + + F QT+ SAT SG + +D P IE Sbjct: 1 MDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQ 60 Query: 426 RPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + T + +S ++ + ++ +V TK+ + + + L G+ LH D++ Sbjct: 61 QFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQR 120 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + G +LV ++ GLD+ + LV + + IGR A Sbjct: 121 DRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYE-----LAWDPEVHVHRIGRTA 175 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP-----------QGLNK 591 R +G AI + A + E + + + P G Sbjct: 176 RAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLAAEMATLCIDGGKKA 235 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 K+ LG G + V P +V + + Q+ +L+ Sbjct: 236 KMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQN 285 >UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EYB1_DICNV Length = 432 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 92/318 (28%), Gaps = 33/318 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + + + + M+ + + Sbjct: 140 TPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLR---------------Q 184 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 A + SAT E + V + + Sbjct: 185 MPPAYERLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTP 244 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + ER ++ TK E L+ L +G L D+ +R +IIRD + Sbjct: 245 LLLGLFARE--RPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQ 302 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +++V ++ G+ + ++ V D + + IGR AR +G AI Sbjct: 303 EGTVNIVVATDVAARGIHIDGITHVFNYDLP-----QIAEDYVHRIGRTARAGASGTAIS 357 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + ++ E E ++ + + L +N +++ + Sbjct: 358 FA---CEEYVYSLPEIEHFLGEKIPVKPIEESLIVDVIPPSDEALDALRNEKESRIRIHN 414 Query: 613 KSRPIVEPDNVPMDMSPK 630 + ++ K Sbjct: 415 RGNRKPMTKSIRRRRYQK 432 >UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DSB9_ZYGRO Length = 491 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 65/381 (17%), Positives = 128/381 (33%), Gaps = 45/381 (11%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + F++ T E ELA + +++ + Sbjct: 140 RNMIAQSQSGTGKTAAFSLAMLTRVNPELGEATQAICLAPSRELARQTLEVIQEMGKFAK 199 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 E ++ + P T+ D + + + Sbjct: 200 ISTQLIVPEAFEKGQQIKA-------------QVVVGTPGTVLDLIRRKLINLSQVKIFV 246 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + M L ++ ++ ++F + Q + SAT + E Sbjct: 247 LDEADNMLDK----------------QGLGDQCIRVKKFLPKSTQLVLFSATFPDQVKEY 290 Query: 404 SGGDVVD----QVVRPTGLLDPIIEVR---PVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + V D ++ R + I ++ + ++L+E+ I ++ TK Sbjct: 291 AKRVVPDANSLELQRNEVNVSAIKQLYMDCNDESHKYEVLTELYGLLTIGSS-IIFVSTK 349 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + A L L++ G +V LH D+ + ER +I D R G VL+ N+L G+D+P VS Sbjct: 350 KTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLARGIDIPTVS 409 Query: 517 LVAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKAILYG-----DKITPSMAKAIGETE 569 +V D + + + +GR R G AI + +I S+ K + E Sbjct: 410 MVVNYDLPTTQTGQPDPSTYVHRVGRTGRFGRKGVAISFVHDKKSYQILSSIQKYFQDVE 469 Query: 570 RRREKQQKYNEEHGITPQGLN 590 R +++ I + L Sbjct: 470 MTRVPTDDWDKVEKIVKKVLK 490 >UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Ustilago maydis 521 RepID=UPI00003C10F6 Length = 594 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 10/234 (4%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + G + R + G P + D L + + I Sbjct: 208 ILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRD-LQRGAEICIATPGRLID 266 Query: 346 QIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + G R + E L + + K + QT+ SAT + Sbjct: 267 MVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFSATWPKEVQRLA 326 Query: 405 GGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 G + + G + IIEV + L+ + +A N +V++ T TK Sbjct: 327 GDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAENGKVIIFTSTK 386 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 R+A+DLT++L + G +H D ER ++ + + G ++V + GL Sbjct: 387 RVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAVASRGL 440 >UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LY29_9ALVE Length = 367 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 15/271 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L ++V + + + + + E L ++ K + Sbjct: 76 LSKKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRD 135 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQVDDLLSEIRQ 441 QT SAT N + + V + V + Sbjct: 136 RQTFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALL 195 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 V++ T A+ + L G LH + R+ + R G +LV Sbjct: 196 AHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSILV 255 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+P V +V D ++ I +GR AR G+++ + Sbjct: 256 ATDVAARGLDIPSVDVVINFDVP-----KNPEEYIHRVGRTARAGRTGRSVTLVTQYDIE 310 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + I + ++ +++ E + P + Sbjct: 311 PFQRIENKQGKKM--EEFPEVNEEAPCRYKR 339 >UniRef50_Q7PH63 AGAP003663-PA (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7PH63_ANOGA Length = 746 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 7/145 (4%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL E+ ++L+ T TKR + ++ ++ +G +H D ER + R Sbjct: 605 KLLEELYHE-GNPGKILIFTTTKRQCDRISMQIKRYGYDSVSMHGDKSQQERERALGRFR 663 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 +LV ++ GLD+ + +V D + + + IGR R+ G A Sbjct: 664 NSSSCILVATDVAARGLDVDGIKVVINYD-----YPQQTEDYVHRIGRTGRSNATGVAYT 718 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + A+ + + ++ Sbjct: 719 FFTMAERKQARELVNILQEAKQDIP 743 >UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids RepID=A5C4J0_VITVI Length = 786 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 70/429 (16%), Positives = 122/429 (28%), Gaps = 72/429 (16%) Query: 225 SLFDPLTGQIVS---TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 L + L + ++ I R + P R + K L E+++ Sbjct: 126 RLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDDEKR 185 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYS----RFL--SGRGPGEPPPTLFDYLPADGLL 335 QR + R L + +E +L G T + L + Sbjct: 186 TSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYITQQNALSRGVDV 245 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV I I G + + L E L + E Q++ SA Sbjct: 246 VVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSA 305 Query: 395 TPGNYELEKSGGDVVDQVVRPTG------------LLDPIIEVRPVATQVDDLLSEIRQR 442 T + + + + + + G +P + V + L I+ Sbjct: 306 TMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLAEGIKLY 365 Query: 443 A----------------------------------AINERVLVTTLTKRMAEDLTEYLEE 468 A A + +V T TKR A++++ L Sbjct: 366 AIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKRDADEVSMALTN 425 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL---------VA 519 LH DI +R + R G+F VLV ++ GLD+P V L + Sbjct: 426 S-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDLLFLQII 484 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + + + GR R G AIL K++ + + Sbjct: 485 HYELPND-----PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISP 539 Query: 579 NEEHGITPQ 587 + Sbjct: 540 PAIEEVLES 548 >UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmodium RepID=Q8I457_PLAF7 Length = 755 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 109/372 (29%), Gaps = 38/372 (10%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + ++Q F++ + + EN R P + D++ L + + +V Sbjct: 277 FKEISQFYNFNIMSIYGGESYTYQENKLR-KGIDILTGTPGRIIDHIEKKNLSLQNIKYV 335 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M + L A Q + SAT ++ + Sbjct: 336 VLDEADEMLNLGFTHDIERILSNINLKEA----------------QVLLYSATTPSWIKD 379 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVA---------TQVDDLLSEIRQRAAINERVLVTT 453 S + + + LL +I + +V++ T Sbjct: 380 ISSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFT 439 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK A+ L LH +I R ++ R G F +L+ ++ GLD+ Sbjct: 440 RTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDIS 499 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 V LV I GR R N G +++ I + + Sbjct: 500 NVDLVIQCFPPNY-----SAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIK 554 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIA------KTKAKGRGKSRPIVEPDNVPMD 626 + + + + + I + + S I + + + Sbjct: 555 FNMETLPNNEQVFHCASAIASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIELISRC 614 Query: 627 MSPKALQQKIHE 638 ++ A ++ I + Sbjct: 615 LAIIAKKEHIKK 626 >UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S107_OSTLU Length = 478 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 89/311 (28%), Gaps = 16/311 (5%) Query: 325 LFDYLPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 F L A +VV + + R L E L + + Sbjct: 173 QFKKLRAGAEIVVATPGRLVDVLCMKNSTNLRRVTYLALDEADRMLDMGFEKIVRSICQA 232 Query: 383 EALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLL----DPIIEVRPVATQVDDLLS 437 Q + SAT + + D V G + + + +V V + Sbjct: 233 VRPDRQCVMFSATMPAAMQRLARDVLARDAVTVSIGNVGGANEDVRQVVYVFEDDARRAA 292 Query: 438 EIRQRAAI---NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + +V K E+L L G + LH D+D +R ++ + Sbjct: 293 WLFENLGDAVDEGQAIVFVNHKSSVEELVNELATRGIKAVALHGDLDQAQRQFAMKAFKS 352 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 VLV ++ GLD+ + V R + + IGR R Y Sbjct: 353 EHAHVLVATDVAARGLDVEAIKTVVN-----FHPARDMSTHVHRIGRTGRAGALDGRAYT 407 Query: 555 DKITPSMAKAIGETERRREKQ-QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 AK + E+ E Q + +G K G K GRG Sbjct: 408 LFTARDSAKFAQQLEQNLEAAGQPVPLDLKALARGTYNKRPRSDHGGDAPRHGKVGGRGL 467 Query: 614 SRPIVEPDNVP 624 + Sbjct: 468 GFTSHHRPSAG 478 >UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XNZ2_9HELI Length = 1011 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 32/291 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAIN 446 + +SATP L + + T + V D LL EI + Sbjct: 645 HLLSMSATPIPRTLNMALSHIKGLSELKTPPSERQATRTFVKQLDDTLLKEIIMREMRRG 704 Query: 447 ERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++ + ++ E++ L ++ LHS I E +I+ + G + +L+ Sbjct: 705 GQMFYIHNSIATIRQKKEEILRVLPT--LKIAILHSQIPAQEAEDIVLEFAKGTYQILLC 762 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 +++ G+ +P + + + +A+ G L Q GR R + + Sbjct: 763 TSIVESGIHLPNANTILVDNANYFGIA----DLHQLRGRVGRGNKEG---FCYLLIED-F 814 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 ++I E ++R + N G D+ G +A+ N Sbjct: 815 ESITEDAKKRLLALEKNSFLGSGGA---LAYHDLEIRGGGNLLGEAQSG-------HIKN 864 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQIRDQLHQLR 666 + + + L+ I L G + Q N+E F A I + +L Sbjct: 865 IGYSLYLRMLEDAIFALSGNVAQKEANVEVKLSVTAFLNAELIESERLRLE 915 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 22/214 (10%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++L + A G++ +F P D + Sbjct: 24 LIILCEDGRSALS-CGDVAKFLG--------------FKTFVFPDFRAAFGDDLRSYQEE 68 Query: 120 EQMRLSATKAMLERRD-VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLA 177 + + ++ + + + + L + L VG +++ ++ L Sbjct: 69 LSALFWTLREFYTFKGEKILFSPLYTLLHPLPNAESLL--TMQLKVGDVLNLKSFKENLL 126 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ-IVS 236 Y D G +RG++IDI ++ R+ LFD+E+E + FD T Sbjct: 127 YFGYEFVDLVELGGEVSMRGDIIDILTP-NEQNPYRITLFDDEIESVRYFDSQTQLCSKE 185 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 + I P E E I L + Sbjct: 186 NLDSLEIPPA-FLSLNAESYENLKEAILAILQKQ 218 >UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteobacteria RepID=Q30YG9_DESDG Length = 530 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 27/254 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + M+ + + Sbjct: 185 CPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILH---------------- 228 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR----PVATQVDDLL 436 + QT+ SAT E + + V VR PV + L Sbjct: 229 -CTRVRKQTMLFSATMPAPLRELAEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKTPL 287 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + RA + VLV T+ A L + L + G L ++ R + R G Sbjct: 288 LKYVLRAFARDSVLVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGT 347 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 F V+V ++ G+D+ +V V D F S + + GR R + +G A+ + Sbjct: 348 FRVMVATDIAARGIDVSQVGYVINYD-----FPPSVEACVHRAGRTGRASNSGVALTFVT 402 Query: 556 KITPSMAKAIGETE 569 + + + Sbjct: 403 QEDEPQVRTLERVL 416 >UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=A6VVZ5_MARMS Length = 448 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 64/390 (16%), Positives = 120/390 (30%), Gaps = 36/390 (9%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P H V ++ + + + + R ++ + RL ++ + Sbjct: 54 AYLLPALHRVYKKKALSKRDPRVVILVPTRELA----KQVFGQLRLLLAASRFTSILIQG 109 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G ++ S P L D+L + + + + + M A Sbjct: 110 GENFNDQHKSLQKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMR 169 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN-YELEKSGGDVVDQVVRPTG-- 417 + QT++ SAT N E +G + + G Sbjct: 170 AIN----------------SAASHRQRQTLFFSATLDNTEISEIAGELLREPSRVAIGQG 213 Query: 418 -----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + + + + LL + I ++ +V T TK L+E + G Sbjct: 214 FDEHTDISQHVLLCDHLDHKEALLKHLLVGQTI-KQAIVFTATKSDTVRLSEIIAGWGLS 272 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + L+ ++ R + + G+FDVLV ++ GLD+ VS V D + Sbjct: 273 TQALNGNLSQSARNKTMESFAKGQFDVLVSTDVASRGLDIASVSHVFNFDLP-----KQA 327 Query: 533 RSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNE-EHGITPQGLN 590 + GR R G A KAI ++ + E Sbjct: 328 EEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKAIEVFLQKTFTTESIEGLEAKFKGLLPP 387 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K G A TKA + +P+ + Sbjct: 388 KPARQETKKGSTKAPTKASKKTNKKPVGKA 417 >UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6I0_SALRD Length = 478 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 119/426 (27%), Gaps = 36/426 (8%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + L E ++L + + E ++ + Sbjct: 79 RDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPR 138 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYG 365 N + G G D L +V+ + I + R L E Sbjct: 139 TNRMEAVLIYG-GVGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEAD 197 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 L E + SAT + + D +E Sbjct: 198 EMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEE 257 Query: 426 RPVAT------QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 D +++++ E L+ TKR L ++L G + + D Sbjct: 258 NEYRYYLVNPMDKDRVMAQLL-ELEEPESALIFANTKREVSYLNKFLSNKGYDIDEMSGD 316 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + +R E + LR G+ +LV ++ G+D+ ++S V I D + +I Sbjct: 317 LSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVP-----QDHEYIIHRS 371 Query: 540 GRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR AR G I+ K + T ++ + + + L + Sbjct: 372 GRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEAREL------LQE 425 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 N E + + + EL + ++ E A+ Sbjct: 426 RYAN---------------AEAPANGEEPGVEDFVPLVKELSDEQPELLASIITELYAEA 470 Query: 659 RDQLHQ 664 + + + Sbjct: 471 KTEDEE 476 >UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B6HEA9_PENCW Length = 692 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 106/371 (28%), Gaps = 16/371 (4%) Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + + A R + + + T+ + + + R Sbjct: 208 ARKLAAPRPNTAERFNPREDAVRAEPLVLIVCPTRELATQIFDEARRLCYRSMLRP-CVA 266 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDN 374 G P + L +++ + + R R + E L S + Sbjct: 267 YGGAPSRQQREELQKGCDILIATPGRLLDFMAQTHVLSLRRVRYTVIDEADEMLESDWEE 326 Query: 375 RPLKFEE----FEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEVR 426 K E + + SAT + + + + VR G + Sbjct: 327 EFKKIMSGGDVNEDADHRYMMFSATFNKEFRKLAKQYLNENHVRLRVGRAGSSHHNVVQD 386 Query: 427 PVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + R L+ +K + + +YL G +H E Sbjct: 387 IIWADQPKKMRALYDLLISMPPVRTLIFVNSKEQVDFVDDYLFNSGMPTTSIHGGRTQRE 446 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + +R R + ++V + GLD+ V V D + IGR AR Sbjct: 447 REDAMRAFRTAKCPIMVATGVSARGLDVVNVLHVINYDLPS-AIHGGITEYVHRIGRTAR 505 Query: 545 -NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G A + + +A+ + + ++ P+G + D Sbjct: 506 IGNEGIATSFYNDRDEGIAEDLVKILIECDQAIPEF-LQQYRPEGDVLEFDDDSDKEFFD 564 Query: 604 AKTKAKGRGKS 614 ++ A ++ Sbjct: 565 NQSNAGAEAEA 575 >UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=B7RTE5_9GAMM Length = 440 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 97/318 (30%), Gaps = 27/318 (8%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAP 387 L + L++ + + + ++ E L + +K F Sbjct: 119 LRKNPELIIATPGRLLEHCEKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAER 178 Query: 388 QTIYVSATPGNYELE-KSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEI 439 Q I +SAT + L + + D + D LL + Sbjct: 179 QVIMLSATLKHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCAL 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + R LV + A+ L L HG R LH ++ T ER ++ R + D+ Sbjct: 239 MDKGGFT-RALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDM 297 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 + ++ GLD+ ++ LV D ++G + GR R G AI + Sbjct: 298 VCASDVAARGLDVKDIDLVVNYDLPQKG-----DDYLHRTGRTGRAGATGLAISLVSGLE 352 Query: 559 PSMAKAIGETERRREKQQKYN-----------EEHGITPQGLNKKVVDILALGQNIAKTK 607 ++ +I +++ + G KK A Sbjct: 353 WNLMVSIQRYLNLEFEKRSLPGLKARYSGPKKTKGSGKSAGTKKKRSKSTADKSKTRARN 412 Query: 608 AKGRGKSRPIVEPDNVPM 625 K +GK + Sbjct: 413 QKSKGKPGSGKTVSSDGF 430 >UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V8Y7_MONBE Length = 543 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/319 (15%), Positives = 100/319 (31%), Gaps = 25/319 (7%) Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLK-FEEFEAL 385 + A ++V + + + R + E + + + + Sbjct: 221 CMRARPDILVATPMRLVHALQHKLVDLSAVRWLVVDEADRLFENGFEQQIDEVIAACSHK 280 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVR-PVATQVDDLLSEIRQ 441 + SAT + + D V G + +E + ++ IRQ Sbjct: 281 KRRIALFSATMPERVETLAQTVLHDYVRIVVGAANAANQDVEQELKFVGSEEGKMTAIRQ 340 Query: 442 RAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + VL+ +K A+ L E L V +H+D +R E+++ R G+ V Sbjct: 341 MLQTGLQPPVLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQQRDEVVKRFREGQVWV 400 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ +L+ G+D V++V D F + I +GR R G+A+ + Sbjct: 401 LICTDLMGRGVDFKAVNVVINYD-----FPPNATEYIHRVGRTGRAGHRGRAVTFFTVDD 455 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA---------LGQNIAKTKAK 609 M + I + + E + ++ I + + Sbjct: 456 RPMLRNIANVVK--ASGSEVPEWMLKLKKTEKQRSRQIERAPVSSNPNVQAADKKTKAKR 513 Query: 610 GRGKSRPIVEPDNVPMDMS 628 + S P S Sbjct: 514 AQKASDAGAAPPKKGKHRS 532 >UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5M7_9FIRM Length = 426 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 51/324 (15%), Positives = 96/324 (29%), Gaps = 43/324 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ L + + V + + M + + Sbjct: 127 TPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLG---------------- 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVD 433 A Q SAT + + + + ++ ++ ++D Sbjct: 171 -AAAQDYQLALFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLD 229 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + I + A +V TK L L + G V L D+ +R ++R R Sbjct: 230 RLCASINEEA--PYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFR 287 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 + +L ++ GLD+ V+ V D + I IGR R GKAI Sbjct: 288 SAKLQILCATDIAARGLDIEGVTHVYNYDLPP-----TVTDYIHRIGRTGRAGTQGKAIT 342 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + + ++ + KK G+ A+ KA Sbjct: 343 LVAPHQHEKLRKMEAALKACLRR-----------DVVKKKKRPAPPAGEGDAQKKAHPPR 391 Query: 613 KSRPIVEPDNVPMDMSPKALQQKI 636 ++ P K + + Sbjct: 392 DAKRRALPKRTKSKPRSKKAGKTV 415 >UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteria RepID=Q7MC00_VIBVY Length = 436 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 92/320 (28%), Gaps = 18/320 (5%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 G L + ++V + + L E L Sbjct: 124 CLCGGVDKEQQLQALATNPHILVATTGRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWP 183 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRP 427 + QT SAT + K+ + + + + Sbjct: 184 DVQNIAAQTSSQRQTAMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVN 243 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ L+ I++ A + LV K A+ L + L + G LH D ER E Sbjct: 244 KGSKTKALIELIQKNAWT--QALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREE 301 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + + G+ VL+ +LL G+ + ++ +V + + + +GR AR Sbjct: 302 ALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPMH-----AETYVHRVGRTARAGE 356 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQK---YNEEHGITPQGLNKKVVDILALGQNI 603 G A+ AI +R Q + + + D A + Sbjct: 357 QGVALSLVCHGEMDALSAIRHLTQRELPVQDLEGFPVTDKPSTGESKRAPRDKKANRRTQ 416 Query: 604 AKTKAKGRGKSRPIVEPDNV 623 K K P + Sbjct: 417 NKKSVKQFQSKAKRPAPKSK 436 >UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EED4_9EURY Length = 435 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/368 (13%), Positives = 116/368 (31%), Gaps = 24/368 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + T+ + E+ G + ++ G + + + ++ Sbjct: 63 EKNERQAAMIITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIRE-IRNGANII 121 Query: 337 VDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + I + D R L E L + QT++ SAT Sbjct: 122 IGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMFFSAT 181 Query: 396 PGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + + + + + LL+ + ++ E+ Sbjct: 182 IPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNEKK--PEK 239 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ T+R AE + ++ G + +H + R + + G ++L+ N+ Sbjct: 240 AIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAAR 298 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+ VS + DA+ + ++ + +GR+AR +GKA + I Sbjct: 299 GLDIDNVSDIINFDAETD-----PKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIEN 353 Query: 568 TERRREKQQKYN------EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +++ + + + ++ L + +G R Sbjct: 354 YAKVKLSYLEFDLSTYRTKMNEFYKENGKQEFETALRRSNFSSNRNFRGNNPHRREFGRS 413 Query: 622 NVPMDMSP 629 N S Sbjct: 414 NNGGHYSK 421 >UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=Deltaproteobacteria RepID=A0LLL9_SYNFM Length = 533 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 59/386 (15%), Positives = 109/386 (28%), Gaps = 33/386 (8%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I + L L E L++ T F + Sbjct: 168 AVFIITMLTQFLRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFG 227 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + P L D+ L + + I + M Sbjct: 228 GMDYEKQKRRLTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDV 287 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + + QT+ SAT + + V Sbjct: 288 QRIIHY---------------TPPKAQRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPE 332 Query: 420 DP---IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + R + T +D+ + + +RV+V T + A LTE L +G Sbjct: 333 QVAVDTVNQRVLITTIDEKFTLLFNMITRQNLDRVIVFTNRRDQARRLTERLGSYGISCA 392 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 L ++D +R++ + + R G+ VLV ++ GL + VS V + + Sbjct: 393 LLSGEVDQKKRVKTLEEFRNGKIRVLVATDVAARGLHVEAVSHVFNYNMPMD-----PED 447 Query: 535 LIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR-------EKQQKYNEEHGITP 586 + IGR R +G ++ + + + A+ + E + E TP Sbjct: 448 YVHRIGRTGRAGTSGISVSFASEDDSFLIPALEKYLGHEIHCEHPDEDMLETLPEPTHTP 507 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRG 612 + G+N T + G Sbjct: 508 VAAERPRRSGPYRGRNPRSTGRRKTG 533 >UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1DYF6_9CHLO Length = 442 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 17/251 (6%) Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-PQTIY 391 L+V + G +RAR L E L + + E QT+ Sbjct: 132 TLVVGTPGRLLAVMGTGALGLERARLLVLDEADRMLALGFAEQLEQIREALPRPGRQTLM 191 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + G +D + V + LL I + Sbjct: 192 FSATFPKGVRAVAKAWLAPKPAIGDGVAAGDLNVDQTVHVCAEHKKGRKLLKHITELRKN 251 Query: 446 NER----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + R VLV + + + L+ HGE+V LH ++ R + ++D + G+ VLV Sbjct: 252 DGRSKSRVLVFANRIKTVNFVGDLLKRHGEKVCTLHGELKQERRDQALKDFKSGKSPVLV 311 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+ + V D S +GRA R+ G A+ + + Sbjct: 312 ATDVAGRGLDITGLEHVVNWDMP-----GSVEQYTHRVGRAGRSGRKGAALSFFTRNMAP 366 Query: 561 MAKAIGETERR 571 +A + RR Sbjct: 367 IAPDLVRLLRR 377 >UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBP0_ELUMP Length = 1044 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 93/286 (32%), Gaps = 44/286 (15%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAIN 446 T+ +SATP L +S + + + T + V +DL + +RQ Sbjct: 624 HTLMLSATPIPRTLNQSLSSLRNLSLIETPPQGRMPVKTIVTPWNNDLAANAVRQEIGRG 683 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + E E L+ R H ++ + + E+D+L+ Sbjct: 684 GQVYFVYNRVQSMESRLELLKRLVPEARICMAHGQMNETALEKTLWAFYNHEYDILLAST 743 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD--------- 555 ++ GLD+ + + I A G + L Q GR R KA Y Sbjct: 744 IIESGLDISNANTLIIESAQDFGLAQ----LYQLRGRIGRGDR-KAYCYLFHPDWLFQKP 798 Query: 556 ---------------KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +T ET ++R E G G + D+ G Sbjct: 799 KDNIERENNFEDLKAFLTKKKEADPTETAKKRLSALMEFSELG---SGFKLALRDMEIRG 855 Query: 601 QN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + T+ G + V + + + ++ +L+G ++ Sbjct: 856 AGELLGTRQHGF--------ANEVGLSLYCDMVAAEVKKLKGEPVE 893 Score = 99.9 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 29/220 (13%) Query: 38 LGVTG-SGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 G+ K + + + L + ++ ++ + +K + Sbjct: 11 YGLPNFGAKARFVFDKFSSLDKNSVFVSNEEEDLDAFESALKTWSEGK------------ 58 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRDVVVVASVSAIYGLGD-PDLY 154 E S ++ + + A +L + + ++ + + Sbjct: 59 ----------ILTEVYLSDDKGML---MHALYKILKSSAPLAITSTYQNLNIPLPGKKDF 105 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L + ++ ++ + ++ L Y R + G F VRG V+D+F + R+ Sbjct: 106 LSKLKNIKQTEVLKRGDLIDYLHSCGYKREEFTENPGEFAVRGSVVDVF-IHGQKLPARL 164 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 VE +S FD T T+ P P Sbjct: 165 YFAGNIVETISSFDVDTQNTKEYKNEITVIPLHFEELPSN 204 >UniRef50_Q09775 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosaccharomyces pombe RepID=ROK1_SCHPO Length = 481 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 82/251 (32%), Gaps = 14/251 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEALAP 387 L + + + I ++ + E + + Sbjct: 163 LREKYDMCIGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNI 222 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 SAT + E + VD + GL +D + T +L ++ Sbjct: 223 CKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMI 282 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + RV++ A+ L L V +H ++ +R E + R GE VL Sbjct: 283 SNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVL 342 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + +LL G+D V +V D F +S S I IGR R G+A+ + K Sbjct: 343 IATDLLARGIDFHGVKMVINFD-----FPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDG 397 Query: 560 SMAKAIGETER 570 K I R Sbjct: 398 EYIKLIAGVMR 408 >UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Vibrio alginolyticus 40B RepID=D0WTV5_VIBAL Length = 445 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 91/306 (29%), Gaps = 18/306 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + ++V + + L E L + Q Sbjct: 147 LATNPHILVATTGRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQ 206 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQ 441 T SAT + K+ + + + + ++ L+ I++ Sbjct: 207 TAMFSATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQK 266 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A + LV K A+ L + L + G LH + ER E + + G+ VL+ Sbjct: 267 NAWT--KALVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLI 324 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 +LL G+ + ++ +V + + + +GR AR G A+ Sbjct: 325 ATDLLARGIHIEQLPVVINFELPMY-----AETYVHRVGRTARAGEQGVAMSLVCHGEMD 379 Query: 561 MAKAIGETERRREKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 AI +R Q + + + D A + AK K Sbjct: 380 ALSAIRHLTQRALPVQDLAGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKR 439 Query: 618 VEPDNV 623 P Sbjct: 440 PAPSAK 445 >UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=canis group RepID=Q2GHL2_EHRCR Length = 1134 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 95/257 (36%), Gaps = 23/257 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 I +SATP L S + D + T + + + ++ + I + Sbjct: 740 KTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAVTTYTTYYEETIIKDAIIRE 799 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVL 500 RV + +++ + + ++ H + + I+ D G+F +L Sbjct: 800 HNRGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLSPTQLDTIMNDFFDGKFTIL 859 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ GLD+P + + I +AD G + L Q GR R+ K Y Sbjct: 860 LTTSIIECGLDIPFANTIIIHNADMFGLAQ----LYQLKGRVGRSST-KGFAYFILSE-- 912 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 KA ++ + E Q + + G N + D+ G + + Sbjct: 913 --KATNKSAIKLEIIQSIDSIN----SGFNLSLHDMDIRGFGNLVGEEQSGN-------I 959 Query: 621 DNVPMDMSPKALQQKIH 637 ++ +++ + L+++++ Sbjct: 960 KDIGIELYQQMLEEELN 976 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 60/447 (13%), Positives = 144/447 (32%), Gaps = 52/447 (11%) Query: 37 LLGVTGSGKTFTIANVI-ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + + + + I + L + + +T L K + P + F Sbjct: 7 IFNIPQTLEPLVIIKMYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIF------ 60 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVVVVASVSAIYGLGDPD 152 P+ ++ K S + + R+ +++ R +++++++AI Sbjct: 61 -------PAWNSIPYKKNSPHNSVMAERIKTLYSLITRHNDNPYIIISTINAITQKVLHQ 113 Query: 153 L-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 L+ +L +T I + I L Y++ G F +IDIFP Sbjct: 114 NIILQSVLKITSLQNITKNHIEDYLTNHGYSQYSIVQDIGEFATYNNIIDIFPTTY-KNP 172 Query: 212 LRVELFDEEVERLSLFDPLTGQIVST--IPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +R+ L + ++ + F+ T I + + IYP + + ++ I + K + Sbjct: 173 IRIHLNNNLIQSIHYFNRQTQLIDNNSSLNEVVIYPTSEIIKQKKNIDIFSKTYKTK--- 229 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + Q L + G EN+ +F+Y+ Sbjct: 230 -----------------PNQDQNLLNTIISGKKHIGEENFLPLFYKEELQN----IFNYI 268 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + L+ ++ I +I + + Y P L +F+ +T Sbjct: 269 SQNTTLIFND--KLINEIKEYNNQIYLNYRSQLSY-QVPPPQLYVDSEEFKIITKQFHKT 325 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-VATQVDDLLSEIRQRAAI--- 445 I+ + + + ++ T + + + V + D+ + Q Sbjct: 326 IFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVPNFKTLVQNKQIDIFEILTQYIKTTCH 385 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGER 472 +++++ + E + L + Sbjct: 386 TKKLIIACYSTGSLEYIQNRLRTLNIK 412 >UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q5R2_SCHMA Length = 463 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 21/264 (7%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + + L + + + + + M + + + L+N Sbjct: 151 TPGRVLELLRQGNIRLNKLRSLVLDEADEMLNRGLHDQLEEIYRRLPSHTNLNN------ 204 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDLL 436 +++ Q + +SAT LE + V L + + + Sbjct: 205 -KKSVNCQIVIISATMLKEHLELFQNLTSNPVCVLVPRDELSLSDLQQFYIDVGSEEWKF 263 Query: 437 SEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + +V T+R E L L+ G V H D+D +R +++ R Sbjct: 264 EALNDLFSSVCVSQTVVFVNTRRKVEWLASQLKREGFTVAAAHGDLDQSQRESVMKQFRS 323 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 GE +L+ ++ G+D+ V LV D + + IGR+ R G A+ + Sbjct: 324 GECRILISSDMWARGIDVQTVGLVVNFDLPM-----NTSEYLHRIGRSGRFGRTGLAVSF 378 Query: 554 GDKITPSMAKAIGETERRREKQQK 577 K + E + Sbjct: 379 IANAEER--KQLLEICNYYQIAIP 400 >UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelowiella natans RepID=Q3LWE1_BIGNA Length = 378 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 83/247 (33%), Gaps = 15/247 (6%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +V + + G + R L E + + Sbjct: 125 LKKNFHGIVGTPGRVLHLLQIGSLAITKIRTFVLDEADILMNKNFKIDIFNIYRYLNSKV 184 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIR 440 Q I SAT Y L+ + ++D V+ + + L +I Sbjct: 185 QIIICSATIPLYTLQAASKFLLDPVMILMRKEEINIDKIKQFYISVFIEENKLLALLDIF 244 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + +VL+ T R A + L + V +H + ER I ++ R G+ L Sbjct: 245 ETLLVG-QVLIFCNTIRKANWIHNKLLANNFNVGLIHGRVIQKERTNIFKNFRDGKTRAL 303 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GL++PEVSLV D + + IGR R G AI + Sbjct: 304 VTTDVSSRGLNIPEVSLVINYDIPTF-----KDVYLHRIGRTGRFGRQGVAINFAKLRDL 358 Query: 560 SMAKAIG 566 K + Sbjct: 359 HNIKNLE 365 >UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI0_LACBS Length = 439 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 94/298 (31%), Gaps = 39/298 (13%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 ++ R P + D + + ++ + + M + + + Sbjct: 139 MTTRIIVGTPGRILDLMQEGVCDLSGVDYLVLDEADRMLDKGFENDIRNIISSTKPTAE- 197 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIE 424 QT+ SAT + + V G ++ + Sbjct: 198 --------------RQTMMFSATWPEAVRRLASTFQTNPVRVTVGSDDLTANSRVEQSVA 243 Query: 425 VRPVATQVDDLLSEIRQRAA---------INERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 V + D L + Q+ + + +L+ L K+ A + + L+ +G V Sbjct: 244 VFDDSRSKDQRLLALLQKLSHKKTSTKGASDSLILIFALYKKEASRVEQMLKYNGYSVGA 303 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH D+ R+E + + + G ++V ++ GLD+P V V F + Sbjct: 304 LHGDMSQPARLETLENFKNGTTGLMVATDVAARGLDIPNVGAVINY-----TFPLTIEDY 358 Query: 536 IQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 I I GK+I + + A RE Y E P + KK Sbjct: 359 IHRIGRTGRGGKTGKSITFFTGDNHERSLAGEFARVLREGGFDY-EGLKKFPMTIKKK 415 >UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=Sulfolobaceae RepID=C3NII4_SULIN Length = 360 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 29/270 (10%) Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G +Y + P L D + V + + M ++ Sbjct: 113 GGMSYDDQRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILN 172 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 A + SAT + + + D P+ E Sbjct: 173 HCNAKIAG------------------FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEE 214 Query: 425 VRPVATQVD----DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 V+ +V D +S++ + E++LV T+ A L L+ G V L D+ Sbjct: 215 VKQKFVKVRNDWNDKVSKLLEEI-NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDM 273 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R++ + G+++VLV +L G+D+ +V+ V D R + I +G Sbjct: 274 PQSVRLKNFYGFKKGKYNVLVATDLASRGIDIIDVNKVINFDIP-----RDVETYIHRVG 328 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETE 569 R R G+AI + M K I Sbjct: 329 RTGRMGRVGQAITFYTFREADMIKRINNLL 358 >UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 Tax=Eumetazoa RepID=DDX46_DANRE Length = 1018 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 91/317 (28%), Gaps = 25/317 (7%) Query: 329 LPADGLLVVDESHVTIPQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V I G + R + E + + ++ + Sbjct: 460 LKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVR 519 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G ++ + V + LL Sbjct: 520 PDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLE 579 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + V++ + A+ L + L + LH ID +R II D + G Sbjct: 580 ILGHYQEKG-SVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGAC 638 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV ++ GLD+ ++ LV + GR R G A + + Sbjct: 639 RLLVATSVAARGLDVKQLILVVNYSCPNH-----YEDYVHRAGRTGRAGNKGYAYTFITE 693 Query: 557 ITPSMAKAIGETERR-------REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + I + +Q N + +G K + Sbjct: 694 GQARYSGDILKALELSGSSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKFDETEH 753 Query: 610 GRGKSRPIVEPDNVPMD 626 R ++ + + Sbjct: 754 ALANERKKLQKWALGLH 770 >UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0EQ53_ENTDI Length = 585 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 115/371 (30%), Gaps = 39/371 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P +V ++ + A E ++++ L T F L + Sbjct: 229 AYLIPLIQFVLKLPKLTEETSA-SGPYALILAPTRELALQIQQETLKLATPFGLRVCC-- 285 Query: 301 GYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 C G E+ + G P L D L L++ V + + M Sbjct: 286 --CIGGESIQPQIEELSNGAEIVVAAPGRLKDLLSQSYLVLGQCYFVVLDEADKMIDLGL 343 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ-------TIYVSATPGNYELEKSGGDV 408 + + LPS D + E T SAT + + + + Sbjct: 344 DVQVRYI--FSELPSVKDGSTEEIISMEKENASGNPSTRTTFMYSATMPSTLEKITTEYL 401 Query: 409 VDQVVRPTGLLDPIIEVRPVAT-------QVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + G + E + L+ I+ + +V ++ E+ Sbjct: 402 RRPITISIGKTGNVAENVKQNVVWVEDNMKKRKLVQVIKSSSPP---TIVFVNQQKTVEE 458 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + LE+ +H +ER + + + ++ V+V N+L G+D+ V+ V Sbjct: 459 ICLLLEKEKINCVGIHGGKRQIERTDALEGFKRKKYPVMVATNVLSRGIDIESVANVINY 518 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + +GR R G AI + I + K + R+ Q + N Sbjct: 519 EMP-----QKIEEYTHRVGRTGRAGKGGNAITF---INENDGKEVLNQLRQILVQSR-NS 569 Query: 581 EHGITPQGLNK 591 L K Sbjct: 570 IPKELDSFLKK 580 >UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Lodderomyces elongisporus RepID=PRP5_LODEL Length = 994 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 102/354 (28%), Gaps = 30/354 (8%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRL 368 + G L ++V I G + R L E Sbjct: 492 VCCCYGGSNIENQISELKRGVNVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMF 551 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---- 424 + + K QT+ SAT + + + + + G + + Sbjct: 552 DMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQ 611 Query: 425 -----------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + +++D+LS +VLV + A+ L L + Sbjct: 612 EIILFEDTDQLMNHKIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPC 671 Query: 474 RYLHSDIDTVERMEIIRDLRLGE--FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +H D ++R IR+ + +VL+ ++ GLD+ + LV + Sbjct: 672 IAIHGGKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSH----- 726 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + +GR R +G+AI + D + + + + ++ I + + Sbjct: 727 LEDYVHRVGRTGRAGKHGEAITFVDNTQEKEISILVKALKMSSRAVD-SKLQEIADKFMK 785 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGL 642 K + R M + + ++ +L Sbjct: 786 KIESGEEKRSSGFGGKGLEKLQNVRETNMQLQKKMFGNFKKEDGKKSHRDLSEQ 839 >UniRef50_B7XJD7 Superfamily II DNA/RNA helicase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJD7_ENTBH Length = 489 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 122/393 (31%), Gaps = 46/393 (11%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + P E+I ++ + ++ N +L Sbjct: 91 TNKLTNLILVPTRELA---EQIKTEGLKLIKAYESKTPFSYSYNNAYLNFKLKNTHLTSK 147 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + L G N S P L DY+ + + + + + + + M Sbjct: 148 IKIEALYGKCGTRNLSN---VNILVACPGKLLDYINTNRITLSTVTRLVLDEADKMMDMG 204 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD---Q 411 + + + + SAT + D Sbjct: 205 FSDAILSI----------------YSHLTISNLNVLCFSATYNKSIQSVLKKLLPDNHIF 248 Query: 412 VVRPTGLLDPIIEVRP---VATQVDDLLSEIRQR---------AAINERVLVTTLTKRMA 459 + +++ I + + L++ ++QR +++ ++ K+ Sbjct: 249 IEIKNEVIETITQEFIKVGYKEKNKRLIALLKQRCNFITSWSNKTESDKCIIFVEKKKDC 308 Query: 460 EDLTEYLE--EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 L E L+ + + L D++ R +R ++G +VLV ++ G+D+ ++SL Sbjct: 309 PYLIEELKKLDQNISIDMLQGDMEQSARDISLRKFKIGITNVLVATSIAARGIDIKDISL 368 Query: 518 VAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V + K+ + I IGR R G A+ + I I E + K+ Sbjct: 369 VINYELPKD-----IKEYIHRIGRTGREGKKGSAVTFYSDIQNYNIDFIKELIIK-LKES 422 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 K + N K D N K K K Sbjct: 423 KNDVPVDFLNYINNSKGKDKQYKKNNRYKDKEK 455 >UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Oligohymenophorea RepID=Q240I5_TETTH Length = 749 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 60/376 (15%), Positives = 117/376 (31%), Gaps = 25/376 (6%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I T+ + + ++ L L E Q LT Sbjct: 367 SQTGTGKTCAFLIPLITYLRSLPPMDEEIAKDGPYALILIPTRELAPQIEKEFQNLTSNM 426 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ G G + + L + D L + L++ S V + + M Sbjct: 427 RM-KSLVMVGGKDEGNQAFKLKLGCELLIGTVGRIKDALEKNYLVLDQVSWVVLDEADKM 485 Query: 351 YRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIY-----VSATPGNYELEKS 404 + + + + + D +E EA + I+ SAT + Sbjct: 486 IDLNFEQDVNFILDKIRTNMKSEDENMAVLQEQEAKVGEKIFRVTHLFSATMPPNLERLA 545 Query: 405 GGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + G ++ I++ Q L +I + A +++ K Sbjct: 546 KKYLRSFCYISIGEAGDAKKDIEQIVDFMS-EGQKKSRLQKILETAKPP--IIIFANEKT 602 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E L++ L+ G + H +R + + G++D+LV +L GL + V + Sbjct: 603 AVEKLSKILDRWGWQNVIYHGGKTQQQREAAVDGFKKGKYDILVATDLGARGLHVDGVKM 662 Query: 518 VAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V DA ++ + I GR R G A + ++ + E + Sbjct: 663 VINFDAP-----KNIKDFIHRTGRTGRAGKRGIAYTFVTNHNEAIMYDLREFLFKNN--F 715 Query: 577 KYNEEHGITPQGLNKK 592 E P K Sbjct: 716 DIPSELDTHPAAQTKP 731 >UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME Length = 1224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 78/253 (30%), Gaps = 18/253 (7%) Query: 329 LPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V I + G + R L E + + ++ + Sbjct: 630 LKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVR 689 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + G ++ + + + LL Sbjct: 690 PDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLL- 748 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ ++V + A+ L L + LH ID +R I D + G+ Sbjct: 749 ELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKV 808 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +L+ ++ GLD+ ++ LV D + GR R G A + Sbjct: 809 RLLIATSVAARGLDVKDLILVVNYDVPNH-----YEDYVHRCGRTGRAGKKGSAYTFITP 863 Query: 557 ITPSMAKAIGETE 569 A I Sbjct: 864 EQSRYAGDIIRAM 876 >UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAU7_KANKD Length = 458 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 16/251 (6%) Query: 329 LPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + +++ + + + E + F Sbjct: 121 FRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDR 180 Query: 388 QTIYVSATP-GNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + ++ I + L + Sbjct: 181 QTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWL 240 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V TK + L + H LH DI R ++ R + V Sbjct: 241 L-TNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKV 299 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ G+D+ ++ LV D + I IGR AR GKA+ Sbjct: 300 LIASDVAARGIDVKDIDLVINFDM-----AHNAEDYIHRIGRTARAGETGKAVSLISHRE 354 Query: 559 PSMAKAIGETE 569 ++ I + Sbjct: 355 WNLMVTIEKAI 365 >UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Campylobacterales RepID=D1AZN5_SULD5 Length = 407 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 103/340 (30%), Gaps = 15/340 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L E + LT + +++ S + + GE Sbjct: 58 LENWSAQTHEGKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQL 117 Query: 327 DYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + +VV S + R L E L + E Sbjct: 118 LEIQKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQ 177 Query: 386 APQTIYVSATPGNYELEKSGGDVV---DQVVRPTGLLDPIIEVRPVATQVDD---LLSEI 439 Q + SAT + + + I R + ++ LL E+ Sbjct: 178 KRQNLLFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLREL 237 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + VLV KR A+++ +H H D+ +R ++ + + V Sbjct: 238 LRENDWD-LVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRV 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L ++ GLD+ +VS V D RS I IGR R G AI D Sbjct: 297 LFATDIASRGLDIDDVSCVINFDLP-----RSSEDYIHRIGRTGRAGKEGLAISLIDHED 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + I + + +++ + + + + K+ + Sbjct: 352 KAHFALIEKRCALKLTKEQI-KGFELVGEAIQKEKGNAPI 390 >UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q234J0_TETTH Length = 744 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 58/344 (16%), Positives = 111/344 (32%), Gaps = 45/344 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D L+ + + M + Sbjct: 202 TPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKI------------FGFIKN 249 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVV----------RPTGLLDPIIEVRPVAT 430 + PQ + SAT ++ + + + + V + + + + P Sbjct: 250 DKGEERPQNLLFSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQ 309 Query: 431 QVDDLLSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERME 487 + + + I + RV++ TK A ++ + + + V+ LH DI +R Sbjct: 310 RTEAIGDVILCYGGGAHSRVIIFCETKNEANEI---MLKANIKQDVQVLHGDIPQKQREI 366 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + R G+F LV N+ GLD+PEV L+ L+ KE + I GR R Sbjct: 367 TFQGFREGKFKCLVATNVAARGLDIPEVDLIVQLEPPKE-----LDAYIHRSGRTGRAGK 421 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G I + T I E++ + + + P L + + + Sbjct: 422 KGVCITFY---TKKQQSLIERIEKKCHIKMQ--KVGAPQPADLIRASQNDIKKNLMSVNR 476 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG---LMMQHA 647 G K + + +AL++ I + G M Q + Sbjct: 477 TVLGIFKEVSVDLIQEFGPE---EALERAIAFISGFTEKMKQRS 517 >UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Candida glabrata RepID=PRP28_CANGA Length = 582 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 89/258 (34%), Gaps = 27/258 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L +++ + + + M + + Sbjct: 314 TPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSILSHLM------------- 360 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQVDDL 435 E A QT+ +AT + + G + + + G I +V D Sbjct: 361 ADELAARQTMLFTATLSSSVESIAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDDDKK 420 Query: 436 LSEIRQRAAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LS ++ N ++ K A+ LT L + + LH +R I+ L+ Sbjct: 421 LSFLKDDLIKNGLPAIIFINYKETADWLTLRLSDR-FNIVTLHGSKSQSQRESAIQKLKS 479 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G +VL+ N+ GLD+P+V+LV + I IGR R G A+ Y Sbjct: 480 GTANVLIATNVAARGLDIPDVALVVN-----FQMSKKFDDYIHRIGRTGRAGKTGIAVTY 534 Query: 554 GD-KITPSMAKAIGETER 570 + P + K + + + Sbjct: 535 LTGEEDPQLIKQLAKYVK 552 >UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N876_PHYIN Length = 681 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 88/287 (30%), Gaps = 23/287 (8%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + D++ L + + + + + M V + + Sbjct: 235 TTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKV----------FTAMDQVK 284 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV---------DQVVRPTGLLDPIIEVRPVATQ 431 QT+ SAT + + + + D + + + I + Sbjct: 285 NESTGKRQTLLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGR 344 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L + + A + R ++ TK+ +L + E + LH DI +R ++ Sbjct: 345 PTLLANLLGVYAKKDSRTIIFAETKKDCNELAVH-PEIKTDCQVLHGDIAQEQRETTMKA 403 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD-KEGFLRSERSLIQTIGRAAR-NVNGK 549 R G +L+ ++ GLDM V LV + K + + + GR R G Sbjct: 404 FREGRLRLLIATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGI 462 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I I + + ++ + K + +I Sbjct: 463 CITLYTNRQRDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEI 509 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 64/388 (16%), Positives = 123/388 (31%), Gaps = 59/388 (15%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME-EIKEELAARRKVLLENNKLLEEQRLT 287 + F I P + E+ VQ + ELA + K L N +++ R Sbjct: 43 VKSQTGSGKTASFGI-PVCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCA 101 Query: 288 QRT--QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q E + EL P +FD++ L + + ++V I Sbjct: 102 AIFGKQPFNEQIRELKQ-----------RVHIVVGTPGRVFDHMERGTLDLSEVNYVVID 150 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M L ++ L T SAT E Sbjct: 151 EADKM-----------------LSMGFIDQIKDILGELRLNKTTALFSATFSKEIEEICE 193 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + + ++EV+ D + + K + + + Sbjct: 194 EYMRNPM---------LLEVKSKVFNRDRIEESAIEIEE-----------KNKVKSVYKM 233 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L++ G LH D++ +R+E++ + R F VLV ++ G+ + + LV + Sbjct: 234 LKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAARGIHVDSIELVINYEVPM 293 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 E S + IGR R GKAI + + + + E ++ + + Sbjct: 294 E-----TESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGYEIRKASLPSDDEV 348 Query: 585 -TPQGLNKKVVDILALGQNIAKTKAKGR 611 + + K+ + K + G Sbjct: 349 KAGRKIFKESQKVQLKESKKPKKEVHGD 376 >UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Plasmodium (Vinckeia) RepID=Q4Z5Q6_PLABE Length = 1312 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 118/361 (32%), Gaps = 26/361 (7%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSAL 372 G + L ++V I + +RA L E L Sbjct: 677 YGGSNIGAQLNVLKKGVEIIVGTPGRIIDILTISNSKVTNLNRASFIVLDEADRLLDLGF 736 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEV 425 +++ QT +SAT NY + + + G + +EV Sbjct: 737 ESQIHSILNNCRKDKQTAMISATFPNYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEV 796 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++ LL + + +L+ + A+ L L ++ + LH D +R Sbjct: 797 LEEKKKLFRLLKLLGEWIK-YGLILIFVNKQLEADLLYLELFKYEYKTLVLHGGQDQSDR 855 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ + + +L+ +++ G+D+ + LV + I IGR R+ Sbjct: 856 EHTLKSFKDEQNKILIATSVMARGIDIKNIILVINYECP-----DHIEDYIHKIGRTGRS 910 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRRE----KQQKYN-EEHGITPQGLNKKVVDILAL 599 N G A + + A I + K E + + +N K+ + Sbjct: 911 NNIGYAYTFITPNEHTKAYDIYNLIKNNIYYINKTIDIPIELEHMANEYMNSKITEKDGN 970 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 N + KG+G E + M D++ K L I E E + + E + Sbjct: 971 KLNTSNGGYKGKGFKFTPNEKSRMQMDKDLAKKELG-LIEEKEDEDREAGYRSDMENDGK 1029 Query: 658 I 658 I Sbjct: 1030 I 1030 >UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=Eukaryota RepID=RH10_ARATH Length = 456 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 108/379 (28%), Gaps = 20/379 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 ++ + K + L+ + +++ + + + G Sbjct: 72 LEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQ 131 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFE 380 T+ L ++V + + + L E L + + Sbjct: 132 QTIA--LGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDL 435 E L +T SAT + + + V + + R VA + D Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDC 249 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 ++ T T L L G R + + +R+ + + G Sbjct: 250 YLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAG 309 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 E ++LV ++ GLD+P V +V D + + I +GR AR G I Sbjct: 310 ECNILVCTDVASRGLDIPSVDVVINYDIP-----TNSKDYIHRVGRTARAGRSGVGISLV 364 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEH-----GITPQGLNKKVVDILALGQNIAKTKAK 609 ++ I + ++ + E+ + +++ G + + Sbjct: 365 NQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDD 424 Query: 610 GRGKSRPIVEPDNVPMDMS 628 + D + Sbjct: 425 EESERFLGGNKDRGNKERG 443 >UniRef50_Q9C886 RNA helicase, 5' partial; 101954-101280 (Fragment) n=9 Tax=Eukaryota RepID=Q9C886_ARATH Length = 155 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +LV TK+ + +T L G +H D ER ++ + R G+ ++ ++ Sbjct: 1 ILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAAR 60 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+ +V V D F S + IGR R G A + AK + Sbjct: 61 GLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTN 115 Query: 568 TERRREKQ 575 + ++ Sbjct: 116 ILQEAGQK 123 >UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S6M9_OSTLU Length = 755 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 57/352 (16%), Positives = 115/352 (32%), Gaps = 28/352 (7%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV--EYGFRLPSALDNRPLKFEEFEALA 386 L +VV I + + TL+ E L + Sbjct: 267 LRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKK 326 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---------QVDDLLS 437 QT+ SAT + + + L + Q + L Sbjct: 327 RQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLM 386 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I R+ ++ ++ + TK+ A L + + LH D+ +R+ + + R G Sbjct: 387 AIVSRSY-DKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTV 445 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 L+ ++ GLD+P V V DA ++ S + +GR AR G A+ + ++ Sbjct: 446 THLIATDVAARGLDIPSVDAVISFDAP-----KTLASYLHRVGRTARAGKKGTALTFMEE 500 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K I +R K G +KK+ D+ + ++ Sbjct: 501 SDRKLVKTIA----KRGANLKARIVPGNIVAEWHKKIEDMEEQIV-----QINYEERTER 551 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 ++ + + + L+ E++ + E ++ +D L + Sbjct: 552 QLQKAEMEANKASNILEHA-AEIKSRPAKTWFQSERDKRNAQKDALKAMETA 602 >UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax=Eukaryota RepID=RH10_ORYSJ Length = 472 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 96/321 (29%), Gaps = 17/321 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +VV + + + ++ + L E L Sbjct: 158 LAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKE 217 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEIR 440 +T SAT N + + + V ++ A D L + Sbjct: 218 RRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVL 277 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +++ T L L + + + +R+ + + + ++L Sbjct: 278 NEL-PGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNIL 336 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+ V +V D + + + +GR AR G A+ ++ Sbjct: 337 ICTDVASRGLDIQGVDVVINYDIPM-----NSKDYVHRVGRTARAGNTGYAVSLVNQYEA 391 Query: 560 SMAKAIGETERRREKQQKY-NEEHGITPQGLNKKVV-DILALGQNIAKTKAKGRGKSRPI 617 K I + +K N E I + ++ + + + K + + + Sbjct: 392 MWFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDEE 451 Query: 618 VEPDNVPMDMSPKALQQKIHE 638 E N P+ K+ + Sbjct: 452 EEERNAPVSRKSKSFNKSRRR 472 >UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcus oceani RepID=Q3J811_NITOC Length = 431 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 42/313 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DY + V + + M+ R + P Sbjct: 139 TPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYILRRLPPPDKRLGM----- 193 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPV---ATQVD 433 SAT +E + + + + +D I E ++ Sbjct: 194 ----------LFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEEKIS 243 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL+ ++ + +V T TK +AE + YLE +G + L SD+ +R ++ + Sbjct: 244 LLLALFKRLVPRH--AIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQ 301 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 + +LV ++ GL + V+ V D + + IGR AR +G A+ Sbjct: 302 DRIYPILVATDVAARGLHISTVTHVFNYDLP-----QDPEDYVHRIGRTARAGASGLAVS 356 Query: 553 YGDKITPSMAKAIGETERRR------------EKQQKYNEEHGITPQGLNKKVVDILALG 600 + + I E + +Q+ H + + Sbjct: 357 FACEDYAFSLPDIEEYIGHKVVPFSVEEEELLVPEQRVFVSHKDKKKSHRRAPHPRQKKK 416 Query: 601 QNIAKTKAKGRGK 613 K G Sbjct: 417 SFQKKETYSGGKN 429 >UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Epsilonproteobacteria RepID=A8ERW1_ARCB4 Length = 995 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 23/283 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQR 442 +SATP L + + T + + V + L+ EI + Sbjct: 629 REDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEYSEKLIKEIILRE 688 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ E + +E ++ +HS I + +II EFD+L Sbjct: 689 KRRGGQLFYVHNNIASIEAKKKDIEAIVPNIKIDIIHSQIKPEQAEKIIEAFENKEFDIL 748 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ G+ +P + + I AD+ G L Q GR R+ Y + Sbjct: 749 LATSIVESGIHLPNANSIIIDGADRFGIA----DLHQLRGRVGRSNKEG---YCYYVVED 801 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K+I + +R + N G G D+ G +A+ Sbjct: 802 K-KSITDDAVKRLVALESNSYLG---SGTALAHQDLEIRGGGNIIGEAQSG-------HI 850 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA--AQIRDQ 661 + + K L+ + L G + ++ + A A I D+ Sbjct: 851 KQIGYGLYLKMLEDTLATLSGDEKNEKKTVDIKLAISAYISDE 893 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 76/217 (35%), Gaps = 27/217 (12%) Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 L+ +++ + A Q+ ++ + ++ Sbjct: 15 KRLKECQLLIVNDDRQA-QIASDIVSYLGFKPFLLADFRANFGD-------------DLL 60 Query: 114 SVNEHIEQMRLSATKAMLE-----RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID 168 S +E + TK + + ++D ++++ + I + + + ++ Sbjct: 61 SFSEEL----HEITKTLGDFYSYKKQDKILISPIRTISYPLPKEKCFE-SFTINFADRLN 115 Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 + +L Y D G +RG+++DI P SD RV LFD+EVE + FD Sbjct: 116 LEELKSKLYNWGYYFVDIVTSEGEVSLRGDILDICPLGSD-FGYRVSLFDDEVESIRKFD 174 Query: 229 PLTGQ-IVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 + I F+I P + E+I+ Sbjct: 175 IEDQKSSKEEIESFSINPA-FLALDEATFEEINEQIQ 210 Score = 50.6 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 31/236 (13%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + ++ + + + T + + + LE G RV L E Sbjct: 517 FGKTEVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKE 576 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMP--EVSLVAILDADKEGFLRSERSLIQTIGRA 542 + I + L + +++G + L LD+ ++LV I + K G + L Q Sbjct: 577 KTSIKKGLENADIKLVIGTHSL---LDIKTSNLALVIIDEEHKFGVKQK-EKLKQL---- 628 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI---TPQGLNKKVVDILAL 599 R + I ++ A+ + + +E G+ + K + +I+ Sbjct: 629 -REDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEYSEKLIKEIILR 687 Query: 600 GQNIAK-------------TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + K K P ++ D + + P+ ++ I E Sbjct: 688 EKRRGGQLFYVHNNIASIEAKKKDIEAIVPNIKIDIIHSQIKPEQAEKIIEAFENK 743 >UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JG19_9ALTE Length = 463 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 100/371 (26%), Gaps = 26/371 (7%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I + + LA L + ++L Sbjct: 85 QAQTGTGKTAAFLITAIQTMLETPIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAH 144 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + + + + + P L D+L + + + + + + Sbjct: 145 TGHKVVTVVGGMHYDKQRDQLQNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADR 204 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + QT+ SAT L + Sbjct: 205 MLDMGFIPDVKRIIR---------------KCTPKEDRQTLLFSATFNQDVLNLASMWTQ 249 Query: 410 DQV---VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTE 464 + P +E D+ L + E + LV + DL E Sbjct: 250 SAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLVNYLKRPEVDKALVFANRRDQCRDLEE 309 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G V + +I +R++ + + G VLV ++ G+ + V+ V + Sbjct: 310 DLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQVLVATDVAGRGIHVNGVTHVFNYNLP 369 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + IGR R G +I + + AI + ++ + +E Sbjct: 370 -----DNAEDYVHRIGRTGRAGSTGVSISFAGEDDSFALPAIEKYIGQKLANEVPDEALM 424 Query: 584 ITPQGLNKKVV 594 + Sbjct: 425 VPMDNAPIARK 435 >UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BZG6_THAPS Length = 466 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 85/261 (32%), Gaps = 33/261 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + + V + + M A ++ G Sbjct: 130 TPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEG-------------VG 176 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----------IIEVRPVA 429 Q + SAT + E D + I+V A Sbjct: 177 SKNREKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGA 236 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +L +I + +V T TK+ A++L + +H DI +R + Sbjct: 237 DAKKAILEDIIALF---GKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATL 293 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R G F+VLV ++ G+D+ +V LV + R + + GR R +G Sbjct: 294 AAFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPP-----RDVDTYVHRSGRTGRAGASG 348 Query: 549 KAILYGDKITPSMAKAIGETE 569 ++L + I ++ Sbjct: 349 ISVLLFQQNQARDIVRIEKSL 369 >UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q93382_CAEEL Length = 811 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 107/350 (30%), Gaps = 29/350 (8%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ + + + +++ E + N + + G G + Sbjct: 330 QPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINP-ICAYGGGSKWEQSNELQNE 388 Query: 332 DGLLVVDESHVTIPQIGGMYRGD-RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV I + R E + + + Q + Sbjct: 389 GAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCL 448 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRA--- 443 SAT + +VD V G + I + V D L + + Sbjct: 449 MFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEF 508 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 A +VL+ K +ED+ + L+ + LH D+ ER E + R + +LV Sbjct: 509 ASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVAT 567 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ GLD+ E+ V D R + + IGR R G A + M Sbjct: 568 DVAARGLDISEIRTVINFDM-----ARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMV 622 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + ++ + K ++D+ +A G Sbjct: 623 GHLVKNLESVSQE-------------VPKPLMDLAMKSSWFRGQRAGNGG 659 >UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12UP5_METBU Length = 522 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 93/308 (30%), Gaps = 35/308 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + D + + + M L + + Sbjct: 125 TPGRLLDHIERGTIDLGDVEILVLDEADRM-----------------LDMGFIDDVEEII 167 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDD--L 435 + QT+ SAT S + + D + +V + L Sbjct: 168 DECPSDRQTMMFSATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKLKQVYIDVPKKMKFSL 227 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + V+V T+ + + + L ++ +H +R + Sbjct: 228 LVHLLKSEKSG-LVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSS 286 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 LV ++ GLD+P VS V D + IGR AR GK I Sbjct: 287 NAHALVCTDVAARGLDIPHVSHVYNFDIP-----DDPSEYVHRIGRTARAGREGKVINVV 341 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + R + +++ E + + K D + G+ + +G Sbjct: 342 ADVDKGGFTRLSKMHRNFKIEREDLPEF----ERVLIKSED--SGGRPTRGRREDRKGGR 395 Query: 615 RPIVEPDN 622 R + Sbjct: 396 REDRKSAY 403 >UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQS1_9BACT Length = 1014 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 61/400 (15%), Positives = 118/400 (29%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q M + Sbjct: 508 PMDRLVVGDVGYGKTEVALRAVFKAAMDGFQVLVLVPTTVLAQQHYMTFRSRM--GPFPL 565 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF+S R E L D + VV +H + + R + + Sbjct: 566 KVELLSRFVSQRRQNEILTGLAD----GSVDVVIGTHRLLQNDLKIRRLGLIIVDEEHRF 621 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP + + D + T + Sbjct: 622 GVAHKERFRKLRSGVD--------VLTLSATPIPRTFSMAMKGMRDVSIIETPPGNRPAI 673 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + D L+ + + A +V + E+ +++ RV + H + Sbjct: 674 ITVTGAWDDGLVRKALAREMARGGQVYMLHNRVGTIEERAGWVKSRFPDVRVAFAHGRMR 733 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E + GE D+LV ++ GLD+ + + + D+ G + + Q GR Sbjct: 734 ENELEETMMAFYDGEIDILVCTTIVESGLDVGRANTLVVDDSRLLGLAQ----MHQLRGR 789 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + PS T R + + G D+ G Sbjct: 790 VGRRDD---TAYAFFLYPSDCVLPHSTAERLDAIGR----LSFQGAGYELAKEDLHIRGG 842 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 ++ + V + + + L+ ++ L G Sbjct: 843 GDLLGMSQ-------HGHRERVGLQLYYRKLRDEVDRLRG 875 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 45 KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 K A + + VL P++ A Y + K + Sbjct: 16 KGAVRAWICRERSSRLTVLLPDENQAEDFYSDAKILLSHEKIFRLP-------------- 61 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVG 164 D +EK + R + E +++ G+ P + + +L L +G Sbjct: 62 -DIPLEKGIVDDPASMVARGHVLRKWSEEGGILISTPG----GMMSPFMNSEGLLSLRIG 116 Query: 165 MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERL 224 + ++ L Y+R+D ++ G + VRG ++D+F S + LRV FD+E+E + Sbjct: 117 ECAGRDRLISWLDSSGYSRSDLVWKPGEYAVRGGIVDLFDP-SSRMPLRVVFFDDEIEEM 175 Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 LF P + F+++ VTP Sbjct: 176 RLFSPEDQTSKCKVEAFSVWELGDRVTPSAA 206 >UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=Deltaproteobacteria RepID=B8DQS6_DESVM Length = 990 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 103/334 (30%), Gaps = 18/334 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNR 375 G D L LVV + + DR R E L Sbjct: 212 YGGVGYGKQMDALRDGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPD 271 Query: 376 PLKFEEFEALAPQTIY-VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---- 430 + + + + Y SAT + L +G + + + + Sbjct: 272 MKEIQRYLPKRRISAYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETK 331 Query: 431 --QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D L I + ++ TK +T L+ G L +D+ +R ++ Sbjct: 332 PMDKDRALVRII-ESENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQV 390 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + LR G LV ++ G+D+P++S V + + S I GR R + Sbjct: 391 LGSLRKGGVRFLVATDVAARGIDIPDLSHVILYEPP-----EDRESYIHRAGRTGRAGSA 445 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG---ITPQGLNKKVVDILALGQNIA 604 G I D I + I + + + + ++ I L + L + Sbjct: 446 GTVISLVDIIQKLELQRIAKHYKIDIQHRPTPDDESVARIAGDRLTALLEARLRARTGLE 505 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + + + + D+ + + L Q E Sbjct: 506 RERQQRFAPLARALAGDDEQLALLAMLLDQYYQE 539 >UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein n=108 Tax=Proteobacteria RepID=A1S988_SHEAM Length = 613 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 111/357 (31%), Gaps = 39/357 (10%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P ++ R + R L + L + D++++ Sbjct: 53 ASFLLPALQHLIDFPRRRPGQPRVLVLTPTRE---LASQIHRYASHLATNLELDIKLITG 109 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 E + P L +YL + I + M Sbjct: 110 GVPYGPQEEMLKSNVDILVAT-PGRLLEYLDKGHFSAELVEVLVIDEADRM--------- 159 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP-GNYELEKSGGDVVDQVVRPTGL 418 L + Q + SAT G + + + + + Sbjct: 160 --------LDMGFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEPMFVESEP 211 Query: 419 LD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 I + LL+ + ++ + +R +V T+ + L L++ G Sbjct: 212 PRSEKAKIHQWIHLADDKDHKFALLTHLLKQEEV-KRAIVFCKTRDVVASLEGQLQQAGI 270 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 ++ D+D +R + + GE +VL+ ++ G+D+ +++ V D RS Sbjct: 271 ACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINFDMP-----RS 325 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + + IGR R G AI + + +G+ ER E+ K + P+ Sbjct: 326 ADTYVHRIGRTGRAGAKGTAIS---LVEAHDMRILGKVERYIEQPLKRRVIEELRPK 379 >UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Z1_THEAS Length = 558 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 15/236 (6%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPL 377 G L +VV + I +R D L E L + Sbjct: 111 GMDMERQVKALREGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELE 170 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIE---VRPVAT 430 ++ SAT + + + +V D I++ + P Sbjct: 171 DIMAAMTQVERSWLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARR 230 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + L + + +V TK ++L E L + G + LH D+ ER + Sbjct: 231 RFEGLANVLLFERPRRG--IVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALE 288 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +LR G +LV ++ GLD+ VS V + G + I GR R Sbjct: 289 NLRRGRSQILVATDVAARGLDISGVSHVI-----QFGLPGCLETFIHRSGRTGRAG 339 >UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSK1_PHATR Length = 595 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 19/321 (5%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +V I Q G + R + E + Sbjct: 87 LKRGTHIVTATPGRLIDILTMQSGKILSLQRVTYVVMDEADRMYDMGFAPQISAILAAVR 146 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G + E + LL Sbjct: 147 PDRQTVLFSATFPKAVESLARKSLQYPVEVMVGGRSVASDSVTQYAERVEEDEKFLRLLQ 206 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++ ++V+V T+ A++L E L +G LH + +R I D + + Sbjct: 207 VLGEQVEGTKKVIVFVDTQVRADNLFEQLLRNGYSTLSLHGGKEQEDRDSTISDFKRKDG 266 Query: 498 -DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +VLV + GLD+ + V A + + +GR R G A + Sbjct: 267 PNVLVATGVAGRGLDVGSCTCVINFSAPNH-----LEAYVHQVGRTGRAGNRGVAYTFVS 321 Query: 556 KITPSM-AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + A + + + E KV A S Sbjct: 322 STDEAKFAPNVVRAMSEAGQGDNISPELRQLSDEFQAKVEKGEARYAGSGFKGKGYTYDS 381 Query: 615 RPIVEPDNVPMDMSPKALQQK 635 + E + +AL + Sbjct: 382 TELSEAQKMARLEKRQALLEA 402 >UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encephalitozoon cuniculi RepID=RRP3_ENCCU Length = 400 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 97/293 (33%), Gaps = 16/293 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +VV + +R +R RK L E Sbjct: 115 LSKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREK 174 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIR 440 QT+ +AT + + S + T + + + L E+ Sbjct: 175 RQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELL 234 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + V+V A ++ L G LH ++ +R E +R + F+VL Sbjct: 235 -EMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVL 293 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V +L GLD+ V LV D K G + I +GR AR G++ +T Sbjct: 294 VCTDLGSRGLDISHVDLVINFDVPKSG-----KDYIHRVGRTARA--GRSGTAITLVTQY 346 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I + E EK+ + + + ++ + + Q K + K + Sbjct: 347 DVEQIQKIEFTLEKKLEEFKMMKKNFGTICARIEEAIQEAQETLKEERKRNRR 399 >UniRef50_C4QDH8 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QDH8_SCHMA Length = 612 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 81/286 (28%), Gaps = 62/286 (21%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D+L D + + + + + M + + + Sbjct: 253 CHFIVATPGRLLDFLKRDCISLKFCRSLILDEADRMLDMGFEEQIRQILESPKFQMPP-- 310 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPI--I 423 QT SAT + + TG + P Sbjct: 311 -------PTGNCRQTALFSATYPREVTLLAKDFLRGPNCISLTLSSAESNTGTIVPTWGK 363 Query: 424 EVRPVATQVDDLLSEIRQRAAINE------------------------------------ 447 +R D L+ I + + Sbjct: 364 AIRNKKEDEFDRLTRIIPKEINQQFQVVVGNPETAVPNHLLQLILEMNSKSLDLCGESVC 423 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 RVLV TKR + + YL +G R +H D + R + + R G +VL+ ++ Sbjct: 424 RVLVFCNTKREVDQIDNYLYSNGVRSTSIHGDKNQYSRAKSLDLFRKGTANVLIASSVAA 483 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+D+P V V G + IGR R +G+AI Sbjct: 484 RGIDIPNVFAVIN-----IGLPNELDDYVHRIGRTGRMGKSGEAIT 524 >UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus torridus RepID=Q6KZC2_PICTO Length = 387 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 94/284 (33%), Gaps = 34/284 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + D L + + + M L + K Sbjct: 127 TPGRIIDLINRDLLNLEHVGMFILDEADMM-----------------LDMGFIDDIYKII 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL------LDPIIEVRPVATQVDD 434 E Q + SAT + + D + + + P + Sbjct: 170 ENLPEKRQNVLASATMPERLDDMIKNLMNDPELIAVSNGYTPKTIVHDYTIIPEHKKFSA 229 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LLS I + + + ++ TK A L+E L + G + LH D+ R I+ R Sbjct: 230 LLSYIDE--NRDMKRIIFVRTKHGAVVLSEILNKCGFKNVTLHGDMRQRSREISIKRFRN 287 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 +++ N+ G+D+P+V + DA + +S GR+ R G A+ Sbjct: 288 YRSGIMIATNVAARGIDIPDVDEIINFDAPID----DIKSYSHRAGRSGRFGRPGHALTI 343 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + +M I E E + + + + I N DI+ Sbjct: 344 FTEKQKNM---INEIEMKNNVKMDH-KIIKINDVYYNIDYRDII 383 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 95/358 (26%), Gaps = 41/358 (11%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 +E F L + + R + EL + L + Sbjct: 36 IEGERDFVGLAQTGTGKTGAYGLPLIQSIDLSIPRPQAIVICPTRELCLQIAGDLRDFAK 95 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 E +++ ++ G P L D + + + Sbjct: 96 YMEDIRVAAVYGGADIVKQIRTVKGGAQII--------AATPGRLLDLINRKAIKPGHVT 147 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 V + + M L +T SAT Sbjct: 148 RVVLDEADEM-----------------LNMGFQEDINAILSSLPDERRTWLFSATMPKGV 190 Query: 401 LEKSGGDVVDQVVRPTGLLDP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + V G + I A L I LV Sbjct: 191 AAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFG-LVFCR 249 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T++ +++ E L G LH D+ +R +++ R VL ++ GLD+ + Sbjct: 250 TRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARGLDVDD 309 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 +S V + GR AR GK+I ITP + + ERR Sbjct: 310 ISHVI-----HYVLPDDPEAYTHRSGRTARAGKQGKSIA---LITPRENYRLKDLERR 359 >UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836_XENLA Length = 758 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 59/348 (16%), Positives = 123/348 (35%), Gaps = 35/348 (10%) Query: 329 LPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + +++ I + + + L E L + + + + Sbjct: 299 LRSGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQ 358 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + V L + +RP + ++ Sbjct: 359 RQTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVAC 418 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + V++ T TK+ A + L G +V LH ++ +R+E +R + + D Sbjct: 419 ALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 478 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ V V L + + + +GR AR G+++ + Sbjct: 479 ILVATDVAARGLDIDGVKTVINLTMP-----GTVKHYVHRVGRTARAGKAGRSVSLVGEE 533 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 M K I K+ + + + PQ + K D + TK++ + Sbjct: 534 ERKMLKEIV-------KKAQAPVKARVIPQDVISKFRDKI--------TKSEKEIYAVMQ 578 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLM-MQHAQNLEFEEAAQIRDQLHQ 664 +E + M MS + +L+ + + Q RD+ + Sbjct: 579 LEKEEREMQMSEAQISVAKKKLQQEKGGEAQPERSW---FQTRDERRK 623 >UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bacteria RepID=Q11TW3_CYTH3 Length = 388 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 93/259 (35%), Gaps = 30/259 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + D + + + M L Sbjct: 139 TPGRLLDLVDSKAVYLSDVEVLVLDEADKM-----------------LNLGFKEEMANIF 181 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDD----- 434 + Q + SAT G + + D V + I+ ++ +A V+D Sbjct: 182 KLLPQKRQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDARKGP 241 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL + + +N +VL+ T + A+ + E L+ + LHS R E ++ + Sbjct: 242 LLRYLIKEQKMN-QVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKA 300 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILY 553 G VLV +L+ G+D+P + V + RS + I IGR R +G AI Sbjct: 301 GNIHVLVATDLMSRGIDIPFLPFVINYELP-----RSPKDYIHRIGRTGRAEASGVAINL 355 Query: 554 GDKITPSMAKAIGETERRR 572 + I + ++ Sbjct: 356 ISEEETHHFSVIQKKMGKK 374 >UniRef50_B8BWZ3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BWZ3_THAPS Length = 409 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 83/261 (31%), Gaps = 21/261 (8%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L + L +V+ + G + G + Sbjct: 141 LDCLISTPLRLVECIERGMRLNGVRLIVLDEADRQNAQSGSSQSRTFLQQIDSILSHLPS 200 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------------LDPIIEVRPVATQV 432 SAT G S + + TG+ + I + + Sbjct: 201 TATRALFSATLGPSVRHLSESILRSPIDITTGIHAGIGGNSAAGGASEHIQQELKFVGRE 260 Query: 433 DDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L IRQ A VL+ +K A+ L L G RV +H+ R + Sbjct: 261 EGKLLAIRQLVAEGITPPVLIFLQSKERAQALFGELLYDGIRVDVIHAGRSASAREASVA 320 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R GE VL+ +L+ G+D V+LV D EG + + IGR R G+ Sbjct: 321 KFRKGETWVLICTDLVARGVDFKAVNLVINYDLPMEGV-----TYVHRIGRTGRAGRAGR 375 Query: 550 AILYGDKITPSMAKAIGETER 570 AI + + + I + Sbjct: 376 AITFFTEADFENLRTIANVMK 396 >UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 Tax=Magnoliophyta RepID=B7F5N3_ORYSJ Length = 590 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 52/380 (13%), Positives = 114/380 (30%), Gaps = 29/380 (7%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ Q E + Sbjct: 57 TPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER-----FS 111 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + SG E L + L ++ +H + + + + Sbjct: 112 NYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQK 171 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + + + +SATP L + D + T + + Sbjct: 172 FGVQQKEKIASYKASID--------VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVA 223 Query: 424 EVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDI 480 V+ + LS I+ A +V + +D+ ++L++ V H Sbjct: 224 VRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK 283 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + GE +LV +++ G+D+P + + + A+ G + L Q G Sbjct: 284 VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQ----LYQLRG 339 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R+ G A L+ + + + R EEH QG + D+ Sbjct: 340 RVGRSGTEGFAYLFYTDKS-----LLSKIATDRLGAI---EEHSDLGQGFHVAEKDMGIR 391 Query: 600 GQNIAKTKAKGRGKSRPIVE 619 G + + + ++ Sbjct: 392 GFGSLFGEQQSGDVANVGID 411 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 6/154 (3%) Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 Q + ++ DV + +D +I + + + I + Sbjct: 26 MDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISA 85 Query: 446 NERVLVTTLT----KRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V T K+ + ++E + +V E+ E+I +R G+ ++ Sbjct: 86 GFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHII 145 Query: 501 VGI-NLLREGLDMPEVSLVAILDADKEGFLRSER 533 VG +L E + + L+ + + K G + E+ Sbjct: 146 VGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEK 179 >UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GBS8_PHATR Length = 942 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 24/258 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAIN 446 + +SATP L+ S + D + V V +D++ I A Sbjct: 427 DVLTLSATPIPRTLQMSLSGIRDTSTIRSPPPMRKPTVTHVQDFSEDIVKTAISTELARG 486 Query: 447 ERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + M ++ + ++ G R+ H + E + + G +DVL+ Sbjct: 487 GQCYYVVPRISMLDEAEQTIQSLFPGIRIIQAHGRMQRNGAEENVAEFAEGNYDVLLATT 546 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P V+ + + ++ G +L Q GR R+ + + ++ Sbjct: 547 VIENGVDIPSVNTIVVQNSQAFG----MSTLYQLRGRVGRSDKQ---AFAYFLY--REES 597 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNV 623 I E R + E G G + D+ G + T+ G V Sbjct: 598 ITEQAAMRLQAIGELSELG---SGFDVANRDLEIRGAGSLLGTEQSGM--------AAKV 646 Query: 624 PMDMSPKALQQKIHELEG 641 D+ + L++ I +L G Sbjct: 647 GFDLYMRMLKKSIRKLRG 664 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 108/365 (29%), Gaps = 33/365 (9%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + L + ++++ E R + P L D++ + + + Sbjct: 93 MKHLGMSLDYQIQLIIGRESFQHQEKLLR-KNPEVLIATPGRLLDHIREKSISLEHLEFL 151 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN---- 398 + + M D+ + QT+ SAT + Sbjct: 152 VLDEADRMLD----------------MGFRDDVSAISNSAPNVKRQTMLFSATLEHVDVA 195 Query: 399 ----YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 L +++ ++ + T ++ L + ++ ++L+ T Sbjct: 196 NICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLV-KSEDYRQLLIFTA 254 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK E L + L ++ +H D+ +R + D R G VLV ++ GLD+ Sbjct: 255 TKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVAARGLDIRT 314 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 +S V D + I GR R G AI + I + + Sbjct: 315 LSHVINFDLPI-----NPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQSYLKVKL 369 Query: 574 K-QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 E + + A+ K+ P + + P + + Sbjct: 370 PCTMLEGFEAKFKGFKPKPAKKRLPVSNKGRPAKLARKGDKNAPKQKQNTAPKQDKKQGM 429 Query: 633 QQKIH 637 + + Sbjct: 430 RDSMA 434 >UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF36_XENLA Length = 800 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 28/287 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D + L + HV + ++ M+ + + + P +N Sbjct: 350 TPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDPEEN------ 403 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQV--VRPTGLLDPIIEVRPVA-------TQ 431 PQT+ SAT ++ + + Q V G + +Q Sbjct: 404 ------PQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQ 457 Query: 432 VDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 +L +I Q + + + ++ +K A +L+ + + LH D+ ER +++ Sbjct: 458 KAAVLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLK 517 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G F+VL+ N+ GLD+PEV LV + A KE + + GR R G Sbjct: 518 GFRQGTFEVLIATNVAARGLDIPEVDLVVLYSAPKE-----ADAYVHRSGRTGRAGRTGV 572 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I + + + + K+ + + + Sbjct: 573 CISLYEPWEKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSL 619 >UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Campylobacterales RepID=C3XFZ1_9HELI Length = 1042 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 60/441 (13%), Positives = 131/441 (29%), Gaps = 37/441 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + + + I + + + A+ + Q + Sbjct: 533 QESLKDLKSGMI--MDRLLNGDVGFGKTEVAMSLCFASALNDFNSIVLVPTTLLCNQHFE 590 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 E ++ +G Y + + + + ++V + +I + Sbjct: 591 SFKERLHNTKLPNGKILYIAKIDRFTTATQKRAIQENFKDNIQIIVGTHSLFNLEIENLG 650 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + L ++L + +SATP L + + Sbjct: 651 LMVIDEEHKFGVKQKELLKQ-----------KSLTTHILSMSATPIPRTLNMAYSKLKSI 699 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 T V + D L+ E I + +V + YL + Sbjct: 700 SELKTPPFFKQESKTFVKVKQDSLIKEVILRELRRGGQVFYIFNNIAKITTIQSYLHDLL 759 Query: 471 E--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 R+ LHS I+ + + + E+D+L+ +++ G+ +P + + I DA G Sbjct: 760 PQLRILILHSQINPKDTEKGMLAFLKKEYDLLLCTSIVESGIHLPNANTIIIDDAHNFGI 819 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 L Q GR R GK + + +T + I + +R + N G G Sbjct: 820 A----DLHQLRGRVGR---GKHVGFCYLLT---NENITQDAAKRLLSLEKNSYLG---SG 866 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE-LEGLMMQHA 647 D+ G +A+ V M + L+ + L+ + Sbjct: 867 AALAYHDLEIRGGGNLLGEAQSG-------HIKQVGFGMYVRMLEDTLQSLLQNEQQEQK 919 Query: 648 QNLEFEEAAQIRDQLHQLREL 668 +++ +A + + L + Sbjct: 920 VDIKLSVSAFLNESLVSSERM 940 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 76/254 (29%), Gaps = 22/254 (8%) Query: 24 LEEGLEDGLAHQTLL----GVTGSGKTFTIANVIADLQRPTMVLAPNKT---LAAQLYGE 76 + E LE + + L V S T+ N + P +++ ++ L Sbjct: 1 MVENLESSKSPKHLTEILTHVKISSLNQTLTNHTKNKNTPQILICSSEEILLAKEALCAT 60 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML----E 132 + + +P + Sbjct: 61 LNLISMQKT----KKEVKESTLPIVLPDIRLSPFDSTQSFYE---EFHELFAKLALWYEN 113 Query: 133 RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 ++++ + L + I + + +L Y + +G Sbjct: 114 DCKQILISPPHTLMAFMPSKELL-HSFCVRKSENIVVKDFIAKLIHYGYEHVEIVEMQGE 172 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTIYPKTHYVT 251 F RG++IDIF S + +R+ LFD E+E ++ F+ T + I IYP + Sbjct: 173 FSHRGDIIDIF-IPSFEFPVRISLFDTEIEEINFFNHETQLSQNEMIENLKIYPA-IFSL 230 Query: 252 PRERIVQAMEEIKE 265 + IKE Sbjct: 231 DESQHTLLESRIKE 244 >UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergistaceae RepID=C1TPC6_9BACT Length = 605 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 55/330 (16%), Positives = 101/330 (30%), Gaps = 21/330 (6%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF-RLPSALDNRPL 377 G L LVV T+ I + +++ G L + Sbjct: 144 GMDMERQIKDLRRGSALVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIE 203 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVAT 430 +T SAT + + + + + P Sbjct: 204 AILNTLPDPHRTWLFSATMPDEVASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGK 263 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 +++ L++ + L+ TK + E L+E G LH D+ +ER ++ Sbjct: 264 RLEGLVNVLLWENPEMG--LIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMN 321 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 R G LV N+ GLD+ VS V + G + + + GR R G+ Sbjct: 322 AFRQGRIPYLVATNVAARGLDVQGVSHVI-----QIGLPDNLETFVHRSGRTGRAGQEGR 376 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 IL KA+ K + I + + + LG + + + Sbjct: 377 NILVLTPREKGRFKAMLRASSMDLKWANVPDVAEIAKA--QRGLRESALLGGDEPDQEIQ 434 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + P D+ + L+ ++ L Sbjct: 435 AWADELLDMMA---PRDLVARLLESYVNGL 461 >UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JX58_SCHJY Length = 519 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 88/308 (28%), Gaps = 16/308 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEALAP 387 L + V + I L E + Sbjct: 194 LREIYDICVSTPMRLVHAIKSGLSLANVEFLVLDEADRLFEKNFVEQTDGVLSACTHPRI 253 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP----VATQVDDLLSEIRQRA 443 SAT + E + D + G D L RQ Sbjct: 254 CKCLFSATLPSTVEELAKTVAHDPLRIIVGQKDAATSTIEQKLLFVGNEASKLVIFRQMV 313 Query: 444 AINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + E RV++ A+ L L G V +H ++ ++R E++ R GE VL Sbjct: 314 SDGEIQPRVVIFVQDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVL 373 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + +LL G+D V LV D F +S S I IGR R + G+AI + K Sbjct: 374 IATDLLARGIDFNGVKLVINYD-----FPQSVHSYIHRIGRTGRAGHGGRAITFYTKEDS 428 Query: 560 SMAKAIGETERR--REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 K + + E + T Q K + ++ + R Sbjct: 429 EYLKLVAGVMKSSGCEVPEWIMALPKPTKQLKKKLKYHAPDRKRITTRSSYDRHKEVRKK 488 Query: 618 VEPDNVPM 625 Sbjct: 489 EAIQQAKK 496 >UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP Length = 398 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 13/272 (4%) Query: 332 DGLLVVDESHVTIPQIGGMYRGD--RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + +++ I + + + + E Q+ Sbjct: 120 NPHILICTPGRLIEHLEKFLKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELPKNKQS 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDLLSEIRQRAA 444 ++ SAT ++ + V ++ + ++ D Sbjct: 180 LFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIYLCNEF 239 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +LV T++ AE T + G YLH ++ +R+EI++ R G+ +L+ + Sbjct: 240 NGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIATD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 L GLD+P V LV D + + +GR AR +G+ I + + + Sbjct: 300 LASRGLDIPNVDLVLNYDLPHL-----AKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQ 354 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 I +++ + H + + K+ Sbjct: 355 KIETLVQQKFILLNFKLAHVLILEQTVDKMKQ 386 >UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIX8_9GAMM Length = 410 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 89/253 (35%), Gaps = 15/253 (5%) Query: 335 LVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 LVV IP + D L E L + + A QT+ VS Sbjct: 123 LVVATPGRLIPHLENRSIELDSLDLLVLDEADRILETGFKEALDQILTLCPEARQTLLVS 182 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + + + + G ++ I + T D L + + Sbjct: 183 ATLPTSVRKLAERILQEPEWVRVGQKREVEANIEQRIILSDDQTLKDKQLCWLLEN-ESY 241 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ +V +K A L ++ H + LH D+ R I R G +LV +L Sbjct: 242 DKAVVFCNSKTEARRLDGFIRYHKFKAALLHGDVQQKGRFATIEGFRKGTTKILVTTDLA 301 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ V LV + ++G I IGR R +GKA+ ++ +I Sbjct: 302 ARGLDIEGVDLVINTEIPRKG-----DLYIHRIGRTGRGGASGKAVSLISPAEWNLMSSI 356 Query: 566 GETERRREKQQKY 578 + R ++ + Sbjct: 357 ERYLKTRFRKSEI 369 >UniRef50_C6LWE2 ATP-dependent RNA helicase-like protein n=2 Tax=Giardia intestinalis RepID=C6LWE2_GIALA Length = 657 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 105/313 (33%), Gaps = 28/313 (8%) Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE-SHVTIPQIGGMYRGDRARKETLVEYGF 366 + + P + + LL R DR T+ + G Sbjct: 320 HELPPIHHSIQDPSNPDITHQIERQTLLFSATFPKEIKNLAMEFLRQDRLVSITVGQIGS 379 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 P+ L + L T Y++ + + D+ P L + V Sbjct: 380 SNPNLAQRVVLVERSNDKLRLLTEYITGQNADLNNMLTDVYGADKEQDP--SLSTVSSVA 437 Query: 427 PVATQVDDLL------------SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 ++ + ++ + + + I + +V T K A+ + Y ++ RV Sbjct: 438 GISEEFNEAMNATYPDSHAARHETLNKDGIIQYQTIVFTNFKSEADRIFRYFDDMRYRVA 497 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +H D+ ER ++ + G ++L+G ++ + GLD+P V LV D + Sbjct: 498 VIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNVRLVLNYDLP-----GNVDD 552 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 IGR R G A+ + A+ + R+ + P N+ + Sbjct: 553 YTHRIGRTGRAGRPGLAVTFVCP-DRDNVSALKDIRRK------MMDTKQPIPDWFNRTI 605 Query: 594 VDILALGQNIAKT 606 ++L+ +N Sbjct: 606 DEMLSDKRNAKNA 618 >UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=Magnoliophyta RepID=RH57_ARATH Length = 541 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 94/264 (35%), Gaps = 28/264 (10%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L P L + A + + ++ + + ++ ++ V Sbjct: 257 LWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCV---------- 306 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPV 428 + + SAT + E + + D V G + + + Sbjct: 307 ------VKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360 Query: 429 ATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 A + L +RQ A N VL+ +K A++L + L+ R +HSD+ ER Sbjct: 361 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERE 420 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + R GE VL+ +++ G+D ++ V D F S + I IGR+ R Sbjct: 421 NAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYD-----FPDSASAYIHRIGRSGRAG 475 Query: 547 N-GKAILYGDKITPSMAKAIGETE 569 G+AI + + + I T Sbjct: 476 RSGEAITFYTEQDVPFLRNIANTM 499 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 69/391 (17%), Positives = 121/391 (30%), Gaps = 38/391 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P ++ R I R + ++ E L + T D+ + Sbjct: 56 AAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARE---LAKHTHLDIATITG 112 Query: 300 L-GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 Y + E +S + L Y+ + + + + M A+ Sbjct: 113 GVAYMNHAEVFS--ENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQD 170 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP-GNYELEKSGGDVVDQVVRPTG 417 + R QT+ SAT G+ + + + D V Sbjct: 171 IEHIAGETRWR-----------------KQTLLFSATLEGDAIQDFAERLLEDPVEVSAN 213 Query: 418 L-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + LL + + R +V + +L +L E G Sbjct: 214 PSTRERKKIHQWYYRADDLEHKTALLVHLL-KQPEATRSIVFVRKRERVHELANWLREAG 272 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 YL ++ +R E I+ L G +VLV ++ G+D+P+VS V D R Sbjct: 273 INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMP-----R 327 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 S + + IGR AR G AI + + +G K + +E T Sbjct: 328 SGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPS 387 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K+ K K + K +P V+ Sbjct: 388 EKQTGKPSKKVLAKRAEKKKAKEKEKPRVKK 418 >UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KNF3_TOXGO Length = 652 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 33/293 (11%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +L + + H+ + + + + + G PS Sbjct: 347 TTPLRLVQFLRDGRVSLAQCRHIVLDEADKLLDLG---QLDEILAGCTFPS--------- 394 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA----TQVDDL 435 Q SAT L + + + V G + T + Sbjct: 395 -------LQVSLFSATLPPDVLRLADSLLHNPVHISIGSPNAAATSIEQELLFCTNEEGK 447 Query: 436 LSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L +R + VL+ +K A+ L L G V +H+D +R + + Sbjct: 448 LLALRTLHLTGKFVPPVLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDTVEAF 507 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R G+ VL+ +++ G+D V LV D F +S I IGR R G+AI Sbjct: 508 RRGQIWVLICTDVMARGVDFKNVELVINYD-----FPQSAAVYIHRIGRTGRAGRQGRAI 562 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + +++ ++ + E + K+ D+ Sbjct: 563 TFYTTADIPNLRSVVGVMQQT-STCEVPEWLQKVTKMTAKQKRDLQRRAPERK 614 >UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=Desulfovibrio RepID=B8J3P1_DESDA Length = 562 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 92/341 (26%), Gaps = 21/341 (6%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNR 375 G D L L+V + + R+ E L Sbjct: 145 YGGVGYKKQMDALRNGAQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPD 204 Query: 376 PLKFEEF-EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP------V 428 + + + T SAT + L+ SG + + + + + Sbjct: 205 MKEIQRYLPRRRIHTCLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVK 264 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 D L + ++ TK + L+ G L +D+ R + Sbjct: 265 PMDKDRALVRLL-ETENPASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAV 323 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + +R G+ LV ++ G+D+PE+S V + + S I GR R Sbjct: 324 LEKIRQGKLQYLVATDVAARGIDIPELSHVFLYEPP-----EDHESYIHRAGRTGRAGAA 378 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL------GQ 601 G I D + I + + + + + + + Sbjct: 379 GTVISLVDVMQRMELDRIAKHYKIGLIPLPLPTDEDVAHVAGTRLTAILEGRFRKLTGLE 438 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + + D + + L + E Sbjct: 439 RVRVERYAALARELAAEHDDEESVLLLAMLLDEAHQESLRE 479 >UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Yarrowia lipolytica RepID=PRP5_YARLI Length = 974 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 100/360 (27%), Gaps = 55/360 (15%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPS 370 G P L ++V I G + R + E Sbjct: 492 CAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDM 551 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-- 428 + + LK + QT+ SAT + + + + G ++ I+ R V Sbjct: 552 GFEPQVLKLTQSIRPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVA 611 Query: 429 -------------ATQVDDLLSEIRQRAAINE----------------------RVLVTT 453 ++ LL + + A + L+ Sbjct: 612 SEITQFVEVFQNEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAATPIPNPKCLIFV 671 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + A+ L + L + G +H + +R + I D + G VL+ ++ GLD+ Sbjct: 672 ERQESADSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVK 731 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 + LV D+ + +GR R G A+ + +A I + Sbjct: 732 GLGLVVNWDSPNH-----MEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIKSS 786 Query: 573 EKQQKYNE-------EHGITPQGLNKKVVDILALGQNIAKTKAKG-RGKSRPIVEPDNVP 624 E + + + G + + R R E D Sbjct: 787 GNAPPAPVQLMTERFEFKVRSGTEKRHMYGFSGKGLERLQDERDATREHERRAYEGDEAG 846 >UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW65_STRM9 Length = 900 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 65/457 (14%), Positives = 148/457 (32%), Gaps = 55/457 (12%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 VE + D +G+++ I + + ++ A Sbjct: 411 VEDIKH-DLESGRLMDRI-----------LVGDVGYGKTEVAMRAAFKAIENGYQCAILA 458 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 Q + + + G + R G+ + D L + +V + Sbjct: 459 PTTVLANQHFERCHKRFEDFGISVNNLS-------RLTGKNTDDVLDGLKNGKIDLVIGT 511 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 H + + ++G + R + +SATP Sbjct: 512 HRLLGDDVKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDI--------HLLTLSATPIPRT 563 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 L + + D + + +D + + Q D++ I + + + +V T + Sbjct: 564 LNLALLGIRDISLIQSSPMDRLPIITQKI-QEDEIKKVILKELSRDGQVFYITNNVKGMA 622 Query: 461 DLTEYLEEHGE---RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + + L++ + Y+H + E + I D G+FD+L+ ++ G+D+ + Sbjct: 623 EKQKSLKKLMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVENGIDITNANS 682 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + I + G + + Q GR R Y + G+ + + ++ + Sbjct: 683 IIIENYTSLGLSQ----IYQLRGRVGRGKRQG---YCYLLDSEYKSKKGKEKDKSLEKIE 735 Query: 578 YNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 G+ G + D+ G I K G D D+ K L+ +I Sbjct: 736 -----GVEGGGYLLSLEDLNIRGAGEILGEKQHG--------AIDMFGYDLYLKMLKNEI 782 Query: 637 HELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELFI 670 ++L+G ++ +N E + + + + + I Sbjct: 783 NKLKGEKVREFKNTEIDLLNNGYIPEEYIEKDERILI 819 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 73/486 (15%), Positives = 151/486 (31%), Gaps = 76/486 (15%) Query: 118 HIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLA 177 + + + + + + ++ ++ + D + V + IL+ L Sbjct: 63 DLVGVNIEILEFLNKNTKGILFLDINLALKIFF-DEFK--SKEFKVNEEYSRDEILKYLV 119 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 E Y + +G F +RG++IDI+P+ D+ +R++ FD +E + +F + + Sbjct: 120 ENGYKKEYTVLNKGEFAIRGDIIDIYPSNLDN-PIRLDFFDTILENIKIFSTYDQRSIEN 178 Query: 238 IPRFT------------------IYPKTHYVTPRERIVQAMEEIKEE----------LAA 269 I T I+ K + E ++++ L Sbjct: 179 IEEITVFGNVLSGMEREIVDMISIFSKGNIEIFLENKEFLEVKLEQMLMFDKDNEKVLKE 238 Query: 270 RRKVLLENNKLLEEQRLTQRTQFD------------------LEMMNELGYCSGIENYSR 311 R L+E LLE R R D + + E Y +E Sbjct: 239 RFNKLIEKGNLLEVSRSKDRNYQDEIKSKRERIEKKGIKYSNINQILEGDYVIHVEFGIG 298 Query: 312 FLSGRGPGEPPPTL-FDYLPADGLLVVDESHVTIPQIG------GMYRGDRARKETLVEY 364 G L Y D L + E I + +Y + + Sbjct: 299 IYMGAVNINDRDYLYIQYADNDKLYIPVEKLDRISKYMSTGIAPKLYSLGTKGFKRREKR 358 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-----------VDQVV 413 + + L + + T E E+ + + Sbjct: 359 IREDVEKFAQELINIQAKRKLVRKLPLIKDTLWQEEFEEKFSFNLTWDQQKAVEDIKHDL 418 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEH 469 L+D I+ + + + + + + T + E + E+ Sbjct: 419 ESGRLMDRILVGDVGYGKTEVAMRAAFKAIENGYQCAILAPTTVLANQHFERCHKRFEDF 478 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM--PEVSLVAILDADKEG 527 G V L S + +++ L+ G+ D+++G + L G D+ + L+ I + K G Sbjct: 479 GISVNNL-SRLTGKNTDDVLDGLKNGKIDLVIGTHRL-LGDDVKFKNLGLLIIDEEQKFG 536 Query: 528 FLRSER 533 E+ Sbjct: 537 VNAKEK 542 >UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacteria RepID=Q3BYG2_XANC5 Length = 453 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 65/391 (16%), Positives = 120/391 (30%), Gaps = 19/391 (4%) Query: 243 IYPKTHYVTPRER-IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + + + + + L R + + ++L L + ++ L Sbjct: 62 MLAARDLIATAQTGSGKTLAYALPLLLQRLQAPEQAPRVLGGLILVPTRELVAQVAQTLL 121 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKET 360 + + GE L +V+ + + R + Sbjct: 122 SLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLLDLVTHNALRLSQVSTLV 181 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---G 417 L E L + Q++ VSAT + + D + Sbjct: 182 LDEADRLLDLGFGAELDRILALLPAQRQSVLVSATFPAAIASLAKRRLRDPLRITHDAMP 241 Query: 418 LLDPIIEVRPVA---TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 P I R +A Q LL + + LV ++ A+ + E L + G Sbjct: 242 EQAPSITQRAIAVDAGQRTQLLRHLLLEHGWPQL-LVFVASRHGADKVAEKLSKTGIAAL 300 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH ++ R +R + + VLV +L G+D+ + V D RS Sbjct: 301 PLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGIDIDALPAVLNYDLP-----RSTVD 355 Query: 535 LIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 IGR AR +G AI + + + I E+R+ + + G P + Sbjct: 356 YTHRIGRTARAGASGVAISFVTADSAQQWRLI---EKRQGLRVPTSVIEGFEPTPVQAPA 412 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 D A G + G K + + D + Sbjct: 413 PD-HAPGAAVRAADDNGGIKGKRPSKKDKLR 442 >UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Helicobacter RepID=C5F1R4_9HELI Length = 1008 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 104/330 (31%), Gaps = 31/330 (9%) Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + L + V +H + + L + + + A Sbjct: 590 ILEGLKDGTIHAVVGTHALLN----------VSFKNLALIVIDEEHKFGVKQKERIKEIA 639 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRA 443 + +SATP L + + + V D LL E I + Sbjct: 640 QNTHLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKEYSDSLLKEVILREL 699 Query: 444 AINERVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V E + ++ LHS I E II + G F++L+ Sbjct: 700 RRGGQVFYIHNNISTINQKKEEILTILPHLKIAILHSQIQAQESENIIMEFAKGNFNLLL 759 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ G+ +P + + + +D G L Q GR R + Y S Sbjct: 760 CTSIVESGIHLPNANTILVGRSDCFGIA----DLHQLRGRVGRGSK-EGFCYFLIEDSS- 813 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 +I + ++R + N G D+ G +A+ Sbjct: 814 --SITQEAQKRLLALEKNAYLGSGGA---LAYHDLEIRGGGNLLGEAQSG-------HIK 861 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 N+ + + L++ I++L G + + N++ Sbjct: 862 NIGYSLYLRMLEEAIYQLSGNIKEEKANID 891 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/333 (13%), Positives = 98/333 (29%), Gaps = 46/333 (13%) Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 Q + L +K A +L ++ F + +D Sbjct: 19 EKYQNGLICLTKDKNDAQKLA-DVASFLG--------------IQSFVLEDLRAVFGEDL 63 Query: 114 SVNEHIEQMRLSATKAM-LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 + + L+ K ++ + + + L+ + G ++ R Sbjct: 64 RSYQEELREILNTLKNFYTTNSPKILFSPLQTLLNPMPKLEALE-GFSIAFGESLELREF 122 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 L Y + G +RG++ID+F ++ +R+ LF E+E + FD T Sbjct: 123 QETLLHFGYEFVELVEMSGEVSIRGDIIDLFLPNYEN-PIRLSLFCNEIESIRFFDVQTQ 181 Query: 233 QIV-STIPRFTIYPKTHYVTPRERIVQAMEEI--------------------------KE 265 I + I P + + + + +I K+ Sbjct: 182 LCFQEEIEKLEILPA-FFNLSAKSYEELLSKIQEANIENSLHYQGNLIAAYGLWFLEEKQ 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L N L + + E++ ++ IE + PT Sbjct: 241 NLLEIYPYLKAPNIQDLLDELLSFQEQNKELLKQILEHKSIEVSQNYEDFECAFRNIPTF 300 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 ++ + ++ ++ I Q G + + Sbjct: 301 LEFHKNKKITIIAKTESLIRQAGISLGEHKEYQ 333 >UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIE5_9CRYT Length = 498 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 28/274 (10%) Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 E SR P + + + + + S + + ++ + + + + Sbjct: 216 KEQESRTKRLDIAVSTPFRFAEICKSGIMNLKECSFIVLDEVDKLLDMGFSPQIDEIIAH 275 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL------ 419 + S Q + SAT N + + + + G Sbjct: 276 SNVISNG-------------KVQVVAFSATLPNNVKDLAESIMKYPIEVTVGHRLAASKT 322 Query: 420 --DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 +I V + +++ ++ ++ IN VL+ T +K A+ L + V +H Sbjct: 323 IKQELICVTKESGKLESF-RQLIKQGRINLPVLLFTNSKENAQKLFSKIVFDNLLVDMIH 381 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 SD+ +R I++ R G+ VL+ +L+ G+D V+ V D F ++ I Sbjct: 382 SDMAKTKRDNIVKKFRTGQIWVLICTDLIARGVDFKNVATVINYD-----FPQTSTIYIH 436 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 IGR+ R G A+ + K I + + Sbjct: 437 RIGRSGRAGRLGHALTFFTLNDLPKLKYIAKVMK 470 >UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y2B2_BRAFL Length = 672 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 111/333 (33%), Gaps = 35/333 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + ++ M L + L+ Sbjct: 357 TPGRLLDILHRKDVSLECVEVLVVDELDTM-----------------LHLGFREQVLEII 399 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVD 433 + QT+ SAT + + + V P+ + I ++ Sbjct: 400 DSLPSQRQTMMFSATIPQPIETLASSILNNPVYVLVGQASTPSPSVKQTILWVEENSKKR 459 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDL 492 L + ++ VLV ++ A+ L + + + R +H D ER + L Sbjct: 460 MLFTILQDPKHYQPPVLVFVDSRMGADLLADAIHKKCNVRALSMHGDKPQSERSAALNSL 519 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 GE DV+V +L GLD+ V LV + D S I IGRA R +G+A+ Sbjct: 520 LKGEVDVVVATGVLGRGLDLCRVRLVIVFDMPP-----SVNEYIHQIGRAGRLGSSGRAM 574 Query: 552 LYGDKITPSMAKAIGETERRREKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + + + +T Q N H + K+ + ++T+ Sbjct: 575 AFINNNNKGLFLDLFDTLHPLHMQMPSQLVNSPHLQQQRERRKRTQRARENVETSSRTEQ 634 Query: 609 KGRG-KSRPIVEPDNVPMDMSPKALQQKIHELE 640 G + + + + +Q+ + + Sbjct: 635 HGEKWAQQKHSNAAYMQRQRAKRGREQEGSKAK 667 >UniRef50_B0EBD5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0EBD5_ENTDI Length = 450 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 91/264 (34%), Gaps = 11/264 (4%) Query: 324 TLFDYLPADGLLVVDESHVT---IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + +L +V+ I + + + + F + + + K Sbjct: 140 RILHHLSGSPHVVIATPGKLVSLIDHLPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIR 199 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV--RPVATQVDDLLSE 438 + T SAT + + + D + TG + + + + + Sbjct: 200 SKFSKTVTTGLFSATTDSLIPQLPALGLADTKILITGERQKLSDNCDQTYIFMPNKVKHC 259 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 IN++ +V + E + + + LHS + + R + R GE Sbjct: 260 YLTYLCINKQCIVFCGSVLRTEVIFRMFKSMEIKATVLHSALPQIARENNLNSFRSGEAL 319 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV +L GLD+P+V LV D + I +GR AR G AI D+ Sbjct: 320 ILVATDLASRGLDIPDVPLVINYDVP-----HTAEDYIHRVGRTARANRKGLAITLVDEY 374 Query: 558 TPSMAKAIGETERRREKQQKYNEE 581 ++I + K+ K +EE Sbjct: 375 ESDRIQSIESQLGVQLKEYKVDEE 398 >UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPU2_DESBD Length = 741 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 99/319 (31%), Gaps = 17/319 (5%) Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L L++ + + G DR + E L + + + Sbjct: 138 LEDGAQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRGL 197 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIR 440 Q+ SAT + + + D V + ++ P + L+ I Sbjct: 198 QSAMFSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKII- 256 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TK ++ L G V + +D+ R E++ LRL + L Sbjct: 257 -EQENPASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFL 315 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ G+D+ E+S V + + + GR R G AI + + Sbjct: 316 VATDVAARGIDIHELSHVFQYQPP-----QDHEAYVHRTGRTGRAGAAGVAISFVSGMEE 370 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + I + +Q + + + V + A + + + + V Sbjct: 371 IELEQIAKKFSIPMVEQPLPADEELETLISQRAVFLLEARLRKADNIQKERMQRFMRTV- 429 Query: 620 PDNVPMDMSPKALQQKIHE 638 + D S L + E Sbjct: 430 GELAANDESRALLAMLVDE 448 >UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase (Fragment) n=4 Tax=Cryptosporidium RepID=Q5CWJ1_CRYPV Length = 738 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 94/297 (31%), Gaps = 29/297 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L V S +T+ + M + + Sbjct: 197 CPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKI-----IDCVRKETGDGET 251 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPT----------------GLLDPII 423 Q + SAT + + D V + + Sbjct: 252 HSRQNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLA 311 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + L I A IN + ++ T TK+ A ++ E + + LH DI Sbjct: 312 IQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIAMR-SEISKMCQVLHGDIQQN 370 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R ++ + G + LV ++ GL + +V++V + R + I GR Sbjct: 371 QREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVI-----QLAPPRDIDTYIHRSGRTG 425 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R G AI++ + +I + + ++ + I + + D+L Sbjct: 426 RAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSIGKDLLEK 482 >UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLD4_FIBSS Length = 463 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/359 (13%), Positives = 98/359 (27%), Gaps = 43/359 (11%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL-----GYCSGIENYSRFLSGRGPGEP-- 321 R + L+ + L + Q + E +++ G +Y + G Sbjct: 93 VRDHPYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRSGVHVI 152 Query: 322 ---PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D++ + ++ + + + M L K Sbjct: 153 VATPGRLMDHIQRGNVDLLSIRDLVLDEADEM-----------------LSMGFYPDMQK 195 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVV--------DQVVRPTGLLDPIIEVRPVAT 430 ++ A SAT + L+ V Sbjct: 196 IRKYLPKAISCTMYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVME 255 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + + E ++ KR L + L +G V L D+ R + + Sbjct: 256 KDSMTIKVL--EYYNPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLN 313 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R + +L+ ++ G+D+ V+ V + D + GR AR G Sbjct: 314 AFRDKKLKILICTDVAARGIDVDHVTHVIVYD-----HPADHEVYVHRSGRTARAGRSGL 368 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + + I + + V + + ++ KA Sbjct: 369 CISLITPVEEIDLRQTAVDFGINFIKMDPLTNEEIAKKVSERTKVRLEEVRKHFGGQKA 427 >UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Eukaryota RepID=B6KQ71_TOXGO Length = 1544 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 107/360 (29%), Gaps = 31/360 (8%) Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSA 371 G + + ++V I G + R L E Sbjct: 1080 CYGGAGIGSQLGAIKRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFG 1139 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIE 424 + + QT SAT + + + V G + +E Sbjct: 1140 FEPQVTSIIASSRPDRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVE 1199 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V + LL + + + V++ + A++L L ++G + LH D + Sbjct: 1200 VMEEERKFFRLLQLLGEWQE-HGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTD 1258 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R I++ + G +L+ ++ GLD LV + IGR R Sbjct: 1259 REFTIQEFQDGVRTLLIATSVAARGLDCKHCVLVIN-----MTCPNHIEDYVHRIGRTGR 1313 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQ--QKYNEEHGITPQGLNKKVVDILALGQ 601 G A + K A + + + + Q ++ Q N + + G Sbjct: 1314 AGRIGVAYTFLTKEDADKADDLEKALTQSGQAVPQALSDLSAQYKQECNLGMHEKKKKGG 1373 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + S + + QQ EL + A++ EF +A + + Sbjct: 1374 GGFGGRGFSFSASEKSRQ---------QRERQQAKKELGLE--KDAEDEEFLDADLLAPE 1422 >UniRef50_Q2R377 CarD-like transcriptional regulator family protein, expressed n=14 Tax=Magnoliophyta RepID=Q2R377_ORYSJ Length = 832 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/380 (13%), Positives = 114/380 (30%), Gaps = 29/380 (7%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ Q E + Sbjct: 299 TPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSE-----RFS 353 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + SG E L + L ++ +H + + + + Sbjct: 354 NYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQK 413 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + + + +SATP L + D + T + + Sbjct: 414 FGVQQKEKIASYKASID--------VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVA 465 Query: 424 EVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDI 480 V+ + LS I+ A +V + +D+ ++L++ V H Sbjct: 466 VRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKK 525 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + GE +LV +++ G+D+P + + + A+ G + L Q G Sbjct: 526 VSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQ----LYQLRG 581 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R+ G A L+ + + + R EEH QG + D+ Sbjct: 582 RVGRSGTEGFAYLFYTDKS-----LLSKIATDRLGAI---EEHSDLGQGFHVAEKDMGIR 633 Query: 600 GQNIAKTKAKGRGKSRPIVE 619 G + + + ++ Sbjct: 634 GFGSLFGEQQSGDVANVGID 653 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 56/154 (36%), Gaps = 6/154 (3%) Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 Q + ++ DV + +D +I + + + I + Sbjct: 268 MDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISA 327 Query: 446 NERVLVTTLT----KRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V T K+ + ++E + +V E+ E+I +R G+ ++ Sbjct: 328 GFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHII 387 Query: 501 VGI-NLLREGLDMPEVSLVAILDADKEGFLRSER 533 VG +L E + + L+ + + K G + E+ Sbjct: 388 VGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEK 421 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 16/265 (6%) Query: 329 LPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +VV + TL E L N +K Sbjct: 116 LNSGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKR 175 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIR 440 Q + +AT + S + + T +D V ++ L+ + Sbjct: 176 QNFFFTATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFL- 234 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TKR ++L L+E G + D+ +R ++ + + +++ Sbjct: 235 -DFKKPTASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNII 293 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V +++ G+D+ V LV D +E IGR R G+AI + K Sbjct: 294 VATDVMARGIDVSHVDLVFNFDLPEE-----IEYYTHRIGRTGRGTRIGQAISFVKKPEV 348 Query: 560 SMAKAIGETERRREKQQKYNEEHGI 584 I + K+ + + Sbjct: 349 GYIYKIMTETKSIIKEISIPSKEHL 373 >UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6Y7_PHYIN Length = 847 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 111/351 (31%), Gaps = 17/351 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVT--IPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 GE F+ + ++ ++V + Q + E + Sbjct: 143 GEGMDQQFEAIASNPDVLVATPGRLMHLLQEIPDFNLKAVEYVVFDEADRIFEMGFAEQL 202 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVA 429 + + + QT+ SAT ++ + + D + + + I E Sbjct: 203 QEILKNMPTSRQTLLFSATLPKALVQFARAGLSDPELIRLDVENKISENLKMAFFTVRSL 262 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L +R+ ++ +V T+ E L L + + D+D R + Sbjct: 263 DKPALFLYMVREFLPKGDQTIVFAATRHHVEFLHALLAANHIEASCAYGDMDQASRKINL 322 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 R + ++L+ ++ G+D+P ++ V F + + + +GRAAR G Sbjct: 323 GKFRAKKTNLLIVTDVAARGIDIPLLNNVLNY-----SFPPTAKLFVHRVGRAARAGRSG 377 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ--NIAKT 606 A + D + RR + E G P L+ V+ + G N Sbjct: 378 TAFSFVDPDETPFMVDLHLYIGRRLEDSSPEESAGTKPYSLSTMRVEDVHYGAFPNELID 437 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + P P+ + +++ E A + Sbjct: 438 QENEALQETVRSHPQVSPLVKVCDNAYKAYARTRADPSKNSIRRGKELAVK 488 >UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleostomi RepID=B1H1W5_XENLA Length = 638 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 103/301 (34%), Gaps = 35/301 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L + + D + + D + + + M L + L Sbjct: 349 TPGRLLEIINQDCVNLGDLKILIVDEADTM-----------------LKMGFQQQVLDIL 391 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 E + QTI VSAT + + D V G + I+ ++ Sbjct: 392 EHASHDHQTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQIVLWVEEPSKKK 451 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDL 492 L + VLV + A+ L++ + + G +HSD +ERM+I++ L Sbjct: 452 KLFEILNDSKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGL 511 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 GE+DV+V +L GLD+ V LV D S + IGRA R G AI Sbjct: 512 LQGEYDVVVSTGVLGRGLDLVNVKLVVNFDMPP-----SMDEYVHQIGRAGRLGHRGTAI 566 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + +++ +R + + ++ + G+ + G Sbjct: 567 TLIN----RNNRSLFWDLVKRVQPTGSLLPPQLLNSPYLQEQKKVDERGRRDKEKVVTGD 622 Query: 612 G 612 Sbjct: 623 Q 623 >UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME Length = 782 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 103/337 (30%), Gaps = 29/337 (8%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + +V+ I I + D L E L + + Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDDLLS 437 QT+ SAT + + + + I + +L+ Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILA 395 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R ++ +V TK+ A L L G R LH ++ +R+E ++ + + Sbjct: 396 SLICR-TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 DVL+ ++ GLD+ V V + I +GR AR G ++ + Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPI-----TTEHYIHRVGRTARAGRAGISVSLAGE 509 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K I + K + E + K+ + QNI + R Sbjct: 510 KERKIVKDIIKNAESTIKNRIIPPE---IIEKYRNKLTSLEPEIQNILDEEQ----AERQ 562 Query: 617 IVEPDNVPMDMSPKALQQKIHELE----GLMMQHAQN 649 + + + K L Q + ++ Sbjct: 563 LAKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKD 599 >UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A36 Length = 483 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 102/355 (28%), Gaps = 13/355 (3%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + P + + + L + + + ++ ++ Sbjct: 37 EVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEENLPQALVLEPSRELAVQVSNEL 96 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKET 360 + G + + G + +VV + I + R Sbjct: 97 FHIGRRKRLKVPAVFGGFPI-DKQMRTIKQKSHIVVGTPGRVMDLIQRECLKLAGIRYLV 155 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTG 417 + E L + + + SAT + D V+ P Sbjct: 156 IDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSATLDEKVRLLVDEYMADAVMIAPEPDA 215 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 +P I ++ +++ E ++ T+ M L + L+ Sbjct: 216 EEEPAISQVVYRADPEEKYDLLKRTLILENPESCMIFCGTREMVNVLLQKLKRDRIFCGM 275 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +H +++ ER++ + R G F L+ ++ G+D ++ LV D F + Sbjct: 276 IHGEMEQRERLKTVDAFRRGGFRFLIATDVAARGIDFDKIDLVVNYD-----FPGGRETY 330 Query: 536 IQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + IGR RN NG+A+ + M + R E + Sbjct: 331 VHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRELSVTTCPEPDEEATKAF 385 >UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF9CE Length = 1357 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 69/377 (18%), Positives = 121/377 (32%), Gaps = 40/377 (10%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R + E + + K Sbjct: 827 LKRGCEIVVATPGRLIDVLTTSNGKITNLKRITMVVIDEADRMFDLGFEPQIAKILATTR 886 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + V G + +IE+R +T++ LL Sbjct: 887 PDKQTVLFSATFPKNVENLAKKLMRHKPVEVVVGARGQACTNITQLIEIRDESTRLFRLL 946 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 E+ +V++ + + L + L LH+ +D +R+ + D R G Sbjct: 947 -ELLGIYTEQGQVIIFVDKQIEVDFLYQELRSRYYIPTILHAGVDAEDRVNNLLDFRKGI 1005 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 + +L+ +L GLD+ V LV I IGR R G A+ + Sbjct: 1006 YKILIATSLSSRGLDVKNVVLVVNYKCPNH-----IEDYIHRIGRTGRAGNKGTAVTFIG 1060 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + +R ++ K EE + KKV A N A + KG Sbjct: 1061 PEEDKYSLDLIKALKRSDQ--KVPEELLRMGEEFKKKVKMGEAKIYNNANMQGKGFNFDE 1118 Query: 616 PIVEPDNVPMDMSPKALQ----------------QKIHELEGLMMQHAQNLEFEE---AA 656 + N K L +K E + L F++ Sbjct: 1119 EERDKMNQMKYEQKKFLALQMGLDIEERDDDFVFKKAQEESAKDKKDKDELTFQQKLHIV 1178 Query: 657 QIRDQLHQLRELFIAAS 673 + +D+ +RE + + Sbjct: 1179 KTQDEYKDIREELFSKA 1195 >UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammaproteobacteria RepID=Q4KGF7_PSEF5 Length = 473 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 71/381 (18%), Positives = 128/381 (33%), Gaps = 29/381 (7%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 LL + L Q+T ++E ++ + S ++G + + +P +++ Sbjct: 104 LLPTRELAQQTLKEVERFSQFTFIK-----SGLITGGEDFKVQAAMLRKVPD---ILIGT 155 Query: 340 SHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT--- 395 + Q+ G L E L + + QT+ SAT Sbjct: 156 PGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLFSATTGG 215 Query: 396 -----PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 L ++ V + I + +++ + ++ + Sbjct: 216 SGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN-ETYQKAI 274 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T T+ MA+ + L + LH + D +R I L+ G +LV ++ GL Sbjct: 275 VFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARGL 334 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ + LV D RS + IGR R +G AI ++ +I Sbjct: 335 DVDGLDLVINFDMP-----RSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYL 389 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 ++ +++ E G G K A+G KT AKG K P P Sbjct: 390 KQSFERRTIKEVKGTY-SGPKKVKASGKAVGVKKKKTDAKGDKKKAVAKAPTKRKTANRP 448 Query: 630 KA----LQQKIHELEGLMMQH 646 K+ Q + L+ Q Sbjct: 449 KSDSLVSQDGLAPLKRRKPQA 469 >UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Paramecium tetraurelia RepID=Q6BFH3_PARTE Length = 664 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 105/338 (31%), Gaps = 22/338 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L R + L+ NK L + +++ E EN R + G Sbjct: 84 LERIRGLGLKQNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYR-IYSIYGGTDLRNQI 142 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEF-EA 384 D + +VV + + ++ E L K + Sbjct: 143 DQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE 202 Query: 385 LAPQTIYVSATPGNYELEKSGGDV------VDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 Q + SAT ++ E S + ++ + R ++ + + L Sbjct: 203 RKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGA 262 Query: 439 IRQ----RAAINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLR 493 I + R ++ TKR ++ L + LH DI +R + Sbjct: 263 IGDVVSVYGGRHARTIIFCETKRECNEI--ILHSKLPAETQPLHGDIPQQQRTVTFEGFK 320 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+F LV N+ GLD P+V L+ + K+ S I GR R +G I Sbjct: 321 NGKFKCLVATNVAARGLDFPQVDLIIQCNPPKD-----IESYIHRSGRTGRAGKDGVCIT 375 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + K + + + + + + + I Sbjct: 376 FYSKKDMGLIERVERVAKIKFIKISAPQHQDIIKASSR 413 >UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q965K2_CAEEL Length = 970 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 93/335 (27%), Gaps = 21/335 (6%) Query: 329 LPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I G + R L E + + +K Sbjct: 424 LKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR 483 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + V G + + + LL Sbjct: 484 PDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLE 543 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEIIRDLRLGE 496 + +V + A+D+ + L G V LH ID +R I D + G Sbjct: 544 LLGMYYEEGSS-IVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGV 602 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 VLV ++ GLD+ + LV D + +GR R K Y Sbjct: 603 IKVLVATSVAARGLDVKNLILVVNYDCPNH-----YEDYVHRVGRTGRAGR-KGYAYTFV 656 Query: 557 ITPSMAKAIGETERRREKQQ-KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + K GE R E K + + ++ + +G G Sbjct: 657 LPEHQEKMAGEICRAFETAGCKPPADLKAMFERFKSEMA-AEGKEVKLGGKGFEGSGYKY 715 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 E + L + + L Sbjct: 716 DEGEAEADANKKRMTRLVHGMEAGGDDDDDLEEQL 750 >UniRef50_B7G370 Predicted protein n=3 Tax=Bacillariophyta RepID=B7G370_PHATR Length = 491 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 136/423 (32%), Gaps = 58/423 (13%) Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE- 220 + D + +RL +L R G+ + + +++ V+ FDE Sbjct: 52 RINSKKDSDELTKRLQKLALER--------QKASTGDRLKVIQSDTSSHLSSVKTFDELN 103 Query: 221 -----VERLSL--FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK--------- 264 ++ + FD + +PR P + + + Sbjct: 104 LPKHLLDAVYAMGFDRPSAIQEEALPRILADPMRNLIGQAQAGSGKSAAFTLGMLYRIVV 163 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN----YSRFLSGRGPGE 320 + A + + + + L Q + + + M L C I N + + Sbjct: 164 DSPATTQALCVTPTRELAIQIVDKAVKPLAANMKGLKICLAIANTFIDRGKTVDAHLVVG 223 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + + M R +LV P+ Sbjct: 224 TPGKVSDFLKRKNLNPRTIKVFVLDEADHMVEEGGHRANSLVIRKVMPPTC--------- 274 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDV--VDQVVRPTGLL--------DPIIEVRPVAT 430 Q+++ SAT ++ + V D+++ G ++ R Sbjct: 275 -------QSLFFSATFPPEVVQFAEKMVEKPDKILIEDGPEFLVVDNIRQLWVDTRNYEG 327 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L++I +I + +V T A+ + L G LHS + R + Sbjct: 328 GKIEFLADIYSLMSIGQS-IVFVGTVVQADKVYNTLTSSGYTCSVLHSKVGPENRDTTME 386 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNG 548 R GE +VL+ N+L G+D+ V LV D + + + IGR R G Sbjct: 387 AFRNGESNVLITTNVLARGVDVDNVGLVINYDVPIDKDGNPDHETYLHRIGRTGRFGRKG 446 Query: 549 KAI 551 AI Sbjct: 447 TAI 449 >UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=Lactobacillales RepID=A5VIX6_LACRD Length = 457 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 69/405 (17%), Positives = 127/405 (31%), Gaps = 19/405 (4%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L + ++ ++ T + ++ N + + + G Sbjct: 54 KTHAFLLPIFSKIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTD 113 Query: 322 PPTLFDYLPAD-GLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKF 379 D L LV+ + I A+ + E L + + Sbjct: 114 KQHQVDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQI 173 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLL 436 Q + SAT + + VV ++P ++ ++T+ D Sbjct: 174 ASHFPNDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRN 233 Query: 437 SEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 I + + LV TK A LT+YLE G +V +H ++ R +R +R Sbjct: 234 QLIYRLLTLGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRD 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 E+ +V +L G+D+ VSLV D + + +GR R NG Sbjct: 294 LEYQYVVATDLAARGIDIDGVSLVINDDLPTD-----LEYFVHRVGRTGR--NGMKGTAI 346 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 P+ I + E R K ++G ++ QN KG K Sbjct: 347 TLYEPAEDDLIAKLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKK 406 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 +++ I E E + + +A + R Sbjct: 407 TKKKVKPGYKKR-----IKKAIKEDEQQKRKLELRHKIRKAKRAR 446 >UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5K6D1_9ALVE Length = 733 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 68/402 (16%), Positives = 118/402 (29%), Gaps = 33/402 (8%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 +LA R +++ + T+ + + Y G + G Sbjct: 264 HADLADRPAPT-KDHPACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYE 322 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 D +VV I + M L E L +N+ + Sbjct: 323 QFKDLRKGTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQ 382 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--------IEVRPVATQVD 433 QT+ SAT + + D V G +V V + D Sbjct: 383 RVRPDRQTMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDD 442 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVER 485 L + + +VL+ K A +L + E LH D D +R Sbjct: 443 KFNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDR 502 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 M+I+ D R + VLV ++ GLD+P V V D + + +GR R Sbjct: 503 MKIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDM-----SNTLTTHTHRLGRTGRA 557 Query: 545 NVNGKAILYGDKIT--PSMAKAIGETERRREKQQK---YNEEHGITPQGLNKKVVDILAL 599 G A + MA + E + ++ + P +++ A Sbjct: 558 GHTGHATTLLVRKDNSAKMAAELVEFMEKSKQAVSSALMDFALEFPPFAAARELGHSAAK 617 Query: 600 G---QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 G +A + G ++ + K + E Sbjct: 618 GLRRAAVAGGPQQRHGLGYSEARGTSMSSGVGKKFISSHSQE 659 >UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia japonica RepID=A4V6K8_DUGJA Length = 515 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 116/412 (28%), Gaps = 48/412 (11%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN------- 277 FD L Q++ + + M+ EE+ K E Sbjct: 122 HTFDILNRQLIDILGSAETGSGKTIAYLAPLLNNIMKHYPEEMMNELKQNDEELQYPLLL 181 Query: 278 -----NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS----GRGPGEPPPTLFDY 328 +L+ + +T L + + G++ S+ P L D Sbjct: 182 VLAPTRELVNQITSVAKTLLKLTHLRSVSVIGGVDARSQINDASRGCHALIATPGRLKDL 241 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + I + M + + Sbjct: 242 TDRGIFSLKYCNKLVIDEADRMLDMGFEPQIREIINN---------------LPSVSKRH 286 Query: 389 TIYVSATPGNYELEKSGGDVV---------DQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 T SAT + + + + IE + T+ D + Sbjct: 287 TSMFSATFPKSVMSLASKLMKPNFGEITVGKNSGTNEACIPDSIEQEFILTESDSIFRNC 346 Query: 440 RQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 N++ +V K + + + + LH D+ +R + Sbjct: 347 FDFLQNNNKKTIVFCNKKMDVDIFYRFSTKKNITIAKLHGDLTQRQRDYEFDLFKNNRTQ 406 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ G+D+ ++ V G + I +GR R GK+I + D+ Sbjct: 407 ILVATSVAARGIDVSDIECVIN-----LGLPVNLDDYIHRVGRCGRMGRPGKSITFVDQF 461 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 PS++ + + R EK K E + ++ VD + + Sbjct: 462 NPSIS-TLNDVRRMLEKTGKKVPEFMVEMNKNDRSSVDTYGSRTRNSDNHYR 512 >UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteria (class) RepID=A4AFV6_9ACTN Length = 757 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 11/250 (4%) Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +++ I G + + L E + + Sbjct: 495 LTRGVDVIIATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGG 554 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAA 444 Q + SAT +VD V D I+ + + + D + I+Q +A Sbjct: 555 QKLLFSATLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVLLIEQRDKRAIIKQLSA 614 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + LV T T+ AE++ E+L G LH D++ R ++ L G+ +VLV + Sbjct: 615 GTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATD 674 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 + G+ + ++SLV DA +E ++ + GR R GKA I + + Sbjct: 675 VAARGIHVDDISLVIQADAPEE-----YKTYLHRAGRTGRA--GKAGTVVTLIPRNRRRK 727 Query: 565 IGETERRREK 574 + E R E Sbjct: 728 MDELLGRAEI 737 >UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=Theileria parva RepID=Q4MZI4_THEPA Length = 894 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/311 (15%), Positives = 96/311 (30%), Gaps = 23/311 (7%) Query: 325 LFDYLPADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + L +VV I G + R L E + Sbjct: 533 QLNALKRGAEIVVGTPGRLIDVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIV 592 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 QT SAT + +V + G +D + V ++ Sbjct: 593 GNIRPDRQTALFSATFPLMIENLAKKILVKPLQIVVGQRGKSASQVDQHVVVLNDDKKLL 652 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + + +++ T+ +E L L +G LH +D +R + D R Sbjct: 653 KLLKLLGEWHEHGN-IIIFVNTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFR 711 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ +L+ ++ G+D+ V LV A + +GR R G + Sbjct: 712 EGKKTILIATSIAARGIDVKSVVLVINYAAP-----DHFEDYVHRVGRTGRAGTIGTSYT 766 Query: 553 YGDKITPSMAKAIGETERRREKQ-----QKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + + I + R ++ + ++ H T G + G +++ Sbjct: 767 FLTPEEAAKSHDIIKALRLASQEVPKELLQLSQAHLATMDGKLSRGRGFGGKGFKFTESE 826 Query: 608 AKGRGKSRPIV 618 + + R Sbjct: 827 QSRQQQERKRA 837 >UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12 Tax=Gammaproteobacteria RepID=B3PER7_CELJU Length = 477 Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 111/370 (30%), Gaps = 35/370 (9%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAM----------------EEIKEELAARRKVLLE 276 + V + P P R + + +++ L R Sbjct: 42 RAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQQLLEKPRATQPG 101 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + L + + + + + + + + ++ G + + L A ++ Sbjct: 102 HTRALVLAPTRELVEQVADNLQQYAHFTSLT-----IAAVYGGVKHSSQANKLQAGLDVL 156 Query: 337 VDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + G + L E L K PQ ++ SAT Sbjct: 157 VATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKPQILFFSAT 216 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVDDLLSEIRQRAAINERV 449 + + + + + + + +L E+ + +V Sbjct: 217 LTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTHNW-FQV 275 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V + T+ A+ L L+E +HS+ R +++ + G+ VLV + G Sbjct: 276 MVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATEVAARG 335 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+ + V LD + +GR R G AI I + Sbjct: 336 LDIQGLDYVVNLDLPFF-----IEDYVHRVGRTGRAGSKGIAISLVSASDEPKVALIEKA 390 Query: 569 ERRREKQQKY 578 + K+ K Sbjct: 391 IGTKIKRVKI 400 >UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1N6E2_9GAMM Length = 475 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 84/267 (31%), Gaps = 28/267 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L DYL + + + I + M + G Sbjct: 230 TPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRG--------------- 274 Query: 381 EFEALAPQTIYVSATPGNYELEKSGG--DVVDQVVRPTGLLDPIIEVRPV----ATQVDD 434 E QT SAT + S +QV + + TQ D+ Sbjct: 275 TPEKSIRQTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDN 334 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L E ++ + ++ + DL + L + G + L ++ +RM+ + + Sbjct: 335 ALIEYLEKENTG-KSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKS 393 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + VLV ++ G+ + ++ V + + IGR R +G AI + Sbjct: 394 EDGAVLVATDVAGRGIHVDGITHVFNYNLP-----DDPEDYVHRIGRTGRAGESGTAITF 448 Query: 554 GDKITPSMAKAIGETERRREKQQKYNE 580 D+ + ++ +Y Sbjct: 449 IDEYEAYGLMDLESYLGKKVSTDQYQS 475 >UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa group RepID=Q7KK34_DROME Length = 641 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 103/337 (30%), Gaps = 29/337 (8%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + +V+ I I + D L E L + + Sbjct: 276 LRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDDLLS 437 QT+ SAT + + + + I + +L+ Sbjct: 336 RQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILA 395 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R ++ +V TK+ A L L G R LH ++ +R+E ++ + + Sbjct: 396 SLICR-TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQI 454 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 DVL+ ++ GLD+ V V + I +GR AR G ++ + Sbjct: 455 DVLIATDVAARGLDIVGVKTVINFVMPI-----TTEHYIHRVGRTARAGRAGISVSLAGE 509 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K I + K + E + K+ + QNI + R Sbjct: 510 KERKIVKDIIKNAESTIKNRIIPPE---IIEKYRNKLTSLEPEIQNILDEEQ----AERQ 562 Query: 617 IVEPDNVPMDMSPKALQQKIHELE----GLMMQHAQN 649 + + + K L Q + ++ Sbjct: 563 LAKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKD 599 >UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianus RepID=C7JD45_ACEP3 Length = 400 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 102/352 (28%), Gaps = 39/352 (11%) Query: 229 PLTGQ---IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 PL+ + + P V E++ + ++ + V Sbjct: 60 PLSQKLLKSRKPRFVLVLVPTRELVLQVEKVFRTCLGESKKGQKQTPVT----------- 108 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + + ++ R P L D++ + + ++ + Sbjct: 109 -------LVPLFGGSDRAEQEHFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLD 161 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + ++ +E LPS L + E+L T+ + Sbjct: 162 EGDRLF--SPEFQEDTETLLSYLPSMRQTLVLSATQPESLKS-TLLNLLHKPVEISIEQA 218 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + LDP TQ + E RA R +V TK A+ L Sbjct: 219 PQKRGPIRQAALFLDP--------TQKPGFIKEFFSRAPK-MRSIVFVRTKAEADQLAAL 269 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L++ LH DI +R + G +LV ++ GLD+P V V D Sbjct: 270 LKKARLAAAPLHGDIAQDKRTSTVASFESGRLFILVATDVAARGLDVPSVKQVINYDVP- 328 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 + + IGR R G A+ + I + + Sbjct: 329 ----DQPETYLHRIGRTGRGGEKGSALTLCTMDDRQSLRQIEVGAHVKLRII 376 >UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3 Tax=Trypanosomatidae RepID=C0LEJ8_LEITA Length = 545 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 84/270 (31%), Gaps = 39/270 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + S + + + + Sbjct: 218 CPGRLKDFLDGGEVSLRNLSFLVFDEADRLLDMGFQVHLDEI---------------MAY 262 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQ------------VVRPTGLLDPIIEVRPV 428 A PQT+ SAT E + D + + +I R Sbjct: 263 LDSASHPQTMMWSATWPESVQEMVRKYLSDDRVLIRAGTAGAGLQVNEHIKQELIFCRTF 322 Query: 429 ATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEH-GER---VRYLHSDIDT 482 +++ L + + +++++ + E+ G V +H + Sbjct: 323 TERIEKLGLLVEDGTIDDNSDKLIIFVERQADTENTARAFSHRLGIDTRYVGAIHGGLSQ 382 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R ++ + + +LV ++ GLD+P+V+ V A ++ S IGR Sbjct: 383 RQRDRVMSMFKNNQIRLLVATDVASRGLDIPDVTCVVNFQAP-----KTIDSYCHRIGRT 437 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERR 571 R G A + + +A + R Sbjct: 438 GRAGRTGTAYTFLSEEDGGLATELVNYLTR 467 >UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H4C0_CHAGB Length = 602 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 78/254 (30%), Gaps = 14/254 (5%) Query: 329 LPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +++ I R R + E L A Sbjct: 252 LQKGCDILIASPGRLIHFINKPETLTLRRVRYMVIDEADEMLMDDWSEELTTILSGGARD 311 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 +++ T + ++G + + + + L+ I+ Sbjct: 312 LAQTHLAETHVRLRVGRAGS--------SHANIKQNVIYVDPSLKKQALIDLIKSL--PP 361 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 R ++ +KR AE++ ++L G +H D + +ER +R R G++ +L+ + Sbjct: 362 TRTIIFVNSKRAAEEVDDFLFNLGMPCTSMHGDRNQLEREAAMRGFRGGKWPILIATGVT 421 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 G+D+ V V D IGR R G A + +A + Sbjct: 422 ARGIDVRNVMHVINYDLPSM-EYGGIEEYTHRIGRTGRIGHRGLATSFYSDRDEPIASVL 480 Query: 566 GETERRREKQQKYN 579 T ++ Sbjct: 481 TRTLMETHQEIPDF 494 >UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Tax=Dictyostelium discoideum RepID=DDX27_DICDI Length = 783 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 93/305 (30%), Gaps = 29/305 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV--EYGFRLPSALDNRPLKFEEFEALA 386 L +V+ I + + E L+ E L + K E Sbjct: 308 LRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTN 367 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA---------TQVDDLLS 437 QT+ SAT + + + + L + + +L Sbjct: 368 RQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILL 427 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R ++ +K+ L + LH ++ +R + ++ R G+ Sbjct: 428 SLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQV 487 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 + L+ ++ GLD+ V V + + + I +GR AR +GK+ + Sbjct: 488 NYLLASDVASRGLDIIGVKTVINYNMP-----NNMANYIHRVGRTARAGMDGKSCSFITD 542 Query: 557 ITPSMAKAIGETERRREK------------QQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + K I R + K + + E + +++ + Sbjct: 543 NDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKT 602 Query: 605 KTKAK 609 KA+ Sbjct: 603 LDKAE 607 >UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA Length = 544 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 85/276 (30%), Gaps = 39/276 (14%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D+L + + + S + + + + Sbjct: 212 CDALVACPGRLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQVHLDEI------------ 259 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ------------VVRPTGLLDPI 422 A PQT+ SAT + + D + + + Sbjct: 260 ---MAYLDSASHPQTMMWSATWPESVQAMARKYLSDDRVLIRAGTAGAGLQVNERIKQEL 316 Query: 423 IEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEH-GERVRY---L 476 I R +++ L S + + +++++ + E+ G RY + Sbjct: 317 IFCRTFTERIEKLGSLVEDGTIDDNKDKLIIFVERQADTENTARAFSHRLGIDTRYVGTI 376 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H + +R ++ + +LV ++ GLD+P+V+ V A ++ S Sbjct: 377 HGGLSQRQRDRVMSMFKSNHIRLLVATDVASRGLDIPDVTCVVNFQAP-----KTIDSYC 431 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 IGR R G A + + +A + R Sbjct: 432 HRIGRTGRAGRTGTAYTFLGEEDGGLATELVNYLTR 467 >UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 Tax=Entamoeba dispar SAW760 RepID=B0ET33_ENTDI Length = 406 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 98/300 (32%), Gaps = 23/300 (7%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV----EYGFRLPSALDNRPLKFEEFEA 384 L ++V + I + + ++ E L N E Sbjct: 114 LAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLP 173 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLL 436 T+ SAT + + V L P + LL Sbjct: 174 SQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRDGYLL 233 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S +++ + +++ T+ L L + G LH + +R+ + + G+ Sbjct: 234 SILKE--TEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGK 291 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +LV ++ GLD+P V +V D E + I +GR AR +G AI Sbjct: 292 RGILVATDVASRGLDIPNVDIVINYDCPLE-----PKDYIHRVGRTARAGKSGYAITLVT 346 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGL---NKKVVDILALGQNIAKTKAKGRG 612 + + + + I ++ + K N+ I Q L +K + L GQ + Sbjct: 347 QYSIELYQRIETMIEKKLNEYKANDAMRIVSQQLKEEAQKKKEKLQKGQKKLNEEEDNDE 406 >UniRef50_A6VWX2 DEAD/DEAH box helicase domain protein n=2 Tax=Marinomonas RepID=A6VWX2_MARMS Length = 417 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 106/353 (30%), Gaps = 34/353 (9%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 ++ P I+ + T PK + P + + + + E+L ++ Sbjct: 68 TIAFCAPAVQHILDRDEQSTTAPKVLILAPSRELARQIFNVVEQLTKHTRIQ-------- 119 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + G G++ P L + L + D S+ Sbjct: 120 ------------SHLIIGGTPYGMQQQQLSEPCDILVATPGRLVELDEKQWLDLTDVSYF 167 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 I + M + LP + + SA + + Sbjct: 168 VIDEADRMLDMGFVSAINCIA--KELPKEHQTLMFSATLEGEKMGR--FASALLNSETQQ 223 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + + I + +L + ++ ++ + + Sbjct: 224 I---RLGESSRTVPSQIRQIAYRVDSEEHKEAVLKHLL-TQERVQQAVLFVSNREHVDIW 279 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + + + G LH ++ +R E ++ ++ G VLV ++ G+D+PE++ V L Sbjct: 280 VQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQVLVATDVASRGIDLPEINTVINLR 339 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 R S I GRA+R G I D M + I + K Sbjct: 340 LP-----RKADSYIHRAGRASREGEPGDCISLIDINDLPMIEKIQRFMQANIK 387 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 94/315 (29%), Gaps = 11/315 (3%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A LE ++ + + T+ + + G + L G Sbjct: 53 ASFAIPIIQNLEIDERSPQALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQ 112 Query: 325 LFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 D L +V+ + + + L E L + ++ Sbjct: 113 KED-LKQRCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYM 171 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPVATQVDDLLSEIR 440 T SAT S + T + + E V + +L Sbjct: 172 PKKHVTCLFSATYPAVIQRMSKKYLYKPAKVDLTSTNKPNILEEAYHVNEEHKELFLLHL 231 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 E ++ T+ + + LE++ V +H + ER+ +R + G+ +L Sbjct: 232 LALKKPESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRIL 291 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ +V ++ D + IGR+ R G AI ++ Sbjct: 292 VCTDVASRGIDVFKVEMIINYDMPS-----PVETYTHRIGRSGRVDEQGLAISLVNEYDG 346 Query: 560 SMAKAIGETERRREK 574 + + E Sbjct: 347 VRKEKLEEYLGYNLP 361 >UniRef50_C5LVK1 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LVK1_9ALVE Length = 658 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 15/224 (6%) Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPV-- 428 + ++ + T SAT + + G IE R V Sbjct: 429 EQEKTSKQGKKRYRITQMFSATMPTAVERLARKYLRCPAYISIGDPGAGKKDIEQRVVWT 488 Query: 429 -ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L E+ + +++ K+ A+ L +++E G V LH R + Sbjct: 489 SEGSKRKQLKEVLRYTEPP--IIIFVNVKKAADVLGKWIEGEGYSVSVLHGGKHQDAREQ 546 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + + R G DVLV ++ GLD+ +V V D K + IGR R Sbjct: 547 NMENFRAGYTDVLVATDVAGRGLDIDDVQHVINFDMPK-----NIEDYTHRIGRTGRAGK 601 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 G A K + + + Q E Sbjct: 602 KGLATSLLTKEDEHIMYDLKNFLEQN-GQIVPQELQHAQAAKFK 644 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 49/352 (13%), Positives = 91/352 (25%), Gaps = 39/352 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I M ELA + + Sbjct: 47 QAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTT 106 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 G G + S S P + D++ + + + + + Sbjct: 107 L--------CGGQPMGPQIQSLKHSPHIIVGTPGRVMDHVEKRRIDLRNVKLRVLDEADR 158 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M ++ QT+ SAT + + Sbjct: 159 MLDMGFEDDLRIIFG-----------------QTPKQVQTLLFSATFTEQIERVAKQYLH 201 Query: 410 DQVVRPTGLLDPIIEVRPV------ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + V + + + T+ L + + + N +V K D+ Sbjct: 202 NPVTCKVESQENKPAITQLGYNVLPHTRTQALKAVLTEYQPKN--AIVFCNRKTQVNDVV 259 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + L E G + L D++ +R ++ VLV ++ GLD+ +V+ V Sbjct: 260 DELIEDGFSAKGLQGDMEQHQRTSVLMQFASDSLQVLVATDVAARGLDIDDVACVINY-- 317 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + I IGR AR G AI + + I + Sbjct: 318 ---TVSEEPETHIHRIGRTARAGAKGMAITLVSEEEEHFLRKIEVLQESDIP 366 >UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE Length = 737 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 64/424 (15%), Positives = 131/424 (30%), Gaps = 38/424 (8%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT---QFDLEMM 297 P + ++ + L + + Q + T M Sbjct: 157 AFTVPVVERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYTMC 216 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRA 356 G + + P + D L L + + + ++ M G Sbjct: 217 VYGGTPYDGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIE 276 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV--DQVVR 414 ET+++ G E QT+ SAT + + + + + Sbjct: 277 DVETILKQG---------------ENNRDQIQTLLFSATLPKWVQGLTQRFLRPGHKFLD 321 Query: 415 PTGLLDPIIEVRPVA-------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G V Q LL ++ R ++ T +K+ A +L+ L Sbjct: 322 LVGDDRMQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELSVVLG 381 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + + LH D+ R + + R G F +L+ ++ GLD+ + LV ++D + Sbjct: 382 DS-LGAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDVTGIELVLMVDPPAD- 439 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + I GR R +G + K M I + + ++ + + Sbjct: 440 ----WETYIHRSGRTGRAGSSGVCVTLVTKKMEYMVPIIEKRAGMKFERIGAPQPADMAR 495 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + + L + A R + E D +AL + + ++ G + Sbjct: 496 IAAERTLS--LLGEVDPAVVGHFREAAERYLSESAADGRD-PAEALARALAKITGYKVMK 552 Query: 647 AQNL 650 A++L Sbjct: 553 ARSL 556 >UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 Tax=Metazoa RepID=DDX49_HUMAN Length = 483 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 127/393 (32%), Gaps = 33/393 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVV 337 ++ E+ R+ + + + G + P L D+L ++ + Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIK 144 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + + +E QT+ SAT Sbjct: 145 KIRFLVMDEADRLLEQGCTDFTVDLEA--------------ILAAVPARRQTLLFSATLT 190 Query: 398 NYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI--NER 448 + E G V LD + P + L+ I++ + Sbjct: 191 DTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWS 250 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +++ T T + + L L + LHS + ER + + + +L+ ++ Sbjct: 251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+P V +V + G + I +GR AR G+AI + + AI E Sbjct: 311 GLDIPTVQVVINHNTP--GLPKI---YIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365 Query: 568 TERRREKQQKYNEEH---GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +++ ++ E +T + ++ +I + + K + K + D Sbjct: 366 QIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDL 425 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 L + + + + L+ ++A + Sbjct: 426 EAKRKAELAKIKQKNRRFKEKVEETLKRQKAGR 458 >UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II protein n=2 Tax=Ostreococcus RepID=A4RSU9_OSTLU Length = 417 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 94/306 (30%), Gaps = 23/306 (7%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV----EYGFRLPSALDNRPLKFEEFEA 384 L +VV + + E L S+ + Sbjct: 117 LSKRPHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLP 176 Query: 385 LAPQTIYVSATPGNYELEK-----SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL-LSE 438 QT+ SAT + ++ T + +V D L Sbjct: 177 QKRQTLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVH 236 Query: 439 IRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + + + R ++ T + E ++ L G LH+ +R + + Sbjct: 237 VLRELVSSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTM 296 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 +LV ++ GLD+P+V LV D + R I IGR AR G+AI Sbjct: 297 VKILVATDVAARGLDLPDVELVVNYDIPSD-----PRQYIHRIGRTARFHATGQAISLVT 351 Query: 556 KITPSMAKAI-----GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + K I E E ++ N+ G + + + G + AK Sbjct: 352 QYDVGKIKKIEKHLGHELEEFHVQEADVNKLVGEVFASRKMAKLHMASPGGFDEQLSAKK 411 Query: 611 RGKSRP 616 + +S Sbjct: 412 KRQSAK 417 >UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma florum RepID=Q6F0U0_MESFL Length = 666 Score = 138 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 108/306 (35%), Gaps = 31/306 (10%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + R+ +L + +G + R + P + D+L L + D + Sbjct: 88 QIRIFGSRIENLVIAPLIGGADMRDQIKRLKDSQIVVGTPGRVNDHLNRKTLKLDDVRTI 147 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M + + + E + Q SAT ++ Sbjct: 148 ILDEADEMLKMGFKNEIDALF-----------------ERVSPDVQIGLFSATTSPKVMQ 190 Query: 403 KSGGDVVDQVVRPTGL---LDPIIEVRPVATQ---VDDLLSEIRQRAAINERVLVTTLTK 456 + + + V ++ I + T+ +DL+ ++ ++ +R +V + TK Sbjct: 191 IANDYMNEYDVIEIENQIEVNANITNTFIFTKGFSKEDLIVKVFKKHKP-KRAIVFSNTK 249 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + + LE G R ++ D +R I R E VLV +++ G+D+ V Sbjct: 250 NHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISVLVATDVVARGIDITGVD 309 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-DKITPSMAKAIGETERRREK 574 V D E + + IGR RN G +I + ++ K I + Sbjct: 310 YVINYDVSME-----DEHFVHRIGRTGRNNTKGDSITFVQNQNVLRQIKGIEKNFNLIID 364 Query: 575 QQKYNE 580 + + +E Sbjct: 365 EMQISE 370 >UniRef50_A0LD66 DEAD/DEAH box helicase domain protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD66_MAGSM Length = 572 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 67/408 (16%), Positives = 119/408 (29%), Gaps = 70/408 (17%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQA-MEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F I +H VT + + + + LA L + + L Sbjct: 44 QAQTGTGKTAAFLIGALSHLVTHPRKHGKPAGQSLPRILAVAPTRELVAQIESDAKLLNA 103 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 TQF L + + P L DY + + + + + Sbjct: 104 HTQFKLHCVYGGVDYEKQKRILMEEDVEILVGTPGRLIDYFKQNAYGLKGVEVLIVDEAD 163 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE------ 402 M+ + RLP + + F + Q + L Sbjct: 164 RMFDMGFIDDLRYMLR--RLPHYSERLSMLFSATLSYRAQEMSYEYMNMPEVLSTTVDVK 221 Query: 403 -----------------------------------------KSGGDVVDQVVRPTGLL-- 419 D D++V P G + Sbjct: 222 TAERVEQKLYHVSGDEKIALLVGLLRDILQHEGIDLSQPAMLELDDNGDEIVEPNGAMLS 281 Query: 420 --DPIIEVRPVATQVDDLLSE----------IRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +P E P DDL +E + R +V TKR E + +L+ Sbjct: 282 GDEPSTESEPFVPHPDDLDTEDAARAAEAALANAQKTPPGRSMVFVNTKRAGERVERWLK 341 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +G + YL D+ ++R+++++ + GE+ VL+ ++ GL + V+ V D Sbjct: 342 ANGIQAGYLSGDVPQMKRLKVLKRFQDGEYPVLIATDVAGRGLHIDGVTHVINYDLP--- 398 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + + IGR AR G AI D+ +A+ Sbjct: 399 --DNAEDYVHRIGRTARAGNRGDAIALVDEEGAYSLEAVQAYIGMTIP 444 >UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2 Tax=Viridiplantae RepID=Q00W64_OSTTA Length = 543 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 77/242 (31%), Gaps = 30/242 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L L + +H + + M R + + Sbjct: 186 TPGRLKALANDGTLNLKKCAHFVLDECDKMLEELDMRSDVQEIFKATPH----------- 234 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPVATQVD 433 Q + +AT + D + + V+ + + Sbjct: 235 -----DKQVMMFTATLSKELRALCKKFMNDPMEIFVDDETKLTLHGLVQHYVKLEEAEKN 289 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+++ N +V++ + + L L E +H D+ ER+ + + Sbjct: 290 RKLNDLLDSLMFN-QVVIFVSSVSRCKALDRLLRECNFPSIGIHGDMKQEERLACYKSFK 348 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ +LV +L+ G+D+ V++V D S + + +GRA R G A+ Sbjct: 349 DGDKRILVATDLVARGIDIERVNIVINYDMPS-----SADTYLHRVGRAGRFGTKGLAVT 403 Query: 553 YG 554 + Sbjct: 404 FV 405 >UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Corynebacterineae RepID=Q0S0C5_RHOSR Length = 632 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 86/311 (27%), Gaps = 22/311 (7%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPL 377 G P D L ++V + G D L E Sbjct: 136 GTPFSKQVDQLRRGVDILVATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVR 195 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQ 431 Q + SAT + D V T ++ Q Sbjct: 196 AILGETRADGQRLLFSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQ 255 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D++L+EI A + R ++ TK E +T+ L G LH +R ++ Sbjct: 256 KDNVLAEI---GARDGRTIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLER 312 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G VLV ++ G+ + + LV +D + + + GR AR G Sbjct: 313 FKNGRTPVLVATDVAARGIHVDGIDLVVHVDPPAD-----HKDYLHRAGRTARAGEKGTV 367 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYN------EEHGITPQGLNKKVVDILALGQNIA 604 + + + + V D + G+ Sbjct: 368 VAIVLPNQKRTFRRLTGMAGVDATAVPVTPGSEKLASITGAKAPSGEPVRDTYSRGERGG 427 Query: 605 KTKAKGRGKSR 615 K RG R Sbjct: 428 DRKFGDRGPRR 438 >UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Tax=Dictyostelium discoideum RepID=DDX49_DICDI Length = 508 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 103/324 (31%), Gaps = 34/324 (10%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD-ESHVTIPQIGGMYRGDRARK 358 G + + P L +L + + + + + + D + Sbjct: 108 GGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELE 167 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV----- 413 + QT+ SAT + + + Sbjct: 168 IASI---------------LEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNS 212 Query: 414 --RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 L P T+ L+ +++ +V E + L + Sbjct: 213 KYDTVDTLKQEYIYMPAPTKDCYLVYILKKH--EGSSAIVFVNNCYAVEAVKGMLNKLDI 270 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 LHS +D R+ ++ + G+ VLV ++ GLD+P+V +V S Sbjct: 271 PSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINY-----KLSNS 325 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH---GITPQ 587 + I +GR AR +G+AI + S+ K I E +++ + K +++ + Sbjct: 326 SKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEA 385 Query: 588 GLNKKVVDILALGQNIAKTKAKGR 611 +K+V+I + + R Sbjct: 386 STARKIVEIHLDEIEFGVKQKERR 409 >UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Campylobacterales RepID=D1B3F9_SULD5 Length = 989 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 97/289 (33%), Gaps = 28/289 (9%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + +SATP L + + T D V + ++ E I + Sbjct: 625 HILSMSATPIPRSLNMALSSIKQYSQLLTPPSDREDVRTFVKEYDEKVIKEAILREMRRG 684 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++ E + L +R L HS+I + + +D+L+ + Sbjct: 685 GQIFFVHNRIATIEAKRKELLSMMPNLRILTLHSEISASVTEKEMLRFEEKAYDLLLSTS 744 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+ +P V+ + I AD G L Q GR R+ + + ++ Sbjct: 745 IIESGIHIPNVNTIMIDAADHFG----MADLHQLRGRVGRSKRQG---FCYFLV-KEKES 796 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + E+ ++R + N G G D+ G +A+ N+ Sbjct: 797 LSESAKKRLIALESNSYLG---SGSILAYHDLEIRGGGNLVGEAQSG-------HLKNIG 846 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQIRDQLHQLR 666 + + L+ I+ L G ++ ++ F + I + +L Sbjct: 847 YALYLRMLEDAINALMGKTPVASREVDMKLSISAFISDSYIAEDRVRLE 895 Score = 111 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 5/192 (2%) Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAY-VPSSDTFIEKDASVNEHIEQMRLSATKAMLER- 133 E+ + Y ++Y +P D L A Sbjct: 17 ELLGVKGDKEAFLASEVALYCGKKSYVLPDLRANYGDDLLSFHEEMVELLRVLYAFYHDA 76 Query: 134 -RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 ++++ + + L L GM + ++ Y D +G Sbjct: 77 SSKKILISPLRTLLTPLPKVELF-STLTLAFGMRLHLERFREQMFYWGYLAVDVVQGKGE 135 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 +RG++IDIFP SD ALR+ LFD+EVE + F+ + + + + + Sbjct: 136 ISIRGDIIDIFPPNSD-YALRISLFDDEVESIRFFECESQKSLKDELEEWLLFPALFALD 194 Query: 253 RERIVQAMEEIK 264 R I+ Sbjct: 195 ESRYALMQRRIE 206 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 56/405 (13%), Positives = 124/405 (30%), Gaps = 45/405 (11%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT-----LFDYLPADGLLVVDESH 341 +R + L+ + Y G L +YL D LL+ E+ Sbjct: 344 RKRVRIVLDELKNGDYVVHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDDKLLLPVENL 403 Query: 342 VTIPQIGG---------------MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 I + G + KE L+E + + R + A+ Sbjct: 404 HVIDRYIGESGGLVSVDRLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVEGLNIAIE 463 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRA 443 + + + + V+D+++ +D ++ + + ++ I Sbjct: 464 NEELQAFQADAGFMYTEDQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATV 523 Query: 444 AINERVLVTTLTK----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + L+ T + + L+ ++ +V L ++ I+++L+ G V Sbjct: 524 QKGFQALLIAPTTLLCAQHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKELKSGALQV 583 Query: 500 LVGINLLREGLDMPEVS--LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 VG + L D+ + LV + + K G + E+ + R + I Sbjct: 584 CVGTHSL---FDVELFNPALVVVDEEHKFGVKQKEKL------KNFRENVHILSMSATPI 634 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG--RGKSR 615 S+ A+ ++ Q + K+ + + + + + G Sbjct: 635 PRSLNMALSSI--KQYSQLLTPPSDREDVRTFVKEYDEKVIKEAILREMRRGGQIFFVHN 692 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN---LEFEEAAQ 657 I + ++ +I L + L FEE A Sbjct: 693 RIATIEAKRKELLSMMPNLRILTLHSEISASVTEKEMLRFEEKAY 737 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 82/286 (28%), Gaps = 16/286 (5%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 R + G L ++V I + + L E L Sbjct: 101 RQILALYGGASIEEQIRQLAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLD 160 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PI 422 + + + SAT E + + D G L+ + Sbjct: 161 MGFQRDLQEILQAVPQQVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHL 220 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 P + L + I ++ T+ +++ E+L G LH D+ Sbjct: 221 YVAVPARHKYAALKRVVDYYPNIYG--IIFCRTRAETKEIAEWLIRDGYNADALHGDLSQ 278 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R ++ R+ +LV ++ GLD+ +V+ V G S GR Sbjct: 279 AQRDMVMNRFRIRNLQLLVATDVAARGLDVDDVTHVL-----HYGLPADPDSYTHRSGRT 333 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AR G +I + I + R + I + Sbjct: 334 ARAGKTGLSIAICHLRDSKQIRIIEQHAGIRIESMPLPSGQEICKK 379 >UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CF86_THAPS Length = 387 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 85/278 (30%), Gaps = 28/278 (10%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNR 375 G L L ++V I + R L E L + + Sbjct: 103 GGNRGTWELTKELKKGCEIIVSTPGRLIDMVKKKGTNLQRVTFVVLDEADRMLDMGFEKQ 162 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-------PV 428 E QT+ +SAT G + + + V G E P Sbjct: 163 VSSILENVRPQRQTLLLSATFGKRVERVARSWLKNPVRIAIGRTGASSEHVDQHVMCLPS 222 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-------GERVRYLHSDID 481 L E+ + R LV T+ + L+E + V +H D D Sbjct: 223 REAKIQWLVEMLPVLSPLGRCLVFVATRADCDLLSEKVTNSQALVGNDNSTVVSIHGDKD 282 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R I + +L+ ++ GLD+P+V V DA ++ S + IGR Sbjct: 283 QRDRNSAIYQFKKNSQAILIATDVAARGLDIPDVMTVINFDA-----AKNIDSHVHRIGR 337 Query: 542 AARNV--------NGKAILYGDKITPSMAKAIGETERR 571 A R G A A+++ E R Sbjct: 338 AGRMSKEDSGQHQRGVAYTLMTDGNADFAQSLVEAFER 375 >UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHS8_BDEBA Length = 549 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 21/353 (5%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I P + I + +E+ A K ++ K + T+ Sbjct: 46 QTGTGKTAAFVI-PVMERILRARPIQGEVT--EEQKALIEKRAYKDWKPQNFVLILVPTR 102 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGM 350 E + + +++ R + G G + L +V I + Sbjct: 103 ELAEQVQDNINKLSVDSGLRGFAIYG-GTGYDKQKEALKNGVEFIVATPGRLIDLYKEHL 161 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + R E + + Q + SAT L + Sbjct: 162 VDLKQVRAIVFDEADRMFDMGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSE 221 Query: 411 QVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V + + LLS ++ ++ ++ T K E + Sbjct: 222 PVEINISRDQAKADNVKDQIFHVGSDEKPQHLLSLLKVH--NPKQAIIFTNFKMSVERIA 279 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLR-LGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++L E+G + S + +R +I + + +VLV ++ GLD+ V +V + Sbjct: 280 KFLVENGVPAMAISSLLTQAQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYE 339 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + S + IGR R G+A I + + + + Sbjct: 340 LPMD-----SESYVHRIGRTGRAGTTGQAFSLVGDKDIESLGRIEDYLKHKIE 387 >UniRef50_B3RW01 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RW01_TRIAD Length = 651 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 93/307 (30%), Gaps = 44/307 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + ++ D + + + M + Sbjct: 218 TPGRLNDHLKRNNFVLDDVQLLILDEADEMLTPNFRD----------------------- 254 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL----- 435 Q + AT Y E + + V V L Sbjct: 255 --SPQNKQVLMFGATMPRYIKEIAKKYLKTPEVIDITKKGSPFPKTVTHKAVKLLNWSCR 312 Query: 436 ---LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + I + I +R +V TK A DL + + G V+ LHSD+ +R EII Sbjct: 313 SLAVRNIIEEEGI-QRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAF 371 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 R+G+ +V ++ GLD+PE LV + GF + GR R + Sbjct: 372 RVGKLKAIVATDVAARGLDIPETDLVIQVAPPPNGFDF----YVHRTGRTGRAGRSGVAV 427 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + E +Q+ E + I A G + + + Sbjct: 428 LIYGSDRKDRLFLKEL------RQQVQVEEKSPLKFEEIAKYAISAAGDRLQEADQRSIK 481 Query: 613 KSRPIVE 619 + P + Sbjct: 482 FALPKAQ 488 >UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rhodobacter sphaeroides RepID=B9KVH0_RHOSK Length = 1059 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 98/343 (28%), Gaps = 31/343 (9%) Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D L + +V +H + + + +G + L Sbjct: 627 DGLRDGSIRIVVGTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALG--------AD 678 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAI 445 + ++ATP L+ + + D T A +L + + + Sbjct: 679 LHVLTMTATPIPRTLQTALVGLQDLSEIATPPARRRAVRTLTAEDDAAVLRQALLRERRR 738 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V + L + R H D+ E + + G D+L+ Sbjct: 739 GGQSFVIVPRIAEIDATEARLRDLLPEAQLRVAHGDLAPEELDRAMVEFAAGRGDILLAT 798 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 +++ GLD+P + + ++ G + L Q GR R Y + Sbjct: 799 SIVETGLDVPRANTMIVMQPQLFGLAQ----LHQLRGRVGRGARQ---AYCYLMHG-PGD 850 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E RR + + G G D+ G + + + Sbjct: 851 DLDEAALRRLGTLQAFDRLG---AGAAIAAEDLDQRGAGELFGERQSG-------HVRLI 900 Query: 624 PMDMSPKALQQKIHELEGLMMQHA-QNLEFE-EAAQIRDQLHQ 664 + + L Q + G +L E + A D + + Sbjct: 901 GLPLYQHLLAQAVRAARGEPPTAQHVSLAMEGDGALPADYIPE 943 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 15/213 (7%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 + + + A ++ ++E P P D AS Sbjct: 22 HLHITSDDARAEEIVRFLREIAP-------------TLRPGLFPCWDCLPYDGASPTPDA 68 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 R++ A+ R +V+ S + P + G +D A+ A Sbjct: 69 MGRRMALLDAVRARDVRLVIVGPSGLLQRVPPVE-AMRRFAVRAGETLDLGALRSFAARA 127 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y +D+ + G R EV+++F A +D +R+ L + V + +DP++ + + +P Sbjct: 128 GYVEDDRIDEPGEIAFRAEVVEVFAAGADR-PVRIGLQGDLVTGIRRYDPVSLRSLEDVP 186 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + P T + L Sbjct: 187 GIDLLPVTELPESAFAEGPPPRGAEHLLPRAWP 219 >UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q2K3_9ACTO Length = 554 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 63/362 (17%), Positives = 104/362 (28%), Gaps = 22/362 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L AR + + + L +L + + + G Sbjct: 123 LIARLATSGTRRRPNQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQI 182 Query: 327 DYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +VV + + + D L E + E Sbjct: 183 TGLRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPA 242 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQR 442 Q + SAT + V + + Q D L + Sbjct: 243 TGQRLLFSATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDL 302 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 AA R LV T TK A+ LT+ L G LH ++ R + G LV Sbjct: 303 AAAPGRTLVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVA 362 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+ + +VSLV D E ++ + GR AR G +T Sbjct: 363 TDIAARGIHVDDVSLVIHADPPIE-----HKAYLHRSGRTARA--GAEGTVVTLMTDDQV 415 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + + R+ GI P ++ D L + +RP+ +P Sbjct: 416 RDVRDLTRK----------AGIAPTVTKLRIGDPLLTELAPGERTF-VEPSARPVAQPAT 464 Query: 623 VP 624 V Sbjct: 465 VR 466 >UniRef50_A5FFZ1 DEAD/DEAH box helicase domain protein n=6 Tax=Bacteroidetes RepID=A5FFZ1_FLAJ1 Length = 444 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 33/275 (12%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADGLLVV 337 + R + + ++ C GI + + P P L D + + + Sbjct: 87 QIFRNLEDFSKYIPNISIAATCGGIPIKPQIERLKTPTHIIVATPGRLIDLIQRKAVDLK 146 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 ++ + + M + + ++ +T+ SAT Sbjct: 147 QTQYLVLDEADEMVSILKESLDEILTE------------------IPKKHRTLLFSATLP 188 Query: 398 NYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAA--INERVLV 451 + + VV+ + ++ I+ + + + L + ER ++ Sbjct: 189 GTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMHFLNSREGERGII 248 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK L + L + +H + R I+ R G ++LV +L G+D Sbjct: 249 FCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINILVATDLAARGID 308 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + E+S V + + + GR AR Sbjct: 309 VKEISYVVNYHLP-----DAYETYVHRSGRTARAG 338 >UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAH8_9BACT Length = 542 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 113/351 (32%), Gaps = 40/351 (11%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE----------LGYCSG 305 + + L R+ L + L + Q D E++ G Sbjct: 181 LAVFTRLLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHE 240 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + S P + DY L + + I + M Sbjct: 241 KQRRSLEQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIP-------- 292 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--- 422 D + + + QT+ SAT ++ L + G + + V+ + + Sbjct: 293 -------DVKRIVSQLPRKGERQTLLFSATLEDHILRLASGWLAEPVIVESEPEKMVSEN 345 Query: 423 IEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 IE + D+ L+ + R +RVL+ K + L L G V L DI Sbjct: 346 IEQTFYSVLRDEKLALLLYILRTEPYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDI 405 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R++++ R G +++ ++ G+ + +VSLV D + IG Sbjct: 406 PQEKRIKVLERFRAGTEKIVIATDVAARGIHVDDVSLVINYDLP-----ERAEDYVHRIG 460 Query: 541 RAAR-NVNGKAIL----YGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 R R NGK+I YG P + K + + + + P Sbjct: 461 RTGRAGHNGKSISFLCEYGAYYLPDIEKLLDVQFHSTQPTEDMLKMPEPVP 511 >UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Trypanosomatidae RepID=A4H460_LEIBR Length = 689 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 23/281 (8%) Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L L + + M L+ + E Sbjct: 221 DFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNG-------STSAEKTV 273 Query: 387 PQTIYVSATPGNYELEKS----GGDVVDQVVRPTGLLDPIIEVRPVATQVDD----LLSE 438 QT+ SAT + S + +D V + I+ + L Sbjct: 274 HQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADL 333 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I+ + + R LV T TK+ DL+ + + LH D+ +R ++ R +F Sbjct: 334 IKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFS 391 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 VL+ ++ GLD+P V LV + + I GR R G +L Sbjct: 392 VLIATDVAARGLDLPMVDLVI-----QCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQPR 446 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + I + + I D+ Sbjct: 447 EEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLAR 487 >UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EQ41_TRIVA Length = 416 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 94/325 (28%), Gaps = 19/325 (5%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TI P + + + EN + T+ ++ + Sbjct: 36 TIPPAIEKKDICGTAETGSGKTGAYMLPIFHHMWENPHSF-FALVFAPTRELATQIDHVT 94 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 G + R + G + L A +VV I + K Sbjct: 95 RDIGKDIKVR-VCTIIGGVDEDSQVKALKAQPHVVVATPGRLARLIRNNPKVIPLNKVEC 153 Query: 362 VEYGFRLPS----ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV----- 412 + + + QT SAT + + + D V Sbjct: 154 LVFDEADNMLREPSFQTDIQLILSKLNSTHQTYLFSATMPEEIEQLAKQTMSDPVRLSLT 213 Query: 413 -VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 V V + + L + +++ ++ + + A ++ L Sbjct: 214 SVNTVARTLTEHLVISETGKKEATLVALMN-QYPDKQTIIFVGSCKTATIISTLLSNLNF 272 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R H + ER+ I + G++ VLV N+ GLD+P V LV + +E Sbjct: 273 RTIVYHGQLPQRERINAIDRFKNGDYRVLVATNVGSRGLDVPHVDLVINYELPEE----- 327 Query: 532 ERSLIQTIGRAARNVN-GKAILYGD 555 I +GRA R G A+ Sbjct: 328 HEEYIHRVGRAGRAERSGVAVTIIT 352 >UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micromonas RepID=C1FEE6_9CHLO Length = 484 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 98/314 (31%), Gaps = 36/314 (11%) Query: 312 FLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 L P L D+ A + + + + + + + + Sbjct: 184 MLRPHIAVATPGRLMDHFLHCSAVAKCFENVRCLVLDEADRLLDPGFEAELQAIMHNL-- 241 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYE---LEKS-GGDVVDQVVRPTGLLDPIIE 424 + QT+ SAT E + G ++ + ++ T L E Sbjct: 242 --------------PSANRQTLMFSATITKSISAVQELALGKALLFEALKDTQLAGRCKE 287 Query: 425 VRPV---ATQVDDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + L+ +++ R ++V T R + L E L G LH+ Sbjct: 288 EYCFIAPRVKEVYLVHILKRAPTWGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHAAK 347 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R + + GE +++ ++ GLD+P V +V D R I IG Sbjct: 348 KQARRHASLSRFKSGEIQIMIATDIASRGLDIPTVDMVVNYDVPL-----IPRDYIHRIG 402 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R AR G+AI + S+ I + R+ + E I V Sbjct: 403 RTARAGRVGRAITLVTQHDISLVHQIEQLTCRKLVELSKLSEEAILKD---MAQVFAARR 459 Query: 600 GQNIAKTKAKGRGK 613 N+ A G + Sbjct: 460 IANLNMGAAGGFNE 473 >UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XCU0_CAEBR Length = 1248 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 L D + + + + + + + + K+ + + + D Sbjct: 798 TSGRLMDLIGKGEVCLDHLKFLVLDEADRLLQDV---KQDPCGHLGAIINDHDFM----- 849 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVAT-- 430 A QT+ SAT N E + + ++V +G L +++ Sbjct: 850 -RNADNRQTLMTSATFDNAVEEVANRLMKKVDGQNDLVRIVLASGRLSNRVDLHFHEAGG 908 Query: 431 --QVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE------EHGERVRYLHSDI 480 + D L + E + L+ K + L ++ E V+ LH D Sbjct: 909 AAKHDTLKKILLDTNERGEIPKTLIFVQKKASCDFLASKIQMIGQKLEKDFGVQTLHGDR 968 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R I + G +LV ++L G+D+ ++ V D + I G Sbjct: 969 SQDNRDNTISAFKNGSLKILVTTDVLSRGIDVVDLERVVNFDLPDGSVETGVDTFIHRSG 1028 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R G + + + + + + + ++ + + ++++ G Sbjct: 1029 RTGRMHKGTCHSFINPGFDNDVRLVPKLIELVKSTGNPDDL-----AKVPEFMLELAKRG 1083 Query: 601 QN 602 N Sbjct: 1084 SN 1085 >UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=4 Tax=Eukaryota RepID=D1HEC3_VITVI Length = 786 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 101/298 (33%), Gaps = 15/298 (5%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG--DRARKETLVEYGFRLPSALDNRP 376 G+ + F+ L + +++ + + + E + Sbjct: 134 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQL 193 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPV----A 429 K + QT+ SAT + E + + D + + P ++V Sbjct: 194 HKILAQLSDNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHE 253 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ LL IR++ + +++ L+ TK E L E G + D+D R I Sbjct: 254 EKLAALLYLIREQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHI 313 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 R + +L+ ++ G+D+P + V D F + + +GRAAR G Sbjct: 314 SRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWD-----FPPKPKIFVHRVGRAARAGRTG 368 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 A + + + + EE P + K+ I+A G + Sbjct: 369 TAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGR 426 >UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteriaceae RepID=C4K3R7_HAMD5 Length = 454 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 58/413 (14%), Positives = 123/413 (29%), Gaps = 34/413 (8%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P ++ + I R + ++ E + T + + Sbjct: 57 AFLIPALQHLIDFPKKKPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKIT--GGV 114 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 Y + E +S + L Y+ + + + + M A+ Sbjct: 115 AYMNHTEIFST--NQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIE 172 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP-GNYELEKSGGDVVDQVVRPTGLL 419 ++ R QT+ SAT E S + D + Sbjct: 173 VISAETRWR-----------------KQTLLFSATLESATIREFSERVLRDPIYLEAAPS 215 Query: 420 DP----IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERV 473 I++ + + ++ + ++ ++ T+ +L L+ G Sbjct: 216 VRERKKILQSYYRSDNLPHKIALLCYLLKTPSVQKSIIFVRTREKVHELVHRLQSEGIHS 275 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 YL ++ +R E I L G VLV ++ GLD+ ++S V D G Sbjct: 276 GYLEGEMVQTKRTEAIARLNSGRIQVLVATDVASRGLDIEDISHVFNFDMPYTG-----D 330 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + IGR AR G AI + + K + ++ K + +E T KK Sbjct: 331 VYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVERYLKKTIKPRVVDELRPTTKAPNEKK 390 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + K + + + + +++ + + Sbjct: 391 AGKPSKKVLAKREEQKKAKKEKTKVKVKVKIRHRDKKNLGKRREPKNLKKNKE 443 >UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=cellular organisms RepID=A1TMG8_ACIAC Length = 446 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 84/252 (33%), Gaps = 29/252 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + L + + + + + A + V Sbjct: 138 TPGRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVLA---------------- 181 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDD--- 434 Q + SAT + G + D + P I R +A + Sbjct: 182 -LLPAQRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEAPRRTQ 240 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL ++ + RVLV T+ AE + E L + G H + R +++++ R Sbjct: 241 LLKQLLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRD 300 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + VLV +L G+D+ + V D R+ + IGR R +G A+ + Sbjct: 301 ERWQVLVTTDLAARGIDIAGLPAVVNYDLP-----RAAADYVHRIGRTGRAGASGVAVSF 355 Query: 554 GDKITPSMAKAI 565 + + Sbjct: 356 VTPEAAPHWRLL 367 >UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=uncultured marine bacterium 66A03 RepID=Q4PNH7_9BACT Length = 659 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 119/387 (30%), Gaps = 44/387 (11%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F I T + + + + +A R++ L+ K LE + Sbjct: 42 VSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRT 101 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + QF G E + P L D++ L + D V + + Sbjct: 102 KAQF---ASCVGGMDPRAERRTLESGAHIVVGTPGRLRDHIERGVLRLSDIKAVVLDEAD 158 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L + +T+ SAT ++ + Sbjct: 159 EM-----------------LDMGFREDLTFILGKAPVERRTLLFSATVPTQIVKLAKTYQ 201 Query: 409 VDQVVRPTGLLDP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D V ++ + D + + + ++ +V T+ L Sbjct: 202 KDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSG-AIVFCNTRAAVTHL 260 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L G V L ++ ER ++ +R G+ +V V ++ G+D+P + LV D Sbjct: 261 ASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAARGIDLPNLELVIHAD 320 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 +S +++ GR R + R +K ++ + + Sbjct: 321 LP-----QSNEAMLHRSGRTGRAGR------------KGVSVVLIPYRNFKKVERMFDSN 363 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAK 609 GI P +N D + I+ K++ Sbjct: 364 GIEPIWVNPPSADQIIEKDRISLLKSE 390 >UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 n=1 Tax=Hydra magnipapillata RepID=UPI00019270D8 Length = 599 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 107/295 (36%), Gaps = 14/295 (4%) Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + D+ + + E L +N+ + PQ + SAT Sbjct: 309 NDILQNYKDYLCFDQIKIVAIDEVDVMLHMGFENQIKSIIDAVPWKPQMMMFSATIPPAI 368 Query: 401 LEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + V+ G+ + ++ A++ L + + +L+ Sbjct: 369 ETLAQSMMENPVMVSVGISGLPNAHVKQLVLWVEEASKRKKLFTILNDSKYFTPPMLIFV 428 Query: 454 LTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 +K+ A+ L + L ++ + +HSD ER I+ + G FD+LV N+L G+D+ Sbjct: 429 ESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSFDILVSTNILGRGIDL 488 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 P V V + D F S + +GRA + + G +I + + + + E Sbjct: 489 PNVRQVLLFD-----FPNSIEEYVHQVGRAGQLHSYGLSIAFINNSNKHIFLDLKELFET 543 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + Q L + + + G+ K S+ +++ Sbjct: 544 TKGNLPFEILSSPYLQTLRETRLKLYKEGKLKRKHGIDEDLNSQNLLQILTKSYK 598 >UniRef50_A8IYU1 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IYU1_CHLRE Length = 235 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 73/244 (29%), Gaps = 35/244 (14%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + L++ +V + + M G LD P + Sbjct: 5 TPGRLLDLADSGHLVLGHVRYVVLDEADKML-------------GLGFKPQLDRLPQR-- 49 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-----GLLDPIIEVRPVATQVDDL 435 PQ + SAT + + + + ++ Sbjct: 50 ------PQVLLFSATMPAEVEAAAAQWLRKPERVAVSAGGANAISRTVTQVGHLGRIRAQ 103 Query: 436 LSEIRQRA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + + RVLV + L L G +V LH ER + + + Sbjct: 104 YQQQQAAGAGGRNPPRVLVFANRVKAVRFLAAALAREGYKVAQLHGQRSQGERNQAVSEF 163 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R G+ VLV ++ GLD+ + V D F + + +GR R G A Sbjct: 164 RAGKAQVLVATDVAARGLDIRALPYVVNYD-----FPARIETYVHRVGRTGRLAACGHAY 218 Query: 552 LYGD 555 + Sbjct: 219 SFFT 222 >UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intestinalis RepID=A8BQS0_GIALA Length = 900 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 108/323 (33%), Gaps = 36/323 (11%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + I I P +++ + + R LL + LE+Q Sbjct: 100 RATTGIRGLVIAPTRELCVQIGGVIRKLSRFTD--PELRVCLLVGGEALEKQFTALTANP 157 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 D+ + R L + + +V + M+ Sbjct: 158 DIIVCTPG----------RILHIHDQVSTFKSQLKSIE----------YVCFDESDRMFE 197 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + ++ + + + L Q I VSAT N S + + Sbjct: 198 MNFQQQVNEILDLLPAERTGGHITETRSARDFLGYQIIMVSATMPNNLAVFSKARLQNPT 257 Query: 413 VR--------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + P L + I P+ + LL R+ R+LV TK E LT Sbjct: 258 IIAAENDMVLPNELTNQFIY-CPINYREAALLYICRELVPKTWRLLVFVATKHHCEYLTS 316 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L+ + R ++ +D +R + + G + +L+ ++ G+D+P ++ V + Sbjct: 317 ILQANNLRATCIYGSLDQKQRTLALSEFDKGRYSILISTDVAARGIDIPNLNCVINYN-- 374 Query: 525 KEGFLRSERSLIQTIGRAARNVN 547 F S ++ + +GR+AR + Sbjct: 375 ---FPSSGKNYVHRVGRSARAGS 394 >UniRef50_UPI0000D8BB48 WW domain-binding protein 11 (WBP-11). n=1 Tax=Danio rerio RepID=UPI0000D8BB48 Length = 513 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 89/321 (27%), Gaps = 40/321 (12%) Query: 321 PPPTLFDYLPADGLLVV-DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D++ + ++ + + + D + ++ Sbjct: 205 TPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVQKLQRAA--------LQDPV 256 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVD 433 + ++ + + + D V ++ + + D Sbjct: 257 KCSQSSGVR---------KKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKD 307 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L I A +V T + + L G LH + +R+ + + Sbjct: 308 CYLVSILNELA-GNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFK 366 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 VL+ ++ GLD+P V V D + I +GR AR GK+I Sbjct: 367 SKSRSVLLATDVASRGLDIPHVDCVINFDIPTH-----SKDYIHRVGRTARAGRSGKSIT 421 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH--------GITPQGLNKKVVD-ILALGQNI 603 + + + + I ++ EE + ++ + + Sbjct: 422 FVTQYDVELFQRIEALIGKKLPAFPTQEEEVMMLVERVSEAQRFARIEMKESSEKRKRPS 481 Query: 604 AKTKAKGRGKSRPIVEPDNVP 624 A + G+ V Sbjct: 482 AAQEVDEDGEQSSGVRKKVKG 502 >UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KDQ4_9ALVE Length = 755 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 89/292 (30%), Gaps = 49/292 (16%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + G+ + + + + M + + Sbjct: 407 TPGRLLDMMSDGGVCLRRVTFFVVDEADRM-----------------ILLGFWKQVKTIS 449 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + Q I +SAT + S D V G + I+ + Sbjct: 450 QQIRPDRQCIMLSATWPEEVRDVSLKLCREDPVHINVGDISDNIDDSDPYNREK------ 503 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD- 498 + A ++VL+ T K+ ++L L + G +HS + ER I + G + Sbjct: 504 LRTARSVKQVLIFTSGKKSVDNLVGCLRQIGWPAVGIHSGKEQAEREWIFDQFK-GRLNT 562 Query: 499 ------------VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 +LV +++ G+D V V D F S I IGR R Sbjct: 563 EDHSRASRAEAVILVATDIMARGMDFVSVRYVINFD-----FPESCEDYIHRIGRTGRAG 617 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQ-----KYNEEHGITPQGLNKK 592 G A Y + +A+ + R K E+ P+ K Sbjct: 618 HQGNAYSYFSENDFWVAREMIPLLRESNVDIPPMMLKVAEDPAYWPRNARKS 669 >UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Y9_9FIRM Length = 474 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 28/291 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P ++D++ L + + + + M+ + Sbjct: 128 TPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVH-----------------QIL 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLS 437 E QT SAT L+ + V D + + I + + + L+ Sbjct: 171 EQLPSPIQTCLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLT 230 Query: 438 EIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + +V + AE++ E L++ G LH ++ +R +++ R G Sbjct: 231 GLLHVFSTIQAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQG 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + +L ++ GLD+ +SL+ D + S I GR R G ++ Sbjct: 291 QLRILCATDVAARGLDIDGLSLIVHWDLPL-----NLESFIHRCGRCGRIDQLGTSVALL 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 S + ET +++ + + + K K Sbjct: 346 TPSQKSRYSSFLETLETQDEAFELDPFDDHSGLAHWKTKNQRQPEKAAELK 396 >UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=Streptomyces sp. ACTE RepID=D1XG89_9ACTO Length = 545 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 38/281 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M + + Sbjct: 190 TPGRLKDLIERGDCRLDEVTVTVLDEADQMADMGFMPQVVALL----------------- 232 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT----QVDDLL 436 + Q + SAT + D VV + D Sbjct: 233 KQVEPDGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVADETDKK 292 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + AA RV++ TKR A+ + L G R LH +R + + G+ Sbjct: 293 AVATRIAAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQ 352 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 LV N+ G+ + ++ LV +D + + + GR AR G++ Sbjct: 353 VTALVATNVAARGIHVDDLDLVVNVDPPTD-----HKDYLHRGGRTARA--GESGSVVTL 405 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + P + + + + GI P+ K D Sbjct: 406 VLPEEKREMT----------RLMADAGIAPRTTRIKSSDEE 436 >UniRef50_Q22MC1 Type III restriction enzyme, res subunit family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22MC1_TETTH Length = 440 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 58/382 (15%), Positives = 119/382 (31%), Gaps = 32/382 (8%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + +L M + + + +S G L +VV Sbjct: 66 KDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHIVV 125 Query: 338 DESHVTIPQIGGM----YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 T+ I + + L E ++ EF Q I + Sbjct: 126 GTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIILAT 185 Query: 394 ATPGN--------YELE---KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 AT + L+ K V+Q + L + P + + ++ + + Sbjct: 186 ATINDDFNDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVKDQNFINLLNKF 245 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +++ R + L + LHS + +R+ ++ + ++LV Sbjct: 246 --KGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANILVA 303 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+P V LV D ++ I +GR AR G AI + + Sbjct: 304 TDVASRGLDIPTVDLVINYDIP-----KNSDDYIHRVGRTARKGKRGLAISIMTQYDVQL 358 Query: 562 AKAIGETERRREKQQKYNEEH--------GITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 I + + ++ K +EE + + K+ + +N K + + Sbjct: 359 ILNIEKNIGEKLEELKVDEEEALEIAPKVNKAKKFVKIKMSE-DGSSENFDKQEQDKKSY 417 Query: 614 SRPIVEPDNVPMDMSPKALQQK 635 I E + + K ++K Sbjct: 418 KEFIREQKKLKKVENNKIQEEK 439 >UniRef50_A4S0C2 Predicted protein n=2 Tax=Ostreococcus RepID=A4S0C2_OSTLU Length = 489 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 96/286 (33%), Gaps = 27/286 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + ++ L + + + M + G R+ S + LK Sbjct: 210 TPGKILRWMRERQLACNNMRILVFDEADHM----------MATDGHRVDST---KILKHL 256 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD--QVVRPTGLL------DPIIEVRPVATQV 432 A A Q + SAT + V + Q+ P L + V V + Sbjct: 257 SMNAKAWQVLLFSATFNEAVKSFATKVVPNANQIFIPATELSLDVIKQHRVAVNTVEAKD 316 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L +I + ++ T+ A L + G + + ++ +R ++++ Sbjct: 317 VLLKEKIFPLCDKIGQTIIFVRTREGARRLHASMNASGYKCTVIEGQMEHADRDRVVKEF 376 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADK-EGFLRS--ERSLIQTIGRAARNVNGK 549 R G +L+ ++L GLD+ V+LV D RS + + IGR+ R GK Sbjct: 377 RDGLTKILIATDVLSRGLDVSTVTLVINYDMPVEFHNPRSPNYETYLHRIGRSGRF--GK 434 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + I +AI + K E K + D Sbjct: 435 KGAAFNLILGDSERAICDQIELHFN-HKIPEVAFNDDVTFEKVLED 479 >UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinomycetales RepID=C7NGI5_KYTSD Length = 741 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 79/253 (31%), Gaps = 26/253 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + M + Sbjct: 372 TPGRLIDLIEKGAADLSAVEIAVLDEADHMAE-----------------MGFLPEVTQIM 414 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLS 437 + Q + SAT N + +VD V T + E R + Sbjct: 415 DLMPSGGQRMLFSATLDNGIDQLVENYLVDPVTHSTDDATASVTTMEHRAFLVHPHHKKT 474 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 Q AA + R +V TK A+ + E L E G LH ++ +R ++ + G Sbjct: 475 LTNQIAARDGRTVVFVRTKLGADRVAEQLRESGVFAAALHGGLNQAQRNRVLAAFKDGGL 534 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 VLV ++ G+ + +VS+V +D + + + GR AR G + Sbjct: 535 PVLVATDVAARGIHVDDVSMVLQVDPPAD-----HKDYLHRAGRTARAGGKGVVVTLALP 589 Query: 557 ITPSMAKAIGETE 569 + + + Sbjct: 590 HQKRTMQRLLDQA 602 >UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly similar to Probable ATP-dependent RNA helicase DDX52 (EC 3.6.1.-) n=5 Tax=Chordata RepID=B3KM65_HUMAN Length = 413 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 27/260 (10%) Query: 320 EPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L L D + + + + + ++ + + Sbjct: 105 TTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLAS------------- 151 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP----VATQVD 433 F + + SAT + ++ + + G + +E Sbjct: 152 IFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSET 211 Query: 434 DLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L +R+ VLV + A++L L G V +H++ +R + Sbjct: 212 GKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 271 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R G+ VL+ LL G+D V+LV D F S I IGR R GKA Sbjct: 272 FRAGKIWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIGRTGRAGNKGKA 326 Query: 551 ILYGDKITPSMAKAIGETER 570 I + + + +++ + Sbjct: 327 ITFFTEDDKPLLRSVANVIQ 346 >UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FY34_9SPHI Length = 398 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 79/259 (30%), Gaps = 14/259 (5%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAP 387 L D +VV + + A K+ ++ E L + + Sbjct: 118 LSTDPAIVVATPGRLLDLMDQKLIDLSAFKKVVIDEADELLQLGFMAALFRILGYLPSDK 177 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEIRQ 441 QT+ SAT E + +P +L+ + Sbjct: 178 QTLLFSATFPKELEELVPKVLHQPFRFEVQNREPQQSQIHQYLLFVDKNDKKNLIKYLID 237 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 I+ L+ T T + + L++HG + L+ D R + D + F+ LV Sbjct: 238 HYKID-TALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTATVEDFKNRNFNFLV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GL + ++ V + + + IGR AR + G + D Sbjct: 297 ATDIASRGLHLDDLDHVINYEIP-----DTSEQYMHRIGRTARGIRDGYTYTFCDAEDNP 351 Query: 561 MAKAIGETERRREKQQKYN 579 + ++ + Sbjct: 352 NLIKLQIALKKNIPILSEH 370 >UniRef50_B4RYM4 ATP-dependent RNA helicase, DEAD box family protein n=3 Tax=Proteobacteria RepID=B4RYM4_ALTMD Length = 441 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 69/419 (16%), Positives = 127/419 (30%), Gaps = 21/419 (5%) Query: 234 IVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 ++ I T+ P + + R ++ + T Sbjct: 23 TLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMAQKALSRQDPRALILAPT 82 Query: 291 QFD-LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-G 348 + ++ E N + L GE L + ++V + + Sbjct: 83 RELAKQVFIEAKSMCTGLNLTCSLIV--GGENYNDQVKALRRNPHIIVGTAGRVADHLLD 140 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEALAPQTIYVSATPGNYEL-----E 402 + E L + + + QT+ SAT N EL + Sbjct: 141 KSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLFSATLDNIELKHMTTQ 200 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAE 460 + G V V T I + A VD+ ++ A + +V T T+ + Sbjct: 201 LTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFTATREDTD 260 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + L E L D+ +R ++ G+ +LV +L GLD+ +V LV Sbjct: 261 RIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLSKVGLVVN 320 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D ++ I IGR R G+A + + + + + ++ Sbjct: 321 FDLP-----KNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGLKNHLQYALECSPHD 375 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 E KK V A QN K AK + D+ +++K + Sbjct: 376 EFSASFKGFKPKKKVSKGATAQNGKKRVAKPVKANVKKRVDTMSGEDIGMVPVKRKPRK 434 >UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Saccharomycetales RepID=DRS1_YEAST Length = 752 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 52/326 (15%), Positives = 102/326 (31%), Gaps = 23/326 (7%) Query: 328 YLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L + +V+ I I + D + E L + + Sbjct: 349 MLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPS 408 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLLS 437 Q + SAT + + V T L + +R LL Sbjct: 409 NRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLF 468 Query: 438 EIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + ++ R++V K A L + G V LH + +R++ + + Sbjct: 469 NLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNL 528 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 E VL+ +L GLD+P++ +V D +S + +GR AR G+++ + Sbjct: 529 EVPVLICTDLASRGLDIPKIEVVINYDMP-----KSYEIYLHRVGRTARAGREGRSVTFV 583 Query: 555 DKITPSMAKAIGETERRREKQQKYNEE---HGITPQGLNKKVVDILALGQNIAKTKAKGR 611 S ++I + ++ K + G + + + L N Sbjct: 584 G--ESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVE 641 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIH 637 K + + + L+ K Sbjct: 642 EKEEKEILRAEMQLRKGENMLKHKKE 667 >UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AWJ7_BABBO Length = 783 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 73/420 (17%), Positives = 128/420 (30%), Gaps = 32/420 (7%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + S + P + R V I L R L ++ L + T+R Sbjct: 68 RTGSGKTAAYLAPVVQLLEGHSRTVGVRCLIL--LPTRELALQVSSVLKKFIAFTKRDDA 125 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + + + P L ++ + + +H I + ++ Sbjct: 126 LRSATLIGGESVEGQFGALTFNPDLVVATPGRLSQHIAEKSIDLTLVTHFVIDEADKLF- 184 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 E GF + QT+ VSAT + E + + V Sbjct: 185 ----------EMGFMPDV------YRILSRLPEKRQTMLVSATLPSELTEFVNFGLRNPV 228 Query: 413 VRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + I E + L + + + ER +V TK E L Sbjct: 229 IAQVDKDMQINEQLELRFIYSRTEDKVATLCRLLRNSNDTERTIVFVSTKHHVEFFRALL 288 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G V ++ +D R + + + VLV +L GLD+P V V D Sbjct: 289 AATGITVSAVYGSMDMTARSHQMGLFKSLKTRVLVVTDLAARGLDLPLVDCVINYD---- 344 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE-HGI 584 F S + I +GR AR G AI + A I R+ K + I Sbjct: 345 -FPHSSKLFIHRVGRTARAGRQGLAISIVTMYDFAYAFEILTAIGRKMVISKEQIVGNEI 403 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + ++ ++I + + + + N+ P + I + L+ Sbjct: 404 CAIGTVGDITLLVENIKSIIQDDSDIKSLKMSMDASYNLYYKTRPNPSKNAIDRAQQLLK 463 >UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EF0_THICR Length = 401 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 49/353 (13%), Positives = 103/353 (29%), Gaps = 34/353 (9%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEI-----KEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + P ++ R + + +E KV+ + + Sbjct: 53 AAFVLPALQFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFES--------- 103 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + G+ S + P L + + + + + D + I + M Sbjct: 104 -NVVTGGFASDKQLEILQSKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMG 162 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 + ++ +P + + L+ V+ Sbjct: 163 QGP--DVLALIEAIPGDFQAACFSATLAGSGITK-------FAEEVLDSPEIIQVNAPNE 213 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + + + + LL I + +V K A +L ++L+ Sbjct: 214 KSEQIQQWVYLANDKAHKKALLKAIL-EDETCQSAIVFCNKKDRAIELADWLQNEHISST 272 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH D +R+E + + G+ VLV ++ GLD+ V+ V D Sbjct: 273 VLHGDFIQAKRLEKTQKFKQGKIKVLVATDVAARGLDILNVTHVINYDVP-----YRGDI 327 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 I IGR R G AI + + + E ++ ++ G+ P Sbjct: 328 YIHRIGRTGRAQQVGIAI---NLVERHDITNLQRIEYHLQQSLPVSKIKGLEP 377 >UniRef50_B8LEZ1 Predicted protein (Fragment) n=8 Tax=Eukaryota RepID=B8LEZ1_THAPS Length = 216 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 21/198 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGL-------------LDPIIEVRPVATQVDDL 435 SAT G S + + TG+ + I + + + Sbjct: 11 RALFSATLGPSVRHLSESILRSPIDITTGIHAGIGGNSAAGGASEHIQQELKFVGREEGK 70 Query: 436 LSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L IRQ A VL+ +K A+ L L G RV +H+ R + R Sbjct: 71 LLAIRQLVAEGITPPVLIFLQSKERAQALFGELLYDGIRVDVIHAGRSASAREASVAKFR 130 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 GE VL+ +L+ G+D V+LV D EG + + IGR R G+AI Sbjct: 131 KGETWVLICTDLVARGVDFKAVNLVINYDLPMEGV-----TYVHRIGRTGRAGRAGRAIT 185 Query: 553 YGDKITPSMAKAIGETER 570 + + + I + Sbjct: 186 FFTEADFENLRTIANVMK 203 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 108/310 (34%), Gaps = 22/310 (7%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAP 387 L + +VV + I ++ E L + ++ E Sbjct: 117 LQHNAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAIN 446 QT+ SAT + + + + + I I + + + I + N Sbjct: 177 QTMLFSATYEKNIETFASNILKNPIYKEISDEKEILINQKFYEVTPSEKTALIPALISHN 236 Query: 447 ER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + L+ K E L + L + G + LHSD++ +R E + + +L+ + Sbjct: 237 QAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATD 296 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GL + +V LV D + + + IGR AR G AI + Sbjct: 297 VASRGLHIDDVDLVINYDLSLDEKIHT-----HRIGRTARAGKGGLAISLFTE------- 344 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 E ++ ++K+N P+ + DI + +T GK + + + D + Sbjct: 345 --NEIDKFEIIKEKFNNIKIENPKDIK---DDISFEINSNFRTVFINGGKKQKLRKGDIL 399 Query: 624 PMDMSPKALQ 633 +S L+ Sbjct: 400 GALISEAGLK 409 >UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosaccharomyces RepID=DRS1_SCHPO Length = 754 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 114/356 (32%), Gaps = 23/356 (6%) Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +V+ I + + + + E L + + + + Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + V + VRP + + Sbjct: 437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLI 496 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R ++ +K A + +H + +R+ + D R G+ + Sbjct: 497 YLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCN 556 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 L+ ++ G+D+ + +V +A + + +GR AR G+AI + Sbjct: 557 YLLATDVASRGIDIKGIEVVINYEAP-----ATHEVYLHRVGRTARAGRSGRAITLAGEG 611 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK--SR 615 + K + + + + + K++ ++ + Q + + + R + Sbjct: 612 DRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAE 671 Query: 616 PIVEPDNVPMDMSPKALQQKIH-----ELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 ++ M + + E + + ++ + + A+ + Q+ + Sbjct: 672 RDLKKGENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEE 727 >UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RJU3_TRIAD Length = 512 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 111/399 (27%), Gaps = 40/399 (10%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R+ L D+ ++ L+ + T + ++ I + + E L R K Sbjct: 108 RLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLIHRIK 167 Query: 273 VLLEN------NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP----- 321 E + + + + + Y G + Sbjct: 168 EEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSLCHVSKYRVVGVIGGKKQKLLEKA 227 Query: 322 -----------PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L Y + + D +H+ + + ++ + E +E ++ Sbjct: 228 LETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDE--SFYERSLEILEKIKI 285 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPII 423 Q V AT + + T + I Sbjct: 286 RGGKPMSLDTL--QKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQQDI 343 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ LL +++R + ++ T L YL + + LH + Sbjct: 344 LKLKQTSKAGTLLKLLKER--RHGSTIIFCNTVDSCNWLGHYLAKVDLPLLRLHGGMPPE 401 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER+ + GE+++L+ ++ GLD V V D S I GR Sbjct: 402 ERLIRYDKFQRGEYNILIATDIASRGLDTKNVECVINFDFPI-----SVADYIHRAGRTG 456 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 R + ++ ++ + + +E Sbjct: 457 RVGSKCTGRVISLVSSRKELSLTKLLEEAAARNTVIDEL 495 >UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S9T2_PHYPA Length = 792 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 55/414 (13%), Positives = 110/414 (26%), Gaps = 38/414 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A Q + Sbjct: 259 TPMDRLICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIRQR------F 312 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +G + LS + + L +V +H + + + Sbjct: 313 AGYDMKVALLSRFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDEEQR 372 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-I 422 +G R + + + +SATP L + D + T + Sbjct: 373 FGVRQKERI--------TSMKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRP 424 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDI 480 I + + + I +V + E+ LE + V H Sbjct: 425 ITTHLMEFNPEAVKKAIDFELKRGGQVFYVVPRVKGMEESKAILESYFPDVGIGVAHGQQ 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + G + +L+ +++ GLD+ V+ + I D G + L Q G Sbjct: 485 SATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIEDVQLFGLAQ----LYQLRG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + PS + R + QG D+ G Sbjct: 541 RVGRSDRE---AHAYMFHPSKENLSDDALERLVALEDC----CGLGQGFQLAERDMAIRG 593 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + + +D+ + L + L + +Q + FEE Sbjct: 594 IGSVFGEKQSGDV-------AKIGVDLYLEMLFEG---LSNVDLQKLPEVTFEE 637 >UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma RepID=Q978T9_THEVO Length = 373 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 122/379 (32%), Gaps = 29/379 (7%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ LR EL +E + TG T + P + + Sbjct: 5 EEFNLRNEL----IESIR----GTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAY 56 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 K + L T+ + ++ G + R + G G + Sbjct: 57 LIPIINNTAKEKGIRALILLP-TRELAVQVAKVSEALGKRSGIRTVVVYG-GVSINKQIE 114 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + ++V T+ I + D+ L E L K + Sbjct: 115 LILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVE 174 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEI 439 Q+ SAT + +E + G + ++ + +D V ++ L S I Sbjct: 175 RQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAVSRRERKLRTLFSYI 234 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL-GEFD 498 + E+ ++ + TK A + E L HG+ +H D+ +R + + + G F Sbjct: 235 DKYK--PEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNFGRF- 291 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 LV N+ GLD+ +S + D R + +GR AR G+A + Sbjct: 292 -LVATNVAARGLDIGGISDIINYDVP-----DDPRVYVHRVGRTARMGAAGRAFTIVEDR 345 Query: 558 TPSMAKAIGETERRREKQQ 576 I R + K+ Sbjct: 346 EIGSIDMIRHEARVKMKEI 364 >UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHQ1_9BACT Length = 406 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 92/298 (30%), Gaps = 17/298 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + + + F GE L +VV I + Sbjct: 115 TRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEGQIAALSRTTHIVVATPGRLIDLLKV 174 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 L E L + K EF A +T SAT + Sbjct: 175 KAVDLSTIDTLVLDEADEMLSMGFQDELNKILEFTRGAKRTWLFSATMPKGVTRMIERYL 234 Query: 409 --------VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 VD+ ++ V + + D++ I+ + +V +K + Sbjct: 235 SPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPDEIARFIKAQKGRRG--VVFCRSKAGVQ 292 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ L E G V L D+ +R +++R R +VLV ++ G+D+ ++ V Sbjct: 293 NIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEVLVSTDVSARGIDVEGLAYVV- 351 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 GR AR G ++ + + + + + ++ K Sbjct: 352 ----HHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKRIRELQTELHIKFREIK 405 >UniRef50_P90897 Protein F58G11.2, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=P90897_CAEEL Length = 958 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 90/289 (31%), Gaps = 26/289 (8%) Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D+ + ++ + + + + + + + ++ Sbjct: 516 GRIMDFTVKSHISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIKDAGFME--------- 566 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVATQ--- 431 A QTI SAT + + + ++V G L + + + Sbjct: 567 SAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNLEFFECKGLA 626 Query: 432 -VDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L EI ++ + + ++ K + L G + LH D R ++ Sbjct: 627 EKNAKLREILKQNVNGKTLKTIIFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKL 686 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 I D + ++LV +LL G+D+ ++ V D + + I GR R Sbjct: 687 INDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRK 746 Query: 548 --GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 G + + D + + + Q + + + K Sbjct: 747 ENGLCVSFVDPQSDRDSLLAPKLVELIISQNLPDLKVPDFLDAMAKSSR 795 >UniRef50_A8QEG6 DEAD/DEAH box helicase family protein n=1 Tax=Brugia malayi RepID=A8QEG6_BRUMA Length = 534 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 55/373 (14%), Positives = 123/373 (32%), Gaps = 16/373 (4%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P +Y++ ++ + E + L E L + + Sbjct: 158 AAFLIPVINYISTQKSRTEYGWNTYPYCIV-VSPTKELAEQLYEDTLAFSVGLNCVTVVS 216 Query: 300 LGYCSGIENYSRFLSGRGPGEPP-PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G ++ +R G L DYL L + + + + + + Sbjct: 217 FGEIPRKDSIARIKEGCDIFICTVGRLCDYLQNKILDLRCLHFLVFDEADKLLQMEGFYH 276 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG 417 + + + + R + F + + N G V+ + Sbjct: 277 DLIENLLPKCHEIPNLRKMLFSATDYNDLAELKGECLMPNATKVVVGTLNSVNPFIEQRV 336 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRY 475 L +EV + +L+ EI + N ++++ TKR A + YL G + Sbjct: 337 L---KVEVHEKRDALLNLMQEIYLKRDDNSPPKIIIFVNTKRFASVIACYLSLKGYKAYP 393 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +H+++ R E I L+ + +LV ++ GLD+ +S + + + S S Sbjct: 394 IHANLTAKLRREAIEALQSSDCHILVSTDVAARGLDIKGISHIINYEIPR---PESFLSY 450 Query: 536 IQTIGRAARNVN-GKAIL-YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + +GR R N G+A + + MA + + +++ + + Sbjct: 451 VHRVGRTGRVGNVGRATTFFAQSVDHGMALELYRWLKMNKQEIPVFLLEEVER---QISI 507 Query: 594 VDILALGQNIAKT 606 D+ + + Sbjct: 508 EDLQRKTREKYEK 520 >UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteobacteria RepID=Q1QAQ0_PSYCK Length = 384 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/347 (12%), Positives = 99/347 (28%), Gaps = 29/347 (8%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ--RLTQRTQFDLEMM 297 + + R + E A E + + + LT+ T + Sbjct: 57 ATFLLTIMEALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCI 116 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 ++ P L D + + + + + + M Sbjct: 117 MGGTNYETQQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIP 176 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + Q++ SAT + + + + Sbjct: 177 DIKRLVG---------------RMPPNTDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIE 221 Query: 418 L---LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGER 472 +++ D L + + + E+V++ K + L L + G + Sbjct: 222 PEHKTSELVDQHFYLLTEDQKLEAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQ-GHK 280 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + L D+ +R + ++ + G VLV ++ G+ + +VS V Sbjct: 281 IVMLSGDVIQQKREKYLQRFKDGHASVLVATDVAGRGIHVDDVSHVINY-----TLPDQP 335 Query: 533 RSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R G +I + + A+ + + K +++ Sbjct: 336 DDYVHRIGRTGRAGQTGISISFVSEDDAFNIPALEKHLDTKFKLEQW 382 >UniRef50_Q3LBZ8 Superfamily II DNA and RNA helicase (Fragment) n=3 Tax=Bacteria RepID=Q3LBZ8_9MOLU Length = 125 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + LL + + ++ TK+ +++T YL++ G +H D+ +R ++ Sbjct: 1 DKNKLLVRLLD-LEKDHSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMN 59 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 + R G+ +L+ ++ G+D+ ++ +V D E + + IGR R G Sbjct: 60 NFRKGKIQILIATDVAARGIDISDIKMVINYDLPHE-----DEVYVHRIGRTGRAGKKGL 114 Query: 550 AILYGDKI 557 A Sbjct: 115 AYSLISPR 122 >UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Actinomycetales RepID=D2Q1I3_9ACTO Length = 715 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 70/256 (27%), Gaps = 33/256 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + M T + Sbjct: 396 TPGRLIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLD---------------- 439 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDD 434 Q + SAT N + D V T + Sbjct: 440 -MTPKEGQRLLFSATLDNDVDTIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQS 498 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L +E+ A+ + R ++ TK A+ + L + G LH + R + + Sbjct: 499 LTAEL---ASRDGRTIIFVRTKLGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKD 555 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G VLV ++ G+ + +V LV D E + + GR AR G Sbjct: 556 GSVPVLVATDVAARGIHVDDVGLVVQADPPAE-----HKDYLHRAGRTARA--GGKGAVV 608 Query: 555 DKITPSMAKAIGETER 570 + P + + Sbjct: 609 TLLLPHQRRGMIRMAE 624 >UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Parachlamydiaceae RepID=Q6MBR0_PARUW Length = 407 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 105/370 (28%), Gaps = 39/370 (10%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 L+ I T I + ELA + + + + Sbjct: 57 ALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFA 116 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + + + G++ P L D++ + + + + + + Sbjct: 117 IFGGEDSALQQSKLKHGVQVL---------VATPGRLIDFIYSRQIDLSHVETLILDEAD 167 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M L + + + + QT+ SAT + + Sbjct: 168 EM-----------------LSMGFYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAKHHM 210 Query: 409 VDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D L V +A Q D L ++ + + ++ ++ E + Sbjct: 211 KDPQEVNLILEQASPHLLEHCFVYCLAHQRDHELIQLIKE-NNPTQAIIFCQSRFQVEKV 269 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+ H + V +LH+ ++ R + R G+ +LV +++ GLD +VS V I Sbjct: 270 CRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVATDIVARGLDFSKVSHVFIYQ 329 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + GR R G I AI + ++ + Sbjct: 330 -----LSHESDVYVHRSGRTGRYGKTGVVISLVTSRELPYLNAILKQIKQEPRWIGCPPP 384 Query: 582 HGITPQGLNK 591 K Sbjct: 385 EKQEAAKPRK 394 >UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1 Tax=Desulfotalea psychrophila RepID=Q6APU7_DESPS Length = 498 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 83/270 (30%), Gaps = 30/270 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ + + + I + M + Sbjct: 226 TPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSW--------------- 270 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVD 433 + QT+ SAT + S VD V T ++ + + + + Sbjct: 271 MPKKRDRQTLMFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYN 330 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + I++ +ER+++ K L + L+ + L D+ +R + R Sbjct: 331 VLYNLIKE--NSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFR 388 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 G+ VLV ++ G+ + +S V + IGR R GK++ Sbjct: 389 TGKVKVLVATDVAGRGIHIDGISYVVNY-----TLPYEPEDYVHRIGRTGRAGLAGKSVS 443 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + I E + EE Sbjct: 444 FACEEGSFYLPDIEEYIGAKLDCVLPPEEL 473 >UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RXX8_OSTLU Length = 437 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 94/327 (28%), Gaps = 43/327 (13%) Query: 313 LSGRGPGEPPPTLFDYLPAD--GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + P L + D + + + + + M + + + +P+ Sbjct: 126 FAPEIIVATPGRLLSMVREDARYVDLSGVQTLVMDEADRMLDMGFEPQLNELLGDYGIPA 185 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----------VVRPTGLLD 420 + QT+ SAT L + + V + Sbjct: 186 KNER-------------QTLMFSATFPPQVLRLASYYMRAPPHAARVICGRVGSTVANIK 232 Query: 421 PIIEVRP--VATQVDDLLSEIRQRAAIN-------ERVLVTTLTKRMAEDLTEYLEE--H 469 ++ P ++ LL + A L+ K AE L + + E Sbjct: 233 QVLIETPHLREQKLPYLLRVLEAVEAKRENDGEDVGLTLIFCKQKGTAEWLRQQIVEVTP 292 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 V LH + R+ + G +LV ++ GLDMP+V+ V D Sbjct: 293 SLAVEELHGSLTQGARLRALDAFATGAAKILVATDVAARGLDMPDVNHVINFDMPT--KK 350 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 I IGR R G A + P A+ IG + + E P Sbjct: 351 SEFDDYIHRIGRTGRAGRKGIATSFY---IPGFAEDIGNGPIYENLKLVFEETQNELPGW 407 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSR 615 + D I+ +G R Sbjct: 408 FLQS-RDARGSVGGISSAYDRGFKGGR 433 >UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FX17_SORC5 Length = 632 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 77/278 (27%), Gaps = 30/278 (10%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G E S P L D+L L + + + M Sbjct: 123 GGTSFGAEARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQM--------- 173 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 L + QT VSAT + D V Sbjct: 174 --------LDLGFRDDLEAIVGKMPGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRP 225 Query: 420 DP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + + + D + + A ER LV T+ A +L + L G Sbjct: 226 GAANGDIAHVAHLVLPAERDAAVVNLL-LLAPGERTLVFVRTREGAAELADKLTALGLPA 284 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 R L D++ ER + R G LV ++ G+D+PEV V D Sbjct: 285 RALSGDLEQRERTRTLDAFRSGAITTLVATDVAARGIDVPEVGRVIHADPP-----GDPE 339 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 GR R G ++L A + R Sbjct: 340 IFTHRSGRTGRAGRKGTSVLLVAPFAREHALRLLRRAR 377 >UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fusobacterium RepID=Q8RH90_FUSNN Length = 981 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 95/261 (36%), Gaps = 29/261 (11%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQRAAIN 446 + ++ATP L S + D V T + + EI + Sbjct: 604 DVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNFIKEIILSEISRE 663 Query: 447 ERVLVTTLTKRMAE----DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V + + E ++ E L E+ +V Y+H + + + I+D G DVLV Sbjct: 664 GQVFYIFNSVKRMESKVKEIRELLPEY-IKVSYIHGQMLPRDIKKNIQDFENGNVDVLVA 722 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+ + + I +K G + Q GR R+ Y +T Sbjct: 723 TTIIENGIDIENANTMIIEGVEKLGLSQV----YQLRGRIGRSTK---KSYCYMLTNENK 775 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPD 621 + ++RE+ + + G++ + D G I K G ++ Sbjct: 776 ---TKNAKKREESIREFDNLT----GIDLAMEDSKIRGVGEILGEKQHGAVETF------ 822 Query: 622 NVPMDMSPKALQQKIHELEGL 642 ++ K L ++I +L+G Sbjct: 823 --GYNLYMKMLNEEILKLKGE 841 Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 70/181 (38%), Gaps = 12/181 (6%) Query: 71 AQLYGEMKEFFPENAV-EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS---- 125 + GE+ + ++ + + + D + K + + E L Sbjct: 3 KKFRGEIPFWLKNKKNNLVYICSSNRNIDDYFFVLKDFYKGKILRIKKENEARELKKYNY 62 Query: 126 -ATKAMLERRDVVVVASVSAIYGLGDPDLYLKM-MLHLTVGMIIDQRAILRRLAELQYAR 183 + + +++ S+ D Y + + + G ++ + + +L + + + Sbjct: 63 DLLELINSNEKFIILISLDYFLE----DYYSEANSIFIEKGKNLNIKDLEEKLIDADFEK 118 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 QR + +RG+++DIF + D +R+E F EV+R++ FD + + + Sbjct: 119 TYMVAQRKEYSIRGDILDIFNI-NQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIEL 177 Query: 244 Y 244 Y Sbjct: 178 Y 178 >UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE46_9ALVE Length = 481 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 96/329 (29%), Gaps = 49/329 (14%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 R P + D L L + ++ + + M T + +G+ Sbjct: 164 HPRIVVGTPGRVLDLLQDGSLDLYKVNYAVLDEADRMLDMGFLPSVTDI-FGYLPSPD-- 220 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV------------------DQVVRP 415 Q++ SAT S + D++ Sbjct: 221 ------------KRQSLMFSATWNKEVRRLSRKLMKRERITVTVMGSNETKGNEDELTAN 268 Query: 416 TGLLDPIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERV 473 T + I V+ +++ L + +V+V L K+ A L L ++ V Sbjct: 269 TRITQTIDIVQDRKPKMNRLWYHLGNLCPNKGVWKVIVFALYKKEAAHLERTLRDY-YDV 327 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH D+ + R I+ G+ +LV ++ GLD+ +V+ V F Sbjct: 328 VGLHGDMTQMAREASIKRFTEGQNLILVATDVAARGLDVKDVTGVINY-----TFPLVIE 382 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP-----QG 588 + IGR R G+ K + ++ G+ G Sbjct: 383 DYVHRIGRTGRA--GRTGNAVTIFNADEEKQFAFDLKGLLERCGQPVSEGLAKLANQTGG 440 Query: 589 LNKKVVDIL-ALGQNIAKTKAKGRGKSRP 616 + G + + +++ Sbjct: 441 FKASKKKVHPIYGAFFKDEEEMAKLEAKK 469 >UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgroup RepID=B5X544_DROME Length = 609 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 109/381 (28%), Gaps = 32/381 (8%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 R + E R T + ++E G E R+ L Sbjct: 211 PTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQ 270 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + + + + + + ++ + Sbjct: 271 Q-EPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLD-------------DIYAACSNPTK 316 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP----VATQVDDLLSEIRQRA 443 + SAT + + + + V G+ + E L IR Sbjct: 317 CVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAIRDLV 376 Query: 444 AINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + VLV +K A+ L E L G V +H++ +R ++ R G VL+ Sbjct: 377 RQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSIWVLI 436 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 L+ G+D V+LV D F + S I IGR R G+AI + + S Sbjct: 437 CTELMGRGIDFKGVNLVINYD-----FPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTS 491 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I + + K + + K RP + Sbjct: 492 NLRGIALIIKNSGGTVPE------YMLQMKKVRKSEAKMRAKEPLDREDISTKIRPETKG 545 Query: 621 DNVPMDMSPKALQQKIHELEG 641 D K +++ L+ Sbjct: 546 DEKHKSTKLKKVERTEKILKN 566 >UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR Length = 939 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 34/272 (12%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQR 442 + + ++ATP L + D + T + I+ A + L+S I+ Sbjct: 446 KTSVDVLTLTATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSAYSKERLISAIKYE 505 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVE-------------RME 487 +V + E++ ++LE+ + H T + + Sbjct: 506 LDRGGQVFYVLPRIKGLEEVKDFLEQSFSNVEIAVAHGQHVTKKGNSFLLVKQYSKLLED 565 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + GE +L+ N++ GLD+ + + I D G + L Q GR R Sbjct: 566 TMEQFAQGEIKILICTNIVESGLDIQNANTIIIQDVQLFGLAQ----LYQLRGRVGRADK 621 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + P + + + R + +E G +G D+ G + Sbjct: 622 E---AHAHLFYPDKS-MLTDQALERLAALEECQELG---RGFQLAERDMGIRGFGTIFGE 674 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + NV +D + L + + ++ Sbjct: 675 QQTGDVG-------NVGIDFFFEMLFESLSKV 699 >UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA Length = 640 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 82/266 (30%), Gaps = 52/266 (19%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L ++ + S++ + + M + Sbjct: 215 TPGRLIDFLSSNQTNLRRCSYLVLDEADRMLDMGFEPQIR-----------------TII 257 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 E QT+ SAT + + D G L II+V + Sbjct: 258 EQIRPDRQTLMWSATWPDIVARLVKDYLKDYAQINVGSLKLAANHNILQIIDVCQEYEKE 317 Query: 433 DDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L +R+ A E + ++ TK+ +D+T ++ G R +H D ER + Sbjct: 318 SKLSILLREIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDATLN- 376 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + +V V D F + I IGR R N G A Sbjct: 377 -------------------YVDDVKFVINFD-----FPTTSEDYIHRIGRTGRCNNTGTA 412 Query: 551 ILYGDKITPSMAKAIGETERRREKQQ 576 + S A+ + + + ++ Sbjct: 413 YTFFTPNNASKARDLIDVLKEAKQVI 438 >UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 Tax=Euteleostomi RepID=DDX59_HUMAN Length = 619 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 66/352 (18%), Positives = 116/352 (32%), Gaps = 31/352 (8%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + L ++ G + Y + P L D + + + Sbjct: 290 QAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKI 349 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 V + + M L + L E QTI VSAT Sbjct: 350 VVVDEADTM-----------------LKMGFQQQVLDILENIPNDCQTILVSATIPTSIE 392 Query: 402 EKSGGDVVDQVVRPTGLLD-PIIEVRPV------ATQVDDLLSEIRQRAAINERVLVTTL 454 + + + + V TG + P VR + + L + + VLV Sbjct: 393 QLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVD 452 Query: 455 TKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 K A+ L+E +++ G + +HS+ +ER I++ L G+++V+V +L GLD+ Sbjct: 453 CKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLI 512 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 V LV D S + IGR R NG AI + + + + I + + Sbjct: 513 SVRLVVNFDMPS-----SMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPT 567 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + +K QN T A R + ++ Sbjct: 568 GSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNSQK 619 >UniRef50_A2DP01 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DP01_TRIVA Length = 402 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 98/292 (33%), Gaps = 19/292 (6%) Query: 329 LPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L ++V + + R + E + A Sbjct: 117 LAKRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCAKT 176 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEI 439 Q + SAT + + + + + P + + L++ + Sbjct: 177 HQIMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTSPKSQKEATLVALL 236 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++++ R A LT LE+ V + +R E ++ R + + Sbjct: 237 HHFETS--QIIIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIRI 294 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKIT 558 LV ++ G+D+P + +V D G + I GRA R +G AI + + Sbjct: 295 LVATKVVGRGVDIPNIDVVVNYDLPDNG-----KEYIHRAGRAGRALKSGIAITFVTMES 349 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + +R + ++++E I Q ++K + + L K ++G Sbjct: 350 LQKYQDLEKYLKRELPKFEFDKEKKI--QEISKDLEEAHELAVEKYKKLSRG 399 >UniRef50_Q5KDK3 ATP-dependent RNA helicase ROK1 n=2 Tax=Filobasidiella neoformans RepID=ROK1_CRYNE Length = 620 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 102/334 (30%), Gaps = 37/334 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L + + + + +V + + + D + + Sbjct: 305 TPERLHHLIDSRRISLARTKYVILDESDRLLSSDFLPQVEPIL----------------S 348 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQV 432 A Q ++SAT + + D VR +D + + Sbjct: 349 ACSNPAVQKCFLSATMPAGAESLAKKWLKDGGVRVVVGVKDSAVTTVDQSLLYTGSESGK 408 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L + + L+ + AE+L + L G +V +H +R E I+D Sbjct: 409 LLALRNLISSGQLPYPSLIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTKRDEAIKDF 468 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R+G +LV +L G+D V +V D F ++ S I IGR R GKAI Sbjct: 469 RVGAVWMLVVTEVLARGMDFRGVKVVINYD-----FPQTVPSYIHRIGRTGRAGRPGKAI 523 Query: 552 LYGDKITPSMAKAIGETER-------RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + I R K ++ + G Sbjct: 524 TFFNIEDGPYLRTIANVLRSSGCPVPEYMLDMKKPTKNEKKKLAKAPPKRKAVGGGGRDL 583 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 +A + K ++ K ++ ++ Sbjct: 584 NREAGKKKKQMVEASKKRKMLERKGKGGNEEKND 617 >UniRef50_Q07886 Probable ATP-dependent RNA helicase Dbp45A n=16 Tax=Endopterygota RepID=DDX49_DROME Length = 521 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 62/372 (16%), Positives = 122/372 (32%), Gaps = 45/372 (12%) Query: 314 SGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D+L D + ++ + + M GD Sbjct: 125 RPHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGD-----------------F 167 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV--------VDQVVRPTGLLDPIIE 424 D E Q ++ SAT ++ E S + D V LD Sbjct: 168 DESLSIIERCLPKTRQNLFFSATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYL 227 Query: 425 VRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + L+ +R+ NE V++ T TK+ + L+ L+ LH + Sbjct: 228 LCADYDRDMVLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQ 287 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER+ + + + L+ ++ GLD+P V LV R+ + I +GR Sbjct: 288 KERVAALSRFKSNQIRTLIATDVAARGLDIPSVELVMN-----HMLPRTPKEYIHRVGRT 342 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL------NKKVVD 595 AR G +I P + + E + + + + ++ + Sbjct: 343 ARAGRKGMSISIFRF--PRDLELLAAIEEEINTKLTEHPIDQRMVERIFMQVNVTRRESE 400 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMD-MSPKALQQKIHEL--EGLMMQHAQNLEF 652 + + + R K+ + D M+ + K + K+ E+ + + Sbjct: 401 MQLDNNDFDERAQNYRRKTWIMEGKDPDQMEALYRKKQKDKLREIRRKRKLQHAEPAASE 460 Query: 653 EEAAQIRDQLHQ 664 E A ++D+ + Sbjct: 461 EGKALLQDERFK 472 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 461 e-128 UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 458 e-127 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 448 e-124 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 446 e-123 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 424 e-117 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 422 e-116 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 421 e-116 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 420 e-116 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 418 e-115 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 418 e-115 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 416 e-114 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 413 e-114 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 409 e-112 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 404 e-111 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 401 e-110 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 388 e-106 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 338 5e-91 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 337 1e-90 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 304 1e-80 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 304 1e-80 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 300 1e-79 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 299 2e-79 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 299 3e-79 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 297 9e-79 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 295 2e-78 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 294 6e-78 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 294 6e-78 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 294 1e-77 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 294 1e-77 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 292 3e-77 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 292 3e-77 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 289 3e-76 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 282 3e-74 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 282 4e-74 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 280 9e-74 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 279 3e-73 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 279 3e-73 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 272 3e-71 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 272 4e-71 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 270 1e-70 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 268 5e-70 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 268 6e-70 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 266 2e-69 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 265 4e-69 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 264 1e-68 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 257 8e-67 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 257 1e-66 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 257 1e-66 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 256 2e-66 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 255 5e-66 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 255 6e-66 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 254 6e-66 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 253 1e-65 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 253 2e-65 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 252 4e-65 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 251 7e-65 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 251 7e-65 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 250 1e-64 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 250 2e-64 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 249 3e-64 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 248 7e-64 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 246 2e-63 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 246 2e-63 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 245 4e-63 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 245 4e-63 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 245 6e-63 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 245 6e-63 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 243 1e-62 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 243 1e-62 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 243 1e-62 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 243 2e-62 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 243 2e-62 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 242 3e-62 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 242 4e-62 UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 T... 242 4e-62 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 242 5e-62 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 240 1e-61 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 240 1e-61 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 240 1e-61 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 240 2e-61 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 240 2e-61 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 240 2e-61 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 238 4e-61 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 238 4e-61 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 238 5e-61 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 238 5e-61 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 238 5e-61 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 238 6e-61 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 238 7e-61 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 238 7e-61 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 237 8e-61 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 237 1e-60 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 237 1e-60 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 237 1e-60 UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA 237 1e-60 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 237 1e-60 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 236 2e-60 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 236 2e-60 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 236 3e-60 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 236 3e-60 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 236 3e-60 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 235 3e-60 UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoe... 235 3e-60 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 235 4e-60 UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Ta... 235 5e-60 UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 ... 235 5e-60 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 234 7e-60 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 234 7e-60 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 234 7e-60 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 233 1e-59 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 233 2e-59 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 233 2e-59 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 233 2e-59 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 233 2e-59 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 233 2e-59 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 233 2e-59 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 232 3e-59 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 232 3e-59 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 232 3e-59 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 232 3e-59 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 232 4e-59 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 232 4e-59 UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME 232 4e-59 UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax... 232 4e-59 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 232 5e-59 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 232 5e-59 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 232 5e-59 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 231 6e-59 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 231 7e-59 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 231 8e-59 UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi... 231 8e-59 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 231 8e-59 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 231 9e-59 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 231 9e-59 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 231 9e-59 UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 231 9e-59 UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA 231 9e-59 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 230 1e-58 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 230 1e-58 UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa Re... 230 1e-58 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 230 1e-58 UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Gl... 230 1e-58 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 230 2e-58 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 230 2e-58 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 229 2e-58 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 229 2e-58 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 229 2e-58 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 229 3e-58 UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomyc... 229 3e-58 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 229 3e-58 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 229 3e-58 UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS 229 3e-58 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 229 3e-58 UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoo... 229 3e-58 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 229 3e-58 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 228 4e-58 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 228 4e-58 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 228 5e-58 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 228 5e-58 UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza s... 228 5e-58 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 228 5e-58 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 228 7e-58 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 228 7e-58 UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7V... 228 8e-58 UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=... 227 9e-58 UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida ... 227 1e-57 UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Try... 227 1e-57 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 227 1e-57 UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5... 227 1e-57 UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, s... 227 1e-57 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 227 1e-57 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 227 1e-57 UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 227 1e-57 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 227 1e-57 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 227 2e-57 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 227 2e-57 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 226 2e-57 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 226 2e-57 UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 226 3e-57 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 226 3e-57 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 225 3e-57 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 225 4e-57 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 225 4e-57 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 225 4e-57 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 225 4e-57 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 225 4e-57 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 225 5e-57 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 225 5e-57 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 225 5e-57 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 225 5e-57 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 225 5e-57 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 225 6e-57 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 224 7e-57 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 224 7e-57 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 224 8e-57 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 224 9e-57 UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7... 224 9e-57 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 224 9e-57 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 224 1e-56 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 224 1e-56 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 223 1e-56 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 223 1e-56 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 223 1e-56 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 223 1e-56 UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabd... 223 1e-56 UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana Re... 223 1e-56 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 223 2e-56 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 223 2e-56 UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Ta... 223 2e-56 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 223 2e-56 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 223 2e-56 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 223 2e-56 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 223 2e-56 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 222 3e-56 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 222 4e-56 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 222 4e-56 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 222 4e-56 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 222 4e-56 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 221 6e-56 UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micr... 221 6e-56 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 221 6e-56 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 221 7e-56 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 221 7e-56 UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetaz... 221 7e-56 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 221 8e-56 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 221 9e-56 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 220 1e-55 UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID... 220 1e-55 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 220 1e-55 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 220 1e-55 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 220 1e-55 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 220 1e-55 UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax... 220 1e-55 UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA 220 1e-55 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 220 2e-55 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 219 2e-55 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 219 2e-55 UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-depend... 219 2e-55 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 219 3e-55 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 219 3e-55 UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 T... 219 3e-55 UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=... 219 3e-55 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 219 3e-55 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 219 3e-55 UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 219 3e-55 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 219 3e-55 UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCM... 218 4e-55 UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/M... 218 4e-55 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 218 4e-55 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 218 4e-55 UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH 218 4e-55 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 218 4e-55 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 218 4e-55 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 218 4e-55 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 218 4e-55 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 218 6e-55 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 218 6e-55 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 218 6e-55 UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosa... 218 6e-55 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 218 7e-55 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 218 7e-55 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 218 7e-55 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 218 8e-55 UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Ma... 218 8e-55 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 218 8e-55 UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=... 217 9e-55 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 217 9e-55 UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 217 9e-55 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 217 9e-55 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 217 9e-55 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 217 9e-55 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 217 1e-54 UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7... 217 1e-54 UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Cio... 217 1e-54 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 217 1e-54 UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 ... 217 1e-54 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 217 1e-54 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 217 1e-54 UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax... 217 1e-54 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 217 1e-54 UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, puta... 217 1e-54 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 216 1e-54 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 216 2e-54 UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Ac... 216 2e-54 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 216 2e-54 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 216 2e-54 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 216 2e-54 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 216 2e-54 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 216 2e-54 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 216 2e-54 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 216 2e-54 UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=ro... 216 2e-54 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 216 2e-54 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 216 2e-54 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 216 2e-54 UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n... 216 2e-54 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 216 2e-54 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 216 2e-54 UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukary... 216 2e-54 UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Ta... 216 2e-54 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 216 2e-54 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 216 3e-54 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 216 3e-54 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 216 3e-54 UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Ta... 216 3e-54 UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasi... 216 3e-54 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 216 3e-54 UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase p... 216 3e-54 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 215 3e-54 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 215 3e-54 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 215 3e-54 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 215 3e-54 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 215 4e-54 UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH... 215 4e-54 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 215 4e-54 UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genom... 215 4e-54 UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa Re... 215 4e-54 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 215 4e-54 UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=A... 215 4e-54 UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 215 4e-54 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 215 4e-54 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 215 4e-54 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 215 5e-54 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 215 5e-54 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 215 5e-54 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 215 5e-54 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 215 5e-54 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 215 5e-54 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 215 5e-54 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 215 6e-54 UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E... 215 6e-54 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 215 6e-54 UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, puta... 215 6e-54 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 215 7e-54 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 214 7e-54 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 214 8e-54 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 214 8e-54 UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 214 8e-54 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 214 8e-54 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 214 9e-54 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 214 9e-54 UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=At... 214 1e-53 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 214 1e-53 UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 ... 214 1e-53 UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 214 1e-53 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 213 1e-53 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 213 1e-53 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 213 1e-53 UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-depend... 213 1e-53 UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Try... 213 1e-53 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 213 1e-53 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 213 2e-53 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 213 2e-53 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 213 2e-53 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 213 2e-53 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 213 2e-53 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 213 2e-53 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 213 2e-53 UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=El... 213 2e-53 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 213 2e-53 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 212 3e-53 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 212 3e-53 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 212 3e-53 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 212 3e-53 UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus... 212 3e-53 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 212 3e-53 UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter ... 212 3e-53 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 212 3e-53 UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyos... 212 3e-53 UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 212 3e-53 UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=B... 212 3e-53 UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=... 212 4e-53 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 212 4e-53 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 212 4e-53 UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9... 212 4e-53 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 212 4e-53 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 212 4e-53 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 212 4e-53 UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genom... 212 4e-53 UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa Re... 211 5e-53 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 211 5e-53 UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular or... 211 5e-53 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 211 5e-53 UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepI... 211 5e-53 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 211 6e-53 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 211 6e-53 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 211 6e-53 UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family... 211 6e-53 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 211 6e-53 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 211 6e-53 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 211 7e-53 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 211 7e-53 UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase p... 211 7e-53 UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 ... 211 7e-53 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 211 8e-53 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 211 8e-53 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 211 8e-53 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 211 9e-53 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 211 1e-52 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 211 1e-52 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 211 1e-52 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 210 1e-52 UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 210 1e-52 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 210 1e-52 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 210 1e-52 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 210 1e-52 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 210 1e-52 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 210 1e-52 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 210 1e-52 UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=... 210 1e-52 UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Tr... 210 1e-52 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 210 2e-52 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 210 2e-52 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 210 2e-52 UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limn... 210 2e-52 UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C... 210 2e-52 UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyos... 210 2e-52 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 210 2e-52 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 210 2e-52 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 210 2e-52 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 210 2e-52 UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary f... 210 2e-52 UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales ... 210 2e-52 UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, put... 210 2e-52 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 210 2e-52 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 210 2e-52 UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Ta... 210 2e-52 UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA)... 209 2e-52 UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizos... 209 2e-52 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 209 2e-52 UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Po... 209 2e-52 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 209 3e-52 UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickett... 209 3e-52 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 209 3e-52 UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lambl... 209 3e-52 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 209 3e-52 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 209 3e-52 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 209 3e-52 UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 209 4e-52 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 209 4e-52 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 209 4e-52 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 208 4e-52 UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 208 4e-52 UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=V... 208 4e-52 UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 T... 208 4e-52 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 208 4e-52 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 208 5e-52 UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-depend... 208 5e-52 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 208 5e-52 UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreoco... 208 5e-52 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 208 6e-52 UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase P... 208 6e-52 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 208 6e-52 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 208 6e-52 UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=De... 208 7e-52 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 207 9e-52 UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase p... 207 9e-52 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 207 1e-51 UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 207 1e-51 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 207 1e-51 UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponem... 207 1e-51 UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 207 1e-51 UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=... 207 1e-51 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 207 1e-51 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 207 1e-51 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 207 1e-51 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 207 1e-51 UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intes... 207 1e-51 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 207 1e-51 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 207 1e-51 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 207 1e-51 UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candi... 207 1e-51 UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis... 206 1e-51 UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID... 206 2e-51 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 206 2e-51 UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 206 2e-51 UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase... 206 2e-51 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 206 2e-51 UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Ta... 206 2e-51 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 206 2e-51 UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Lept... 206 3e-51 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 206 3e-51 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 206 3e-51 UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon... 206 3e-51 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 206 3e-51 UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=... 206 3e-51 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 206 3e-51 UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=ro... 205 4e-51 UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase P... 205 4e-51 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 205 4e-51 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 205 4e-51 UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoe... 205 4e-51 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 205 4e-51 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 205 5e-51 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 205 5e-51 UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 205 5e-51 UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 ... 205 5e-51 UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=... 205 5e-51 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 205 5e-51 UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Pr... 205 6e-51 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 205 6e-51 UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=... 205 6e-51 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 204 7e-51 UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=De... 204 8e-51 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 204 8e-51 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 204 1e-50 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 204 1e-50 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 204 1e-50 UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 204 1e-50 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 204 1e-50 UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 204 1e-50 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 203 1e-50 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 203 1e-50 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 203 1e-50 UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID... 203 1e-50 UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4... 203 2e-50 UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genom... 203 2e-50 UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Euk... 203 2e-50 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 203 2e-50 UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 ... 203 2e-50 UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermoph... 203 2e-50 UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum '... 203 2e-50 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 203 2e-50 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 203 2e-50 UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome... 203 2e-50 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 203 2e-50 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 203 2e-50 UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhard... 203 2e-50 UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Euk... 203 2e-50 UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 203 2e-50 UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein... 203 3e-50 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 203 3e-50 UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepI... 203 3e-50 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 202 3e-50 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 202 3e-50 UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=... 202 3e-50 UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transc... 202 4e-50 UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 202 4e-50 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 202 4e-50 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 202 4e-50 UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria g... 202 4e-50 UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 202 5e-50 UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genom... 202 5e-50 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 201 5e-50 UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 ... 201 6e-50 UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 ... 201 6e-50 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 201 6e-50 UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-... 201 6e-50 UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas Re... 201 6e-50 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 201 7e-50 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 201 8e-50 UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 201 8e-50 UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis R... 201 8e-50 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 201 8e-50 UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudona... 201 9e-50 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 201 1e-49 UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 T... 200 1e-49 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 200 1e-49 UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 200 1e-49 UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteri... 200 1e-49 UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi R... 200 1e-49 UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Meth... 200 1e-49 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 200 1e-49 UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax... 200 1e-49 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 200 1e-49 UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Crypto... 200 1e-49 UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CB... 200 1e-49 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 200 2e-49 UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammap... 200 2e-49 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 200 2e-49 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 199 2e-49 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 199 2e-49 UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerot... 199 2e-49 UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 199 3e-49 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 199 3e-49 UniRef50_A0C369 Chromosome undetermined scaffold_146, whole geno... 199 3e-49 UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera ... 199 3e-49 UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 199 3e-49 UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota ... 199 3e-49 UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteob... 199 4e-49 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 199 4e-49 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 198 4e-49 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 198 4e-49 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 198 4e-49 UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminoco... 198 5e-49 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 198 5e-49 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 198 5e-49 UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccha... 198 6e-49 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 198 6e-49 UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Pir... 198 6e-49 UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=... 198 6e-49 UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyos... 198 7e-49 UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis R... 198 7e-49 UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=E... 198 7e-49 UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira... 198 7e-49 UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aq... 198 8e-49 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 198 8e-49 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 198 8e-49 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 198 8e-49 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 198 8e-49 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 198 8e-49 UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 198 8e-49 UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammap... 198 9e-49 UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 197 9e-49 UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Te... 197 9e-49 UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabd... 197 1e-48 UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 197 1e-48 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 197 1e-48 UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 ... 197 1e-48 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 197 1e-48 UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 197 1e-48 UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichop... 197 1e-48 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 197 1e-48 UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmod... 197 1e-48 UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Ba... 196 2e-48 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 196 2e-48 UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella ma... 196 2e-48 UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 196 2e-48 UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphi... 196 2e-48 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 196 2e-48 UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA hel... 196 2e-48 UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 196 2e-48 UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=... 196 2e-48 UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 196 3e-48 UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=... 196 3e-48 UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum... 196 3e-48 UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcr... 196 3e-48 UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH 196 3e-48 UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole geno... 196 3e-48 UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 196 3e-48 UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Se... 196 3e-48 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 196 3e-48 UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacteriu... 195 3e-48 UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteri... 195 4e-48 UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Pla... 195 4e-48 UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanoso... 195 4e-48 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 195 4e-48 UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCM... 195 4e-48 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 195 4e-48 UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gam... 195 5e-48 UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dicheloba... 195 5e-48 UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter... 195 5e-48 UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella gry... 195 5e-48 UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 195 6e-48 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 195 6e-48 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 195 7e-48 UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=... 195 7e-48 UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii Re... 195 7e-48 UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsu... 195 7e-48 UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=c... 194 8e-48 UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 194 8e-48 UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 194 8e-48 UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Pla... 194 8e-48 UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n... 194 8e-48 UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes... 194 9e-48 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 194 9e-48 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 194 1e-47 UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box fa... 194 1e-47 UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 194 1e-47 UniRef50_Q23WN3 Helicase conserved C-terminal domain containing ... 194 1e-47 UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malasse... 194 1e-47 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 193 1e-47 UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasm... 193 1e-47 UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 193 1e-47 UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 T... 193 1e-47 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 193 1e-47 UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteure... 193 1e-47 UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiother... 193 1e-47 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 193 1e-47 UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1... 193 2e-47 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 193 2e-47 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 193 2e-47 UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas ... 193 2e-47 UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleos... 193 2e-47 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 193 2e-47 UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 193 2e-47 UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME 193 2e-47 UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein... 193 2e-47 UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteob... 193 3e-47 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 193 3e-47 UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis R... 193 3e-47 UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase P... 193 3e-47 UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Ol... 193 3e-47 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 193 3e-47 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 192 3e-47 UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 192 3e-47 UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 T... 192 3e-47 UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=De... 192 3e-47 UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorh... 192 4e-47 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 192 4e-47 UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 192 4e-47 UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii Re... 192 4e-47 UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 ... 192 4e-47 UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algo... 192 4e-47 UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=... 192 5e-47 UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lent... 191 5e-47 UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=... 191 6e-47 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 191 7e-47 UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryot... 191 7e-47 UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchi... 191 7e-47 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 191 8e-47 UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 191 8e-47 UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 191 9e-47 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 191 9e-47 UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1... 191 1e-46 UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialiste... 191 1e-46 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 191 1e-46 UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836... 190 1e-46 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 190 1e-46 UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) ... 190 1e-46 UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp... 190 1e-46 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 190 1e-46 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 190 2e-46 UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Br... 190 2e-46 UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulf... 190 2e-46 UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus K... 190 2e-46 UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B... 190 2e-46 UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 190 2e-46 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 189 3e-46 UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing ... 189 3e-46 UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF... 189 3e-46 UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=ce... 189 3e-46 UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano Re... 189 4e-46 UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12... 189 4e-46 UniRef50_C7DHL0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 188 4e-46 UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids ... 188 4e-46 UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum Rep... 188 5e-46 UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira ps... 188 5e-46 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 188 5e-46 UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricom... 188 5e-46 UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Ta... 188 6e-46 UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII ... 188 6e-46 UniRef50_D2KCE8 CNB00610 n=1 Tax=Cryptococcus heveanensis RepID=... 188 6e-46 UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=S... 188 6e-46 UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium d... 188 7e-46 UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 188 7e-46 UniRef50_Q0UN57 Pre-mRNA-processing ATP-dependent RNA helicase P... 188 7e-46 UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteob... 188 8e-46 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 188 8e-46 UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcu... 188 8e-46 UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genom... 188 8e-46 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 188 8e-46 UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 188 8e-46 UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 188 9e-46 UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n... 188 9e-46 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 187 1e-45 UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacter... 187 1e-45 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 187 1e-45 UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 187 1e-45 UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Sti... 187 1e-45 UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergi... 187 1e-45 UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 187 1e-45 UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 187 1e-45 UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 187 1e-45 UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=D... 186 2e-45 UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus t... 186 2e-45 UniRef50_C4QDH8 DEAD box ATP-dependent RNA helicase, putative n=... 186 2e-45 UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12U... 186 2e-45 UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micr... 186 2e-45 UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 186 2e-45 UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP 186 2e-45 UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia ja... 186 2e-45 UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in... 186 2e-45 UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genom... 186 2e-45 UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein... 186 2e-45 UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Ca... 186 2e-45 UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornu... 186 3e-45 UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bac... 186 3e-45 UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 186 3e-45 UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Ka... 186 3e-45 UniRef50_C1B4T7 ATP-dependent RNA helicase n=15 Tax=Actinomyceta... 186 3e-45 UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marin... 186 3e-45 UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa ... 185 4e-45 UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME 185 4e-45 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 185 4e-45 UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S... 185 4e-45 UniRef50_D0L6I3 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 185 4e-45 UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase P... 185 4e-45 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 185 5e-45 UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ... 185 5e-45 UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Para... 185 5e-45 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 185 5e-45 UniRef50_B6KVV0 ATP-dependent RNA helicase, putative n=5 Tax=Alv... 185 5e-45 UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammapr... 185 6e-45 UniRef50_D1HIP4 Whole genome shotgun sequence of line PN40024, s... 185 6e-45 UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax... 185 6e-45 UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=St... 185 7e-45 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 185 7e-45 UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acid... 185 7e-45 UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Te... 185 7e-45 UniRef50_UPI0000D8BB48 WW domain-binding protein 11 (WBP-11). n=... 185 7e-45 UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI... 184 8e-45 UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3... 184 8e-45 UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosa... 184 8e-45 UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE 184 9e-45 UniRef50_C7PZF8 DEAD/DEAH box helicase domain protein n=35 Tax=A... 184 9e-45 UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=The... 184 9e-45 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 184 9e-45 UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyos... 184 1e-44 UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilagi... 184 1e-44 UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA 184 1e-44 UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Tryp... 184 1e-44 UniRef50_C2K9U3 ATP-dependent RNA helicase (Fragment) n=2 Tax=St... 184 1e-44 UniRef50_A0K1H7 DEAD/DEAH box helicase domain protein n=27 Tax=A... 184 1e-44 UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 183 1e-44 UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Pla... 183 1e-44 UniRef50_B0T8G9 DEAD/DEAH box helicase domain protein n=52 Tax=A... 183 1e-44 UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, s... 183 1e-44 UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Para... 183 2e-44 UniRef50_A5KB15 ATP-dependent RNA helicase, putative n=1 Tax=Pla... 183 2e-44 UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 T... 183 2e-44 UniRef50_D1YEX7 DEAD/DEAH box helicase n=3 Tax=Propionibacterium... 183 2e-44 UniRef50_C4Q9A6 DEAD box ATP-dependent RNA helicase, putative n=... 183 2e-44 UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 T... 183 2e-44 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 183 2e-44 UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 183 2e-44 UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=An... 183 2e-44 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 183 2e-44 UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gamm... 183 2e-44 UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Us... 183 3e-44 UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Myco... 183 3e-44 UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 183 3e-44 UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina lo... 183 3e-44 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 182 3e-44 UniRef50_A9UTS4 Predicted protein n=1 Tax=Monosiga brevicollis R... 182 3e-44 UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2... 182 3e-44 UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteri... 182 4e-44 UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 ... 182 4e-44 UniRef50_D0N7S6 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 182 4e-44 UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellula... 182 4e-44 UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 182 4e-44 UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostri... 182 5e-44 UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelo... 182 5e-44 UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encepha... 181 5e-44 UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=u... 181 5e-44 UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II p... 181 5e-44 UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma fl... 181 5e-44 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 181 5e-44 UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorh... 181 6e-44 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 181 7e-44 UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP 181 7e-44 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 181 8e-44 UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Cory... 181 9e-44 UniRef50_Q0IH66 Ddx10 protein n=6 Tax=Euteleostomi RepID=Q0IH66_... 181 9e-44 UniRef50_A8L2W4 DEAD/DEAH box helicase domain protein n=3 Tax=Fr... 181 9e-44 UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Tr... 181 9e-44 UniRef50_A1SQH8 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 181 9e-44 UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya... 181 1e-43 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 181 1e-43 UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Sacchar... 181 1e-43 UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 180 1e-43 UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 180 1e-43 UniRef50_A8R0I3 ATP-dependent RNA helicase (Fragment) n=7 Tax=St... 180 1e-43 UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 180 1e-43 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 180 1e-43 UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarin... 180 1e-43 UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lent... 180 1e-43 UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-... 180 2e-43 UniRef50_B5GG34 ATP-dependent RNA helicase n=14 Tax=Streptomyces... 180 2e-43 UniRef50_Q6BML1 Pre-mRNA-processing ATP-dependent RNA helicase P... 180 2e-43 UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma ... 180 2e-43 UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Ac... 180 2e-43 UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Ta... 180 2e-43 UniRef50_Q9SA27 DEAD-box ATP-dependent RNA helicase 36 n=14 Tax=... 180 2e-43 UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii Re... 179 3e-43 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 179 3e-43 UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinom... 179 3e-43 UniRef50_B7G370 Predicted protein n=3 Tax=Bacillariophyta RepID=... 179 3e-43 UniRef50_A7RHS2 Predicted protein n=1 Tax=Nematostella vectensis... 179 3e-43 UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 179 4e-43 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 179 4e-43 UniRef50_Q54DV7 Putative uncharacterized protein n=1 Tax=Dictyos... 179 4e-43 UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteri... 179 4e-43 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 178 5e-43 UniRef50_A8FF99 ATP-dependent RNA helicase n=71 Tax=Bacilli RepI... 178 6e-43 UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus... 178 6e-43 UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosa... 178 6e-43 UniRef50_Q581A3 ATP-dependent DEAD/H RNA helicase, putative n=5 ... 178 6e-43 UniRef50_A2QY39 ATP-dependent RNA helicase dhh1 n=35 Tax=Eukaryo... 178 6e-43 UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgrou... 178 6e-43 UniRef50_A4RUB4 Predicted protein n=4 Tax=Mamiellales RepID=A4RU... 178 7e-43 UniRef50_D2VE83 Dead box ATP-dependent RNA helicase n=1 Tax=Naeg... 178 7e-43 UniRef50_A7AWS5 DEAD/DEAH box helicase and helicase conserved C-... 178 7e-43 UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1... 178 8e-43 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 178 8e-43 UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacter... 178 8e-43 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 178 9e-43 UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Ta... 178 9e-43 UniRef50_A3FQ30 Putative uncharacterized protein n=2 Tax=Cryptos... 178 9e-43 UniRef50_C5KHX3 ATP-dependent RNA helicase DRS1, putative n=3 Ta... 177 1e-42 UniRef50_C5LT44 RNA helicase-1, putative n=3 Tax=Perkinsus marin... 177 1e-42 UniRef50_D1XKC6 DEAD/DEAH box helicase domain protein n=2 Tax=St... 177 1e-42 UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdema... 177 1e-42 UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 177 1e-42 UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Nept... 177 1e-42 UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 177 1e-42 UniRef50_B9RED5 Dead box ATP-dependent RNA helicase, putative n=... 177 2e-42 UniRef50_C1G4K2 Pre-mRNA-processing ATP-dependent RNA helicase P... 176 2e-42 UniRef50_Q5SM34 ATP-dependent RNA helicase n=4 Tax=Thermus RepID... 176 2e-42 UniRef50_Q6CKI1 Pre-mRNA-processing ATP-dependent RNA helicase P... 176 2e-42 UniRef50_B6AAR3 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 176 2e-42 UniRef50_A4RXF6 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 176 2e-42 UniRef50_C6XFC1 ATP-dependent RNA helicase protein n=1 Tax=Candi... 176 2e-42 UniRef50_B0CQW8 Predicted protein n=4 Tax=Agaricales RepID=B0CQW... 176 2e-42 UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So c... 176 2e-42 UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplant... 176 2e-42 UniRef50_P39517 ATP-dependent RNA helicase DHH1 n=162 Tax=Eukary... 176 2e-42 UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=La... 176 2e-42 UniRef50_C4JU32 ATP-dependent RNA helicase SUB2 n=4 Tax=Onygenal... 176 2e-42 UniRef50_A8LRE5 DEAD/DEAH box helicase domain protein n=57 Tax=c... 176 2e-42 UniRef50_C5L4T1 ATP-dependent RNA helicase dbp-10, putative n=4 ... 176 2e-42 UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intes... 176 3e-42 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 176 3e-42 UniRef50_Q0AR94 DEAD/DEAH box helicase domain protein n=10 Tax=P... 176 3e-42 UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianu... 176 3e-42 UniRef50_P90897 Protein F58G11.2, partially confirmed by transcr... 176 3e-42 UniRef50_B1YL87 DEAD/DEAH box helicase domain protein n=2 Tax=Ex... 176 3e-42 UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 176 3e-42 UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorh... 176 3e-42 UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 176 3e-42 UniRef50_B4L0G8 GI13618 n=8 Tax=Eumetazoa RepID=B4L0G8_DROMO 176 3e-42 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 176 3e-42 UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=To... 175 5e-42 UniRef50_Q12Q06 DEAD/DEAH box helicase-like protein n=14 Tax=Gam... 175 5e-42 UniRef50_C4JDV3 ATP-dependent RNA helicase DDX18 n=2 Tax=Fungi/M... 175 5e-42 UniRef50_D1H1T0 Whole genome shotgun sequence of line PN40024, s... 175 5e-42 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 175 5e-42 UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamil... 175 6e-42 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 175 6e-42 UniRef50_A0M3C7 RhlE-like DEAD box family ATP-dependent RNA heli... 175 6e-42 UniRef50_Q09775 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosa... 175 6e-42 UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA 175 6e-42 UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospir... 175 7e-42 UniRef50_A2DFG9 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 175 7e-42 UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=... 175 8e-42 UniRef50_B7G0R3 Predicted protein n=1 Tax=Phaeodactylum tricornu... 174 8e-42 UniRef50_Q1Q4V2 Similar to ATP-independent RNA helicase DbpA n=1... 174 9e-42 UniRef50_C5KW96 Helicase, putative n=2 Tax=Perkinsus marinus ATC... 174 9e-42 UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=M... 174 9e-42 UniRef50_Q86IZ9 Probable ATP-dependent RNA helicase ddx52 n=3 Ta... 174 9e-42 UniRef50_B6AGA4 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 174 9e-42 UniRef50_Q95XM9 Putative uncharacterized protein n=2 Tax=Caenorh... 174 9e-42 UniRef50_C6LWE2 ATP-dependent RNA helicase-like protein n=2 Tax=... 174 1e-41 UniRef50_C4QLH4 DEAD box ATP-dependent RNA helicase, putative n=... 174 1e-41 UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 174 1e-41 UniRef50_D2SG81 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 174 1e-41 UniRef50_A4S294 Predicted protein n=4 Tax=Viridiplantae RepID=A4... 174 1e-41 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 174 1e-41 UniRef50_C4M8U4 DEAD/DEAH box helicase, putative n=2 Tax=Entamoe... 174 1e-41 UniRef50_B3L6I2 ATP-dependent RNA helicase, putative n=1 Tax=Pla... 174 1e-41 UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=... 174 1e-41 UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Str... 174 1e-41 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 174 1e-41 UniRef50_Q39189 DEAD-box ATP-dependent RNA helicase 7 n=18 Tax=E... 174 1e-41 UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly si... 173 1e-41 UniRef50_UPI000186E757 ATP-dependent RNA helicase DDX54, putativ... 173 2e-41 UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 173 2e-41 UniRef50_C5YS52 Putative uncharacterized protein Sb08g003560 n=1... 173 2e-41 UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Al... 173 2e-41 UniRef50_Q9AW05 DEAD box protein n=1 Tax=Guillardia theta RepID=... 173 2e-41 UniRef50_Q9FNM7 DEAD-box ATP-dependent RNA helicase 26 n=12 Tax=... 173 2e-41 UniRef50_A8MAW4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 173 2e-41 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 173 2e-41 UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetom... 173 2e-41 UniRef50_A2DP01 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 173 2e-41 UniRef50_C1MQ70 Predicted protein n=1 Tax=Micromonas pusilla CCM... 173 2e-41 UniRef50_Q22MC1 Type III restriction enzyme, res subunit family ... 173 2e-41 UniRef50_A3PFY9 DEAD/DEAH box helicase domain protein n=28 Tax=c... 173 2e-41 UniRef50_B5DQ82 GA23405 n=4 Tax=Drosophila RepID=B5DQ82_DROPS 173 2e-41 UniRef50_A8IYU1 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 173 2e-41 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 173 2e-41 UniRef50_C1E0H4 Predicted protein (Fragment) n=2 Tax=Micromonas ... 173 2e-41 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 173 2e-41 UniRef50_Q4N0E9 ATP-dependent RNA helicase, putative n=2 Tax=The... 173 3e-41 UniRef50_O96264 DEAD/DEAH box helicase, putative n=9 Tax=Eukaryo... 173 3e-41 UniRef50_Q5KDK3 ATP-dependent RNA helicase ROK1 n=2 Tax=Filobasi... 173 3e-41 UniRef50_B2W6H0 ATP-dependent RNA helicase SUB2 n=4 Tax=Saccharo... 172 3e-41 UniRef50_B3RR31 Putative uncharacterized protein n=1 Tax=Trichop... 172 3e-41 UniRef50_Q0BUS0 ATP-dependent RNA helicase n=1 Tax=Granulibacter... 172 3e-41 UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family... 172 4e-41 UniRef50_A3BT52 DEAD-box ATP-dependent RNA helicase 29 n=6 Tax=V... 172 4e-41 UniRef50_Q4U8S0 DEAD-box family helicase, putative n=2 Tax=Theil... 172 4e-41 UniRef50_D2UYJ4 ATP-dependent dead box RNA helicase n=1 Tax=Naeg... 172 4e-41 UniRef50_Q7S2N9 ATP-dependent RNA helicase has-1 n=65 Tax=Eukary... 172 4e-41 UniRef50_UPI0001C428F3 ATP-dependent RNA helicase n=1 Tax=Bacill... 172 4e-41 UniRef50_Q9NVP1 ATP-dependent RNA helicase DDX18 n=124 Tax=cellu... 172 4e-41 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 172 5e-41 UniRef50_C7QBM5 DEAD/DEAH box helicase domain protein n=16 Tax=A... 171 5e-41 UniRef50_Q7RYZ7 ATP-dependent RNA helicase dbp-8 n=2 Tax=Sordari... 171 6e-41 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 171 7e-41 UniRef50_C4V744 Putative uncharacterized protein n=1 Tax=Nosema ... 171 7e-41 UniRef50_B8BWZ3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 171 8e-41 UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=... 171 8e-41 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 171 8e-41 UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichop... 171 8e-41 UniRef50_D2UXS9 DEAD-box ATP-dependent RNA helicase n=1 Tax=Naeg... 171 8e-41 UniRef50_Q4N4B1 ATP-dependent RNA helicase, putative n=4 Tax=Euk... 171 8e-41 UniRef50_Q93ZG7 DEAD-box ATP-dependent RNA helicase 38 n=4 Tax=V... 171 8e-41 UniRef50_B3L794 DEAD/DEAH box ATP dependent DNA helicase,putativ... 171 9e-41 UniRef50_A0C321 Chromosome undetermined scaffold_146, whole geno... 171 9e-41 Sequences not found previously or not previously below threshold: >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 445/671 (66%), Positives = 538/671 (80%), Gaps = 6/671 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP + Sbjct: 15 DSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPAL 74 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLAPNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQ Sbjct: 75 VLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQ 134 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY Sbjct: 135 MRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R+D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RF Sbjct: 195 TRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRF 254 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G Sbjct: 255 TVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMG 314 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE L Sbjct: 315 FCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENL 374 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G VV+QVVRPTGL+DP Sbjct: 375 VGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEHQGQ-VVEQVVRPTGLIDP 433 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDID Sbjct: 434 AIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDID 493 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 494 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 553 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AAR++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ Sbjct: 554 AARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDII---D 610 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + G R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 611 GVYGGDVERDG--RSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 422/670 (62%), Positives = 542/670 (80%), Gaps = 2/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS +V+QVVRPTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMS-PKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + ++ PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLRELFI 670 ++ +L+ + Sbjct: 665 EILRLKAQML 674 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 371/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+ Sbjct: 12 DNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTL 71 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I++ Sbjct: 72 VIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDK 131 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ Sbjct: 132 LRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQF 191 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + Sbjct: 192 ERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHL 251 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 ++P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+G Sbjct: 252 VLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMG 311 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ L Sbjct: 312 YTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKML 371 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V+YGFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ VV+Q++RPTGLLDP Sbjct: 372 VDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTET-VVEQIIRPTGLLDP 430 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI Sbjct: 431 EVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIK 490 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGR Sbjct: 491 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 550 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D++++ Sbjct: 551 AARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISIT- 609 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + E M+ K Q+ I +L+ M + A+ L+FE AAQIRD Sbjct: 610 ---------KTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDM 660 Query: 662 LHQLREL 668 + +L+ + Sbjct: 661 VLELKSM 667 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 411/669 (61%), Positives = 509/669 (76%), Gaps = 2/669 (0%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA ++ A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K VD + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKS-VDEVRFI 598 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +A + + G++ + S + L+ + ELE M + A L+FE AA++RD Sbjct: 599 TRVADARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRD 658 Query: 661 QLHQLRELF 669 QL ++R Sbjct: 659 QLFEVRTAL 667 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 424 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 377/697 (54%), Positives = 497/697 (71%), Gaps = 32/697 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+ Sbjct: 1 MSEFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ Sbjct: 61 VMAHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDM 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY Sbjct: 121 LRHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQY 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND RG FR++G+V++I PA +D +R+E F +E+E + L DP+TG+I++++ Sbjct: 181 ERNDLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSAL 239 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +YP H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+G Sbjct: 240 RVYPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVG 299 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKET 360 YC+GIENYSR L+GR GEPP L DY D LLVVDESHVT+PQI GMY GDRARK+ Sbjct: 300 YCNGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQV 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG-------------- 406 LV++GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S Sbjct: 360 LVDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKF 419 Query: 407 ------DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLT 455 V++QV+RPTG++DP + VRP A QVDDLL EI R ++ RV+VTTLT Sbjct: 420 YVQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLT 479 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KRMAEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEV Sbjct: 480 KRMAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEV 539 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 SLVAILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q Sbjct: 540 SLVAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQ 599 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 +YN +H ITP+ + KK + + +A ++ + ++ + + Sbjct: 600 LQYNRQHNITPKPIVKKNSNAIL--SFLAISRKLNDPDLEKAFQAAQ---EIPLSEIPEL 654 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 I +LE M + A+NLEFEEAAQ+RD++ +LR+ + Sbjct: 655 IGQLELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLGH 691 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 364/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDEDG-LRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD-------I 596 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K+ + + Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 597 LALGQNIAKTKAKGRGK---------------------SRPIVEPDNVPMDMSPKALQQK 635 +G + ++ + K R P D KA + K Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +LE M + A L+FEEAA+IRD + L Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSL 730 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 374/692 (54%), Positives = 479/692 (69%), Gaps = 28/692 (4%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V+ Sbjct: 13 PFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVM 72 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++R Sbjct: 73 VQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLR 132 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY R Sbjct: 133 HSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVR 192 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V I Sbjct: 193 NDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYI 251 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GYC Sbjct: 252 FPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYC 311 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLVE Sbjct: 312 NGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVE 371 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V+Q++RPTGL+DP + Sbjct: 372 HGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQV 430 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT+ Sbjct: 431 VVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTL 490 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 491 RRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAA 550 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 551 RNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARE 610 Query: 604 AKTKAK---GRGKSRPI-----------------------VEPDNVPMDMSPKALQQKIH 637 A G G + P P + K L I Sbjct: 611 DADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIE 670 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 671 QMSQQMHQAAADLQFELAARLRDEVGELKKEL 702 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 353/674 (52%), Positives = 473/674 (70%), Gaps = 6/674 (0%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L R DV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL----AL 599 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + ++ V+ + +P+ + EL M + A +E+E+AA +R Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667 Query: 660 DQLHQLRELFIAAS 673 D++ +L A S Sbjct: 668 DEIARLMHGLEAQS 681 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 363/670 (54%), Positives = 475/670 (70%), Gaps = 6/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 + F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P + Sbjct: 6 EQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVL 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +++ NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE+ Sbjct: 66 LISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIER 125 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL AT ++L R DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L Sbjct: 126 LRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLH 185 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + R+D G FRVRG+VID+ P ++ ALRVE F +E+ERL LFD TG+I Sbjct: 186 FVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEY 244 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ EL Sbjct: 245 AFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKEL 304 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GYCSGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK Sbjct: 305 GYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTI 364 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLD Sbjct: 365 LVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLD 424 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P I VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I Sbjct: 425 PEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEI 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q G Sbjct: 485 KSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAG 544 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L Sbjct: 545 RAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTT 604 Query: 601 ----QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + + R +++ + + L EL M + A+++EFE+AA Sbjct: 605 GVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAA 664 Query: 657 QIRDQLHQLR 666 +RD++ +L Sbjct: 665 YLRDEVTKLE 674 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 418 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 345/666 (51%), Positives = 464/666 (69%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P SD LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYSDAT-LRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S VV+Q++RPTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRR-VVEQLIRPTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I DN LE LM + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMDN--------------EALEKLMWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 353/698 (50%), Positives = 474/698 (67%), Gaps = 28/698 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 +PF++ + F P GDQP AI L +G+ +D L +QTLLGVTGSGKTFT+AN+I Q+ T Sbjct: 38 QQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTT 97 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E Sbjct: 98 LIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVE 157 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++Q Sbjct: 158 KLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQ 217 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 218 YDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPIRVSFFGDEIEMIAEFDEVTGDTLSQYDA 276 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ + Sbjct: 277 LPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETM 336 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK T Sbjct: 337 GFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKIT 396 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S VV+QV+RPTGLLD Sbjct: 397 LVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQN-VVEQVIRPTGLLD 455 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 456 PRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDT 515 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+G Sbjct: 516 ATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMG 575 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI---- 596 RAARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ Sbjct: 576 RAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFI 635 Query: 597 ---------LALGQNIAKTKAKGRGKSRPIVEPDNVPMD------------MSPKALQQK 635 + T + + +P + M + + + Sbjct: 636 QAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKI 695 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L+ M+ + +++FE AA++RDQ+ +++ + S Sbjct: 696 LGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLS 733 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 371/682 (54%), Positives = 484/682 (70%), Gaps = 15/682 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT+ Sbjct: 33 MNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTL 92 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L+ NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I++ Sbjct: 93 ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 152 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL+AT A+L R DVVVV+SVS IYG+G+P + ++ + G + LRRL + Sbjct: 153 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSL 212 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ Sbjct: 213 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDA 271 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + IYP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM EL Sbjct: 272 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMREL 331 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK Sbjct: 332 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTN 391 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLD Sbjct: 392 LVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLD 451 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIEVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+ Sbjct: 452 PIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDV 511 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 DT+ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G Sbjct: 512 DTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 571 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K + G Sbjct: 572 RAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAG 631 Query: 601 QNIA-----KTKAKGRGKSRPIVEPDNVPM--------DMSPKALQQKIHELEGLMMQHA 647 + RP VE ++ M MS L++ I + LM + A Sbjct: 632 TEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAA 691 Query: 648 QNLEFEEAAQIRDQLHQLRELF 669 + L+F EAAQ RD++ ++ EL Sbjct: 692 KKLDFIEAAQYRDEVLKMEELL 713 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 343/668 (51%), Positives = 457/668 (68%), Gaps = 7/668 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+ Sbjct: 1 MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I + Sbjct: 61 VISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINR 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 121 MRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQY 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ Sbjct: 181 ERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEEL 239 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+G Sbjct: 240 TVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMG 299 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YC GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L Sbjct: 300 YCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNL 359 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPTGLLD 420 +++GFRLP A DNRPLK EFEAL Q +++SAT E++ +V+Q++RPTGLLD Sbjct: 360 IDFGFRLPCARDNRPLKDSEFEALLNQAVFISAT--PGVKERTQSVQIVEQLIRPTGLLD 417 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I Sbjct: 418 PCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEI 477 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +T+ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IG Sbjct: 478 ETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIG 537 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Sbjct: 538 RAARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVRE 597 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 Q + K A+ + +V A ++ + L M A+ L FEEAA IRD Sbjct: 598 QEVKKDAARVQVAPLLRAADADVRTH---AARKKMVQALRLHMKVCARELRFEEAALIRD 654 Query: 661 QLHQLREL 668 ++ QL+ Sbjct: 655 KILQLQRQ 662 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 314/669 (46%), Positives = 448/669 (66%), Gaps = 11/669 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 S+ E D M + K + Q + + M Q A+ +FEEA +IRD Sbjct: 601 -------ILSEDHSKYYGEKDLSQMKHNKKFIDQMVRK----MTQLAKANKFEEAIEIRD 649 Query: 661 QLHQLRELF 669 L ++ Sbjct: 650 YLIEIGIEL 658 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 350/722 (48%), Positives = 472/722 (65%), Gaps = 68/722 (9%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+ Sbjct: 1 MSSFELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V++ NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ +++ Sbjct: 61 VISHNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDR 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + L+A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + Sbjct: 121 LSLNAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLF 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + + Sbjct: 181 ERQDFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSY 240 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T +P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG Sbjct: 241 TFFPAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELG 300 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK L Sbjct: 301 FCKGIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNIL 360 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN--------------YELEKSGGD 407 VE+GFRLPSALDNRPLKF EF Q +Y SATPG + Sbjct: 361 VEHGFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSG 420 Query: 408 -----------------------------------------VVDQVVRPTGLLDPIIEVR 426 +V+Q++RPTGLL+P I +R Sbjct: 421 EKAPEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIR 480 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P+ Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+ Sbjct: 481 PLKGQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERV 540 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 EI+R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++ Sbjct: 541 EILRALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHL 600 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 NG+ +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ K Sbjct: 601 NGECVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRSEQ-------GQLKL 653 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 A+ +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 654 YAEDDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 Query: 667 EL 668 Sbjct: 708 GE 709 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 323/669 (48%), Positives = 431/669 (64%), Gaps = 17/669 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ D LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHE---- 600 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + + + QKI EL+ M + A+ E+E AAQ R Sbjct: 601 ----DLSGHDYKQNAELYAAKASKNEY------NQKIKELKKKMEEAAKKREYEVAAQYR 650 Query: 660 DQLHQLREL 668 D + +L + Sbjct: 651 DMIVELEAI 659 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 278/601 (46%), Positives = 381/601 (63%), Gaps = 19/601 (3%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ-RAILRRLAELQYAR 183 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + + Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 184 N--DQAFQRGTFRVRGE------VIDIFPAESDDIALRVEL----FDEEVERL--SLFDP 229 D F+RGT++ ++++P + +R+E + + Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEFASVGDGAVKDGMVVRAIQE 239 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + + I+P H+VT +R+ QA I+EEL R + LL K +E RL QR Sbjct: 240 GTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRLQQR 299 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTIPQ 346 D+ MM E G+CSG ENYSR L+GR G PP TL DY+ D LL+VDESHVT+PQ Sbjct: 300 VLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVTLPQ 359 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL K+ Sbjct: 360 LKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGKAEY 419 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 V+ ++RPT + DP IEVR Q+D+LL+E+R R +R LV TLTKR AEDL+ YL Sbjct: 420 PPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLSSYL 479 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L+AD E Sbjct: 480 IEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNADSE 539 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 GFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN ++ Sbjct: 540 GFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNNCVM 599 Query: 587 Q 587 + Sbjct: 600 K 600 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 116/663 (17%), Positives = 230/663 (34%), Gaps = 54/663 (8%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 L+ Q + L + G Q + G++ S +T +A + L P Sbjct: 1 MAEKALSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLC 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ + A ++ +++ P+ V F P+++ + + + + Sbjct: 61 VVTHSIQQARRIAEDLQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLA 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 RL + R V VV ++ A+ P + + L VG ++ I RL L Sbjct: 108 QRLDVLSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y R G + +RG ++D++P + + R+E FD+E++ + LFD T + R Sbjct: 168 YQRTPMVEAPGQYSLRGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDR 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P + E + Q E+++E A R+ LL++ RL + LE ++E Sbjct: 227 YAAGPAREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEG 286 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + G+E + F +LF YL + ++ DE + Sbjct: 287 IWVEGLEQFQNFFYPDQV-----SLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVH 341 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G LP+ + + E LA + A V + Sbjct: 342 LLEAGSVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKKIER---------VTVEDTIQF 392 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + P ++D L E++ VL+ + + + + L ++G + + Sbjct: 393 NAKNMHPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG-- 450 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 I +L G V VG+ L G ++ + LV I D + G + Sbjct: 451 -------IDAELHPGT--VAVGVGQLEAGFELVQARLVLITDLEIFGREKRP-----RKP 496 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R + + + D + R + G++K + I G Sbjct: 497 RKSAREGQRIDSFVDLALGDYVVHVNHGIGRYMG------VEKLEVGGVHKDYLVIRYAG 550 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 ++ + V + V + + +++ + + A +L AA+ Sbjct: 551 EDRLYVPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAAR 610 Query: 658 IRD 660 Sbjct: 611 ESK 613 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 76/482 (15%), Positives = 146/482 (30%), Gaps = 49/482 (10%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVS--TIPRFTIYPKTHYVTPRERIVQAMEE 262 A S D + E E P + ++ + + Sbjct: 617 AYSADTPWQKEF---EEAFPYEETPDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVA 673 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 I+ A + + Q E + GY ++ SRF S + Sbjct: 674 IRAAFKAVQDGKQVAILVPTTILAQQHYNTFRERFS--GYPVRVDVLSRFRSPKEQKAS- 730 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + L + + +V +H + + + + Sbjct: 731 ---LEGLKSGEVDIVIGTHRLVSNDVSFKDLGLLIIDEE--------QRFGVAHKEKIKH 779 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQ 441 + +SATP L S + D + T D V +L+ +R+ Sbjct: 780 LKENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRR 839 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDV 499 +V + + L R + H + + +++ D GE+D+ Sbjct: 840 ELNRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDI 899 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV ++ GLD+P V+ + + AD G + L Q GR R+ A + Sbjct: 900 LVCTTIIETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNR-LAYAFFT---Y 951 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K + E +R + E G G + D+ G + + Sbjct: 952 RKDKVLTEVAEKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHG-------Q 1001 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQLR--ELFI 670 +V D+ + L++ I EL+G + A F + D L +++ + + Sbjct: 1002 MASVGFDLYCRLLEEAIQELKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQFYKRLL 1061 Query: 671 AA 672 AA Sbjct: 1062 AA 1063 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 304 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 119/665 (17%), Positives = 230/665 (34%), Gaps = 64/665 (9%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 N++ E + GL G L G+ K +A ++ + P +V+ P Sbjct: 3 NNSILQIIRDSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGS 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A +L +++ F+P ++ Y+P S+ + + + + RL Sbjct: 62 EEAQRLAADIESFWPGEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVL 108 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ R ++V V + P L+ L L VG IID+ A+L++L L Y R + Sbjct: 109 TNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEV 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G VRG +IDIFP +++ +R+ELF +E++ L FDP++ + V+ + + P Sbjct: 169 VEAPGQLAVRGGIIDIFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPA 227 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + P + E ++ L + + L R Q + M+ + G Sbjct: 228 QEVLPPPDLGPGLETLKAEF--SQTYATLRQRQPQAARELKDRVQELIAMLEAGSWPGGS 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 F R TLF+Y LLV+D+ + ++ + ++ G Sbjct: 286 SQLQPFFYPR-----QATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGL 340 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LPS + + + G+ I Sbjct: 341 ALPSQGQAYLDSADLERLWQRYQRLYFSLLPRRVPG------SNP-RPAVGISAQTI--P 391 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 ++ ++ E+ + R+++ L + L E G R Sbjct: 392 AFQGKLGLVVEELTRWRREGYRIILMVADPNRVVALRQALAEQGIEALT-----HPEARD 446 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + G +V++ LR+G PE+ L I D + G +R + R Sbjct: 447 TL------GRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRRP-----RRVKTPREG 495 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + K + D + R Q+ + G+ K + I G++ Sbjct: 496 S-KISSFTDLKEGDYVVHVHHGIGRYLGLQQLD------VGGVKKDYLLIQYAGKDRL-- 546 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 P+ + V + + +++ L G ++ E ++ +L L Sbjct: 547 -------YVPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQELLDLY 599 Query: 667 ELFIA 671 A Sbjct: 600 ARREA 604 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 116/413 (28%), Gaps = 35/413 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + Sbjct: 648 PMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFPVKI 707 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + + + L + +V +H + + Sbjct: 708 AVLSRFCSPREQKVV------VEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEE--- 758 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L S V D + T D Sbjct: 759 -----QRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPV 813 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V +L+ IR+ +V + + + ++++ RV H + Sbjct: 814 QTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMG 873 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D G +DVLV ++ GLD+ + + + ++D G + L Q GR Sbjct: 874 EEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNFGLAQ----LYQLRGR 929 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R A Y K +GE +R + G G + D+ G Sbjct: 930 VGRTNR-LAYAYFT---YRPDKVLGEIAEKRLAAIREFTAFG---SGYKIALRDLQIRGA 982 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + V D+ + L++ + +L+ + E Sbjct: 983 GNFLGPEQHG-------HMVAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALAE 1028 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 304 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 111/652 (17%), Positives = 243/652 (37%), Gaps = 59/652 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F ++ + I+ +EE L+ G+T S K ++ + +V+AP++ A Sbjct: 2 FTRQIEELKEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++ F + + P + K + ++ + RL K + Sbjct: 62 RKIYEDLYSF--------------NFGNASLFPKREALFYKIDAASQEVVSQRLQVIKKL 107 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E VV S+ A G P DL+ K +G+ ++ +++ L + Y R Sbjct: 108 SEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEG 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+F +++ R+ELFD+E++ + FD +T + + I + I+P T + Sbjct: 168 KGQFSVRGGIIDVFSP-TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEF 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E I + + + L + + ++ K ++L Q+ + +E + E I Sbjct: 227 IAGAEHIKKGISAVSNYLNSYLSKIKKS-KSGIAEKLQQKFEEIMEEITESKRVENIYEL 285 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 286 IDYFYDDVY-----SIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + + + + T E +V+ V R + Sbjct: 341 EQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFH 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ +++ +VL+ + + A L + L+ + + Sbjct: 392 GNMDILVDDLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSE 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D++ G V++ + +G + + I D + G + R + N Sbjct: 443 YDIQKG--QVVIYPASVSKGFEYVDAKFAVISDGEIFGQTK-------RRKRTVKIKNAD 493 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + S + + E +K I G+ + + I+ G + Sbjct: 494 KIKSFTELEIGSYVVHVNYGIGKYEGIEK------IKVDGIVRDYLKIIYAGGDTLFVPV 547 Query: 609 KGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + V P + P + + + + + A++L A + Sbjct: 548 EQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKR 599 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 110/658 (16%), Positives = 232/658 (35%), Gaps = 61/658 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 F + + +E+ ++ + G S K I + + +V+ N Sbjct: 2 KTFTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDI 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++Y ++K + P+ D I + R+ K Sbjct: 61 KAKEIYEDLKLYDRN---------------VYLYPAKDIIFYSADIHGNAIVRERMRILK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +LER+ + VVA++ P D ++ + I+ + +L L Y R Q Sbjct: 106 NLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + IYP + Sbjct: 166 ENPGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPAS 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E + + ++ E L K E R+ Q + E + L ++ Sbjct: 225 EIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 +Y RF + + FDY D ++ DE + + ++ +E G+ Sbjct: 285 SYIRFFYDKTC-----SFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LPS +D E L+ + + +T + ++ + +V ++P Sbjct: 340 ILPSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAA---KKKVDITVKSVNP----- 391 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L+ +++ RV++ + ++ A L + L ++ Y Sbjct: 392 -YNNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIYS---------E 441 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 ++ R GE ++V + G + P + LV I ++D G + ++ + Sbjct: 442 DVDRIPVKGE--IVVMHGSVHRGFEYPLIKLVIISESDIFGAEKKKKK-------KKPSY 492 Query: 547 NGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 GK I + D Y I ++K + + G + Sbjct: 493 EGKQIQSFTDLNIGDYVV------HENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVLY 546 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPK---ALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 A G + D ++ + +++G + + A+ L A + Sbjct: 547 ILATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVELYATRQAK 604 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 132/440 (30%), Gaps = 43/440 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A + Q + Sbjct: 639 KRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVVFLVPTTILAQQHYNTFSQR 698 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M L + L L ++ +H + + Sbjct: 699 MMNFPIS------VDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRVLSKDIQFKNLGLL 752 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S + D V Sbjct: 753 IIDEEQRFGVT--------HKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDMSVLEE 804 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 +D + V D+++ I + A +V +++T + V Sbjct: 805 PPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRVNGLDEITNTIARLVPDANV 864 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + + +I+ + GE DVLV ++ GLD+ V+ + I +AD+ G + Sbjct: 865 AFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNADQLGLSQ--- 921 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + + K + E +R + K E G G + Sbjct: 922 -LYQLRGRVGRSNR---TSFAFLM-YKRDKLLKEVAEKRLQAIKEFTELG---SGFKIAM 973 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH-----AQ 648 D+ G + + V D+ K L + L+G + + Sbjct: 974 RDLEIRGAGNLLGAQQSG-------HMEAVGYDLYCKMLNDAVKGLKGEISDEDTFDTSI 1026 Query: 649 NLE---FEEAAQIRDQLHQL 665 +++ F + I++++ +L Sbjct: 1027 DMDMDAFIPSTYIKNEMQKL 1046 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 254/611 (41%), Positives = 352/611 (57%), Gaps = 37/611 (6%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 + + F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ Sbjct: 71 NGVRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVV 130 Query: 64 APNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 PNKTLAAQ+ E++ + E + VE FVS++ Y PE+Y S+ + EK ++++ ++ + Sbjct: 131 VPNKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDAL 188 Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVG---MIIDQRAILRRL-A 177 R AT+A++E + VVVASVS +YGLG P Y+ L + +G + +L Sbjct: 189 RHRATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD 248 Query: 178 ELQYARN--DQAFQRGTFRVRGE-------VIDIFPAESDDIA-LRVELFDEEVERLSLF 227 +L Y R +RG ++ I I+P + +RV D V Sbjct: 249 DLLYERVMPYMDIERGQYKTTAAPDDDNCFTITIWPPYLESALDVRVRGDDGVVVACEA- 307 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + TI+P+ HY+TP ER+ +A+ IK EL + K L +E RL Sbjct: 308 -----RGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEADRLE 362 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL--------PADGLLVVDE 339 QRT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV DE Sbjct: 363 QRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLVADE 422 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP--- 396 SHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATP Sbjct: 423 SHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATPGDI 482 Query: 397 -GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + KS +VD VVRP+G+LDP + V Q++ L + ++A I ER LV LT Sbjct: 483 ETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVCVLT 542 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+P V Sbjct: 543 KADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDLPSV 602 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 SLVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR KQ Sbjct: 603 SLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRRVKQ 662 Query: 576 QKYNEEHGITP 586 K+N ++ + P Sbjct: 663 HKHNVDNNLVP 673 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 124/653 (18%), Positives = 238/653 (36%), Gaps = 58/653 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 E ++ +G+ G + + G+ G+ F N++ + + +++ + Sbjct: 2 KLSDLLLSSEKTEKIMKGINQGQ-NLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + Y ++ PE V + P S+ + + R+ ++ Sbjct: 61 LNRYYEDLIRMMPEEKVLLY-------------PESEVLPHEQIVPDLAETAQRIRVLQS 107 Query: 130 -MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +++ V++ + +A+ P + K + L VG ID +L Y R + Sbjct: 108 VITDKKPAVLLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDIFP S + R+ELF +E++ + F+P T + ++ + I P Sbjct: 168 ENPGEFSIRGGIIDIFPL-SVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAR 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +I +A+ IK + L ENN E L ++ LE + E G E Sbjct: 227 EIIVSPRQIKKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSE 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + TL DYLP D ++ D++ T +I G + + TL+E G Sbjct: 287 QFLPYYYPEL-----HTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP+ N + + L S+T N EL + V P Sbjct: 342 LPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWVKDF--------EKVSFTTRSVEP 393 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++D +R+ RV VT + A + YL+E+ V + R E Sbjct: 394 YHGKLDLFAERVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF--------RREE 445 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 R+ ++V L EG + +++L + + G + +R + I N Sbjct: 446 FSRE------RIIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRRQLNDI------EN 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G I + KY + QG +K + + G++ Sbjct: 494 GVKISSI-----DELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVP 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + DN P + ++ +++ + + A L A + Sbjct: 549 TDQFNLVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAER 601 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 64/425 (15%), Positives = 128/425 (30%), Gaps = 38/425 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q E M Y Sbjct: 647 PMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKN--YPI 704 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF + + L A + ++ +H + + + Sbjct: 705 NIEMISRFKTP----AEQREVLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEE--- 757 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + ++ATP L + V D V T + Sbjct: 758 -----QRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMALVGVRDMSVIETPPENRYPI 812 Query: 425 VRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 + + + +R+ +V ++ +++ RV H ++ Sbjct: 813 RTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATMIKKLVPECRVAVAHGQMN 872 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D ++DVLV ++ GLD+P V+ + + AD+ G + L Q GR Sbjct: 873 EHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRADQMGLAQ----LYQLRGR 928 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ I Y + + + E +R + K G G + D+ G Sbjct: 929 VGRSNR---IAYAYLL-YEKDRVLPEVAEKRLRAIKEFTNLG---SGFKIAMRDLEIRGA 981 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH---AQNLEFEEAAQI 658 + +V + K L+ + EL+G +E + A + Sbjct: 982 GNLLGPEQHG-------HIASVGFSLYCKLLEGAVEELKGKEKDKGITRVEIELDIDAYL 1034 Query: 659 RDQLH 663 D+ Sbjct: 1035 PDEYI 1039 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 297 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 120/672 (17%), Positives = 240/672 (35%), Gaps = 63/672 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 + L+ GL Q + G++ + K+F IA ++ +++ +++ Sbjct: 6 NGIKEWLLQPLINTPEFIDLQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIIT 65 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 + AA L ++K P+ V F P+ + + ++ I + R+ Sbjct: 66 ASDQEAAGLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRM 112 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +++ + V++A V A+ P + L L VG + ++ L E Y R Sbjct: 113 EVLESLCRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYER 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F VRG ++DI+P + +RVE FD+EV+ + +F+P T + + + I Sbjct: 173 VNLVESHGQFSVRGGILDIYPI-TGINPVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P V + +A + + +E RR+ L + + L R + L+ +++ Y Sbjct: 232 FPVREMVVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNL-SRCEEVLDNISQAKYF 290 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE Y + TL +Y+ A+ L++VDE + R L++ Sbjct: 291 DSIEQYLPYFYDEDI-----TLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMK 345 Query: 364 YGFRLPSALDNRPLKF-EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 G LP + + IY S P L +S V V Sbjct: 346 AGRVLPGQFKGYTDWAGIHKQITGFRAIYFSFLPRQASLWRSCNTVNFPVK--------- 396 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 ++ +V+ L EIR V++ A L L ++ YL D+ Sbjct: 397 -TMQNFMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSE 455 Query: 483 VERMEIIRDLRL---------GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + + D+ G +++ L G ++ L I + + G + Sbjct: 456 YPHLNVQEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPS 515 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 Q + K L+ + T + R Y+ +T + + Sbjct: 516 VQRQRV-------QDKMELFAELKTGDYVVHVNHGIGR------YDGVVQLTIGDVKRDY 562 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + G++ P + + + + + K+ L G ++ E Sbjct: 563 LLVKYAGEDKL---------YIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKSKVKE 613 Query: 654 EAAQIRDQLHQL 665 ++ +L L Sbjct: 614 AVKEMAQELLAL 625 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 62/432 (14%), Positives = 117/432 (27%), Gaps = 37/432 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q E Sbjct: 667 KADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKER 726 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + LS + L + +V +H + Sbjct: 727 FAKYPVN------IAMLSRFITARRQRQIVQELLLGQVDIVIGTHRLVQDDIKFKDLGLV 780 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S V D + T Sbjct: 781 VVDEEQRFGVT--------HKEKLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLET 832 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 D I V + ++ IR+ +V + + +L+ Sbjct: 833 PPEDRIPVQTYVLEEEPVIVREAIRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAI 892 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + ++ D +FD+L+ ++ GLD+ V+ + + DAD G + Sbjct: 893 AIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQ--- 949 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R A Y K + E +R + E G G + Sbjct: 950 -LYQLRGRVGRTNR-LAYAYCTF---RGDKVMSELAEKRLSAVREFTEFG---SGYKIAM 1001 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LE 651 D+ G + V D+ + L++ + E +G +E Sbjct: 1002 RDLEIRGAGNILGPEQHG-------HIAAVGFDLYCRLLEEAVLEAKGGENAKPIETLVE 1054 Query: 652 FEEAAQIRDQLH 663 A I D+ Sbjct: 1055 LPVTAYIPDEYV 1066 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 115/657 (17%), Positives = 236/657 (35%), Gaps = 68/657 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ + +E + L G+ + K+ + +++ ++ N+ A Sbjct: 6 LLAPIRNSTDYIQVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEA 65 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q+Y ++K + + A+ ++PS + + + + ++ R+ A + + Sbjct: 66 RQIYEDLKFYAGDRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETI 111 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LE D +VV ++ L P Y K + VG +D ++ L Y R D + Sbjct: 112 LEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEE 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F +RG++IDIFP+ S ++ +RVELF +E++ + F P T + + I +Y Sbjct: 172 RGQFSIRGDIIDIFPS-SAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKET 230 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ ++ K L + K L + E + LG G+E Sbjct: 231 TIESFDVEAVILKLNQDYKNISKKLNQAAKE----NLKNSLEELSEKLRSLGNFRGVEKL 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 ++ E L Y + L ++DE + G + + LVE G P Sbjct: 287 LPYIY-----EKTTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFP 341 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + L + I + + ++++ RP + Sbjct: 342 GQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFPPKEIINFDTRP---------MASFH 392 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ L EI++ ++ + TK L E+L E YL + Sbjct: 393 GKLELLGKEIQRLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK--------- 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +DL GE +L LR G + + I D + G + +R + + + Sbjct: 444 QDLVTGEVVIL--SGNLRRGFEYVKNKFAVITDYEIYGVHKQQR-------KTNKTKDAS 494 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + D G + ++ + +G+ K + I G+ Sbjct: 495 PIKSFIDLKVGDYVVHEGHGIGKYIGIEE------LKVEGVKKDYLKIRYSGEGFL---- 544 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P + D + + K+++L G + + + +L +L Sbjct: 545 -----YVPTDQMDLIQKYIGSDDAPPKLNKLGGSEWAKTKTKVKKAIEDMAGELIKL 596 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 126/421 (29%), Gaps = 37/421 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + I+ A + Q + Sbjct: 638 KQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVPTTILAQQHYNTFKQR 697 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++ + + + + + + + + +V +H + + Sbjct: 698 FSDFPITVEMLSRFKNATA------QKKIIENIRTGNVDIVIGTHRLLSKDIEYKDLGLL 751 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + AL + ++ATP L S + D V Sbjct: 752 IVDEEQRFGVKHKEALKKLKKSI--------DVLTLTATPIPRTLHMSMIGIRDMSVIED 803 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 + V ++ I + A +V + + L+E + V Sbjct: 804 PPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANNLKELVPQGRV 863 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E +I+ + GE+D+LV ++ G+D+ V+ + I DADK G + Sbjct: 864 AVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQ--- 920 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + K + E +R K K E G G + Sbjct: 921 -LYQLRGRVGRSYRQGYAYLMYEKD----KILSEVAEKRLKAIKEFTEFG---SGFKIAM 972 Query: 594 VDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 D+ G + + G + D+ K L++ + E+ G + ++ Sbjct: 973 RDLEIRGAGNLLGGEQHG--------HMAAIGYDLYVKLLEETVGEMRGEYTEKFEDTTI 1024 Query: 653 E 653 E Sbjct: 1025 E 1025 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 111/678 (16%), Positives = 225/678 (33%), Gaps = 72/678 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAP 65 + + + L + L+ G + G S K + + +V+ Sbjct: 1 MENPLLE----LQEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTY 56 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + T A ++Y +++ F P+ D + + R++ Sbjct: 57 DDTRAKEIYDDLRSFT---------------SRVWLYPAKDLLFYSADIHGNLMARQRIA 101 Query: 126 ATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 + ++E R+ VVV ++ + L + + + G +ID RL + Y R Sbjct: 102 VLRRLMEDREGVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERV 161 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Q G F +RG ++DIFP ++++ +R+EL+D+EV+ + FD + + V + TIY Sbjct: 162 AQVDGMGQFSIRGGIVDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIY 220 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V +++ + +++E K L E +K E R+ ++E Sbjct: 221 PAAEVVLSADQLAAGIRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIG 280 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G++ Y R+ + +Y P ++ +DE + + R +E Sbjct: 281 GLDAYIRYFCPDTV-----SFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLE 335 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G+ LP E A + V T + + G V + ++ Sbjct: 336 KGYLLP-GQTELLYPAAEILARMQKPYAVMLTGLD--QKLPGMKVNQKFSIDVKNVN--- 389 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI--- 480 + L+ ++ + RV++ + ++ A L L E+ R Sbjct: 390 ---SYQNSFEILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGES 446 Query: 481 --------------DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + +R +R GE +LV L G + P + V I + D Sbjct: 447 GNAGGEGAGSADTGNPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMF 504 Query: 527 GFLRSERSLIQTIGRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 G + + N GKAI + + + +K Sbjct: 505 GVEKKRKRRK------KTNYQGKAIQSFTELSVGDYVVHEEHGLGIYKGIEKV------E 552 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGL 642 + K + I A + + + + + G Sbjct: 553 RDKVIKDYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEWNKTKTRVRGA 612 Query: 643 MMQHAQNLEFEEAAQIRD 660 + + A++L AA+ Sbjct: 613 VQEIARDLVKLYAARQEK 630 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 61/413 (14%), Positives = 118/413 (28%), Gaps = 37/413 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + ++ A + + Q ++ Sbjct: 665 KKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQR 724 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + LS + L + +V +H + + Sbjct: 725 MKDFPV------RVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLL 778 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L S + D V Sbjct: 779 IIDEE--------QRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEE 830 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 +D V + + I + A N +V +++ ++ Sbjct: 831 PPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVAGRVQALVPDAVV 890 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E I+ D GE DVLV ++ GLD+ + + I DAD+ G + Sbjct: 891 TFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQ--- 947 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ K K + E +R + + E G G+ + Sbjct: 948 -LYQLRGRVGRSNRTSYAFLMYKRD----KLLREEAEKRLQAIREFTELG---SGIKIAM 999 Query: 594 VDILALGQNI-AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 D+ G + G + V D+ K L Q + L+G ++ Sbjct: 1000 RDLEIRGAGNVLGAEQHG--------HMEAVGYDLYCKMLNQAVLALKGETLE 1044 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 106/658 (16%), Positives = 247/658 (37%), Gaps = 64/658 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + G++ + G++ S +++ I V +P +++ + Sbjct: 4 DGLMEPIRKSSEFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDV 63 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + P+ Y P+ + +++ + RL + Sbjct: 64 EARKLYEDLCFYLPQ---------------VYYFPTKEVVFYNIDAISGDLRWERLKVIR 108 Query: 129 AMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ML +++ V ++ +LY + ++VG +D + I +L + Y R + Sbjct: 109 EMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F +RG ++DI+ S + RVELF +EVE + F+ + + + + I+ Sbjct: 169 ERRGQFSIRGGIMDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + RERI +IKE+LA+ + L EN +++ T +LE + E I+ Sbjct: 228 EIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESID 287 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ + + DY + ++VD+ ++ +Y + +E G Sbjct: 288 SFLPYFYEHTS-----SFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP + E + + I + +V+ Sbjct: 342 LPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLIVNFTQITLNN--------- 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ L+ EI+ + + + ++L+ + T+ E L + L ++G Y + Sbjct: 393 YQGKLELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RD 442 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ +++ GE + G L +G + PE+ + I D + G + + I + + Sbjct: 443 VVNEIKPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAKRKN-----IRKTNKKGT 495 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K + + + + + QG K ++++ ++ Sbjct: 496 SKIKSFTELKPGDFIVHVNHGIGVYKGI------KQLELQGHKKDYLELVYECEDKL--- 546 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D V + + KI++L + + ++ + L +L Sbjct: 547 ------YVPVEQLDMVQKYIGSEGKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIKL 598 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/460 (15%), Positives = 138/460 (30%), Gaps = 42/460 (9%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++E D L+ + + + + ++ A Sbjct: 620 FEDEFPYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQV 679 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q ++ ++ + I+ SRF + + + V Sbjct: 680 AFLVPTTILAQQHYNNFIQRFSD--FPVKIDMISRFKTAAQQKAT----IKAVKIGDVDV 733 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + + + + +SATP Sbjct: 734 LIGTHRILQKDVQFKDLGLLIIDEE--------QRFGVSHKEKIKQIRKNVDVLTLSATP 785 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S V D V T + V D L+ + + + +V Sbjct: 786 IPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGGQVYFVYNR 845 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +++ Y+ + +V H + E II D ++D+LV ++ G+D+ Sbjct: 846 VENIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQ 905 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DADK G + L Q GR R I Y K + E +R Sbjct: 906 NVNTMVIYDADKMGLSQ----LYQLRGRVGRTNR---IAYCYLS-YRKDKVLKEVAEKRL 957 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K K E G G + D+ G ++ V D+ + L+ Sbjct: 958 KVIKEFTELG---SGFKIALKDLEIRGAGNMMGSSQHG-------HMAAVGYDLYCRMLE 1007 Query: 634 QKIHELEGLMMQHAQNLEFEEA-------AQIRDQLHQLR 666 I ++G + + E I +++ ++ Sbjct: 1008 DSIKLIKGEIDKEPVETTVELKVDAYIPDNYIENEVQKIE 1047 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 294 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 125/670 (18%), Positives = 248/670 (37%), Gaps = 74/670 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + E ++ G+ T+ G + S K + L + +A N+ A Sbjct: 11 LIEPLFEIKEYTNVLENIKRGI-PTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQA 69 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +++ ++ FF ++AV + PS + + + + R++A + Sbjct: 70 RKMFEDVSFFFGKDAV--------------FFPSKEIMLHDVEAKSYDSIYERINALYRI 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + +V S A+ D L+ + ++++ +G ID ++L + Y R Sbjct: 116 VNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEG 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 + F VRG ++DIFP +D A+R+ELFD+EV+ + FD +T + V + TI P Sbjct: 176 KSQFAVRGGIVDIFPVNAD-TAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPAREL 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + P ME+I +L + K + N Q+L + D+E ++ Y +G++ Y Sbjct: 235 IYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRY 294 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 E P + DY+ ++ L+ VDE +I + ++ +E G L Sbjct: 295 IP-----YIIEKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLA 349 Query: 370 SAL--DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + T+Y + P + E+ ++V +++ Sbjct: 350 GSFDIFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKLL------------NS 397 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ L +I RV++ + TK E L E L YL E Sbjct: 398 YQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL---------EE 448 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 RD++ GE V++ +L G + P + V + + G + R ++ Sbjct: 449 PHRDIQPGE--VVITHGVLNRGFEYPGIGFVVVSGKELFGQEKKT--------RRHKSAK 498 Query: 548 GKAIL-YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 GK I + D + + + + K + I Sbjct: 499 GKKISVFTDLNVGDYVVHYVHGIGKYIGI------EQLVVENVKKDYLKIQ--------- 543 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL- 665 + G P + D + + + K+ +L G + E ++ +L L Sbjct: 544 YSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELINLY 603 Query: 666 --RELFIAAS 673 RE+ + Sbjct: 604 AQREMAEGHA 613 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 68/440 (15%), Positives = 133/440 (30%), Gaps = 43/440 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + ++ A + Q E Sbjct: 644 KRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTTVLAQQHYNTFKER 703 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + + + R + + A + V+ +H + + Sbjct: 704 MKDFPITVEVLSRFRT------QAEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLL 757 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S + D Sbjct: 758 VIDEEQRFGVT--------HKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGIRDISTIEE 809 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 + V D+++ I + + +V R +++ RV Sbjct: 810 PPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQKLVPEARV 869 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H ++ E I+ GE+D+LV ++ GLDMP V+ + + DADK G + Sbjct: 870 AIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQ--- 926 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A Y K + E +R + K E G G + Sbjct: 927 -LYQLRGRVGRSNR-LAYAYIT---YKKDKVLSEIAEKRLQAIKEFTEFG---SGFKIAM 978 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQHAQ 648 D+ G + D+V DM K L + ++EL + + Sbjct: 979 RDLQLRGAGNLLGPQQHG-------HIDSVGYDMYCKLLAEAVNELRGIPVTKEDEEISI 1031 Query: 649 NL---EFEEAAQIRDQLHQL 665 ++ + + I D+ ++ Sbjct: 1032 DVNVSAYIDNDYIGDENQKI 1051 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 294 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 113/655 (17%), Positives = 230/655 (35%), Gaps = 53/655 (8%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L G + G S K + + P +V+ + T A ++Y Sbjct: 2 ELQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYD 61 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + F + P+ D + + R++ + ++E + Sbjct: 62 DFRNFT---------------KQVWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQG 106 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID +RL + Y R Q G F Sbjct: 107 GVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDIFP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++ Sbjct: 167 IRGGIIDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKK 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 226 QLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 Query: 315 GRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + +Y P ++ +DE + + R +E G+ LP Sbjct: 286 PDTV-----SFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLP-GQT 339 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 EE A + + V T + + G V + ++ + Sbjct: 340 ELLYPVEEVMARVQRPLTVMLTGLD--QKLPGMKVNHKFSIDVKNVN------SYQNSFE 391 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE----RMEII 489 L+ ++ + RV++ + ++ A L L E+G R +E R Sbjct: 392 ILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKD 451 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 ++ +++V L G + P + V I + D G + ++ N GK Sbjct: 452 AHPKVKPGEIMVTYGSLHRGFEYPLLKFVYITEGDMFGVEKKKKRRK------KTNYQGK 505 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 AI + + + +K + K + I A Sbjct: 506 AIQSFSELSVGDYVVHEEHGLGIYKGIEKV------ERDKVIKDYIKIEYGDGGNLYLPA 559 Query: 609 KGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + D + + ++G + + A++L AA+ Sbjct: 560 TRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYAARQEK 614 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 61/413 (14%), Positives = 118/413 (28%), Gaps = 37/413 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + ++ A + + Q ++ Sbjct: 649 KTDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQR 708 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + LS + L + +V +H + + Sbjct: 709 MKDFPV------RVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLL 762 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L S + D V Sbjct: 763 IIDEE--------QRFGVAHKEKIKQLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEE 814 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 +D V + + I + A N +V +++ ++ Sbjct: 815 PPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVANRIQALVPEAVV 874 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E I+ D GE DVLV ++ GLD+P + + I DAD+ G + Sbjct: 875 TFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNANTMIIHDADRMGLSQ--- 931 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ Y + K + E +R + + E G G+ + Sbjct: 932 -LYQLRGRVGRSNR---TSYAFLM-YRRDKLLKEEAEKRLQAIREFTELG---SGIKIAM 983 Query: 594 VDILALGQNI-AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 D+ G + G + V D+ K L + + L+G Sbjct: 984 RDLEIRGAGNVLGAEQHG--------HMEAVGYDLYCKMLNEAVLALKGEKPD 1028 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 121/665 (18%), Positives = 246/665 (36%), Gaps = 66/665 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + + + GL +GL Q L G++GS ++ + + + +P ++ N Sbjct: 2 DNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ ++ + +V + P ++ + A + + RL Sbjct: 62 QAQKVTDDLTSLLEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVIN 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +VVA V+AI + P +++ + + VG I+ + RL E+ Y R+D Sbjct: 109 RLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDI+P S+ +R+ELFD EV+ + F+ + + T+ I P Sbjct: 169 SAPGEFSIRGGIIDIYPLTSE-NPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E +AME+I LAA K L + + L D E ++E + Sbjct: 228 ELIIRPEEKARAMEKIDSGLAASLKKLKADKQKE---ILHANISHDKERLSEGQTDQELV 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y + E P +L DY P + LL++DE + + + L+E G Sbjct: 285 KYLSYFY-----EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKI 339 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 L F++ A + + + + S ++V+ +++ Sbjct: 340 LHD--IRLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSG---------RQMQS 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q++ L E+ + N V+ K + L+ L ++ + Sbjct: 389 FHGQMNVLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAM----------TD 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + L G+ ++ L+ G ++P + L I + + ++ Q + A R Sbjct: 439 SKKALVQGQVYIM--EGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAERIK- 495 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 Y + I + + G++K ++I G + Sbjct: 496 ----SYSELQIGDYVVHINHGIGKYLGI------ETLEINGIHKDYLNIHYQGSDKL--- 542 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 P+ + D V + + + K+++L G + + I D L +L Sbjct: 543 ------YVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYA 596 Query: 668 LFIAA 672 A+ Sbjct: 597 EREAS 601 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 126/430 (29%), Gaps = 38/430 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + I+ A + Q + E Sbjct: 636 KKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHYETIKER 695 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G+ + R + L + +V +H + + Sbjct: 696 FQDYPINIGLLSRFRTR------KEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLL 749 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S V D V T Sbjct: 750 IIDEEQRFGVT--------HKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIET 801 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 + V L+ I + A +V E + + V Sbjct: 802 PPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDAKV 861 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + E ++ GE DVLV ++ G+D+P V+ + + DADK G + Sbjct: 862 AYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQ--- 918 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A Y K + E +R + K E G G + Sbjct: 919 -LYQLRGRVGRSNR-VAYAYFT---YRRDKVLTEVAEKRLQAIKEFTELG---SGFKIAM 970 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG---LMMQHAQNL 650 D+ G + D+V D+ + L++ I E +G Q + Sbjct: 971 RDLTIRGAGNLLGAQQHGF-------IDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEI 1023 Query: 651 EFEEAAQIRD 660 + E A I + Sbjct: 1024 DVELDAYIPE 1033 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 114/581 (19%), Positives = 205/581 (35%), Gaps = 51/581 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNKTL 69 L GLE+ Q + G++GS ++ A + P +V+ P + Sbjct: 4 LLKPLQAVPEFIGLIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTPGERE 63 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q+ E+ P AV+ F P + + ++ +E RL ++ Sbjct: 64 ACQMADEIAGLLPGAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQVLES 110 Query: 130 MLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ VV+A A + L P ++ + L L G + ++RRL + Y R Sbjct: 111 LVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERVGLVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I I Sbjct: 171 GRGQFCLRGGILDVFPM-TAHRPVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIGAARE 229 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + +K+E A+ L + + ++L ++ E GY +GIEN Sbjct: 230 LIVEDKAWENFRRALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFNGIEN 287 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + T+ DYLPA ++VD+ I + R L+ G L Sbjct: 288 FLPYFYREVI-----TILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSRGRVL 342 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 PS + L+ + S+ D V P + Sbjct: 343 PSQFLAYAGWSDIQGGLSRHPVIYSSLLPRQ---------PDFVRPQQTFSLPWKAMPSF 393 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L EIR ++ + A+ + L++HG Y S Sbjct: 394 LGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASS---------P 444 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 +R G +VLV + L G ++P+ L + + D G R + + +GR A Sbjct: 445 EGHVRSG--NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAP---- 498 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + D + +G+ Sbjct: 499 ----FVDLRVGDYVVHANHGIGQYLGVVPLTIGGHSQEKGI 535 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 289 bits (738), Expect = 3e-76, Method: Composition-based stats. Identities = 115/651 (17%), Positives = 216/651 (33%), Gaps = 64/651 (9%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + I R+ L TL G+ GS + +A ++ +RP +V+AP+ AA++ Sbjct: 2 PLVDSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEI 61 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 E++ F P+ D + S + + RL+ + +++R Sbjct: 62 CTELRFFSG------------RPFDVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDR 109 Query: 134 RDVVVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + VV + A+ P L L+ G ++ L +L L Y RGT Sbjct: 110 KTAAVVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGT 169 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F VRG ++DIFP + +R+E F + VE + FDPL+ + ++ + + P V Sbjct: 170 FAVRGGIVDIFPPGFEQ-PVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLT 228 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 E + A I + E + + LE + + Y +G+E Sbjct: 229 DEVLKSASHHI-------------KARCDELEISPVARRELLEQLQQGLYPTGVEWLLPL 275 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL--PS 370 R TLFDY D + VV + + R ++ E G P+ Sbjct: 276 FHPRL-----ETLFDY-AGDAVRVVLDPEALAEEDERFDRELVTAEDQARERGDLFASPA 329 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + T EK+ + D ++V + Sbjct: 330 EFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALD-----IQENTDLKVDVSSDSE 384 Query: 431 Q-VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + L++ + +RV+V + A+ L E L + + ER Sbjct: 385 RILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHY-PLPLNISDRPFPAERERD- 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 G+ DV++G L G +PE L+ I + + G + G + Sbjct: 443 ----DGKVDVVIGD--LSRGFRLPEEKLIVIAEEEIFGRRQK------RRGVSELRKKQI 490 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + + Y I+ G + + G + Sbjct: 491 MTSLAELKPGDYMVHLDHGIGI------YRGLQHISLSGCAGDFILLEYAGGDKLYLPVD 544 Query: 610 GRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V + + + + ++ + + + A L AA+ Sbjct: 545 RLNLVQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAAR 595 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 67/440 (15%), Positives = 132/440 (30%), Gaps = 42/440 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P V + ++ A + Q + + Sbjct: 635 DMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFKARL- 693 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 Y +E SRF + + + + + + V+ +H + Sbjct: 694 -GAYPVTVEMLSRFRTP----KEQKEILEKVKKGAIDVIIGTHRLLQSDVTFKDLGLLIV 748 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + + ++ATP L S + D + T Sbjct: 749 DEEQRFGVT--------HKEKLKKYKAVVDILTLTATPIPRTLYMSMMGIRDLSIIDTPP 800 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RY 475 +D + VA DDL+ + + ++ + + E+L Sbjct: 801 VDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVPEAKIAV 860 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H +D E +++ GE ++L+ ++ GLD+P + + I AD G + L Sbjct: 861 GHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQ----L 916 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ AI R R K + E G G D Sbjct: 917 YQLRGRVGRSKQRAYAYLLIPGEG----AISSDARERLKIIQELTELG---AGFRLATHD 969 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + G + V D+ + L++ I L+G + + +E E Sbjct: 970 LEIRGAGDILGAKQSGN-------IAAVGFDLYTELLEEAIQNLKGE--ERLERVEPEIN 1020 Query: 656 AQI-----RDQLHQLRELFI 670 +I D + + + I Sbjct: 1021 LRIPAFVPEDYVREPNQRLI 1040 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 109/657 (16%), Positives = 211/657 (32%), Gaps = 59/657 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAH---QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 +++ + E Q + G++GS +A + RP ++ + Sbjct: 4 LVDIIPYENSLQNIIEDFSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDN 63 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A LY ++ + V P + + A + + R Sbjct: 64 YRAESLYSDLVTLLDKEQVY-------------IYPEHQVYPFELAWQSRDVNNERAQVL 110 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVG-MIIDQRAILRRLAELQYARND 185 +AML ++ V + S+ + P +K +L VG + I +L L Y Sbjct: 111 QAMLSKKSAVYIFSLKSAKEKLSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTS 170 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q+G F RG +ID+FP S+ + +R+E FD+E+E + FD T + + + P Sbjct: 171 MVEQKGQFSHRGGIIDVFPVASE-LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGP 229 Query: 246 KTHYVTPRERIVQAMEEI-KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + V + E ++ L+++ + L +R DL + Sbjct: 230 GSQLVIGDNTNLSQALNQLTREFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLP 289 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Y + + T+ D+LP + L VDE + E+L+E Sbjct: 290 HFHRYLSYFYP----KNYGTIIDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEE 345 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-RPTGLLDPII 423 G LP + + TIY + + + Sbjct: 346 GKILPGESNLFYSIEDVLSGNPFDTIYS-----------ANFLRQNPFENVSQATNMSVK 394 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + Q D L E++Q N R+++ + T A L E L++ + Sbjct: 395 SMNQFYGQWDFFLKEMKQWMNNNYRIILFSPTPESARTLYENLKKEEIGATIVEKGNTKT 454 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 E V++ + L+ G + E L I D G + + + Sbjct: 455 E------------NQVVIAVGDLKSGFILQESKLAVITYGDLWGHQKKKIR--------S 494 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R + + + KY + GL K + I G + Sbjct: 495 RKRDKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDS 554 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + V + P + Q+ ++ + + A++L A + Sbjct: 555 LYVPTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAER 611 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 67/466 (14%), Positives = 133/466 (28%), Gaps = 42/466 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + E F++ D + P + + ++ Sbjct: 618 AFSQDTPWQKE-FEDYFPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMR 676 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + Q Q E + + + Sbjct: 677 AAFKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVK---- 732 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + ++ +H + + + + + + Sbjct: 733 --EEMKEGNAEIIIGTHKLLNKSVKFRDLGLLIIDEE--------QRFGVQHKEKIKMLK 782 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRA 443 + ++ATP L S V D V T V L+ + + Sbjct: 783 KNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREI 842 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V V + + + + + V H + + ++ D G++DVLV Sbjct: 843 SREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLV 902 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ GLD+ V+ + I +AD+ G + Q GR R+ A Y Sbjct: 903 STSIVEAGLDIQNVNTIIIYNADRMGLSQP----YQLRGRVGRSNR-MAYAYLT---YQK 954 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + + +R K K E G G + D+ G + Sbjct: 955 DKVLTQEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNILGPEQHG-------HIM 1004 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 V DM K L+ I E+ EE +I+D ++ + Sbjct: 1005 AVGFDMYTKMLKDAIKEISQESQ------TQEETTKIQDDKTEVEK 1044 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 282 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 120/657 (18%), Positives = 225/657 (34%), Gaps = 61/657 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + +++ L EGL+ +Q + G+ S +T +A + RP +++ P+ Sbjct: 1 MLREVAAELLALPSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA-SVNEHIEQMRLS 125 +T A ++Y +M F + V F P + + S + R++ Sbjct: 61 QTHAGRIYEDMLSVFKDEDVYLF-------------PGKELLYYSNLFSESGDAAAQRIA 107 Query: 126 ATKAMLERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A K + ++VVVA+VSA+ P + + L I +L +L + Y R Sbjct: 108 AMKRLARGDNIVVVATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERV 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + +G VRG ++DI+PA + R+E F E V+ + FDP + + + + Sbjct: 168 EMVDVQGQVSVRGGIVDIYPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELT 226 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V A+ + +E A + L + + E +L +R +E + E Y Sbjct: 227 PARELVVTAAERKNALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFP 286 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+E Y + + DY P + LL +DE + R + TL Sbjct: 287 GMEQYLLYFYDQAAKIT-----DYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFAQ 341 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + D L Q + S + R L + Sbjct: 342 GDLPARSADMVWSYKSLLANLLTQLVAFSL--------FAHSSDHHPYRRSVSLSAKPV- 392 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Q D E+ Q RV++ T +++ + + E L E Y S+ D + Sbjct: 393 -PKFLGQWDLFGEEVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLAQ 451 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG-RAA 543 R V + L G +PE+ LV + + D + +R + G R Sbjct: 452 R------------SVTLLHGSLESGFVLPEIKLVLLTEQDILPQKKKKRRIKGKEGVRVG 499 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + +Y + G + + I G + Sbjct: 500 --------------DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGNDK 545 Query: 604 AKTKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + R + + + + ++ + + A+ L AA+ Sbjct: 546 LYIPIEQIDVVRKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLALYAAR 602 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 73/440 (16%), Positives = 123/440 (27%), Gaps = 38/440 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + ++ A + Q +E Sbjct: 640 KQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQAAFLVPTTVLAQQHYHNFVER 699 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + GI LS L + +V +H + + Sbjct: 700 LEGFPVNVGI------LSRFQSPAEQKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFL 753 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G R + + ++ATP L S V D V T Sbjct: 754 VVDEEQRFGVRHKER--------IKMLKKNLDVLTMTATPIPRTLHMSLVGVRDMSVIET 805 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 D V D L+ + + +V + L+E V Sbjct: 806 PPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNRVQSINRWAAKLQELMPEVRL 865 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + +++ GE+DVL+ ++ GLD+P V+ + I DADK G + Sbjct: 866 AVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQ--- 922 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ I Y T K + E +R + K E G G + Sbjct: 923 -LYQLRGRVGRSNR---IAYAYL-TYQKDKVLTEVAEKRLQAIKEFTELG---SGFKIAM 974 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + V D+ K L+ I +G Q E Sbjct: 975 RDLEIRGAGNILGPEQHGF-------MMAVGFDLYVKLLEDAIRTYKGQEEDTRQEPRIE 1027 Query: 654 ---EAAQIRDQLHQLRELFI 670 +A + R+ + Sbjct: 1028 IQADAYLPASYISDARQKIV 1047 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 110/658 (16%), Positives = 229/658 (34%), Gaps = 59/658 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + V + +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QLY +++ + + P+ D I + R+ + Sbjct: 63 RAEQLYSDLRFYSRD---------------VYMYPAKDILFFSADVHGNAITRKRMDVLR 107 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ +VA+V A++ K ++++ +D + ++L+ L Y + D Sbjct: 108 RLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 168 EEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAG 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V ++RI + + +I+ EL + L E+ R+ + E + E G++ Sbjct: 227 EIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVD 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +Y + +L D LP D +++DE+ + G R+ +E G+ Sbjct: 287 SYVDYFYSDTV-----SLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP ++ + + + + S + EV Sbjct: 342 LPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGRDDRISYAHKTEIECH---------EVHS 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVERM 486 D L+++IR VL + + A+ + + L + YL +D R Sbjct: 393 YRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKVLTPRE 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 LR G +P + LV + + D R Sbjct: 453 IAAMA------------GRLRSGFMIPAMHLVVVSEGDVFSS---------RSSSGKRTQ 491 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + S + Y I G K + I Sbjct: 492 KKLPYSGEIIKSFSDVSVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGGKLYV 551 Query: 607 KAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A + + + P + Q+ + ++G + + A++L A + + Sbjct: 552 LASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKE 609 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 66/440 (15%), Positives = 121/440 (27%), Gaps = 42/440 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + V + I+ A + Q + E Sbjct: 643 KADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHYETFTER 702 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + R L + L + +V +H + + Sbjct: 703 MKDYPVV------IRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLL 756 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L S + D + Sbjct: 757 IIDEE--------QRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEE 808 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 +D V +L I + A +V E T +++ V Sbjct: 809 APVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKLVPNANV 868 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H +D +I+ E DVLV ++ GLD+P + + I DA+ G + Sbjct: 869 EFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQ--- 925 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + K I E +R + K + G G+ Sbjct: 926 -LYQLRGRVGRSDR----SAFAFMFYRRNKVISEVAEKRLRAIKEYTDLG---SGVKISK 977 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-- 651 D+ G +++ V D+ K L + E G + H E Sbjct: 978 ADLNIRGAGSVLGESQSGNYEV-------VGYDLYCKMLNDAVRERRGDTVFHDYETEID 1030 Query: 652 -----FEEAAQIRDQLHQLR 666 F +++ +L Sbjct: 1031 IPIDSFIPETYVKNDFIKLE 1050 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 108/658 (16%), Positives = 208/658 (31%), Gaps = 58/658 (8%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 P+ + +A + + LG+ S + + IA + + +R +VLAP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ F + + P+ K S + R+SA M Sbjct: 64 LCADLDFFLQDLKQPESALPGQGW--ILEFPAYHILPFKGISYHTETAANRISALSRMAN 121 Query: 133 -RRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +VV + A+ L + G +D+ A + +L Y +N + Sbjct: 122 SPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEP 181 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F VRG ++D++ LR+E F +EV+ + F P T + + + I P T V Sbjct: 182 GDFCVRGSIVDVYGPPYSQ-PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAV 240 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 ++R+ + ++E+ + + ++ + GIE + Sbjct: 241 VSKDRLQSVIHRVREKAVLADMP-------------VTKIREVVDSLKATQQFPGIEGFV 287 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 L G +LFDYLPAD L V + + ET Sbjct: 288 PLLYENGG----DSLFDYLPADTLCTVLDPVAASQEYEKYLEDVEENFETAQAENRLSIP 343 Query: 371 ALDNRPLKFEEFEALAPQTIYVSAT---PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + L T G E E + V T L+ + + Sbjct: 344 PAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKASKE 403 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L + + +++ +K AE L L +G + R + Sbjct: 404 RDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVGLS----------RNQ 453 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 V++G L G P SL + + + G + Sbjct: 454 NWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPK-------HRRRK------ 498 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 T + + + + + +HGI G K+ + Sbjct: 499 --------IETQRPRTELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLEY 550 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + + + + + +L G + ++ + +I +L +L Sbjct: 551 RDGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKL 608 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 63/442 (14%), Positives = 128/442 (28%), Gaps = 42/442 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P + + ++ A Q + L+ Sbjct: 652 DMENRRPMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYE 711 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G L+ + L + +V +H + + Sbjct: 712 ------GYPVKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVII 765 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + + + ++ATP L S + D V T Sbjct: 766 DEEQRFGVK--------HKETLKKIRATVDVLALTATPIPRTLHMSMVGIRDITVINTPP 817 Query: 419 LDPIIEVRPVATQVDDLL--SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVR 474 V ++ D+++ IR A +V + + + L+ RV Sbjct: 818 EQRRPITTYV-SKFDEVIAAEAIRAELARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVG 876 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 H + +++ E D+LV ++ GLD+P + + I AD G + Sbjct: 877 VAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTILINRADMFGLAQI--- 933 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 Q GR R + Y P + +RR K + + G G + Sbjct: 934 -YQLRGRVGRGDDQ---AYAYLFIPDE-SVLTRDAQRRLKVLMEHSDLG---AGFAIAMS 985 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL----MMQHAQNL 650 D+ G A+ + V +M + ++ I +L+G + N+ Sbjct: 986 DLQIRGGGTILGSAQSG-------QIAAVGYEMYLQLMETAIGQLKGEGSAPPLDPEINV 1038 Query: 651 EFEEAAQIRDQLHQLRELFIAA 672 +F A + + + +A Sbjct: 1039 DF-SAFIPEWYIPDVDQRLLAY 1059 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 279 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 265/660 (40%), Positives = 362/660 (54%), Gaps = 83/660 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMV 62 L + F P+GDQP AI + L +D L G TG+GKTF +ANVI +PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID---QRAILRRLAE 178 +R AT+A++E +VVVVASVS +YG+G P Y+ L L + A+ RL E Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTE 248 Query: 179 -LQYA-------------RNDQAFQR---GTFRV-----RGEVID---IFPAESDDIALR 213 L Y +D R G + RG + ++P +D L+ Sbjct: 249 GLLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPY-EDSPLQ 307 Query: 214 VELF--DEEVERLSLFDPLTGQIVSTI------------------PRFTIYPKTHYVTPR 253 +L V L T + + R T++P+ H++TP Sbjct: 308 FDLDKEGRLVGFLRTPQ-GTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITPP 366 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 ER+ A I EL R L N +E +RL QRT D+ ++NELG+C G E+YSR L Sbjct: 367 ERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRHL 426 Query: 314 SGRGPGEPPPTLFDYLP-------------------------ADGLLVVDESHVTIPQIG 348 GR GEPP TL DYL LLV DESHV +PQ+ Sbjct: 427 GGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQLR 486 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSATPGN E E + Sbjct: 487 AMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSRM 546 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV LTK EDL YL E Sbjct: 547 VDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLNE 606 Query: 469 HG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA G Sbjct: 607 IGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVPG 666 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGITP 586 F+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRREKQ+ +NE +GI P Sbjct: 667 FMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIVP 726 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 115/666 (17%), Positives = 239/666 (35%), Gaps = 75/666 (11%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQT--LLGVTGSGKTFTIANVIADLQRP 59 + L + I + + + + ++T + G+ + K I + L Sbjct: 3 NTKTTLTKPL-------KKIEGMNKFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTC 55 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 V+A ++ A + ++ F V Y PS D + I Sbjct: 56 PFVIASSEEEAEVVKEDLAFLFGSENV-------------IYYPSRDILFYNADVHSNEI 102 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAE 178 + R+ A A+++ + ++V ++ A+ P +++ + + +G +D +++ +L E Sbjct: 103 VKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQIVIKIGDTVDLQSMSYQLIE 162 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R + G F +RG ++DIF + + +R+EL+D E++ + F P+T + + I Sbjct: 163 NGYERVGRVEVVGQFAIRGGIMDIFSPAN-NTPIRMELWDTEIDSIRRFSPITQRTIDNI 221 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 R IYP + PRE++++A+ I++EL A VL E+ R+ + T D+E + Sbjct: 222 ERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGAKSAANRIKENTNEDIESIV 281 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 Y+ F +LFDYL + + + ++ ++ Sbjct: 282 NGLNIETQVLYAPFCDMETA-----SLFDYLEYKKTIFITDIKKCKDKLLRVFLEYEESV 336 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 ++ +EYG LPS + EE A + Y+ P + + + + Sbjct: 337 KSRLEYGHMLPS-MVKFIFNREEIIAKVFEKNYIGFMPFLASDDMATT--KNILEIRLNE 393 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 ++ + + Q +++Q A + + TK A + E LEE Sbjct: 394 INSNYKGLKIFEQ------DLKQYKAEGKATVFLAGTKSKAAHVAEILEEQKIYTAL--G 445 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ + + +L+ L G ++ V + D + G R Sbjct: 446 DLTYDIQ----------KGQILIASGSLSHGFIYEDLEFVILSDRELFGKDRKVS----- 490 Query: 539 IGRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + G I + + +K E G+ + Sbjct: 491 ---TKKKYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKIVTE------GVAR------ 535 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + K +G I + D V + + K++ L + A++ Sbjct: 536 ----DNLKINYEGGTLYVNINQMDLVQKYVGSEGAAPKLNMLGNPEWKKAKSKARNSVKN 591 Query: 658 IRDQLH 663 I +L Sbjct: 592 IAKELI 597 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 126/440 (28%), Gaps = 43/440 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A + Q + L+ Sbjct: 641 KTDMESDKIMDRLILGDVGYGKTEVAIRAAFKAILNHKQVAYLVPTTVLAQQHFERFLKR 700 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G+ SRF + + E + + + +V +H + + Sbjct: 701 MESQAISVGV--LSRFRTPKQIKET----LKGIESGMIDIVIGTHRLLSKDVLFKDLGLL 754 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L+ S + D V Sbjct: 755 IIDEE--------QRFGVAHKEKLKQMRTEVDALTLTATPIPRTLQMSLIGIRDMSVIEE 806 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 + V + DD + I + +V + + + L V Sbjct: 807 APSERRAVQTYVLEESDDFIKDAINREINREGQVYFLSXRVQNIVEKAAQLSNMVPXAKV 866 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E I+ E +VLV ++ GLD+ + + I+DADK G + Sbjct: 867 ALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANANTIIIVDADKMGLSQ--- 923 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ K + E +R K + G G + Sbjct: 924 -LYQLRGRVGRSDKQAYAYLLYKRDX----ILSEVAEKRLNAIKQFTQLG---AGFKIAM 975 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--------LMMQ 645 D+ G ++ + ++ K L++ I +G Sbjct: 976 RDLEIRGAGDLLGASQSG-------HMAKIGYELYSKMLREAILIEQGGGIEEEKIETTI 1028 Query: 646 HAQNLEFEEAAQIRDQLHQL 665 + F + I+D++ +L Sbjct: 1029 EIKINAFISSNYIKDEIQKL 1048 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 272 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 119/660 (18%), Positives = 226/660 (34%), Gaps = 67/660 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 AF + + E ++ G + K+ I ++ +++ + Sbjct: 2 KAFTEPLLSLAGFEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQ 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY E F E Y PS D + + R+ A K Sbjct: 61 KAKELYDEYSFFDKE---------------VVYYPSKDVLFYQSDIRGNLLTAERIRALK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A+ E+ V +V + A+ P + + +L L G ++D + I L + Y + Q Sbjct: 106 AIREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG ++D+FP +++ +R+EL+ +E++ + FD + + + I R +IYP Sbjct: 166 QTMGQFSVRGGILDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAA 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V E ++++K E L + K E R+T E EL +G++ Sbjct: 225 ELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + + G + DY P+D L+ DE Q + + G+ Sbjct: 285 AFLSYFFDERVG-----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LP ++ + E L + A N G+ + Sbjct: 340 ILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANGLHQLG-------SYGIHCQSV--S 390 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + L+ ++++ RV++ + ++ A+ L+E + + G Y Sbjct: 391 PYNNSFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYT---------E 441 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +L G ++V +R G + P + I ++D G + ++ R Sbjct: 442 NYDHELFEG--QIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRH-------RTY 492 Query: 547 NGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G+ I + D Y + K + I G Sbjct: 493 EGEKIQSFTDLSVGDYVV------HENHGLGIYRGIEKLEVDKKVKDYIKIEYQG----- 541 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G + D + A + K+++L G +N QI L +L Sbjct: 542 ----GSNLYILATQLDMIQKYAGKDARKPKLNKLGGQEWTRTKNRVRGAVKQIAGDLVKL 597 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/408 (16%), Positives = 121/408 (29%), Gaps = 35/408 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A + Q + Sbjct: 639 KTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLAPTTILAQQIYDTFSQR 698 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + + R + L + ++ +H + + Sbjct: 699 MKDFPVNVDLMCRFRS------AAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGLL 752 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + + ++ATP L S + D V Sbjct: 753 VIDEEQRFGVT--------HKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEE 804 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 +D + V D+L+ I + A N +V R D+T L+E V Sbjct: 805 PPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPDATV 864 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + E I+ GE DVLV ++ GLD+ V+ + I DAD G + Sbjct: 865 AFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ--- 921 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A + K + E +R K + G G + Sbjct: 922 -LYQLRGRVGRSNR-TAYAFLM---YRRNKMLKEVAEKRLAAIKEYSDLG---SGFKIAM 973 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 D+ G + + V D+ K L + + E +G Sbjct: 974 RDLEIRGAGNLLGAEQSG-------HMEAVGYDLYCKMLSEAVKEAKG 1014 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 119/663 (17%), Positives = 235/663 (35%), Gaps = 66/663 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +Q ++L + + G Q + G++GS +T +A ++ Q+P + + + + Sbjct: 10 LTNFIEQSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQV 68 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ P + V F P + + A+ + + R+ A A+ Sbjct: 69 EELADDLANLLPPDRVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALDAL 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 +R VVV SV+ + P+ + + L + VG +D ++L+ + Y + Sbjct: 116 DSQRPAVVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLR 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +ID++ +D +R++LFD EV+ L FD T + V I P T Sbjct: 176 PGDFAIRGSIIDVYALNTD-NPVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDL 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + P + +K++ + K L++ Q++ R L + E + + + Sbjct: 235 ILPPAEFSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEF 293 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 G +L DYL ADG L +D+ + G + D+ E V+Y + Sbjct: 294 -----GDLVYPTRHSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKYHQLVS 348 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + Q G L S V + + Sbjct: 349 VPSLSNEFAKLVKADQHAQLFGALFKKGAGNLRFSQL-----VEITSRPMQR------FF 397 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ L +E+++ + +++ + + L + G V +D V ++ Sbjct: 398 GQMPLLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPVIETAADQLQVNTVQ-- 455 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 LV L G +MP LV I + + ++ R Q + A R Sbjct: 456 ----------LVA-ASLNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAERIK--- 501 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + ++ + G+++ + I Sbjct: 502 --SYTDLKPGDYVVHVNHGIGI------FSGIKTMEVDGVHQDYMIINYRNNAQI----- 548 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + + V +S ++ +I+ L G + + I D+L L Sbjct: 549 ----FVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKR 604 Query: 670 IAA 672 AA Sbjct: 605 EAA 607 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 72/446 (16%), Positives = 134/446 (30%), Gaps = 40/446 (8%) Query: 233 QIVSTIPRFTI--YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + + R P + + ++ A + Q Sbjct: 636 RSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQQHF 695 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G+ I SRF + + E L A + +V +H + + Sbjct: 696 DTLSKRFA--GFPVKIALMSRFKTNQELKETDAGL----AAGSIDIVVGTHRILSKDVQF 749 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + L + ++ATP L S V D Sbjct: 750 RDLGLVIVDEEQRFGVKHKERLKEL--------KNNVDVLTLTATPIPRTLNMSMLGVRD 801 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T V Q + + I + +V E+ L+ Sbjct: 802 LSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGGQVYYLHNRVSDIEETVMKLQAL 861 Query: 470 GERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R Y+H + E ++ D G +DVLV +++ G+D+P V+ + + +AD G Sbjct: 862 VPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLG 921 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + + K + E +R + E G Sbjct: 922 LAQ----LYQIRGRIGRSNRVAYAYFMYQPN----KVLTELGEKRLAAIRDFTELG---S 970 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G K + D+V D+ L + + +G Sbjct: 971 GFKIAMRDLAIRGAGNILGKQQHGF-------IDSVGYDLYSSMLNEAVARKQGKKRAAR 1023 Query: 648 QNLEFE---EAAQIRDQLHQLRELFI 670 + E E EA ++ R+ Sbjct: 1024 ADAEVELGVEAYLPDSYVNDQRQKIE 1049 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 108/662 (16%), Positives = 202/662 (30%), Gaps = 70/662 (10%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L + LE G GV F ++ + L P +V+ + A + Sbjct: 5 QEKKILPVLVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTE 64 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-R 134 + + F P +A A PS + + + R+ M E Sbjct: 65 DARFFQPADA----------RAEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLA 114 Query: 135 DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+V +V A+ P + ++ G +D A+ +L Y R + G F Sbjct: 115 PAVLVLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG ++D+F + R++LF + VE + F P+T + T+ P V + Sbjct: 175 SIRGGIVDLFSPFHE-APARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAK 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +RI + + + E ++ ++ M + G+E+ + Sbjct: 234 DRIGRLIAA-------------VKKRSAELNLPVSVSRDIIDRMEQGTDTEGMESLMPLV 280 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P TLFDYLP LLV+ + + + R ET E G Sbjct: 281 Y-----ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEGRWCVPPDA 335 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + + + VV G+ D + TQ Sbjct: 336 LYLDWQAVQKEAFKKPLLSFPVLP--VSATPEDGDNTPVVETAGVTDNSAVTLMLRTQPR 393 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D LLS I + + ++ + + + +L H L Sbjct: 394 DTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVPHESL---------- 443 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + L G L I D + G +R + Sbjct: 444 DAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVR------HRSSAGKKGA 497 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + + R E +K T +G+ + + + Sbjct: 498 RDVYLDLETLKQGDLVVHVDHGIGRYEGIRKV------TVEGIANDFLLLSYRDGDRLYL 551 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +R V D+ A + ++ + +EA +I +L L Sbjct: 552 SVDRMDMARKYVGADD--------AEAPLLDKMGAKTWGRVKAKARKEAEKIAKELLDLY 603 Query: 667 EL 668 Sbjct: 604 AR 605 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 59/441 (13%), Positives = 126/441 (28%), Gaps = 46/441 (10%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P V + ++ + Q Sbjct: 646 DMASSTPMDRLVCGDVGYGKTEVAMRSSFMCVCDGFQVAVLVPTTVLAEQHFATFSRRFA 705 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDY---LPADGLLVVDESHVTIPQIGGMYRGDR 355 Y ++ + P L + +V +H + + + Sbjct: 706 G---------YPFNIACLSRFKTPARQKQIVADLKEGRVDIVIGTHRLLSKDVAFKQLGL 756 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + +G + + + + ++ATP L S + D V Sbjct: 757 VILDEEQRFGVK--------HKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMRDISVIT 808 Query: 416 TGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 T ++ D ++ IR+ ++ + ++L++ VR Sbjct: 809 TPPEHRKAIKTYISEFDDAIIRTAIRKELERGGQIYFVHNNIHKIAFIADHLKKLVPEVR 868 Query: 475 --YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H +D + E D+LV ++ G+D+P + + I AD G + Sbjct: 869 LGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPSANTIFINRADMFGLAQI- 927 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 Q GR R+ Y P A+G+ R+R K + + G G Sbjct: 928 ---YQLRGRVGRSDEQ---AYAYLFIPRE-SALGKDARKRLKVLMEHSDLG---SGFQIA 977 Query: 593 VVDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM--MQHAQN 649 + D+ G G V DM + ++Q + EL+G Sbjct: 978 MNDLKIRGGGAALGVSQSG--------HITAVGYDMFLQLMEQAVAELKGEPVTETLNPE 1029 Query: 650 LEFEEAAQIRD-QLHQLRELF 669 + ++ + + + + + Sbjct: 1030 INIPVSSFLSEAYISDIDQRM 1050 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 106/675 (15%), Positives = 226/675 (33%), Gaps = 83/675 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + S ++ + + L E G + + G++G+ K IA + ++ +V+ N Sbjct: 1 MKSIITEYINEDKRYQELNEVF--GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A +L ++ +F ++ + + P D E+ ++ + R+ Sbjct: 59 LYQADKLESDLLQFVEDSEIYKY-------------PMQDIMTEEFSTQSPQFMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + + ++ + P D++ L L VG ID L +L + Y R Sbjct: 106 LTALAQEERGLFIVPLNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG ++DI+P +R+E FD EV+ + FD + + I I Sbjct: 166 VVSHIGEFSLRGGIVDIYPLIGK--PVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLL-----ENNKLLEEQRLTQRTQFDLEMMNEL 300 + Y+ + + ++K+ R + E + E +L + FD +++ L Sbjct: 224 ASDYIITEDVLKHTKHKLKQAYEDTRPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRL 283 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + P T+ DY D ++ VDE + + + Sbjct: 284 VAFMYEQ--------------PATIMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQN 329 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G + FE T + T + + + + Sbjct: 330 LIESGKGFIDQSFLQYEGFENLLKPFAVTYFTLFTATMPVQ------LNEIIKFSCKPVQ 383 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 Q D + SE ++ + ++V T+ E + L E Sbjct: 384 QFY------GQYDIMRSEFQRFIQNDYTIVVLAETETKKERIQSMLNEMHIPTFI----- 432 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + G + + L EG ++P + LV + + + + ++ Sbjct: 433 ------DTPSRRNEGGSAI-ITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTL 485 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 K Y D + R + G++K + + G Sbjct: 486 ----TNAEKIKSYQDLKVGDYVVHVHHGVGRYLG------VETLEVGGVHKDYIKLQYKG 535 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P+ + D V ++ + K+++L G + + + + D Sbjct: 536 TDQL---------FVPVDQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMAD 586 Query: 661 QLHQL---RELFIAA 672 +L +L RE+ + Sbjct: 587 ELIELYKAREMSVGY 601 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 42/478 (8%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAM 260 E D E++ P + + I P + + Sbjct: 597 MSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTE 656 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ A + + Q + +E M + + ++ SRF + + E Sbjct: 657 VAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQD--FPIEVQLISRFRTTKEVKE 714 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + L + + +V +H + + + +G R Sbjct: 715 T----KEGLKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKER--------I 762 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEI 439 + + ++ATP L S V D V T + V Q + + + Sbjct: 763 KSLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEAL 822 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V + + E L+ H ++ + E + E+ Sbjct: 823 ERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEY 882 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 D++V ++ G+D+P + + I DAD+ G + L Q GR R+ + Sbjct: 883 DIIVTTTIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPT 938 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 K + ET R + K E G G + D+ G K + Sbjct: 939 N----KVLSETAEDRLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF----- 986 Query: 618 VEPDNVPMDMSPKALQQKIHELE--GLMMQHAQNLEFEE---AAQIRDQLHQLRELFI 670 D+V D+ + L++ ++E Q A +E E A + + + Sbjct: 987 --IDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPEIEIELNIDAYLPAEYIPNEQSKIE 1042 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 94/657 (14%), Positives = 225/657 (34%), Gaps = 69/657 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 +N F + + + +++ + G+ K ++ DL R + + + Sbjct: 1 MNDVFLYPLQNSKEYKDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSS 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++Y ++ + + Y+ D + + + + E +L Sbjct: 61 DLEAKKVYEDLSFYMEDK--------------VEYLGFQDIYFYHLDAKDRNEEAKKLKV 106 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + +++V S+ A+ + L + H VG +D + +L L Y R Sbjct: 107 LLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVS 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F +RG +ID+F E +R+ELFD+E++ + FD + + + + +F+I P Sbjct: 167 KIEGFGQFSIRGGIIDVFSLEY-TNPIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ P + L K + + T +++ ++ Y G Sbjct: 226 SREFIYPEKTTDA----------------LVKLKKETTKNTDEGTFQNIDYISSKTYFEG 269 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENY ++ E ++F YL D ++ +++ + R + +E G Sbjct: 270 AENYIDYIYP----EENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERG 325 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + +++ +++ S +++ R Sbjct: 326 LAIKNQGKLLYHYTDLEYLVKDKSVVLNSLLPKSINNFSIKSIINFESREVPT------- 378 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD L+ E+ + ++++ T T A L + L + G + +R Sbjct: 379 --FNGKVDLLVEELNRLKYNGYKIILATNTLERANKLGKDLLDKGLETTI------SKDR 430 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ V++ + G + V I D + G + RA++ Sbjct: 431 DIEIKS-----SQVIIVPAHINSGFQYKSIKFVVITDNEMIGVYK----------RASKT 475 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 N K + +Y IT + K + I+ G + Sbjct: 476 SNKKVKKGKKIESFLDLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGDNLY 535 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 K + + + + ++ + +++ + ++L A + + Sbjct: 536 VPIDQMDKVQKYIGAEVEKVKLNKLGTNEWTKAKAKVKKEIEDMTKDLIELYAKREK 592 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 122/654 (18%), Positives = 228/654 (34%), Gaps = 61/654 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + A++ GL Q +LGV G + A + D P +++ P + A Sbjct: 4 LTEFLRETPALKTAVSGLAR-YKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGEREA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A L ++ P + F + + + + + I R+ +A+ Sbjct: 62 AALADDLVTLLPGRGIFVFS-------------AWELLPVQVLAYSREIGVRRMRVLEAL 108 Query: 131 LERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + + VV+A V A+ L P + + + L G A+ RL + Y Q Sbjct: 109 ITGTNPVVIAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDT 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG + D+FP + +RVE F +E+ L FDP T + + R T+ P T Sbjct: 169 AGQFSIRGGIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATEL 227 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V + +E + E + L + +RL + + L ++ + GIE+ Sbjct: 228 VVEDDAWEAGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDL 287 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + TL DYL G++ V E + L+E G LP Sbjct: 288 LAYFYPQAA-----TLMDYLGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLLP 342 Query: 370 SALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + F ALAP +T+Y+S +S ++ +V G L Sbjct: 343 GQFRLYLDREQLFAALAPFRTVYLSLFGRVGAFSRSDREIRFEVRELPGNLGRT------ 396 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +L EIR+R +RV++ T A L L + G + ++ V+ Sbjct: 397 ----GAVLGEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAAFQAY-ELGQVQ---- 447 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 V VG+ L +G ++ E L + + + G + Sbjct: 448 -------PGQVAVGVGRLNKGFEIAESQLAVLTEREIYGKQLQD------------RREP 488 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + ++A +Y+ + + ++ + I LG++ Sbjct: 489 YRLRRRTLDELNLA-PGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLINYLGEDKLYVPT 547 Query: 609 KGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 G + + + + + + + + AQ L AA+ Sbjct: 548 DQLGLVQKYIGAEGETPRCSRLGGSEWARSKKRVREAVREMAQELLKLYAARQS 601 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 66/438 (15%), Positives = 125/438 (28%), Gaps = 38/438 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q Q E Sbjct: 637 KKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHLQTFRER 696 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 +G LS + L A + +V +H + Sbjct: 697 ------FNGYPVVIEMLSRFRSVREQKQVLADLAAGKVDIVIGTHRLVQDDVQFADLGLI 750 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + I ++ATP L S + D + T Sbjct: 751 VVDEE--------QRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLLET 802 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 LD V + L+ + + A +V + + +L+E Sbjct: 803 PPLDRFPVQTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFELDRVAGWLQELVPEARI 862 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + +++ D G +DVLV ++ GLD+ V+ + + +AD+ G + Sbjct: 863 AVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEADQLGLAQ--- 919 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A Y + +GE +R + + + G G Sbjct: 920 -LYQLRGRVGRSNR-LAYAYFTF---RRDRLLGEAAEKRLRAIRDFTDFG---SGFRLAK 971 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + S V +M + L++ + EL+G E Sbjct: 972 RDLEIRGAGNLLGTEQHGNISV-------VGFEMYCRLLEESVRELKGEAPPEEFETVVE 1024 Query: 654 ---EAAQIRDQLHQLREL 668 A D + + Sbjct: 1025 VPVTAFLPDDYIPDPEQK 1042 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 106/656 (16%), Positives = 221/656 (33%), Gaps = 69/656 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + Q + + L G Q + G+ GS +T IA+++ + QR + + A Sbjct: 3 LEAFMTQTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +Q + ++ P + + A+ + R+ A +A+ Sbjct: 62 SQ-------------LVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRAL 108 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVVV S+S + P + ++VG D A+ ++L + YA Sbjct: 109 QSDRPVVVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAA 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG +IDI+P +D +R++ FD EV+ L FDP T + + + P T + Sbjct: 169 PGDFAVRGSIIDIYPLAAD-YPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDF 227 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + L + + + LT + Q ++ + + + + Sbjct: 228 ILTADERATGATA----LRTTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDPQLLEF 283 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + DYLP DG+++ + + + + + Sbjct: 284 -----ADYLFPEHHQVLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFT 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L+ Q + G L + + ++ Sbjct: 339 QQTFGGELRPIVRADKHAQIMLALFQKGMGSLRF--QAMTNM---------TTRAMQQFF 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ + +EI + + V++ + + + L++ + S +++ Sbjct: 388 GQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLTKSANLQPALTQLV 447 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + L+ G ++PE SLV I +A+ + +R QT+ A R Sbjct: 448 PE-------------RLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAERLK--- 491 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + + Q +T G+++ + I Sbjct: 492 --SYTDLKPGDYVVHVNHGIGKFIGMQ------TLTVDGVHQDYMTI---------DYQD 534 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + +S + + KI++L G ++ + I D+L L Sbjct: 535 NAQLFIPVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDL 590 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/467 (16%), Positives = 143/467 (30%), Gaps = 46/467 (9%) Query: 218 DEEVERLSLFD------PLTGQIVSTIPRFTI--YPKTHYVTPRERIVQAMEEIKEELAA 269 D+ ++ D P + + + P + + ++ A Sbjct: 605 DDSLQHDFENDFPYAETPDQLRTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKA 664 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + Q + GY +E +SRF + + + L Sbjct: 665 VEAGKQVAFLVPTTILAQQHYDTMVSRFE--GYPINVEMFSRFRTTKQIHQA----IKDL 718 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L +V +H + Q + +G + + Sbjct: 719 ETGQLDIVVGTHRLLSQDVKFKNLGLVLVDEEQRFGVKHKER--------LKQLKANVDV 770 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINER 448 + ++ATP L S V D V T + V Q + + IR+ + Sbjct: 771 LTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQ 830 Query: 449 VLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 V E ++ RV Y+H + + ++ D G++DVLV ++ Sbjct: 831 VFYLHNRVDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTII 890 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + + +AD+ G + L Q GR R+ A Y K + Sbjct: 891 ETGIDIPNANTLFVENADRMGLSQ----LYQLRGRIGRSNR-VAYAYFT---YQPNKVLT 942 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 E +R + K E G G + D+ G K + ++V D Sbjct: 943 EVSEKRLEAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF-------INSVGYD 992 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFI 670 + + L + + G Q + E EA D + ++ Sbjct: 993 LYTQMLSDAVAKKRGQKTQPKTDTTIELGVEAYLPSDYIEDEQQKIE 1039 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 103/662 (15%), Positives = 212/662 (32%), Gaps = 70/662 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + L LE G + G++GS KT ++ ++ +++ N+ A Sbjct: 3 LIDMVQADPELSALWPKLETG--RHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ + V F P D + A + R++A + Sbjct: 61 DELAADLSSLLGDALVYDF-------------PVEDVLAAEVAVSSPETRNDRINALTFI 107 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + ++V S++ + P + L + + +D + + ++L + Y R+ Sbjct: 108 QSGQPGIIVTSLAGYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSA 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI+P DD +R+ELFD E++ + FD T + + + + I P T Sbjct: 168 PGQFAIRGGIIDIYPLNQDD-PIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDM 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + A I + + K+ + T L +L EN Sbjct: 227 IASDQVLTDAGARIGK------QATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENL 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + L + DYL D L+ D+ + + + L E G LP Sbjct: 281 A--LYAPELYPEHHRITDYLAGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLP 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + + + + + P V+ Sbjct: 339 KTPNP---TIQALNQRDRHPRLYLSLFQKGMGQLRLDSLTNV---------PSRNVQQFF 386 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +Q+ L +E + + V+ K + L+ L + Sbjct: 387 SQMPLLKTETDRWVKQKQTVVFLVSDKNRLDKLSATLHDFEISNVV-----------TEP 435 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 L G+ + L+ G ++P++ LV + + + + R+ QT+ R Sbjct: 436 NQLLSGKVQ--LTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARHQTLANTER----- 488 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + + K +Y + G+++ + I+ + Sbjct: 489 ------LRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIPVD 542 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + V D +++L G Q + I D+L L Sbjct: 543 QLNLVQKYVSADGKT---------PNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKR 593 Query: 670 IA 671 A Sbjct: 594 EA 595 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/441 (16%), Positives = 127/441 (28%), Gaps = 40/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q + Sbjct: 631 KRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHFDTMKDR 690 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G+ SRF + L + +V +H + + Sbjct: 691 FADFPVKIGL--LSRFQTPHQNKMT----IKGLKNGTIDIVVGTHRLLSKDVAFRDLGLL 744 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S V D V T Sbjct: 745 VIDEEQRFGVKHKER--------IKQLKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIET 796 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 + V Q ++ I + +V E LEE Sbjct: 797 PPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASI 856 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + + +I D G +DVLV ++ G+DMP + + I +AD G + Sbjct: 857 GYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQ--- 913 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A Y K + E +R + K E G G + Sbjct: 914 -LYQLRGRIGRSSR-VAYAYFM---YQPMKVLNEVAEKRLQAIKDFTELG---SGFKIAM 965 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQN 649 D+ G K + D+V D+ + LQ+ +++ G + Sbjct: 966 RDLSIRGAGNLLGKQQHGF-------IDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEID 1018 Query: 650 LEFEEAAQIRDQLHQLRELFI 670 L E A D + R+ Sbjct: 1019 LGLE-AYLPTDYVADSRQKIE 1038 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 112/660 (16%), Positives = 219/660 (33%), Gaps = 62/660 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF + E +R L L DG A +LG K I + A +V+ ++ Sbjct: 7 AFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKR 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A QL E++ F Y P+ D + + + + R+ A +A Sbjct: 66 ARQLAEELEFFTEN---------------VFYYPAKDLLFYQSDIRSNVLTRQRMQAVEA 110 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 111 LRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV---STIPRFTIYP 245 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + + + I P Sbjct: 171 HPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVP 229 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V E + + +E I+ + E+ K E R+ +E + Sbjct: 230 SAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQ 289 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E++ + + + +L DY+P DG++ +D + + +E G Sbjct: 290 VESHLTYFTDQTL-----SLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEEG 344 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + L + + + + I + Sbjct: 345 YILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGL---------EVREHFHIRIRQG 395 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + LL ++R+ +++ ++ A L + L + V Y Sbjct: 396 SVYNNSYELLLKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFYT--------- 446 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + +++ E ++V L G ++ + V + + D G R R R+ Sbjct: 447 EDPEHEVKEAE--IMVTRGSLSAGYELTDAGFVLLTEEDLFGGRRKRRKRG------RRH 498 Query: 546 VNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+AI + Y I + K + I I Sbjct: 499 REGEAIASFAQLHEGDYV------IHENHGLGIYRGMEKIEVDQVTKDYIKIEYADSGIL 552 Query: 605 KTKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A + D + + + ++ + A+ L A + D+ Sbjct: 553 YILASQMDLLQKYAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQEDK 612 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 133/441 (30%), Gaps = 40/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + ++ A ++ + Q ++ Sbjct: 646 KKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGKQVVYLVPTTILAQQHYDTFVQR 705 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G+ R + + L + + +V +H + + Sbjct: 706 MAPYPIKVGLLCRFRNKTQQAQTVS------ELASGRVDIVIGTHRALSRDVVFRDLGLL 759 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + R + + + +SATP L S + D + Sbjct: 760 IIDEE--------QRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILDE 811 Query: 417 GLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 ++ I+ + + + + A ++ D+T L++ V Sbjct: 812 APMERTPIQTFVFEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQKLLPEAHV 871 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + I+ D GE D+LV ++ GLD+ V+ + I DAD G + Sbjct: 872 AYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADNMGLSQ--- 928 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A + K + E +R K + G G + Sbjct: 929 -LYQLRGRVGRSNR-TAYAFFM---YRRGKLLKEVAEKRLLAIKEFSDLG---SGFKIAM 980 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM----QHAQN 649 D+ G +++ ++V D+ K L + + + +G + + + + Sbjct: 981 RDLEIRGAGNVLGESQSG-------HMESVGYDLYCKMLGEAVRQEKGEEIYEPFETSVD 1033 Query: 650 LEFEEAAQIRDQLHQLRELFI 670 L+ + A + + Sbjct: 1034 LDMD-AYLPESYVADAGQRME 1053 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 103/668 (15%), Positives = 219/668 (32%), Gaps = 81/668 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + + + L++ G + + G++ S K IA Q+ +++ N Sbjct: 1 MRQVISNYVKEDKRFQELDQVF--GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++ ++ ++ + + P D E+ ++ + + R+ Sbjct: 59 LYQADKIEADILQYVSGEEIYKY-------------PVQDIMTEEFSTQSPQLMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + ++ + P +++ + L VG ID L +L + Y R Sbjct: 106 LTALAHGEKGLFIVPLNGLKKWLTPVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG +IDI+P +R+ELFD E++ + FD T + + I Sbjct: 166 VVSHIGEFSLRGGIIDIYPLIGS--PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL-----LEEQRLTQRTQFDLEMMNEL 300 + Y+ E I ++K R + ++ + E +L + T FD +++ L Sbjct: 224 ASDYIITDEVISHLQTQLKAAYEDTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRL 283 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + P T+ DY D ++ VDE + + Sbjct: 284 VAFMYDQ--------------PSTIIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISN 329 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G + FE P + T + + + Sbjct: 330 LIESGNGFIGQSFMQYDGFETLLDERPVAYFTLFTSSMPVE------LDHIIKFSCKPVQ 383 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 Q D + SE ++ + ++V T+ E + L E V Sbjct: 384 QFY------GQYDIMRSEFQRFIHNDYAIVVLVETETKVERIQSMLNEMHIPVV------ 431 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 I + G+ +V L EG ++P + LV I + + + ++ Sbjct: 432 -----THIDQASTSGQA--VVVEGSLSEGFELPYMQLVVITERELFKTKQKKQRKRTKTM 484 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + K Y D + R + ++ + + G Sbjct: 485 ----SNAEKIKSYQDLNVGDYVVHVHHGVGRYLG------VETLEVGEQHRDYIKLQYKG 534 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P+ + D V ++ + ++++L G + + + I D Sbjct: 535 TDQL---------FVPVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIAD 585 Query: 661 QLHQLREL 668 +L L + Sbjct: 586 ELIDLYKQ 593 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/461 (15%), Positives = 146/461 (31%), Gaps = 42/461 (9%) Query: 220 EVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E++ P + + I P + + ++ A + Sbjct: 613 ELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVA 672 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + Q + +E M + + I+ SRF S + E + L + + +V Sbjct: 673 FLVPTTILAQQHYETLIERMQD--FPVEIQLISRFRSTKEVKET----KEGLKSGYVDIV 726 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + +G R + + ++ATP Sbjct: 727 VGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKER--------IKTLKNNVDVLTLTATPI 778 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTK 456 L S V D V T + V Q + + + + + + +V Sbjct: 779 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKV 838 Query: 457 RMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + E L+ H + + E + E+D+LV ++ G+D+P Sbjct: 839 QSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPN 898 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + + I +AD+ G + L Q GR R+ + K + ET R + Sbjct: 899 ANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPAN----KVLNETAEERLQ 950 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 K E G G + D+ G K + D+V D+ + L++ Sbjct: 951 AIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSVGFDLYSQMLEE 1000 Query: 635 KIHELEGLMMQH--AQNLEFEE---AAQIRDQLHQLRELFI 670 ++E G+ + ++E E A + + + Sbjct: 1001 AVNEKRGIKEETPDVPDVEVELNLDAYLPAEYIQNEQAKIE 1041 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 100/644 (15%), Positives = 212/644 (32%), Gaps = 57/644 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I +++ + Q + +TGS K A +I +P +++ ++ LA + +++ + Sbjct: 33 IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P V Y PSS+ + + R+ + + VV Sbjct: 92 LPGEDVL-------------YFPSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVV 138 Query: 141 SVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ + + +L L G D + + ++L+ Y R D +G F +RG + Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI P + + LRVE FD+EV+ + +FD T + T+ I P V E + + Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E++ + + L + + +++ ++ Q E + I Y L Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLEEPL-- 314 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 F L D +++DE Q+ + + G S D Sbjct: 315 ---EPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYE 371 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + + +T + P+ + L+ EI Sbjct: 372 QFLRYGEKHPFVLISTLPREIPGVA------PKRIFNLNARPL---TGFMGKTGILVDEI 422 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V + + AE + + L + G ++ E+ ++ G V Sbjct: 423 EHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALA----------KKHELHEPVQEG--GV 470 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 V + L +G ++P L+ + +A+ R + A G+ + + D Sbjct: 471 YVYSSSLDQGFELPLSKLIVLSEAEIYKRERKAAV----KRKKAPEKTGQRLQFADLKPG 526 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + ++ I G+ K + GQ+ + + Sbjct: 527 DFVVHVHHGIGQFMGIER------IAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 620 PDN----VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 D + ++ + + + + A +L A + Sbjct: 581 SDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREA 624 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/420 (16%), Positives = 121/420 (28%), Gaps = 35/420 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q E Sbjct: 660 KQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQER 719 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G + LS + + L + +V +H + Sbjct: 720 ------FMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLL 773 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP L S V D + T Sbjct: 774 IVDEE--------QRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDLSIIET 825 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 D VA + D + IR+ +V E + +L + RY Sbjct: 826 PPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARY 885 Query: 476 --LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E + + E DVLV ++ GLDMP V+ + I +AD+ G + Sbjct: 886 GIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQ--- 942 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ +A Y K + E +R + E G GL + Sbjct: 943 -LYQLRGRVGRSNR-RAYSYFL---YKPQKVLTEVAEKRLAAIREFTEFG---SGLKIAM 994 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + + ++ + L++ + EL+G ++ E Sbjct: 995 RDLEIRGAGNLIGAQQHG-------HLAALGFELYSQMLKEAVQELKGEQVEEKIETSIE 1047 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 108/658 (16%), Positives = 227/658 (34%), Gaps = 64/658 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 ++ + +RL EG+ Q + G G+ +TF +A V L RP +V+ N Sbjct: 1 MSKNIFSLMQENSEFKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITEN 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + +A ++ +++ F + +F + ++ R+ Sbjct: 60 EQVAREIAEDLEFFLGDKTSRFFYREGFLFDLT-------------VREGGELKASRIEL 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 K + V + A+ P + + L VG +++ ++R L+++ Y R D Sbjct: 107 LKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVD 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F RG ++D++ ++ R E F +E++ L D + + + + IYP Sbjct: 167 QVEAPGQFSQRGGIVDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYP 224 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + +++ ++I ++ + K L++ NK RL ++ E++N LG Sbjct: 225 AEVAVAEEDLLLEVKQKISADIEQQVKKLIQQNKREAAGRLKEK---GAEVLNILGKSEV 281 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 IE + +L DY + L+ +DE QI + + R + G Sbjct: 282 IEKLLPYFWSGV------SLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGG 335 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + + + L + +++ + + D P Sbjct: 336 YTLPKQAEVFYEEEQLMALLRGRIAVITSLLPK-----TPRFIGDYDPHNFAGRKPP--- 387 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +I+ A N R+ + + A L L + ++ E+ Sbjct: 388 -NYLGKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFV-------EK 439 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E+ R + +G+ +L G + P+ L+ D + G R Sbjct: 440 FEVEIAPRE----IKIGLGVLNSGFEFPQQKLLVYTDVELAGRAVKAR------------ 483 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + KY + G K + I G++ Sbjct: 484 ---VTKAVLGERAEEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRLY 540 Query: 606 TKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + G + V D P + Q+ + ++ + + A+ L A ++ Sbjct: 541 VPPEQVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAK 598 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/439 (16%), Positives = 130/439 (29%), Gaps = 37/439 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + ++ A Q E Sbjct: 633 KRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKER 692 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 SG R LS + L + +V +H + Y Sbjct: 693 ------FSGYPVEIRLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLM 746 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G L + ++ATP L + + D V T Sbjct: 747 IVDEEQRFGVAQKERLKILTET--------VDVLTLTATPIPRTLHMALMGIRDLSVLNT 798 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 + V + ++ IR+ +V +++ +++ +V Sbjct: 799 PPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKV 858 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + ++ + G++DVLV ++ G+D+P V+ + I +AD+ G + Sbjct: 859 AVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGLAQ--- 915 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ I Y + K + E +R K E G GL + Sbjct: 916 -LYQLRGRVGRSNR---IAYAYLM-YEKDKVLREAAEKRLAAIKEFTEFG---SGLKLAM 967 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM--MQHAQNLE 651 D+ G + V DM K LQ+ + EL+G + + LE Sbjct: 968 RDLEIRGAGNLLGPEQHG-------HIAAVGFDMYMKLLQETVAELKGQVTSEEVEPQLE 1020 Query: 652 FEEAAQIRDQLHQLRELFI 670 A I + + I Sbjct: 1021 LNLTAYIPESYIPDEKQKI 1039 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 114/649 (17%), Positives = 199/649 (30%), Gaps = 70/649 (10%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 + + LE G H L G+ GS +A+++A R +VL P++ A + E+ F Sbjct: 14 ATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFA 73 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVAS 141 + P+ D S + I RL + VV Sbjct: 74 SPSHAPLS------------FPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMP 121 Query: 142 VSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 V+A L+ + +L G ++ +L RL ++ YA RGTF VRG ++ Sbjct: 122 VAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGIL 181 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 DIFP +R+E F + E + FDPLT + + + + P + + Sbjct: 182 DIFPPNLS-APVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIILTDGVLADIA 240 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L L R + LE + Y G+E L Sbjct: 241 PR----LKGCCDDLEIPAN---------RRREILENLKSAVYFRGVEYLQPLLHPGL--- 284 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-----GGMYRGDRARKETLVEYGFRLPSALDNR 375 T+FDY P L ++D I + + G+ ++ + + R LD Sbjct: 285 --ETIFDYAPDASLALLDPQ--AIQEAITTFGRELEDGEATARQNGLPHSPRQELYLDGE 340 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQ- 431 L+ + + V D + V TQ Sbjct: 341 QLRELMENRGRLELSGLLLEEPQG-----------PAVITIPCQDNTDLRVTVSKETTQA 389 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L +RQ RVL+ AE L E L + + + E D Sbjct: 390 LTPLSRSLRQWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAETVQGEAQGD 449 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 L+ + L G + E LV I + + G ++ G + Sbjct: 450 ASPDGVVTLLQGD-LSRGFRLLEARLVLIAEEELFG------KRVRRRGISEVRKKQILS 502 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + Y I+ G+ + + G + Sbjct: 503 SLAELKPGDHMVHVDHGIGL------YRGLQHISVSGVGGDFLLLEYNGGDKLYLPVDRL 556 Query: 612 GKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V P+ + + ++ + + + A L A + Sbjct: 557 ALVQRYVGPEGSSPSLDKLGGVSWEKSKGKARKAIEELAGELLEIYAKR 605 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 64/440 (14%), Positives = 133/440 (30%), Gaps = 42/440 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P V + ++ A + Q + E + Sbjct: 645 DMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHFETFHERLK 704 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 E Y +E SRF + + + + L + +V +H + + Sbjct: 705 E--YPVRVEALSRFRTPKEQKA----ILERLKKGEIDIVIGTHRLLQKDVAFKDLGLLII 758 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + + ++ATP L S + D + T Sbjct: 759 DEEQRFGVKDKER--------LKAFRAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPP 810 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEHGERV 473 +D + VA ++L+ I + +V + AE + + E V Sbjct: 811 VDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPEAKIAV 870 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E +++ GE ++L+ ++ GLD+P + + + AD+ G + Sbjct: 871 G--HGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQ--- 925 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ S + R R K + E G G Sbjct: 926 -LYQLRGRVGRSSQRGYAYLLIPGEGS----LTSDARERLKILQDISELG---AGFRIAT 977 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNLE 651 D+ G + + ++ + L++ I + G + Q + Sbjct: 978 HDMEIRGAGDMLGSRQSGTVI-------EIGFELYNQMLEETICRMRGEEMIEQVEPEIN 1030 Query: 652 FEEAAQIRD-QLHQLRELFI 670 + A I + + + + Sbjct: 1031 LKVPAFIPETYVRDTGQRLV 1050 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 112/353 (31%), Gaps = 25/353 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I H V + + + ++L E + Sbjct: 229 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 288 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + + P L D++ + + + ++ + + M Sbjct: 289 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 348 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + +PS + QT+ SAT + + + + Sbjct: 349 DMGFEPQIRKIIEESNMPSG-------------INRQTLMFSATFPKEIQKLAADFLYNY 395 Query: 412 VVRPTGLL----DPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + G + D I + T V+ L L I A N +L+ TK+ A+ L + Sbjct: 396 IFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARF 455 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G V +H D VER + R G+ +LV + GLD+P V V D Sbjct: 456 LLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLP- 514 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R +G+A + ++A + + + + Sbjct: 515 ----SDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEANQIVP 563 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 61/476 (12%), Positives = 128/476 (26%), Gaps = 49/476 (10%) Query: 181 YARNDQAFQRG-----------TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFD 228 Y R+ + RG V+D+ ++ ++ Sbjct: 76 YRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMV 135 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + + H R E R Sbjct: 136 GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC- 194 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 G G + P L D+L + +++ + + Sbjct: 195 ---RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 251 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + + K + QT+ SAT + + + Sbjct: 252 RMLD-----------------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMA 459 D + G L+ I++V + + L+ + + + E + +V TKR Sbjct: 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRC 354 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++LT + G +H D ER ++ + + G+ +L+ ++ GLD+ +V V Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D S I IGR AR+ G A + + R + Sbjct: 415 NYDYPN-----SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN- 468 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + + + + + G+ L++ Sbjct: 469 PKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKR 524 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 109/346 (31%), Gaps = 33/346 (9%) Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-LEMMNELGYCSGIENYSRFLSG 315 +E +A E + +++ + + G G + Sbjct: 222 QPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGV 281 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D+L + +++ + + M + Sbjct: 282 EIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIR--------------- 326 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K + Q + SAT + + + + + G L I++V Sbjct: 327 --KIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCD 384 Query: 428 VATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 ++ L+ + +A NE + ++ TK+ +++T + G R +H D ER Sbjct: 385 ENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERD 444 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 ++ R G +LV ++ GLD+ +V V D + + IGR R+ Sbjct: 445 FVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYP-----SNSEDYVHRIGRTGRSN 499 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 N G A + A + + R + + G NK Sbjct: 500 NTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNK 545 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 105/667 (15%), Positives = 228/667 (34%), Gaps = 57/667 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNK 67 + + + I + G + G + K+ I + +R +++ ++ Sbjct: 2 NLLTKPLLELKEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A ++ +MK + + P+ D I RL Sbjct: 62 IRAGEIQTDMKLY---------------DKKAVIYPAKDIMFFAADVHGNAIISGRLEVL 106 Query: 128 KAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 K ++E + ++ S+ A + + + ++ L+V D + RRL+EL Y + Q Sbjct: 107 KRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQ 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 +G F VRG++ DIFP +++ R+E + +E++ + FD + + + + +YP Sbjct: 167 VSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPA 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 T + ER + ++++ +E K K E R+ + + + G GI Sbjct: 226 TEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGI 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 ++Y + + T FDY + + +DE + + R + G+ Sbjct: 286 DSYINYF-----FDETETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTKGY 340 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 L D + L ++ + + + D + R Sbjct: 341 ILSKQADTIWDYKKVLAKLESKSTVLLSLLETRTGDIKAKQRFDVLSRNVNP-------- 392 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L+ ++ + +V+V + +K AE L E E YL T ER+ Sbjct: 393 -YNNSFETLIKDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYL----STDERV 447 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + V+ LR G + P + I ++D G + + + Sbjct: 448 PVSGE-------VVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKKTN-----------R 489 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 K I + S Y T +G+ K V + G Sbjct: 490 KKKKIDGASIASFSELHEGDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVDYSGDVSIFV 549 Query: 607 KAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + + + +A ++ ++ + + A++L A + ++Q Sbjct: 550 PTTNLDVLQKYSSANGAKPKIDKIGGQAWKKTKSKVRQSISEIARDLVELYAKRQQEQGF 609 Query: 664 QLRELFI 670 + + + Sbjct: 610 RYGKDTV 616 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/441 (17%), Positives = 136/441 (30%), Gaps = 43/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 +I V + I+ A + + Q + Sbjct: 641 KADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVMLVPTTILAGQHYTTFSKR 700 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M FLS + + L A + +V +H + Sbjct: 701 MQNFPITVE------FLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAEIKYKDLGLL 754 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP L S + D V Sbjct: 755 IIDEE--------QRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMSVLEE 806 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 +D I V D+++ I + N +V ++ L E G RV Sbjct: 807 PPVDRIPIQTYVLEHDDEIIREAINREIGRNGQVYYVYNRVSGIDERAAKLAELIPGARV 866 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H ++ E I+ + GE DVLV ++ GLD+ V+ + I DADK G + Sbjct: 867 SFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLSQ--- 923 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + + + + E +R K + G G + Sbjct: 924 -LYQLRGRVGRSSR---TSFAFLM-YKRDRMLKEIAEKRLAAIKEFTDLG---SGFKIAM 975 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA------ 647 D+ G K++ + V D+ K L +++ L+G + Sbjct: 976 KDLEIRGAGNLLGKSQSG-------HMEAVGYDLYCKMLNEEVKRLKGEKVAADEFETAV 1028 Query: 648 --QNLEFEEAAQIRDQLHQLR 666 + + A IR+++ +L Sbjct: 1029 DIEASAYIPADYIRNEVARLE 1049 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 59/388 (15%), Positives = 115/388 (29%), Gaps = 38/388 (9%) Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM-MNELGYCSGIENYSR 311 + + +A E + + T + G G + Sbjct: 140 HIKNQPPLRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLREL 199 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D+L + + S++ + + M L Sbjct: 200 SRGVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRM-----------------LDMG 242 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPII 423 + + + QT+ SAT + + D V G + I+ Sbjct: 243 FEPQIKQIIGSIKCPRQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIV 302 Query: 424 EVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 EV + D L + + ++ +V TK+ ++ L+ L G V +H D Sbjct: 303 EVCREEEKEDKLCKLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQ 362 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER ++ + R G VL+ ++ GLD+ +V LV D F + + IGR Sbjct: 363 SERDRVLSEFRSGRIPVLIATDVAARGLDISDVKLVINYD-----FPNNSEDYVHRIGRT 417 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI---LA 598 AR+ G A + + + R + N + ++ Sbjct: 418 ARSGKTGTAYTFFTASNIRQSPNLIALLREANQ--PINPDLIQLGDAARAEMAQKHRGKM 475 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 G++ + + P + Sbjct: 476 RGRDRFYNRDRNASNRYPYAKSKLSGSY 503 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 123/668 (18%), Positives = 217/668 (32%), Gaps = 60/668 (8%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A + + Sbjct: 10 GPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETF 69 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F V + P D ++ +E +R+ +L Sbjct: 70 QDLSLFLGSGKVLLY-------------PPWDIQTTDMFALQRDVELVRMEVLARLLTDE 116 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+VAS+ A+ P L L L G + + ++ +L Y R +G F Sbjct: 117 PAVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEF 176 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 177 SLRGHVLDIFPP-LEDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSE 235 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQR--LTQRTQFDLEMMNELGYCSGIENYSR 311 ER +A++ I+ AA ++L E L+ + + Sbjct: 236 ERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPT 295 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDES-------HVTIPQIGGMYRGDRARKETLVEY 364 + T FDYLP + +V+D++ +I + +E Sbjct: 296 ENATATQAVRLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGKFYLER 355 Query: 365 G------FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 L E AL T Y S G + + L Sbjct: 356 EASYVTKDAFIKDLRRFQRMILEGLALGRLTEYASG-NGEKTQASQYESLPLPLATDPEL 414 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 D T + L+ IR+ V K + + L + VR Sbjct: 415 GDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPVRTPEG 474 Query: 479 DIDTVERMEIIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + I VL + L P++ L AI + + G + Sbjct: 475 SL-------ISEAFLHSGPGVLSLREGRLSRSFLFPDLKLAAISEEELFGKKIT------ 521 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 GR R+ + +E ++EHGI +K+ Sbjct: 522 --GRRIRSAR-------------EGYFLRSFGDLKEGDYVVHKEHGIGLYQGLQKLSVGG 566 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + G PI D + + P+ K+ +L G + + + Sbjct: 567 IENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRERVKKSIQE 626 Query: 658 IRDQLHQL 665 + ++L + Sbjct: 627 VAEELVAI 634 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 124/435 (28%), Gaps = 39/435 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ + Q Q M + Sbjct: 684 PMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSRMKDYPI-- 741 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L+ ++ + L + +V +H + + + Sbjct: 742 ----RIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEE--- 794 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 + + + ++ATP L S + D + T D I Sbjct: 795 -----QRFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTI 849 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + + + + IR+ A N +V R + +E+ +H + Sbjct: 850 KTYVLEFNEETIREAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMK 909 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ E +VLV ++ GLD+P + + + AD+ G + L Q GR Sbjct: 910 PREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQ----LYQIRGR 965 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + ++R + E G G D+ G Sbjct: 966 VGRSSEE---AYAYLLVPK-GVLLSRDAQKRLQVIMDFSEPG---SGFRIASSDMEIRGG 1018 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL---MMQHAQNLEF-EEAAQ 657 ++ V ++ + ++Q I E++G + + A Sbjct: 1019 GNLLGTSQSG-------HVSAVGYELYTELMEQTIREIKGETIPEEEIVPEINLGLPAFI 1071 Query: 658 IRDQLHQLRELFIAA 672 + + + + Sbjct: 1072 PEEYMADVHRRLVTY 1086 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 62/476 (13%), Positives = 126/476 (26%), Gaps = 84/476 (17%) Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR----------------GT 192 P + L D + + + +N Sbjct: 26 LPPKKFGNPGERLRK-KKWDLSELPK------FEKNFYVEHPEVARLTPYEVDELRRKKE 78 Query: 193 FRVRGEVIDIFPAE----------------------SDDIALRVELFDEEVERLSLFDPL 230 VRG D+ P ++ ++ + F + + Sbjct: 79 ITVRGG--DVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL-SGRDMVGI 135 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + H R + + Sbjct: 136 AQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK----C 191 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 G G + P L D+L + + +++ + + M Sbjct: 192 SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRM 251 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + K + QT+ SAT + + + D Sbjct: 252 LD-----------------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRD 294 Query: 411 QVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAED 461 G L+ I++V + + L+ + + A E + ++ TKR +D Sbjct: 295 YTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDD 354 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 LT + G +H D ER ++ + R G+ +L+ ++ GLD+ +V V Sbjct: 355 LTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINY 414 Query: 522 DADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 D S + IGR AR+ G A + A+ + + + Sbjct: 415 DYPN-----SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 115/658 (17%), Positives = 195/658 (29%), Gaps = 78/658 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 D L +E + GV+G K I ++ A R +VLA ++ Sbjct: 4 LSTLLDGVTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEG 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ V P+ D + E RL M Sbjct: 64 QRLCNDLSSMGTAALV---------------YPARDFNFRAAEGQSREYEHQRLQVMAGM 108 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L+ VV++ + A PD L L G I L+ Y R Q Sbjct: 109 LDGDYQVVISCIDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEG 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTH 248 G F VRG ++D F +RVE + +E++ L FDP T + + T+ P T Sbjct: 169 PGQFAVRGGILDFFTP-DASAPVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTE 227 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + LA + + L + R +R + + + + Sbjct: 228 VLVSSPGS----------LAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADK 277 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + L P TL DYL + L+ E ++ + +E G Sbjct: 278 FLPLLYP-----SPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEGILC 332 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + L + T + +++ ++ Sbjct: 333 KGLDAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPLSSLINL---------NARQLSVW 383 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L ++ + R++V T+R A E L+ G Y R + Sbjct: 384 GGGMQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEY---------RDDA 434 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 G VL L G + P + I + R R N Sbjct: 435 KTLFL-GRVTVL--PGSLSAGFEYPTANFALITHGHFAAAPKRARK---------RQKNA 482 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 K I + S + H + QG+ K + + A Sbjct: 483 KEI-----YSLSELAPGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKV---------RYA 528 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 KG P+ + D V + PK + +++ L G Q A+ I +L +L Sbjct: 529 KGDILYVPVTQLDMVSKYIGPKEEVKVRLNRLGGQDWQKAKARVRSAVKDIAKELIKL 586 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 64/443 (14%), Positives = 127/443 (28%), Gaps = 43/443 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ + Q Q + Sbjct: 628 KEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVTDSKQCALLVPTTILAWQHYQTVTQR 687 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G+ +E SRF + + + L + ++ +H + + Sbjct: 688 FE--GFPIKVEILSRFRTP----KQQAEILKQLKRGEIDMIIGTHRLVQKDVQFRDLGLV 741 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + +SATP L + + D Sbjct: 742 IIDEEQRFGVAQKERF--------KSVTKNVDVLTLSATPIPRTLNMALSGIRDMSSLEE 793 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 D V ++ +R+ +V E + L+ +V Sbjct: 794 APQDRHPVQTYVLEYDQAVINDAVRRELRRGGQVYYLHNKVESIERVAARLQAQIPEAKV 853 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + E E+ R + E +VLV ++ G+D+P V+ + I DAD G + Sbjct: 854 GFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQ--- 910 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + I + +A Y K + E ++R + E G G + Sbjct: 911 --LHQIRGRVGRSSRRAYAYLTFT---RNKVLSEISQKRLAAIREFTEFG---SGFKIAM 962 Query: 594 VDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 D+ G I + G + V DM + L + + E +G + LE Sbjct: 963 RDLELRGAGNILGGEQHG--------HMETVGYDMYLRLLGEAVSEEKGE-EASSYELEC 1013 Query: 653 E-----EAAQIRDQLHQLRELFI 670 +A + L + Sbjct: 1014 LVDVQVQAHIPEGYIESLSQRLE 1036 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 102/657 (15%), Positives = 196/657 (29%), Gaps = 84/657 (12%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +RL ++ G G++ + A + L R +VL ++ A ++ ++ Sbjct: 6 PEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLA 65 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 E + + + A V+ E RLS +A+ ++ Sbjct: 66 FLTGE--------------QVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLL 111 Query: 139 VASVS-AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V ++ A+ L + L VG D + L Y R +Q G F +RG Sbjct: 112 VCTIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRG 171 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++D + ++D +RVE F +E + + LFD T + V Sbjct: 172 GILDFYSP-AEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSA-----EILPAAEVLPQ 225 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A L A ++ + + L + + D E + E ++ Y + Sbjct: 226 FAPGGYAGLLEAMDGLIARAKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYPH- 284 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 T DY P D +++ ES + + L+E G L L Sbjct: 285 ----MATAADYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAG-VLAGELSEFAR 339 Query: 378 KFEEFEALAPQTIYVS------ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 FEE + + V A ++ Sbjct: 340 TFEELCGVLEEWPVVYLDNFVGAQYPRRPRTLLNLLCK--------------QLPSYGAS 385 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY---LHSDIDTVERMEI 488 ++ +S++ N +V +++ A +L L E G + LH Sbjct: 386 LETAVSDLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAVDFLLH----------- 434 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++ + L G++ PE + + G + + A Sbjct: 435 -KLPAPGKA--VIAVGGLSGGMEYPEARCAVLTEGQAAGVKKKKVK--------AVTNRQ 483 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 K Y D + R + K G+ K V I G ++ A Sbjct: 484 KLGSYADLSVGDLVVHEHHGIGRYQGMVKMP------VDGIQKDYVKIAYAGADVLYVPA 537 Query: 609 KGRGKSRPI------VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + ++ + + A+ L A + R Sbjct: 538 TQLDLVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGLIQLYAQRQR 594 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 60/432 (13%), Positives = 119/432 (27%), Gaps = 39/432 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + + + + Q + + Y Sbjct: 638 PMDRLLCGDVGYGKTEVAFRAIMKCVLDGKQAAILVPTTVLARQHYLSAKQRFAK--YPV 695 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 I+ SRF + E + A + ++ +H + + Sbjct: 696 EIDVVSRFRTPAQMKETLRR----VEAGQIDLLIGTHRLFQKDVKFKDLGLLVIDEE--- 748 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 + + + + +SATP L + + D D + Sbjct: 749 -----QRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQPV 803 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GERVRYLHSDI 480 + + L +R+ +V + E V H + Sbjct: 804 QTYVLEHDWGVLFDAMRRELERGGQVYYLHNRVETITRTAARIREMLGEDVTVGVAHGKM 863 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ + GE DVLV ++ G+D+ + + I DADK G + + I Sbjct: 864 SQEELNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDADKMGLAQ-----LHQIR 918 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + +A Y K + E +R + E G G + D+ G Sbjct: 919 GRVGRSSRRAYAYLTF---RRGKVLSEVASKRLGAIREFAEFG---SGFKIAMRDLEIRG 972 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LEFEEAAQI 658 + +V D+ K L++ + E G Q + AA I Sbjct: 973 AGNVLGPEQSGFL-------MSVGYDLYLKLLEEAVLEERGEKAQIPAECSADLSVAASI 1025 Query: 659 RD-QLHQLRELF 669 D + + Sbjct: 1026 PDRYVPSPEQRM 1037 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 105/657 (15%), Positives = 215/657 (32%), Gaps = 70/657 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + + + L Q +LG++GS K + L + +++ P A Sbjct: 4 LHQTISKLKGFKEWFDTLSL-HESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q Y E+ E++ E+ V F P ++ + V+ + R+ + Sbjct: 63 TQTYEELSEWYDEDIVHLF-------------PVEESLAADFSVVSPDVVSQRIRTLDFL 109 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIID-QRAILRRLAELQYARNDQAF 188 + +V+ +S I L L+ K + L +G I+ A + RL EL Y R + Sbjct: 110 SRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMGSEIESMDAFVERLVELGYRRENMVA 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++DI+P + LR++ FD EV+ + F+ T + + I I P T Sbjct: 170 TPGEFALRGSIVDIYPL-DQEYPLRLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATD 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +E + +A +I K + + + Q + S + Sbjct: 229 LPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVSSIQQAID---AQLENGEIPSNLPY 285 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + +L DY+ D L++D+ I + + K +E G Sbjct: 286 FLECIYPEKT-----SLLDYVSKDAYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIA 340 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + E+ +T L + + + + Sbjct: 341 SGLSLVQDGRKLLKESPLKRTY----------LAIFQKGLGRLSLDAIHPI-TTRTMTQF 389 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + E + V+V + A+ + + + + + Sbjct: 390 FSQMPMVKVEADRWKKQGATVIVLVDDAKRAQKVEQTFADFDIKSVISNG---------- 439 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++V + G ++PE + + + L Q I A R Sbjct: 440 --TVLEGQLQIMV--GKMHNGFELPEDKFAILTERELFNKLTKRAPRNQKISNAERLK-- 493 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 Y + + + E GI ++ Sbjct: 494 ---SYTELAVGDYVVH-VNHGVGVYQGMETLEIGGIHQDYMSIHY--------------Q 535 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + V +S A K+++L G + + I D+L +L Sbjct: 536 DGGNLFVPVSQIKLVQKYVSSDAKVPKLNKLGGTEWAKTKRKVAAKIEDIADELIEL 592 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 68/441 (15%), Positives = 136/441 (30%), Gaps = 43/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q + ++ Sbjct: 634 KEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTILAEQHYENFVQR 693 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++ + G+ + R + L + +V +H + + Sbjct: 694 FSDYPFKIGLLSRFRSK------KEQEETIKKLRKGSVDIVIGTHRLLSKDVQFLDLGLL 747 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S V D V T Sbjct: 748 IVDEEQRFGVKHKER--------LKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIET 799 Query: 417 GLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 + V Q + + I + A +V E + L G RV Sbjct: 800 PPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKADELRVLVPGCRV 859 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H + I+ GE+DVLV ++ G+D+P V+ + I +AD G + Sbjct: 860 GVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQ--- 916 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R I Y + K + E +R + + E G G + Sbjct: 917 -LYQLRGRVGRTNR---IAYAYLM-YQPDKVLTEVSEKRLQAMRDFTELG---SGFKIAM 968 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL--- 650 D+ G K + D+V D+ + L + + + +G ++ + Sbjct: 969 RDLSIRGAGNLLGKQQHGF-------IDSVGFDLYSQLLSEAVLKKQGKEVKSDEETVEI 1021 Query: 651 -----EFEEAAQIRDQLHQLR 666 + A+ I+D+ ++ Sbjct: 1022 DLQIDAYIPASYIQDERQKIE 1042 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 111/667 (16%), Positives = 199/667 (29%), Gaps = 69/667 (10%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++L + TL+ S + + + P +V+ Sbjct: 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATG 69 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A L E++ F + A +PS +T + S RL A Sbjct: 70 READDLAAELRGVFGDA--------------VALLPSWETLPHERLSPGVDTVGTRLMAL 115 Query: 128 KAMLERRD-------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + + D VVV SV ++ P L + L LTVG ++ RL EL Sbjct: 116 RRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELA 175 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y R D +RG F VRG ++DIF + + +RVE + +E+ + +F + + I Sbjct: 176 YTRVDMVGRRGEFAVRGGILDIFAP-TAEHPVRVEFWGDEITEMRMFSVADQRSIPEID- 233 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 E + E R L E +T L + E Sbjct: 234 ----------IHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEG 283 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+E L G L D LP ++V + + + R R E Sbjct: 284 IAVDGMEAVLPVLWSDGHAL----LTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEA 339 Query: 361 --LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 V + + + + +A + + + D+ + Sbjct: 340 SWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHP-WWTLSQLSDESAIELDV 398 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 R +D++ + +R A + A + E L E L Sbjct: 399 RA-APSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGML-- 455 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + + + G VL LR+G+ +P +LV I + D G S Sbjct: 456 --------DPGQAPKPGVVGVL--QGPLRDGVIIPGANLVVITETDLTGSRVSAAE---- 501 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G+ + P A + ++ E T G ++ + + Sbjct: 502 -GKRLAAKRRNIV------DPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEY 554 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 P+ D + + + + L G + + +I Sbjct: 555 ASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ--APALSRLGGSDWANTKTKARRAVREI 612 Query: 659 RDQLHQL 665 +L L Sbjct: 613 AGELVSL 619 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 65/465 (13%), Positives = 123/465 (26%), Gaps = 38/465 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + EL ++ D LT P + + ++ Sbjct: 630 AFSPDTPWQAEL-EDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVR 688 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + Q Q SG + LS Sbjct: 689 AAFKAVQDGKQVAVLVPTTLLADQHLQTF------GERMSGFPVTIKGLSRFTDAAESRA 742 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + D L + +V +H + + + + Sbjct: 743 VIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEE--------QRFGVEHKEHIKSLR 794 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRA 443 + +SATP LE S + + T + + V D + + +R+ Sbjct: 795 THVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRREL 854 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 + + + + E R + H + ++ E D+LV Sbjct: 855 LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + + AD G + L Q GR R+ + Sbjct: 915 CTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYP----P 966 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEP 620 + ET R N E G G+ + D+ G + G Sbjct: 967 QVPLTETAYDRLATIAQNNELG---AGMAVALKDLEIRGAGNVLGIEQSG--------HV 1015 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 V D+ + + + + A A + +D L Sbjct: 1016 AGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 114/695 (16%), Positives = 212/695 (30%), Gaps = 82/695 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++ L L + G+ +T +A P + L Sbjct: 7 ATVLAEITAIAPVQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTT 66 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + +++++ + V F P+SD + S I RL Sbjct: 67 DAALRAHEDLRQWIGTDRVFLF-------------PASDALPYEHMSTGADILTARLRVL 113 Query: 128 KAMLERR-------DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + V+VA V A+ PD + L GM ++ RL + Sbjct: 114 HRLAAFNAGDVDVAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAM 173 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + G RG +ID+F DD+ LR+E F +E++ L FDPLT + + I Sbjct: 174 GYRYAPTVEEPGEVNRRGGIIDVFSPG-DDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIR 232 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I P + R + + R + L E + + + Sbjct: 233 AAIIGPPHEFPLWRRDVALERMRAIDTSMLRHEALDEWLQAF-------------DHIRN 279 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G ++ F + P TL +LP +V+ E+ + + + R+ Sbjct: 280 GERFEGRALFAPFFRDN--PQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRR 337 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--- 416 ++ G + E T+ + + + D P Sbjct: 338 QQIDAGELPAAFPRPYLRWHELMALAEAHTLVNLSNNEHP---FWDVLLSDPAPLPPSFS 394 Query: 417 -----GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 G P+ + R V D + L +R+ +D+ E L GE Sbjct: 395 FGEQNGNPAPLTDTRNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRA-GE 453 Query: 472 RVRYLHSDIDTVER------MEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAIL 521 RV + R + RD G +V+ G+ +L EG MP ++L Sbjct: 454 RVVLIT---PQAARLQELVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYS 510 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 D + G+ + + + + E Sbjct: 511 DTEIFGWRQRR----------------IIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIE 554 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 HGI + + A+G P+ + D V + ++ ++ L Sbjct: 555 HGIAVYEGLIRRSVGGIERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGT 614 Query: 642 LMMQHAQNLEFEEAAQIRDQLHQL---RELFIAAS 673 + A+ + ++L L R+L + Sbjct: 615 QDWERAKRKARAAVQDLAEELITLYAQRQLAEGHA 649 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 109/401 (27%), Gaps = 35/401 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q M Sbjct: 688 PMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSRRMAAFPV-- 745 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + + L + ++ +H + + + + Sbjct: 746 ----RIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRF 801 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + ++ATP L + + D + T D I Sbjct: 802 GVRHKER--------IKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + L+ I + +V + + + L R H ++ Sbjct: 854 KTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLE 913 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D G DVLV ++ GLD+P + + I DA G + L Q GR Sbjct: 914 EHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQ----LYQLRGR 969 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ K + R + + E G G + D+ G Sbjct: 970 VGRSTQRAYAYLFYKSERPSTPE----AQERLRAIQEATELG---AGFRIAMRDLEIRGA 1022 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + V D+ + L+Q + L+ Sbjct: 1023 GNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRTLKQR 1056 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 102/681 (14%), Positives = 226/681 (33%), Gaps = 84/681 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + F+P + + +E +DG + G + K + + ++ +V+ + Sbjct: 1 MKAIFEPVYNTAGVEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSD 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + F N Y P+ D I R+ Sbjct: 60 EGKARDMAEDARFFNGGN--------------VMYYPAKDVIFYNADVQGRQIAGERIRC 105 Query: 127 TKAM--------------------LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGM 165 A+ + +V ++ I + P D + + +++L G Sbjct: 106 IAAIIDRLNKSDIVKSGTEKSTEEASDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGD 165 Query: 166 IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLS 225 I+D + ++L + + R +G F +RG +IDIF +D+ +R+EL+D+E++ + Sbjct: 166 ILDVEDMAKKLTAMGFERFGMVEAKGQFAIRGGIIDIFS-YTDEAPVRIELWDDEIDSIR 224 Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 FD + + + +T++P T ++ + I Q +E+I+ E + K+ + + +++ Sbjct: 225 AFDADSQRSIENYKSYTVFPATEFLFTEDEIEQGIEKIRHEKDEQMKLFGADKRKRTKEQ 284 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTI 344 + + M ++ + + R +L +Y P L+VVDE Sbjct: 285 IEAGNHLNR-MFDDALRTGDYSKFIYTFADRVS-----SLAEYFPKGDTLIVVDEPVRLK 338 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSA--LDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + +E G+ LPS + Q + + Sbjct: 339 EHSDMTFYEYSESMKNRLESGYVLPSQTHMFMDMETAVLSMNGHKQLVLTTLEYTPE--- 395 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 +D + + + L +IR+ VL+ ++ A + Sbjct: 396 ---FFGIDYSMHIEARS-----ISSYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRI 447 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L G Y + + + G V+V L G + P V I + Sbjct: 448 VDDLGRLGIESFYT---------EDSNKSMAGG--LVMVTYGSLHRGFEYPLQGFVCIAE 496 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 D + +R + +GK I + +Y Sbjct: 497 NDIFTEKKRKRV-------KKKEYDGKNIAGF-----NELNIGDYVVHENYGIGQYKGIE 544 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM----DMSPKALQQKIHE 638 I +G+ K + I + A + + D + + + Sbjct: 545 KIKVEGVEKDYIKISYADNSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSK 604 Query: 639 LEGLMMQHAQNLEFEEAAQIR 659 + + + A++L A + R Sbjct: 605 VHSAVEEVAKDLVELYATRQR 625 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/439 (15%), Positives = 136/439 (30%), Gaps = 42/439 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A ++ + +Q + Sbjct: 661 KHDMESRRVMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVAYLVPTTVLASQHFTTFEQR 720 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + LS + L + +V +H + + Sbjct: 721 MKDFPVT------VAQLSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLL 774 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + +SATP L S + D V Sbjct: 775 IIDEEQRFGVT--------HKEKIKKLKNNVDVLTLSATPIPRTLHMSLAGIRDMSVLEE 826 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 +D + V D+++ I + A N +V R ++ +++E V Sbjct: 827 PPVDRVPIQTFVTEHNDEMIREAITRELARNGQVYYVYNRVRSIDEAAAHIQELVPDANV 886 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + E +I+ D GE DVLV ++ G+D+ + + I DAD+ G + Sbjct: 887 AYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQ--- 943 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A + K + E +R + + G G + Sbjct: 944 -LYQLRGRVGRSSR-TAYAFLL---YRRDKVLTEVAEKRLSVIREFADFG---SGFKIAM 995 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL--- 650 D+ G ++ V D+ K L Q ++ L+G+ ++ Sbjct: 996 KDLEIRGAGNVLGNSQHG-------HMAAVGYDLYCKMLNQAVNNLKGIKNEYEFETTID 1048 Query: 651 ----EFEEAAQIRDQLHQL 665 + A I+ + +L Sbjct: 1049 VDVDAYIPATYIKSEYQKL 1067 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 105/357 (29%), Gaps = 29/357 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQA---MEEIKEELAARRKVLLE-NNKLLEEQRLT 287 F + + LA E ++++ +E R Sbjct: 204 QTGSGKTAAFLLPILNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKF 263 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + G + P L D + + + + + Sbjct: 264 SYRSNIKPCVVYGGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEA 323 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + + +P A QT+ SAT + Sbjct: 324 DRMLDMGFEPQIRRIVEQHGMPPAG-------------KRQTLMFSATFPKEIQTLARDF 370 Query: 408 VVDQVVRPTGLL-----DPIIEVRPVATQ-VDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + G + + I EV VA + D+L + Q + LV TKR A+ Sbjct: 371 LHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQGKDPDGLALVFVETKRGADV 430 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L ++L + V +H D ER ++ R G +L+ + GLD+P V V Sbjct: 431 LAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIATAVAARGLDIPNVKHVINF 490 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + IGR R G A + + ++ + + E R ++ Sbjct: 491 DLP-----SDIEEYVHRIGRTGRMGQPGSATSFFSEKNQNVVRDLVELLRESKQAVP 542 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 245 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 65/357 (18%), Positives = 106/357 (29%), Gaps = 15/357 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L+ + + + T+ E + G+ Sbjct: 53 TGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQ 112 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +V+ I I D L E L Sbjct: 113 PIERQLRALKGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDI 172 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLL 436 QTI SAT L+ + D + P IE + + D L Sbjct: 173 FRDTPKDRQTILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKL 232 Query: 437 SEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + E LV TKR +DL ++ G V LH D+ +R ++ R Sbjct: 233 EALCRTLDMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRS 292 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G DVL+ ++ G+D+ +V +V D + + IGR AR GK++ + Sbjct: 293 GSIDVLIATDVAARGIDVDDVDIVFNYDVP-----QDVEYYVHRIGRTARAGRTGKSVTF 347 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGIT---PQGLNKKVVDILALGQNIAKTK 607 + I + + + + Q KV DI+A G Sbjct: 348 VAPREIYKLRDIQRYAKIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLP 404 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 245 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 118/671 (17%), Positives = 213/671 (31%), Gaps = 79/671 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F + P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELSFFTGGDEQL----------PVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 RL + R ++V ++ + L L L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP SD + R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGSD-LPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + P + + I ++ E K + ++ Sbjct: 244 EKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKEC-----------------PVFQDIS 286 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+E Y + LFDYLP + L+ + + + R Sbjct: 287 AGISPPGVEYYLPLF-----FDSCSNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYES 341 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG-NYELEKSGGDVVDQVVRPTG 417 + LP + + L Q S T N LE+ G +P Sbjct: 342 RRVDPLRPLLPPK-----DIYLSIDELYTQLKPYSRTFISNDILEERAGHYNFASCQPPN 396 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 L +R A Q + + RVL + E L E L R Sbjct: 397 LP-----IRAQAEQPLAAIEAFL--MEYHGRVLFCAESAGRRETLLELLGRIRVRPAP-- 447 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 E + + + + I L +GL + V I ++ G Sbjct: 448 --------AESWQAFLSSKESIAITIAPLEQGLQQQQPDTVLIAESQLFGERI------- 492 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + + + + + + +HG+ + + Sbjct: 493 -----------QQQRRRKQAQDNSELVVKNLTELKIGAPVVHIDHGVGRYRGLETITVDN 541 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + A P+ + + +H+L Q A+ E+ Sbjct: 542 QTNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKLGSESWQKAKRKAAEQIRD 601 Query: 658 IRDQLHQLREL 668 +L ++ Sbjct: 602 TAAELLEVYAR 612 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 64/455 (14%), Positives = 135/455 (29%), Gaps = 45/455 (9%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + + + P V + ++ A Sbjct: 641 PDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLA 700 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + + E + IE SRF + + + L + ++ +H + Sbjct: 701 QQHYESLKDRFAE--WPITIEVLSRFRTTKEVNQVLERL----AEGKVDIIVGTHKLLQP 754 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G R + + + ++ATP L S Sbjct: 755 DIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEI--------DILTLTATPIPRTLNMSMA 806 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T + V T + ++ I + +V E + Sbjct: 807 GIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARE 866 Query: 466 LEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E R H + + ++ D F+++V ++ G+D+P + + I A Sbjct: 867 LQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRA 926 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + Y +TP +A+ + +R + E+ G Sbjct: 927 DKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPER-RAMTDDAVKRLEAISAAEDLG 978 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GL 642 G D+ G + + + + + + L + + + G Sbjct: 979 ---AGFTLATYDMEIRGAGELLGEEQSG-------QIQTIGFSLYMEMLDRAVKAIRQGK 1028 Query: 643 MMQHAQNLE-------FEEAAQIRDQLHQLRELFI 670 Q L+ A D L + + Sbjct: 1029 QADIEQALKESIDINLRIPALIPSDYLPDVHLRLV 1063 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 54/347 (15%), Positives = 104/347 (29%), Gaps = 19/347 (5%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 V + + +++ + T+ + + Sbjct: 468 IALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEA 527 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKET 360 G + + G P L +VV + M + Sbjct: 528 LRFGRSSRISC-TCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLV 586 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L E L + + K QT+ +AT + + +V+ V G +D Sbjct: 587 LDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVD 646 Query: 421 ---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 +EV P + L +I + +V++ TKR+ + L + H Sbjct: 647 ELAANKAITQYVEVVPQMEKERRL-EQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-F 704 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +H D ER ++ R G+ VL+ ++ GLD+ ++ +V D F Sbjct: 705 GAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYD-----FPTG 759 Query: 532 ERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R G A + + A + + +Q Sbjct: 760 VEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVP 806 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 101/319 (31%), Gaps = 19/319 (5%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 K + N ++ + T+ + + G + + G P L Sbjct: 83 HLKRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSC-TCLYGGAPKGPQLRDL 141 Query: 330 PADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +VV + + L E L + + K + Q Sbjct: 142 DRGADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 201 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEI 439 T+ +AT + + +V+ V G +D +EV P + L +I Sbjct: 202 TLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRL-EQI 260 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++++ TK+M + L L +H D ER ++ R G V Sbjct: 261 LRSQEPGSKIIIFCSTKKMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPV 319 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 320 LVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFAEQD 374 Query: 559 PSMAKAIGETERRREKQQK 577 A + + ++ Sbjct: 375 AKYASDLVKVLEGANQRVP 393 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 66/362 (18%), Positives = 114/362 (31%), Gaps = 18/362 (4%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD TG P + + + + LL L Sbjct: 133 FDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVL 192 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + G + R G + D L +V+ I Sbjct: 193 AP-TRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRD-LSRGSEIVIATPGRLIDM 250 Query: 347 IG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + G R L E L + + K + QT+ SAT + + Sbjct: 251 LEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAA 310 Query: 406 GDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI-RQRAAINERVLVTTLTK 456 + D + G L+ I+EV + D L + + L+ TK Sbjct: 311 DYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTK 370 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 RM +D+T+YL E G +H D D ER ++++ R G ++V ++ G+D+ ++ Sbjct: 371 RMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGIN 430 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 V D + + IGR R G AI + + + + R + Sbjct: 431 YVINYDMP-----GNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQN 485 Query: 576 QK 577 Sbjct: 486 IP 487 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 101/670 (15%), Positives = 191/670 (28%), Gaps = 71/670 (10%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF ++ R ++ G + G+T S + A +P Sbjct: 1 MILPF--VRELFADVEKSPEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPL 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ P+ A +L P ++ + +P+ D ++ S + I+ Sbjct: 59 IVVVPSNRAAEEL-------LPIVQAYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQ 111 Query: 121 QMRLSATKAMLERRDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R +A ++ V+A V+ + Y + + G ID + L Sbjct: 112 EARAAALWKIVSGTARFVIAPFVATAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTS 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ D G + +RG ++DI+P ES+ +R+ELF +EVE + FD T + Sbjct: 172 GYSTVDVVEMPGEYALRGGILDIYPPESE-HPVRIELFGDEVESIRKFDTETQRSAGATD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 L + E+ +L+ R E E Sbjct: 231 EVV-----------------------LLPLSDTPVREDILGSIHAKLSGRRLDADEETLE 267 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + LFD LP + + A E Sbjct: 268 AIARAEGVTVFPGWEYYAGATANQRLFDLLPNAAV--------LRDDPVKIESDFEAWWE 319 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + + R RP + Q I + + + Sbjct: 320 RVQQSHERSGVGHLVRPEDLLDSPDTWQQRIASLPGADVE-----QLGMYSESGEQIAIQ 374 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 V ++ E++ RVL E L + E+ R Sbjct: 375 SQSTSK--FHGSVPAMVEEVKALLTDGRRVLFAAANTGEVERLADIFSEYMVPFRV--GS 430 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSL 535 T E + + + L +++ EG+ MPE V D + Sbjct: 431 RSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESEVASA- 489 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q R+ V+ + D + + + K + P Sbjct: 490 -QQPKRSRSKVSAFLSDFRDLTINDYVVHVEHGIGQY-QGLKEIAQGDGEPAEFMI---- 543 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 A+G P+ D + S + ++ ++ L + + Sbjct: 544 ---------LEYAEGARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAM 594 Query: 656 AQIRDQLHQL 665 + D+L +L Sbjct: 595 KDMADELLKL 604 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/459 (14%), Positives = 140/459 (30%), Gaps = 38/459 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD+ E D + P + + ++ A Sbjct: 626 FDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKTEVSMRAAFKAVSDNKQV 685 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + + + +E SRF + + E + + + Sbjct: 686 AVLAPTTVLAFQHFETFKRRFSA--FPVKVEMISRFRTAKQQKEIVER----VNNGQVDI 739 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + +G R + + +SATP Sbjct: 740 LIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKER--------LKQLRKEVDVLTMSATP 791 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S + D V T D + VA + L+ I Q ++ Sbjct: 792 IPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGGQIYFVHNR 851 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++++ + E + + L H + + +I+ + D+LV ++ GLD+P Sbjct: 852 VESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTIIENGLDIP 911 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + AD+ G L Q GR R+ Y + P + + E RRR Sbjct: 912 LCNTMIVNRADRHGLSE----LYQLRGRVGRSNRR---AYAYLLVPPD-RELTELARRRL 963 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + G G +D+ G + + + V ++ L+ Sbjct: 964 AALKEFSDLG---AGFKIAALDLELRGAGNLLGGEQSG-------QIEAVGFELYTTMLE 1013 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIR---DQLHQLRELF 669 + + E++G + + + IR + + + + Sbjct: 1014 RTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKEENQRL 1052 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 97/668 (14%), Positives = 201/668 (30%), Gaps = 65/668 (9%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF + + + + L + + G+T + ++ I + + P Sbjct: 1 MILPF--VRDLLADLEHTASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPV 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++L + A ++ ++ ++ + +P+ D ++ S + ++ Sbjct: 59 VLLVADNKAADAMHLALRA-------GCELTGAIAAERVLKLPAHDVLPFENMSPHPEVQ 111 Query: 121 QMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R + + +V+A V A L Y + L G ID +L LA + Sbjct: 112 EQRATTLWKIATGDAAIVIAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASV 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + D G + RG ++D++ E+D +R+E F +E+E + FDP + + S + Sbjct: 172 GYEQVDVVEMPGQYTRRGGILDVYSPEADR-PVRMEFFGDEIETMRKFDPESQRSQSPLD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P T + + T + EM+ E Sbjct: 231 EARLLPLTETPVTERLLAAVHARLSG--------------------ARFETNDEGEMVAE 270 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + + G TL D P +L V+E + Q+ + Sbjct: 271 MVAAGGVSVFPGWEFFAGVAGANKTLLDLFPR-CVLFVEEPGMIKNQVERWWNK------ 323 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + L + E L Q + + + D Sbjct: 324 VEQRHDRSSIGTLIRPEDIYLRPELLEAQRKSHPGLDIDQLG--AVDVLEDDETLGEIAF 381 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER----VRY 475 +R + + +I+ R+L+ + E L L E+ R Sbjct: 382 SSRPTLR-FHGSIPAFVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRLGSRV 440 Query: 476 LH--SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H S+ E + DLR +++ + G+ +P+ +LV D Sbjct: 441 MHTGSETMYDEASHLGGDLR---TPIILR-APIATGVSLPDANLVVFGANDLNDEADV-- 494 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 AR K+ +Y I G + Sbjct: 495 --------TARPAARKSKTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEF 546 Query: 594 VDILALGQNIAKTKAKGRGKSRPIV----EPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + + + + P V + + + ++ M A Sbjct: 547 MILEFAEEAKLYVPLTRLDLIQKYRSTESGPAPVLHRLGTQQWAKTKARVKKAMQDMADE 606 Query: 650 LEFEEAAQ 657 L A + Sbjct: 607 LLKLYAQR 614 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 144/460 (31%), Gaps = 40/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ + D L+ + P + + ++ A + Sbjct: 632 FEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGDVGYGKTEVAMRAAFKAVQDGKQV 691 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + + + + IE SRF + + + A + + Sbjct: 692 AVLTPTTVLSFQHYETFKKRFRQ--FPIHIEMLSRFRTAKEQKLIVER----VEAGEIDI 745 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + + +G R + + +SATP Sbjct: 746 LIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKER--------LKQLRAQLDVLTMSATP 797 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S + D V T D + VA + L+ + ++ Sbjct: 798 IPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVELERGGQIYFVHNR 857 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++ ++E R H + E +++ E+DVLV +++ GLD+P Sbjct: 858 VETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLVATSIIENGLDIP 917 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD+ G L Q GR R+ Y + P + + E RRR Sbjct: 918 LANTILINRADRHGLSE----LYQLRGRVGRSNRR---AYAYLMIPPE-QELTEIARRRL 969 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 K + G G +D+ G + G + V ++ L Sbjct: 970 AALKEFSDLG---AGFKIAALDLELRGAGNMLGGEQSG--------HIEAVGFELYTTML 1018 Query: 633 QQKIHELEGL--MMQHAQNLEFEEAAQIRD-QLHQLRELF 669 ++ +++++G + + L +I D + + + Sbjct: 1019 EEAVNKMKGQETVERPVTQLSLGIPLRIDDSYIPEENQRL 1058 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 104/360 (28%), Gaps = 32/360 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + LA E + ++ Q Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250 Query: 292 F-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++ G + P L D L + + + + + M Sbjct: 251 TGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRM 310 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +P QT+ SAT + + + Sbjct: 311 LDMGFEPQIRKIVQQMDMPP-------------PGVRQTMLFSATFPREIQRLASDFLSN 357 Query: 411 QVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINER-----VLVTTLTKRM 458 + G + +E + + L+ + + + LV TK+ Sbjct: 358 YIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKG 417 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ L +L +G +H D ER +R + G +LV ++ GLD+P V+ V Sbjct: 418 ADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHV 477 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + IGR R +G A + + +MAK + E + ++ Sbjct: 478 VNFDLPN-----DIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVP 532 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 107/349 (30%), Gaps = 28/349 (8%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEM 296 + + + + + + L+ E ++ EE R Sbjct: 280 LSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC 339 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G G + P L D + + + ++ + + M Sbjct: 340 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 399 Query: 357 RKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + E P QT+ SAT + + + + Sbjct: 400 PQIRRIVEQDTMPPKG--------------VRQTMMFSATFPKEIQILARDFLDEYIFLA 445 Query: 416 TGLL----DPIIEVRPVATQVDD--LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + + I + ++D L ++ + LV TK+ A+ L ++L Sbjct: 446 VGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHE 505 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G +H D +R E + R G+ +LV + GLD+ V V D Sbjct: 506 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP----- 560 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R N G A + ++ ++ K + + +++ Sbjct: 561 SDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEVP 609 >UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE40_9ALVE Length = 695 Score = 242 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 112/359 (31%), Gaps = 31/359 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I + + + + A ++L + L Q + + Sbjct: 252 QTGSGKTGAYLIPAIHNMLADGPPDATSSGDYGRRKAYPITLILSPTRELASQIHEEARK 311 Query: 292 F-----DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 F ++ G + P L D + + + + + Sbjct: 312 FCFNTGIRPVVVYGGADVRTQLRELERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDE 371 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M + + +PS+ D Q+ SAT + + Sbjct: 372 ADRMLDMGFEPQIRRIVEQEDMPSSRD------------GRQSAMFSATFPREIQQLARD 419 Query: 407 DVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + D + G + I+ +++ DL + + LV TKR A Sbjct: 420 FLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYRVL-EEQTEEGLTLVFVETKRKA 478 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +++ L +H D ER E ++ + GE +LV ++ GLD+ V+LV Sbjct: 479 DEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELPILVATDVAARGLDISHVNLVI 538 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + IGR R N G AI + ++ + + + + +++ Sbjct: 539 NYDLPN-----NIDDYVHRIGRTGRAGNLGTAIAFVNEGSKPILRDLWTLLEENKQEIP 592 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 242 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 96/314 (30%), Gaps = 17/314 (5%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 K L N++ + T+ + + G + + G P L Sbjct: 293 LKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSV-CLYGGAPKGPQLRDLE 351 Query: 331 ADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + + L E L + + K + QT Sbjct: 352 RGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQT 411 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--------EVRPVATQVDDLLSEIRQ 441 + +AT + + + + V G D ++ + L +I + Sbjct: 412 LMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILR 471 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++++ TKRM + L L +H D ER ++ + R G +LV Sbjct: 472 SQEPGSKIIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILV 530 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ GLD+ ++ +V D F + IGR R G A + Sbjct: 531 ATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSK 585 Query: 561 MAKAIGETERRREK 574 A + + + Sbjct: 586 YASDLVKILEGANQ 599 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 103/349 (29%), Gaps = 28/349 (8%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEM 296 + + + + + + ++ E ++ EE R Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G G + P L D + + + ++ + + M Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358 Query: 357 RKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + E P T+ SAT + + + + Sbjct: 359 PQIRRIVEQDTMPPKG--------------VRHTMMFSATFPKEIQMLARDFLDEYIFLA 404 Query: 416 TGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + E V + L ++ + LV TK+ A+ L ++L Sbjct: 405 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 464 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G +H D +R E + R G+ +LV + GLD+ V V D Sbjct: 465 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP----- 519 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R N G A + ++ ++ K + + +++ Sbjct: 520 SDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 568 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 107/309 (34%), Gaps = 17/309 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + G + R G P + D + + + + Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI-RGVEICIATPGRLL 257 Query: 345 PQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + R L E L + + K + QT+ SAT Sbjct: 258 DMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRL 317 Query: 404 SGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTL 454 + + D + G LD I+EV A + L +I + + +VL+ T Sbjct: 318 ARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTG 377 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR+A+D+T +L + G +H D ER ++ + R G+ ++V ++ G+D+ Sbjct: 378 TKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKG 437 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 ++ V D F + + IGR R G A Y A+ + + Sbjct: 438 ITHVFNYD-----FPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAK 492 Query: 574 KQQKYNEEH 582 + E Sbjct: 493 QDIDPKLEE 501 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 59/365 (16%), Positives = 112/365 (30%), Gaps = 32/365 (8%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEM 296 +P + +V P + Q + L E ++ EE + Sbjct: 351 VPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPA 410 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G + + P L D + + + + + + + M Sbjct: 411 VLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFE 470 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + +P QT+ SAT E + + + + Sbjct: 471 PQIRRIVEQLNMPP-------------TGQRQTLMFSATFPKQIQELASDFLSNYIFLAV 517 Query: 417 GLLD-------PIIEVRPVATQVDDLLSEIRQRAA-----INERVLVTTLTKRMAEDLTE 464 G + I + LL + + L+ TK+ A+ L E Sbjct: 518 GRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEE 577 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L + V +H D ER E +R R G+ +LV + GLD+P V V D Sbjct: 578 FLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLP 637 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + IGR R N G A + ++ ++ + E +++ E Sbjct: 638 -----SDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDM 692 Query: 584 ITPQG 588 + +G Sbjct: 693 SSDRG 697 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 105/306 (34%), Gaps = 17/306 (5%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ + + ++ + G + + + G P L + + Sbjct: 169 PICLVLAPTRELAQQVQQVAFDYGKSSRIKS-TCVYGGAPKGPQIRDLERGVEICIATPG 227 Query: 342 VTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I + G R L E L + + K + QT+ SAT Sbjct: 228 RLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 287 Query: 401 LEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLV 451 + + + D V G L+ I++V + + L+ + + A E + ++ Sbjct: 288 RQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTII 347 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK+ ++LT + G +H D ER ++ + R G+ +L+ ++ GLD Sbjct: 348 FVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLD 407 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETER 570 + +V V D S + IGR AR+ G A + A+ + Sbjct: 408 VEDVKFVINYDYPN-----SSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLE 462 Query: 571 RREKQQ 576 + Sbjct: 463 EARQAI 468 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 102/659 (15%), Positives = 201/659 (30%), Gaps = 70/659 (10%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + + L GV GSG + A + A +V+ P++ A E++ + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVV 139 P+ + Y P + K S + R++A +L RR ++V Sbjct: 62 LPKGK-----------RRVIYFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 V + + + ID+ ++ RL Y R + G + VRG Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F S +R+ELF + VE L F P+T + + I I P V Sbjct: 171 ILDVFSP-SATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDPA---- 225 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 EL L + + + ++ + E G G+E + Sbjct: 226 -------ELPEILGRLRKAGADAGVDPVV--IRGHVDKIREEGRFPGMEGMLSIVYPEL- 275 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL--PSALDNRP 376 + DY+P L +++ + R + + P +L Sbjct: 276 ----DSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALAENRLSVTPESLYIEW 331 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGD--VVDQVVRPTGLLDPIIEVRPVATQVDD 434 + + + T E + + + D + L Sbjct: 332 SQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTLKGEGKTEALFQ----P 387 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + R + + ++ L L +G +L E+ + Sbjct: 388 LADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKG------FEEVENQ-KP 440 Query: 495 GEFDV-LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G + + L G PE + + + + G R G R + I Sbjct: 441 GIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFGAKRRRS-----AGGTKRAKSQF-ITP 494 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + R E + GI+ + D Sbjct: 495 EELKEGDIVVHLEHGLGRYEG-LVTLKLEGISGDFILISFRD--------------DDRL 539 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL-RELFIA 671 P+ + V + + ++ G Q ++ +E ++ +L +L E +A Sbjct: 540 YLPVDRMEMVEKYIGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLYAERRVA 598 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 68/467 (14%), Positives = 139/467 (29%), Gaps = 42/467 (8%) Query: 213 RVELFDEEVERLSLFD--PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 R + F + E F+ P + + + + P V + I+ Sbjct: 605 RPDHFFNDFEASFPFEETPDQLKAIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFK 664 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q E Y +E+ SRF + + Sbjct: 665 AVTDGKQVAIVVPTTILAEQHVHTFRERF--GNYPITVESLSRFRTK----GEQAKIVKD 718 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L L VV +H + + + +G + + + + Sbjct: 719 LEQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRFGVK--------HKEALKKRRSSVD 770 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINE 447 + ++ATP L S + D + T +D V ++ D + + I++ Sbjct: 771 VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGG 830 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ + E L++ V H ++ + + E D+LV + Sbjct: 831 QIFFIHNNIKTIFKTAENLKKLVPEVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTI 890 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I AD G + Q GR R + Sbjct: 891 VESGLDIPSANTMIINRADMFGLAQI----YQLRGRIGRGEEQAYAYLFVPEEHR----L 942 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++R + + G G + D+ G A ++ V Sbjct: 943 TRDAQKRLAALMEHRDLG---SGFQIAMKDLQIRGAGSALGGSQSG-------HVAAVGY 992 Query: 626 DMSPKALQQKIHELEGLMMQ--HAQNLEFEEAAQIRDQ-LHQLRELF 669 DM K L + + +L+G + + + I D+ + + + Sbjct: 993 DMFLKLLDEAVADLKGQPLTDPLEPEINVTLSTFISDEYVQSIEQRL 1039 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 219/643 (34%), Gaps = 79/643 (12%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 + + L GV I +A + +P +++ N+ A + + ++ ++ +E F Sbjct: 21 SRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELF 80 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG 149 V + + A + R+ +L R VV+A+ + Sbjct: 81 VLDGN-------------LATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPL 127 Query: 150 D-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 P L+ K H VG I + + L + Y R + + G F +RG+++D++P Sbjct: 128 SAPALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPL-DR 186 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 + LR+E F +E++ + FD + + + +P T+ + +V E + +A E+ +L Sbjct: 187 ESPLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLP 246 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 LE + + +G +L DY Sbjct: 247 KEAAASLE--------------------IAQEALANGQLPDDCNRYLDYLLSKSFSLLDY 286 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 LPA GLL+ ++ + + M + + S R +A Sbjct: 287 LPAKGLLLFNDWQLIAESVKNMGAIN-DDYLASQIASKMMTSRQKLRLDFDAVLKADCHH 345 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 +YVS + S G + +P +Q++ L +E+ A + Sbjct: 346 RLYVSL------MAHSMGRLRFGQHLAWDSREPQ----QFFSQMELLKTELDSYAKKGQT 395 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V++ ++R AE+ ++ + +D L+ G +++ Sbjct: 396 VVLQVSSRRQAEEFNRSCHDYDIYLPLAEAD-----------GLKEGRAQLVI--GGYAS 442 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G +P+ LV + + + + + I+T+ A R Y + + Sbjct: 443 GFVLPDSDLVYLTEKELFNQNKRSKKRIKTLENAQRLR-----SYTELKPGDYVVHVNHG 497 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 R E Q + G + + I T KG P + V ++ Sbjct: 498 IGRFEGIQ------TLETDGKKRDYITI---------TYQKGDQLFVPDDQLSLVQKYVA 542 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + Q I++L G + I D L +L A Sbjct: 543 SEGKQPHINKLGGSEWAKTKKRVAARVEDIADDLIELYAKREA 585 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 66/440 (15%), Positives = 121/440 (27%), Gaps = 38/440 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q Q + Sbjct: 621 KADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDR 680 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G S + L + +V +H + + + Sbjct: 681 ------FKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLKDLGLL 734 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L S + D V T Sbjct: 735 IIDEE--------QRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMET 786 Query: 417 GLLDPIIEVRPVATQVD-DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 + V Q+ + ++ +V E+ LE+ Sbjct: 787 PPQNRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEARI 846 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + + +I+ EFD+LV ++ G+DMP V+ + I DAD G + Sbjct: 847 AYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ--- 903 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + + K + E +R + E G G + Sbjct: 904 -LYQLRGRIGRSARLAYAYFLYQPN----KVLTEVGEKRLDAIRDFTELG---AGFKIAM 955 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + D+V D+ + L I E +G N E + Sbjct: 956 RDLSIRGAGNMLGAQQHGF-------IDSVGYDLYSQMLADAIKERQGKKPVKKSNAEVD 1008 Query: 654 ---EAAQIRDQLHQLRELFI 670 EA D + + Sbjct: 1009 LGLEAYIPEDYIADQEQKIE 1028 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 103/677 (15%), Positives = 231/677 (34%), Gaps = 78/677 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTM 61 + + + I ++ D + Q + GV + K A V L+ + + Sbjct: 1 MMHSLTDFISRLPLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKIL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L + A QL +++ + V + S ++ + A + + Sbjct: 61 LLTDTQFRADQLTSDLEALLEDENVF-------------EMQSEESLATETAVASRDADL 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R+ A +A+L + + +VV +S + P+ + + +L + Q + ++L E+ Sbjct: 108 SRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y + G F VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + Sbjct: 168 YNKQTLVANPGEFSVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQ 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 ++ P + ++ PR ++++++ L K E+++LT+ LE Sbjct: 227 ASVSPVSDFLLPRAEFSDGLKQLEQAFVDYLNKL----KGAEKKKLTEFFNPLLEAAKHF 282 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 Y + +S F ++F+YL ++ L+++D+ Q + + Sbjct: 283 SYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITD 335 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV----RPT 416 + LP ++ + + + + Sbjct: 336 RLREFKLLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKI------YLSNLTRGLAGITF 389 Query: 417 GLLDPII--EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 +I +++ Q+ L ++ + VL+ + L L + G Sbjct: 390 TSRTQLITRQMQQYFGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMNFA 449 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 I D+ G + +G L G ++PE +V + + + ++ Sbjct: 450 -------------ITDDILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVP 494 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 QT + K Y + T + R E E +G + Sbjct: 495 RHQTF-----SNAEKITSYTELKTGDYVVHVNHGIGRYEG-LTTLEANGGKQDYITIAY- 547 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 A+ P+ + V + + K++ L + + Sbjct: 548 -------------AQKAKIFVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAK 594 Query: 655 AAQIRDQLHQLRELFIA 671 I D+L L Sbjct: 595 VEDIADELIALYSKREG 611 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 56/419 (13%), Positives = 126/419 (30%), Gaps = 36/419 (8%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I P + + + A Q Sbjct: 641 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 Q +E ++ E LS + L A L +V +H + + Sbjct: 701 QTAIERFSDF-----PEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 755 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + + + + ++ATP L + D Sbjct: 756 DDLGLLIIDEEQRFGVK--------HKEKIKQLRANVDVLTLTATPIPRTLNMALVGARD 807 Query: 411 QVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + I+ + + I + + + + E ++ Sbjct: 808 LSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQRI 867 Query: 470 GE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 V Y+H ++ + +++ D G +DVLV ++ G+D+P + + + ++++ G Sbjct: 868 VPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 927 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + E ++R + + E G Sbjct: 928 LSQ----LYQLRGRIGRSNRLAYAYFTYPGDRQP----TEDAQKRLEAIRDFTELG---S 976 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 G + D+ G K + D+V ++ + LQ+ + + +G + Sbjct: 977 GFKLAMRDLSIRGAGDLLGKQQHGF-------IDSVGYELYQQMLQEAVSQKQGKDKKV 1028 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 116/333 (34%), Gaps = 35/333 (10%) Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQ-RTQFDLEMMNELGYCSGIENYSRFLSG 315 Q ++ +A E + +++ + + G G + Sbjct: 346 QQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 405 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D+L A + +++ + + M + + Sbjct: 406 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLD-----------------MGFEPQ 448 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K QT+ SAT + + + + + G L+ +++V Sbjct: 449 IRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCD 508 Query: 428 ---VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 ++ LLS+I + ++++ TKR ++L ++ G R +H D E Sbjct: 509 EFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSE 568 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++R+ R G+ ++LV ++ GLD+ + V D ++ I IGR R Sbjct: 569 RDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYP-----QNSEDYIHRIGRTGR 623 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 + G + + K AKA+ + R ++ Sbjct: 624 SNTKGTSFAFFTKNNAKQAKALVDVLREANQEI 656 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 56/399 (14%), Positives = 113/399 (28%), Gaps = 44/399 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-----TPRERIVQ 258 P A+ + L ++ + F + + Sbjct: 290 PTPVQKYAIPIILSGRDLMSCA------QTGSGKTAAFLVPILNRMLEQGASMNPASNRP 343 Query: 259 AMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L E ++ EE + + G + + Sbjct: 344 YQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHL 403 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D + + + + + + + M + + +P Sbjct: 404 IVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRHIIENRDMPP------- 456 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVAT 430 QT+ SAT E + + + + G + I Sbjct: 457 ------TGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNENE 510 Query: 431 QVDDLLSEIRQRAA------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + LL + + + L+ TK+ A+ L E+L ++ V +H D E Sbjct: 511 KRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQRE 570 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + ++ R G+ +LV + GLD+P V V D + IGR R Sbjct: 571 REDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLP-----SDVEEYVHRIGRTGR 625 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 N G A + ++ ++ + E ++ E Sbjct: 626 MGNLGIATSFFNEKNRNIVSDLVELLIETNQELPSFLEE 664 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 89/660 (13%), Positives = 199/660 (30%), Gaps = 71/660 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L + + GV + ++ +P +V+ + A Sbjct: 4 LTKIYEDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L + + + PS + S++++ E R++ + Sbjct: 64 RNLTEYLNDIEENI--------------CEFFPSRELNFYNAKSLDDNAEDQRVNVLFKL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V + A+ K + +I+ + +L L+Y R D Sbjct: 110 LNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIES 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG ++DIFP S +R+ELFD+E++ + F+ T + + I + Sbjct: 170 KGQFAIRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSEL 228 Query: 250 VTPRERIVQAMEEIKEEL----AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + I++ L +N + ++L + + DL Sbjct: 229 IIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYIRSDL----------- 277 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 E +S + T+FDY D ++++++ + LVE G Sbjct: 278 -EYEIDLVSCFLTKKDYDTVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKG 336 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 L + + + + +T + + Sbjct: 337 EVLSKHEQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLKTLEAPN------- 389 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +D L+ I+ + + +V L + +G E Sbjct: 390 --FNKNIDSLVENIKSNSLRGFKQIVFAANVERKNMLKDLFLTNGIPTL---------EA 438 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + +++ VL+ L G ++ + + I + G + R Sbjct: 439 EDYNANIKS--SQVLITQKNLPNGFEIKDPKYLIITYKEIFGREKQLRK----------- 485 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K D + S +Y I G+ K + I + Sbjct: 486 RKKKKSTGQDIVNYSDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLM 545 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + NV + +++L G A+ + ++ D L +L Sbjct: 546 IPTDQMNLVQKYIGGGNVK--------KPSLNKLSGNDWAKAKQKAKKSVDEMADDLVEL 597 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 136/453 (30%), Gaps = 42/453 (9%) Query: 222 ERLSLFDPLTG-QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + + + + I + P + + I+ A Sbjct: 621 DSFPYEETDSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAF 680 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q E + Y +E SRF+S + + + ++ Sbjct: 681 LVPTTILAQQHFNTIKERFRD--YPIRVEMMSRFVSP----ARQKQIMKDVQRGLVDLLV 734 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + R + + + +SATP Sbjct: 735 GTHRILSKNLKFKDLGLLVIDEE--------QRFGVRHKEKLKSMRENVDVLTLSATPIP 786 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKR 457 L+ + D + D V L+ I + ++ Sbjct: 787 RTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIE 846 Query: 458 MAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L+E + H ++ E ++ D + G +D+L+ ++ GLD+ V Sbjct: 847 DIDQMEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNV 906 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I +ADK G + L Q GR R+ + T K++ E +R Sbjct: 907 NTMIIYNADKMGLSQ----LYQLKGRIGRSDR---TSFAYF-TYEGQKSLTEISEKRLMA 958 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 K E G G + D+ G +++ + D+ K L+Q Sbjct: 959 IKDFTEFG---SGFKIAMRDLELRGAGNLLGESQHG-------HIAKIGYDLYVKLLEQA 1008 Query: 636 IHELEGLMMQHAQNLEFEEAA----QIRDQLHQ 664 + E +G + +N E D + + Sbjct: 1009 VREAKGETISENKNTVIIEIKVNGYIPEDYISE 1041 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 87/525 (16%), Positives = 195/525 (37%), Gaps = 45/525 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + IR + L++ Q + G+TGS + + V +RP + + N Sbjct: 2 KGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + + + P+ + + + + + R+ A Sbjct: 62 HAQKLYDDLLSLMDVDRLFLY-------------PADELISSELSISSPELRGQRVEALD 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L + +V+ V+ + + P L+ + + G ID + ++L + Y + Sbjct: 109 FLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG +IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T Sbjct: 169 NTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + ++ +++++ L E Q L + + DLEM+ Sbjct: 228 EIILDQSYYPDIVKRLEKKMMLTLNELKEQEDK---QALIENLEEDLEMLRSGVKPD--- 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 F P +LFDYLP + +++DE + + R + + + Sbjct: 282 --MFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMET 339 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + K +P+ + + V +++ Sbjct: 340 VRDVQVSHSFKKLLEGNHSPKIYLSLFQ-----KQMASMRVSKTTNI------VYKQMQQ 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q++ L +E+ N V++ AE + + L ++ D+++ + Sbjct: 389 FHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDY---------DMESTILKK 439 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + G ++G + G ++P + I + + + Sbjct: 440 ESDVPKYGMVQFVIGT--FQNGFELPLAKVAIISETELFNKKNQK 482 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 103/682 (15%), Positives = 208/682 (30%), Gaps = 103/682 (15%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + L+ + L +T ++ + P +++ A + E+ F Sbjct: 7 IQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARELLFF 66 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM---------- 130 + V P+ +T + S + RL+ + Sbjct: 67 GAQRGVHILP-----------FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPIS 115 Query: 131 ----LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 L VV+ + +AI L + + +VG ++ L Y Sbjct: 116 IGNELGDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVS 175 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q + G + RG +ID+FP D+ +RVELF +EVE + LFDP + + IP + P Sbjct: 176 QVSEPGEYAARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLP 234 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I +E + +++ G Sbjct: 235 VREVILNADTISCFRTAYREVFGGYAAE-----------------DLIYKEISQNRTYQG 277 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE--SHVTIPQIGGMYRGDRARKETLVE 363 +E Y TLFDYLP L +++ + + + R + Sbjct: 278 MEQYLPLFYPDL-----DTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAY----Q 328 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSAT---PGNYELEKSGGDVVDQVVRPTGLLD 420 G D ++ L ++ +G +D + P + Sbjct: 329 AGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKPALDLDLHPIPPIQ 388 Query: 421 PIIEVRPVATQ---------VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 ++ + Q +D L +I R+ + T E + E L +H Sbjct: 389 EGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERMRELLTDHKV 448 Query: 472 RVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 V S + + + +L+ ++ +G + P +V I + + G Sbjct: 449 SVVDGSSWSALLQADPRQ----------PMLLLGDV-SDGFEHPTRHVVLISEDNVFGVR 497 Query: 530 RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + I E + +HG+ G Sbjct: 498 IRR---------------------RQISRRYLDQLIASFADLNEGDAVVHVDHGVGRFGG 536 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + + A G P+ D V S + +Q + +L G + Sbjct: 537 LVSLEVGQLKNDFLLIIYADGDKLYVPVENLDRVGKHSSGEEVQ--LDKLGGKRWAKTRA 594 Query: 650 LEFEEAAQIRDQLHQLRELFIA 671 ++ ++ ++L ++ A Sbjct: 595 KARKKILEMAEELVAIQAQREA 616 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 121/403 (30%), Gaps = 35/403 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + ++ A + Q + + + GY Sbjct: 661 MDRLVCGDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLA--GYPIK 718 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ SRF + + + + + V+ +H + + +G Sbjct: 719 VDILSRFRTPKEQKAT----IEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFG 774 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IE 424 + + ++ATP L + V D + + D + I Sbjct: 775 VSHKER--------IKNLRATLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIR 826 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDT 482 + I + +V + E + + E RV H + Sbjct: 827 TIITHYDKQQVREAILRELYRGGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRE 886 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 + +++ + F++LV ++ G+D+P + + I ADK G + L Q GR Sbjct: 887 NQLEKVMMEFYRQTFNILVCTTIVENGVDIPTANTIIIDRADKFGLAQ----LHQLRGRV 942 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + +A Y + + + EK+ + E G G D+ G Sbjct: 943 GRSKH-RAYAYM------LVPHLRRLTKHAEKRLEALESLGELGAGFMLATHDLEIRGAG 995 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + V ++ + L++ + L+ Q Sbjct: 996 NILGDEQSG-------QIKEVGFELYNQMLREAVVALQTARAQ 1031 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 238 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 102/349 (29%), Gaps = 19/349 (5%) Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 V + K L N + + T+ + E Sbjct: 183 IALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEA 242 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKET 360 G + + G P L +VV + + Sbjct: 243 VKFGRSSRISS-TCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLV 301 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L E L + + K + QT+ +AT + +V V G +D Sbjct: 302 LDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVD 361 Query: 421 ---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 +E+ + ++ L +I + +VL+ TKRM + L L Sbjct: 362 ELVANSAITQNVELITPSEKLRRL-EQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-F 419 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +H D ER +++ R G +LV ++ GLD+ ++ +V D F Sbjct: 420 GASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYD-----FPTG 474 Query: 532 ERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + IGR R G A + A + + ++ + Sbjct: 475 IEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRD 523 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 238 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 131/421 (31%), Gaps = 20/421 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L + + T+ + E + ++ G+ Sbjct: 54 TGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQ 113 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L + +VV + I + + L E L Sbjct: 114 EYGRQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETI 173 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQV 432 E Q SAT + + + D ++ V + Sbjct: 174 LEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKP 233 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L+ + + V+V TK E++ E L++HG R +H DI R II Sbjct: 234 DALIRVL--EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQF 291 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G D+LV ++ GLD+ V+ V D + + + IGR R G I Sbjct: 292 KQGAIDILVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTI 346 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKG 610 L+ + +I R+R ++ + +H I + + +I + + + Sbjct: 347 LFVTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRI 406 Query: 611 RGKSRPIVEPD--NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + + +V ++ + E M + A + E A + ++ LR Sbjct: 407 VEEYIKEHDVSAVDVAAALALLLHKDMPWRKELNMPKAASAFKEERA-RAGEKGLDLRGR 465 Query: 669 F 669 F Sbjct: 466 F 466 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 237 bits (605), Expect = 8e-61, Method: Composition-based stats. Identities = 51/360 (14%), Positives = 102/360 (28%), Gaps = 31/360 (8%) Query: 232 GQIVSTIPRFTIYPKTHY-----VTPRERIVQAMEEIKEELAARRKVLLENNKL-LEEQR 285 F ++ ++ + +A E EE R Sbjct: 246 QTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESR 305 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + G + P L D + + + + + Sbjct: 306 KFCFGTGIRTNVLYGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILD 365 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M A + + +P +LD QT+ SAT + + Sbjct: 366 EADRMLDMGFAPQIREIVEDSEMPHSLD------------GRQTVMFSATFPREIQQLAK 413 Query: 406 GDVVDQVVRPTGLLDPI------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + + + G + V LL ++ V+ KR A Sbjct: 414 DFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPRLLVKLLLEQGEGLTVV-FVEMKRRA 472 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + + ++L + +H D ER +R R G+ +LV ++ GLD+P ++ V Sbjct: 473 DQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRSGQRPILVATDVAARGLDIPNITHVI 532 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 LD + + IGR R G A + ++ + + + + Sbjct: 533 NLDMPC-----NIDDYVHRIGRTGRAGNTGLATSFVNESNKPILRDLLAALEESGQDAPE 587 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 107/658 (16%), Positives = 209/658 (31%), Gaps = 65/658 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + E ++++E ++D + L G+T K + + + +++A N+ Sbjct: 2 NKLLENINSLEQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A + PS D S++ R+ Sbjct: 61 RAE--------------IYLDSINGIIENKAYLFPSLDINFYNIKSIDNRKLSQRMEVLT 106 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +V+ ++ A+ D + K + + IID + L L Y N Sbjct: 107 KLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +G F RG +ID +P D +R+ELFD+EV+ + LFD + + + I I P T Sbjct: 167 ENKGDFAKRGSIIDFWPVSYD-NPVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + ++ I E+ + E N+ + Q T F E M Sbjct: 226 ELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYKQITAFIEESMFV-------- 277 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + L + + DY+P GL+ D+ I Y +E Sbjct: 278 -SNIDLVNPYRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEV 336 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S R L + +E + I + + + IE Sbjct: 337 FKSFEHARILIDDIYEQIDKFRIINLTSI------LKKSKLFNPRKIIEIK---TIESEN 387 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +VD + + A +++VL+ ++ A L + YL D V ++ Sbjct: 388 FNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLID---------AYLEKDFTQVSKVG 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 I + + + G + ++ + G R R + Sbjct: 439 IGESFE--KIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARK----------KKS 486 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 D I S Y I + K + I G + Sbjct: 487 KNKTSSRDIINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKL--- 543 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + + + K+ L Q A+ + +I D L +L Sbjct: 544 ------FVPVDQMNLISKYIGSRGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVEL 595 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 59/437 (13%), Positives = 131/437 (29%), Gaps = 37/437 (8%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + I+ A + Q Sbjct: 631 RSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPTTILANQHY 690 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ + +S PG + L A + ++ +H + + G Sbjct: 691 ETIKRRFDKFPVNVQV------ISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDVGY 744 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + + + + + +SATP L+ S + D Sbjct: 745 KNLGLLIIDEE--------QRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRD 796 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + I + N +V E L +L E Sbjct: 797 LSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLIEL 856 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H I + + + + GE D+L+ ++ G+D+ V+ + I D+D G Sbjct: 857 VPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMG 916 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R + Y T + I E +R K + + G Sbjct: 917 LGQ----LYQLKGRIGRGNR-SSYAYFTYRTGKILSEISE---KRLKSIRDFSDFG---S 965 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + + D+ K LQ+ + + G ++ Sbjct: 966 GYKIAMKDLELRGAGNLLGESQSG-------HVEAIGYDLYVKFLQEAVEKASGKEVEIK 1018 Query: 648 QNLEFEEAAQIRDQLHQ 664 + ++ + Sbjct: 1019 DKSDVYIDIKVDGYIPN 1035 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 108/351 (30%), Gaps = 13/351 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + T+ + + G +N + L G+ Sbjct: 72 FGIPMAETLNPRDGRVQALVLCPTRELAIQVAQEISKIGRQNDLKAL-PVYGGQSIDRQI 130 Query: 327 DYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +V+ + + R + R L E L + Sbjct: 131 RALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPE 190 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQR 442 QT+ SAT + + + + P+IE + + + + Sbjct: 191 ERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRI 250 Query: 443 A--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TKR ++L LE G LH D+ +R +++ R G+ ++L Sbjct: 251 LDMEEIGSSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELL 310 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+ V+ V D + S + IGR R G AI + Sbjct: 311 IATDVAARGLDVENVTHVINYDIP-----QDPESYVHRIGRTGRAGRKGIAITLINYREY 365 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 K I + R +++ I + + I+ L + K Sbjct: 366 RQLKLIERVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKS 416 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 59/377 (15%), Positives = 114/377 (30%), Gaps = 39/377 (10%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + L L E R R+ G G + Sbjct: 271 VIHINAQPYLQKGDGPIVLILAPTRELALQIKAECDR-FGRSSRITNTCVYGGTQRGPQA 329 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + P L D+L + + +++ + + M L Sbjct: 330 RALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRM-----------------L 372 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGL-------LD 420 + + K QT+ SAT + + V+ G + Sbjct: 373 DMGFEPQVRKIVSQIRPDRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQ 432 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLTKRMAEDLTEYLEEHGERVRY 475 +EV + + LL+ ++ +A + L+ TKR A+D+T L G Sbjct: 433 QYVEVVENNVKPERLLALMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALS 492 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +H D ER ++ + G +++ ++ GLD+ +V V D F + Sbjct: 493 IHGDKKQSERDWVLNQFKTGRSAIMIATDVASRGLDVKDVKYVINYD-----FPGTIEDY 547 Query: 536 IQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + IGR R +G A + +A+ + R + E ++ Sbjct: 548 VHRIGRTGRAGASGVAYSFFSPDKGKLARQLVNCLREANQS--VPEALETIAFANDRSNS 605 Query: 595 DILALGQNIAKTKAKGR 611 G+ K +G Sbjct: 606 GGKGRGKGNYGGKGRGF 622 >UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA Length = 770 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 109/356 (30%), Gaps = 28/356 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + T +T + Q E+ ++ E R R Sbjct: 358 QTGSGKTAAFLLPVLTKLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGT 417 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + P L D++ + + V + + M Sbjct: 418 VVRPVVAYGGTSMNHQIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRML 477 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 + + +PS T+ SAT + + + D Sbjct: 478 DMGFETEIRKLASSPGMPSK-------------SDRHTLMFSATFPDEIQRLAHDFLRED 524 Query: 411 QVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I + LL I A R LV TKR A+ L Sbjct: 525 FLFLTVGRVGGACTDVTQSIIQVDQDDKRAKLLELISDVAETRSRTLVFVETKRGADFLA 584 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + G +H D ER + +RD + +L+ ++ GLD+P+V V D Sbjct: 585 CMLSQEGCPTTSIHGDRLQQEREQALRDFKSAVCPILIATSVAARGLDIPKVEHVINYDM 644 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGD-KITPSMAKAIGETERRREKQQK 577 + + IGR R N G+A + D +A+++ + +++ Sbjct: 645 P-----KEIDEYVHRIGRTGRCGNLGRATTFYDNNKDGELARSLVKILSEAQQEVP 695 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 237 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 41/393 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + P A+ + L ++ + F + + + + Q Sbjct: 209 VKPTPVQRHAIPISLGGRDLMACA------QTGSGKTAAFCFPIISGIMKMQGQSAQRPL 262 Query: 262 E---IKEELAARRKVLLE-NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + LA E + ++ EE R ++ G + Sbjct: 263 RGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGGAPINQQLRELERGVDI 322 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D L + + ++ + + M + + Sbjct: 323 LVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKI-------------VE 369 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVAT 430 + + A QT+ SAT + + + + G + +E + Sbjct: 370 QNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQESD 429 Query: 431 QVDDLLSEIRQRAAINER-----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + L+ + + A + LV TK+ A+ L +L +G +H D ER Sbjct: 430 KRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQER 489 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 + +R R G +LV ++ GLD+P V+ V D + IGR R Sbjct: 490 EQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPN-----DIDDYVHRIGRTGRA 544 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 +G A + ++ S+A A+ + + ++ Sbjct: 545 GKSGLATAFFNEGNASLAMALADLMQESNQEVP 577 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 119/387 (30%), Gaps = 29/387 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + F + T+ V E+ Sbjct: 404 YDSPTPVQ-KFSLPIILADRDLMACAQTGSGKTAAFLLPVLTNLVRTGLASSSFSEKQLP 462 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + ++ E R R ++ G + + P L Sbjct: 463 QAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTNYQLKELQKGCHLLIATPGRL 522 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + ++ + + M + + +P Sbjct: 523 MDFINRGKIGLSSVQYIILDEADRMLDMGFETEIRKLVDSPGMP-------------AKN 569 Query: 386 APQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 T+ SAT + + + + D + G + ++ + + L+ Sbjct: 570 ERHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKRNKLIE 629 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + A R LV TKR A+ L L + G +H D ER E +RD + G+ Sbjct: 630 LLADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGKC 689 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+P+V V D E + IGR R N G+A + D Sbjct: 690 PILVATSVAARGLDIPKVEHVVNYDLPSE-----VDEYVHRIGRTGRCGNLGRATSFYDD 744 Query: 557 I-TPSMAKAIGETERRREKQQKYNEEH 582 S+A+++ + ++ E Sbjct: 745 SANASLARSLVKILADSIQEVPSWLEE 771 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 108/354 (30%), Gaps = 27/354 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + T + + + + ++ + R Sbjct: 397 QTGSGKTAAFLLPVLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGT 456 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G G + P L D + + + ++ + + M Sbjct: 457 MLRPVVLYGGTSVGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRML 516 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + P QT+ SAT + +G + D Sbjct: 517 DMGFGPDIKKIVHELGTPEK-------------TERQTLMFSATFPEEIQKLAGDFLNDY 563 Query: 412 VVRPTGLLD---PIIEVRPV---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + G + + Q L +I + + + LV KR A+ L Y Sbjct: 564 LFLTVGRVGGACSDVTQHFFQVDRQQKRQKLCDILSESGAD-KTLVFVEQKRNADFLASY 622 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L E G +H D ER E +RD + G+ +L+ ++ GLD+P V V D Sbjct: 623 LSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAARGLDIPNVKHVINYDLP- 681 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKI-TPSMAKAIGETERRREKQQK 577 +S + IGR R N GKA + + S+AK + ++ Sbjct: 682 ----QSIDEYVHRIGRTGRCGNLGKATSFFSEDGDGSLAKPLMRILVDAQQNIP 731 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 102/678 (15%), Positives = 206/678 (30%), Gaps = 112/678 (16%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLED-----------GLAHQTLLGVTGSGKTFTIANVIAD 55 + + + Q +++ L + L D +QT+ V + + +A + Sbjct: 1 MVTPLPATFHQLASVQALGKVLADLPGIAALAASLRPGYQTIAPVPAAARPALLAALAYH 60 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 PT+ + + A + +++++ + V F P +D + S Sbjct: 61 RTTPTLYITLSAESALRAADDLRQWLGSDQVWLF-------------PPADALPYEQMSP 107 Query: 116 NEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + RL+ + + V+V SV A+ P + L GM + + Sbjct: 108 GRDVLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETV 167 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L + Y R + G RG ++D++P D++ LR+E FD+E++ L FDP T + Sbjct: 168 VTLLDNGYQRVAMVEEPGELSRRGAILDVWPPG-DELPLRIEWFDDEIDSLRRFDPATQR 226 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + R I P R + + RR+V E Sbjct: 227 SEQRLERADIGPPHEIPFWRRDEALRRIDALDMSQLRREVRDEWAVA------------- 273 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F + TL DYLP ++ + E H+ Sbjct: 274 REQLAGGQRFEGRAFYAPFFYDQTA-----TLLDYLPPQSMVALAEGHLLAQHADE-IDV 327 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD--- 410 A + LP L++ E + ++ S + D Sbjct: 328 QAAGYRDQLLALGELPPDFPRPYLRWSELHLKESAKLV--------VVDLSHNEYPDALP 379 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT-EYLEEH 469 + L Q+ L+ + ++ E V+ T ++L E L + Sbjct: 380 PLSFGVPPL--------YGGQLRRLIDTVVEQVRGGELVVAVTAQAARLQELVGERLAQE 431 Query: 470 GE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R +H L G + ++ L + D++ G Sbjct: 432 TVSGRFVPIHGG--------------------------LEAGFTLADLHLTLLTDSEIFG 465 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + R L + + A I + + T Sbjct: 466 VRQ-RRPLAERRRKTGTTDR--AAFLRTLKPGDYVVHIEHGIAIFDGMIRR------TVS 516 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 + ++ + + G++ P+ + D V + + L + Sbjct: 517 EVEREYLVLRYAGEDKI---------YVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERT 567 Query: 648 QNLEFEEAAQIRDQLHQL 665 + + ++L +L Sbjct: 568 KRKVRAAVQDLAEELLRL 585 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/407 (17%), Positives = 128/407 (31%), Gaps = 35/407 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q + M + Sbjct: 635 PMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFDTFRKRMAA--FPV 692 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF S + + L + ++ +H + + + Sbjct: 693 TVEMLSRFRSP----KEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQRF 748 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + ++ATP L + + D V T D I Sbjct: 749 GVRHKER--------LKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPI 800 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V D L+ E IR+ +V V + + E L R H + Sbjct: 801 KTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLA 860 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ D G +DVLV ++ GLD+P + + I DA G + L Q GR Sbjct: 861 ERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQ----LYQLRGR 916 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R +A Y + A+ + R R + + E G G + D+ G Sbjct: 917 VGRGAT-RAYAYLL---YNAARVMTNDARLRLEAIQEATELG---AGFRIAMRDLEIRGA 969 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + V D+ + L+Q + +L+ + + A+ Sbjct: 970 GNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRKLKQDVDELAE 1009 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 102/304 (33%), Gaps = 17/304 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ E + + +E+ R G L +++ I Sbjct: 190 LVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSG-QIYALKQGVHILIACPGRLI 248 Query: 345 PQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + R L E L + + K E QT+ SAT Sbjct: 249 DLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWSATWPKEVQSL 308 Query: 404 SGGDVVD-QVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + G + I + ++ +L +++ N+R++V Sbjct: 309 ARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFRDNDRIIVFVE 368 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK+ A+ +T+ L G +H D ER ++ D + G+ +L+ ++ GLD+ + Sbjct: 369 TKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGLDIKD 428 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 V V D F + IGR R +G + + +A+ + + R E Sbjct: 429 VKYVVNFD-----FPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKILRESE 483 Query: 574 KQQK 577 + Sbjct: 484 QPVP 487 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 102/309 (33%), Gaps = 12/309 (3%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 L + + T+ + +++ + F G P L ++V Sbjct: 114 KLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVIVAT 173 Query: 340 SHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I G L E L + + QTI SAT Sbjct: 174 PGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTIMCSATWDG 233 Query: 399 YELEKSGGDVVDQVVRPT----GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + ++ + + LL +I + E++++ Sbjct: 234 PVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLDKIVCHKDM-EQIIIFAA 292 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR E L + L+E G + +LH D+ +R I++DLR G+ +LV ++ GLD+P Sbjct: 293 TKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVAARGLDVPA 352 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 +S V D R + IGR R G AI AI R+ Sbjct: 353 LSHVINYDLP-----RQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINRYLDRKM 407 Query: 574 KQQKYNEEH 582 + Sbjct: 408 EASVIEGME 416 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 32/273 (11%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D+L A + + +++ + + M + Sbjct: 263 GVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRML-----------------DMGFE 305 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEV 425 + K E QT+ SAT + + D + G L I++V Sbjct: 306 PQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDV 365 Query: 426 RPVATQVDDLLSEIRQRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + L+ ++ + + L+ TK+ ++LT + +G +H D E Sbjct: 366 CQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNGWPSICIHGDKSQSE 425 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ + R G +LV ++ GLD+ ++ V D I IGR AR Sbjct: 426 RDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPH-----CSEDYIHRIGRTAR 480 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 + G A + AK + + + Sbjct: 481 SNKTGTAYTFFTPGNMKQAKELIAVLKEANQAI 513 >UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoeba RepID=C4LZM8_ENTHI Length = 578 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 66/497 (13%), Positives = 147/497 (29%), Gaps = 67/497 (13%) Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA------IYGLGDPDLYLKMMLHLTV 163 +D+ + + R + E R+ ++ +VS + G P ++ + + Sbjct: 79 YRDSREDPKRLEKRNQWLEETKEEREKLIDVTVSYENLEIEVTGKDLPKDTIETFYDIDL 138 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G +D + + + P + + L ++ Sbjct: 139 GEELD-----HNIFKAGF--------------------YHPMPVQKATIPIVLDKRDLMS 173 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK---EELAARRKVLLENNKL 280 + F + + Q+ + +A E + Sbjct: 174 CA------QTGSGKTAAFLFPIISDILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQ 227 Query: 281 LEEQRLTQRTQ-FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + E+ + + G S + P L + + + Sbjct: 228 IYEEAVRFTEDTPIRSVCVYGGSDSYTQIQEMGKGCDILVATPGRLLYFTEKKIVSLSSV 287 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 ++ + M + + +P QT+ SAT Sbjct: 288 RYLIFDEADRMLDMGFEPQIREICEDNEMPP-------------VGKRQTLMFSATFPKQ 334 Query: 400 ELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D V G + II + + +L + + A ++ ++ Sbjct: 335 IQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEEIKQEAILDVLGEFAGKGQKTVIF 394 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR A+ L YL +HG +V +H D +R ++ + +LV ++ GLD+ Sbjct: 395 VETKRGADILENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVASRGLDI 454 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 P++ +V D E S + +GR R G AI + ++ T ++ + Sbjct: 455 PDIEVVINYDMPNE-----IESYVHRVGRTGRAGKKGTAITFINEKTQNLIPPLVSLLEE 509 Query: 572 REKQQKYNEEHGITPQG 588 ++ E Sbjct: 510 AKQTIPDWLEEKAQEYR 526 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 55/389 (14%), Positives = 121/389 (31%), Gaps = 38/389 (9%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + P A+ + + ++ + F + + A Sbjct: 442 VKPTPIQRHAIPIAMAGRDLMACA------QTGSGKTAAFCFPIICGILRNQLSRGGARL 495 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 L L E ++ + +T ++ G + + Sbjct: 496 ACPTALILSPTRELSCQIHEEAKKFSYKTG-LKVVVAYGGAPISQQFRNLERGVDILVAT 554 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D + + + ++ + + M + + +P Sbjct: 555 PGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPP----------- 603 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDD 434 A QT+ SAT N + + + + G + +E + Sbjct: 604 --PGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYH 661 Query: 435 LLSEIRQRA-----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L+ ++ + LV TKR + L ++L +G +H D +ER + Sbjct: 662 LMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERAL 721 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + + G ++V ++ GLD+P V+ V D ++ + IGR R +G Sbjct: 722 KSFKSGATPIMVATDVAARGLDIPHVAHVINFDLP-----KAIDDYVHRIGRTGRAGKSG 776 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQK 577 A + + S+AK++ E + ++ Sbjct: 777 LATAFFNDGNLSLAKSLVELMQESNQEVP 805 >UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWX2_PHYIN Length = 546 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 112/357 (31%), Gaps = 18/357 (5%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 +I+ ++ ++ A LA + + T+ Sbjct: 168 RILQSLFTKLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPIVLMIAPTRE 227 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMY 351 + G + + G + D L + + I + G Sbjct: 228 LAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIAD-LRRGVEICICTPGRMIDMLSMGKT 286 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R L E L + + K QT+ SAT + + + D Sbjct: 287 NLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALANDFLTDF 346 Query: 412 VVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I+EV + L +R R+++ TKR A++L+ Sbjct: 347 IQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHLRD-IYEGGRIIIFCETKRGADELS 405 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + +H + ER ++R+ + G +LV ++ GLD+ ++ V D Sbjct: 406 RNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVVNFDM 465 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETERRREKQQKY 578 ++ I IGR AR G +I + +A + + E++ Sbjct: 466 P-----KNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLVKIMEEAEQEVPR 517 >UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 Tax=Trypanosoma RepID=Q388E8_9TRYP Length = 660 Score = 235 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 100/356 (28%), Gaps = 30/356 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAM---EEIKEELAARRKVLLENNKLLEEQRLTQ 288 + I + + L L E ++ T Sbjct: 202 QTGSGKTASYLIPAINEILLNISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTY 261 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T ++ G + + + P L D + + + + + Sbjct: 262 HT-PVRCVVVYGGADPRHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEAD 320 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + ++ G + QT+ SAT + + Sbjct: 321 RMLDMGFEPQIRMIVQGPDSDMPRAGQ-----------RQTLLYSATFPVEIQRLAREFM 369 Query: 409 VDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 G + E + LL+ +R+ + VLV KR A+ Sbjct: 370 CRHSFLQVGRVGSTTENITQDVRWIEDPDKRQALLTLLRE--NEGKLVLVFVEKKRDADY 427 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L +L +H D ER E +R + G VLV ++ GLD+P V +V Sbjct: 428 LERFLRNSELACVSIHGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPNVGVVIQY 487 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 D + + IGR R G AI + ++ ++ + + Sbjct: 488 DMP-----SNIDDYVHRIGRTGRAGKVGVAISFFNEKNRNIVDDLIPLLNETNQVI 538 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 107/317 (33%), Gaps = 18/317 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + +L + L + L++ E G S + G T L Sbjct: 449 QPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISN--TCVYGGASKHTQVAALKK 506 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ I + G R L E L + + K QT+ Sbjct: 507 GVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTL 566 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQR 442 SAT + + D + G + I+EV + + +LS + Sbjct: 567 MFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGS- 625 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +E+V+V T++ +DL L+ G + +H + ER ++ + G +++ Sbjct: 626 VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIA 685 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ GLD+ ++ V D F + I IGR AR +G + + Sbjct: 686 TDVASRGLDIKDIKYVVNYD-----FPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARL 740 Query: 562 AKAIGETERRREKQQKY 578 A + + +++ Sbjct: 741 ANELIKVLTEAKQKIPI 757 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 104/661 (15%), Positives = 232/661 (35%), Gaps = 72/661 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 DQ +++ ++G L G++G+ K+ +AN ++ +++ ++ A Sbjct: 3 IIEFFDQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +LY E+ E V F S D + A ++ RL A + Sbjct: 62 NELYDELSTLLGEEKVFQFF-------------SDDNIYAEFALASKDRIAYRLEALNFL 108 Query: 131 LERRD-VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 L+ R +V A+ P+ +L+ L LT G D ++ L++ Y + + Sbjct: 109 LDERATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVM 168 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG+++DI+P +++ +R+E F +EV+ + FD + + ++++ R IYP + Sbjct: 169 TPGEFSMRGDIVDIYPLDAE-NPVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASD 227 Query: 249 YVTPRERIV---QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ +++ E+ L + + + + +E + Sbjct: 228 FILTDNEFDKGAKSLTEMTNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQNHY 287 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 R + +L +Y P + + +D+ ++ + A + Sbjct: 288 YHKDLRKF-AEYFYDKKTSLLNYFPKNVQIFIDDFQKVN-EMNNKLEMELADFILSEKAM 345 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 R + P T + + G L Q + Sbjct: 346 ERGFEGQTYLLDTMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQHS-----------M 394 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + Q++ +E+ + V++ + E L + L E + V+R Sbjct: 395 QQFFGQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDL-------SLQEVDR 443 Query: 486 MEIIRDLRLGEFDVLVGINL-LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 I ++G+ +++ +L L G + + LV + + + G +R +++ I A R Sbjct: 444 ESI----QVGKVNLI---DLQLSNGFNFLDEKLVVMTEQEIFGKMRKKKARKLNITNAER 496 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + KY + G+++ + I Sbjct: 497 -----------LKDYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQ------- 538 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 G S P+ D + + + KI++L + + ++ I D L + Sbjct: 539 --YQNGDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIK 596 Query: 665 L 665 L Sbjct: 597 L 597 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 69/447 (15%), Positives = 138/447 (30%), Gaps = 45/447 (10%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + ++ I P + + ++ A + Q Sbjct: 633 RSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVLAEQHF 692 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 E G + + + + + + L + ++ +H + + Sbjct: 693 NNFTERFINFGVNVEVLSRFQTKTQQT------EILAKLKKGRVDLIIGTHRLLSKDVEF 746 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + L + ++ATP L S + D Sbjct: 747 FDLGLMIIDEEQRFGVKHKERLKEL--------KTQVDVLTLTATPIPRTLHMSMLGIRD 798 Query: 411 QVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + ++ + T + I + + +V E LEE Sbjct: 799 LSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYVYNRVDTIEQKVSQLEEL 858 Query: 470 GERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R ++H + V+ + G++DVLV ++ G+D+P + + I +AD G Sbjct: 859 IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENADMMG 918 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ A Y K + E +R + K E G Sbjct: 919 LSQ----LYQLRGRVGRSNR-VAYAYFM---YRPEKILSEVSEKRLEAIKGFTELG---S 967 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-ELEGLMMQH 646 G + D+ G + D+V D+ + L++ IH +L + Sbjct: 968 GFKIAMRDLSIRGAGNLLGSEQSGF-------IDSVGFDLYSQLLEEAIHTKLGTSKQKR 1020 Query: 647 AQNLE-------FEEAAQIRDQLHQLR 666 N+E F A I D+ ++ Sbjct: 1021 TSNVEISLELDAFIPAYYISDERQKIE 1047 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 131/403 (32%), Gaps = 39/403 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 S ++ + + ++ + F + H Sbjct: 304 SKPSPIQSQAWPILLQGHDMIGIA-QTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLV 362 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 LA E +E + + + G ++ P L Sbjct: 363 LA----PTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLN 418 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + A+ + V +++ + + M + V R Sbjct: 419 DLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD----------------- 461 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSE 438 QTI SAT + + + + G LD II++ + ++ Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +++++ K A+DL+ L G + +H + D ++R + I D++ G Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ +++ V D F + + +GR R G +I + + Sbjct: 582 ILVATDVASRGLDIEDITHVINYD-----FPHNIEEYVHRVGRTGRAGRQGTSISFFTRE 636 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +MAK + E + E+ + +E + K + D A Sbjct: 637 DWAMAKELIEILQEAEQ--EVPDELHNMARRF-KAMKDKRAAE 676 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 102/653 (15%), Positives = 199/653 (30%), Gaps = 67/653 (10%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V+ + + IA + P +++ + A Q+ +++ + P Sbjct: 25 VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDLQTLL----------AHCSGLPV 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMM 158 P +T S + +I RL+ + +VV V + P + Sbjct: 75 IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 VG + A +RL Y Q G F VRG ++D++P +D + LR+EL D Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLD 193 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 EE++ + FDP + + ++ + + P + Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVL-----------------ERVLV 236 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP--PPTLFDYLPADGLLV 336 +L E L R + + SGIE Y G G TLFDYL AD L++ Sbjct: 237 RLRERFDLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA-LDNRPLKFEEFEALAPQTIYVSAT 395 R + LP L P E P+ SA Sbjct: 297 TAPGVSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAE 356 Query: 396 PGNYELEKSGGDVVDQVVRPTGLL--------------DPIIEVRPVATQVDDLLSEIRQ 441 + ++K+ + T + ++ + + LL + Sbjct: 357 HAH--IDKAEVLDEQPLPVATKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLAT 414 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD-VL 500 E + A ++++ E + + + D + + G Sbjct: 415 ADLQPEVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFA 474 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + + L +G + + + + + + +GR Sbjct: 475 ITVAPLEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGR------------------E 516 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 I + E +E+HG+ + G+ + AKG P+ + Sbjct: 517 PEAIIRDLGELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQL 576 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + +H L G A+ E+ + +L +++ A + Sbjct: 577 HLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARA 629 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/437 (13%), Positives = 128/437 (29%), Gaps = 44/437 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ AA + Q + + + Y Sbjct: 671 PMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFAD--YPI 728 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF S + + + V+ +H + + Sbjct: 729 RVEVLSRFKSTKEIKAE----LQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVDEE--- 781 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + + ++ATP L + + D + T L+ + Sbjct: 782 -----QRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 + + LL ++ A ++ + L + R H + Sbjct: 837 QTFITPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMP 896 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D + F+VL+ ++ G+D+P + + I AD+ G + L Q GR Sbjct: 897 ERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ----LHQLRGR 952 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + P +++ +R + +E G G D+ G Sbjct: 953 VGRSHHR---AYAYLVVPDR-RSMTADAEKRLEAIASMDELG---AGFTLATHDLEIRGA 1005 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE---------GLMMQHAQNLEF 652 + + + V + + L++ + ++ G + A+ Sbjct: 1006 GELLGEDQSG-------QMAEVGFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLH 1058 Query: 653 EEAAQIRDQLHQLRELF 669 D L + Sbjct: 1059 IPTLIPEDYLPDVHTRL 1075 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 103/357 (28%), Gaps = 30/357 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENN-KLLEEQRLTQ 288 F I + + K+E A E ++ +E R Sbjct: 256 QTGSGKTAAFLIPLLSMMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFS 315 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G + P L D L + + ++ + + Sbjct: 316 YRSLVRPCVVYGGRDIRGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEAD 375 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + + +P QT+ SAT + + Sbjct: 376 RMLDMGFEPQIRKIVEQTNMPP-------------PGQRQTLMFSATFPREIQMLASDFL 422 Query: 409 VDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + G + I + D LL + + +LV TKR A+ Sbjct: 423 KDYLFLRVGKVGSTSQNITQRIVYVDENEKRDHLLDILTD-IDSDSLILVFVETKRGADA 481 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L +L G V +H D +R ++ R G +LV + GLD+P V V Sbjct: 482 LEGFLHTEGSCVASIHGDRSQSDRELALQSFREGSTPILVATRVAARGLDIPNVKFVINY 541 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D + IGR R N G+AI + ++AK + + + Sbjct: 542 DLPT-----DIEEYVHRIGRTGRVGNLGEAISFYTDKNNNVAKELVDILLEANQIVP 593 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 101/656 (15%), Positives = 210/656 (32%), Gaps = 70/656 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S F ++ R+LE+ + ++G++ K + + P +VL ++ Sbjct: 2 SIFHEILNKLPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEA 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L + + A P+ D +V+ E +RL+ Sbjct: 62 NAKKLSDDYNQMAGGE-------------LSAVYPAKDFTFRPIETVSREYEYIRLNVLS 108 Query: 129 AMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ R+ VV A + +A+ P L+ + G + ++ LA Y R Q Sbjct: 109 RIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + VRG ++D FP + +RVE + +E++ +S F+ + + + + I P T Sbjct: 169 DGSAQYSVRGGIVDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ ++ + + D++ ++ S I+ Sbjct: 228 EIIFSSPEQLR---------EGINGLIRSLGSSPQADAAKLKLSNDIKRIDGGLDLSNID 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y + P TLFDY + LL V E + + L+E G Sbjct: 279 KYIP-----LAYDRPATLFDYFES-PLLFVSEWSDLKESARAYEFQYQEDLKILLEEGEL 332 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 F + A + I T + D+ + + + + Sbjct: 333 CKG-----LDSFVKPFASVSEQIAQGKTVFFDTFAHANHDLRLKELITVNAM----QTSS 383 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + + L ++ A + V++ T T++ A+ L LE+ G + Sbjct: 384 WSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATV----------V 433 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 +L G VL +L G + P + I A + + + R Sbjct: 434 PTGELTPGVVYVLA--GMLSSGFEYPAAKVALITHARIQNLSKRK---------VKRRKG 482 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + D + E N QG++K + I G ++ Sbjct: 483 EEIRSLSDINVGDFVVHVSHGIGVFEGIANLN------LQGVSKDYIKIKYKGSDVLYVP 536 Query: 608 AKGRGKSRPIVEPDNVP----MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + P ++ + ++ + + A L A + + Sbjct: 537 VTQLDMVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADELIRLYAERAK 592 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 70/462 (15%), Positives = 133/462 (28%), Gaps = 43/462 (9%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ E D L + P + + ++ Sbjct: 608 FEDHFEYEETEDQLRCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCVLDSKQC 667 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q Q L + + IE SRF + + + L + + Sbjct: 668 AILCPTTILAWQHYQTALARI--GNFPVNIELLSRFRTP----KEQKQVLQKLRTGQVDI 721 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + A + +G + +SATP Sbjct: 722 IIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHKERFKE--------MFRGVDVLTLSATP 773 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 L + + D V D I+ + + I++ + +V Sbjct: 774 IPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDGQVYYIHNR 833 Query: 456 KRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + + R H + E I + L E D+LV ++ G+D+ Sbjct: 834 VESIQSCAAQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVS 893 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DAD G + L Q GR R+ + + T K + E +R Sbjct: 894 NCNTLIIEDADNMGLSQ----LYQLRGRVGRSKRRASAYF----TFRRGKVLTEIASKRL 945 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + + G G + D+ G I + G + V DM + L Sbjct: 946 SAIREFTKFG---SGFRIALRDLEIRGAGSILGERQHG--------HMEAVGYDMYLRLL 994 Query: 633 QQKIHELEG-----LMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + E +G + + +L E A D + L + Sbjct: 995 SDAVSEKQGVKPPTKVEECLIDLPME-AHIPEDYIENLAQRL 1035 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 116/363 (31%), Gaps = 20/363 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T P + + + + LL L Sbjct: 157 FDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLIL 216 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP- 345 + +++ E+ G + R + G P L + + I Sbjct: 217 APTRELAVQIQAEISKF-GKSSRIRN-TCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDM 274 Query: 346 -QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + G R L E L + + K QT SAT + + Sbjct: 275 LEAGRT-NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLA 333 Query: 405 GGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLT 455 + D + G + I+EV + D ++ + + + L+ T T Sbjct: 334 SDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLIFTGT 393 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR+A+++T +L + G +H D ER ++ + + G+ ++V ++ G+D+ ++ Sbjct: 394 KRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDI 453 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 + V D + + IGR R G AI + A+ + ++ Sbjct: 454 THVLNYDYPN-----NSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQ 508 Query: 575 QQK 577 Q Sbjct: 509 QID 511 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 99/315 (31%), Gaps = 18/315 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + LE L + +++ E G + G P L Sbjct: 316 QPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRS--TCIYGGAPKGPQIRDLRR 373 Query: 332 DGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ I + G + R L E L + + K QT+ Sbjct: 374 GVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTL 433 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQR 442 Y SAT + + + G D IIEV + L + Sbjct: 434 YWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDL 493 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 R+L+ TK+ + +T L G +H D ER ++ + + G+ ++ Sbjct: 494 MD-GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAA 552 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ GLD+ ++ V D F + I IGR R +G A + Sbjct: 553 TDVAARGLDVKDIKCVINFD-----FPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKF 607 Query: 562 AKAIGETERRREKQQ 576 ++ + + R + Sbjct: 608 SRNLVKILREAGQVV 622 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 101/658 (15%), Positives = 222/658 (33%), Gaps = 70/658 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + I++++ GL+D + + +T K + L + + N Sbjct: 2 NKLIEQLINVDQIKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 + + ++ + + P DT S+++ RL Sbjct: 61 RSEKFLQDINQISAKAK---------------LYPDLDTNFYNIKSIDDKKINQRLECLI 105 Query: 129 AMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ + + V + +AI L D + K + + IID + L+ L Y D Sbjct: 106 SLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F RG +IDI+P +D +R+ELFD+EV+ + +FD T + + I I P Sbjct: 166 EERGDFAKRGSIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPAN 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + ++ I ++ + ++ K L + + + +++ Y + + Sbjct: 225 ELLYDSDDYKKVIKAISNDIDKKEVTNTKDQK------LVDKYKQIISFLDQKMYVANKD 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + + + DYLPA + + D+ + +E G Sbjct: 279 LINAYRTENYS-----SFIDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENGEV 333 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S + E ++ ++ ++I + S ++D Sbjct: 334 FGSFANYLLDSSEIYKNISEKSIINFTSILKRTKLFSPRKIIDLKTIEAEN--------- 384 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ + A +++V V +K E+L + +H + E Sbjct: 385 FNKDIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF---------EE 435 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 D + +++ EG + +V L + G S++ N Sbjct: 436 NSTDF--DKTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKK------------NN 481 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K + + I S + Y I + K + I G + Sbjct: 482 RKKVSSKNIINYSDLEIGDYVVHENNGIGIYKGLTKIERNDVEKDFILIEYRGNDKL--- 538 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V + + + K+ L L Q ++ + +I D L +L Sbjct: 539 ------YIPVDQMNLVSKYIGNRGEKPKLSALGSLQWQKSKQRAKKAVDEIADDLVKL 590 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/437 (12%), Positives = 128/437 (29%), Gaps = 37/437 (8%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + ++ A + Q Sbjct: 626 RSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILANQHY 685 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 +E + + + + + + + + +V +H + Sbjct: 686 HTMVERFKDFPITCAMLSRFNTKAKD------DKILKDIKSGKIDIVVGTHRLLSDDVKF 739 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + + +SATP L+ S + D Sbjct: 740 NKLGLLIIDEEQRFGVKHKEKFKKFKASI--------DVLTLSATPIPRTLQMSLSGIRD 791 Query: 411 QVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + + I + N +V E L +++ Sbjct: 792 LSTLDDPPEERLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIEKLFLKIKDL 851 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H + + I+ D G+ D+L+ ++ G+D+ V+ + I D+D G Sbjct: 852 VPEASIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMG 911 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R + Y + K + E +R K + + G Sbjct: 912 LSQ----LYQLKGRIGRGYR-SSYAYFTYRSG---KILTEIGEKRLKSIRDFSDFG---S 960 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + V D+ K LQ+ + + G ++ Sbjct: 961 GYKIAMKDLELRGAGNLLGESQSG-------HVEAVGYDLYVKFLQEAVEKASGKEVKIK 1013 Query: 648 QNLEFEEAAQIRDQLHQ 664 + +I + Sbjct: 1014 LENQTFIDIKIDAYIPN 1030 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 88/662 (13%), Positives = 208/662 (31%), Gaps = 66/662 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L+D + + G T + L + +++A N+ A Sbjct: 4 LVDIINNLRPFEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 + Y ++ P P D F+ S + + RL + Sbjct: 64 RKYYEDLFNISP--------------LRVLLYPEKDIFLYDRDSKSRDNLKTRLGTISKI 109 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V ++ A+ D++LK L L ID +++ +L ++ Y R Q Sbjct: 110 LTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEG 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI + R+ELFD E++ + F+ + + + I I+P Sbjct: 170 MGQFSIRGNIIDIATFSDN---YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + A ++I+ E+ + RL ++ + E Y + Sbjct: 227 LISEDDRLNAAKKIENEI------NKTKLSGERKDRLFEKFSLYKNRLVEDEYIQNPDLI 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 FL+ + D++ D + +++E + + + + ++ +G LP Sbjct: 281 IPFLNEDKLSG----IIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEALP 336 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 S + + L + + E +V+ ++ Sbjct: 337 SHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKSI---------TNYR 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ ++ + +V++ + + A+ L +L E V + + + Sbjct: 388 SKIKLFREDLDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF---------KEDRN 438 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + + +V + G + +V I A+ G + Sbjct: 439 TEFAN---NFVVTTGSVNAGCEFALSKIVIINYAEIYG--------------TYKEKKKP 481 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + KY + G+ + V I G + + Sbjct: 482 KRKKEKILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIE 541 Query: 610 GRGKSRPI---VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + ++ + + + + A +L AA+ + Sbjct: 542 SLDLIYKYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFS 601 Query: 667 EL 668 + Sbjct: 602 KD 603 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 138/441 (31%), Gaps = 44/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 +P + + ++ A + Q +E Sbjct: 630 KKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTILAQQHYNIMVER 689 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + GI + R + + L A + +V +H + + Sbjct: 690 FKDFPVEVGILSRFRTK------KEQKETIEKLKAGIVDIVVGTHRLLSKDVVFKDLGLL 743 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G R L T+ +SATP L+ S + D V Sbjct: 744 IIDEEQRFGVRHKEKLKMLKENI--------DTLTLSATPIPRTLQMSMIGIRDMSVIEE 795 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + V ++ I + +V E + L E V + Sbjct: 796 PPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEVSF 855 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + + ++ + + + G+ DVL+ ++ G+D+ + + I D+++ G + Sbjct: 856 VMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQ--- 912 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A Y +I E ++R K K E G G + Sbjct: 913 -LYQLRGRIGRSSR-VAYAYFT---YEKDVSISEIAQKRLKTIKEFTEFG---SGFKIAL 964 Query: 594 VDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQ 648 D+ G I +K G DN+ D+ K L Q +++L+G ++ Sbjct: 965 RDLEIRGSGSILGSKQHG--------HIDNIGYDLYMKYLTQAVNKLKGIETRETIETVI 1016 Query: 649 NLEF---EEAAQIRDQLHQLR 666 +L+ I D+ +L Sbjct: 1017 DLKIDSYIPKTYIEDERLRLE 1037 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 36/357 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + ++ + + + L E ++ Sbjct: 1058 QTGSGKTAAFLLPILNHIL---DKGYELEIGKPQAIIMSPTRELAVQIFNEARK-FAHNS 1113 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + G +N S P L D++ + D V + + M Sbjct: 1114 YLKITIVYGGTSVKYQNESITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRML 1173 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT +G + D Sbjct: 1174 DMGFSESMRKIITHPTMR---------------KEHQTLMFSATFPEEIQRMAGEFLRDY 1218 Query: 412 VVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V G++ I + L+ +R A +V TKR A+ L Sbjct: 1219 VFVTIGVIGGACSDVTQTIYEVDKFNKRAKLMEILRDGAD---GTIVFVETKRGADFLAS 1275 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + E +H D +R + +R+ + G+ VL+ ++ GLD+ VS V D Sbjct: 1276 FFSETEFPTTSIHGDRLQSQREQALREFKSGKMKVLIATSVASRGLDIKNVSHVINYDMP 1335 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETERRREKQQKYN 579 + + IGR R NG+A + D ++A + + ++ Sbjct: 1336 -----STIDDYVHRIGRTGRVGNNGRATSFFDSDKDRALAGDLVKILEGSGQEVPDF 1387 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 50/363 (13%), Positives = 101/363 (27%), Gaps = 36/363 (9%) Query: 232 GQIVSTIPRFTIYPKTHYV-----TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F + H + + A E + ++ Sbjct: 184 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEAT 243 Query: 287 TQRTQFDLE--MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + +++ ++ + P L D + + + ++ + Sbjct: 244 KFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVL 303 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + M + + P A T SAT + Sbjct: 304 DEADRMLDMGFEPQIRKIVGQGMPPK--------------TARTTAMFSATFPKEIQVLA 349 Query: 405 GGDVVD-QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + D + G ++ + + +L+ + + N VLV TK Sbjct: 350 KDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSEN-LVLVFVETK 408 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 R A +L +L R +H D+ +ER + R G+ +LV + GLD+P V Sbjct: 409 RGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVR 468 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 V D + IGR R N G A + + + + + ++ Sbjct: 469 HVINYDLP-----GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQE 523 Query: 576 QKY 578 Sbjct: 524 VPE 526 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 95/311 (30%), Gaps = 16/311 (5%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 R + N+ + + T+ + G SR + G D+L Sbjct: 61 HRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLV-GGTDMRRQIDFL 119 Query: 330 PADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 LV+ I + L E L + Q Sbjct: 120 RRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQ 179 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQ 441 T+ +AT + D V+ +D + Q LL I Sbjct: 180 TLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILT 239 Query: 442 R-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + L+ T TKR AEDL L G LH D +R ++ R G+ +L Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ V+ V D +S + IGR R G+AI + Sbjct: 300 VATDVAARGLDIDTVTCVINYDLP-----QSPEDYVHRIGRTGRAGRSGRAISFCHPADR 354 Query: 560 SMAKAIGETER 570 ++ + I Sbjct: 355 NLLRDIERLLG 365 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 103/322 (31%), Gaps = 13/322 (4%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + T+ ++E Y G R L G+ L ++V Sbjct: 72 QALVVAPTRELAIQVSEELYKIGAVKRVRVL-PIYGGQDIERQIRALKKHPHVIVGTPGR 130 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 I I R + L E L QT+ SAT + Sbjct: 131 IIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIR 190 Query: 402 EKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTK 456 + + + + + P I+ + + + I E +V TK Sbjct: 191 RIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTK 250 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 R ++L E L G +H D+ +R+ ++R + G ++LV ++ GLD+ V+ Sbjct: 251 RRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVT 310 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 V D + S + IGR R G A+ + I T +R+ ++ Sbjct: 311 HVYNFDIP-----QDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMER 365 Query: 576 QKYNEEHGITPQGLNKKVVDIL 597 K + +L Sbjct: 366 MKPPTLDEALEGQQRIAIEKLL 387 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 101/335 (30%), Gaps = 33/335 (9%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEE-QRLTQRTQFDLEMMNELGYCSGIENY 309 + +A E + +++ R + G + Sbjct: 160 LIHISNQPRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQAD 219 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P L D+L + + +++ + + M Sbjct: 220 DLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLD----------------- 262 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------P 421 + + K Q + SAT + + + + + G L+ Sbjct: 263 MGFEPQIRKIISQIRPDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQ 322 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 IIE + L + + + + + ++ TKR + +T ++ +G R +H D Sbjct: 323 IIECCEEYEKETRLFKLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDK 382 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R ++ R +LV ++ GLD+ +V V D F + I IG Sbjct: 383 TQKDRDYVLNTFRRLRSGILVATDVASRGLDVDDVKYVINFD-----FPNNTEDYIHRIG 437 Query: 541 RAARN-VNGKAILYGDKITPSMAKAIGETERRREK 574 R R+ G + + + A + R + Sbjct: 438 RTGRSTNKGTSYTFFTPANGAKAGDLIGVLREANQ 472 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 209/648 (32%), Gaps = 74/648 (11%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D TL G+ GS A + + P+ L + ++ F + Sbjct: 11 DKKKAITLSGLRGSSTALLAAQLAK--NSSCCCIVPDDHLIPIVVQNLQLFSEK------ 62 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL 148 PS + S ++ + RL++ ++V S+ A+ Sbjct: 63 --------TILSYPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114 Query: 149 GDPDLYLKMMLHL-TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 P L + L G D+ ++ L L Y + G F VRG +IDI+P Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174 Query: 208 D-------DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + LR++ F + VE L FDP++ + + + P ++ Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSAKKSLQ 234 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 E + + + TQ LE +N +GIE++ G+ Sbjct: 235 EIGTAL----------QTRADKYSWNEELTQTMLEKINTGQGIAGIESFLPLFFP---GK 281 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG--FRLPSALDNRPLK 378 +LFD+L D +V+ +S + Y+ + G P + P + Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRIEQNYLEVQGAGTPALPPKEIFLSPEE 341 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDDLLS 437 +E + Q E + + GLL I R + L+ Sbjct: 342 IKEKLSSFRQVRLS---DIVSEQDNATSYNTQ----SHGLLKQEIARRRAKEGILVPLIE 394 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 IRQ R+++ +++ ++L E LE H + + S + + + R + Sbjct: 395 RIRQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK-----RAEQR 449 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 ++L+ + L EG +PE I +++ G + +G K Sbjct: 450 EILLCDHPLSEGFSLPEQGWDIISESELFGQM--------RLG-------------SKKS 488 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 E E + +HG+ + ++ P+ Sbjct: 489 KSKKWAEPIEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDDKLYVPV 548 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + +I +L ++ EE ++ +L ++ Sbjct: 549 DRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEI 596 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 69/470 (14%), Positives = 136/470 (28%), Gaps = 49/470 (10%) Query: 220 EVERLSLFDPLTGQ--IVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 E+E FD GQ ++++ P V + I+ Sbjct: 617 ELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEVAIRGAFKVVEDGAQ 676 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + Q + E + L+ + + L A + Sbjct: 677 AAILVPTTVLAEQHLKTFRERLQNFPL------RIECLNRFRTAKEQREIVKDLAAGKID 730 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 +V +H + + + +G + ++AT Sbjct: 731 IVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKER--------LRKMRAEVDILTLTAT 782 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTL 454 P L+ S + D V + VA D ++ I + + Sbjct: 783 PIPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISRELRRKGQTFFVHN 842 Query: 455 TKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + + +E+ H +DT E I+ E DVLV ++ GLD+ Sbjct: 843 RVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIESGLDI 902 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P + + I AD G + Q GR R+ + + PS +I + R R Sbjct: 903 PSANTMIINRADNLGLAE----MYQLRGRVGRSSTQ---SFAYLLVPS-LDSISKDSRER 954 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + E G G + D+ G ++ + D+ L Sbjct: 955 LRALMECNELG---GGFKLAMNDLQIRGGGNLLGISQSGN-------IAAIGYDLYLDLL 1004 Query: 633 QQKIHELEGLMMQHAQ-----NLEFE-----EAAQIRDQLHQLRELFIAA 672 Q+ + +L+ + + +L+ E A + + + + +I Sbjct: 1005 QKTVADLKAQKLSQEEQGIYDDLDPEINLQHSAFIPSNYITDIDQRYIVY 1054 >UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME Length = 630 Score = 232 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 44/369 (11%), Positives = 99/369 (26%), Gaps = 29/369 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + +V + ++ ++ ++ Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + P L D++ + + + + M Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRML 360 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT+ SAT + + + + Sbjct: 361 DMGFLPSIEKMVDHETM-------------VPLGERQTLMFSATFPDEVQHLARRFLNNY 407 Query: 412 VVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDL 462 + G ++ + D L + + LV K+ A+ + Sbjct: 408 LFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFI 467 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 +L E+ +H D +R E + D + G +LV + GLD+ VS V D Sbjct: 468 AVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYD 527 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK-AIGETERRREKQQKYNE 580 + + IGR R G+A + D + + + ++ + Sbjct: 528 LP-----KGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSVPDWM 582 Query: 581 EHGITPQGL 589 G + Sbjct: 583 MGGNANRNF 591 >UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax=Brugia malayi RepID=A8P4I3_BRUMA Length = 754 Score = 232 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 100/349 (28%), Gaps = 26/349 (7%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 I + + L L E ++ RT ++ Sbjct: 348 INNVLQAGPEALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALL 407 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 + L P L D + + + + + + M Sbjct: 408 YGGRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEP 467 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPT 416 + + ++P T SAT + + + V Sbjct: 468 QIRQIVDLSKMPPKG-------------QRVTAMFSATFPKEIQVLAQDFLMPNYVFLAV 514 Query: 417 GLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G + E V + L ++ + LV TKR A DL YL++ G Sbjct: 515 GRVGSTSENIMQKIVWVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDG 574 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H D+ +R + + R G +LV + GLD+P V V D Sbjct: 575 YNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLP-----S 629 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R N G A + + ++A+ + E ++ Sbjct: 630 DIDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAELVVEANQELPE 678 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 232 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 58/352 (16%), Positives = 112/352 (31%), Gaps = 20/352 (5%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ +E + E G R + G P + + + Sbjct: 242 PICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQAS-IRNGVEICIACPG 300 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I + R L E L + + K QT+ SAT Sbjct: 301 RLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWSATWPKEV 360 Query: 401 LEKSGGDVVD-QVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRA-AINERV 449 + + + + G +D + V + + L + Q +V Sbjct: 361 QKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMFLGQVMVESAPKV 420 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 L+ TKR A+ LT+ L G +H D ER ++ + R G +++ ++ G Sbjct: 421 LIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIATDVAARG 480 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 LD+ +++ V D F I IGR R G ++ + MA + + Sbjct: 481 LDIKDINFVINFD-----FPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLIKV 535 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + +++ E ++PQ + N G ++ ++ Sbjct: 536 LKEAKQRVP-PELFKLSPQNKRMHPRNTGFRRNNPNSLPLGGSNRAYRDLQR 586 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 232 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 111/361 (30%), Gaps = 21/361 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + +++ ++ LT + +++ EL S + + G+ Sbjct: 50 TGKTAAFGIPLLEKVTSDRQVQSLILTPTRELAIQVAGELQKLSKFKR--SQILPIYGGQ 107 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + + + L E L K Sbjct: 108 SIGHQIKALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKI 167 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQV 432 + QT+ SAT + S + + ++ + ++ Sbjct: 168 LQQVNTNRQTMLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKL 227 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L I ++ TK+ +LTE L+ G LH D+ +R +++ Sbjct: 228 DSLCRVIDSETIDLG--IIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKF 285 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R + L+ ++ G+D+ VS V D + S + IGR R G A+ Sbjct: 286 RDSSIEFLIATDVAARGIDVENVSHVINYDIP-----QDPESYVHRIGRTGRAGREGVAV 340 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG---LNKKVVDILALGQNIAKTKA 608 ++I + Q+ + + +++D++ ++ A Sbjct: 341 TLVTPREMKHLRSIEAEIKMTIPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYD 400 Query: 609 K 609 Sbjct: 401 D 401 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 232 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 104/363 (28%), Gaps = 20/363 (5%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + + A + E + + + Sbjct: 100 VSSQTGSGKTAAFMLPAIQRI-----SEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLT 154 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ + E G + G P P L ++V + I Sbjct: 155 PTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQLAALAKMPDILVATPGRLLDHID 214 Query: 349 -GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 G + E L + QT+ SAT + + Sbjct: 215 AGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNATPATRQTLMFSATLDARIAQLASRQ 274 Query: 408 VVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + D ++ + + + LL + + A + ++ +V T TKR A+ Sbjct: 275 LRDPQRIEIAAARADQSHIEQRLHFTDDMSHKERLLDHLLRDATL-KQAIVFTATKRDAD 333 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L E L + G LH D+ R + LR G VLV ++ G+D+P+++ V Sbjct: 334 SLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNLRVLVATDVAARGIDVPDITHVVN 393 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + + IGR R G AI + K I +R Sbjct: 394 FDLP-----KQAEDYVHRIGRTGRAGRSGTAINLVNHNDMFQWKRIERFTNQRIDASVIE 448 Query: 580 EEH 582 Sbjct: 449 GLE 451 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 61/395 (15%), Positives = 113/395 (28%), Gaps = 14/395 (3%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE--RIVQAMEEIKEELAARRKVL 274 F + +FD + + + + + Q A Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + + T+ + E + + G+P L Sbjct: 193 LNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV I + R L E L + E Q S Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--INER 448 AT + S + IE + + L + + + Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +++ TK E+L E L G ++ DI +R + L+ G D+LV ++ Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ ++ V D R S + IGR R G+A+L+ M K+I Sbjct: 433 GLDVERITHVFNYDIP-----RDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIER 487 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + R + + + K ++ ++ Sbjct: 488 ATKSRLNEIELPSVDQVNEARKAKFNRELTKNLED 522 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 121/400 (30%), Gaps = 25/400 (6%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A E + L + ++ +E+ + + R + G P Sbjct: 62 AVELIDTEELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDI-YGGAPMDRQIM 120 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +VV + + + D + L E L + Sbjct: 121 RLKRGANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDE 180 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVA---TQVDDLLSEIR 440 QTI SAT L + D + IE + + D L I Sbjct: 181 RQTILFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIIL 240 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q ++ TKRM +++T +L+ G LH D+ +R +++ + G +L Sbjct: 241 QYHDPALSII-FCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKIL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ V V D +++ + IGR R GKA+ Sbjct: 300 VATDVAARGIDVNNVDYVINYDVP-----QNQEYYVHRIGRTGRAGKEGKAVTICSG--R 352 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + R + K P G + + + + + A V Sbjct: 353 RQVDELYHIVRMTKSTIKR----ESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVA 408 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + V +P I + M +F E Q R Sbjct: 409 EELVQKGYNP----TTIAAVALEMAFGRPKTDFPEIKQFR 444 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 98/338 (28%), Gaps = 12/338 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+ ++ + + T+ + + + G+ Sbjct: 202 TGKTAAFALPILSRLDRSQKKPQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQ 261 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV I + + L E L + Sbjct: 262 SYGIQLSGLRRGAHIVVGTPGRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERI 321 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLL 436 QT SAT S + D I + + L Sbjct: 322 LADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKL 381 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + +++ TK+ E+L E L G ++ D+ +R + LR Sbjct: 382 DALTRILEVTEFDAMIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRD 441 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G D+LV ++ GLD+ +S V D S + IGR R G+AIL+ Sbjct: 442 GRLDILVATDVAARGLDVERISHVVNYDIPH-----DTESYVHRIGRTGRAGRSGEAILF 496 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + ++I + ++ + + K Sbjct: 497 VTPRERRLLRSIERATKSSIEEMQLPTVDEVNETRKAK 534 >UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi RepID=D2VEC4_NAEGR Length = 535 Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 57/393 (14%), Positives = 121/393 (30%), Gaps = 34/393 (8%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 + ++ V F + + + I + Sbjct: 123 SGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIINALL--KSGIHKDKRRF 180 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLE-----MMNELGYCSGIENYSRFLSGRGP 318 + V+L + L +Q + +F + ++ G SG + Sbjct: 181 APNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSGYQMKQLERGVDIL 240 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P + D++ + L + ++ + + M + + G +P Sbjct: 241 VGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEGSGMPPKG------ 294 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQ 431 T+ SAT + + + D++ G + + Sbjct: 295 -------DRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGK 347 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D L+ + ++ E+ LV K + + E L G + +H D D R +R Sbjct: 348 QDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQ 407 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + G ++LV ++ GLD+ +V+ V D + S I IGR R N G A Sbjct: 408 FKDGYTNILVATDVAARGLDIEKVAHVINYDLP-----KEIDSYIHRIGRTGRVGNLGIA 462 Query: 551 ILYGDKITPSMA-KAIGETERRREKQQKYNEEH 582 + D + + + + ++ E+ Sbjct: 463 TAFFDPSEDGKLCRELVKILKDANQEIPEFIEN 495 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 231 bits (588), Expect = 8e-59, Method: Composition-based stats. Identities = 117/660 (17%), Positives = 214/660 (32%), Gaps = 77/660 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ +++ E L L G+ +G+ A + DL R ++ P + A Sbjct: 2 YEALLKSTAEYQKIAESLHT-PGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++K AV P D + E RLS A+ Sbjct: 61 THFADDLKALGLTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGAL 105 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V A+ D +L+ L L GM+ ++ A++ RL Y R Q Sbjct: 106 AGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDG 165 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG+++DI+ + RVE +D+E++ L+ FD LT + ++ + + P Sbjct: 166 PGQFSVRGDIVDIYAPDMHQ-PARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREV 224 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E A + ++ + + + + T+ DL ++ ++ Y Sbjct: 225 LFGSTA----------ETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKY 274 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P TL D+L + + V+DE L+E G P Sbjct: 275 YGIRYPQ-----PATLLDHLDS-PIFVLDEVGGIRDAQKATEYRRGEELTGLLEEGVLCP 328 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + A Q + N+ + + D + Sbjct: 329 GLDVLYQTMDDLAIAAQKQ---STLLCENFLRGMNEFKLKDLINVEA------FAAPNWG 379 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L ++ A V + + T + A LT L + G V Sbjct: 380 GDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVSM-------------S 426 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 RD+R + V V L G P I + G + + R N Sbjct: 427 RDVRPAKGIVQVLPGHLTAGCTFPFAHAAVISSR-RHGLDEEAAAENKR-----RKKNKN 480 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 A+ + S K + Y + QG K + I G ++ Sbjct: 481 ALS-----SLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDVL----- 530 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 P+ + D + +P ++ K+ +L G Q + + A ++ +L +L Sbjct: 531 ----YVPVTQLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYAR 586 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 126/416 (30%), Gaps = 35/416 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 YP + + + ++ Q L Sbjct: 625 KQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSR 684 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G+ + R + L + + +V +H + + + Sbjct: 685 MEAFPVKIGMLSRFRT------AKQQKETLRGLQSGSVDIVVGTHRLLSKDVRFHDLGLV 738 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + + + +SATP L + + D Sbjct: 739 IIDEEQRFGVK--------HKEKLKENFIGVDMLTLSATPIPRTLNMAMSGIRDLSTIEQ 790 Query: 417 GLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 ++ +E + L +++ A +V E ++ + G RV Sbjct: 791 PPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAHVSQLVPGARV 850 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E + + L GE D+LV L+ G+D+ + + I DAD+ G + Sbjct: 851 GIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMGLAQ--- 907 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ KA Y K + + ++R + G G + Sbjct: 908 -LYQIRGRVGRSGR-KAYAYFTF---RRDKTLTDIAQKRLSAIREFTAFG---SGFRIAM 959 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 D+ G ++ + V D+ K L Q I +G +Q ++ Sbjct: 960 RDLQIRGAGSLLGHSQHG-------HMEAVGYDLYVKMLGQAIARAKGEPVQRDKS 1008 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 119/402 (29%), Gaps = 18/402 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + +N+ ++ L + +++ E+ S E G+ Sbjct: 52 TGKTAAYSLPIITKMSDNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIV--TLAVYGGD 109 Query: 321 PPPTLFDYLPADGL-LVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLK 378 L + +VV + + + L E L + + Sbjct: 110 SIDRQIRALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQE 169 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPII---EVRPVATQVDD 434 QT+ SAT + + + + D + + E Sbjct: 170 ILSHTPSERQTLLFSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKH 229 Query: 435 LLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L + + ++ TKR ++L + L+ G V +H D+ R+ + Sbjct: 230 RLEALCRLLDLDNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKF 289 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G ++L+ ++ G+D+ V+ V D + S + IGR R G A Sbjct: 290 KEGTLNLLIATDVAARGIDVEGVTHVFNYDLP-----QDVESYVHRIGRTGRANKSGTAY 344 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAK 609 SM K I + Q+ I + + ++ ++ K Sbjct: 345 SLVTPKDFSMLKQIQNVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPS 404 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + M K + + + ++ + + Sbjct: 405 AIELTESYDAVSIISALMKMKFENEIVFDYSSNKLEAPKKED 446 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 100/353 (28%), Gaps = 29/353 (8%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + T+ T + L L E + + +T Sbjct: 233 IKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQT 292 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 ++ + P L D + + + ++ + + M Sbjct: 293 AILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMG 352 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVV 413 + + P A T SAT + + + V Sbjct: 353 FEPQIRKIVGQGMPPK--------------TARTTAMFSATFPKEIQLLAKDFLKENYVF 398 Query: 414 RPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G ++ + + +L+ + A N VLV TKR A +L +L Sbjct: 399 LAVGRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATN-LVLVFVETKRGANELAYFL 457 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 R +H D+ +ER + R G+F +LV + GLD+P V V D Sbjct: 458 NRQQIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLP-- 515 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R N G A + + + + + ++ Sbjct: 516 ---GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVPE 565 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 101/677 (14%), Positives = 200/677 (29%), Gaps = 85/677 (12%) Query: 3 KPFKLNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL 56 +P + +P DQ A+R L E + +++ TG F +A++ Sbjct: 9 RPTTAEAPLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATG-LFPFLVADLARRA 67 Query: 57 --QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++P +++ L + + +P+ +T + S Sbjct: 68 TAEQPLVIVTATTRATEDLRAALSALVGTEHL-------------VELPAWETLPHERLS 114 Query: 115 VNEHIEQMRLSATKAMLERRD----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + VV+ V ++ L + VG Sbjct: 115 PRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAAVGDTYPLE 174 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + R L YAR D +RG F VRG ++D+FP ++ +RV+LF +E++ + F Sbjct: 175 DLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVA 233 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + PR P + + + EEL Sbjct: 234 DQRSLDPAPRGLDAPPCREILLTPAVRERARARAEEL--------------------PGV 273 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L + + G+E+ S L + + D LPA +V + + + Sbjct: 274 RDLLLRIADGIAADGMESLSPVL-----VDGMEQVADVLPAGARFLVIDPEKARARADEL 328 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 L + + + + Sbjct: 329 VATTDE-FLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHAREGGRPWFT--LAAFGLDT 385 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 V T + + D ++ +R A VL T + A + E L G Sbjct: 386 DVDLTTSST----THPGYSGKPGDAAKDLERRRAEGWSVLSTMVGPGGARHVAENLRAEG 441 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + E+ + GE +V + EGL ++ L+ + D G Sbjct: 442 LPAVFS---------AELDAPVAPGEA--VVTVGPFAEGLVDEDLQLILAAERDLTGKSG 490 Query: 531 SERSLIQTIG--RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + G R + + R + + G Sbjct: 491 A------RRGEERKMPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTRR-----AVGSG 539 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + + L + +K G P + D V + + + ++ + G + Sbjct: 540 AKRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGE--EPSVNRMGGADWAKTK 597 Query: 649 NLEFEEAAQIRDQLHQL 665 + + +I D+L +L Sbjct: 598 SKARKAIREIADELVRL 614 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 71/471 (15%), Positives = 137/471 (29%), Gaps = 39/471 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + EL ++ E + D L P + + ++ Sbjct: 629 DTPWQREL-EDSFEFVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFK 687 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q E G+ + SRF + L D Sbjct: 688 AVQDGKQVAVLAPTTLLAQQHLDTFAER--YTGFPVTVRGLSRFQNPADSEATVEGLRD- 744 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + +V +H + + + + Sbjct: 745 ---GSVDIVIGTHRLLTGNVRFKDLGLLIVDEE--------QRFGVEHKETLKALRTNVD 793 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + +SATP LE + + + + T + + V Q D ++ IR+ Sbjct: 794 VLSMSATPIPRTLEMAVTGIRELSILATPPEERHPVLTYVGAQEDKQVTAAIRRELLREG 853 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + +L E RV+ H ++ + ++ D +FDVLV + Sbjct: 854 QVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTI 913 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + +AD+ G + L Q GR R+ + T K + Sbjct: 914 VETGLDISNANTLIVENADRFGLSQ----LHQLRGRVGRSSERAYAYFLYNAT----KPL 965 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E R N + G G+ + D+ G + V Sbjct: 966 TELAHDRLTTLATNTDLG---AGMQVAMKDLEIRGAGNLLGGEQSG-------HIAGVGF 1015 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELFIAAS 673 D+ + + + + G + + E A D + R A S Sbjct: 1016 DLYVRMVGEAVAAFRGEGRAPEKEIRVELPLDAHVPHDYIGSERLRLEAYS 1066 >UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Magnaporthe grisea RepID=PRP28_MAGGR Length = 674 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 102/356 (28%), Gaps = 21/356 (5%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++ F + ++ E L L E + R Sbjct: 300 ISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATR 359 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 F + + + ++ P L D L L++ S+V + + Sbjct: 360 MGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADR 419 Query: 350 MYRGDRARKETLVEYGFRLPSALDNR--------PLKFEEFEALAPQTIYVSATPGNYEL 401 M G + + + KF QT+ SAT Sbjct: 420 MVDGGFEDSIHKILAALPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVE 479 Query: 402 EKSGGDVVDQVVRPTGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + G + ++ + + L + + V+V Sbjct: 480 RIAKNYLKHPAMVTIGTIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVN 539 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK + + + L+ LH + +R ++ R G +VLV ++ GLD+P+ Sbjct: 540 TKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPD 599 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 VSLV + IGR R G AI + + + + Sbjct: 600 VSLVIN-----FNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIM 650 >UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA Length = 688 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 121/378 (32%), Gaps = 38/378 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H LA E +E + + Sbjct: 313 QTGTGKTLAFLLPGMIHTEYQSTPRGTRGGANVLVLA----PTRELALQIEMEVKKYSFR 368 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G ++ P L D + A+ + V +++ + + M Sbjct: 369 NMKAVCVYGGGDRRMQISDLERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRML 428 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + V R QTI SAT + + + Sbjct: 429 DMGFEPQIRKVMLDIRPD-----------------RQTIMTSATWPPGVRRLAQSYMKNP 471 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G LD +I++ + + + + +++++ K A+DL+ Sbjct: 472 IQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSFVRNMSNTDKIIIFCGRKARADDLS 531 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G + +H + D +R + I D++ G +LV ++ GLD+ +++ V D Sbjct: 532 SDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHILVATDVASRGLDIEDITHVINYD- 590 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F R+ + +GR R G +I + + MAK + + + E+ + +E Sbjct: 591 ----FPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAKELIDILQEAEQ--EVPDEL 644 Query: 583 GITPQGLNKKVVDILALG 600 + K + + A Sbjct: 645 HNMARRF-KAMKEKRAAE 661 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 101/354 (28%), Gaps = 37/354 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + + + R E Sbjct: 137 QTGSGKTASFLLPAVIHIMAQPRLLRNEGPICLILVPTRELAQQVLVVAKEFADAAS--- 193 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 M G G + G P L D++ L+ +++ + + M Sbjct: 194 -LRAMCFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRM- 251 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 L + + K QT+ SAT + + D Sbjct: 252 ----------------LDMGFEPQIRKIIGHTRPDRQTLMWSATWPREVQTLAREFLTDY 295 Query: 412 VVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I+E+ ++ L+ + R LV TKR + LT Sbjct: 296 IQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELLTSF--GRARTLVFVETKRRTDQLT 353 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G V +H +R + + + G ++LV ++ GLD+ + V D Sbjct: 354 NSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDVASRGLDIDNIEYVVNFD- 412 Query: 524 DKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 F I IGR AR+ G A + A+ + + ++ Sbjct: 413 ----FPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARDLIDILDEANQEI 462 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 111/385 (28%), Gaps = 16/385 (4%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + L+ ++ + T+ + E G + G Sbjct: 55 FTLPMLQRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGG 114 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPL 377 D L ++V + G + + L E L + Sbjct: 115 VG-MGAQIDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIK 173 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQ 431 K Q++ SAT + E + G + D + + ++ ++ Sbjct: 174 KVLALVPKHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSK 233 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL+ I +VLV T TK A ++ E+L ++G LH + R + ++ Sbjct: 234 KKALLTHIINEHN-WSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQG 292 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G LV ++ G+D+ E+ V + + IGR R +G+A Sbjct: 293 FKDGTIRALVATDIAARGIDIDELPHVVNYEIPN-----VSEDYVHRIGRTGRAGNSGEA 347 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN-KKVVDILALGQNIAKTKAK 609 + + I ++ ++ + + G Sbjct: 348 VSLVCLDEEGFMQDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRD 407 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + K Q Sbjct: 408 VMQAAAKAARSEMMQRIRDTKGAQP 432 >UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa RepID=Q9GV13_HYDMA Length = 797 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 123/404 (30%), Gaps = 39/404 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ-RLTQRT 290 F I + R + ++ E++ LA E ++++ R + Sbjct: 398 QTGSGKTAAFLIPVLNTLMQFRSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQN 457 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++ G P L D+L + + + ++ + + M Sbjct: 458 TSIKPVVIYGGVQVAYHLRQVQQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRM 517 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + F +P T+ SAT + + + Sbjct: 518 LDMGFLPEIKAIINDFDMPPK-------------EDRHTLMFSATFPTEIQNLAAEFLNN 564 Query: 411 QVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G + I + + D L+ + R LV TKR+A+ L Sbjct: 565 YVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIEILDTEGTN--RNLVFVQTKRLADFLA 622 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 YL ++G +H D +R E + + + G VL+ + GLD+ +V V D Sbjct: 623 SYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHVLIATAVAARGLDIADVKQVINYDL 682 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYNEE 581 I IGR R GKAI + + +A+A+ +T + Sbjct: 683 P-----DEIEEYIHRIGRTGRIGNKGKAISFFTRGKDEGLARALVKTL---------ADA 728 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 P L + L G + + E + Sbjct: 729 EQEVPSWLEEAAESALGTGYGPKGGRFASKDSRFNNAELNGGSY 772 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 61/394 (15%), Positives = 128/394 (32%), Gaps = 27/394 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + E ++ ++ ++ + +++ +E+ + + G+P L Sbjct: 78 IQKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKR--IRVLPVYGGQPIERQIRSLK 135 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V+ + I + L E L + + QT Sbjct: 136 RGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQT 195 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA-- 444 + SAT L S + V P I+ T+ D + + + Sbjct: 196 MLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETR--DKVDGLCRILDTT 253 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++++ TK+ ++L L G LH D+ +R +++ R G+ D+LV + Sbjct: 254 DDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATD 313 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + GLD+ ++ V D S + IGR R G A+ + K Sbjct: 314 VAARGLDIDNITHVVNFDVP-----SDSESYVHRIGRTGRAGNTGVALTFITPREFRQLK 368 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + + + + + + + + V + + PIVE Sbjct: 369 LIERSIKTKIIRGTLPTDASVLERQREQIVSKMQT------ILEQDRYQDYLPIVETLEK 422 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 D+ Q M + A+ LE + Sbjct: 423 DYDV-----QDIAAAALKFMQEGAKALEEPAEEE 451 >UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) n=2 Tax=Eumetazoa RepID=B8A609_DANRE Length = 719 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 58/421 (13%), Positives = 127/421 (30%), Gaps = 41/421 (9%) Query: 193 FRVRGEVID--IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +++ + ++ + + + + L + + H Sbjct: 283 FAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIA-QTGTGKTLAYLLPGFIHM- 340 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + ++ E +E + + + G + Sbjct: 341 ---DGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKYSYKGFKSICIYGGGDRNAQIKV 397 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + + + +++ + + M + + R Sbjct: 398 VTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPD- 456 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PI 422 QT+ SAT + + D ++ G LD Sbjct: 457 ----------------RQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQT 500 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + D + I + ++VL+ K A+DL+ L G V+ LH D + Sbjct: 501 VLFVQEDEKKDYVFDFIHR-MEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQ 559 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R E ++D + G +LV +L GLD+ +++ V D F R+ + +GR Sbjct: 560 CDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYD-----FPRNVEEYVHRVGRT 614 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+++ + +A + R + EE + + K + G Sbjct: 615 GRAGRSGESVTLVTREDWRVAAELITILERSGQ--DVPEELVLMAERYEKHRREKEMFGP 672 Query: 602 N 602 Sbjct: 673 R 673 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 62/359 (17%), Positives = 119/359 (33%), Gaps = 24/359 (6%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ ++ ++++ Y + + G L + + + Sbjct: 171 VVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQGGAHICIATPGRLL 230 Query: 345 PQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + G R L E L + + K + QT+ SAT + + Sbjct: 231 DILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQTVMWSATWPSEVRDL 290 Query: 404 SGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTL 454 + + D V G D ++ V + + LL +R+ A +R L+ Sbjct: 291 AEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLREINAEGDQRTLIFVA 350 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK + + L ++G R H D+ +R + R G+ +LV ++ GLD+ + Sbjct: 351 TKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPILVATDVAARGLDVSD 410 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 + V D + S + IGR R+ G AI AK + +E Sbjct: 411 IKYVINYDYP-----DTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQLVSVL--QE 463 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 +Q+ N E + N + A+ RP + D + + Sbjct: 464 AKQEVNPELLELVD------RQVSQKFANRRRRPAQQSWDRRPQHRQGDRFGDYAQETR 516 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 106/314 (33%), Gaps = 20/314 (6%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + L + L++ + ++ + G T + Sbjct: 195 LRSGDGPIVLVLAPTRELCLQIKDVFDEYCRF--FNMRCTAVYGGVSSYTQKRDISMGCE 252 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV I +R L E L + + K QT+ S Sbjct: 253 VVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDRQTLMWS 312 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + + V G ++ I+ V + + L + + Sbjct: 313 ATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHESLNE--KK 370 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 NE+V++ TKRM ++L + L G + +H D R II D R G ++L+ ++ Sbjct: 371 NEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATDV 430 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMAK 563 GLD+ V+LV D F + + IGR AR G + + + AK Sbjct: 431 AARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACAK 485 Query: 564 AIGETERRREKQQK 577 + + + + Sbjct: 486 ELVKILKEANQDVP 499 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 115/356 (32%), Gaps = 38/356 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H L L N + + + + Sbjct: 258 QTGSGKTLSFMLPALVHINAQDPVKPGEG---PIALVLAPTRELANQIQEQCFKFGSKCK 314 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D+L ++ + + +++ + + Sbjct: 315 -ISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADR-- 371 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 L + K QT+ SAT + D Sbjct: 372 ---------------MLDMGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGD 416 Query: 411 QVVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G +D +E+ + + D + EI +++ ++ T TK+ +DL Sbjct: 417 PIHIQIGDMENNVNNDIDQQVEIIDKSQKYDR-VKEILSTMTRSDKTIIFTQTKKDCDDL 475 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++ L+ R +H D +R +++ + G + L+ ++ GLD+ ++ LV D Sbjct: 476 SKALQTDNIRNICIHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYD 535 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK-ITPSMAKAIGETERRREKQQ 576 F + + +GR R GKAI + D+ ++K + + ++ ++ Sbjct: 536 -----FPKQIEDYVHRVGRTGRAGAQGKAISFLDQYEDKKISKELVDVLKQNNQEI 586 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 106/673 (15%), Positives = 216/673 (32%), Gaps = 88/673 (13%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-IADLQRP 59 M + I L D + G++ K +A++ L P Sbjct: 1 MELLKNMADTLTEYKKSVAHI------LSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSP 54 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +V+ ++ AA+L ++ + A F P+SD + + ++ Sbjct: 55 VLVITESEASAAKLTEDINTMCGDTAAYQF-------------PASDLTLADTEAQSQEY 101 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 E R+ A L + ++++S A L D+ K + L G I + L Sbjct: 102 EYKRIETLSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVS 161 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R D +G F RG + DI+P SD +R+EL+ +E++ ++ FD T + + T+ Sbjct: 162 AGYTRCDMIEGKGQFSFRGSLADIYPVSSD-YPVRIELWGDEIDTVASFDIDTQRRIDTV 220 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 +I P + + ++ + E+ +K E K R + D+ + Sbjct: 221 KSVSITPCGETIFEEGVLSGTLQTLLEKTEKNKKKNDEAAK---------RIRRDIARLR 271 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + + Y + P ++FDY ++ T + Sbjct: 272 DGISVCCLNRYFPLCY-----KEPGSIFDYAST----LIVSESFTAAEAAKGAISAHLED 322 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-PTG 417 L+ L LD + E++ + + G +D Sbjct: 323 LKLLTEDGVLCKGLDRYLMSKAEYQDTVKNKVRLYM------DTFIRGGGIDLSDILKVD 376 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 I++ + + L E+ + ++ T + A+ L E L + G + Y Sbjct: 377 S----IQLSAWSGEYKMLFEELDNYSRNGYSCVIFGGTDKAAKILAEDLHDKGYKADY-- 430 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + + LG V+ +L G + PE + + S Sbjct: 431 --------AKNPKKFYLGRITVV--EGILSAGFEYPEEKIAVLTRTSASSSKTSAPK--- 477 Query: 538 TIGRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + G I D + E QK +T ++K + I Sbjct: 478 -----KKFKKGAQIRSLSDISQGDLVVHGSYGIGVFEGVQK------LTADKVSKDYIKI 526 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEA 655 G ++ P+ + D + + ++++L + A+ Sbjct: 527 KYAGTDVL---------YVPVTQLDLISRYIGSGDADTVRLNKLGTDTWKKAKTKAKAAT 577 Query: 656 AQIRDQLHQLREL 668 ++ +L +L Sbjct: 578 QEMAKELIELYSR 590 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 67/438 (15%), Positives = 118/438 (26%), Gaps = 38/438 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ + Q Q L+ Sbjct: 629 KHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVLAWQHYQTVLKR 688 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G + LS + + L L +V +H + Sbjct: 689 ME------GFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFKDLGLV 742 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + +SATP L + + D V T Sbjct: 743 IIDEEQRFGVND--------KEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIET 794 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 D V ++ I + N +V + Sbjct: 795 PPGDRHPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEANI 854 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E + + R L GE DVLV L+ G+D+P + + I +AD G + Sbjct: 855 GIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQ--- 911 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R +A Y K + E +R + G G + Sbjct: 912 -LHQLRGRVGRTNR-RAYAYFTF---RRGKVLSEIATKRLDAIREFTRFG---SGFRIAM 963 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN---L 650 D+ G +++ +V DM K L + I E +G + Sbjct: 964 KDLEIRGAGSVLGQSQSG-------HLASVGYDMYIKLLNEAILEQQGKAPEITPECLID 1016 Query: 651 EFEEAAQIRDQLHQLREL 668 +A + + Sbjct: 1017 IRIDAFIPEKYISNQAQR 1034 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 50/394 (12%), Positives = 123/394 (31%), Gaps = 30/394 (7%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + E+++ + L + +++ E+ G + + G+ L Sbjct: 62 LETIDESSRNTQALILAPTRELAIQVAEEIDSIKG--SKRLNVFPVYGGQSIDRQIRELK 119 Query: 331 ADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + I + + L E L + + + + + Sbjct: 120 RGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRM 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRA 443 + SAT + ++ + + + + + + +LLS I Sbjct: 180 LLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVE 239 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ TK ++++ L E G LH D+ +R + + + + +VLV Sbjct: 240 KEFYGLI-FCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ G+D+ +++ V D ++ S + IGR R G A+ + + Sbjct: 299 DVAARGIDINDLTHVVNYDIP-----QNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNK------------KVVDILALGQNIAK--TKA 608 K I + ++++ + I K K D + + + Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQ 413 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + D + + + E Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANREGRDR 447 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 65/404 (16%), Positives = 117/404 (28%), Gaps = 14/404 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + T+ + G + ++ G+ Sbjct: 352 TGKTAAFALPILSRVDVRSRRPQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQ 411 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV I + L E L Sbjct: 412 DYEPQLKQLRRGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFV 471 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLL 436 E Q SAT + + + D + R + D + Sbjct: 472 LEKSPEGRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKI 531 Query: 437 SEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + V+V T TK + E L + G L+ D+ R I L+ Sbjct: 532 DALTRILEVEETDGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKR 591 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ DVLV ++ GLD+P +S V D S + IGR R G+AI++ Sbjct: 592 GQLDVLVATDVAARGLDVPRISHVFNFDLPH-----DSESYVHRIGRTGRAGRSGQAIIF 646 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I T ++ + I + + I + + T K Sbjct: 647 LTNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIA 706 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 E PM+M AL + +++ + E + + Sbjct: 707 Q--YAEESGKPMEMIAAALAEMSQNGRPFLLKERPKKQRERSDR 748 >UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomycota RepID=DBP3_YEAST Length = 523 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 117/370 (31%), Gaps = 50/370 (13%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 E + + + + ++ G E + + P L D L Sbjct: 188 ISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQ 247 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + + +++ + + M + E +A QT+ Sbjct: 248 EGSVDLSQVNYLVLDEADRMLEKGFEEDIKNI----------------IRETDASKRQTL 291 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQ 441 +AT E + + + + G D I+EV + LL +++ Sbjct: 292 MFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKK 351 Query: 442 RA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 NE+VL+ L K+ A + L+ +G V +H D+ +R + + + + G+ + Sbjct: 352 YHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSN 411 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +L+ ++ GLD+P V V F + + IGR R G A + Sbjct: 412 LLLATDVAARGLDIPNVKTVIN-----LTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQ 466 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 +A + + D++ G + K + G Sbjct: 467 EKHLAGGLVNVLNGANQPVP----------------EDLIKFGTHTKKKEHSAYGSFFKD 510 Query: 618 VEPDNVPMDM 627 V+ P + Sbjct: 511 VDLTKKPKKI 520 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 101/307 (32%), Gaps = 19/307 (6%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + G + + + G + L +V+ I Sbjct: 178 LVLAPTRELAMQIERESERFGKSSKLKC-ACIYGGADKYSQRALLQQGVDVVIATPGRLI 236 Query: 345 PQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + R L E L + + K QT+ SAT Sbjct: 237 DFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMFSATWPKNVQNL 296 Query: 404 SGGDVVD-QVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + V G + I+ V + +++ L+ ++ ++VL+ Sbjct: 297 AQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQL-DCLTQKDKVLIFAQ 355 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK+ E ++ L + G + +H D +R ++ + GE +L+ ++ GLD+ + Sbjct: 356 TKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATDVASRGLDVKD 415 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA-KAIGETERRR 572 VS V D F + + IGR R G A+ + + + Sbjct: 416 VSHVFNYD-----FPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKISREYVQMLHDA 470 Query: 573 EKQQKYN 579 +++ + Sbjct: 471 KQEIPID 477 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 105/324 (32%), Gaps = 13/324 (4%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ L + +++ ELG S + G+ L +VV Sbjct: 75 AVQALILCPTRELAVQVSEELGRLSKF-MRGVRIEAIYGGDSIDRQIRSLKKGVHIVVGT 133 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + D R L E L QTI SAT Sbjct: 134 PGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILFSATMSK 193 Query: 399 YELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTT 453 + + + D + + IE + + + + ++ + +LV Sbjct: 194 PIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIKSLLVFC 253 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR +++ E L+ G +H D+ +R ++ + G +LV ++ G+D+ Sbjct: 254 NTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAARGIDVS 313 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRR 572 + V D E + IGR R +GKA + K+I + + Sbjct: 314 GLDGVINYDIPM-----DEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTKVK 368 Query: 573 EKQQKYNEEHGITPQGLNKKVVDI 596 ++ I + V +I Sbjct: 369 IEKGVIPSFEDIVGVRKARFVENI 392 >UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS Length = 578 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 108/356 (30%), Gaps = 38/356 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ-RLTQRT 290 F + +T + + A E + + R Sbjct: 207 QTGSGKTAAFLVPILNLLLTDAVDLEIGKPQ-----AVIVSPTRELAIQIYHEARKFSHE 261 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + + G +N S + P L D++ + D + + + M Sbjct: 262 SYLKISILYGGTSVKYQNESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRM 321 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + + QT+ SAT +G + + Sbjct: 322 LDMGFSESMRKIVTHCTMR---------------AQHQTLMFSATFPQEIQRMAGEFLNN 366 Query: 411 QVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I + L+ +++ A +V TKR A+ L Sbjct: 367 YIFVTIGVVGGACSDVKQTIYEVTKYNKRRKLIDILKESAD---GTIVFVETKRGADFLA 423 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 YL E +H D +R + +RD + G+ VL+ ++ GLD+ V V D Sbjct: 424 SYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMKVLIATSVASRGLDIKNVKHVVNYDM 483 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQK 577 ++ + IGR R NG+A + D ++A + + ++ Sbjct: 484 P-----KTIDDYVHRIGRTGRVGNNGRATSFFDPDQDSALASDLVKILEGSDQVVP 534 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 115/332 (34%), Gaps = 17/332 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + K + L+ + +++ +E+ + + R ++ G + + + L +V Sbjct: 67 DRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE-LKKGADIV 125 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I R D+ R L E L E QT+ SAT Sbjct: 126 VGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVLFSAT 185 Query: 396 PGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 LE + + V T ++ + V P + + L+ I Sbjct: 186 MPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLI--SMQNPHL 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+M ++LT L G LH D+ R ++ + + G+ ++LV ++ Sbjct: 244 AMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAAR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ + +V D + + IGR R G A+ + + Sbjct: 304 GIDVDSMDVVFNYDLP-----QESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLER 358 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 T R + Q+ + L+ D+ Sbjct: 359 TTRSKLTQKPLPSLEEVRKIRLDFLREDLEHR 390 >UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q299A2_DROPS Length = 743 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 60/368 (16%), Positives = 115/368 (31%), Gaps = 37/368 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H Q LA E +E + + Sbjct: 354 QTGTGKTLAFLLPGMIHTEYQSIPRGQRGGANVLVLA----PTRELALQIEMEVKKYSFR 409 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G C ++ P L D + A + V +++ + + M Sbjct: 410 DMRAVCVYGGGCRRMQISDVERGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRML 469 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + V R QTI SAT + + + Sbjct: 470 DMGFEPQIRKVLMDIRPD-----------------RQTIMTSATWPPGVRRLAQSYMNNP 512 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G LD +IE+ ++ ++ + ++++V K A+DL+ Sbjct: 513 IQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKSFIKNMTKTDKIIVFCGRKARADDLS 572 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G + +H D +R + I D++ G +L+ ++ GLD+ ++S V D Sbjct: 573 SDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVRILIATDVASRGLDIEDISHVINYD- 631 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F R+ + +GR R G +I + + MA+ + E Q E+ Sbjct: 632 ----FPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMAQELINILE--EADQVVPEQL 685 Query: 583 GITPQGLN 590 + Sbjct: 686 HSMARRFK 693 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 123/364 (33%), Gaps = 14/364 (3%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K L+ L + +++ E+ + + ++ L G+ L +V Sbjct: 69 KVKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVL-PIYGGQDIVKQIRSLKDGTQIV 127 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + + D L E L QT+ SAT Sbjct: 128 VGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSAT 187 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INERVL 450 + + D V + P + + + + + + + + Sbjct: 188 MPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSI 247 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR ++L + L+ G LH D+ V+R ++ R G D+LV ++ G+ Sbjct: 248 VFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGI 307 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V V D + + + IGR R GKA + I Sbjct: 308 DVGDVEAVFNYDVP-----QDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYC 362 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + Q + IT + K + ++ + + TK + + ++E D MD++ Sbjct: 363 KTKIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIE-KKLIEEDYTSMDLAA 421 Query: 630 KALQ 633 L+ Sbjct: 422 ALLK 425 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 68/435 (15%), Positives = 135/435 (31%), Gaps = 29/435 (6%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 Q A LLE + + T+ + ++E + + Sbjct: 46 GHAQTGTGKTAAFAIPAIELLEVESKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVV 105 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALD 373 G+ L + +V+ + + R + + L E L Sbjct: 106 PVYGGQEIERQLKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFR 165 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVAT 430 + + QTI SAT L + L P IE Sbjct: 166 EDMEFILKDTPIDRQTIMFSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI 225 Query: 431 QVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 Q + + + + LV TK + + E L+ G LH D++ +R ++ Sbjct: 226 QENAKGEALARLIEYRNVKLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKV 285 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + R G ++LV ++ G+D+ V V D ++G + IGR R Sbjct: 286 MNGFRNGNIEILVATDVAGRGIDVNNVEAVFNYDLPRDG-----EDYVHRIGRTGRAGKK 340 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN------KKVVDILALGQ 601 G A + K I + + K + ++ + +VD +G+ Sbjct: 341 GIAFSFIVGKQIYNLKKIERINGIKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGK 400 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE---GLMMQHAQNLEFEEAAQI 658 + + + ++ D +D++ + I +Q N ++EE Sbjct: 401 YVNQVE--------KLMGDDYTALDIAAALFKMTILRDSVTFDDSVQFESNFKYEERNSF 452 Query: 659 RDQLHQLRELFIAAS 673 + + + R+ S Sbjct: 453 KKKPGKYRDRNFGRS 467 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 58/343 (16%), Positives = 118/343 (34%), Gaps = 14/343 (4%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + +N+K + L + +++ E+ + + G+P L Sbjct: 64 KVNKNSKTTQAMVLCPTRELSIQVAEEISKLAKY--KGVTVVPIYGGQPIERQIRSLKMG 121 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V I I + + + L E K F QT + Sbjct: 122 VQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTF 181 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--IN 446 SAT + ++ + + + + P + A + + L + + Sbjct: 182 FSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNP 241 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +V TK+M +DLT L+ G LH D+ ++R ++ R D+LV ++ Sbjct: 242 KLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVA 301 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ +V LV D + + IGR AR G AI + + I Sbjct: 302 ARGIDVDDVDLVINYDMP-----QDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQI 356 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + + +++ + + + + DI TK Sbjct: 357 QKYTKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKE 399 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 104/339 (30%), Gaps = 13/339 (3%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K + + T+ + E Y G R L G+ L ++V Sbjct: 68 KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRIL-PIYGGQDINRQIRALKKHPHIIVG 126 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I R L E L QT+ SAT Sbjct: 127 TPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMP 186 Query: 398 NYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INERVLVT 452 + + + + + P I+ + Q + + E +V Sbjct: 187 DPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVF 246 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR ++L+E L G +H D+ +RM ++R + G +VLV ++ GLD+ Sbjct: 247 GRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDI 306 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 V+ V D + S + IGR R G A+L+ K I T +R Sbjct: 307 SGVTHVYNFDIP-----QDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR 361 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + + +N K Sbjct: 362 KMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKR 400 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 55/414 (13%), Positives = 109/414 (26%), Gaps = 36/414 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ L L ++ E + + Sbjct: 46 QTGTGKTAGFTLPLLHRIARHANTSTSPARHQTRALILAPTRELAM-QVFESVKTYSKHL 104 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D+L + + + + + M Sbjct: 105 PLRSVCVYGGVDIRPQQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRML 164 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + Q++ SAT + + + + Sbjct: 165 D-----------------MGFIPDIKRILALLPKQRQSLLFSATFSDEIKRLADQMLKEP 207 Query: 412 VVRPTGLLDPIIEVRPVATQ------VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + + E +LL+ + + + + LV TK M L Y Sbjct: 208 QLIEVARRNMVSETITHVVHPVSSGMKRNLLAHLLRH-KPDTQALVFVDTKLMCGRLAHY 266 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 LE G +H D +R + + + G+ VLV ++ GLD+ E+ V + Sbjct: 267 LERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVATDVAARGLDIDELPFVINFELPH 326 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE---- 580 + + IGR R +G AI I + + + Q++ Sbjct: 327 -----TAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLSEIEKLIKLQIPQERVPGFDPD 381 Query: 581 -EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + ++ A A+ A G VE + + Sbjct: 382 PDFHEAGSRGHRGRRPAAAAADTEAQAPAARSGGRERGVERSAEARREPARERE 435 >UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9ETM9_ORYSJ Length = 468 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 99/343 (28%), Gaps = 42/343 (12%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + +L L + +++ E P L D Sbjct: 153 VNAQPILAPGDGPIVLVLAPTRELAVQIQQEATK----------FGVEIVIATPGRLIDM 202 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + +++ + + M + K Q Sbjct: 203 IESHHTNLRRVTYLVLDEADRMLDMGFEPQI-----------------KKIVSQIRPDRQ 245 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIR 440 T+Y SAT + + + D G + +E+ + + + L++ + Sbjct: 246 TLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVN-LL 304 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + R+L+ TK+ + +T L G +H D ER ++ + + G+ ++ Sbjct: 305 EDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIM 364 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 ++ GLD+ +V V D F S + IGR R G A + Sbjct: 365 TATDVAARGLDVKDVKYVINYD-----FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANA 419 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 AK + ++ + G Sbjct: 420 RFAKDLINILEEAGQKVSPELANMGRGAPPPSSGHRDRYRGYG 462 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 108/332 (32%), Gaps = 17/332 (5%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ LT + +++ E+ + + G+ L +V+ Sbjct: 84 RVQAIVLTPTRELAIQVAGEIRKIAKYKRVRS--VPIYGGQSIVHQIRALKQGVQIVIGT 141 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I R L E L + QT+ SAT N Sbjct: 142 PGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFPN 201 Query: 399 YELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTT 453 + + D + P I+ + L + + + ++ Sbjct: 202 EVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSEDIQLGIIFC 261 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR +DL E L G LH D+ +R ++R R E ++LV ++ GLD+ Sbjct: 262 RTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVD 321 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 +V+ V D + S + IGR R G AI + K I +++ Sbjct: 322 DVTHVINYDVP-----QDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQK 376 Query: 573 EKQQKYNEEHGITPQG---LNKKVVDILALGQ 601 ++ + + K+VD++ G Sbjct: 377 ITVREVPSLEDVAERQAEMWRSKIVDVIREGG 408 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 228 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 55/447 (12%), Positives = 118/447 (26%), Gaps = 66/447 (14%) Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + G +++ + Y + G + + Sbjct: 173 IRTFEQGQF--PEVLMKEFEKAGYTEPTNIQKIG------------------WPVAL--- 209 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + F + + + + L L Sbjct: 210 -----SGRDMVGVAQTGSGKTVAFMLPA---IIHVNAQAPLKHGDGPVVLVLVPTRELAM 261 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 E R + + G + P L D+L + Sbjct: 262 QVQAEATRFGKMAG-LMNTAIFGGVPRYNQANDLRRGVEICIATPGRLLDFLETGVTNLK 320 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +++ + + M L + + + QT SAT Sbjct: 321 RVTYLVLDEADRM-----------------LDMGFEPQIRRIVSQIRPDRQTTMWSATWP 363 Query: 398 NYELEKSGGDVVD-QVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + G +EV + +++ R Sbjct: 364 KEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDWLKETYPKGSR 423 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++V T TK+ A+ LT + + +H D + ER I+ D + G +VLV ++ + Sbjct: 424 IIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATDVAQR 483 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI--TPSMAKAI 565 GLD+ V V D ++ + IGR R G ++ + TP + Sbjct: 484 GLDIKNVEWVVNYDMP-----KTVEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRVRMA 538 Query: 566 GETERRREKQQKYNEEHGITPQGLNKK 592 + + E ++ + ++ Sbjct: 539 KDIVKCMEDVKQTPPQSLYDMAAISIA 565 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 228 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 61/405 (15%), Positives = 128/405 (31%), Gaps = 41/405 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + EL +++ + L Q + + Sbjct: 323 QTGSGKTAAFLLPILQQLMADGVAA-----SSFVELQEPEAIIVAPTRELINQIFLEARK 377 Query: 292 FDL-----EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 F ++ G +G + P L D + + + ++ + + Sbjct: 378 FAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCGTPGRLLDVIQRGWIGLTKLRYLVLDE 437 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M + +P QT+ SAT + + Sbjct: 438 ADRMLDMGFEPDMRRLVASPGMPPK-------------ENRQTLLFSATYPQDIQKLAAD 484 Query: 407 DVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + D + G ++ ++ + LL ++ NER +V TKR Sbjct: 485 FLKTDYLFLAVGIVGGACSDVEQTFVQVTKYSKREQLLDFLKTI--GNERTMVFVETKRQ 542 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ + +L + +H D + ER + + D + G+ +LV ++ GLD+PEV V Sbjct: 543 ADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSVAARGLDIPEVQHV 602 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA-IGETERRREKQQ 576 D ++ + IGR R G+A+ + D S A + + +++ Sbjct: 603 VNFDLP-----KNIDEYVHRIGRTGRCGNIGRAVSFYDPEVDSQLAASLVTILSKAQQEV 657 Query: 577 KYNEEHGITPQGLNK-KVVDILALGQNIAKTKAKGRGKSRPIVEP 620 E G + + K++ G + +P+ + Sbjct: 658 PSWLEESAFSGGATSFSQANKSFASSDSRKSQQAGCERRQPVPQI 702 >UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7VM16_9ANNE Length = 990 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 61/418 (14%), Positives = 129/418 (30%), Gaps = 34/418 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN-NKLLEEQRLTQRT 290 F + T + + L E ++ E R Sbjct: 562 QTGSGKTASFLLPMLTKMLGTGFEPPCVEDGCAMPLMLVLAPTRELVLQIFHETRKFSFD 621 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++ G S + P L D+ + + ++ + ++ M Sbjct: 622 TVVRAVVAYGGVSSSYQEKEILKGAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRM 681 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV- 409 + QT+ SAT + + + Sbjct: 682 LDMGFHTAIASILSQGESGM-----------PSVNNRQTVVFSATIPEEVQKLAAKLLRE 730 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D + G ++ + + + D LL +++R +++V+ KRMA+ + Sbjct: 731 DYIFITVGCIGSANLDIEQYVLLMEQENKRDKLLEIVQKRGED--KIIVSVEEKRMADFI 788 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + +L + +H ++ ER + +RD R G +LV N+ GLD+PEV V D Sbjct: 789 SAFLSQASFPTASIHGNLTQQEREKALRDFRSGVSPILVATNVAARGLDIPEVKHVINYD 848 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG-----DKITPSMAKAIGETERRREKQQ 576 + IGR R GKA + + + S+ K + + + + Sbjct: 849 MPPH-----IEEYVHRIGRPGRCGNTGKATAFFVAEADNHLARSLVKVLSDALQEVPEWL 903 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + I G ++ G+++ + G + + + + +Q Sbjct: 904 EKMAADNIGMGGFSRPGG-GKFGGRDMRNNRPGGYQQQSRPSHQQDEGRFFAGEGSRQ 960 >UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=B7S475_PHATR Length = 575 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 56/352 (15%), Positives = 114/352 (32%), Gaps = 33/352 (9%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + ++ + RI + I LA R++ + ++LEE + R Sbjct: 187 GKTCGFLLPVFHQHLVKQTRIQGFTKPILLVLAPTREL---SVQILEEAQKFGRPLGIRS 243 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + + P L D + + ++ + + M Sbjct: 244 VCCYGGASKHPQIAALQRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGF 303 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + QT+ SAT + + + + Sbjct: 304 EPQIRSI----------------ILNIPPENRQTLLFSATWPKEIQALAHDFLKNPIQIN 347 Query: 416 TG---------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I + + ++D L +R + +++V K DL L Sbjct: 348 VGEVNALVANKDIQQTIVMCSESEKLDKLEQILRDLM--HGKIIVFVAKKISCNDLANRL 405 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E G V LH D ER +++ + G+ VL+ ++ GLD+ +V +V D Sbjct: 406 WEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVLIATDVAARGLDVKDVGVVVNYDMPS- 464 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + IGR R GKA + + A + + + +++ Sbjct: 465 -GVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDRKNATQLVQVLTKAQQEIP 515 >UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida RepID=DBP3_CANAL Length = 564 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 106/336 (31%), Gaps = 36/336 (10%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 E + + + + + G S + + + P L D + Sbjct: 228 CISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTANVVVATPGRLVDLI 287 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + +++ + + M + QT Sbjct: 288 NDGAINLGKVNYLVLDEADRMLEKGFEEDIKTI----------------ISNTSNSERQT 331 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIR 440 + +AT E + + V G D ++EV + L+ +R Sbjct: 332 LMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLR 391 Query: 441 QR---AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + ++L+ L K+ A + +L+ + V +H D+ +R + + G+ Sbjct: 392 KYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQS 451 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 ++L+ ++ GLD+P V +V F + + IGR R G A + Sbjct: 452 NLLLATDVAARGLDIPNVKVVIN-----LTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTE 506 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 ++ A+ R + EE KK Sbjct: 507 DEKHLSGALCNILRGANQ--PVPEELLKFGGHTKKK 540 >UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4FWG0_LEIMA Length = 923 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 61/375 (16%), Positives = 111/375 (29%), Gaps = 33/375 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I + + + + L L E ++LT T Sbjct: 515 QTGSGKTAAFLIPVVQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTD 574 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 +++ G Y + P L D + L + + + M Sbjct: 575 IFYDVV------YGGTRYPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRML 628 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT SAT L + + + Sbjct: 629 EMGFEEQIEELVASRYTDMPTVDD-----------RQTFMFSATFPQRILNLAKRYLRRK 677 Query: 412 VVR--------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 T + IE P ++D LL I + VL+ TK+MAED+ Sbjct: 678 YYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM-VLIFVETKKMAEDVN 736 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G +H D +R + D + +LV ++ GLD+P+V+ V D Sbjct: 737 RRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFDL 796 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY-NEE 581 + IGR R G A + ++ +A + + ++ ++ Sbjct: 797 P-----QEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLALDLHKYFSEHGQEIPKWFQQ 851 Query: 582 HGITPQGLNKKVVDI 596 +G D+ Sbjct: 852 EAELVEGEALLSRDM 866 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 114/338 (33%), Gaps = 13/338 (3%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + ++ ++ L + L++ E+ + + R + G+ L + Sbjct: 93 IDVQDRSVQTLILCPTRELALQVAEEIKKLAKYKRGIR-IEAIYGGDSIERQIRSLKSGV 151 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + + + + + L E L E QTI Sbjct: 152 HIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILF 211 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAIN--E 447 SAT ++ + D V+ + IE + + + + + + Sbjct: 212 SATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLK 271 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +LV TKR +++ E L+ G + LH D+ +R ++ R G ++LV ++ Sbjct: 272 LLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+ +V V D E + IGR R +G+A + + + I Sbjct: 332 RGIDVDDVDAVINFDIPL-----DEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQ 386 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + ++ I + + + Q Sbjct: 387 TYTKVKVEKGVIPSFEDIVGVRKARFIEQLQQTIQESK 424 >UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5_MONBE Length = 545 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 115/381 (30%), Gaps = 20/381 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T + + + V K L + + Sbjct: 147 FDKPT--AIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPALQHVKGLGRSKTNCPRVLV 204 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP- 345 T+ +N++ + G L LV+ + Sbjct: 205 LSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTALRQGCELVIATPGRLVDF 264 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 G L E L + QT+ SAT + Sbjct: 265 LNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQRQTLMFSATWPEEVRAIAA 324 Query: 406 GDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQR-AAINERVLVTTLTK 456 + + + G + +++V + LL +R+ A+ N +VL+ L K Sbjct: 325 NYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVLRKHPASKNAKVLIFALYK 384 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + A L +L+ V +H D++ +R +R + G+ +L+ ++ GLD+ V+ Sbjct: 385 KEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSHILIATDVAARGLDVKGVA 444 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 +V + + IGR R G A + + + A A+G RE Sbjct: 445 VVINYTFPL-----TIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHAGALGNVL--READ 497 Query: 576 QKYNEEHGITPQGLNKKVVDI 596 + E Q +K + Sbjct: 498 VEVPEALMKFGQHTKRKEHAL 518 >UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=8 Tax=Magnoliophyta RepID=D1IXE3_VITVI Length = 797 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 113/375 (30%), Gaps = 11/375 (2%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 S + P Y++ + + E ++ +E Sbjct: 352 TGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGI 411 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 + G + + P L D L ++ ++V + + M Sbjct: 412 KVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM 471 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + V + + + + + T SAT + + + VV Sbjct: 472 GFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVV 531 Query: 414 RPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEE 468 G +I + + + + ++++ ++ +V TK+ A++L + L++ Sbjct: 532 VTIGTAGKATDLITQHVIMMKESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDK 591 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G RV LH +R + R ++VLV ++ G+D+P+V+ V D Sbjct: 592 AGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP---- 647 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + IGR R G A + + + + + + Sbjct: 648 -GNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASK 706 Query: 588 GLNKKVVDILALGQN 602 + D + Sbjct: 707 FKPGAIPDRPPRRND 721 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 102/332 (30%), Gaps = 13/332 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + + T+ ++E Y G + +R L G+ Sbjct: 51 TGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVL-PIYGGQ 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L + ++V + I R L E L Sbjct: 110 DIGRQIRALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESI 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLL 436 QT+ SAT + + + + + + + Sbjct: 170 LSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKF 229 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + E +V TKR ++LTE L G +H D+ +RM +R + Sbjct: 230 DTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQ 289 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +VLV ++ GLD+ V+ V D + S + IGR R G A+ + Sbjct: 290 GAIEVLVATDVAARGLDISGVTHVYNFDVP-----QDPESYVHRIGRTGRAGKTGMAMTF 344 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 M +AI +T +R+ + K Sbjct: 345 ITPREKDMLRAIEQTTKRKMDRMKAPTLDEAI 376 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 227 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 16/340 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ ++ + + T+ + E + + G+ Sbjct: 57 TGKTAAFALPVLSNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQ 116 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV I + + L E L + Sbjct: 117 PYGQQLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAV 176 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQV 432 + Q SAT + + D V + ++ Sbjct: 177 LKKLPAKRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKL 236 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L + + +++ TK E+L L+ G ++ D+ +R I L Sbjct: 237 DALTRIL--EVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAML 294 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G+ D+LV ++ GLD+ +S V D S + IGR R G+AI Sbjct: 295 KEGKLDILVATDVAARGLDVERISHVLNYDIP-----YDTESYVHRIGRTGRAGRSGEAI 349 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L+ M + I R+ ++ + + +NK Sbjct: 350 LFATPREKGMLRQIERATRQPIEEMQLPSVEAVNDNRINK 389 >UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 n=1 Tax=Hydra magnipapillata RepID=UPI000192615D Length = 745 Score = 227 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 53/403 (13%), Positives = 117/403 (29%), Gaps = 39/403 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++ + + + + F + H + ++ Sbjct: 293 TEPSPIQCQAWPVLLSGMDCIGIA-QTGTGKTLAFLLPAFIHI----DGQPIPRDKRGGP 347 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 E + +E + + + G + P L Sbjct: 348 SCLVLSPTRELAQQIEMEVKKFHYRGIRSVCIYGGGDRSAQINLVRQGVEIIIGTPGRLN 407 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D L V +++ + + M + + R Sbjct: 408 DLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPD----------------- 450 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSE 438 QTI SAT + + D + G LD ++E + D ++ Sbjct: 451 RQTIMTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMDF 510 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIRDLRLGE 496 I A + ++++ K A+D++ L G ++ +H D D +R + + D++ G Sbjct: 511 I-SAMAPDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGA 569 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VL+ ++ GLD+ +++ V D F R + IGR R G A+ + Sbjct: 570 ARVLIATDVASRGLDIKDLTHVLNYD-----FPRHIEDYVHRIGRTGRAGRSGCALTFVT 624 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + ++ + D Sbjct: 625 REDWMHVAKLIPIMEEAGQEVPEELIEMAERWKKTQDRRDEEK 667 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 227 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 56/456 (12%), Positives = 116/456 (25%), Gaps = 38/456 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + +E L F + + + Sbjct: 24 YNEPTPIQAQAIPPVLEGRDLLGIA-QTGTGKTAAFMLPSIDRLREADNQTPFKSCRMLV 82 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R + + G G + P L Sbjct: 83 LAPTRELAGQIAQSAKDYGAMAG----LKVHSIVGGTSVGKDRNKLHRGTDILVATPGRL 138 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + M + Sbjct: 139 LDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQ-----------------INDLVPA 181 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEI 439 QT++ SAT E G + V E + L+ I Sbjct: 182 ERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMI 241 Query: 440 RQRAA----INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + ER+LV T TK A+ + + L + G +H + +R + + + Sbjct: 242 LKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRA 301 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + +L+ ++ G+D+P VS V + + IGR AR G AI + Sbjct: 302 KTPILIATDVAARGIDIPGVSHVINYELPN-----VPEQYVHRIGRTARAGKDGVAIAFC 356 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + K I + + E +G+ + G I + Sbjct: 357 AEDERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGG 416 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 +P + ++ + + +H Sbjct: 417 TNRSKPQGGNPQSAGGPVENPVKKQGTSKQKHPARK 452 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 55/454 (12%), Positives = 127/454 (27%), Gaps = 28/454 (6%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++ P + + I + + + F++ Sbjct: 20 GYKNLTPIQQEAIPV--------IRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAK 71 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + E A + + + L + + + + I++ Sbjct: 72 SSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKS-----GVVY 126 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRP 376 G + L ++V + + + L E L Sbjct: 127 GGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDI 186 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVAT 430 K QT+ SAT + + + + Sbjct: 187 EKLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEE 246 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + +LLSE+ ++VLV TK A L + L+ G + H D R + + Sbjct: 247 RKRELLSELIG-VNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALE 305 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 G+ VLV ++ GLD+P+++ V + +GR R +G Sbjct: 306 QFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFL-----PEDYVHRVGRTGRAGKSGT 360 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNE-EHGITPQGLNKKVVDILALGQNIAKTKA 608 AI + I + R+ ++ E ++ + Sbjct: 361 AISLVSPKDERFLENIEQLIERKFERIVAPGYEFNRLEASEYQEATVKRDSKNRYRAAQE 420 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 K + ++ V+ ++ + + + + ++++ Sbjct: 421 KNQNLAKKDVKIKSLSKNKTARTNSKYNNKIQKK 454 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 101/664 (15%), Positives = 204/664 (30%), Gaps = 100/664 (15%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + I+ L+ L G L S A + A++ T+++ P Sbjct: 3 TKPLIELLSKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRP 62 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKD-ASVNEHIEQMRLSA 126 A + + + + + P+ D + AS + RLSA Sbjct: 63 EEAQNVADSLSTYLWD------------PKRVLLWPAHDDLPYERIASPTQDSPFRRLSA 110 Query: 127 TKAMLE--RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + +L R +++VASV +I + + G +D A+ R+AEL Y+ Sbjct: 111 LERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSP 170 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F RG + DI+ SD + +R+ELF +EVE + LFDP T + I F+I Sbjct: 171 VASVEEVGQFSRRGGIFDIWTPSSD-LPIRLELFGDEVESIRLFDPETQRSTREIESFSI 229 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 E + + L + + +T + LE ++ Sbjct: 230 ISPYEIPV-------------AEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLP 276 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + + L DYL ++ D Sbjct: 277 AIHSIIAPYFPSGL-----GNLLDYLSEGTIVFTDLPDRLALTA---------STLRSHI 322 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G RL ++ + + ++ V G L Sbjct: 323 EGMRLEMEQSGDIPSNLLSP------VFEWSYIEDRLKALPK---IEPVNSAEGNLKFYP 373 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + ++ +D ++ +R V + T + +EH + Sbjct: 374 APQIRSSTID-IVDNLRSWIDEGRTVFIVTRHHERIRHVA---KEHNLPLAL-------- 421 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 D++ G+ ++ +++G +++LV + D + G+ R A Sbjct: 422 -----DEDVKQGQMFIV--PGSIQDGWICDDINLVVLSDTELWGY---------REPRRA 465 Query: 544 RNVNG--KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + D S + + G ++ + + G Sbjct: 466 RSPRKAPQRVFLADLQPGSYVVHVDHGVAKYVGNV------MRGSSGAEREYLVLEYAGG 519 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + P+ + D + + + + L + + A Q+ + Sbjct: 520 DRL---------YVPVDQIDRISPYIGGG--EPALSRLGTADWARTKRRAKKAADQLAKE 568 Query: 662 LHQL 665 L QL Sbjct: 569 LLQL 572 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 59/442 (13%), Positives = 130/442 (29%), Gaps = 45/442 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + N G Sbjct: 622 PMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFRSRFNPFGIRV 681 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R R + + L + +V +H + + + + Sbjct: 682 EMLSRLRTKKER------DQVLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDEEQRF 735 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + + ++ATP L+ + V D V T D + Sbjct: 736 GVK--------HKETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPV 787 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + + D ++ + I + +V + + L+E H + Sbjct: 788 YTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMP 847 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D +DVLV ++ GLD+P + + + DA G + L Q GR Sbjct: 848 EQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQ----LYQLRGR 903 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ N Y + A+ + ++R + E G + D+ G Sbjct: 904 VGRSSNR---AYAYLMYRPDARMTEDAQKR----LEAISEATQLGAGFRVAMKDLEIRGA 956 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQHAQNLEF---- 652 + + +++ + +++ + EL +L Sbjct: 957 GNFLGPEQSGHVY-------AIGLELYTQMIERAVQELRTGQPISEPPAVTIDLPIPALI 1009 Query: 653 -EEAAQIRDQLHQLRELFIAAS 673 E RD +L + S Sbjct: 1010 PEHYVSDRDTRIRLYRRLASTS 1031 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 56/381 (14%), Positives = 117/381 (30%), Gaps = 19/381 (4%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + + E + ++ LT + +++ EL G + + G+ F Sbjct: 62 APIIEKIPEKSGKVQAIVLTPTRELAIQVSEELNSLKG--DKKLHIVPIYGGQSMTQQFR 119 Query: 328 YLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + +VV I + + L E L + + + Sbjct: 120 MLKSGVDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPD 179 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA 443 + ++ SAT L + + D + E + D + + Sbjct: 180 KRMLFFSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRII 239 Query: 444 AINERVL--VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 I + V TK L + L + G LH D+ ER +I+ R + ++LV Sbjct: 240 DIEDEFYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILV 299 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +++ V + S + IGR R G AI + Sbjct: 300 ATDVAARGIDIMDLTHVINY-----SLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYR 354 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK-----AKGRGKSR 615 I +T + K+ + E + + ++ +N K + Sbjct: 355 RLTYIKKTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYP 414 Query: 616 PIVEPDNVPMDMSPKALQQKI 636 + + + + Sbjct: 415 AEKILAALLKYSFKEMFDESM 435 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 109/318 (34%), Gaps = 13/318 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + G + R + G P L +V+ + Sbjct: 73 IVLVPTRELAQQVERVARSIGKAHGKRTVVI-YGGAPMERQIAGL-KGASMVIGTPGRVM 130 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + R L E L + + Q + SAT + Sbjct: 131 DLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISL 190 Query: 404 SGGDVVDQVVR----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + + + + + + +++ + + + L+ T+R Sbjct: 191 ARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGKYLIFCNTRRKT 250 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +++ E L+++G + LH D+ R + + G+ D+LV ++ G+D+ ++ V Sbjct: 251 KNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGITHVV 310 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + + IGR R + +GKAI + + + I + +R + + Sbjct: 311 NYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIGKRIPKMEI 365 Query: 579 NEEHGITPQGLNKKVVDI 596 I + K++ DI Sbjct: 366 KNVGKIKERIDYKEISDI 383 >UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KEK5_TOXGO Length = 734 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 20/317 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ EE R Q + G + P L D L + + Sbjct: 330 AMQIYEEARKFQFGTGVRTVAVYGGSDVKRQLIDLDGGCDICVATPGRLVDLLERRKVRL 389 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF-------EALAPQT 389 + + M + L+ F LP + + + + QT Sbjct: 390 GLVQFFVLDEADRMLDMGFLPQIKLIVESFDLPPSPTPQTAGYPSLGGDSGAGRRVGRQT 449 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRA 443 + SAT + + D + G + E Q LL ++ + Sbjct: 450 VMFSATFPREIQMLAKDFLEDYIYLAVGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRET 509 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ TKR A+ + +YL + +H D ER E +R + + +LV Sbjct: 510 EKG-LTIIFVETKRKADMIEDYLVDDDFPAVSIHGDRTQQEREEALRLFKAAKCPILVAT 568 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ V+ V D + + IGR R N G A + ++ + Sbjct: 569 DVAARGLDISNVTHVINFDLPT-----NIDDYVHRIGRTGRAGNLGLATSFVNESNKPIL 623 Query: 563 KAIGETERRREKQQKYN 579 + + ++ Sbjct: 624 RDLLNLLEEAKQDIPSF 640 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 63/355 (17%), Positives = 113/355 (31%), Gaps = 18/355 (5%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + ++ K + LT + +++ EL + G+ Sbjct: 59 PCVEQVVVEEKHPQALVLTPTRELAIQVAEELNKL--GQVKGIKALPIYGGQEITRQITA 116 Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + + R + + L E L + Sbjct: 117 LKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGER 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + V ++ + D L + + Sbjct: 177 QTLLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLL- 235 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 E ++ TKR ++LTE L G V LH D+ R ++IR + G DV+ Sbjct: 236 -DMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ +VS V D + S + IGR R G + + Sbjct: 295 VATDVAARGLDVNDVSHVINFDLP-----QDSESYVHRIGRTGRAGKKGISYSFVTHKEK 349 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + I E+ R++ KQ + V ++ N A + G K Sbjct: 350 DHLRYIEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQ 404 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 104/323 (32%), Gaps = 43/323 (13%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G G + P L D++ Sbjct: 226 MIRQTCLFGGAGRGPQANDLRHLPSLVVATPGRLIDFIEGGQCP---------------- 269 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 +R L E L + + K + QT+ SAT + + +VD Sbjct: 270 -MNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMMFSATWPKEIQQLAADFLVDP 328 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G D +I ++ L + + ++++ T TKR +DL Sbjct: 329 VHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVLNEHKDD--KIIIFTKTKRTTDDLQ 386 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L G + LH D +R ++ R + +LV ++ GLD+ ++ +V D Sbjct: 387 ENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDVAARGLDVNDIDIVINYD- 445 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F + + IGR AR G A+ + +M++ + + + +++ Sbjct: 446 ----FPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKLAKIMTQAKQELP----- 496 Query: 583 GITPQGLNKKVVDILALGQNIAK 605 K + D+ G Sbjct: 497 -----DWLKALADVTPKGAWKEG 514 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 104/323 (32%), Gaps = 16/323 (4%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 LA+ + L+ + ++ + +S + G Sbjct: 62 HRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFS--TTVVFGGVTIGR 119 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L ++V + + D L E L + + Sbjct: 120 QERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLL 179 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLS 437 A Q+++ SAT + + D V + E + LL Sbjct: 180 PKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLG 239 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + +I+ RVLV T TK A+ + LE+ G +H + +R + R G Sbjct: 240 TILRDESID-RVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV ++ G+D+ V+ V D + + IGR AR +G AI + ++ Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPN-----VPEAYVHRIGRTARAGADGLAISFCNE 353 Query: 557 ITPSMAKAIGETERRREKQQKYN 579 + + I R++ + Sbjct: 354 EERAYLRDIERLTRQKVPEMAIP 376 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 102/328 (31%), Gaps = 13/328 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L + + L + +++ EL + + G+ Sbjct: 51 TGKTAAFGLPILDKLTPERNTQALILCPTRELAIQVAEELNKLA-AHKRGVAILPIYGGQ 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV + + R +A L E L Sbjct: 110 PIERQLRALAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAI 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLL 436 E + Q + SAT E S + + + L P IE + + Sbjct: 170 LEQTPASCQRVLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKM 229 Query: 437 SEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + LV TKR A+++T +L++ G + LH ++ +R +++ R Sbjct: 230 DALCRLLDSRAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRA 289 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 DVLV ++ GLD+ +V V D + IGR R G A + Sbjct: 290 EGLDVLVATDVAARGLDVDDVDAVINYDIPH-----DVEKYVHRIGRTGRAGRVGSAFTF 344 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEE 581 + I R R + + Sbjct: 345 VTMREHYKMRDIIRCTRARITEGRLPSL 372 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 57/372 (15%), Positives = 111/372 (29%), Gaps = 39/372 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE-QRLTQRT 290 F + H + +++ + E + +E+ + Sbjct: 122 QTGSGKTASFLLPAIVH-----AKAQPSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYS 176 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 G + + S P L D+L + + +++ + + M Sbjct: 177 AGFKSACLYGGASRTGQAEALGQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRM 236 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + QT+ SAT + + D Sbjct: 237 LD-----------------MGFEPSIRRVVSQVRPDRQTLMWSATWPREVKALAEDFLYD 279 Query: 411 QVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G + +E+ + + LLS + N RVLV T TK+ ++L Sbjct: 280 YIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLNSF--DNARVLVFTETKKRTDEL 337 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L++ G +H D ER + R G VLV ++ GLD+ +V + D Sbjct: 338 CQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVLVATDVASRGLDINDVRYIINYD 397 Query: 523 ADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 I IGR R+ G A + P +A+ + E + + Sbjct: 398 YP-----SQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARELIEVLKEARQTIPDELF 452 Query: 582 HGITPQGLNKKV 593 + + Sbjct: 453 KIAEGYYVERTR 464 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 123/434 (28%), Gaps = 32/434 (7%) Query: 217 FDEEVERLSLFDPLTGQI---VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 FDE++ T +P + A + + Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 LE + + ++ E N G L Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRS--VAVYGGGSMWEQAKALQEGA 377 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + R E + + QT+ Sbjct: 378 EIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLF 437 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + ++D + G + I+E+ + L+ Sbjct: 438 SATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTS 497 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + VL+ K AE+L L++ G + LH D+D ER ++I D + + VLV ++ Sbjct: 498 SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV 557 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 GLD+P + V D R + IGR R G A + A Sbjct: 558 AARGLDIPSIKTVINYDV-----ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + + ++K+++D+ K++ KG + + + Sbjct: 613 LVRNLEGANQ-------------HVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLG 659 Query: 625 MDMSPKALQQKIHE 638 P + + Sbjct: 660 YRERPGLGSENMDR 673 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats. Identities = 65/383 (16%), Positives = 114/383 (29%), Gaps = 18/383 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + + T+ + E G + G Sbjct: 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV I + R L E L + + Sbjct: 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVDDL 435 Q SAT + S + D T + + I + + D Sbjct: 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDA 240 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L+ + E ++V TK+ E++ E L G + D+ +R I LR G Sbjct: 241 LTRVL-EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDG 299 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + D+LV ++ GLD+ +S V D S + IGR R G A+++ Sbjct: 300 DIDILVATDVAARGLDVERISHVLNYDIPH-----DTESYVHRIGRTGRAGRSGAALIFV 354 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + KAI + R+ + + + Q + K N G Sbjct: 355 SPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAK----FADSITNALGGP--GIELF 408 Query: 615 RPIVEPDNVPMDMSPKALQQKIH 637 R +VE D+ + + Sbjct: 409 RRLVEEYEREHDVPMADIAAALA 431 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 60/370 (16%), Positives = 114/370 (30%), Gaps = 23/370 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + N + + T+ + + G + + G P L Sbjct: 550 LRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSC-TCLYGGAPKGPQLKELT 608 Query: 331 ADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + + L E L + + K QT Sbjct: 609 RGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 668 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIR 440 + +AT + + +V+ V G +D +EV P + L +I Sbjct: 669 LMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRL-GQIL 727 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V++ TKR+ + L + H +H D ER ++ R G+ +L Sbjct: 728 RAQERGSKVIIFCSTKRLCDQLARSIG-HQFGAAAIHGDKSQGERDWVLNQFRSGKSPIL 786 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI-LYGDKIT 558 V ++ GLD+ ++ +V D F + IGR R G + + T Sbjct: 787 VATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTGRAGATGVNVAAHMIATT 841 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLN---KKVVDILALGQNIAKTKAKGRGKSR 615 M + E ++K E GI + + + ++ + + Sbjct: 842 IWMVVDVDVEEEGLMVEEKLLTEVGIEVLAVVLKDRSRSRSYDRFERPRVSRFDEKDVTA 901 Query: 616 PIVEPDNVPM 625 P E M Sbjct: 902 PGSEAPESGM 911 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 93/630 (14%), Positives = 180/630 (28%), Gaps = 82/630 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + G+ ++ A + QRP ++L PN + E + F P+ Sbjct: 22 IYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPA------------P 69 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MM 158 P + + RL+ + E R V +A +SA+ P +L Sbjct: 70 LVFPDREILPYDRLAPPADATATRLATLATLPEWR-GVCLAPLSAVLQRLPPRSFLDQHA 128 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L VG + +RL + Y + + G RG +ID+FP+ S + R+ELFD Sbjct: 129 FVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGS-PLPYRIELFD 187 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 VE + FDP T + + + ++ P + + + + Sbjct: 188 RVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGD-------- 239 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + G E+Y L + P DG++ + Sbjct: 240 ---------PQRAEIYRAASRGQAPQGAEHYLPLFFPECS-----HLLMHFPVDGVVFL- 284 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + R E D L E+E + V Sbjct: 285 -PPGLEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEG 343 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 P+ ++ L + RV++ + Sbjct: 344 DAERL--------------PTAPLPDLHGSPEAPLASLDTFLRHLPTTGRVILAAESPGR 389 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE---V 515 E L+E L + G +H + G + + + L GL + E V Sbjct: 390 QEALSERLGKSGLLPSRVHD----------WPEFLAGTERIAITVAPLERGLLIKENGLV 439 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 L + +A G R Q AR + + ++ + Sbjct: 440 RLALVSEAQIFGD----RVFAQRRSANARQRSIEGLV----RDLGELQPGDAVTHEEYGI 491 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 ++ + + + A G P D + + A + Sbjct: 492 GRFQGMATPFASQGDI--------NEYVVLEYANGDLVYVPADHLDRIARYVGNGATEPV 543 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + L + + ++A +L + Sbjct: 544 LSRLGSNHWEKVKAKARQKAVDAASELLDI 573 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 60/417 (14%), Positives = 119/417 (28%), Gaps = 37/417 (8%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P Q + + + +P V + ++ A + Sbjct: 605 PDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPTTLLA 664 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + G+ LS + + + + ++ +H + + Sbjct: 665 QQHYENFRNRCA------GLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTHRLLQK 718 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + + +G R + + ++ATP L S Sbjct: 719 DVAFHDLGLLILDEEHRFGVRQKER--------IKALRAEVDILTLTATPIPRTLNLSLA 770 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T V D ++ ++ +V R E + Sbjct: 771 GLRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAAT 830 Query: 466 LEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L R H + E ++ D FD+L+ ++ G+D P + + I A Sbjct: 831 LRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRA 890 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ Y TP +A+ + RRR + E+ G Sbjct: 891 DKFGLAQ----LHQLRGRVGRSHQR---AYAYLFTPD-LRAMSDDARRRLDAIQSLEDLG 942 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G D+ G + + D V + + L + + Sbjct: 943 V---GFALASHDLEIRGAGELLGEEQSG-------HMDEVGFTLFMEWLDDAVEAIR 989 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 57/398 (14%), Positives = 115/398 (28%), Gaps = 31/398 (7%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ N+ + + ++ E S + G L Sbjct: 1555 QPPLQENEGPIGIIMAPARELAQQIYVEARKFSKGLGLRA--TAVYGGSSVSEQIANLKR 1612 Query: 332 DGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +V+ I G M R L E + + K Sbjct: 1613 GSDIVICTPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRPDR 1672 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + V G + +EVR + LL + Sbjct: 1673 QTLLFSATFPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMRLLQLLG 1732 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +LV ++ + + + L + G LH D V+R I D + V+ Sbjct: 1733 LWYEKGN-ILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVRTVM 1791 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ ++ LV + +GR R G A + Sbjct: 1792 VATSVAGRGLDVKDLVLVINYHCPNH-----MEDYVHRVGRTGRAGRKGTAYTFISPDEE 1846 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-------GQNIAKTKAKGRG 612 + + + ++ E +G KV A G+ + + Sbjct: 1847 EYSVDLVKALENAKQTI--PPELTALAEGFTAKVKRGEARYHGSGFKGKGFTFDETER-N 1903 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHEL-EGLMMQHAQN 649 +++ + ++ L + + + M + ++ Sbjct: 1904 ETQRTADLQRRQYELDQGILVEDSGAVDDDDMEEPSKE 1941 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 98/358 (27%), Gaps = 34/358 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + + + L L +R + Sbjct: 46 QTGTGKTAAFALPLLDRLIKNPRQ-GKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAM 104 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + G + P L D + + + + + + M Sbjct: 105 QNSLTI-YGGVSQVPQVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRML 163 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT+ SAT + + + D Sbjct: 164 DM-----------------GFMPDIRRIIAKLPQQKQTLLFSATMPPEIQKLASQLLHDP 206 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V + + P + + L S +++ R +V TK Sbjct: 207 VEINIEPERATADGITQSLYYVPTKHKPELLASVLKREEVT--RAVVFVRTKHGCNKAAL 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 LE+ G +V +H + R + + G VLV ++ GLD+ VS V D Sbjct: 265 QLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLVATDVAARGLDVTGVSHVINYDLP 324 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 E + + IGR R +G AI + D + + + ++ + + Sbjct: 325 ME-----PETYVHRIGRTGRAGKSGIAISFCDDEQRGLLRDVQRILGKKIPVENEMPD 377 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 65/419 (15%), Positives = 121/419 (28%), Gaps = 20/419 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + T+ + + E G + G Sbjct: 57 TGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGA 116 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + I L E L + Sbjct: 117 DMRQQLKSLREGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTI 176 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLL 436 + SAT + + + + + IE + L Sbjct: 177 LAKTPKERKVALFSATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKL 236 Query: 437 SEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ E V+V T T+ + E L + G + L+ D+D R+ + DL+ Sbjct: 237 EALKRLLAFEDTEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKS 296 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G DVLV ++ GLD+ ++ V D E + + IGR R GKAIL+ Sbjct: 297 GALDVLVATDVAARGLDVERITHVINYDVPF-----DEEAYVHRIGRTGRAGRKGKAILF 351 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQG-------LNKKVVDILALGQNIAKT 606 M + I R+ + K I + + + D + Sbjct: 352 VVPRERRMLRNIERLTRQSIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIID 411 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI-RDQLHQ 664 R I + + K + E ++ E++++ R + Q Sbjct: 412 TLNKDSDYRSIAVALAGMLHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQ 470 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 225 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 63/414 (15%), Positives = 116/414 (28%), Gaps = 50/414 (12%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P ++ I + V F + TP ++ Sbjct: 26 PIQAQAIPV--------VMEGHDLMASAQTGTGKTAGFMLPALNLLATP----HESRSRG 73 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L ++ E R + + G ++N P Sbjct: 74 PRILVLTPTRELA-AQVNEAARKYGKFLRARTVSIVGGMPYPLQNKLLSQPLDILVATPG 132 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ + + + + + M + E Sbjct: 133 RLLDHMERGRIDLSRLQMLILDEADRMLD-----------------MGFLPDVERICEQL 175 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 + QT+ SAT + + + ++ + T + LL Sbjct: 176 SAERQTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLL 235 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + A + ++ T TKR A+ L E L G + LH D+ R + LR G+ Sbjct: 236 EHLL-IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGD 294 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VLV ++ G+D+ ++ V D K + IGR R N G AI + Sbjct: 295 VKVLVATDVAARGIDVHGITHVINYDLPKF-----AEDYVHRIGRTGRANNTGIAISFAS 349 Query: 556 KITPSMAKAIGETERRREKQ------QKYNEEHGITPQGLNKKVVDILALGQNI 603 + + + I + R + + P G + G Sbjct: 350 NMDRHLLRKIEQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFK 403 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 92/325 (28%), Gaps = 17/325 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +++ + T+ + + + G+ Sbjct: 50 TGKTAAFGIPAIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQ 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV + + + R L E L + Sbjct: 110 PIERQIQLLKRGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEI 169 Query: 380 EEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQ 431 QTI SAT + + + D V I+ + Sbjct: 170 LSLMPSERSYQTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGK 229 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L + E ++ TK+M ++L L +H + LH D+ R ++ Sbjct: 230 KANALRVLLNHYD-PELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQ 288 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R G +L+ ++ G+D+ +V LV D + I IGR R G A Sbjct: 289 FRSGSMPILIATDVAARGIDVDDVDLVINFDIP-----QDNEYYIHRIGRTGRAGKKGLA 343 Query: 551 ILYGD-KITPSMAKAIGETERRREK 574 I S K I + K Sbjct: 344 ITLISGGRQRSELKNIMRYTKTNIK 368 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 110/340 (32%), Gaps = 15/340 (4%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E ++ + L + +++ EL + N + G+P L + Sbjct: 69 EKRRVPQALILAPTRELAIQVNEELVRIAK--NMRLNILPIYGGQPIDRQLRALRNGVDI 126 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + + + L E L + + + QT+ SA Sbjct: 127 VVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLFSA 186 Query: 395 TPGNYELEKSGGDVV-DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRA--AINER 448 T + S + D + I + D + + E Sbjct: 187 TMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEPEA 246 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+ ++L ++ G V +H D++ +RM ++ + D LV ++ Sbjct: 247 AIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVAAR 306 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ V+ V D + S + IGR R GKA + K I + Sbjct: 307 GIDVENVTHVINYDLP-----QDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEK 361 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 T + + K+ I + + +N +K Sbjct: 362 TTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSK 401 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 95/359 (26%), Gaps = 33/359 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F++ + L L + + T Sbjct: 146 QTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHT- 204 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D++ Sbjct: 205 PLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQ-----------------KTA 247 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + L E L + QT+ SAT + + + + Sbjct: 248 NLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNP 307 Query: 412 VVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + I+ + ++ IR R+ ++V+V +K A L Sbjct: 308 QTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSL--KQVIVFCNSKIGASRLAR 365 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E G +H D ERM+ + + GE + LV ++ GLD+ E+ V D Sbjct: 366 QIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLP 425 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + IGR R +G A+ I + +R + + Sbjct: 426 F-----NAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRTLSLETLELDL 479 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 65/414 (15%), Positives = 124/414 (29%), Gaps = 28/414 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A ++ + + + T+ + E + G+ Sbjct: 61 FALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL 120 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +VV I + R + L E L + + Sbjct: 121 SALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPE 180 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 + QT SAT + + + D + + + ++D L Sbjct: 181 SRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRI 240 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A + +++ TK E+L L+ G ++ DI +R I+ L+ G+ D Sbjct: 241 L--EAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKID 298 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ +S V D S IGR R G+AIL+ Sbjct: 299 ILVATDVAARGLDVERISHVINYDVPH-----DPESYTHRIGRTGRAGRSGEAILFIAPR 353 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS--- 614 ++ KAI R+ + + +++ I + Sbjct: 354 ERNLLKAIERATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYER 413 Query: 615 ---RPIVEPDNVPMDMSPKA---LQQKIHELEGLMMQHAQNL---EFEEAAQIR 659 P VE ++ L K +E+ + + FE A + Sbjct: 414 EHNVPAVEIAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFE 467 >UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7_9CRUS Length = 843 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 54/362 (14%), Positives = 109/362 (30%), Gaps = 29/362 (8%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + + + + + E K E+ ++ E R Sbjct: 458 GKTAAFLVPVVNILLEKQVQGAPSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKS 517 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 ++ G + S P L D++ + + + + M Sbjct: 518 VIVYGGTQVSHQKSSLMNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGF 577 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + T+ SAT + + +G + D V Sbjct: 578 GSDIEFIAQHPTMTP-------------VGRRVTLMFSATFPDDVQKIAGKYLHDYVFVT 624 Query: 416 TGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 TG + + + L+ +R N RV+V +K+ A+ + +L Sbjct: 625 TGNIGGMNPDVCQEFHEVQRQDKRNKLVEILRDL--GNSRVIVFVESKKTADFIAAFLAN 682 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 + +H D +R + +R+ + G+ ++LV N+ GLD+ V V D Sbjct: 683 TQFQATSIHGDRLQSQREQALREFKSGQRNILVATNVAARGLDIAGVEYVINYDLP---- 738 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + IGR R G++I + D A +R + + Sbjct: 739 -ADIEEYVHRIGRTGRVGNAGRSISFYDP-DRDAPNAGRLVQRLVASEADVPSFLQSSVS 796 Query: 588 GL 589 G+ Sbjct: 797 GV 798 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 73/432 (16%), Positives = 128/432 (29%), Gaps = 45/432 (10%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 F + + P R + + + L E + Sbjct: 46 TGTGKTLAFALPIIQNLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGP---Q 102 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G G + + P L D+L L + + + + M Sbjct: 103 LSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLS 162 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 A + A QT+ SAT + + + + V Sbjct: 163 VGFADAIE-----------------TILQQTPAARQTMLFSATLNDEIHRLARKYLREPV 205 Query: 413 VRP-TGLLDPIIEVRPVATQVD------DLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 V G +V +L+++ E+ +V T TKR A++L Sbjct: 206 VVDLVGEGKSQAAQSVEHLKVKVGRTRTRVLADLL-TVYNPEKAIVFTRTKREADELANE 264 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G LH D+ +R + R G VLV ++ GLD+PEV LV Sbjct: 265 LIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLP- 323 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + S + GR R G AI+ + + + K++ Sbjct: 324 ----QDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEYRTGVQFKERPLPT---- 375 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--L 642 K+V A K + E + + ++ +AL + + ++ G Sbjct: 376 -----PKEVQAASARASADLVRKVDSGVAATFQAEAERLFSELGLEALARALAKISGVTE 430 Query: 643 MMQHAQNLEFEE 654 +Q A L EE Sbjct: 431 PVQAASLLSGEE 442 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 66/406 (16%), Positives = 113/406 (27%), Gaps = 44/406 (10%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P ++ I + +E + F + R R Sbjct: 82 PIQARSIPVMLE--------GHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRACR- 132 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L + + T+ + ++ G G + P Sbjct: 133 --ALVLAPTRELATQIADAARTYGKFTRPSVAVVI-GGAKPGPQARRMESGVDLLVATPG 189 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ A + + V + + M Sbjct: 190 RLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQ-----------------IMAKL 232 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLL 436 Q + SAT +G + D P +D + + + D L Sbjct: 233 PRQRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLA 292 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + A R +V T TK A+ +T +LE+ G +H + +R + R G Sbjct: 293 WLLADVAVE--RAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGR 350 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 VLV ++ G+D+ VS V + S + IGR AR G AI + Sbjct: 351 IRVLVATDIAARGIDVDNVSHVVNFELPN-----VPESYVHRIGRTARAGAEGVAISLVE 405 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 + I R G+ P L + + GQ Sbjct: 406 PSELPYLRDIETLIGRHLVPGGAQPVRGLAPPHLLRARNQVARQGQ 451 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 112/688 (16%), Positives = 207/688 (30%), Gaps = 121/688 (17%) Query: 28 LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 + + GS +A A P +++A N A +L E+ F P+ V Sbjct: 40 FSSKHSRPRYSNLQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVH 98 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------------L 131 +P +T S ++ + RL+ + Sbjct: 99 L-------------LPDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPA 145 Query: 132 ERR-------------DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 R DV+VV +A+Y L L G +D A +++ Sbjct: 146 SGRGSERENQSSTSACDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTL 205 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y Q G + VRG +ID+F S + R++LFD+E+E ++ FD T + + + Sbjct: 206 AGYNHVQQVLTPGEYCVRGGIIDLFAMGS-VLPYRIDLFDDEIETIATFDVDTQRTLYPV 264 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P + P + + + ++ + ++ Sbjct: 265 PEIRLLPAREFPLDEKGQATFRQNFRDRFEGDPSKSR-----------------IYKDVS 307 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + +GIE Y + TLFDYLP L + H + + + D A + Sbjct: 308 KGIAPAGIEYYLPLF-----FDQTATLFDYLPKIATLCL---HHNVDEAITSFGKDAASR 359 Query: 359 ETLVEYGFRLP------SALDNRPLKFEEFEALAPQTIYVSATPGNYEL-----EKS--- 404 L+ + P LD E I SA L S Sbjct: 360 YNLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLPEGEGNLSSLS 419 Query: 405 -------GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 D + T + PI R +R A RVL+ + Sbjct: 420 PGEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYA---GRVLLLAESLG 476 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E ++ YL+E+G E G+ ++G+ ++ G +P+ L Sbjct: 477 RREIMSGYLKEYGLTPAV----------CEDYASFLAGQDKFMLGVGPVQIGFSLPDEQL 526 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + + RAAR ++ + + + Sbjct: 527 AIVTETELYAAQPRS-----RANRAARKS-------------NVEGMLRDLSELKPGDPV 568 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 +E+HGI + + + A P+ + + A +H Sbjct: 569 VHEQHGIARYRGLVNLDLGEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLH 628 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +L A+ ++ +L + Sbjct: 629 KLGSGAWDKAKRRAMQQVRDTAAELLNI 656 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 60/438 (13%), Positives = 122/438 (27%), Gaps = 45/438 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q Q + Sbjct: 706 PMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFAD----- 760 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + L L +V +H I + + + Sbjct: 761 -WPIRIAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEE--- 816 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L S + D V T + Sbjct: 817 -----HRFGVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSI 871 Query: 425 VRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V+ + + + +V ++ E LE R H + Sbjct: 872 KTFVSGFSQGVIREAVLRELKRGGQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMG 931 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++RD F+VL+ ++ G+D+P + + + AD+ G + L Q GR Sbjct: 932 ERDLEAVMRDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRADRFGLAQ----LHQLRGR 987 Query: 542 AARNVNG-KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R+ + A L D + + ++R + + E+ G G + D+ G Sbjct: 988 VGRSHHQAYAYLLVDSMDG-----LTAQAKKRLEAIQAMEQLG---SGFFLAMHDLEIRG 1039 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLE-------F 652 +++ E + + L I L+ G L Sbjct: 1040 AGEVLGESQSG-------EMQEIGFSLYNDMLAAAIASLKQGKEPDMTHPLGVTTEINLH 1092 Query: 653 EEAAQIRDQLHQLRELFI 670 A D + + I Sbjct: 1093 TPALLPNDYCGDIHQRLI 1110 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 105/626 (16%), Positives = 175/626 (27%), Gaps = 78/626 (12%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + + + F ++ + P +V+ A L E++E Sbjct: 10 DVVAFAGAAGRPDLTVTAVDGARPFLLSALAGQA--PVLVVTATGREADDLTSELRETLG 67 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD------- 135 +AV F PS +T + S RL + + D Sbjct: 68 ADAVTQF-------------PSWETLPHERLSPGADTVGRRLQVLRRLAWPDDAQYGAPL 114 Query: 136 VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVA+V ++ P L + L G D ++ L EL Y R D +RG F V Sbjct: 115 RAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAV 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DIFP +D + +RVE + +E+ L F + + T++ Sbjct: 175 RGGILDIFPTTTD-LPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVYPC------- 226 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 EL V L E LE + + G+E L Sbjct: 227 ---------RELLLTADVRDRAATLKAEHESDAALAEMLEKLAQGIPVEGMEALIPALVP 277 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 L D L + T G P Sbjct: 278 GELQLLTDVLPDGTHTVLLDPEKIRTRAADLA-RTGQEFLEASWTAAALGSSAPLDPSGI 336 Query: 376 PLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L + L VSA + + G D + R + + Sbjct: 337 DLGASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTV-HAEHAPAPRGSEAEAE 395 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + +R AA ++ + + E L + L E R Sbjct: 396 KLFATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASEL----------EAGEGPR 445 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-----GRAARNVNG 548 G VL G L+ GL +P LV + + D G + GR Sbjct: 446 PGTVGVLRGS--LQTGLTVPSQQLVLLAEPDLTGN---------RVAGVGDGRRLPAKRR 494 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + + + + T G ++ + I +K Sbjct: 495 NQVDPLALTAGDLVVHDEHGIGKFVEMIER------TVAGARREYLVIEYA---PSKRGQ 545 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQ 634 G P+ D + + + +Q Sbjct: 546 PGDKLFVPMESLDQLSRYVGGEMAKQ 571 Score = 93.7 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%) Query: 461 DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 ++ + + + R + H + ++ EFDVLV ++ GLD+ + + Sbjct: 567 EMAKQIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTL 626 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + A+ G + L Q GR R+ + K + ET R Sbjct: 627 IVERAENLGLSQ----LHQLRGRVGRSRERGYAYFLYPSE----KPLTETAYDRLSTIAQ 678 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 N E G G+ + D+ G + V D+ + + + + Sbjct: 679 NNELG---AGMAVAMKDLEIRGAGNVLGAEQSG-------HVAGVGFDLYVRLVGEAVEA 728 Query: 639 LEGL---------MMQHAQNLEFEEAAQI-RDQLHQLRELFIAA 672 Q ++ A I D + R A Sbjct: 729 FRAAADGTPITLPEEQKEVRIDLPVDAHIPPDYVTSDRLRLEAY 772 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 101/324 (31%), Gaps = 12/324 (3%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + T+ + + G + G L Sbjct: 148 KRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAYSGQIRALKKG 207 Query: 333 GLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + I L E L + E QTI Sbjct: 208 VQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILEATPAHRQTIM 267 Query: 392 VSATPGNYELEKSGGDVVDQVVRPT----GLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 SAT + + D +D + + LL ++ Sbjct: 268 SSATWDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFDHKNKLLEQLICDPERG- 326 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + ++ T TKR +E++ E L++ + YLH D+ +R I+ DLR G+FD++V ++ Sbjct: 327 QAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDVAA 386 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+P ++ V D R + IGR+ R G AI + I Sbjct: 387 RGLDLPNITHVFNYDLP-----RQVEDYVHRIGRSGRAGRTGIAINLCSRDDRRQFGNIA 441 Query: 567 ETERRREKQQKYNEEHGITPQGLN 590 +R + + + Sbjct: 442 RYLKRDINEAQVEGLEPRFVEKFE 465 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/448 (14%), Positives = 130/448 (29%), Gaps = 49/448 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F+I + + L L + + + Sbjct: 47 QTGTGKTLAFSIPLINKLILDKNAF---------ALVMCPTRELATQVMEAIKSIISDKI 97 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + R P + D+L L + ++ + + M Sbjct: 98 NIKTALLIGGESMQKQLRQLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRML 157 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + +F QT+ SAT L S + Sbjct: 158 DMGFTPQIEM-----------------VLKFVPKDHQTLLFSATLPQNILRISERYLHKP 200 Query: 412 VVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 TG + + D+L+ Q A +LV TKR A+ + + Sbjct: 201 ERISTGATSVPIAKIKQETLQVFKENKYDELID---QFLARKGSILVFVKTKRSADKMVK 257 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L+E G +H D+ +R +I R G +L+ ++ GLD+P + V D Sbjct: 258 RLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVAARGLDIPLIQHVINYDLP 317 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ----QKYN 579 + + IGR AR + G A+ + SM +I + K + + Sbjct: 318 -----QVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWNSINKLIDPNFKAVPSGLRRD 372 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-- 637 ++ +G N K ++ K + R + + P +K Sbjct: 373 SKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSSFRNKPKSYDKSRSGKPPRDGEKKSFG 432 Query: 638 -ELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + ++ + + + + Sbjct: 433 FKGKSSFRDKPKSYSKDRSQRPSRDGEK 460 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 101/318 (31%), Gaps = 15/318 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K + L + +++ EL E S + G+P L +V Sbjct: 71 KKKSPKALILAPTRELAIQVNEELVRLGKHEKLS--VLPIYGGQPIDRQIRALKNGVDIV 128 Query: 337 VDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I + L E L + + + QT+ SAT Sbjct: 129 VGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSAT 188 Query: 396 PGNYELEKSGGDVV-DQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINE--RV 449 + + + D + E + D + + +E Sbjct: 189 MPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAA 248 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TK+ +++ E ++ G V +H D+ R++ +R + G D LV ++ G Sbjct: 249 IIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARG 308 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 +D+ V+ V D + S + IGR R G A M K I + Sbjct: 309 IDVESVTHVINYDLP-----QDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKH 363 Query: 569 ERRREKQQKYNEEHGITP 586 + + ++ I Sbjct: 364 TKSKIIRKAVPTVDEIFQ 381 >UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X9Q1_CAEBR Length = 653 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/423 (15%), Positives = 120/423 (28%), Gaps = 45/423 (10%) Query: 165 MIIDQRAILRRLAELQYARNDQ--AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 I+Q +L+ + + + ++ G DD+ + LF + Sbjct: 185 ERIEQELFAGQLSGINFDKYEEIPVEATG----------------DDVPQPIGLFSDLSL 228 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + D ++ L L E Sbjct: 229 HEWIED-NIKTAGYDRQHQFRNGPDAVHRSVISSGGRKKQYPSALVLSPTRELSLQIYNE 287 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 ++ RT ++ + + L P L D + + + ++ Sbjct: 288 SRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLLDVMEQGLIGLEGCRYL 347 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M + V R+P T SAT Sbjct: 348 VLDEADRMLDMGFEPQIRQVVEFNRMPPK-------------EERVTAMFSATFPKEIQL 394 Query: 403 KSGGDVV-DQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + + V G + E V + L ++ + LV T Sbjct: 395 LAQDFLKQNYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVET 454 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A DL YL +V +H D+ ER + + R G +LV + GLD+P V Sbjct: 455 KRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNV 514 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 V D + IGR R N G A + + ++A+ + + + Sbjct: 515 KHVINYDLP-----SDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQ 569 Query: 575 QQK 577 + Sbjct: 570 ELP 572 >UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana RepID=Q4W7T8_ARTSF Length = 726 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 54/405 (13%), Positives = 115/405 (28%), Gaps = 32/405 (7%) Query: 196 RGEVIDIF--PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 R +++D + ++ + + + + I + Sbjct: 312 RPKILDNIKKSGYTQPTPVQ-KWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINRLIEEG 370 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 E E ++ +E ++ G ++ Sbjct: 371 CAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDTIIKPVVVYGGVAPRYQSDKVKS 430 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D++ + + + M + V Y +P Sbjct: 431 GCNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMGFMGEVKKVVYHGTMP---- 486 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVR 426 + T+ SAT N E + + + + G + + Sbjct: 487 ---------VKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEI 537 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 +++D LL + + + LV +K+ A+ L L +H D +R Sbjct: 538 DAKSRIDRLLEILTE--KEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQRE 595 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 E++RD + G ++LV + GLD+ V LV + + IGR R Sbjct: 596 EVLRDFKSGHRNILVATAVAARGLDIKGVGLVINYELPT-----DIDEYVHRIGRTGRLG 650 Query: 546 VNGKAILYGDK-ITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 G AI + + ++A + ++ E + Sbjct: 651 NTGHAISFFNPDKDSAIAGKLVNVLAAAQQTVPVFLESMASGVSF 695 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 108/357 (30%), Gaps = 12/357 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A LE+ + + + T+ + + + + G Sbjct: 119 TGKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGT 178 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + L +VV + + L E L + Sbjct: 179 DFRSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWI 238 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLL 436 E Q + SAT S + D D +I R + + L Sbjct: 239 LEQLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKL 298 Query: 437 SEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ E V++ TK + + E LE G +V L+ D+ +R + LR Sbjct: 299 EALQRVLDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRS 358 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G DVLV ++ GLD+ + LV D + + IGR R G+A+L+ Sbjct: 359 GSVDVLVATDVAARGLDVERIGLVINYDMPF-----DSEAYVHRIGRTGRAGRTGEAVLF 413 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + + + I L++ + +A +G Sbjct: 414 MTPRERRFIRNLERATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEG 470 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 98/665 (14%), Positives = 211/665 (31%), Gaps = 70/665 (10%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 Q + + + L G+ I + +++ N+ Sbjct: 2 KLTEIVAQDKELGAFLINTQKNKKS-LLTGINE-RNLPLILLELLKQNNVLIIIEENENK 59 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +L + PE V+YF T + A+ + R+ A Sbjct: 60 AQRLVDNLAPILPEEKVQYFAVDS-------------TLATQRATASPDELAQRIKALHL 106 Query: 130 MLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L +VV + + Y L D Y++ + VG D + + + L Y + Sbjct: 107 LLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVASGYRKEALVA 166 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 + G F VRG+++DI+P +R+E F +EV+ + FD T + + + P Sbjct: 167 KPGEFAVRGDILDIYPL-DQVSPIRIEFFGDEVDTIKSFDVNTQKSILEKEEIVVLPACD 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + +A IK+E+ E Q LE+++EL + +N Sbjct: 226 RIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLDELAQGNLPDN 272 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y+ +L YLP +GL+V ++ + + ++ G L Sbjct: 273 YA--FLVDYLLPKSCSLLSYLPENGLVVFNDWQAIKKADSEITDQNADFISDEIKAGLML 330 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 S L ++ + G +L P E Sbjct: 331 NSQKLRMNLTTVLRQSKHHRLYLSLFQKGMGQLRFDSLFNW-----------PNREPEQF 379 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + SE+ + V++ +R ++ + L + + + Sbjct: 380 FSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNLPIV-----------T 428 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 +L + + V +G +P++ LV + + + ++ I + A R Sbjct: 429 KENLVEHKLQITV--GQFSQGFSLPQIQLVYLTERELFNTQVHKKRKILNLENAQR---- 482 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + K ++ + G + + I G + A Sbjct: 483 -------LRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHDQLFVPA 535 Query: 609 KGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + + + ++ + A +L AA+ ++ Sbjct: 536 DQLSLVQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAARESEKGFAF 595 Query: 666 RELFI 670 +++ I Sbjct: 596 QKIMI 600 >UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Tax=Coelomata RepID=DDX4_HUMAN Length = 724 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 53/345 (15%), Positives = 108/345 (31%), Gaps = 39/345 (11%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + +EL +++ + L Q + + Sbjct: 333 QTGSGKTAAFLLP-----ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARK 387 Query: 292 F-----DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 F ++ G G P L D + + + + ++ + + Sbjct: 388 FSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDE 447 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M + + +PS QT+ SAT + Sbjct: 448 ADRMLDMGFGPEMKKLISCPGMPSK-------------EQRQTLMFSATFPEEIQRLAAE 494 Query: 407 DVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + G + + ++ + L+ +R +ER +V TK+ Sbjct: 495 FLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI--GDERTMVFVETKKK 552 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ + +L + +H D + ER + + D R G+ VLV ++ GLD+ V V Sbjct: 553 ADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHV 612 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 D + + IGR R G+AI + D + + Sbjct: 613 INFDLP-----STIDEYVHRIGRTGRCGNTGRAISFFDLESDNHL 652 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 99/369 (26%), Gaps = 34/369 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ T + L L ++ E R + Sbjct: 46 QTGTGKTAAFTLPMLHKLSTGASATNKFGGIGIRALVLTPTRELA-AQVEESVRTYGKYL 104 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D L + + + + M Sbjct: 105 ELDSTVIFGGVGMNPQISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRML 164 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 K Q++ SAT + + + + + Sbjct: 165 DMGFIH-----------------DVKKILALVPKEKQSLLFSATFSDEIRDLAATLLKNP 207 Query: 412 VVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + ++ + LL+ I +VLV T TK A + E+ Sbjct: 208 QSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHIINE-NKWSQVLVFTRTKFGANSVAEF 266 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L ++G LH + R + + + G+ LV ++ G+D+ E+ V + Sbjct: 267 LTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALVATDIAARGIDIDELPHVVNYEIPN 326 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR R +G+A+ + + I + + G Sbjct: 327 -----VSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFMQEIERFTK---QTIPVQFVEGF 378 Query: 585 TPQGLNKKV 593 P+ + Sbjct: 379 GPEEGERAE 387 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 94/652 (14%), Positives = 206/652 (31%), Gaps = 69/652 (10%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 ++ G Q L+ + G ++ ++A +I + ++++ + A L E+ + V Sbjct: 11 SVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDV 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P +T S ++ + RL + V+ ++ + Sbjct: 71 NL-----------CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLM 119 Query: 147 GLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 120 VRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPT 179 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+ELFD+E+E + FD T + + + P + T I + + Sbjct: 180 GCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRR 238 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +++ + ++++ +GIENY +L Sbjct: 239 RFEV----------------ISKEAESVYQLVSRNLMPAGIENYLPLFFDDTA-----SL 277 Query: 326 FDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 FDYLP + + + D + ++ R+ + + F F+ Sbjct: 278 FDYLPENTQLITLGDIDKACANHLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFK 337 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV---ATQVDDLLSEIR 440 ++ + + V + L + P ++ L ++ Sbjct: 338 PYKRSQFFI---HTPGDAQLGEDGTKKDVAKKDSALQANVAPLPDINANHKLKQPLESLQ 394 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A + +L + ++ E L L + G + E ++ L+ ++ Sbjct: 395 AFAQDGKPLLFSAESEGRREALLALLSKIGIKPTLF---KHLDEFLDASVPLKGPVHGLI 451 Query: 501 VGINLLREG---LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY-GDK 556 V L G LD P+ L I + + G I + R K + Sbjct: 452 VS--PLSRGCTLLDSPKGELSLICETELFG---------HKIAQQRRRDKQKQVSSDALI 500 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K Y + GL + + + G + Sbjct: 501 KDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSSL----- 555 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + + ++++L A+ E+ + +L + Sbjct: 556 ----HLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELLDVYAR 603 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 116/399 (29%), Gaps = 35/399 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 V + ++ A + Q + + + + Sbjct: 650 SMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFAD--WPV 707 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF S + + L + +V +H + + Sbjct: 708 EIEVMSRFRSA----KEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEE--- 760 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + + ++ATP L + + D + T + Sbjct: 761 -----HRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAV 815 Query: 425 VRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + + + +V E + L + R + H + Sbjct: 816 KTFVREYHQATIREALLREILRGGQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMR 875 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D F+VLV ++ G+D+P + + I ADK G + L Q GR Sbjct: 876 ERDLEKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQ----LHQLRGR 931 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y ITP + K I R+R + EE G G D+ G Sbjct: 932 VGRSHHQ---AYAYMITPPI-KLISTDARKRLEAIDALEELG---AGFMLATQDLEIRGA 984 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + L+ + L+ Sbjct: 985 GELLGDEQSG-------HISKIGFSLYMEMLESAVSALK 1016 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 53/412 (12%), Positives = 104/412 (25%), Gaps = 37/412 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E+ F + + + ++ L L + Sbjct: 34 EIMLNKHVLASAQTGTGKTAAFVLP-----ILDKLTKNRSEGRGPRVLIVSPTRELA-TQ 87 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + + R + G G++N P L D + Sbjct: 88 ITDSIKKYSRYLRINSITITGGISYGLQNRMFSKPIDILVATPGRLLDLYQQKKINFKGL 147 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M K + Q + SAT Sbjct: 148 EVMILDEADRMLDMG-----------------FVPDIRKIYNATSKKQQMLMFSATFDPP 190 Query: 400 ELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + + + V + +I + +L + + ++ Sbjct: 191 IQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFIKN-DEVTQAIIF 249 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T TKRMA+ L++ L + LH D+ R + I + E +LV +L G+D+ Sbjct: 250 TATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILVATDLASRGIDV 309 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERR 571 +S V D + I IGR R G AI + I Sbjct: 310 KNISHVFNYDMPRF-----AEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKIERFTNL 364 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + + K ++ + V Sbjct: 365 KIEIASIPGMEATILKEAKAPKRKSKGRSFVKKGKVFKNEANAKKRIRSKPV 416 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 56/384 (14%), Positives = 113/384 (29%), Gaps = 19/384 (4%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K + T+ + E ++ G P L +VV Sbjct: 84 KKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRGADIVVA 143 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I R D R L E L + F Q + SAT Sbjct: 144 TPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSATMP 203 Query: 398 NYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 ++ S +V+ + I +VD + ++ + Sbjct: 204 KEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTSG--TM 261 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TK+M ++LT L + G LH D+ R ++ + G VL+ ++ G+ Sbjct: 262 IFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARGI 321 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ + +V D + + IGR R G AI + K I Sbjct: 322 DVDSMDVVINYDIP-----QELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLS 376 Query: 570 RRREKQQKYNEEHG---ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + + L +++ Q A ++ + + + Sbjct: 377 NSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLRNENFTQEEIIVAF 436 Query: 627 MSPKALQQKIHELEGLMMQHAQNL 650 ++ + + ++ + +N Sbjct: 437 INKMISESNLEAIKVSKQKDVKNK 460 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 102/713 (14%), Positives = 209/713 (29%), Gaps = 112/713 (15%) Query: 11 FKPSGDQPEAIRRLEEGLED---GLAHQTLLGVTGSGKTFTIANV--------------- 52 + + + + + +T++ T + +A + Sbjct: 6 LLTALTEDRSFANIRAQAARPLAERSAETIISATDGLRAPVLAQIAAGLADDAAASAPAG 65 Query: 53 ----IADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 A+ P ++ + A +L + + P + F PS +T Sbjct: 66 SGTSAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANF-------------PSWET 112 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERRD-----VVVVASVSAIYGLGDPDLYLKMMLHLT 162 + S RLS + + VVVA V ++ L + L Sbjct: 113 LPHERLSPRSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLR 172 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 G D + ++ LA Y+R D +RG F VRG +ID+FP ++D +R E F +E++ Sbjct: 173 TGQDYDFQQLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELD 231 Query: 223 RLSLFDPLTGQIV--STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + F + + + P + P + + ++KE+L Sbjct: 232 EMRWFAVADQRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGG---------- 281 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + LE + Y G+E+ + L+ + + LPA + VV E Sbjct: 282 ----------REMLERIAGGQYVEGMESLAPLLA-----DEMLQVMSLLPAGSMTVVLEP 326 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + A + + + A S Sbjct: 327 EKVRARAHDLVATNEEFLMAAWDSASGGSEAPLDLNAALDTDDDAARTLSSGSFHTIAEV 386 Query: 401 LEKSGG----------DVVDQVVRPTGLLDPIIEVRP------------------VATQV 432 + + V+ V D E + V Sbjct: 387 RDLALERSVGWWSVTGLNVNAVTTSQMDADTSDEEVHLADTDADTLTVTAREPTRFSGDV 446 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 +LS + +RA + R+++ T + L+E L + Sbjct: 447 PAVLSFLGERAREDWRIVLVTDGPGPLQRLSELLHGADVPAARY---------DSVDDAP 497 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + G + + G + + + +AD G + + + R N L Sbjct: 498 QPGLVE--LTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERKLPQRRKRNQVDPL 555 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + + +T G K V + L L +K Sbjct: 556 --ALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPRDR 613 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P + D V + + + ++ G + + +I ++L +L Sbjct: 614 LFVPTDQLDQVSTYVGGE--APSLSKMGGADWNKTKRSAKKAVKEIANELIRL 664 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 65/442 (14%), Positives = 122/442 (27%), Gaps = 38/442 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P ++ + ++ A + + Q ++ E Sbjct: 706 KADMERPIPMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAER 765 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 SG LS + + L + + VV +H + + Sbjct: 766 ------FSGFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLV 819 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP LE S + + T Sbjct: 820 IIDEE--------QRFGVEHKEKLKAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLAT 871 Query: 417 GLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 + + V + +S IR+ +V E + L E Sbjct: 872 PPEERHPVLTYVGPYTNKQVSAAIRRELMREGQVFFIHNRVSTIEAQAKELAELVPEARI 931 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + +II D +FDVLV ++ GLD+ + + + AD+ G + Sbjct: 932 AVAHGQMTESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDHADRYGLSQ--- 988 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + + +A Y K + ET R K + E G G+ + Sbjct: 989 --LHQLRGRVGRGRERAYAYFL---YPAEKPLSETALERLKAVAAHNELG---SGMQLAM 1040 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + V DM + + + + E G ++ E Sbjct: 1041 KDLEIRGAGNLLGGEQSG-------HIAGVGFDMYLRLVGEAVAEYRGDQDTGPAEMKIE 1093 Query: 654 ---EAAQIRDQLHQLRELFIAA 672 A D + R A Sbjct: 1094 LPVNAHLPHDYVPGERLRLEAY 1115 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 62/376 (16%), Positives = 111/376 (29%), Gaps = 22/376 (5%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + L + L++ EL S + R L GE L A +VV Sbjct: 69 QTQSLILCPTRELALQVCTELKKLSKFKKGLRVL-AVYGGESIERQIRDLKAGAHIVVGT 127 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + + L E L QT+ SAT Sbjct: 128 PGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLFSATLAP 187 Query: 399 YELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTT 453 L + + + + +E + + Q +N + +L+ Sbjct: 188 PILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQLMLIFC 247 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR E++T+ L+ +G LH D +R E++ R G ++LV ++ G+D+ Sbjct: 248 NTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAARGIDVT 307 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 V V D + + IGR R GK+ + I + Sbjct: 308 GVDAVINYDVPL-----DIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKAT 362 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 ++ + + K + + + + + A Sbjct: 363 IEKAETPTRQELVAY----KKDKLATRITTELEKP-----NIKIWSDLLEEYKEKGITAD 413 Query: 633 QQKIHELEGLMMQHAQ 648 Q I L M A+ Sbjct: 414 QIAIALLSKEMKDLAE 429 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 63/390 (16%), Positives = 116/390 (29%), Gaps = 36/390 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + R R L L + + RT+ Sbjct: 47 QTGTGKTAAFAVPLLQRLLESRYRAAPKSVRS---LILTPTRELADQITKNIKAYAGRTK 103 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G + ++ P L D +G+ + + + M Sbjct: 104 M-YTSCVVGGVPFPPQFHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQML 162 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT++ SAT + S + + Sbjct: 163 DLG-----------------FIAELEEIAYLLPKKRQTLFFSATMPREIRDLSERFLTNP 205 Query: 412 VVRPTGLLDPIIEVR---PVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 V T +E + D +++ + ER LV TLTK+ + L L Sbjct: 206 VEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELLEKDECERALVFTLTKKGSARLAARL 265 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G +H D+ ER + + + G+ LV ++ G+D+ ++S V D Sbjct: 266 NADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLVATDVAARGIDVSDISHVINFDMPN- 324 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK----YNEE 581 + + + IGR AR +G AI + M +AI + ++ + + + Sbjct: 325 ----ATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAIQKLIGKKIAEMDGFTFFPSD 380 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGR 611 N +V A G K G+ Sbjct: 381 REPKSARSNAQVAGKRAKGSGPRKGPGNGK 410 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 112/701 (15%), Positives = 211/701 (30%), Gaps = 92/701 (13%) Query: 7 LNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 L + P AIR + +TL+G IA++ ++ T Sbjct: 94 LEAPLHPLLKTLNQLSNWAAIRTAASAQPTERSARTLIGAVAGTHAALIADISTAVRDTT 153 Query: 61 -----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 +++AP A L ++ + P + F P+ +T + S Sbjct: 154 AEALSLIIAPTDRQAEDLAAALRSYLPAADIALF-------------PAWETLPHERLSP 200 Query: 116 NEHIEQMRLSATKAM---LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 RL +AM ++R VV+A V A+ + +HL G + + Sbjct: 201 RSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEPVHLVRGEEYPFKDV 260 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 +R L + Y+R D +RG + VRG +ID+FP + +R+E F +E++ + F Sbjct: 261 VRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQ 319 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + +S T EL +V+ +L + Sbjct: 320 RTLSGGEELTELTLLPC---------------RELLITPEVMSRAARLKADYPAAAA--- 361 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 LE + Y G+E+ + L E TL + LPA +++ E + + Sbjct: 362 MLEKIAGGIYVEGMESLTPLL-----IESMNTLTELLPAGSMIINVEPERVRARAEDLVA 416 Query: 353 GDRAR----KETLVEYG----------FRLPSALDN-RPLKFEEFEALAPQTIYVSATPG 397 + +T E S + EA Sbjct: 417 TNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITELVTD 476 Query: 398 NYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 LE + G + +Q + T ++ V+ +LS++ VL Sbjct: 477 ADLLEDAAGALQNQNIADAIEDGIDTYTVNATPA-TAFNGSVERMLSQVGDLIRQQWTVL 535 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 T + + L + GE + + T + L G + V G Sbjct: 536 ALTNGRGSTDRLIDLFHS-GEGAPAVPAARRTSLEADPAGKLEHGIVE--VCEAPASAGF 592 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN----VNGKAILYGDKITPSMAKAIG 566 + E L +A+ G + G A + A+ Sbjct: 593 LVEEAKLAVFTEAELLGRRG---TYAPR-GAAGQKFKTRRRRNAVDPLALNPGDYVVHER 648 Query: 567 ETERRREKQQKYNEEHGITPQGLN--KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 R + G+ K+ + I P + D + Sbjct: 649 HGIGRFVEMTSRPVAGASPVNGVQPMKEYLVIEYAPAKRGGAP---DRLFVPSDQLDLIS 705 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + ++ G ++ + +I L +L Sbjct: 706 NYVGGE--NPSLSKMGGSDWAKTKSRARKAVKEIAADLVKL 744 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 64/457 (14%), Positives = 128/457 (28%), Gaps = 43/457 (9%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D LT P ++ + ++ A + + Sbjct: 777 DQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQ 836 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + E SG R LS + + + + + + VV +H + Sbjct: 837 QHYETFSER------FSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDS 890 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + +SATP LE S Sbjct: 891 VVFKDLGLVIIDEE--------QRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTG 942 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYL 466 + + T + + V + D ++ IR+ +V +D+ + Sbjct: 943 IRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEI 1002 Query: 467 EEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + H + +II D FDVLV ++ GLD+ + + + A Sbjct: 1003 GKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQ 1062 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + + + +A Y + K +GE R K + E G Sbjct: 1063 NYGLSQ-----LHQLRGRVGRGRERAYAYFL---YPVDKTLGEIAHERLKAVATHNELG- 1113 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 GL + D+ G + V D+ + + + + G Sbjct: 1114 --AGLQLAMKDLEIRGAGNLLGGEQSG-------HIAGVGFDLYLRLVGEAVANYRGEKE 1164 Query: 645 QHAQNLEFEE-------AAQIRDQLHQLRE-LFIAAS 673 + + + I + +L+ IAA+ Sbjct: 1165 EREVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAAA 1201 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 107/343 (31%), Gaps = 15/343 (4%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + + + LT + ++ E+ R ++ GE F Sbjct: 60 PMVEKTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELR-VTTIVGGESYEKQFKE 118 Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V I I TL E L + + + Sbjct: 119 LDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETR 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQ 441 QT+ SAT + + + + + ++ + LL + Sbjct: 179 QTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLD 238 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++ TK A+ +TE L++ G LH D+ +R ++ R + +LV Sbjct: 239 F-ENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILV 297 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ +V ++ D + + + IGR R GKA + + Sbjct: 298 ATDVAARGLDVDDVEIIVNYDLP-----QQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRR 352 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 M + + K+ + + + L I N Sbjct: 353 MLDMLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANE 395 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 63/463 (13%), Positives = 129/463 (27%), Gaps = 66/463 (14%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 ILR L L Y + Q + PA + Sbjct: 12 DILRALEGLGYTEPTKVQQ-----------SVIPAALER---------------KDLVVK 45 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I + + ELA ++ E+ R Sbjct: 46 SQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAV---------QVKEDITNIGRF 96 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + + P + D++ L + S++ I + M Sbjct: 97 KRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEM 156 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + T+ SAT + S + + Sbjct: 157 LNMG-----------------FIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQN 199 Query: 411 QVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEY 465 GL IE + + ++ S ++ + ++ TK LT+ Sbjct: 200 PEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDE 259 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L++ G +H + +R +++ + + GE+ LV ++ G+D+ +SLV D Sbjct: 260 LDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPL 319 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 E + S + GR R GKAI + I E ++ + + + Sbjct: 320 E-----KESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEV 374 Query: 585 TPQ--GLNKKVVDILALGQNIAKT-KAKGRGKSRPIVEPDNVP 624 + K+ D ++ ++ + + Sbjct: 375 ARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIR 417 >UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micromonas sp. RCC299 RepID=C1EIE9_9CHLO Length = 576 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 102/306 (33%), Gaps = 35/306 (11%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G G + + P L D+L + + + ++V + + M Sbjct: 229 MYSVCLYGGAPKGHQLRELRHGPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRM-- 286 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 L + + K + QT++ +AT + + + + + Sbjct: 287 ---------------LDMGFEPQIRKILQRAPAQRQTLFFTATWPRAVVRVATAILTNPI 331 Query: 413 VRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 G D ++EV + L+ +R + +V TK+M + + Sbjct: 332 QVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEVLRNPPTQPLKAIVFCGTKKMCDQIG 391 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + G +H D + ER I+ R G VLV ++ GLD+ EV++V D Sbjct: 392 RSMGGMG---AVIHGDKEQRERDWILNQFRSGRVPVLVATDVAARGLDIKEVNMVVNFD- 447 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F + IGR R G A + + +MA+ + R + + Sbjct: 448 ----FPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEGNMARKLIPILRDAGQDVPAELDD 503 Query: 583 GITPQG 588 G Sbjct: 504 MARRGG 509 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 49/445 (11%), Positives = 124/445 (27%), Gaps = 65/445 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +L+ + +L + + Q ++ I + ++ + + + Sbjct: 13 DTLLKSINDLGFEKPSQIQ------------------AEAIPVAIQGY-DLIG------- 46 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++++ + + + ELA + L+ ++ + Sbjct: 47 QAQTGTGKTA-AFGCGIINHISKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTILP- 104 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 G + + + P + D++ + + + + + Sbjct: 105 --------VYGGDPITNQIRALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + QT+ SAT + + + + Sbjct: 157 MLNMGFIDDLE-----------------DIIKQLPSERQTLLFSATMPDQIRKLAKRYMK 199 Query: 410 -DQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLT 463 D I + + ++ TK+ ++L Sbjct: 200 PDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTPSSAIIFCRTKKGVDELV 259 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E ++ G V +H D+ R+ ++ + G + LV ++ G+D+ ++ V D Sbjct: 260 EGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVAARGIDVEGITHVINYDL 319 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + S + IGR R G A SM K I + ++ + Sbjct: 320 P-----QDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVTKSDISRKNIPTVN 374 Query: 583 GITPQGLNKKVVDILALGQNIAKTK 607 I + D+ + +K Sbjct: 375 DIFNSKSKSILEDVTNTINDSDYSK 399 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 100/644 (15%), Positives = 191/644 (29%), Gaps = 74/644 (11%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRP---TMVLAPNKTLAAQLYGEMKEFFPENAV 86 T G+ GS IA + ++ A +L E+ F P+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS-AI 145 +P + S ++ + RL+ +L +V+ V+ A+ Sbjct: 75 RL-------------LPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTAL 121 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 LG P+ G +++ A+ +L + Y + G + +RG + D+FP Sbjct: 122 QRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ R++LF +E+E++ F+P T + + + + P + +E Sbjct: 182 GS-NLPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + +GIE+Y E +L Sbjct: 241 VFEGDPSRC-----------------SIYKDASLGIPSAGIESYLPLF-----FEENSSL 278 Query: 326 FDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 FDYLP + + I G ++ +R E L R L +E Sbjct: 279 FDYLPRSGDPVWLVSIGDVEETIKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDE--- 335 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 + S + L V + V + D +S +R A Sbjct: 336 ------FFSTSKPYARLSLENEAVEKNEFFAVPDI-------SVHRRDADPISRLRNVVA 382 Query: 445 -INERVLVTTLTKRMAEDLTEYLEEHGERVRY----LHSDIDTVERMEIIRDLRLGEFDV 499 N RVL+ + + E + + +E L+S E + I + E Sbjct: 383 SENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSLYSLKP--EGFDSIAEFIKSESLF 440 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL--YGDKI 557 + L G P +L+ I +A+ +R G+A N + + + Sbjct: 441 GLVTAPLFNGFSWPSENLIVITEAELFTTTTRQR----RKGKANENADSDMLFKDLSELK 496 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 R + N + + + GQ + Sbjct: 497 IGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFE-EFLHLQYAGQATLYVPVQQLQMVTRY 555 Query: 618 VEPDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 D + + + + A L AA+ Sbjct: 556 AGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARA 599 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/405 (11%), Positives = 114/405 (28%), Gaps = 35/405 (8%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P V + ++ A Q + Sbjct: 638 DMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFA 697 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + +E + + ++ +H + + Sbjct: 698 D-WPVRIVELSRFKTTKEINVA-----LAAIAKGEADIIIGTHKLLSKETQFANLGLVIA 751 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + R + + ++ATP L + + + + T Sbjct: 752 DEE--------HRFGVRQKDALKALRAEVDILTLTATPIPRTLGMAMEGLREFSIIATAP 803 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--Y 475 + V + DD++ + + +V ++ L+E R Sbjct: 804 QKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHNEVETIQNRKHALQELIPEARISV 863 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E ++R+ ++L+ ++ G+D+P + + + ADK G + L Sbjct: 864 AHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ----L 919 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + P+ ++A+ + + R + EE G G + D Sbjct: 920 HQLRGRVGRSHHR---AYAYLLVPN-SEALSKQAQLRLNAIQAMEELG---SGFYLAMHD 972 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + E + + + L + + L Sbjct: 973 LEIRGAGEVLGDKQSG-------EIHEIGFQLYTEMLNRAVKSLR 1010 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 52/373 (13%), Positives = 107/373 (28%), Gaps = 32/373 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPR--------ERIVQAMEEIKEELAARRKVLLENNKLLEE 283 F ++ +T ++ + L L E Sbjct: 197 QTGSGKTCAFLFPIISNLMTQPGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDES 256 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 ++ T T ++ G + P L D + + + + ++ Sbjct: 257 RKFTYHTGR-RTVVAYGGAAIQYQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLV 315 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + M + + +P T+ SAT Sbjct: 316 LDEADRMLDMGFEPQIRYIVEKTGMP-------------APGQRITLMFSATFPKNIQTL 362 Query: 404 SGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMA 459 + + + + G + E + V + D+ + + A LV TK+ A Sbjct: 363 ARDFLHNNLNLTVGRVGSTHENILQKFVYCKDDEKRDLMLEAIASVETLTLVFVKTKKEA 422 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 L +L ++G + +H D ER + + R G +LV ++ GLD+ +V V Sbjct: 423 SILEYFLMKNGFKSSSIHGDKTQRERETALENFRRGITPILVATDVASRGLDINDVGHVI 482 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + + IGR R G + + +A + +++ Sbjct: 483 NYDLP-----ENIEDYVHRIGRTGRAGNTGISTSFFTDKNNQIADDLITVLEEAKQEVPP 537 Query: 579 NEEHGITPQGLNK 591 G K Sbjct: 538 FIVEGRDKLRYAK 550 >UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetazoa RepID=VASA_DROME Length = 661 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 37/332 (11%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM-----MNELGYCSGIENYSRFLSGR 316 + EL + V++ + L Q + +F E + G +N Sbjct: 311 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCH 370 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P L D++ + D V + + M + + + Sbjct: 371 VVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP------ 424 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVA 429 QT+ SAT +G + + V G + I Sbjct: 425 ---------EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY 475 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L+ + ++A +V TKR A+ L +L E +H D +R + + Sbjct: 476 AKRSKLIEILSEQAD---GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAL 532 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 RD + G VL+ ++ GLD+ + V D + IGR R NG Sbjct: 533 RDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP-----SKIDDYVHRIGRTGRVGNNG 587 Query: 549 KAILYGDK-ITPSMAKAIGETERRREKQQKYN 579 +A + D ++A + + + Sbjct: 588 RATSFFDPEKDRAIAADLVKILEGSGQTVPDF 619 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 221 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 68/386 (17%), Positives = 125/386 (32%), Gaps = 15/386 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLT-QRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 A L +NK L + L T+ + E E+ + G Sbjct: 99 TGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGG 158 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLK 378 L +VV + I ++ + L E L Sbjct: 159 TDYRNQIYALKRKVDVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEW 218 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDL 435 + Q + SAT N + + D +I + + Q Sbjct: 219 IIDQLPKNKQMVLFSATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHK 278 Query: 436 LSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L +++ NE V++ TK + + E LE G V L+ DI +R + L+ Sbjct: 279 LDALKRILELNNEGVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKK 338 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G D+LV ++ GLD+ + LV D F + + IGR R G+AIL+ Sbjct: 339 GFIDILVATDVAARGLDVERIKLVVNYD-----FPFDKETYTHRIGRTGRAGRSGEAILF 393 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + + R + ++ I + + K + ++ ++ + K Sbjct: 394 VNHREKHFLRNLENSTRTKIEEINIPSNKIINEKRMEKLIENV---NESSLAKEDNEENK 450 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHEL 639 + I DN+ S + + Sbjct: 451 ALIIDVLDNLKEKHSMDDSNIAMAAI 476 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 50/340 (14%), Positives = 107/340 (31%), Gaps = 13/340 (3%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + E K ++ L + L++ +E+ G + ++ G+P L Sbjct: 61 IEAIDEKEKSVQAIILAPTRELALQVADEIKSLRGRKR--VYVYAVYGGQPIGPQIRALE 118 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + I + + L E L + + Sbjct: 119 RGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRV 178 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAIN 446 + SAT L + + D V + + +E + S +++ + + Sbjct: 179 LMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILSDD 238 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V TKR +L+E L + G L+ D+ R + +LV ++ Sbjct: 239 FYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVA 298 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD+ ++S + + + IGR R GKA+ + + I Sbjct: 299 ARGLDVQDISHIVNYSLPM-----TAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYI 353 Query: 566 GETERRREKQQKYNEEHGIT-PQGLNKKVVDILALGQNIA 604 ++ + +EE + ++ Sbjct: 354 ASVAGVDIQKSELSEELPREYHERYKREERPQRYRKNGRR 393 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 103/648 (15%), Positives = 195/648 (30%), Gaps = 77/648 (11%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 L+ + +L ++ S + ++L N A + ++ F Sbjct: 17 SLKGQTSTWSLNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAE---- 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P P +T S ++ I RL + + +++ VS + Sbjct: 71 --------TDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLI 122 Query: 147 GLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P + K L G +D A R+L Y R Q + G F VRG +ID++P Sbjct: 123 QKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPM 182 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 183 GS-RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRS 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R + + G+E Y T Sbjct: 242 HFGDD-----------------ARNSQLYRSVKDGQTVDGLEYYLSLFHSNIA-----TF 279 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA- 384 FDYLP+D L QI ++ + R + L E + Sbjct: 280 FDYLPSDCLFF--NQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSA 337 Query: 385 -LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 A I S P + + + + P+ ++ Q + Sbjct: 338 LKAFHRIQFSLQPTDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQYA---------S 388 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 N R+L + E L L +H + ++ + + + + + Sbjct: 389 EHNGRILYCAESTGRRETLLTILSKH----PQFKGKLPKQ--IDSWGEFKTSKAPYEIIV 442 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 L + + + ++ G ++IQ R R + + I + + Sbjct: 443 GPLED--SVYTDDFCILSESQIFGQ-----TVIQKRRRK-RKHSEFDNAISNLIELDLGQ 494 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + ++ +T QG + + I G P+ + Sbjct: 495 PIVHFDH---GVGRFLGLETMTIQGEEHEFLMIQYAGDAKL---------YVPVTSLHLI 542 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 A +H+L A+ E+ + +L + A Sbjct: 543 SRYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREA 590 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 56/439 (12%), Positives = 125/439 (28%), Gaps = 43/439 (9%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P + + ++ A + Q + + Sbjct: 632 DKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFAD--- 688 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 LS + + + + + + ++ +H I + Sbjct: 689 ---WPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIIIDEEH 745 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 +G R + + ++ATP L + D+ D + T + Sbjct: 746 RFGVRQKEQ--------LKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRL 797 Query: 423 IEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSD 479 V D++ + ++ + E + E ++ +V H Sbjct: 798 AVQTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQ 857 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + E +++++ F++LV ++ G+D+P + + I ADK G + L Q Sbjct: 858 MHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQ----LHQLR 913 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ + Y T A + + +R ++ G G D+ Sbjct: 914 GRVGRSHHK---AYAYLFTAGKA-LMTKDAEKRLTAIAKHDTLG---AGFMLASHDLEIR 966 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNL----EFEE 654 G + + + + L + + L+ G + L E E Sbjct: 967 GAGELLGDGQSG-------QIHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVEL 1019 Query: 655 ---AAQIRDQLHQLRELFI 670 A D L + + Sbjct: 1020 GMPALIPEDYLPDIHTRLV 1038 >UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID=Q8IAU1_PLAF7 Length = 941 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 106/372 (28%), Gaps = 30/372 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIV-------QAMEEIKEELAARRKVLLENNKLLEEQ 284 + + H + + + ++L + L Q Sbjct: 407 QTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNKTSNYYFNRVCLPICLILAPTRELAVQ 466 Query: 285 RLTQRTQFDLE-----MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 +F E ++ G + + P L D L + + Sbjct: 467 IFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGRLNDILEKGKIKLFLT 526 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-------PQTIYV 392 + + + + M + + + + +P ++ + E QTI Sbjct: 527 TFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDNDVHTSENKVEYKKYCNDIIKRQTIMF 586 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLLSEIRQRAAINE 447 SAT + + G + E V + N Sbjct: 587 SATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYIKQNLVFVEEENKCNYLLNLLAENNNG 646 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ TKR A+ + +L +H D ER ++ + G ++LV ++ Sbjct: 647 LTILFVETKRKADIIERFLSNQKLNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAA 706 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ + V D + I IGR R N G A + ++ ++ K + Sbjct: 707 RGLDISNIKHVINFDLP-----SNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIFKDLL 761 Query: 567 ETERRREKQQKY 578 T +Q Sbjct: 762 ATLEECNQQIPR 773 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 98/322 (30%), Gaps = 19/322 (5%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + +++ +E+ S E + G+P + D L +VV Sbjct: 83 PQALILVPTRELAVQVRDEVVKLS--EGLKINCAAVYGGKPIKSQVDKLKKGCHVVVGTP 140 Query: 341 HVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + G L E L + + QT+ +SAT Sbjct: 141 GRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLLLSATVPPP 200 Query: 400 ELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + + + + ++ + D L+ + + ++ +V Sbjct: 201 IAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLRE--EPKQAIVF 258 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR + + + L + +H D+ +R ++ R G LV +++ G+D+ Sbjct: 259 CRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDVIGRGIDV 318 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 VS + D + +GR R G A + I E + Sbjct: 319 STVSHIVNFDIPVF-----CDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERINK 373 Query: 572 REKQQKYNEEHGITPQGLNKKV 593 K+ + G Sbjct: 374 LLKR-DEMRDFEPVGYGERSAR 394 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 100/354 (28%), Gaps = 29/354 (8%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + T + R + + L E ++L +F Sbjct: 127 IGQAQTGTGKTAAFLIPFLNRWRPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRF-R 185 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + G + P + D+L + + + + + M Sbjct: 186 CVPVYGGTGMQRQLDGLTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIG 245 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 + + + QT+ +SAT + + D V Sbjct: 246 -----------------FRDDIERILKRCPSERQTLLMSATVPDSIKRLVNRYMRDPVHL 288 Query: 415 PTGLLDPIIE---VRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEH 469 P ++ D +++ + L+ KR A++L L+ Sbjct: 289 HMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPRQCLIFVERKRWADNLYRDLKRA 348 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 + +H D+ +R +I+ R + L+ +++ G+D+ +S V D Sbjct: 349 VPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMSRGIDVSGLSHVINYDLPM---- 404 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + IGR R +G AI + I R ++ + Sbjct: 405 -DIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINRLIEEDRVEGFE 457 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 54/387 (13%), Positives = 105/387 (27%), Gaps = 18/387 (4%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 +L+ + + + T+ + + Sbjct: 48 HTGTGKTAAFGIPLLEMLDYSSKKVQALILCPTRELAVQVAREIAALASNRKEIEVLAIY 107 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRP 376 G+ + L +VV + + + D + L E L Sbjct: 108 GGQSIERQINTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDI 167 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVD 433 Q SAT + + + + + +E + Sbjct: 168 RYILSHVGKERQITMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGES 227 Query: 434 DLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + + + LV TK+ ++L L+ G V LH D+ R ++ Sbjct: 228 RKFDALSKLIEYYNPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNS 287 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R VLV ++ G+D+ ++ V D + E + IGR R GKA Sbjct: 288 FRNKSIKVLVATDVAARGIDVDDIEAVFNYDIP-----QDEEYYVHRIGRTGRAGKTGKA 342 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + I + + K E + K++ L +I + Sbjct: 343 FSFAYGRSLHRLREIQRYTKIKIKSLNVPSEKDVN----TKRMESFLGEINDIL--EQGN 396 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIH 637 P VE S + I Sbjct: 397 LSDYVPAVEELIARGYTSMEIAAALIK 423 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 57/403 (14%), Positives = 124/403 (30%), Gaps = 36/403 (8%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E K + + T+ + + G L ++ Sbjct: 69 EQEKPTAQVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLKKAHIV 128 Query: 336 VVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + L E L + QT+ SA Sbjct: 129 I-GTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSA 187 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAINER 448 T + + + ++ + + + ++L+ + + Sbjct: 188 TMPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGS-KL 246 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TKRM +DLT++L ++G LH DI ER ++ + + + +LV ++ Sbjct: 247 TIIFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAAR 306 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ +V V D ++ I IGR AR G +I + + Sbjct: 307 GIDVKDVEYVINYDIP-----QNSEYYIHRIGRTARGGKTGTSITMTN--NRKQVTDLKM 359 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 + K +DI +K ++ +N D Sbjct: 360 ILKETNS---------------KIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDE 404 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 L+ + E + + A NL F + ++ + ++ ++ I Sbjct: 405 MISDLKD-LGYSENQIAKAALNLYF---GETKENIVKIEDISI 443 >UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax=Brugia malayi RepID=A8QDF3_BRUMA Length = 587 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 110/343 (32%), Gaps = 22/343 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + + + T+ ++ ++ + N+ ++ G Sbjct: 247 IVHMQNQEQPEKVRGPAVLILAPTRELVQQISSMAM-----NFHSKVACAYGGSGRDQQA 301 Query: 327 DYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + ++ + I G+ +R L E L + + + Sbjct: 302 RTIREGVDILAAAPGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIRRIVSMIRP 361 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLS 437 QT+ SAT + + D V G L ++ V + + LL Sbjct: 362 DRQTLMFSATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEEKLLE 421 Query: 438 EIRQRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + + + + L+ KR A+ LT + + G LH D ER ++ D + GE Sbjct: 422 FLNRTSSEQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGE 481 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGD 555 +LV ++ GLD+ ++ V D ++ I IGR AR+ G + Sbjct: 482 CSILVATDVAARGLDVNDIKYVINFDCP-----KNIEDYIHRIGRTARHDKTGTSYTLCT 536 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + + ++ + + + K Sbjct: 537 RSDAPIVNELVSVLKEAKQTVPSD-LLDLVSRHPTKSSRKFKI 578 >UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA Length = 636 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 99/327 (30%), Gaps = 32/327 (9%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ EE + + G + + P L D + + + Sbjct: 264 ATQIFEESKKFCYRSRMRPAVLYGGNNTQDQMRDLERGCHLIVATPGRLEDMIGRGKVGL 323 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + + M + + R+P QT+ SAT Sbjct: 324 DNIRFLVLDEADRMLDMGFEPQIRRIVEESRMP-------------VTGERQTLMFSATF 370 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINER- 448 E + + + G + I + LL + N+ Sbjct: 371 PKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEENIKRSHLLDLLSNITKQNDGD 430 Query: 449 -----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 L+ TK+ A+ L E+L H V +H D ER E +R R G +LV Sbjct: 431 DENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRLFRCGRCPILVAT 490 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 + GLD+P V V D E + IGR R N G A + ++ ++A Sbjct: 491 AVAARGLDIPNVKQVINFDLPAE-----VEEYVHRIGRTGRMGNLGTATSFFNEKNRNVA 545 Query: 563 KAIGETERRREKQQKYNEEHGITPQGL 589 + ++ E + Sbjct: 546 NGLVRLLAETGQEIPGFLEEMTNSRSF 572 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 96/322 (29%), Gaps = 14/322 (4%) Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ + + GE L +VV + + Sbjct: 4 PTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDHMR 63 Query: 349 G-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + L E L E Q + SAT +E + Sbjct: 64 RKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIANKY 123 Query: 408 VVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + V T ++ + ++L+ + + + +LV TK+ +D Sbjct: 124 QTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLID-SNNFKLMLVFCNTKKRVDD 182 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L + L G + LH D+ + R ++ R G D+L+ ++ G+D+ +V V Sbjct: 183 LCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFNY 242 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + + IGR R G + + + I + + Sbjct: 243 DLPIDD-----EYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPT 297 Query: 581 EHGITPQGLNKKVVDILALGQN 602 I +N + +I + Sbjct: 298 MDDIKGNKVNSILDEIKEEIKE 319 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 60/411 (14%), Positives = 111/411 (27%), Gaps = 39/411 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ +A + L L ++ E L + Q Sbjct: 46 QTGTGKTASFTLPMIDIL-----ASGKAKARMPRSLILAPTRELA-TQVSENFTLYGKYQ 99 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D +L+ D + I + M Sbjct: 100 KLSMALLIGGESMNEQQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRML 159 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT++ SAT + +++ Sbjct: 160 DM-----------------GFIPDVERIVALLPKIRQTLFFSATMDKEIRRLADAFLMNP 202 Query: 412 VVRPTGLLDPIIEVRPV-------ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + E + + + L +R+ N + KR + L + Sbjct: 203 KEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTN--AFIFCNRKRDVDVLYK 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L HG + LH D+ R E + + E ++V ++ G+D+ EVS V D Sbjct: 261 SLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSDVAARGIDVTEVSHVFNFDVP 320 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 I IGR R G+A +AI + E Sbjct: 321 TH-----PEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIENLLGKTIPPDPQLELSD 375 Query: 584 ITPQGLNKKVVDILAL-GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + + V + + +G +S P ++P+ Sbjct: 376 VAVEDVALAVAEDDRRPKRGGKGRPERGARRSGRGSADAERPRPLAPERAA 426 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 100/642 (15%), Positives = 178/642 (27%), Gaps = 79/642 (12%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIAN--VIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPE 83 L G GS IA Q P + V+ N A +L E++ F P+ Sbjct: 73 ALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPD 132 Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 V +P +T S ++ + RL+ + E R +++ + Sbjct: 133 ARVRV-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT 179 Query: 144 -AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 A+Y + T G +D+ + +L Y Q + G + VRG +ID+ Sbjct: 180 TALYRMPPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL 239 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + R++LFD++V+ + FDP T + + + + P + Sbjct: 240 FPMGS-PLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR 298 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E + + +GIE Y + Sbjct: 299 WRETFEGD-----------------PSRAPIYKDIGNGVPSAGIEYYLPLF-----FDET 336 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 TLF YLP + LV + I + R L R L ++F Sbjct: 337 ATLFHYLPENAQLV--FTGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLFLSDDDF 394 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 LA + + G P+ + L + Sbjct: 395 YLLA--------------KPFARIVL--PAQPSGGWAAPLPNLALDRHADAPLAAFAAYL 438 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N RVL T + E + + EH R +E LG Sbjct: 439 ETTNNRVLFTVESAGRRETIAQLFAEHHLRPA---GSDSFAAWLETDERFALGVAP---- 491 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L G +P + + + G L R + + S Sbjct: 492 ---LASGFAVPGEGYAIVTETELYGALGRRAG--------RRRQEQASNVDAMVRDLSEL 540 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 K + +Y + + + + + G + D Sbjct: 541 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSGADP 600 Query: 623 VP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + ++ + A L A + + Sbjct: 601 DSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAARE 642 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 68/442 (15%), Positives = 131/442 (29%), Gaps = 43/442 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P V + ++ A Q TQ ++ Sbjct: 678 DMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFIDRFA 737 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + + I SRF S + + D + +V +H + R Sbjct: 738 D--WPVKIVELSRFKSTKEVNAAIQQIND----GSVDIVIGTHKLLSSDVQFKRLGLVII 791 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + R + + + ++ATP L + + D V T Sbjct: 792 DEE--------HRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAP 843 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL- 476 + V + + ++ + + +V E+ LEE R + Sbjct: 844 QKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVPEARIVI 903 Query: 477 -HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E ++RD +VL+ ++ G+D+P + + + ADK G + L Sbjct: 904 AHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQ----L 959 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + A Y P +A+ + +RR + + EE G G + D Sbjct: 960 HQLRGRVGRSHHQ-AYAYLLVHDP---QALTKQAQRRLEAIQQMEELG---SGFYLAMHD 1012 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLE--- 651 + G + E + + + L + L+ G L Sbjct: 1013 LEIRGTGEVLGDKQSG-------EIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATT 1065 Query: 652 ----FEEAAQIRDQLHQLRELF 669 A D ++E Sbjct: 1066 EINLHAPAILPADYCGDVQERL 1087 >UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792ED5 Length = 621 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 116/397 (29%), Gaps = 35/397 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ + + + + F + H + LA Sbjct: 221 PSPVQCQTWP-VIMSGHDLIAIAQTGTGKTLAFLLPAFIHIDFQPTPRSERKGPSILVLA 279 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 E +E + + M G SG + P L D+ Sbjct: 280 ----PTRELVLQIESEVKKYSYKGIKAMSIYGGASSGKQKEVLRKGVEIVIATPGRLNDF 335 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + + D + + + + M + + Q Sbjct: 336 VGSGAIDLSDVTFLILDEADRMLDLG-----------------FEPQIRVSLLRVRPDRQ 378 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-------ATQVDDLLSEIRQ 441 TI SAT + + + G LD + + L + + Sbjct: 379 TIMTSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEEEKEVWLDDFLK 438 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + ++++++ K + L+ L G V +H + +R + LR GE ++L+ Sbjct: 439 SCSADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNILI 498 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ ++++V D F + + +GR R G AI + Sbjct: 499 ATDVASRGIDINDITVVINYD-----FTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWG 553 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 AK + E + + + + K+ Sbjct: 554 KAKDLVEVMEKSGQDVPPELQEMASRYEAKKERDRAE 590 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 98/623 (15%), Positives = 198/623 (31%), Gaps = 69/623 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 R ++++A A +++ ++ + EN P +DT + S Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGEN--------------VMLFPPTDTLPYEHMS 99 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 100 ADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL 159 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 160 AHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQR 218 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + I P R K + + + + Sbjct: 219 SDKRVRQIQISPAHEIPFWRRT-------------EAIKRIEQLQIASLRREVQHEWATA 265 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F L+ +LPA ++++ E H Q + Sbjct: 266 REHLETGQRFEGRAFYAPFFRTPHEAAEAG-LWQHLPASAIILLSEEHELNAQGIELQSH 324 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + T +E P ++ + + + + Sbjct: 325 ADLVRSTQIENNELPPDFPFPLIAWTFIRRSIQRWSCLNLSNQP-----IAD--DQNDSF 377 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ + Q D L ++R+R ERV++ + +L Sbjct: 378 VHE--INTFSQAASYGGQTDRLFEDLRERLVGGERVVLISPQASRLRELASQ------HN 429 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L + D + + + G +++ L G + L + D++ G+ + Sbjct: 430 LALIGEEDGPDVDDPP--FQSGT--IIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQRRA 485 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + T R R + + I + E + I G ++ Sbjct: 486 --LSTRARKQRTESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSR------IEASGAEREF 537 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + A G P+ + D V + + + L + A+ Sbjct: 538 LVL---------RYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKRKVRA 588 Query: 654 EAAQIRDQLHQL---RELFIAAS 673 + ++ +L L R+L + Sbjct: 589 DVEELATELLDLYAARQLVEGFA 611 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 133/441 (30%), Gaps = 37/441 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + + Q + Sbjct: 642 KSDMENTRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRR 701 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + IE SRF S + + +V +H + + Sbjct: 702 MQ--MFPVRIEMLSRFRSASQQKSITERIV----KGEIDIVVGTHRILSSDIHFKQLGLV 755 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + L + + ++ATP + + + D V T Sbjct: 756 IIDEEQRFGVKDKERLKKLRHEI--------DVLTLTATPIPRTMHMALSGIRDLSVIDT 807 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR- 474 D + V + L+ I + N + + + L++ R Sbjct: 808 PPDDRMPIKTYVQPYNEMLVRDAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARI 867 Query: 475 -YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + ++I G FDV V ++ G+D+P + + I DA G + Sbjct: 868 GVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQ--- 924 Query: 534 SLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 L Q GR R+ G A ++ + KA+GE ++R + + E G G Sbjct: 925 -LYQLRGRVGRSTQRGYAYMFYNPT-----KAMGEEAQKRLEAIQEATELG---AGFRIA 975 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + D+ G + + D+ + L Q + + + Q Sbjct: 976 MRDLEIRGTGNLLGAEQSGN-------ITTIGFDLYSRLLSQAVERVREERKRGQQQKSG 1028 Query: 653 EEAAQIRDQLHQLRELFIAAS 673 E+ AQ + LR + ++ Sbjct: 1029 EQKAQRARAVEALRRAAVVSA 1049 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 62/416 (14%), Positives = 122/416 (29%), Gaps = 38/416 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 G+ V + + P + + L L R Sbjct: 44 GRDVLGQAQTGTGKTAAFALPILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLP 103 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + S P + D+L L + +H+ + + M Sbjct: 104 GFNVLPIYGGQSYVPQLASLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEML 163 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R + + Q SAT + + + D Sbjct: 164 RMGFI-----------------DDVESILKKTPPQRQVALFSATMPSAIRRIAQTYLRDP 206 Query: 412 VV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + ++D L + E +++ TK+ E+L E Sbjct: 207 QEITIKAATTTATHIQQRYWMVSGLHKLDALTRIL--EVEPFEGMIIFARTKQATEELAE 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G L+ D+ R +++ L+ G+ D+LV ++ GLD+ +S V D Sbjct: 265 KLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAARGLDVERISHVVNYDIP 324 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 S + IGR R G AIL+ + +AI R+ Q + Sbjct: 325 T-----DTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQPITQMQLPSTEA 379 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + +++ + I + +G + +VE D+ + + + Sbjct: 380 VNDSRISRFMERITEA------REQEGLEDYQRLVERYEQEFDIPAIEIAAALARM 429 >UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 Tax=Euteleostomi RepID=DDX43_HUMAN Length = 648 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 55/411 (13%), Positives = 126/411 (30%), Gaps = 37/411 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + L + + H V Q L Sbjct: 264 KPTPIQSQAWPIVLQGIDLIGVA-QTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVL 322 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 E +E + + + G + P L D Sbjct: 323 ----TPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND 378 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ + + + +++ + + M + + +K Sbjct: 379 LQMSNFVNLKNITYLVLDEADKMLD-----------------MGFEPQIMKILLDVRPDR 421 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + + ++ G LD I V + + + + Sbjct: 422 QTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFL 481 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q + ++V+V K +A+ L+ L V LH D + +R + + + + G+ + Sbjct: 482 -QSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +L GLD+ +V+ V D F R+ + IGR R G +I + Sbjct: 541 LIATDLASRGLDVHDVTHVYNFD-----FPRNIEEYVHRIGRTGRAGRTGVSITTLTRND 595 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +A + R + +++ ++ + K Sbjct: 596 WRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERPQGRPKK 646 >UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QF24_SCHMA Length = 794 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 88/588 (14%), Positives = 163/588 (27%), Gaps = 93/588 (15%) Query: 30 DGLAHQTLLGVTGSGKTF-----TIANVIADLQRP-----TMVLAPNKTLAAQLYGEMKE 79 +L TG+GKT + ++I +VLAP + L Q+ + + Sbjct: 44 SSGRDAVVLARTGTGKTLAFSLPLVNSLIKGQGSRPSSPVVLVLAPTRELVTQIATDFES 103 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 V Y+P+ A+ + +VV Sbjct: 104 ISVHGIKVTSVYGGVPYRPQC---------------------------DALRQGTHIVVG 136 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A + L + + + V +D R+ ++ +++ D G F Sbjct: 137 APGR-VIDLMEKGVLKLSSVRHVVLDEVD------RMLDMGFSK-DVEISPGDFSN---- 184 Query: 200 IDIFPAESDDIALR--VELFD------EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 +I + + R ELF + + L F Sbjct: 185 FNIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAF------SLPL 238 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 I + E + + G + + Sbjct: 239 VNSLIKGQGSRPSSPVVLVLAPTRELVTQIATDFESISVHGIKVTSVYGGVPYRPQCDAL 298 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D + L + HV + ++ M ++ + Sbjct: 299 RQGTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILS------- 351 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD----QVVRPTGLLDPIIEV-- 425 + + PQT+ SAT ++ E S + D + V Sbjct: 352 -----KIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTH 406 Query: 426 ----RPVATQVDDLLSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P ++ L I+ R +V K+ A++L+ G LH + Sbjct: 407 LALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG-DCHVLHGSV 465 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R +++ R G++ L+ N+ GLD+P V LV R I G Sbjct: 466 PQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPP-----RDIEDYIHRSG 520 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 R R G +I + SM I ++ + IT Sbjct: 521 RTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTA 568 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 59/412 (14%), Positives = 131/412 (31%), Gaps = 23/412 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +++ N+ + + T+ +++ Y G + ++ G Sbjct: 50 TGKTAAFGLPTMSMIDANQNRVQLLVITPTRELATQVSDELYSLGRFCGIKTVTI-YGGS 108 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR-KETLVEYGFRLPSALDNRPLKF 379 + ++V + + A L E L + Sbjct: 109 SYSRQIGLIEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEI 168 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQ 431 + QT+ SAT + + + ++ + V + Sbjct: 169 FTYLPKERQTLLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYER 228 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D ++ + E+ +V TK+ + L+ L G + LH D++ +R +I+ Sbjct: 229 DDAMIRLLDAL--EPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKA 286 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R + ++LV ++ GL++ ++S V S + IGR R G A Sbjct: 287 FRSSQIEILVATDVAARGLNVADISHVFNYHMPF-----DPESYVHRIGRTGRAGKKGTA 341 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK--- 607 I I + IG+ + + + + L K DI N +K Sbjct: 342 ITLVTPIEFHSMQRIGKKVGSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLA 401 Query: 608 --AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + S+ ++ + + + KI + + +N+E E ++ Sbjct: 402 ILEEEMDMSQIALKLLSNLLKENTPVGPDKIGLDKKTLESVVKNIEERENSR 453 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/386 (15%), Positives = 111/386 (28%), Gaps = 27/386 (6%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L K+ L + LT + +++ + + G Sbjct: 116 FALPVLHKLTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLHLR--TVCLYGGAKRGP 173 Query: 325 LFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L ++V + + L E L + E Sbjct: 174 QIGALRRGADILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVEST 233 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + D V + +E + + + +D I Sbjct: 234 PSKRQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIA 293 Query: 441 QRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E +V T TK A+ L+ L+ G +H D +R + + + G+ Sbjct: 294 SLLTDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVR 353 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 V+V ++ GLD+P++S V D +E I IGR R +G AI + Sbjct: 354 VMVATDVAARGLDIPKLSHVFNYDVPEEAGA-----YIHRIGRTGRAGESGIAITLCCEA 408 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + E + + + + + GR R Sbjct: 409 ELDALREVEELLEKPIPELQTQWSLPLERKARK-----------GKGGRTRHGRSGYRSG 457 Query: 618 VEPD--NVPMDMSPKALQQKIHELEG 641 + + + Q + Sbjct: 458 GQKNAGKSGHKTGSRNRQGHADRRQK 483 >UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces pombe RepID=PRP28_SCHPO Length = 662 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 110/367 (29%), Gaps = 16/367 (4%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F I M + L +E + + F Sbjct: 298 GKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGF-RC 356 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G+ +++ P L D L ++ ++V + + M Sbjct: 357 VSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGF 416 Query: 356 ARKETLVEYGFRLPSALDNR--PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +A + L + QTI SAT + +++ V+ Sbjct: 417 EDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVM 476 Query: 414 RPTGLL-------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + + +E+ ++ + EI + + +++ KR E + + L Sbjct: 477 LTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQL 536 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G LH +R I LR D+LV ++ G+D+P VSLV + Sbjct: 537 NAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNM--- 593 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 +S IGR R +G AI + + + R K +E Sbjct: 594 --AKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHE 651 Query: 586 PQGLNKK 592 + Sbjct: 652 AAFVRHA 658 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 51/342 (14%), Positives = 104/342 (30%), Gaps = 13/342 (3%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + ++ L + +++ E+G+ + + + G+ + L A +V Sbjct: 69 KLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGV-PIYGGQSYERQYRALAAGSQVV 127 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + + L E L K + Q ++ SAT Sbjct: 128 IGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFFSAT 187 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAA--INERVL 450 E D + +E L + + + Sbjct: 188 MPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFRYGI 247 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TK M +DL E+L G V LH D+ +R ++ R F+ L+ ++ GL Sbjct: 248 VFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAARGL 307 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ ++ +V D IGR R +G+A + +A+ Sbjct: 308 DVDDLEVVFNYDLPN-----DAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWA 362 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + ++ + + N I A + Sbjct: 363 KLDLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRM 404 >UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N3K2_9CHLO Length = 663 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 61/410 (14%), Positives = 120/410 (29%), Gaps = 49/410 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY---VTPRERIVQAM 260 P ++ I + ++ ++ + F + T Sbjct: 166 PIQAHAIPIALDAKNDLM-------CCAQTGSGKTCGFLLPVIAKLGTGATTTPEGAAER 218 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLT------QRTQFDLEMMNELGYCSGIENYSRFLS 314 L L +E +RL ++ G + + L Sbjct: 219 AATPAALVMAPTRELAIQIHVEARRLAFDPAAMTSATALRAVVVYGGADAKAQLRELALG 278 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + H+ + + M + + +P Sbjct: 279 VDVLVATPGRLTDFVDRGVVSLARVKHLILDEADRMLDMGFEPQIRKIVLQRDMPPKH-- 336 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---------V 425 A QT+ SAT + + + + D G + + Sbjct: 337 -----------ARQTLMFSATFPDSIQKLAREFLRDYTWIGVGRVGSTVNAIAQHFELAT 385 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVE 484 ++D L++ +A LV KR A + L ++HG R +H D + Sbjct: 386 CDKRHKLDLLIAA-LAKAPPPALTLVFVQKKRTAAWVAGQLSKQHGVRAESIHGDRTQSQ 444 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + + G+ V+V ++ G+D+P V+ V D S + IGR R Sbjct: 445 REAALASFKSGKAPVMVATDVAARGIDVPGVAHVVNFDLP--TAADDFDSYVHRIGRTGR 502 Query: 545 NVN-GKAILYGDK------ITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 G A + +A I R ++K+ +G + Sbjct: 503 AGREGMATSFFVPGFDPKTGNGKIASQIATLLREQKKEAPAFIANGGGGR 552 >UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/Metazoa group RepID=DBP2_ENCCU Length = 495 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 56/366 (15%), Positives = 101/366 (27%), Gaps = 38/366 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + V +++ + L L Sbjct: 132 QTGSGKTLSFILPA---LVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFN 188 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G S + + P L D + + + + + M Sbjct: 189 -LRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRML 247 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + K QT+ SAT + + + Sbjct: 248 D-----------------MGFEPQLRKIIPKTNANRQTLMWSATWPREVRGLAESYMNEY 290 Query: 412 VVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I+EV + D L+ + ++V+V KR +DL Sbjct: 291 IQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFK--GDKVIVFCNMKRTCDDLE 348 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G LH D R +++ D R G +L+ + GLD+ +V LV D Sbjct: 349 YVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFD- 407 Query: 524 DKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 F S + IGR AR G + + + A+ + R + + E Sbjct: 408 ----FPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLE 463 Query: 582 HGITPQ 587 + Sbjct: 464 DMVRVS 469 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 111/670 (16%), Positives = 233/670 (34%), Gaps = 93/670 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A ++L +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH--IEQMRLSA 126 A +L ++ + E ++P + A + + +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEE--------------PGFLPDPSLLPYQRAVSDRNSSLEKMRLAG 112 Query: 127 T--KAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + ++V +V A+ P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 113 ILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQ 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI Sbjct: 173 ESIVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + + + + L L +N E R D+ +NE Sbjct: 232 SPASELFHLGQLTRKDINNRLDIL-------LTDNLNPEFSRTLSA---DINHLNEGLKP 281 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 E ++ + ++ DYLP+D L+V+DE + + + + Sbjct: 282 EYPEFFAPLFNTS-------SILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLS 334 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G E L + + A+ G D + Sbjct: 335 HGELPSVYPRPYFNWAEISAMLKTKKRLIMASFGRESESLKLDF---------ASPDNYV 385 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L ++ + RV++ + A L E L+E Sbjct: 386 ------GRLSGLYEKLPELKGHTGRVVIVS---HQAARLAELLKERSILAVV-------- 428 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + +++ ++ +L G + + +L + DA+ GF++ Q + Sbjct: 429 -QTDVLTPPPPASLSLV--QGILGSGWSLSD-NLHILTDAELFGFVK------QRRLPSK 478 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R K ++ K ++ + G++K+ + + G + Sbjct: 479 RPSARKGVVL-------DIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDK 531 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P + D V + +H L Q A+ E A + +L Sbjct: 532 L---------YVPTDQMDRVNRFIGSGDEPPSLHRLGTQEWQRAKEKASESAEETARELL 582 Query: 664 QL-RELFIAA 672 + + +A Sbjct: 583 DIYAKRELAN 592 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 66/449 (14%), Positives = 127/449 (28%), Gaps = 49/449 (10%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + I+ A + Q E Sbjct: 626 KEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRER 685 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + + R + + + + + +H + Sbjct: 686 LATFPVKVEVLSRFRS------QSEQKEVVENMEKGEVDICIGTHRLLQADIKFKDLGLV 739 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + +SATP L S V D V T Sbjct: 740 IIDEEQRFGVAHKEFF--------KKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSVIET 791 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + VA + L+ I + N +V + L E +++ R Sbjct: 792 PPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARI 851 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + ++ D E DVLV ++ G+D+P + + I AD+ G + Sbjct: 852 GIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQ--- 908 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + A Y K + +R K E G G + Sbjct: 909 -LYQLRGRVGRS-SQLAYAYFL---YDKEKHLSGDAEKRLKTIYEAAELG---AGYGIAM 960 Query: 594 VDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-------GLMMQ 645 D+ G + K G ++V ++ + L + + L+ ++ Sbjct: 961 KDLEIRGAGTLLGVKQSGY--------INSVGFNLYTQMLSEAVAGLKAAGSGLSKEEIR 1012 Query: 646 H----AQNLEFEEAAQIRD-QLHQLRELF 669 A L+ A I + + L Sbjct: 1013 IQNMPAPKLDLPLDAFIPEYYIQDLDLRL 1041 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 103/674 (15%), Positives = 197/674 (29%), Gaps = 54/674 (8%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ---RPTMVLAPNKTLAAQLYGEMK 78 + L + A G+T + A + P +V+AP+++ A L ++ Sbjct: 8 EAIRAVLSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVA 67 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---- 134 F P + P ++P+ DT + S + R++ + Sbjct: 68 FFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLG 127 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV+++ + + + + L L D+ A RL Y R GTF Sbjct: 128 PVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFA 187 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 VRG VID+F R+ELF + VE + LFDP + + + + + ++P V Sbjct: 188 VRGGVIDVFTPLY-RYPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEG 246 Query: 255 RIVQAME-----EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V+ A R+VL + E + T + L + Sbjct: 247 AEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHTHLAPLASYLVAGDA 306 Query: 310 SRFLSGRGPGEPPP------------TLFDYLPADGLLVVDESHVT-IPQIGGMYRGDRA 356 + + L L H ++ Sbjct: 307 PPACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDGRLAFPPSDHYVSPDELRATLAEHAY 366 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV---DQVV 413 R E ++ + A + P + + D Sbjct: 367 RLEARGLEMYQAAADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDNR 426 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L+ + L+ I + V T A L L ++ Sbjct: 427 LLRASLERTRRQAADEL-MKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTA 485 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + ER + L G V + L G + LV + + G Sbjct: 486 HVI------EERSVDVDALSPGAPPV-IYPGELSAGFALRTDKLVMLTADEIFGPR---- 534 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 R + + + ++A I + + + HGI Sbjct: 535 ----------RRTSVRQRAAARRARKALAGGISDFSQLAPGDHVVHAMHGIGLYRG-LAK 583 Query: 594 VDILALGQ--NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + A G + + +G P+ V + + ++ +L G+ Q A+ Sbjct: 584 LPVSATGPAVDFLHIEYRGGQFYLPVYRLGEVSRYVGAEGHAPRLDKLGGVTWQKARKKA 643 Query: 652 FEEAAQIRDQLHQL 665 + + ++L +L Sbjct: 644 SAQVKALAEELLKL 657 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 73/496 (14%), Positives = 136/496 (27%), Gaps = 73/496 (14%) Query: 215 ELFDEEVERLSLFD--PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 + E E F+ P + + + + P V + ++ A Sbjct: 673 DHMFREFEATFAFEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAV 732 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + Q E G+ + SRF S + L Sbjct: 733 AGGKQAALLAPTTVLVEQHYATVCERFA--GWPVSVGRLSRFQSRAEQLDT----IKGLA 786 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 A + +V +H + + + +G + + Sbjct: 787 AGTVDLVVGTHRVLSKDVRFKDLGLLVIDEEQRFGVTHKER--------LKRVRTQLDVL 838 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERV 449 ++ATP L + + D + T D VA D +L E IR+ +V Sbjct: 839 TLTATPIPRTLHLAMSGLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQV 898 Query: 450 LVTTLTKR-----------------------------MAEDLTEYLEEHGE--RVRYLHS 478 ++ E+L RV H Sbjct: 899 FFVCPRIGADPAPSKGKVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHG 958 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + +++ D G ++LV ++ GLD+ + + + AD G + L Q Sbjct: 959 QMSAEALEKVMIDFVSGNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQ----LYQL 1014 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR R+ + + P K + RRR + + E G G D+ Sbjct: 1015 RGRIGRSKQR---AFCYLLVPPPEK-LSSDARRRLETLQRFSELG---AGFQIASHDLEI 1067 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE----GLMMQHAQNLEFEE 654 G + V + L++ + EL GL+ L + Sbjct: 1068 RGGGELLGAKQSG-------AIAAVGFEAYAAMLEEAVAELRSGDAGLVRPRDPELNVDV 1120 Query: 655 AAQIRDQ-LHQLRELF 669 I D+ + + Sbjct: 1121 PGYIPDEYIPDTGQRL 1136 >UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH Length = 712 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 107/357 (29%), Gaps = 29/357 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + E + +++ E R + Sbjct: 315 QTGSGKTAAFLLPMLHHILDNNCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSS 374 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D++ ++ ++ + + M Sbjct: 375 VAKCCVAYGGAAGFHHLKTIHSGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRML 434 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 V + T+ SAT N E + + + Sbjct: 435 DMGFLSSIKTVINHKTMTP-------------TADRITLMFSATFPNEIQELASAFLNNY 481 Query: 412 VVRPTGLL-------DPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDL 462 + G + + P + L+ + A +E++LV KR+A+ + Sbjct: 482 LFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEMCEEILINADDEKILVFVEQKRVADFV 541 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 YL E R +H D +R + + D R G F++LV + GLD+ + +V D Sbjct: 542 GTYLCEKNFRATTMHGDRYQAQREQALTDFRTGVFNILVATAVAARGLDIKGIGVVVNYD 601 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQK 577 + + IGR R G +I + D+ + K + + ++ Sbjct: 602 LP-----KEIDEYVHRIGRTGRLGNRGLSISFYDEEADVCLTKDLVKVLSEAKQTVP 653 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 101/331 (30%), Gaps = 12/331 (3%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L++ + + T+ E +N+ G + R ++ G T Sbjct: 58 PMLHRLVQEERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTV-YGGVNINTQIKK 116 Query: 329 LPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV + I G R L E K Sbjct: 117 LKEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRA 443 Q + SAT + + + + V P V PV + L + Sbjct: 177 QNLMFSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKH 236 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 E VL+ T TK A+ + E LE+ G + L ++ R + R G F ++V Sbjct: 237 TDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVAT 296 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ G+D+ +S V D + + IGR R G A Sbjct: 297 DIAARGIDVSLISHVINYDIP-----DTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTV 351 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKV 593 ++I + + ++++ P Sbjct: 352 RSIEKVLGTKIERRRIEGFDYAVPAPQKDTE 382 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 110/367 (29%), Gaps = 22/367 (5%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + T+ + E + G P L +VV Sbjct: 134 RDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGT 193 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + + L E L K E + Q SAT N Sbjct: 194 PGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPN 253 Query: 399 YELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + D + + ++D + + + ++V Sbjct: 254 SIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVL--EVENYDGIIV 311 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK+ E++ + L+ G ++ DI R + LR G D+LV ++ GLD Sbjct: 312 FVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLD 371 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + +SLV D S + IGR R G AIL+ M + I + R Sbjct: 372 VERISLVVNYDIPH-----DTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATR 426 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ + + + I +++ R I+E D + + Sbjct: 427 QKVEPMHMPTAEAVNETRKQRFAQQITETI------ESEDLSFFRQIIEDYENEHDTTAE 480 Query: 631 ALQQKIH 637 + + Sbjct: 481 DIAAALA 487 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 99/651 (15%), Positives = 204/651 (31%), Gaps = 61/651 (9%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ + L G +T G+ G+ + +A + L+ P + +A ++ A L ++ Sbjct: 29 RPFAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLS 87 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVV 137 F +P+ + + S + RL A + + R Sbjct: 88 FFLGGQGSLLAP-------RVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPA 140 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +V SV A++ P + + + VG D+ ++ RRL + Y + GTF VR Sbjct: 141 LVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVR 200 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G+++D+F D +R+E F + +E + FDP + + V + + P + E Sbjct: 201 GDLLDVFSPLYDK-PVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETR 259 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + A + + L +L ++ L+ + E G+E Sbjct: 260 PR---------AESAARAVADRINLPTIKLREQ----LDALREGLPGFGMEGLLPGFFED 306 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 G L D+ P ++ +D+ + + + R E L Sbjct: 307 GLSTVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPLEHF 365 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQV 432 L E+ + L + + V G + E + Sbjct: 366 LSREDVNQRMQSFRVLEGGG----LSLAQTE-RPPVHFSFGGTQDLREAILAHHGEEGAL 420 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L+ + + + +V T A+ L L + V+ E +E L Sbjct: 421 SPLVERLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVKV------HTEPLEDAVAL 474 Query: 493 RLGEFDVLVGINLLREGL-DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + + G D P L + D + G R R+ A Sbjct: 475 YEPSIRAHLFTGEVSHGFVDGPG-GLAVLADEEIFGARA--------RRRPKRSKKLDAF 525 Query: 552 --LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +GD + R + G+ + + G++ Sbjct: 526 GSGFGDLKEGDLIVHTDFGIGRYAG------LTKMEVNGVPGDFLVLEYAGRDKIYLPVG 579 Query: 610 GRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + D + + + ++ ++ +++ A L AA+ Sbjct: 580 RMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQLLKMAAELLQIAAAR 630 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 56/432 (12%), Positives = 125/432 (28%), Gaps = 38/432 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + + Sbjct: 676 PMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTV 735 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + +SG + + ++ +H G + L Sbjct: 736 EV------ISGLKKAPEVREILKRAKEGKVDILIGTHK--------LLGGEVAFKELGLM 781 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L S V D + T D Sbjct: 782 IVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAI 841 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 V D ++ I + A +V + L +V H + Sbjct: 842 RTFVMKYEDTVVKEAIEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMG 901 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ ++ VL+ +++ G+D+ + + + AD+ G + L Q GR Sbjct: 902 EGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGR 957 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + PS +A+ + +RR + + E G G + D+ G Sbjct: 958 VGRSKER---AYAYLLVPSR-RAVTKDAQRRLEVLQNFTELG---AGFSIASHDLEIRGA 1010 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQI 658 + + DM + L++ + E++G + + A Sbjct: 1011 GNLLGDKQSG-------AIAEIGFDMYAQLLEEAVAEMQGQPPKVQIEPDVTLPMPALIP 1063 Query: 659 RDQLHQLRELFI 670 D + + + + Sbjct: 1064 DDYVSDVHQRLV 1075 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 66/382 (17%), Positives = 113/382 (29%), Gaps = 31/382 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V + ++ P V + + L L E ++L + Sbjct: 40 QRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKG 99 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ + G + S P L D+L + + Sbjct: 100 INI-LAAYGGQDVEQQLRKLKGSIHIIIGTPGRLLDHLRRKTINL--------------- 143 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + L E L Q ++ SAT N + + D Sbjct: 144 --GKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFSATMPNQVRTLAEQYMKDP 201 Query: 412 VVRPTGL----LDPIIEVRPVATQ--VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 V LD I +V T DLL ++ ++ TKR A L E Sbjct: 202 VQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYN-PFMAIIFCRTKRRAIALNEA 260 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G LH D+ +R ++++ + + LV ++ GLD+ V+ + D + Sbjct: 261 LINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVAARGLDIEGVTHIFNYDIPQ 320 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 +G S I IGR R G AI + K I + + QK Sbjct: 321 DG-----ESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVIKMDLDVQKSKSGKID 375 Query: 585 TPQGLNKKVVDILALGQNIAKT 606 + G + +K Sbjct: 376 LDEEEQDTKKSPKGRGNDKSKD 397 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 105/352 (29%), Gaps = 37/352 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + V + + L L + + Sbjct: 46 QTGTGKTGGFLLP-----VLHKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLH 100 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + ++ G + + + P L D++ + L + + S V I + M Sbjct: 101 TNA-VLLVGGVDFIRQERNLKRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRML 159 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 Q++ SAT E + D Sbjct: 160 DMG-----------------FLPDINTIVRQLPKGRQSLLFSATCPPRIQELAATFQNDA 202 Query: 412 VVRPTGLL--------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V+ I V + ++ L + + + +V++ T TKR AEDL+ Sbjct: 203 VIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSETGQVIIFTRTKRSAEDLS 262 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + G LH D R ++ R G+ VLV ++ GLD+ ++ V D Sbjct: 263 IALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDVAARGLDIDGITHVINYDL 322 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 ++ + IGR R G+A+ + + ++I + Sbjct: 323 P-----QTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIETMAGKPIP 369 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 51/389 (13%), Positives = 119/389 (30%), Gaps = 35/389 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++++ ++ L F + + ++ R + Sbjct: 26 YTKPTPIQIQAIPLLLDNHDLLGCA-QTGTGKTAAFALPMIHNLISTRAKPNPKQPRSLV 84 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + R + + E L + + G + + P L Sbjct: 85 LVPTRELAIQVH----ESFVLYGKYTQIRTAVIFGGVGQNPQAKAIASGLDVLIATPGRL 140 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + + M + K + Sbjct: 141 VDLMNQNLVSLKNLEIFVLDEADRMLDM-----------------GFIHDIRKIISYLPK 183 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q ++ SAT + + +V+ + + +E + +LL + Sbjct: 184 RRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHL 243 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++ ++ T TK A ++E L + G + +H + R + D R G+ Sbjct: 244 FKDKNF-KKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRA 302 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV +L G+D+ +++ V + + + IGR AR NG AI + Sbjct: 303 LVATDLAARGIDIDDITHVINYEIP-----YVPETYVHRIGRTARAGKNGIAIAIAEADE 357 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQ 587 S+ K I + + + H + Sbjct: 358 RSLIKDIEKVIGISIPVDRDHPYHAARVE 386 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 110/359 (30%), Gaps = 14/359 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + N+ + + T+ + G + + G Sbjct: 82 TGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGA 141 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + D A L E L + Sbjct: 142 SIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWI 201 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVD 433 E + Q + SAT + + + ++ + D Sbjct: 202 LEQAPESAQRVLFSATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKD 261 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + +S + + + ++ T++ E L ++L G + LH DI R + ++ Sbjct: 262 EAMSRLLETEETDASIV-FVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIK 320 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G D+LV +++ GLD+P ++ V D S I IGR R GKAIL Sbjct: 321 QGVIDILVATDVVARGLDVPRITHVFNYDIPF-----DVESYIHRIGRTGRAGRKGKAIL 375 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 M + I + + ++ + + + + K ++ ++ A G Sbjct: 376 LVRTNQIRMLRTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGL 434 >UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosaccharomyces pombe RepID=DBP3_SCHPO Length = 578 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 31/319 (9%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E E + +L+ + G E + P L D + Sbjct: 244 PTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNASVIIGTPGRLLDLINDG 303 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + ++ + + M + + P + QT++ Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDP------------TRNGSRQTVFF 351 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRA- 443 SAT + + D V G + I+E+ + +L + ++ Sbjct: 352 SATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHL 411 Query: 444 ---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++++L+ L K+ A + L V +H D+ R++ + D + G+ VL Sbjct: 412 SSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVL 470 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GLD+P+V LV F + + IGR R G AI + Sbjct: 471 VATDVAARGLDIPKVQLVIN-----VTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDK 525 Query: 560 SMAKAIGETERRREKQQKY 578 S A + R+ ++ Sbjct: 526 SHAGELVNVLRQAKQDIPE 544 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 104/330 (31%), Gaps = 39/330 (11%) Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD--LEMMNELGYCSGIENYSRFLS 314 + LA E + +E++ D + G + Sbjct: 188 QPPVRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAG 247 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P +L + S V + + M + Sbjct: 248 VNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLD-----------------MGFEP 290 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP 427 + + + QT+ SAT + + + V G + I+E Sbjct: 291 QIREVMQNLPQKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVS 350 Query: 428 VATQVDDLLSEIRQRAAINERV-------LVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + ++D LL+ + + A+ ER +V K +++ E L G R LH Sbjct: 351 ESEKIDGLLALLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGR 410 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER +RD R G ++LV ++ GLD+ V+ V LD ++ + + IG Sbjct: 411 SQAEREAALRDFRNGATNILVATDVASRGLDVTGVAHVINLDLP-----KAMENYVHRIG 465 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETE 569 R R + G+A + + I + Sbjct: 466 RTGRAGSTGQATSFYTDRDVFLVAHIRKAI 495 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 108/330 (32%), Gaps = 20/330 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLL 335 K ++ L + +++ E+ N + G+ ++L ++ Sbjct: 71 KQKKVQALILVPTRELAIQVAKEIKELGK--NKKVYTLAVYGGKSISHQINFLKKGSDVV 128 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + D + L E L + + + Q + SA Sbjct: 129 VVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNLLFSA 188 Query: 395 TPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 T L+ + + + + II + L + Sbjct: 189 TMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--SQNEA 246 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E+V++ T TK A++L E L E G +H D +R ++ + R G+ +LV ++ Sbjct: 247 EKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATDVA 306 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ V LV G R S I IGR R G AI + I Sbjct: 307 ARGLDIKGVDLVINY-----GLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQNI 361 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + + +E ++ +K Sbjct: 362 QKKTKANIEVINEAQEKKLSSAQKDKSSQK 391 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 51/385 (13%), Positives = 113/385 (29%), Gaps = 19/385 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L+ + + T+ + E + G+ Sbjct: 59 AFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ 118 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + + + L E L Sbjct: 119 LRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLS 437 QT SAT + + + + + + L+ Sbjct: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + A + ++ TK ++ E LE +G L+ D++ R + + L+ G Sbjct: 239 FL--EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRL 296 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D+L+ ++ GLD+ +SLV D S + IGR R G+A+L+ + Sbjct: 297 DILIATDVAARGLDVERISLVVNYDIPM-----DSESYVHRIGRTGRAGRAGRALLFVEN 351 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + I T + + + + + L K + ++ + Sbjct: 352 RERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES---SDLDQYRALLS 408 Query: 617 IVEPDNVPMDMSPKALQQKIHELEG 641 ++P ++ + L + ++ Sbjct: 409 KIQPTAEGEELDLETLAAALLKMAQ 433 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 62/415 (14%), Positives = 120/415 (28%), Gaps = 25/415 (6%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + L R ++ E +L E L + + Sbjct: 34 IQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQRLEIGGEPPRLPEALVLVPTRELAM 93 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 ++ + + G+P L +VV T+ IG Sbjct: 94 QVAEAMHRYGRR--LGVQVLSVYGGQPFGQQLRALRRGVHVVVATPGRTLDHIGRGTLAL 151 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 D R L E L + A QT+ SAT +G + + V Sbjct: 152 DGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVLFSATLPPRIAAIAGRHLREPVR 211 Query: 414 RPT----------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + + P A + L + ++ T+ ++LT Sbjct: 212 VKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVL--DMEDPSSAILFCRTRNEVDELT 269 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L G + LH R ++ R G ++LV ++ GLD+ VS V D Sbjct: 270 EALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVATDVAARGLDIEHVSHVINYDV 329 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + IGR R G AI + + + + +R + Sbjct: 330 PC-----APEVYVHRIGRTGRAGREGAAITLVEPREHYLIRNVERLTGQRIEAATLPTVA 384 Query: 583 GITPQGLNKK----VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + L ++ G + +G +++ + ++ A + Sbjct: 385 DLRARRLELTRASLREALIEGGAERFRVVVEGLADEFDVMDIAAAAVKLAHDATE 439 >UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Magnoliophyta RepID=RH5_ORYSJ Length = 512 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 108/337 (32%), Gaps = 20/337 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K + + T+ + + ++ +G + G L + Sbjct: 158 MGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSV-CLYGGTSKGPQISALKS 216 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ I G+ R + L E L + A QT+ Sbjct: 217 GVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTV 276 Query: 391 YVSATPGNYELEKSGGDV-VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI-R 440 SAT + + + + + G D I+EV ++ L++ + + Sbjct: 277 MFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDK 336 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A RVLV L KR A + L+ G +H D +R + + + G ++ Sbjct: 337 YHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLM 396 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P+V +V + + IGR R G A + + Sbjct: 397 IATDVASRGLDIPDVEVVINYSYPL-----TTEDYVHRIGRTGRAGKKGVAHTFFTQENK 451 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 +A + RE Q + KK I Sbjct: 452 GLAGELVNVL--REAGQVVPPALTKFGTHVKKKESQI 486 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 103/640 (16%), Positives = 208/640 (32%), Gaps = 79/640 (12%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 H+ L V I+ + Q T+V+ P+ A +L + E ++ Sbjct: 17 HKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQD--------- 67 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPD 152 P +T S ++ I RLSA + + + + +S + P Sbjct: 68 -----VCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQ 122 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 +L + G + + +L Y +Q + G + VRG ++D+FP S + Sbjct: 123 YLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-VPF 181 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ FD+E++ + FD T + + I + P + T + I + +E Sbjct: 182 RLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETF----- 236 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + + +++ SGIE + TLFDYLP Sbjct: 237 -----------GEIRRDPEHIYQQISKGTLISGIEYWQPLF-----FAEMATLFDYLPEQ 280 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L V E++ T + Y+ + R E R + + L +E + Sbjct: 281 TLFVDMENNQTQGE--RFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRI 338 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + V V + + + EV + Q + L + VL + Sbjct: 339 TFKAEK---------VRSSVRQKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFS 389 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ E L + L + + + + + + +F +LV L +G + Sbjct: 390 VETEGRRETLLDLLSPLKLKPKQI----------QSLEQIENEKFSLLVSS--LEQGFII 437 Query: 513 P-EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + + I +A+ G IQ R R T + + Sbjct: 438 EQSLPVAIIGEANLLG------KRIQQRSRDKR------------KTINPDTLVRNLAEL 479 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + Q + +HG+ G + + + A P+ + + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSD 539 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 +H+L ++ E+ + +L + A Sbjct: 540 ESAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREA 579 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 57/414 (13%), Positives = 120/414 (28%), Gaps = 35/414 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + ++ A + Q + + L Sbjct: 624 MDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFKDRFANL--PVN 681 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E SRF + + + + L + ++ +H I + Sbjct: 682 VEVLSRFKTA----KEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEE---- 733 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + ++ATP L + + D + T + Sbjct: 734 ----HRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIK 789 Query: 426 RPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDT 482 V D ++ I + +V E+ E L R + H + Sbjct: 790 TFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRE 849 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E ++ D ++VLV ++ G+D+P + + I AD G + L Q GR Sbjct: 850 RELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRV 905 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + Y +TP K + + RR + + G G D+ G Sbjct: 906 GRSHHQ---AYAYLLTPPP-KMMTKDAERRLDALENLDNLG---AGFILATHDLEIRGAG 958 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + +++ + + L + L+ + L ++A Sbjct: 959 ELLGNEQSG-------QIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQAD 1005 >UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=Viridiplantae RepID=RH21_ARATH Length = 733 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 49/363 (13%), Positives = 104/363 (28%), Gaps = 12/363 (3%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 S + P Y++ + + E ++ EE Sbjct: 359 TGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGF 418 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 G + P L D L ++ ++V + + M Sbjct: 419 RVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDM 478 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + V + + + + + T SAT + + + VV Sbjct: 479 GFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVV 538 Query: 414 RPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEE 468 G I + + + +++ + +V TK+ + + + L++ Sbjct: 539 VTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDK 598 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G RV LH +R + R ++VLV +++ G+D+P+V+ V D Sbjct: 599 AGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMP---- 654 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + IGR R +G A + + + + + E Sbjct: 655 -KHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVP-PELARHEAS 712 Query: 588 GLN 590 Sbjct: 713 RFK 715 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 96/379 (25%), Gaps = 39/379 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + L F + + + Sbjct: 35 YEEPTPVQAAAIPSVLMMRDLIAVA-QTGTGKTASFVLPMIDIL-----AHGRCRARMPR 88 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++ E + + G + + P L Sbjct: 89 SLILEPTRELA-AQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATPGRL 147 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D +L+ + I + M Sbjct: 148 LDLFERGKILLSSCEMLVIDEADRMLD-----------------MGFIPDIETICTKLPT 190 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 + QT+ SAT + + + + +D + ++ L Sbjct: 191 SRQTLLFSATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDM 250 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R + ++ K L LE+ G V +H D+ ER + + G+ Sbjct: 251 LRAEK--DHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQIS 308 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ GLD+ +S V D I IGR R +G+A+ + Sbjct: 309 VLVASDIAARGLDVKGISHVFNFDVPTH-----PDDYIHRIGRTGRGGASGEALTFVTPA 363 Query: 558 TPSMAKAIGETERRREKQQ 576 AI + + Sbjct: 364 DEEAITAIEKLMGVEIPRL 382 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 69/407 (16%), Positives = 129/407 (31%), Gaps = 38/407 (9%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + A + L L + E +RL + + G G++ S + Sbjct: 63 QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D+L + + + + + + M + Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAID-------------- 168 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--PIIEVRPVATQV 432 F + QT+ SAT SG D + D P IE + T Sbjct: 169 ---DVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSS 225 Query: 433 DDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + +++ + +V TK+ + + + L E G+ LH D++ +R + + Sbjct: 226 KGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLV 285 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 G VLV ++ GLD+ + LV + + IGR AR +G Sbjct: 286 RFANGSARVLVATDVAARGLDIKSLELVVNFE-----LAWDPEVHVHRIGRTARAGNSGL 340 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYN----------EEHGITPQGLNKK-VVDILA 598 AI + A I + + + Q E + G K + Sbjct: 341 AISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV 400 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 LG G + V P +V + + + +L+G ++ Sbjct: 401 LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIK 447 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 69/372 (18%), Positives = 121/372 (32%), Gaps = 19/372 (5%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK--LLEEQRLTQRTQFDL 294 +P + +V + AA +L+ + + + T+ Sbjct: 23 EMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRELA 82 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + + G R L G+ L ++V + IG Sbjct: 83 LQVADEVAKLGKYLKVRAL-AVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTFPA 141 Query: 355 RARKET-LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 K L E L + QT+ SAT + Sbjct: 142 AEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKT 201 Query: 414 R-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + + P +++ L+S + + +V TK+ +++ E L Sbjct: 202 VKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSEL--PIQAIVFCRTKKRVDEVVEQL 259 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G + LH D+ ER + I+ + G+ ++LV ++ GLD+P+VS V D Sbjct: 260 NFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIP-- 317 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 ++ S I IGR R GKAI + + KAI E +R K++ E + Sbjct: 318 ---QNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINKRLKREILPEPVDLE 374 Query: 586 PQGLNKKVVDIL 597 K IL Sbjct: 375 EARFKKIAKKIL 386 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 60/397 (15%), Positives = 123/397 (30%), Gaps = 19/397 (4%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + K + T+ + +++ + +++ G P + + Sbjct: 65 PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKT-GHYVTTVFGGTPYGPQINEIRRG 123 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +++ + + + L E L + QT+ Sbjct: 124 TDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLL 183 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVR---PVATQVDDLLSEIRQRAAI 445 SAT + + G + D V +E + +LL + + Sbjct: 184 FSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGS 243 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + RV+V TK ED E L + G R +HSD +R + + R G +LV ++ Sbjct: 244 D-RVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDV 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 L G+D+P+V V D + IGR R G A+ + + + Sbjct: 303 LARGIDVPDVDHVINFDLP-----DMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 357 Query: 565 IGETERRREKQQKYNE---EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 I + + + + + +G G + A + + E Sbjct: 358 IEKLIGKNVPLMELETYELDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKR 417 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + +A + + G + F+ AA+ Sbjct: 418 DFERRSDSRAEGRSDNR-PGRGKRAEGKRSFDGAAKP 453 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 116/406 (28%), Gaps = 41/406 (10%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A E + E+ + + ++++ G ++ S + P L Sbjct: 74 ALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNPEIIVGTPGRLM 133 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D++ + + +V + + M K Sbjct: 134 DHMNRGTISLSPLKYVVLDEADEMLDM-----------------GFLPDIQKILSQCPRE 176 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRA 443 QT SAT + E + + + + E + + + Sbjct: 177 RQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRII 236 Query: 444 AINERVL--VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + + + TKR A++L L G LH D+ ER ++ R G +LV Sbjct: 237 DAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 +L GLD+ V+ V D S I +GR R G AI + Sbjct: 297 ATDLAARGLDIELVTHVFNFDIP-----EDLDSYIHRVGRTGRAGRSGIAITLVEPTQIR 351 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + I +R ++ Q++ + + V Sbjct: 352 LLRMIERHTGKRIERALLPTLAEAV------------EKRQDLLLERVRQASAEPGDVCL 399 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 M ++ + L++ + E E + D + L Sbjct: 400 SLAEKLMQQGDPEKMLAAALKLLIDEEPDFEMAELPESDDSMAHLE 445 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 51/376 (13%), Positives = 108/376 (28%), Gaps = 19/376 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L A + + T+ ++E G + + G Sbjct: 65 HHLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGK-YLALRTTVVFGGVNIEP 123 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L ++V + + + L E L K Sbjct: 124 QITELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALL 183 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIR 440 Q++ SAT + + + G + V ++ I + + + + Sbjct: 184 PSQRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLL 243 Query: 441 QRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ LV TK A L + L H +H D + +R + + + + G+ Sbjct: 244 HLVKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQ 303 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ G+D+ ++S V + + + IGR R GKAI + Sbjct: 304 ILVATDVAARGIDIEKLSHVVNYELP-----GNPEDYVHRIGRTGRAGSKGKAISLVSEH 358 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + +I + + E I V + ++ A+ K + Sbjct: 359 ETELLTSIEKLLNTKL------EIEQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEV 412 Query: 618 VEPDNVPMDMSPKALQ 633 + + Sbjct: 413 ANGEKTRKYSGSRRSA 428 >UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7_9CHLO Length = 462 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 98/330 (29%), Gaps = 23/330 (6%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD--GLLVVDE 339 + + T+ + ++ +G R + G P + ++V Sbjct: 121 PQCLVLAPTRELAQQTAKVFEDAGTACGVRCV-CVYGGAPKWEQKKLMQQGGGCAVIVAT 179 Query: 340 SHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 G + D+ L E L + + QT+ SAT Sbjct: 180 PGRLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPT 239 Query: 399 YELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINE--- 447 + + + V G + ++EV + L +++ + Sbjct: 240 SIQGLAAEFMCNPVKVRIGAEGLKASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVP 299 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 R LV L K+ L E L + +H D+ +R + + G +L+ ++ Sbjct: 300 RTLVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAA 359 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ V V + + IGR R G A + + + A + Sbjct: 360 RGLDIKGVEYVINYTFPL-----TTEDYVHRIGRTGRAGQTGLAHTFFTQHDKARAGELA 414 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDI 596 RE + + KK + Sbjct: 415 NVL--REAGAEVPTALTAFGTHVKKKESKL 442 >UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Ciona intestinalis RepID=UPI00006A5795 Length = 573 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 53/415 (12%), Positives = 109/415 (26%), Gaps = 55/415 (13%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + + + + +A E E Sbjct: 191 QTGSGKTLSFILPALIHI-----QAQRPLGRGEGPIALVMCPTRELAVQCERVANQFAGP 245 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 F G I+ P L D+L + + +++ + + M Sbjct: 246 FIRTACAYGGSSRNIQLDKIGAGCSILVATPGRLMDFLQHGEVNLRRCTYLVLDEADRML 305 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV--V 409 + + K E Q SAT + + + + Sbjct: 306 D-----------------MGFEPQIRKIIEQIRPDRQVTMWSATWPSEIRQLAKDFISTK 348 Query: 410 DQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINE-------RVLVTTL 454 G + + + I + N+ + LV Sbjct: 349 SATHIKVGSSDLQASENIQQKFAICHSPDKFKQFKEIIIELKNANKDQFSQFPKTLVFCN 408 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK + L++ L G R +H D +R ++ + R G ++L+ ++ GLD+ + Sbjct: 409 TKATCDRLSQQLRNAGLRSNAIHGDKTQSQRDSVLNNFRRGRSNILIATDVAARGLDIND 468 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 + V D + I IGR R G + + ++ K + Sbjct: 469 IQYVINFDTP-----PTCTDYIHRIGRTGRAGKQGTSYTLLTEENGAIVKDL-------- 515 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 E K+ + AK + + + + +N Sbjct: 516 --ISSLEVINHEVDPKLHKMQQWWIQNRTKAKPRQRPQTRRFKNDHYNNRRNRHY 568 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 59/382 (15%), Positives = 123/382 (32%), Gaps = 15/382 (3%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + L+ L + +++ EL S L G+P L Sbjct: 63 LENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVL-PVYGGQPIDRQIKALQ 121 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +++ + I + + L E L E Q Sbjct: 122 KGVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQF 181 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN 446 + SAT L+ + + + + P +E + + D L + + ++ Sbjct: 182 LLFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLH 241 Query: 447 E--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + LV TKR + L +L+ G LH D+ +R ++ + G ++LV + Sbjct: 242 DFDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATD 301 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + G+D+ V V D + + IGR R GKA + + Sbjct: 302 VAARGIDVGGVEAVFNFDIPNDN-----EYYVHRIGRTGRAGKTGKAYSFVSGREIYQLR 356 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + + +Q + + + ++ +K + +VE D Sbjct: 357 DIQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIE--KLVEEDYN 414 Query: 624 PMDMSPKALQQKIHELEGLMMQ 645 +D++ L+ I + + Sbjct: 415 SIDIAATLLKGVIDDKRYKEEE 436 >UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4DBF7_TRYCR Length = 622 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 99/324 (30%), Gaps = 33/324 (10%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L E +++ +R G G + + P Sbjct: 144 PIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTLRAGVHVAIATPG 203 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D L ++ +++ + + M + K Sbjct: 204 RLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIR-----------------KICSQI 246 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPVATQVDDLL 436 QT+ SAT + D + G D + + L Sbjct: 247 RSDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRL 306 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLG 495 EI Q+ +RVL+ TKR A+ L L G V +H D + +R ++ R Sbjct: 307 EEILQKLGR-QRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRD 365 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 + VLV ++ GLD+ + +V D + + IGR R G A + Sbjct: 366 DRSVLVATDVAARGLDIKNLDVVINFDMPT-----NIEDYVHRIGRTGRAGQRGDAYSFV 420 Query: 555 DKITPSM-AKAIGETERRREKQQK 577 PS + + + RR ++ Sbjct: 421 SGADPSKTIRDLVDLLRRANQEVP 444 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 114/367 (31%), Gaps = 37/367 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + T R + LA R++ + + ++ + + Sbjct: 112 QTGTGKTAAFGLPMLTRL-LNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIR 170 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G ++ P L D + + + ++ + + M Sbjct: 171 QFRVV---GGASINVQVQRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQML 227 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT+ SAT E + + D Sbjct: 228 DIGFIHALR-----------------RIAKMLPRERQTLLFSATMPKLMEELADSYLNDP 270 Query: 412 VVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + E LL+E ++E +V TK +E L + Sbjct: 271 LRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLS-KHVDELAIVFGRTKHGSEKLCKL 329 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L++ G +V +H + +R + R GE VLV ++ GLD+P+V+ V D Sbjct: 330 LDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVATDVAARGLDIPQVAHVYNYDLPN 389 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE---KQQKYNEE 581 + + IGR AR G+AI + +AI + + + ++ E Sbjct: 390 -----VPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAIEKAMKAKIAVVGGEEPFEA 444 Query: 582 HGITPQG 588 I +G Sbjct: 445 AKIRERG 451 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 97/355 (27%), Gaps = 32/355 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I R + IK + + L ++ E R Sbjct: 46 QTGTGKTAAFAIPILQLLSEERSKSTGGPRRIKTLILTPTREL--AIQIAESFTAYGRHL 103 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D + + + D + + M Sbjct: 104 NIRNTVIFGGVSQHSQVNTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRML 163 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 K Q+++ SAT + + + + Sbjct: 164 DMGFIH-----------------DVKKVITKLPTHRQSLFFSATMPPDVAKLADTILNNP 206 Query: 412 VVRPTGLLDPIIEVRPV------ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + LL I I + LV TK A+ + + Sbjct: 207 AKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHILDDKNI-KSALVFARTKHGADKVVKD 265 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + G +H + R + + + E VLV ++ G+D+ E+S V + Sbjct: 266 LLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLVATDIAARGIDVDELSHVINYELPN 325 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + + IGR R + G A+ + D + I + +R + Sbjct: 326 I-----PETYVHRIGRTGRAGHDGIALSFCDAEETEYLRDIHKLIGKRVPVIDNH 375 >UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax=Eukaryota RepID=DDX3_DICDI Length = 712 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 101/406 (24%), Gaps = 51/406 (12%) Query: 232 GQIVSTIPRFTIYPKTHYVT-------PRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F + + P + L L E Sbjct: 292 QTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEAN 351 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + ++ G + L D L + + ++ + Sbjct: 352 K-FSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVL 410 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----ALAPQTIYVSATPGNYE 400 + M L + + + QT+ SAT Sbjct: 411 DEADRM-----------------LDMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQI 453 Query: 401 LEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + + G + IE + LL + + L+ Sbjct: 454 QNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNSYLLDYLSGLKSDG-LCLIFVE 512 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKR + LT +L + +H D+ ER ++ R LV ++ GL + Sbjct: 513 TKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGN 572 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 V+LV D + IGR R G AI + ++ + + + + Sbjct: 573 VNLVINFDLPT-----DIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASN 627 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + P K V ++ KS Sbjct: 628 QDI---------PDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHH 664 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 48/342 (14%), Positives = 104/342 (30%), Gaps = 12/342 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L + + + ++ + + + G+ Sbjct: 52 TGKTAAFGIPAIELCQPANRNVQTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQ 111 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +++ I I D L E L + Sbjct: 112 PIERQIKALSRGVQIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEI 171 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLL 436 QT+ +SAT L+ S + + + P IE + + Sbjct: 172 LSHIPKERQTVILSATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKA 231 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + +R ++ T+ + ++ L+ G LH + +R +++ R Sbjct: 232 DTLIRVLEFYQPQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRK 291 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ ++L+ ++ G+D+ E+ LV D F + + + IGR AR G+AI + Sbjct: 292 GQLEILIATDVAARGIDVEEIDLVCNFD-----FPQDDEYYVHRIGRTARAGRTGRAISF 346 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + + R + I + + D Sbjct: 347 VSPRERYRLRDVRRSTRAEPEPLPIPTLREIGGKKATTTLAD 388 >UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D4DD Length = 684 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 98/349 (28%), Gaps = 46/349 (13%) Query: 232 GQIVSTIPRFTIYP-KTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQR 289 F + Y + + + E ++ +E R Sbjct: 286 QTGSGKTAAFLVPILNQMYQRGPQNNRPYSHRKQYPMGLVLAPTRELATQIYDEARKFSY 345 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + P L D L D + + + + + + Sbjct: 346 RSRLRPCVVYGGSYLQDQFRELEKGCHLLVATPGRLADMLDRDKIGLENCKFLVLDEADR 405 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + + QT+ SAT + ++ Sbjct: 406 MLDMGFEPQIRRIVEKDMPRTG--------------ERQTLMFSATFPDVIQADKRSFLL 451 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 D LL+ R + LV T++ A+ L EYL Sbjct: 452 D------------------------LLNATRYKNGTESLTLVFVETRKGADCLEEYLHYQ 487 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G V +H + ER + +R R GE +LV + GLD+ V+ V D Sbjct: 488 GYPVSCIHGERSQREREDALRRFRSGETPILVATAVAARGLDISHVTHVINFDLP----- 542 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R N G A + ++ ++ + + E + Sbjct: 543 SDIEEYVHRIGRTGRMGNLGVATSFFNEKNRNIVRDLVELLTETNQDLP 591 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 122/402 (30%), Gaps = 22/402 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + ++ L + +++ +L S + + G Sbjct: 61 TGKTGAFGIPLIEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQ--GVQVVTVFGGM 118 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV I + + D L E + + Sbjct: 119 PIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFI 178 Query: 380 EEFEAL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDL 435 + QT+ SAT + + T DP IE + + Sbjct: 179 MDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEK 238 Query: 436 LSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 E +V TKR ++LT L G + LH DI +R+E+++ + Sbjct: 239 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFK 298 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 + ++LV ++ GLD+ VS V D + S IGR R G A+ Sbjct: 299 NDQINILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVT 353 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + I + I + R+ + + DI +N K++ Sbjct: 354 FVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAR----EDDIKEKVENWMSKKSES-- 407 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + + + + EL + L FE+ Sbjct: 408 -RLKRISTELLNEYNDVDLVAALLQELVEANDEVEVQLTFEK 448 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 95/327 (29%), Gaps = 12/327 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ + + T+ + + G+ Sbjct: 53 TGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQ 112 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV + I + R L E L + Sbjct: 113 PIEPQASALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERI 172 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLL 436 Q+ + SAT + LE + + + + + E + + Sbjct: 173 LSEMPEWVQSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRV 232 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + I + +V TK+ ++L L++ G LH D++ +R ++ R Sbjct: 233 DAVCRIFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRA 292 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G VLV ++ GLD+ +V V D + + IGR R G+A + Sbjct: 293 GGISVLVATDVAARGLDVDDVDTVINFDLPN-----DPETYVHRIGRTGRAGRTGRAFSF 347 Query: 554 GDKITPSMAKAIGETERRREKQQKYNE 580 + I R ++ Sbjct: 348 AAGRDVYKLRDIQRVTGSRIDRRAMPT 374 >UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Actinomycetales RepID=A4X1W4_SALTO Length = 621 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 105/353 (29%), Gaps = 15/353 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + L R E + + T+ Sbjct: 123 IQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLERVFAPAEGGDGTPQALVVVPTRELG 182 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRG 353 + + + +G R L G + L ++V + + Sbjct: 183 IQVAKDLHAAGSTRGVRVL-PIYGGVAYEPQIEALRTGVEILVGTPGRLLDLAKQKQLKL 241 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 DR R L E L + K QT+ SAT + + S + V Sbjct: 242 DRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQTMLFSATMPDPIVALSRRFLRRPVT 301 Query: 414 RPTGL-----LDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYL 466 G P + T + + + + R ++ T TKR A+ + L Sbjct: 302 IHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARILQAKGRGLTMIFTRTKRAADRVAADL 361 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G V +H D+ R +R R G+ D LV ++ G+D+ V+ V D Sbjct: 362 DFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVATDVAARGIDVSGVTHVLNYDCP-- 419 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + IGR R +G A+ + D + I +T + Sbjct: 420 ---EDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRIIDKTLGLEMPEPPE 469 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 64/413 (15%), Positives = 127/413 (30%), Gaps = 12/413 (2%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +N + + T+ + + + ++ G Sbjct: 54 TGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGS 113 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + F L VV + I + + R L E L + Sbjct: 114 DFGSQFRALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWV 173 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLL 436 + Q SAT + + + + IE + + D Sbjct: 174 LDQVPEKRQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKN 233 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + + ++V TK+ E++ +Y+ HG R L+ D+ +R + L+ Sbjct: 234 QALLRICETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKK 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ D+LV ++ GLD+ +S V D S + IGR R G+AIL+ Sbjct: 294 GQVDMLVATDVAARGLDVERISHVVNYDIP-----YDAESYVHRIGRTGRAGRSGEAILF 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 M I R++ +Q + + + ++ V L + K Sbjct: 349 VRPRERRMLSTIERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIAS 408 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +P P++++ Q M + + E R + + R Sbjct: 409 EILAEQPALDPIELAAAFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERR 461 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 115/392 (29%), Gaps = 20/392 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +E+ + + T+ + + ++ G Sbjct: 52 TGKTAAFGIPAVERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGA 111 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L A +++ + + R D R L E L + Sbjct: 112 PMDAQIRALRAANIVI-GTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTI 170 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVD 433 QT+ SAT L+ + + D I R + Sbjct: 171 LAETPDTRQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKM 230 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D L+ + Q +R +V TK M + LTEYL +HG R +H D+ R ++++ R Sbjct: 231 DALNLLLQYHD-PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFR 289 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ +LV ++ G+D+ + V D + I IGR R G + Sbjct: 290 DGKTRILVATDVAARGIDVENIEAVFNFDIP-----QEFEHYIHRIGRTGRAGRTGMSHT 344 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + RR I + + KK A + G+ Sbjct: 345 LVC---GARQVDTIRQLRRFINADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKW 401 Query: 613 KSRPIVEPDNVPMDMSPK--ALQQKIHELEGL 642 + DM AL Q I + Sbjct: 402 GEQLDAIAAERGCDMRDIACALAQMIAARDKK 433 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 52/400 (13%), Positives = 110/400 (27%), Gaps = 18/400 (4%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + L + ++ + + ++ + + Sbjct: 40 QDVLGIAQTGTGKTAAFTLPLIDKLMNGRAKARMPRALVIAPTRELADQVASSFEKYAKG 99 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 S L G L +++ + + + E Sbjct: 100 TKLSWALL--IGGVSFGDQEKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEAD 157 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--- 422 L + + QT++ SAT + + D V Sbjct: 158 RMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNEN 217 Query: 423 -----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 ++V + L A E +V K + + + L+ HG +H Sbjct: 218 ITQLMVKVPSSDPKAKRLALRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIH 277 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 D+D +R + + R G +LV ++ GLD+P VS V D + Sbjct: 278 GDLDQSQRTKTLAAFRDGSLKILVASDVAARGLDIPAVSHVFNYDVPHH-----ADDYVH 332 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 IGR R G + + + ++K + ++ + ++ Sbjct: 333 RIGRTGRAGRSGVTYMLVTPADDKGFDKVVKLIGSTPTEEKLDLDYSGAV-TIKREGDKR 391 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + RG+ R P D++ L+ I Sbjct: 392 GGGRDRAPRGGDRERGRDRDRNRAPTEPSDVAAANLEAAI 431 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 125/402 (31%), Gaps = 22/402 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + ++ L + +++ +L S + + G Sbjct: 50 TGKTGAFGIPLIEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQK--VQVVTVFGGM 107 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV I + + L E + + Sbjct: 108 PIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFI 167 Query: 380 EEFEA-LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDL 435 + QT+ SAT E + + T DP I+ + + Sbjct: 168 MDKIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEK 227 Query: 436 LSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 E +V TKR ++LT L G + LH DI +R+E+++ + Sbjct: 228 FDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFK 287 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 + D+LV ++ GLD+ VS V D + S IGR R G A+ Sbjct: 288 NDQIDILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVT 342 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + I + I + RR K + + DI QN + + R Sbjct: 343 FVNPIEMDYIRQIEDVNNRRMKALRPPHRKEVLKAR----EDDIKDRVQNWMSRENEPRL 398 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + + S + + + EL + L FE+ Sbjct: 399 QRIS---SELLKEYDSTELVASLLQELVEANDEVEVQLTFEK 437 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 106/663 (15%), Positives = 197/663 (29%), Gaps = 79/663 (11%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 R + L + L G + +A +A L+RP +++ P A + F Sbjct: 24 REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDVVVVA 140 + V + +PS + R+ A V V Sbjct: 84 GNDLHRQDVPA---DRRVWCLPSRSGQKSQSLGK-MATMARRMETLHAFRASIGSNVFVT 139 Query: 141 SVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 S A+ L P++ L + G ++ + L E Y R + G F +RG V Sbjct: 140 SAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGV 199 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D++ LR+E F +E+E + LF P T + + + + P + + +A Sbjct: 200 LDVYAPLY-RWPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARERA 258 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP- 318 E + + E + L+ + E E+ + Sbjct: 259 REAVY-------------ADVREGRLTPAAGNVWLDKLQEGHQFGAFESIMSVFYEKTVT 305 Query: 319 ---GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P T+ + +D L + + + + R PS L Sbjct: 306 VWNYLDPATVV--VWSDALQIRKIMEEFFLHASRDWNENHSPH-----EWRRPPSELLEI 358 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ---V 432 P + Q I S + G +G + VR A + + Sbjct: 359 PERLIADGESFQQLIVNSLSGGTEPRAVFDMG-------TSGHEQLALSVRAHAEKERLL 411 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L + ++ + K A L+E LE HG + Sbjct: 412 EPLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHGTDTVL------------TLLPF 459 Query: 493 RLGEFD---VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 ++ V V + L G P L + + + G R R +GK Sbjct: 460 GAESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGK------------RTRR-RSGK 506 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 ++ + Y E + +G+ + Sbjct: 507 SVSGLFLSSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESD---------FLLLEYQD 557 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL-REL 668 G P+ + V + + Q KI +L G + A+ E A ++ ++L L + Sbjct: 558 GDRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSLYAKR 617 Query: 669 FIA 671 I Sbjct: 618 QIG 620 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 60/441 (13%), Positives = 127/441 (28%), Gaps = 39/441 (8%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P + + ++ A + Q Q E Sbjct: 657 DMASRRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQSFTERFE 716 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+ +E SRF + + L + VV +H + Sbjct: 717 --GFPVVVETLSRFKTP----AQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLVI 770 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + ++ + ++ATP L + + D T Sbjct: 771 DEEHRFGVKHKER--------MKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPP 822 Query: 419 LDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RY 475 D IE + + + + +V + + Sbjct: 823 QDRHAIETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQSIYQTANAIGRLIPEAKIAV 882 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + + +++ D + DVLV ++ GLD+P + + I ADK G + Sbjct: 883 AHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQI---- 938 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + + P I ++R + E G G + D Sbjct: 939 YQLRGRVGRSSEQ---AFAYLLIPGE-HLISRDAQKRLRALLDFSELG---AGFKIALND 991 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEF 652 + G ++ V ++ + L++ I E++G + + Sbjct: 992 LQIRGGGTILGSSQSG-------HIAAVGYELYLELLEKTIKEMKGEERETESIDPEINV 1044 Query: 653 EEAAQIRDQ-LHQLRELFIAA 672 +A + + + + IA Sbjct: 1045 PLSAFLPETFIPDKDQRLIAY 1065 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 61/392 (15%), Positives = 111/392 (28%), Gaps = 20/392 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + G E + G P L +VV I Sbjct: 77 LVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLSQPVDVVVATPGRLI 136 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + R L E L + QT+ SAT Sbjct: 137 DHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQTLLFSATLDGVVGNL 196 Query: 404 SGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + D ++ + + LL + + + + +V TK Sbjct: 197 ARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLRDVEM-VQAIVFASTK 255 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 R E++++ L E G LH D+ +R ++ LR G VLV ++ G+D+ +S Sbjct: 256 RSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDVAARGIDVASIS 315 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 V D R + IGR R G A+ + + K I R Sbjct: 316 HVINFDLP-----RQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKNIERYTGNR--- 367 Query: 576 QKYNEEHGITPQGLNKKVV--DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + G+ P + G K R + + Sbjct: 368 IEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKRSFGDRSEPRSYGDRPRGDSRDNR 427 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + A F+ + + ++ Sbjct: 428 DRGYRGDARRNDGAPARRFDNGVRGPSDVPRM 459 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 101/618 (16%), Positives = 182/618 (29%), Gaps = 89/618 (14%) Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + AA+L + F P V F P+ D S N I Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILF-------------PAWDCLPYDRVSPNGDIVAR 91 Query: 123 RLSATKAMLE----RRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLA 177 R+ A +LE R +++V +V+A P + VG I+ + R LA Sbjct: 92 RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y + + G F VRG ++D+FP + + LR++LF ++++ + FDP+T Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F + P + I + +E A E + Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRELFGAVTGD-----------------DPLYEAV 253 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 + +G+E++ TLFDY+P + + Q R Sbjct: 254 SAGRKYAGMEHWLPLFHSGL-----ETLFDYMPDAPVTLDPHVEEARDQRLEQVRDFFEA 308 Query: 358 KETLVEYGFR---------------LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + TL E + L + + L L P + + + Sbjct: 309 RRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHLAVRPVAQLTPFAAAEAGSNPDLTDA 368 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D + +V L + A RV+V + + L Sbjct: 369 GGRKG-RDFADARVQSGVNVYDV---------LREHVGALLADGRRVVVAGYSTGARDRL 418 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+EHG E+ R V++ ++ G P L I + Sbjct: 419 RSVLKEHGIERV-----KAVESWAEVEGLPRTTTALVVLALDH---GFTAPG--LAVITE 468 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 D G + RA +A + S +Y+ Sbjct: 469 QDILGD---------RLVRAGGRKKRRAANFI--AEASGLNPGDLVVHIDHGIGRYDGLE 517 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP--MDMSPKALQQKIHELE 640 + G + ++ G + + D+ + Q + ++ Sbjct: 518 TLDVGGAPHDCLRLVYEGGDKLYVPVENIEVLSRYGSEDSAGQLDRLGGAGWQSRKARVK 577 Query: 641 GLMMQHAQNLEFEEAAQI 658 + A L A + Sbjct: 578 KRLKDMAAALLRIAAERA 595 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 57/400 (14%), Positives = 122/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q + + L Sbjct: 640 PMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPVRL 699 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + + + + L D + +V +H + + R + + Sbjct: 700 GQLSRLA--TAKETAQTKAGLAD----GTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHF 753 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L+ + V + + T +D + Sbjct: 754 GVKQKERLKELRADI--------HVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAV 805 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V ++ I + + E + LEE V+ + H + Sbjct: 806 RTFVLPYDPVVIREAILREHYRGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMP 865 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ ++DVL+ N++ GLD+P + + + AD G + L Q GR Sbjct: 866 ASQLEEVMTAFDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQ----LYQVRGR 921 Query: 542 AARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R G A L T + T ++R + + G G D+ G Sbjct: 922 VGRAKVRGYAYLTYQPRT-----VLSATAQQRLHVIETLDSLG---AGFQLASHDMDIRG 973 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + V +++ + L++ + + Sbjct: 974 AGNLLGEEQSG-------HIREVGVELYQQMLEEAVADAR 1006 >UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=rosids RepID=RH5_ARATH Length = 537 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 115/349 (32%), Gaps = 20/349 (5%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + I L +K+ + K+ + T+ ++++ +G + + G Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSI-CVYGG 228 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLK 378 + + +V+ I + R L E L + Sbjct: 229 SSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRF 288 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLD--------PIIEVRPVA 429 Q + SAT + + + + + G +D IIEV Sbjct: 289 ILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDER 348 Query: 430 TQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L++ + + + RVLV L K AE L +L++ G + +H + ER Sbjct: 349 ARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRS 408 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + + G +LV ++ GLD+P+V +V + + IGR R Sbjct: 409 LSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPL-----TTEDYVHRIGRTGRAGKK 463 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 G A + + +A + RE Q + + KK + Sbjct: 464 GVAHTFFTPLNKGLAGELVNVL--REAGQVVPADLLKFGTHVKKKESKL 510 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 105/362 (29%), Gaps = 15/362 (4%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV-LLENNK 279 + L T + + + + L + + Sbjct: 35 IATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDN 94 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T+ + + E ++ R G L ++V Sbjct: 95 RTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQ-LEKGTDILVAT 153 Query: 340 SHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I R L E L + K + QT+ SAT Sbjct: 154 PGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPK 213 Query: 399 YELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQRA--AINERVLVT 452 + +G +VD V D + + +D +R+ + R +V Sbjct: 214 AIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAMVF 273 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK AE L ++LE G V +H + +R ++ R G L+ ++ G+D+ Sbjct: 274 LRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDI 333 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 P VS V D + + IGR AR G AI + + + I Sbjct: 334 PAVSHVYNYDLP-----EVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLMGI 388 Query: 572 RE 573 Sbjct: 389 DI 390 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 97/352 (27%), Gaps = 32/352 (9%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ + R + E G + P L D++ + V Sbjct: 85 QISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDVCG 144 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I + M+ + QT+ SAT Sbjct: 145 VETLIIDEADRMFDM-----------------GFQPDIQSILKCLVQPHQTLLFSATMPP 187 Query: 399 YELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + V G + Q LL EI + + VL+ Sbjct: 188 EVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVET-KSVLIFA 246 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK AE+L + + + G L ++ R ++ R G F +LV ++ GLD+ Sbjct: 247 RTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDID 306 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 +S V D S IGR R G+A M + I Sbjct: 307 HISHVINYDMP-----DSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSSP 361 Query: 573 EKQQKYNEEH--GITPQGLNKK-VVDILALGQNIAKTKAKGRGKSRPIVEPD 621 ++ + + G N+ D + + D Sbjct: 362 IQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTD 413 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 54/403 (13%), Positives = 111/403 (27%), Gaps = 49/403 (12%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + P + I + + FT+ +E++ Sbjct: 22 GITSPTPVQKKAIPV--------LLSGQDVIAQAQTGTGKTIAFTLPILQRIDIDKEQVQ 73 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + ELA + L+ ++ G + S Sbjct: 74 ALILTPTRELAIQITSELKKLAAAVGAKVLA---------AYGGQDVDAQIRKLNNSPHI 124 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D++ + + + + + + M Sbjct: 125 VVATPGRLIDHMRRETINLGKLKMLVLDEADQML-----------------HMGFLPEVQ 167 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVAT 430 + A QT+ SAT + + + V + ++ Sbjct: 168 NIVDQTPRARQTMLFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRG 227 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L+S I ++ TK A+ L + L++ G LH D+ +R ++++ Sbjct: 228 RQKALISMI--ETQRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMK 285 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 R + +LV ++ GLD+ V+ V D I IGR R G Sbjct: 286 RFRDAKLQILVATDVAARGLDVEGVTHVFNFDVPT-----DSEIYIHRIGRTGRAGQRGT 340 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 AI + I + +++ + I + Sbjct: 341 AITIASPYDRAAVAHIERSINAILERRTIEADGTIVKNTAPRS 383 >UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791A51 Length = 641 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 50/370 (13%), Positives = 106/370 (28%), Gaps = 31/370 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER-IVQAMEEIKEELAARRKVLLENNK 279 + F + ++ + + L L + Sbjct: 256 IMNGKDMIASAQTGSGKTAAFVLPILNSLISEPSELVFDYNHCEPQCLILSPTRELASQI 315 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 +L+ T G + P L D++ + Sbjct: 316 SSFAFKLSNGTS-IRCRALYGGTAVYHQREKILSGVHIIVATPGRLIDFVNRGLITFSSL 374 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + + + T+ SAT Sbjct: 375 RFIVLDEADRMLDMGFTPAIQCIFSDNTM-------------VSSAERSTLMFSATLPID 421 Query: 400 ELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + D + G + ++ ++L+ + + +V Sbjct: 422 VQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKKNELV-ALLNETNDCQGTIV 480 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 KR A+ + +L E +H D + ER + +RD + + VLV + GLD Sbjct: 481 FVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDFKTKKMKVLVATAVAARGLD 540 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS-MAKAIGETE 569 + V+ V D ++ + IGR R +G+A+ + D S MA + T Sbjct: 541 IMGVTTVVNFDLP-----KTIEEYVHRIGRTGRLGNSGRAVSFYDPDNDSAMAPYLVNTL 595 Query: 570 RRREKQQKYN 579 +R ++ Sbjct: 596 KRADQNIPEF 605 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 61/412 (14%), Positives = 127/412 (30%), Gaps = 15/412 (3%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L D ++ L + V + I + + + Sbjct: 6 LDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINELSK 65 Query: 274 LLENNKLLEEQRLTQRTQFD--LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + + ++ + + + G G L Sbjct: 66 GCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEM 125 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ + I G + L E L + ++ + QTI Sbjct: 126 GADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTI 185 Query: 391 YVSATPGNYELEKSGGDVVDQ--VVRPTGLLDPIIEVRPVATQVDDLLSEIRQR--AAIN 446 SAT + + D V I L ++ + Sbjct: 186 MFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRP 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +RV++ + +K ++L L+ V +HSD++ +R E++++ + G D+LV +++ Sbjct: 246 QRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVV 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAKA 564 G+D+ ++ LV D + IGR AR G AI + + K Sbjct: 306 ARGIDINDIKLVVNFDIPH-----DPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKR 360 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 I + + + + E G P +K + G+ + S P Sbjct: 361 IEDFLEKEVYKIPVSPEFGEVPLYEPEKYG-MNKRGRGRPRKSEDKGSSSSP 411 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 110/380 (28%), Gaps = 32/380 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ ++ E +E L L F I + + + Sbjct: 24 YSEATPIQAEAIPHLLEGLDLLGCA-QTGTGKTAAFAIPILQSLAMGQGLLKGKRQIRAL 82 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 LA R++ + + + + + G + P L Sbjct: 83 VLAPTRELATQIAESFTAYGVNLPLRTL---VIFGGVGQAPQTRKLEKGIDILVATPGRL 139 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + H + + M + + Sbjct: 140 LDLINQGFIDLSHVEHFVLDETDQMLDMGMLH-----------------DVKRIITYLPR 182 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQR 442 Q + SAT + + + V IIE + + + Sbjct: 183 ERQNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYW 242 Query: 443 AAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 NE VLV + TK A+ + + L + G +H + R + + + + +L Sbjct: 243 LKNNEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRIL 302 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GLD+ E+S V + + I IGR R GKAI + D Sbjct: 303 VATDIAARGLDIQELSHVINYNLP-----EVPETYIHRIGRTGRAGLGGKAITFCDFEEK 357 Query: 560 SMAKAIGETERRREKQQKYN 579 + + I + + + K + Sbjct: 358 PLLRDIQKRIGKTLPEVKEH 377 >UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukaryota RepID=DBP3_NEUCR Length = 614 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 62/388 (15%), Positives = 118/388 (30%), Gaps = 50/388 (12%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F++ + + + + A E + L Sbjct: 228 GKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQTHAALSGLASLVGLS 287 Query: 296 MMNELGYCSGIENYSR---FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G E + P L D+L + + + S + + M Sbjct: 288 AVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFLSEGSISLANVSFAVLDEADRMLD 347 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + L+ G QT+ +AT + + +++ Sbjct: 348 RGFSEDIKLILSGCPPKEQ---------------RQTLMFTATWPLDIQKLAESYMINPA 392 Query: 413 VRPTG---------------------LLDPIIEVRPVATQVDDLLSEIRQRAA---INER 448 G ++ +EV + L +++ ++R Sbjct: 393 QVTIGHRTRAGGDGEGNGNIELQANSRIEQKVEVVDPRGKEFRLYELLKEAQKGSQKDDR 452 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +LV L K+ A + ++L G +V +H D+ +R + + G VLV ++ Sbjct: 453 ILVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAAR 512 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+PEV LV F + + IGR R GKAI + + + ++ Sbjct: 513 GLDIPEVKLVIN-----VTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVN 567 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVD 595 R +Q EE + KK D Sbjct: 568 IL--RAAKQPVPEELLKFGTTVKKKAHD 593 >UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Tax=Entamoeba RepID=B0ED30_ENTDI Length = 535 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 107/340 (31%), Gaps = 35/340 (10%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + E L L E + T+ T + G + Sbjct: 212 IIHILDTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTS-IKTVRCFGGVPQSCQM 270 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P L D++ + + + + + M Sbjct: 271 KDFQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMG-------------- 316 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------- 420 + + QT+ +AT + + G + + G D Sbjct: 317 ---FEVQVQDIIGQIRPDRQTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVK 373 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I+EV + D ++EI +R ++VL+ TKR A++L L + RV +H D Sbjct: 374 QIVEVCQERDR-DSKMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDK 432 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER + D + G + L+ +L GLD+ + +V + + I IG Sbjct: 433 AQAERDRALSDFKSGAVNYLIATDLASRGLDIRNIEIVINYEMP-----SDIENYIHRIG 487 Query: 541 RAARNVN---GKAILYGDKITPSMAKAIGETERRREKQQK 577 R R G+AI +AK + + ++ Sbjct: 488 RTGRMGRSVEGEAISLFTYADARLAKDLISVLKGAHQEVP 527 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 104/342 (30%), Gaps = 16/342 (4%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L A + + + T+ ++E G + + G Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGK-YLALRTAVVFGGINIEP 123 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L A ++V + + + L E L + Sbjct: 124 QIAALQAGVEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALL 183 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIR 440 + Q++ SAT + + + V ++ I + D + + Sbjct: 184 SPQRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLL 243 Query: 441 QRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ L+ TK A L + L H +H D + +R + + + + G+ Sbjct: 244 HLIRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQ 303 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ G+D+ ++S V + + + IGR R GKAI + Sbjct: 304 ILVATDVAARGIDIEKLSHVINYELP-----GNPEDYVHRIGRTGRAGSKGKAISLVSEH 358 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + I + + + ++ G + + + D Sbjct: 359 EKELLANIEKLLNAKLETEQ---IAGFDAEQFARSLPDRKNR 397 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 57/421 (13%), Positives = 114/421 (27%), Gaps = 63/421 (14%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 ++ L +L +++ P + A+ + L ++ Sbjct: 65 DLVANLVKLGFSQ--------------------PTPIQEKAIPLLLAGSDLIG------Q 98 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F + + ++ + + ELA + L + + + Sbjct: 99 AQTGTGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSGDDGRNVL--- 155 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G + R P L D + L + + + + M Sbjct: 156 ------VVYGGSSYQAQVGGLRRGARVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEM 209 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + QT+ SAT + + + + Sbjct: 210 LSMG-----------------FIDDIETILSQTPKDRQTMLFSATLSSRVMSIANRYLHS 252 Query: 411 QVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEY 465 I IE R D ++ I + E L+ T+ +L Sbjct: 253 PESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVESALIFARTRATVSELANE 312 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G L D+ R ++ + G+ VLV ++ GLD+ ++S V D Sbjct: 313 LISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAARGLDIDDISHVFNYDLP- 371 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR R G AI M + I + ++ + + I Sbjct: 372 ----EDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKKLIKGELPTVEQI 427 Query: 585 T 585 Sbjct: 428 E 428 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 58/387 (14%), Positives = 122/387 (31%), Gaps = 21/387 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ +++ + G +R ++ G D + +VV + Sbjct: 85 LVITPTRELATQVSDELFKYGRNIGARTVTV-YGGSSYNRQIDLIQRGASVVVATPGRLL 143 Query: 345 PQIGGMYRGDRAR-KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + D A L E L + + + QT+ SAT Sbjct: 144 DILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPIKLL 203 Query: 404 SGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + + ++ V + + D ++ + A ++ +V TK Sbjct: 204 AERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLM--DAEACQKSIVFCRTK 261 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L+ L G LH D++ +R +I+ + VLV ++ G+ + +S Sbjct: 262 SEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGIHVDNIS 321 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 V S + IGR R GKAI + + I Sbjct: 322 HVFNYHIPF-----DPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVGTTMTH 376 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 ++ + + +N K + NI + + ++ + + L ++ Sbjct: 377 AFVPSKNDL--RAINLKSIATSIEEHNIYDEAHQILDMLKEDIDEPTIMFKLVSMILDRQ 434 Query: 636 IHELEGLMMQHAQNLE--FEEAAQIRD 660 + + A+ L E A + RD Sbjct: 435 AIQGPNSIGIPAEKLAAILERADKRRD 461 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 113/347 (32%), Gaps = 13/347 (3%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + L + L++ EL R ++ GE F L Sbjct: 62 IEKIDYKLSKTQSLILCPTRELTLQVYEELKKLLRYYPQIR-IAVVFGGESYTKQFRALE 120 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + L++ I I + TL E L + QT Sbjct: 121 SKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEERQT 180 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--A 444 + SAT + + + + + IE + D + + Sbjct: 181 VLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLLDLK 240 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++ TK+ +++T +L++ G +H D+ +R ++ + R G+ +L+ + Sbjct: 241 RDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATD 300 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + G+D+ ++ +V D E + IGR R G A + S K Sbjct: 301 VAARGIDISDIKMVVNYDLPHED-----EVYVHRIGRTGRAGKKGLAYSFISPRKFSQLK 355 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + K + I Q L ++ + + ++ A Sbjct: 356 KLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANN 402 >UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791B2B Length = 645 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 52/384 (13%), Positives = 113/384 (29%), Gaps = 31/384 (8%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 S ++ +E L + + + + +++ + Sbjct: 241 STPTPVQNYAIPIIIEGRDLM-ASAQTGSGKTAAYVLPILHNLLKQPTQLIYDEHHCEPH 299 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE-NYSRFLSGRGPGEPPPTL 325 + +++ E + + G + + P L Sbjct: 300 VVIIAPTRELVSQISECVWKFSKGTDIRNGLLYGGTSVYHQKSKILQRGVHILTATPGRL 359 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + + M V +PS Sbjct: 360 IDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLTNSTMPS-------------IE 406 Query: 386 APQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 + QTI SAT + + + D + G + + + + LL Sbjct: 407 SRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKFKKKNALLD 466 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + + +V K++A+ YL E +H + ER + +RD + Sbjct: 467 -IIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRDFKTNRM 525 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV + GLD+ V+ V D ++ + IGR R GKAI + D Sbjct: 526 KILVATAVAARGLDIKGVNYVVNFDLP-----KTIDEYVHRIGRTGRLGNAGKAISFFDP 580 Query: 557 I-TPSMAKAIGETERRREKQQKYN 579 +A + + ++ +++ Sbjct: 581 ESDGPLAAELIKILKQADQEVPSF 604 >UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasidiella neoformans RepID=DBP3_CRYNE Length = 605 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 108/333 (32%), Gaps = 26/333 (7%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + T+ + +E G + + + G + D +VV Sbjct: 256 QMLVLAPTRELAQQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGR 315 Query: 343 TIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA---LAPQTIYVSATPGN 398 T+ G L E L + +N + QT+ SAT Sbjct: 316 TLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPE 375 Query: 399 YELEKSGGDVVDQVVRPTG--------LLDPIIEVRPV-ATQVDDLLSEIRQRAA----- 444 + + + + G ++ I+EV + L ++ Sbjct: 376 SVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFRLTHHLKAHLKVHPNS 435 Query: 445 --INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 R+LV L K+ A+ L + G V LH D+ R + + + G+ +VLV Sbjct: 436 KTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVA 495 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+P+V LV F + + GR R GKA+ + Sbjct: 496 TDVAARGLDIPDVGLVIN-----VTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEK 550 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + A R+ + +E P + KK Sbjct: 551 SLAGEFMRVLRDVGAEIPKEMDRFPTTIKKKEH 583 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 103/646 (15%), Positives = 208/646 (32%), Gaps = 79/646 (12%) Query: 22 RRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F Sbjct: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 Q + +T S ++ I RLS + + V++ Sbjct: 63 TD--------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIV 108 Query: 141 SVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+ + P +L L + G + + A+ +L Y DQ + G + RG + Sbjct: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D+FP S+ + R++ FD+E++ L +FD + + + + + P + T + I Sbjct: 169 LDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELF 227 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + ++ +R + + +++ +GIE + Sbjct: 228 RSQWRDTFEVKRDP-----------------EHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 LF Y PA+ LLV + AR E R + L+ Sbjct: 271 P----LFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRV 324 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 +E + V + + + ++ + ++ A Q L + Sbjct: 325 DELFSELKNWPRVQLKTEHLPTKAANANL---------GFQKLPDLAVQAQQKAPLDALR 375 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + V+ + ++ E L E L + + + +R + Sbjct: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM--------- 426 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 I G +L I ++D G R AR + T Sbjct: 427 ---IGAAEHGFVDTVRNLALICESDLLGE------------RVARRRQD------SRRTI 465 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + I Q + EHG+ + G+ + T A P+ Sbjct: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +H+L G A+ E+ + +L + Sbjct: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 49/398 (12%), Positives = 106/398 (26%), Gaps = 35/398 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + ++ A + Q + Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN------ 675 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +S + + + + ++ +H + + +G Sbjct: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 R + + ++ATP L + + D + T + Sbjct: 736 VRHKER--------IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 Query: 426 RPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDT 482 V ++ I + +V + E L E R H + Sbjct: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E ++ D F+VLV ++ G+D+P + + I AD G + L Q GR Sbjct: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRV 903 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + KA+ ++R + E+ G G D+ G Sbjct: 904 GRSHHQAYAWLLTPHP----KAMTTDAQKRLEAIASLEDLG---AGFALATHDLEIRGAG 956 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + + + L+ + L+ Sbjct: 957 ELLGEEQSGS-------METIGFSLYMELLENAVDALK 987 >UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=34 Tax=Dikarya RepID=PRP5_ASPTN Length = 1181 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 120/426 (28%), Gaps = 28/426 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLE 276 + ++RL +P + + I + + + + LE Sbjct: 562 DVIDRLGYENP---TSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLE 618 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 N + +T + ++ + N G P L +V Sbjct: 619 NMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRA--VCAYGGAPIKDQIAELKRGAEIV 676 Query: 337 VDESHVTIPQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 V I G + R L E + + +K QT+ Sbjct: 677 VCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLF 736 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQR--- 442 SAT + + V G + I+EVR + LL + Sbjct: 737 SATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGNLYSS 796 Query: 443 -AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + R L+ + A+ L L G +H D ++R I D + G F VL+ Sbjct: 797 DENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLI 856 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ ++ LV DA + GR R G A+ + + Sbjct: 857 ATSVAARGLDVKQLKLVVNYDAPNH-----LEDYVHRAGRTGRAGNTGTAVTFLTEDQER 911 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I + ++ ++ + + K A + + R Sbjct: 912 FSVDIAKALKQSGQKVPEPVQQMVDSFLEKVKAGKEKASASGFGGKGLERLDQERDAARM 971 Query: 621 DNVPMD 626 Sbjct: 972 RERRTY 977 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 100/316 (31%), Gaps = 38/316 (12%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + P L D+L + S++ + + Sbjct: 392 FRTACVYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADR--- 448 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQ 411 + + + K QT+ SAT + Sbjct: 449 --------------MMDMGFEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRV 494 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G D IEV LLS +++ ++ L+ TKR + L Sbjct: 495 VKLQVGKADLQANANVTQRIEVVSSNQLQHRLLSVLQEEVT-GQKTLIFCETKRQCDQLC 553 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L R +H D + ER I+ D R G+ ++L+ ++ GLD+ +V V D Sbjct: 554 RELRYRQLRALAIHGDKEQRERDRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDV 613 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYG-----DKITPSMAKAIGETERRREKQQK 577 ++ S I IGR R G AI + +MA+ I E R ++ Sbjct: 614 P-----KNIESYIHRIGRTGRAGNKGTAISFFQYDFYSPEKVTMARKICEVMRSVGQEPP 668 Query: 578 YNEEHGITPQGLNKKV 593 + E P+ +K Sbjct: 669 ADLEKIGAPRAPSKSR 684 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 60/355 (16%), Positives = 101/355 (28%), Gaps = 18/355 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + L+ L + L++ NE + Y+ + G Sbjct: 321 WPLLMHLMDQKELQPGDGPIGLILAPTRELSLQIYNEAKKFGKV--YNLNVVCCYGGGSK 378 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L +VV I + R L E + + Sbjct: 379 WEQSKALEQGAEIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICN 438 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-----TQVD 433 QT+ SAT + + D V G L+ I + + Sbjct: 439 HVRPDRQTLLFSATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWN 498 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + + + VL+ K AE + L LH D+D +R ++I + Sbjct: 499 WLLCHLVKFLSEG-SVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFK 557 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 E D+LV ++ GLD+P + V D R + IGR R G A Sbjct: 558 KKECDILVATDVAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAFT 612 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 A + ++Q + + G+ A T Sbjct: 613 LVTDKDKEFAGHLVRNLEGADQQVPEDLMELAMKSSWFRSSRFKQGKGRKPANTY 667 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 93/662 (14%), Positives = 199/662 (30%), Gaps = 104/662 (15%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + ++++++ L+ G Q + G++G+ +F +A + +++ P++ A Sbjct: 4 LLKLFCEAPSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L E+K + E + F + + + + RL + A+ Sbjct: 62 LTLAAELKLLWGEE--------------VFVFLPREIFGLGPSLPSAFVPRQRLLSLAAL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R+ VVV + + + GL P+ + L G + + +RL E Y R Sbjct: 108 ARRQGVVVATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVP 167 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG ++D FP S + +RVE +E+ R++ FDP + + + + V Sbjct: 168 GQFARRGGIVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAV-------KV 219 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 P + + + E++ E L + ++ L + + Sbjct: 220 EPAVEVPNPCTGREILPESWFLSQGEDSFPYPEVLLPCLFPRVVSLLAYLPPGAPLALVE 279 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + + E + + + + + L Sbjct: 280 AQAAEKAAREAEERQMEICRE-----MIAKKKLPEESRKAFLSWSEVAKEL--------- 325 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + L + T Sbjct: 326 -----------SLYPHRLRLSFLPEKNGEVLGLA---------VRTAP--------SFLG 357 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L EI++ + RV++ + + + E L+E+G R Sbjct: 358 KFAQLAEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGIIPRL------------TPD 404 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 +G V+ G LREG PE V + A+ GR + Sbjct: 405 SAPVGTVTVVKG-GNLREGFIFPEAQFVLLTPAEIF-------------GRRQATFSPTP 450 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 K Y ++ +G+ ++ I G++ A Sbjct: 451 TPVV--EEEREFKPGEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGEDRLYLPADQ 508 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 G + + + + ++ L G + + + A + +L +L + Sbjct: 509 LGV---------LERYVGGEGAKPRLSRLGGGEWKRVRARVKQAATDVARELLRLYAMRE 559 Query: 671 AA 672 A Sbjct: 560 TA 561 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 69/432 (15%), Positives = 125/432 (28%), Gaps = 39/432 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + Sbjct: 604 PMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTTILAQQHYRTFSSRFAPYPI-- 661 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +L + L A + +V +H + + Sbjct: 662 ----RVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDVQFRDLGLVIIDEE--- 714 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 + + + ++ATP L S + D T D + + Sbjct: 715 -----QRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPV 769 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 E V + IR+ A +V ++ +++ RV Y H + Sbjct: 770 ETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMP 829 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 I+ D ++DVLV ++ GLD+ V+ + + DAD+ G + L Q GR Sbjct: 830 EAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQ----LYQLRGR 885 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R A Y K I E + R + K G G D+ G Sbjct: 886 VGRTNR-LAYAYFL---YRRDKIINEAAKARLRAIKDFTSLG---AGFKVAKRDLEIRGA 938 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNLEFEEAAQI 658 + T+ G V +++ + LQ+ I EL+G + +E +A I Sbjct: 939 GNLLGTEQHG--------HIQAVGLELYCRLLQEAIKELKGEEVVPPVDPVIELTVSAYI 990 Query: 659 RDQLHQLRELFI 670 D + Sbjct: 991 PDDYVPFDQKLE 1002 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 113/367 (30%), Gaps = 18/367 (4%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE---EQRLTQRTQFD 293 P ++ E ++ + + A +L+ E + + + Sbjct: 24 KTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQLTNPEEAGPQGLILTPAREL 83 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTL-FDYLPADGLLVVDESHVTIPQI-GGMY 351 ++ + Y + + G+ L L +V I G Sbjct: 84 AVQVDN--DIRKMAKYLKHKTTAIYGQHNINLETQILNKGVSIVTGTPGRVFDHISHGTL 141 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R L E L ++ ++ + T+ SAT + + Sbjct: 142 STKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFSATMPPEIHNICKRYMNNP 201 Query: 412 VVRPTGLLDPIIE---VRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYL 466 V ++ ++ +++ + E ++ TK + + +L Sbjct: 202 VTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPESCMIFCNTKAAVDRVQSFL 261 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G R LH DI +R+ I+ + G+F +LV ++ G+ + ++SLV D Sbjct: 262 GKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIHIEDLSLVINYDVPN- 320 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + + IGR R + G+A I E +++ +E T Sbjct: 321 ----DKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEHIGTLILEEELPDEEAFT 376 Query: 586 PQGLNKK 592 Sbjct: 377 KAREEAA 383 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 113/365 (30%), Gaps = 19/365 (5%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE---EQRLTQRTQFDLE 295 P + ++ + + AA +LE + + + + T+ + Sbjct: 26 PTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPILEKVDIQDPSVQVLILTPTRELAQ 85 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGD 354 + E + L+ G+ L +VV I I D Sbjct: 86 QVAEALKDFTVRRRLYILTV-YGGQSIDRQIRSLERGVQIVVGTPGRVIDLIERKKLILD 144 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 R L E L + + + T SAT E + V Sbjct: 145 SLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACFSATMPREIRELVNQFLKSPVTI 204 Query: 415 PTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 ++ I + P L + E ++ TK+ A DLT L+ Sbjct: 205 SVERTQAAPTRIEQNIYMVPRGWSKRKALQPVL-EIEDPESAIIFVRTKQTASDLTTRLQ 263 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 E G V H ++ +R ++ R G ++V ++ GLD+ +S V D Sbjct: 264 EIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDIAARGLDVEGLSHVINYDLP--- 320 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + + I IGR R GKAI + M + I R++ K + Sbjct: 321 --DNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKLRQKIDICKIPNRSEVEA 378 Query: 587 QGLNK 591 + L K Sbjct: 379 KRLGK 383 >UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH3_9CHLO Length = 1063 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 111/383 (28%), Gaps = 29/383 (7%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR------- 285 + P + + + + + +L + K Sbjct: 413 RSGFDKPMPIQCQALPVIMSGRDCIGVAKTGSGKTLSYVLPMLRHVKDQRPIESGDGPIG 472 Query: 286 -LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + G +S G T L +V I Sbjct: 473 MIMGPTRELVTQIGKDCKKFGRAAGLVAVSV-YGGSGVATQIGELKRGCEIVACTPGRMI 531 Query: 345 PQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 G + R L E + + + QT+ SAT + Sbjct: 532 DVLTTGAGRITNLRRVTYMVLDEADRMFDMGFEPQITRIMNNLRPDRQTVMFSATFPHAM 591 Query: 401 LEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + V G ++ I+E+R + +L + + ++++ Sbjct: 592 EALARSALTNPVEIQVGGRSVVNSDIEQIVEMRAEEDRFLRVLELLGEWYERG-KIIIFV 650 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++ + + L G LH + +R I D + ++LV ++ GLD+ Sbjct: 651 ASQDKCDQVFRDLLRSGYPCLSLHGGKEQSDRECTIADFKSDVCNILVATSVAARGLDVS 710 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 + LV D + +GR R G A+ + + A + + Sbjct: 711 GLRLVVNYDTPNH-----LEDYVHRVGRTGRAGNKGTAVTFISQEEEKFAPDLVKAM--T 763 Query: 573 EKQQKYNEEHGITPQGLNKKVVD 595 + +Q + + KK + Sbjct: 764 DAKQPVPSDLRLMADEYAKKKKE 786 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 100/328 (30%), Gaps = 15/328 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + + T+ + + G + ++ G Sbjct: 75 LHRLAENRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGA-HLGFRVAVIFGGVKYGAQE 133 Query: 327 DYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L ++V + I L E L + Sbjct: 134 RALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPA 193 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q ++ SAT + +G + D V ++ V + LL+E+ Sbjct: 194 KRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEM 253 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R LV T TK A+ + YLE G +H + +R + + G+ V Sbjct: 254 FSD-PEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRV 312 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ VS V + + + IGR AR +G AI + Sbjct: 313 LVATDIAARGIDVDGVSHVVNFELPH-----VPEAYVHRIGRTARAGADGTAISFVAGDE 367 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITP 586 + K I + R++ + + Sbjct: 368 MKLLKDIEKVTRQKIPAIDRRNDKALGQ 395 >UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0C015_PARTE Length = 532 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 66/463 (14%), Positives = 136/463 (29%), Gaps = 41/463 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A + ++ +F + + + + H Q + Sbjct: 90 AYNRPTPIQASVFP-IIMSGHDLIGIAQTGSGKTIAYLLPGLVHIE------SQRKKGGP 142 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L ++ + + G + + P Sbjct: 143 MMLILVPTRELAMQIQEHISYFSEAYNMNSACI-YGGADKRPQEMALARDPDIVVATPGR 201 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D+L A + + +++ + + M L + + K + + Sbjct: 202 LIDFLDAQVTNLHNVTYLVLDEADRM-----------------LDMGFEQQVRKIDSYIR 244 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLDPII-------EVRPVATQVDDLL 436 QT++ SAT + + + G + I + + + L Sbjct: 245 EDRQTVFFSATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEEL 304 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 I + + ++VL+ TK+ EDL YL EHG LH D +R ++++ + + Sbjct: 305 LYILEELSNKDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASK 364 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 +L ++ GLD+ ++SLV D F + + IGR R G++I Sbjct: 365 CKLLCATDVASRGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGRAGDKGRSITMIT 419 Query: 556 KI--TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 P +AK + + + E+ + + K N Sbjct: 420 LDAMDPRVAKQLVDLLKDSEQVVNDDLYDFAYSKPYQKSKRPNQRKKPNDKPITQSKPVN 479 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 S + + KA + F +A Sbjct: 480 SNNLNTQKPQQKQFNLKASSPVKQSTSSMPPPPELKKAFSDAP 522 >UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa RepID=Q9GV12_HYDMA Length = 890 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 59/366 (16%), Positives = 116/366 (31%), Gaps = 29/366 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTP-RERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQR 289 F + T+ + + I ++ + LAA E +L E R Sbjct: 495 QTGSGKTASFLLPIITNLMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSY 554 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 ++ G + + P L D++ + + ++ + + Sbjct: 555 NSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADK 614 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + +P T+ SAT + + + Sbjct: 615 MIDMGFGPQIEHIIEFSGMPPKGI-------------RNTLMFSATFPDQIQHLAAQFLN 661 Query: 410 DQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 D + G + ++ T+ + L + Q + + + LV KR A+ L Sbjct: 662 DYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLENLLQTSGTD-QTLVFVEKKRDADFLA 720 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 +L + L +D +R +RD R G +LV + GLD+ +V V D Sbjct: 721 NFLSQKNFPPTILFADRTREKRESALRDFRNGIAPILVATAVAARGLDINDVKHVINYDL 780 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQKYNEE 581 + + IGR R GKA + D S+A+++ + E+ E Sbjct: 781 P-----KDANEYVHRIGRTGRIGNKGKATSFFDLDRDGSLARSLVKLLSDAEQDVPDWLE 835 Query: 582 HGITPQ 587 + Sbjct: 836 NCALGA 841 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 65/448 (14%), Positives = 119/448 (26%), Gaps = 42/448 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT- 290 F + +T R E + + L Sbjct: 46 QTGTGKTAAFLLPILHRLITNPARTRSPRT-------LILAPTRELAEQIFRSTLDFMRG 98 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G + + P L D+L + + + + M Sbjct: 99 TRLRATVIYGGVGMFPQVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHM 158 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + QT+ SAT + + D Sbjct: 159 FDM-----------------GFLPDIKRILAALPAKRQTLLFSATMPPAISGLAAETLTD 201 Query: 411 QVVRPTGLLDP--IIEVRPV---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 V G L P +E Q LL + A E V+V T TK A++L + Sbjct: 202 PVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEAGK-ESVIVFTRTKHRAKNLAQQ 260 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G + L ++ +R + R G F +LV ++ G+D+ +V+ V D Sbjct: 261 LCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATDIAARGIDVSQVAHVVNFDIP- 319 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + IGR R G+A + M +AI ++ + + E Sbjct: 320 ----DTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESHMKKPLPR-RNVEGFEP 374 Query: 585 TPQGLNK---KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK-ALQQKIHELE 640 P + Q + G G + + P+ + + Sbjct: 375 EPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYGDRPRGPRPEGARADSARD 434 Query: 641 GLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + A + R + Sbjct: 435 DRPRSDRPRSDRPAADRPRSDRPRTERQ 462 >UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=Alteromonadales RepID=A0KZD5_SHESA Length = 487 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 62/447 (13%), Positives = 112/447 (25%), Gaps = 49/447 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + N + + Sbjct: 67 QTGTGKTASFALPVLEQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKYSQFL------ 120 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P LFD + L + + + I + M Sbjct: 121 PLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRML 180 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R K + A QT+ SAT + + S + Sbjct: 181 DLGFVRDIE-----------------KVKRLIATEHQTMLFSATYSDAVKQLSHKMLNQP 223 Query: 412 VVRPTG--LLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLE 467 +E + + N +VLV TK AE L + L Sbjct: 224 EWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELT 283 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G H D R ++ D + G+ VLV ++ GLD+ + LV L+ Sbjct: 284 LDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINLELPFL- 342 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ----------- 575 + IGR R +G+AI + M I + Sbjct: 343 ----AEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGQTLPVTVQPGYEEGTP 398 Query: 576 -----QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ + T + K + A G TKA G + + + Sbjct: 399 LPARYREAPTDTTKTAKWNYKSSRNTGAKGAGGNGTKANGSKGNGARGKGGFGGNAGFGQ 458 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + + + + Sbjct: 459 SSESQARARKSPAREGKYAKNKPNTQK 485 >UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EA42_9CHLO Length = 754 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 107/379 (28%), Gaps = 24/379 (6%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 S + P Y+ + + + ++ EE + Sbjct: 368 TGSGKTCAFVVPMLAYIQELPPMTDEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNY 427 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 G + + P + D L ++ +++ + + M Sbjct: 428 RVASVVGGQSIEEQGFKLRRGCEIVIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDM 487 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFE-------ALAPQTIYVSATPGNYELEKSGG 406 + V S + + + T SAT + + Sbjct: 488 GFEPQVISVMDSMSAESLKPEEEAEKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARK 547 Query: 407 DVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + + V G + I++ + L E+ + + ++ TKR+ Sbjct: 548 YMRNPAVVTIGSAGKTSDLIKQIVQWTTSNQKPAQL--ELVLSQYPDTQAIIFVNTKRVV 605 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + ++ + G V +H +R E +R + GE+D+LV ++ G+D+ + LV Sbjct: 606 DHVSNLCFKMGYSVGAIHGGKSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVV 665 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + IGR R G A+ + + + E Sbjct: 666 NYEMPL-----VIENYTHRIGRTGRAGRQGTAVSFLTSEDTDVMYELKELL--TNSGNHV 718 Query: 579 NEEHGITPQGLNKKVVDIL 597 E K + D Sbjct: 719 PGELANHQAAKVKPMRDAK 737 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 80/472 (16%), Positives = 132/472 (27%), Gaps = 64/472 (13%) Query: 182 ARNDQAFQR---GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 R + R GTF RG P ++ L E++ TG T Sbjct: 38 DRRPLVWARTRHGTFDQRGAATSSDPMSFSELGL--------SEKVLSAVAATGYTTPTP 89 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL---LEEQRLTQRTQFDLE 295 + P + Q LLE + + + + T+ Sbjct: 90 IQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLLEQGRARARMPRTLILEPTRELAA 149 Query: 296 MMNE-----------------LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + E G G ++ P L D++ LL+ Sbjct: 150 QVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLLRGVDVLIATPGRLLDHVERGRLLLSG 209 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I + M + + QT++ SAT Sbjct: 210 IEVLVIDEADRMLDM-----------------GFIPDIERICKLVPFTRQTLFFSATMPP 252 Query: 399 YELEKSGGDVVDQVVRPTGLL---DPIIEVRPV-----ATQVDDLLSEIRQRAAINERVL 450 + + V + I V + + L E+ + A + + Sbjct: 253 EIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRELIRNADQLQNGI 312 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V KR + L++HG V LH D+D R + + R GE +LV ++ GL Sbjct: 313 VFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLVASDVAARGL 372 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+P VS V D + IGR R G AI+ AI + Sbjct: 373 DIPAVSHVFNYDVPHH-----SEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAIEKLI 427 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 Q G P + + + K G+ R + + Sbjct: 428 GNAIPWQGEP--LGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAE 477 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 110/387 (28%), Gaps = 38/387 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H +T + + L L L++ T Sbjct: 49 QTGTGKTAAFALPLLHHLMTVGG---KPTTRTTKALILSPTRELAVQIAESIADLSEGT- 104 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D + + + + H+ + + M Sbjct: 105 PISHCVVFGGVSVRPQIQALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRML 164 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 +K Q++ SAT + S + + Sbjct: 165 DM-----------------GFVRDVMKIVGKCPDDRQSMMFSATMPKPIEDLSKKILTNP 207 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + P + L+ + R++V T TK A LT Sbjct: 208 QKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFV--SKNDTGRIVVFTRTKHGANRLTS 265 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L++ G + +H + R + + + GE DVLV +++ G+ + ++S V D Sbjct: 266 DLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLVATDIVARGIHVDDISHVVNFDLP 325 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 S + IGR AR G+AI D + K I + ++ Sbjct: 326 -----EEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQIIKLTGIDLT--PQATDYT 378 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKG 610 + D G + + Sbjct: 379 VNVLAGELDADDGKRRGPRNQQPRNGR 405 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 44/359 (12%), Positives = 99/359 (27%), Gaps = 30/359 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I ++ + + L L E + Sbjct: 72 QTGTGKTAAFAIPLLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQ-ESFTAYGKFL 130 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + + P L D + + + + D + + + M Sbjct: 131 DLKSLVIFGGVSQHPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRML 190 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 + Q+++ SAT + + + Sbjct: 191 DMGFVH-----------------DVQRVIVKLPEQRQSLFFSATMPPEIQTLAKAILRNN 233 Query: 411 QVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEY 465 + I +D + + + +LV T TK A+ + + Sbjct: 234 PAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLHILKDKAIKTLLVFTRTKHGADRVVKD 293 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + +H + R + + + + VLV ++ G+D+ E++ V + Sbjct: 294 LHKAEITAEAIHGNKSQNARQRALNNFKSQQTRVLVATDIAARGIDIDELTHVVNYELPN 353 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + IGR R +G AI + + + K I + R + + H Sbjct: 354 -----VPETYVHRIGRTGRAGADGIAISFCEPEEKAFLKDILKLISREIPVETEHPFHN 407 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 61/400 (15%), Positives = 114/400 (28%), Gaps = 21/400 (5%) Query: 217 FDEEVERLSLFDPLTGQIV---STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 FD+++ + T +P + A + + Sbjct: 308 FDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQR 367 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + L + L++ NE + Y+ + G L Sbjct: 368 ELKAGEGPIGLILAPTRELSLQIYNEAKRFGKV--YNLRVVCCYGGGSKWEQSKALEQGA 425 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I + R L E + + + QT+ Sbjct: 426 EIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQTLLF 485 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDD-LLSEIRQRAA 444 SAT + + D + G L+ + V P Q + LL + + A Sbjct: 486 SATFKRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLCHLVKFLA 545 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 L+ K AE + L LH D+D +R ++I + E D+L+ + Sbjct: 546 EG-SCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDILIATD 604 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+P + V D R + IGR R G A + A Sbjct: 605 VAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFAG 659 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + ++ + + G+ + Sbjct: 660 HLVRNLEGADQPVPSDLLELAMKSSWFRSSRFKQGKGKKV 699 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 55/376 (14%), Positives = 99/376 (26%), Gaps = 43/376 (11%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ T +A + L L + + Sbjct: 56 QTGTGKTASFTLPMITML-----ARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVK 110 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + + P L D+ L++ D + + + M Sbjct: 111 LTKALLI-GGVSFKEQEQAIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRML 169 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT++ SAT + + + Sbjct: 170 DMG-----------------FIPDIERIFGLVPFTRQTLFFSATMAPEIERITNTFLSNP 212 Query: 412 VVRPTGLLDPI---IEVRPVATQ-----------VDDLLSEIRQRAAINERVLVTTLTKR 457 IE R + + D L + I ++ K Sbjct: 213 EKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRAAITAEGDAFRNAIIFCNRKV 272 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + + + L++H +H D+D RM + R G +LV ++ GLD+P VS Sbjct: 273 DVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVASDVAARGLDIPNVSH 332 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + IGR R G AI AI ++ + Sbjct: 333 VINYDVPSH-----AEDYVHRIGRTGRAGKTGVAITLCVPSDEKYLGAIEGLIKQPIPRA 387 Query: 577 KYNEEHGITPQGLNKK 592 + + G K Sbjct: 388 EAPMDAGTPKAETEDK 403 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 105/345 (30%), Gaps = 17/345 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + R +N K + + + Sbjct: 65 IQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRVGKPRKNRKKPRGLVVVPTRELAV 124 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 ++ +L +G + G + L ++V + + Sbjct: 125 QVTEDLVTAAGK--LGSRILTVYGGRAYEPQVEALKQGVDVIVGTPGRLLDLVKQKHLDL 182 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + L E L + + QT+ SAT + S + Sbjct: 183 GQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTMLFSATLPGEIVALSRRYLTRPTH 242 Query: 414 RPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEY 465 D P D + + + + R ++ TKR + + E Sbjct: 243 VRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQCDGRGLTMIFCETKRACDMVVEQ 302 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L+E G +H D+ +R + +R R G+ DVLV ++ G+D+ +V+ V D Sbjct: 303 LKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVAARGIDVDDVTHVVNYDCP- 361 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 + E++ + IGR R G A+ + + + K I Sbjct: 362 ----QDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKVINNAL 402 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 59/401 (14%), Positives = 118/401 (29%), Gaps = 22/401 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+ + + + T+ + E + + G+ Sbjct: 57 TGKTAAFALPMLSRLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQ 116 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L + ++V + I D R L E L Sbjct: 117 GYGLQLSQLKRNPQVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWI 176 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT------QVD 433 + Q SAT + +VD V ++ Sbjct: 177 FDQAPAERQVALFSATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKL 236 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D+L+ I + + +L+ TK +L + L+ HG L+ D++ R + L+ Sbjct: 237 DVLTRIMELEPFDG-LLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLK 295 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ DVLV ++ GLD+ +S V D + + IGR R G+AIL Sbjct: 296 QGQLDVLVATDVAARGLDVERISHVVNYDIPT-----DPSAYVHRIGRTGRAGRAGRAIL 350 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + K+I RR + ++ +++ + + + Sbjct: 351 LVEPRERGLLKSIERVIRRPIPSMEPPSAAALSESRIDRFI--------GEIRKAQSEQD 402 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + + L + N++ + Sbjct: 403 LDFFYRLLARISQEQEIEMLDIAAALAYLNQRERPLNVKED 443 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 108/352 (30%), Gaps = 15/352 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ + + + T+ + + G+ Sbjct: 53 TGKTGAFGLPLIDSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQ 112 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV + I D R L E L Sbjct: 113 PMGVQIRALRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWI 172 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQV 432 E QT SAT + + + G +D + + Sbjct: 173 LEQTPAERQTTLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKT 232 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L I A ++ +V TK ++ E L G + L+ D++ ER ++ DL Sbjct: 233 EALGRMIEVEAGLD-AAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADL 291 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R G DV+V ++ G+D+P ++ V DA + IGR R G+AI Sbjct: 292 RDGRLDVIVATDVAARGIDVPRITHVFNYDAP-----GDAEVYVHRIGRTGRAGRKGRAI 346 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 L+ + M + I + ++QK + + + + + A Sbjct: 347 LFLEPRKRRMLRDIERLTGKPVREQKVPDRAAVIARREERLAERLQAELAGE 398 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 215 bits (546), Expect = 5e-54, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 115/381 (30%), Gaps = 16/381 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L ++ + + + T+ + + + G Sbjct: 62 LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRF-SHFMDTNIVSVVGGVSYKLQN 120 Query: 327 DYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L ++ +V + + + E L K E + Sbjct: 121 KLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQ 180 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 Q + +AT + + + D + I Q +L + Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A +N + ++ T TKR A+ L++ L R + LH D+ ER I + E Sbjct: 241 VLNEADLN-QAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 +LV ++ G+D+ +++ V D R I IGR R GKAI Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLP-----RQVEDYIHRIGRTGRAERKGKAISLVIDK 354 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 M + I + + + K KK ++ K + S Sbjct: 355 EKFMLQKIEKYANIKIEVIKSTHSTSDLSLVYKKKESGFKKKRRSSGSRKKNDKFTSSSK 414 Query: 618 VEPDNVPMDMSPKALQQKIHE 638 + D+ K+ ++ + + Sbjct: 415 RKKHGFKADVKAKSRRRPVKK 435 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 215 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 57/422 (13%), Positives = 116/422 (27%), Gaps = 34/422 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE-NNKLLEEQRLTQRT 290 F + V R A E + +++E R Sbjct: 82 QTGTGKTAAFALPILDRLVRHPHRPEPKSVR-----ALVLSPTRELSGQIVENFEKFGRH 136 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G G + + P L D + + + + + + M Sbjct: 137 ANISVSLAIGGVPMGRQIRALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQM 196 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 +++ SAT + E +G + D Sbjct: 197 LDMGFVHAIR-----------------AIVRRLPHKRHSLFFSATMPHAIAELAGSMLRD 239 Query: 411 QVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEY 465 V + +E R + + + + +R LV + TK A+ + Sbjct: 240 PVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVLSTEDIDRALVFSRTKHGADKVVRV 299 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + G +H + +R ++ R G+ L+ ++ G+D+ VS V D Sbjct: 300 LAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIATDIAARGIDVTGVSHVINFDLPN 359 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 S + IGR AR G AI + D + ++I + + + Sbjct: 360 -----VPESYVHRIGRTARAGREGIAISFCDHEERAFLRSIEKLIKMQLPSSDRRGAGTR 414 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + ++ + G+ P + + S + + EG Sbjct: 415 FAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPRHGDERSGEGRSRAPRSEEGRPQ 474 Query: 645 QH 646 Sbjct: 475 AA 476 >UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E7_PLAF7 Length = 742 Score = 215 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 105/315 (33%), Gaps = 38/315 (12%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++L+E + ++ + G + + P L D+L + ++ Sbjct: 441 LQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLDFLENGNINLL 500 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +V I + + + + K Q ++++AT Sbjct: 501 KCIYVVIDEADRLLDM-----------------GFEKQLRKIMTQVNKNKQLLFLTATWP 543 Query: 398 NYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + D V G ++ + + LL +++ N + Sbjct: 544 EQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENN-K 602 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +L+ TKR ++L + L H +H D ER I+ + + ++LV ++ Sbjct: 603 ILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASR 662 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP-----SMA 562 GLD+ +S+V D + I IGR R GK+IL+ A Sbjct: 663 GLDIKNISVVINYDIPN-----TIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFA 717 Query: 563 KAIGETERRREKQQK 577 K + + + + Sbjct: 718 KELIKLLNKTNQTVP 732 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 215 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 110/383 (28%), Gaps = 39/383 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + +D +++ + L F + T R + + Sbjct: 17 VAAGYTDPTPIQLRAIPVVLGGGDLI-GSAQTGTGKTAAFALPILTRLGAHAARAPRVL- 74 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ R R + G G++ Sbjct: 75 -------VLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRGVDVIVAT 127 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L DYL + + + + ++ M + Sbjct: 128 PGRLMDYLHDRTINLQGVEILVLDEVDRMLDM-----------------GFLPVVKDIIQ 170 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVA---TQVDDL 435 QT++ SAT + + + G ++ ++ Q +L Sbjct: 171 RCPRQRQTLFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFEL 230 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + R + VLV + TK A+ + L+ V LH++ +R+E + + G Sbjct: 231 LEALLARTDFD-SVLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSG 289 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 +++++V ++ G+D+ VS V D + IGR R G A Sbjct: 290 KYEIMVATDIAARGIDVAGVSHVINYDVP-----EKPEDYVHRIGRTGRAQAVGDAFTLV 344 Query: 555 DKITPSMAKAIGETERRREKQQK 577 + I ++ + + Sbjct: 345 TPENAHDVRDIERFIGQKIPELR 367 >UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE69 Length = 610 Score = 215 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 107/341 (31%), Gaps = 37/341 (10%) Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCSGIENYSR 311 + +E +A E + + + R + G ++ Sbjct: 262 HIQHQPKLERGDGPIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYGQDRHL 321 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D+L + + +++ + + M+ Sbjct: 322 RNGTEICVATPGRLLDFLNSGTTNLERCTYLVLDEADRMFD-----------------MG 364 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPII 423 + + + Q + SAT + + D + G ++ I+ Sbjct: 365 FEPQIRSIIDQIRPDRQVLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIV 424 Query: 424 EVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 V L + +++ +E + L+ T TK+ ++ + +L++ G R LH Sbjct: 425 HVCQSERDKKKLQNVLKEIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQ 484 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 R I+R G +LV ++ GLD+ ++ V D + I IGR Sbjct: 485 KNRDFILR----GRIKILVATDVAARGLDVSDIRYVINYDYPN-----NMEDYIHRIGRT 535 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 R N G + + S A + R + + E+ Sbjct: 536 GRHNATGTSYTFLTDEDASKAGDLISVLREANQNVDPDLEN 576 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 94/626 (15%), Positives = 198/626 (31%), Gaps = 78/626 (12%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + VT + +++ L R +V++ N T A L+ E F Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFI-------------SA 105 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 Y+P + + +++ R+ A +L ++ SV+ P Sbjct: 106 SDLVYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++ Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF EE+E + FDP T + + + R + P Y+ Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSD---------------------- 262 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E K + + + + E GY E + + Y +L Sbjct: 263 EQKKEYQNILKYYSSSLHIPEIPEAGYGIYYEELVPLVRENHG------ILSYFSEPPIL 316 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + +I + R L + D EEF L+ Sbjct: 317 LFPSPNSVNQRILHLEREYL--SLFEKRSQEVLCAPPDKLLSFGEEFRVLSELVGLSFVG 374 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 G D+V + I EVR +++ ++++T+ Sbjct: 375 LPPRN----GSDLVSCLKEAPAFKGKIREVREKISELRA---------EGGWKIVLTSSF 421 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L E+ G + ++ I L + D + ++ LR G Sbjct: 422 EAQTKRLQGLFEKEGIVL------LNEGATEPIPFHLGKHKSDAFLVLSELRNGFIFENQ 475 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 ++ + + D G ++ R + + + D I R K Sbjct: 476 KILILSENDIFGREYKRKT------RFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKI 529 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQ 633 ++ N G + + + G + + + P + + Sbjct: 530 ERTNA------GGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGTESPRLDSLGKNTWK 583 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIR 659 + ++ + A++L + +++ Sbjct: 584 KTKDRVQKAVETLAEDLVQMYSNRLK 609 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 65/440 (14%), Positives = 122/440 (27%), Gaps = 42/440 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P V + I+ Q Sbjct: 645 KKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYNTFKNR 704 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 NY + + + + L L +D T + + Sbjct: 705 FR---------NYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNL 755 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + E + + + ++ATP L + + + + T Sbjct: 756 GLLIIDEE-----QRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIAT 810 Query: 417 GLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 + +E + D + IR + +V E T+YL E V Sbjct: 811 PPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSI 870 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH + E E + D ++D+LV ++ G+DMP V+ + + AD G + Sbjct: 871 GILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ--- 927 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + + P + E+R +Y E G + Sbjct: 928 -LYQIRGRVGRSDRK---AFAYLLLPKDRVVTEQAEKRLNTIYEYQEL----GSGFKVAM 979 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-- 651 D+ G K + V D+ + L++ I ++G + Sbjct: 980 RDLEIRGAGNLLGKEQSGD-------IMEVGFDLYVRMLEEAIARIKGEEVVVEVRTSVT 1032 Query: 652 -----FEEAAQIRDQLHQLR 666 F I D ++ Sbjct: 1033 LNTNFFIPETYISDTRQKIE 1052 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 100/682 (14%), Positives = 206/682 (30%), Gaps = 103/682 (15%) Query: 16 DQPEAIRRLEEGLEDGLAHQ--------TLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + L E +L G+ G + +++ +++ N+ Sbjct: 3 NNESIYSELIERFSKSEEFLNFDIKTVKSLTGLKGGSDSLFFSSLFNK-NESILIIKENE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 + A L + + P Y P DT S I Q R++ Sbjct: 62 SDAMLLSQSLNFY---------------NIPNYYFPDYDTVPFTKMSPVSDIAQDRINIL 106 Query: 128 KAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ + +++ +V+A+ D K+ +HL VG +D + L +L Y + Sbjct: 107 YKLINKEKCIIITTVNAVTRKLPNRDDLKKLPIHLNVGDKLDLDNLRLTLYDLGYVIERE 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 ++GT VRG ++D+F E + +R+ELFD+E+E + LF+ G+ ++ IYP Sbjct: 167 VAEKGTASVRGSIVDVFSVEY-NNPIRIELFDDEIESIRLFNIEDGRSFKSVENIIIYPV 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + + + E + + + Y +G Sbjct: 226 RETIYSDSAVSEFINNNEIE------------------------DELKDNIIKRKYFAGS 261 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLL------VVDESHVTIPQIGGMY-RGDRARKE 359 EN T+FDY + + ++ I I + D Sbjct: 262 ENLLPIFYKDL-----ETIFDYFDYGYIFTDDALKLKNKFITIIDTIKENFNDIDNIFNI 316 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 Y + S +K + I + + Sbjct: 317 IEDIYKLYIDSNYFAEIVKKAINISPFITDIDIYKFHFEEGISFKSRLTDFLDYVKEYRE 376 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + + L + ++T ED+ + +E + +++D Sbjct: 377 KDYLIILSTGHNDQAL--RFYKIMQDLSPTIITENDIEDTEDIKD--KEENSDNKEINND 432 Query: 480 IDTVE----------------RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 I + + EI +D E + + G ++ + I D Sbjct: 433 IKENDDNNEDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFIKDDIKTIFIADW 492 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + G R + I + + D A + + + Sbjct: 493 EVFGRKRKKVRKIPKV------NKNLIETFVDLNVGDYAVHVNYGIGKYLGLTRKMS--- 543 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 G K + + AKG P+ + + V +S K+ +L G Sbjct: 544 ---NGKEKDYITLE---------YAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSA 591 Query: 644 MQHAQNLEFEEAAQIRDQLHQL 665 ++ E+A +L +L Sbjct: 592 WDKIKSKAREDALATARELIKL 613 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 59/441 (13%), Positives = 135/441 (30%), Gaps = 42/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + V + + A Q + Sbjct: 655 KEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKR 714 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + IE +RF++ + + L ++ +H+ + + Sbjct: 715 FED--FPIKIEVLNRFVTSKQA----KRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLI 768 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + L + +SATP L + + D + T Sbjct: 769 VIDEEQRFGVK--------HKEALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIET 820 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR- 474 L+ I V D +++ I + +V E +++ + R Sbjct: 821 PPLNRIPVKTFVTEFSEDAVVNAIERELKREGQVFYLYNRIDTIESFALMIKKLCPKARI 880 Query: 475 -YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + +I+ D ++D+LV ++ G+D+P + + I +A+K G Sbjct: 881 CVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGIDIPNANTILIDNANKLGLSE--- 937 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A+ E +R + + + G G + Sbjct: 938 -LYQLRGRVGRSDREAYAYMFYPSDL----ALTEVAYKRLEAISEHTDLG---AGFKIAM 989 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA------ 647 D+ G K + + V ++ + L++ +E +G + + Sbjct: 990 RDLEIRGAGNILGKEQSGMIYQ-------VGYELYTQMLEEAANEYKGEIKEVTFDTVID 1042 Query: 648 -QNLEFEEAAQIRDQLHQLRE 667 ++ F + I D ++ Sbjct: 1043 LKHNLFIPDSYIADSKEKISA 1063 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 53/370 (14%), Positives = 114/370 (30%), Gaps = 30/370 (8%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + E ++ LT + +++ +E+ G + F++ G+P L Sbjct: 62 IENVREGAGHVQAIVLTPTRELAMQVADEIISFRG--SRKVFVATVYGGQPMLPQLKALK 119 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + I + L E + E +T Sbjct: 120 RGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRT 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN 446 + SAT + + + D V P+ E+ D + + Sbjct: 180 LLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDAQ 239 Query: 447 ERVL--VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 V T+ A+ + L E G +H D+ R +I+ R +LV + Sbjct: 240 PEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + G+D+P++S V + +S + +GR R G A+ + Sbjct: 300 VAARGIDVPDLSHVVN-----FALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLR 354 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + + R ++ + ++ K++ Sbjct: 355 YITKITKLRVDKKPLPTIDQVI----------------DVKKSRMGAELSEIVEAGKHLS 398 Query: 624 PMDMSPKALQ 633 +D++ + L+ Sbjct: 399 YLDLAHELLE 408 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 59/437 (13%), Positives = 134/437 (30%), Gaps = 21/437 (4%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E F T IP + + + + ++ + EN + Sbjct: 14 ERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQKIQEKIEENGR 73 Query: 280 ----LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 ++ LT + L++ +E+ + L G+ + L + Sbjct: 74 KNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLR--LCTVYGGQSIEKQINKLRNGVDI 131 Query: 336 VVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ I + + + L E L + + + + SA Sbjct: 132 VIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKEDCRKLLFSA 191 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAI--NERV 449 T +E + + + E + D +R+ Sbjct: 192 TLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRRIIDKEPGFYG 251 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV TK + L L + LH D++ +R + + + D+++ ++ G Sbjct: 252 LVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDIMIATDVAARG 311 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 +D+ E++ V D ++ + + IGR R G AI + + K I + Sbjct: 312 IDINELTHVINYDIP-----QNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRFKYIMKI 366 Query: 569 ER---RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + ++EK E +T + K+ ++ + + + + + + Sbjct: 367 SKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDSEDLENYEFENLEIVDELIEL 426 Query: 626 DMSPKALQQKIHELEGL 642 S + + I +L Sbjct: 427 ADSKVIIDKLISQLFKE 443 >UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=39 Tax=Leotiomyceta RepID=PRP28_ASPNC Length = 810 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 107/365 (29%), Gaps = 24/365 (6%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + + + A E + +E + Sbjct: 421 GKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFN 480 Query: 296 MMN-ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 +++ G+ + YS P L D + L++ +V + + M Sbjct: 481 VVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLG 540 Query: 355 RARKETLVEYGFRLPSALDN---------RPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + + + + QT+ +AT + Sbjct: 541 FEEPVNKILDALPVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIAR 600 Query: 406 GDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + G ++ +E+ + L +I ++V KR Sbjct: 601 KYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRN 660 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + + +++ G LH +R + +R G DVLV +L G+D+P+VSLV Sbjct: 661 CDAIAREIKQWGFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLV 720 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 S S IGR R +G AI + + + + + + Sbjct: 721 VN-----FNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKS-PISR 774 Query: 578 YNEEH 582 EE Sbjct: 775 VPEEL 779 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 54/338 (15%), Positives = 99/338 (29%), Gaps = 15/338 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+ + + T+ + E + G+ Sbjct: 92 TGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQ 151 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKF 379 L ++V + I D L E L + Sbjct: 152 SMVVQLRQLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWI 211 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQV 432 + QT SAT + + + + VA ++ Sbjct: 212 LQHTPAERQTALFSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKL 271 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L + I + + ++ TK +L + LE G L+ D+ R +I L Sbjct: 272 DAL-TRILEVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQL 330 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G+ D++V ++ GLD+ +S V D + + IGR R G AI Sbjct: 331 KGGQLDIVVATDVAARGLDVSRISHVINYDIP-----YDTEAYVHRIGRTGRAGRTGSAI 385 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 L+ M K I R+ + + + + + Sbjct: 386 LFVAPREMRMLKVIERATRQPIEALQLPSREAVADKRV 423 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 57/377 (15%), Positives = 118/377 (31%), Gaps = 33/377 (8%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L L++ + + G I+ S + + P + D L Sbjct: 82 PTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSLKRNPQIVVGTPGRILDLLN 141 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 L + + + + + M R + QTI Sbjct: 142 KKYLNLSEITSFVLDEADEMLRMG-----------------FIEDVENIFLKSSKQHQTI 184 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + + +++ LL + Sbjct: 185 LFSATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFL--EV 242 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 I + V++ TK ++++ LE++G L+ D++ + R + + + G D+LV Sbjct: 243 EIFDAVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVAT 302 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ +SLV D S I IGR R GKA+++ + + Sbjct: 303 DVAARGLDVDRISLVINYDIPL-----DVESYIHRIGRTGRAGRTGKALMFVENRERKIL 357 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPD 621 I + + Q K + + LN I ++ K + Sbjct: 358 YNIERNIKEKLSQIKLPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGIS 417 Query: 622 NVPMDMSPKALQQKIHE 638 +V + + + ++ Sbjct: 418 DVKIISAALLKVAQKNK 434 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 214 bits (544), Expect = 9e-54, Method: Composition-based stats. Identities = 57/453 (12%), Positives = 124/453 (27%), Gaps = 45/453 (9%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 ++ P + + +E + F + Sbjct: 51 QAARAIGWTELMPVQRRTLPYLLE--------GRDVIVQSQTGSGKTGAFLLPLFERLDP 102 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 R ++ + ELA + E K Q ++ G G + + Sbjct: 103 SRGQVQALILTPTRELARQISEAFEQMKTG-----VSGAQSLRAVLVYGGVRYGPQLKAL 157 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 + P + D + L + + + M ++ Sbjct: 158 EQGAQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKR------- 210 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIE 424 + T SAT + + D ++ Sbjct: 211 ----------YLPRERNTAMFSATMPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYF 260 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + P + L+ I E ++ TKR E L ++L+ +G + D+ + Sbjct: 261 IVPPMEKDRALVQLI--ELENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQ 318 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R I+ LR G+ +LV ++ G+D+ ++S V + D + + GR R Sbjct: 319 RERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVP-----QDPEYYVHRSGRTGR 373 Query: 545 -NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G I+ + + +AI ++ + + + V + + Sbjct: 374 VGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPTPETVAERVAERAVALLEDRYRET 433 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + P+VE L + Sbjct: 434 TSLDRERIARFVPLVEQLAQEEPELLAMLVDAL 466 >UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=Atopobium RepID=C8W8S2_ATOPD Length = 450 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 52/355 (14%), Positives = 97/355 (27%), Gaps = 22/355 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK-------LLEEQ 284 F + + + + + A R V N K Sbjct: 48 QTGTGKTAAFMLPTLQRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRA 107 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ ++ + + + G L ++V I Sbjct: 108 LIVTPTRELAAQIDNVAKSVCASTGQQAV-IVTGGAHYKHQIAALQKGCDVLVATPGRLI 166 Query: 345 PQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + L E L + E A QT+ SAT Sbjct: 167 DLLDKKHTSLEDIQVLVLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITST 226 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAI-NERVLVTTLTK 456 + D Q LL + ERVLV TK Sbjct: 227 IDALLKDPERIEIARTGQTAATIEQHLCSVTQGQKPQLLKALIDSFDPAPERVLVFCRTK 286 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + + L+ G +V +H+D R + + R +LV +++ G+D+ + Sbjct: 287 SRVDSIYKNLKAAGLKVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGID 346 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 +V D + IGR R G+A + + + I + Sbjct: 347 VVINFDVPL-----DPEDYVHRIGRTGRAGATGQAYTFMGPDEVTPLREIEYFTK 396 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 101/322 (31%), Gaps = 30/322 (9%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ RL R + G + + + P L D + + Sbjct: 89 ALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKMLRRNPDILVATPGRLIDLFDQGFIGL 148 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + M + + E + QT+ SAT Sbjct: 149 DQIQTFVLDEADRMLDMG-----------------FIDDIRRIESLQPRDHQTLLFSATL 191 Query: 397 GNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQ--VDDLLSEIRQRAAINERVL 450 + + + V + D I + Q +LL + + I +R L Sbjct: 192 SPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKENDI-KRAL 250 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T TK+ A + E L G +HS R + G+ +VLV ++ G+ Sbjct: 251 VFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVATDIAARGI 310 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ +S V + + + IGR AR +G A+ + D M K I + Sbjct: 311 DVDGISHVINYELP-----DDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEKLT 365 Query: 570 RRREKQQKYNEEHGITPQGLNK 591 + N H I ++K Sbjct: 366 KSSIAICDNNPFHSIAVASMHK 387 >UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 Tax=cellular organisms RepID=H669_METJA Length = 367 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 112/315 (35%), Gaps = 12/315 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A L+ N +E LT + +++ +E+ G N + ++ G+ Sbjct: 61 FAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKG--NKNLKIAKIYGGKAIYPQI 118 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L + VV + I + L E L K Sbjct: 119 KALKNANI-VVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + + SAT L + + D ++ IE V ++ + + Sbjct: 178 DKRILLFSATMPREILNLAKKYMGDYSFIK-AKINANIEQSYVEVNENERFEALCRLLKN 236 Query: 446 NERV-LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E LV TKR ++L L + G + +H D+ +R ++IR + + +L+ + Sbjct: 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 ++ G+D+ +++ V ++ S + IGR R GKAI ++ + Sbjct: 297 VMSRGIDVNDLNCVINYHLP-----QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLR 351 Query: 564 AIGETERRREKQQKY 578 I + + K+ K+ Sbjct: 352 YIERAMKLKIKKLKF 366 >UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LK58_CORK4 Length = 558 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 107/376 (28%), Gaps = 18/376 (4%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + L + DL + E+ S ++ G P L Sbjct: 163 LDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGHPFEKQIAQLR 222 Query: 331 ADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V + L E L K + QT Sbjct: 223 EGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKILQQVPEKRQT 282 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDL--LSEIRQ 441 I SAT + + + V +V +++ L LS I Q Sbjct: 283 ILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLNKLATLSAILQ 342 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 R ++ T TKR A D+ + L + G V +H D+ R + + R + ++LV Sbjct: 343 AHNRG-RTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAFRSKKIEILV 401 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +V+ V + + IGR R + G A+ + Sbjct: 402 ATDVAARGIDVDDVTHVINYQVP-----DDAMTYVHRIGRTGRAGHTGTAVTLVGWDEVT 456 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA--KTKAKGRGKSRPIV 618 K I + + + D+ AK R Sbjct: 457 KWKVIDDELDLNIGELDEWFSTSPELREALDIPDDVNERVGESRPVYGGAKALSPQRKSA 516 Query: 619 EPDNVPMDMSPKALQQ 634 + + P + + Sbjct: 517 KRASRPRRDNRRQGDP 532 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 56/426 (13%), Positives = 107/426 (25%), Gaps = 36/426 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ E + L F + A Sbjct: 24 YTEPTPIQREAIAPVLAGRDLM-AAAQTGTGKTAGFALPLLQRLAATHPHPHPAGRPRGL 82 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L ++ E ++ G + + P L Sbjct: 83 VL---TPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIEALTQRVDILIATPGRL 139 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + M R K + Sbjct: 140 IDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVR-----------------KVLKLLPA 182 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q + SAT + + + D + + E + +LL+ + Sbjct: 183 ERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHL 242 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++VLV T TK A L E L + G +H + R + + + G V Sbjct: 243 V-ESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRV 301 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+D+ E+ V + + IGR R + G+A+ Sbjct: 302 LVATDIAARGIDISELPQVVNYELPN-----VPEDYVHRIGRTGRAGSPGEAVSLVCVDE 356 Query: 559 PSMAKAIGETERRREKQQKYNEEHG--ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + I R Q P R K +P Sbjct: 357 LKLLADIEAFIGRPIPQFTEPGFEADLSVPPQPLLPPRHQQGRQDGEGGEPRGQRNKKKP 416 Query: 617 IVEPDN 622 +P Sbjct: 417 HNKPAR 422 Score = 42.1 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 89/299 (29%), Gaps = 57/299 (19%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT-------MVLA 64 +P+ Q EAI + G + A QT G T + + A P +VL Sbjct: 26 EPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQRLAATHPHPHPAGRPRGLVLT 85 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 P + LAAQ+ + +P + I V IE Sbjct: 86 PTRELAAQVGESIATLGTH------------------LPLTSLVIFGGVRVKPQIEA--- 124 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 L +R +++A+ + L + + + V D R+ ++ + R+ Sbjct: 125 ------LTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEAD------RMLDMGFIRD 172 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 VR V+ + PAE ++ D+ F + Sbjct: 173 ----------VRK-VLKLLPAERQNLLFSATFNDDIKALADTFLHDPQLVE------VSP 215 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + K EL + ++L R E++ + G Sbjct: 216 PNSTTELVTHHVHLVDRNRKRELLTHLVESRQWQQVLVFTRTKHGANRLAEVLAKGGIP 274 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 86/679 (12%), Positives = 187/679 (27%), Gaps = 91/679 (13%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPN 66 S + A++ L LE+G +L G++ S + F A + L P ++++ + Sbjct: 3 TSKLFAKISETPAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDS 61 Query: 67 KTLAAQLYGEMKEFF-------PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ + + P+ + + + + Sbjct: 62 LKTQESFQQDVETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV 121 Query: 120 EQMRLSATKAMLERRDVV------VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAI 172 RL A+ + ++A+V+A+ + + L G ++ + Sbjct: 122 ISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDL 181 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L E Y Q Q+G +RG ++D++P + +R+E F +E+E L FDP+T Sbjct: 182 IEWLEEQGYEPEAQVTQKGEIALRGGILDVYPM-TSPWPVRLEFFGDELESLRYFDPITQ 240 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 I T+ P + ++ + + L L E +R+ + T+ Sbjct: 241 ISREQIATVTLPPGGEFGILKQLAARDQQASLATLLDYL-PTGTLFILSEPERIEEHTEQ 299 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + P L + V + GM Sbjct: 300 YSTQVPNEDPF------------HIPWSDFQELLS--EKGMKSLQLSEIVMDGESEGMDV 345 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + E F +L Sbjct: 346 LSESEAVAEDER------PFGESTENSLPFSSLEAFRPLG-------------------- 379 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 E + Q + +++ + + V + + E +++G Sbjct: 380 -------ARAPEPQIAEAQRREFFAQLHRWSRQGYDVHLFCNNDGERQRFQEVWKDYGF- 431 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 D G L L G E +V + DA+ G + + Sbjct: 432 ----------------GEDF--GLKMHL---GALGRGFLNEEAKVVVVTDAEIFGRYKVQ 470 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 R A + I + + + R + + G N Sbjct: 471 RPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQHGIGRYQGLKVLPVTLGRKGVDPNAT 530 Query: 593 VVDILAL----GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 D + + P+ E V + + +++ + G A+ Sbjct: 531 PADSGQECLVIEYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKARPQLNTIGGTRWAKAK 590 Query: 649 NLEFEEAAQIRDQLHQLRE 667 + +L ++ Sbjct: 591 AQAERAVRDVASELLAIQA 609 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 69/410 (16%), Positives = 127/410 (30%), Gaps = 35/410 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + Q E + + Y Sbjct: 657 PMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTFKERVAD--YPM 714 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF S + + LPA + +V +H I + + Sbjct: 715 RVELLSRFRSP----KNRKRVISELPAGAVDIVIGTHRLIQSDINFKDLGLVIIDEEQRF 770 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L + D T D + Sbjct: 771 GVLHKEKF--------KQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQDRLPV 822 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA + L+ I++ +V + + + L R + H + Sbjct: 823 ETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMK 882 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ GE DVL+ ++ GLD+P + + I AD+ G L Q GR Sbjct: 883 PDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLS----DLYQLRGR 938 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + P A + + R+R K G G + D+ G Sbjct: 939 VGRYKHQ---AYAYLLLPRHAGLLAD-ARKRISALKQYSTLG---SGFKIAMRDLEIRGA 991 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + V D+ + L+Q + L+G ++ ++ Sbjct: 992 GNMLGPEQSG-------QITAVGFDLYCQLLKQSVAALKGEKVKPRVEVQ 1034 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 120/401 (29%), Gaps = 16/401 (3%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A ++ ++ + + T+ + + + G+ Sbjct: 58 AFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQ 117 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + I R L E L + Sbjct: 118 LRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELP 177 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLS 437 QT SAT + + D +D + + LL Sbjct: 178 ENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLR 237 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++ TK D+TE LE++G R L+ D+ R + + LR G Sbjct: 238 FL--EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSL 295 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D++V ++ G+D+ +SLV D S + IGR R G+A+L+ + Sbjct: 296 DIVVATDVAARGIDIERISLVVNYDIPL-----DAESYVHRIGRTGRAGRSGRALLFVEP 350 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + I ++ + + + K V I ++ + + + Sbjct: 351 RERRLLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLF 410 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + D + + L Q +L + E + Sbjct: 411 TADQDQENIAAAMLMLLQGKQKLILPPDPPMEKRRRERNDR 451 >UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Nasonia vitripennis RepID=UPI00015B57D6 Length = 715 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 111/383 (28%), Gaps = 35/383 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + +A E +E++ Sbjct: 319 QTGTGKTLAFLLPALIHIDNQDTPRSERSGPTVLVMA----PTRELALQIEKEVNKYYYH 374 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D + + L V S++ + + M Sbjct: 375 GIKAVCVYGGGDRKKQMNIVSKGVEIVIATPGRLNDLIQTEVLDVKCVSYLVLDEADRML 434 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + R QT+ SAT + + Sbjct: 435 DMGFEPQIRKSLLDIRPD-----------------RQTVMTSATWPPGVRRLAESYMKSP 477 Query: 412 VVRPTGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + G LD + D+L + A +++V+V K +D+ Sbjct: 478 ITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLKDFFHNMAPSDKVIVFFGKKCKVDDIGS 537 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G + +H + +R + + D++ G+ ++L+ ++ G+D+ +++ V D Sbjct: 538 DLALSGVACQSIHGGREQADREQALEDIKTGDVNILLATDVASRGIDIEDITHVFNYD-- 595 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 F R + +GR R G++I + + K + + E++ Sbjct: 596 ---FPRDIEEYVHRVGRTGRAGKTGESISLVTRRDWGLTKELIKILEEAEQEIPTELYSM 652 Query: 584 ITPQGLNKKVVDILALGQNIAKT 606 KK D G + Sbjct: 653 SERYEAMKKKRD-EERGDGDRRE 674 >UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Trypanosomatidae RepID=DDX17_TRYBB Length = 568 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 57/367 (15%), Positives = 103/367 (28%), Gaps = 30/367 (8%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + + + + E + +EE+ G G + Sbjct: 161 LAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVYCGCVYGGAPKGPQLGL 220 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D+L + + +++ + + M + Sbjct: 221 LRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVR---------- 270 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----IEVR 426 K QT+ SAT + + G + + R Sbjct: 271 -------KICGQIRPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQR 323 Query: 427 PVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + TQ E+R+ + ERVLV KR A++L L G +H D + + Sbjct: 324 FILTQEFAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQ 383 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R I+ R LV ++ GLD+ ++ V D + IGR R Sbjct: 384 REFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPM-----QIDDYVHRIGRTGR 438 Query: 545 -NVNGKAILYGDKITPSMA-KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 G+ + K + + E E+ Q+ + I + G N Sbjct: 439 AGGEGRCVYLITKKEAQITPSVLKELIGILERAQQEIPDWMIEWNAQQPRYQVKRNRGMN 498 Query: 603 IAKTKAK 609 Sbjct: 499 GFGRHQS 505 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 48/353 (13%), Positives = 99/353 (28%), Gaps = 12/353 (3%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A ++ + + T+ + E G+ Sbjct: 51 AFALPAIERVDTKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQ 110 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 F L A +V+ + + + D+ L E L + + Sbjct: 111 FRALAAGAQVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVP 170 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQ 441 Q+++ SAT + + + P ++ L + + Sbjct: 171 EQRQSLFFSATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTR 230 Query: 442 RAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +N ++ TK M ++L E L G LH DI +R + + F+ Sbjct: 231 LIDLNDFRYGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEF 290 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ GLD+ ++ +V D IGR R GKA + Sbjct: 291 LIATDVAARGLDVDDLEVVFNFDLPN-----DAEDYTHRIGRTGRAGRKGKAFTFVSGRE 345 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 +++ R ++++ + N + A Sbjct: 346 LWKLQSMVRFARLDIRRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRF 398 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 108/415 (26%), Gaps = 31/415 (7%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE-EQRLT 287 L G+ V + + P + + L E +E R Sbjct: 37 VLAGRDVIAAAKTGTGKTAAFSLPTMDRLGHARHGQGPLLLIVTPTRELALQIESVCRTI 96 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + G + S P L D + D + + + + Sbjct: 97 AKRSGHRVTCVVGGVSYNPQIDSLRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEA 156 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + QT+ SAT + + Sbjct: 157 DRMLDMGFLP-----------------DMRRIVAACPTQRQTLLFSATIDSAIEDNMAHL 199 Query: 408 VVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + V + +DLL + R++V T+ + Sbjct: 200 LNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNERG-GTRIIVFARTRHRVDT 258 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L + G V +HSD +R I L G+ D+LV ++L G+D+P V+ V L Sbjct: 259 CVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVATDVLARGIDIPNVNYVVNL 318 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + IGR R G AI + ++ + I + + + Sbjct: 319 DMP-----DQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDIQKLIGKDIPEMSVES 373 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + A KSR + Q+ Sbjct: 374 FDSSASDNALAAKATRANAQNDPELATAAREDKSRKKAKSSRSSRREHNTEDQRA 428 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 55/350 (15%), Positives = 100/350 (28%), Gaps = 13/350 (3%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + + + T+ Sbjct: 27 IQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSKGPRVRQNQVRALVLTPTRELA 86 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMYRG 353 +N GI N + G L ++V + R Sbjct: 87 AQVNGSVVKYGI-NLPLTSTVVFGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRF 145 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 D+ L E L K F Q + SAT + + G V + V Sbjct: 146 DQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDDIRSLAKGLVNNPVE 205 Query: 414 RPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEE 468 + P +E + + N +VLV + TK A L +LEE Sbjct: 206 ISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEE 265 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 +H + R + + + + G+ VLV ++ G+D+P++ V D Sbjct: 266 QDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFDLPN--- 322 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R GKAI I ++ ++++ Sbjct: 323 --VSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLIQQVLERRE 370 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 112/399 (28%), Gaps = 40/399 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG--QIVSTIPRFTIYPKTHY 249 F VR E++D ++ V L D + F I Sbjct: 72 DFGVRQEIVDALTDVGITHPFPIQAMTLPV-ALQAHDIIGQAKTGTGKTLGFGIPLLNRV 130 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ--RTQFDLEMMNELGYCSGIE 307 V P E + + A E + T + G + Sbjct: 131 VAPGEPGWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQ 190 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 P + D L L ++ + + + M Sbjct: 191 IEQLQRGAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLG------------- 237 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----------PTG 417 K T+ SAT + + + Sbjct: 238 ----FLPDVEKILSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVK 293 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + ++ +++ L + +A R +V TKR A +++ L + G +H Sbjct: 294 NIKQVVYRAHALDKIEVLARLL--QAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIH 351 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 D+ R + +R LR G+ DVLV ++ G+D+ +V+ V ER+ + Sbjct: 352 GDLGQGAREQALRALRHGKIDVLVATDVAARGIDVDDVTHVVNYQCP-----EDERTYLH 406 Query: 538 TIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQ 575 +GR R G A+ + D I + + Sbjct: 407 RVGRTGRAGNKGTAVTFVDWDDMPRWSLIDKALETGHPE 445 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 63/422 (14%), Positives = 115/422 (27%), Gaps = 19/422 (4%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE--RIVQAMEEIKEELAARRKVL 274 FD+ +L D +TG +T ++ R+ + Q Sbjct: 22 FDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAA 81 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 ++ + + T+ +++ + G L Sbjct: 82 VDPQLAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERGAQ 141 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV I + D R L E L Q S Sbjct: 142 VVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVALFS 201 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + + + + + P + + L + + Sbjct: 202 ATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVL--ATSDA 259 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +V T+ AE++ L G + D+ ER I+ LR G DVLV ++ Sbjct: 260 DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ + LV D +E + + IGR R G A+ + + I Sbjct: 320 ARGLDVERIGLVVNFDVPRE-----VETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTI 374 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 R + + + A A + E P+ Sbjct: 375 ERVTGSRLVEATIPTNAEVAAHRTGAALATAHARL-GAGDVSAHRERLVAHVAELGVDPL 433 Query: 626 DM 627 D+ Sbjct: 434 DV 435 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 60/400 (15%), Positives = 121/400 (30%), Gaps = 28/400 (7%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L E ++ LT + L++ NE+ G N L G L Sbjct: 62 IERLDEKANDVQALVLTPTRELALQVCNEIDSLKG--NKRLNLLPVYGGVSIGNQIRALK 119 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 LVV I + + + + E L Q Sbjct: 120 RRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQI 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVV----------RPTGLLDPIIEVRPVATQVDDLLSEI 439 + SAT + + + + I + + +++ LLS + Sbjct: 180 LMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIE-LLSRL 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 N LV T TK +E++ L + G L+ D+ +R I+ + + Sbjct: 239 ID-IDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKI 297 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ G+D+ + V ++ + I IGR AR G AI + Sbjct: 298 LISTDVAARGIDIDNLKYVINY-----SLPQNPENYIHRIGRTARAGNEGTAITFVTPTE 352 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-------IAKTKAKGR 611 I + + ++ K + I + K +I + I Sbjct: 353 YRRFMFIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEE 412 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 P ++ L+++ + + +++ + Sbjct: 413 TDQEPSQIIASILKYFYGGILKEENYNKIKEVKNSSKSKD 452 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 55/418 (13%), Positives = 112/418 (26%), Gaps = 63/418 (15%) Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 +L+ L + Y P ++ I E+ + Sbjct: 13 LLQGLEQAGYETPT------------------PIQAQSIP--------EILDGNDVLGAA 46 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE-------NNKLLEEQ 284 F + + + + R L + ++ Sbjct: 47 QTGTGKTAAFALPILQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANF 106 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 R+ + + G + P L D + + + D + + Sbjct: 107 RIYGKKTRLRSTVIFGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVL 166 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + M + +F Q + SAT + + Sbjct: 167 DEADHMLD-----------------MGFLPDVKRILKFLPRDRQNLLFSATMPGPIRKLA 209 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERVLVTTLTKRM 458 +VD V P +E + LL+ + A LV T TK Sbjct: 210 DEILVDPVTIQIAPQKPTVERIEQSICFVAQADKPRLLNHFIETKATG-STLVFTRTKHG 268 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ + L + G + +H + R+ + + E DVLV ++ G+D+ + V Sbjct: 269 ADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDVLVATDVAARGIDIDGIQTV 328 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 D + + + IGR R G+ +++ AI + + Sbjct: 329 INYDTPN-----TPEAYVHRIGRTGRAGREGETVMFCGGHETKFFIAIEREIKLQIPV 381 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 48/330 (14%), Positives = 85/330 (25%), Gaps = 18/330 (5%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + ++ L + L++ + L GE Sbjct: 276 SFTLPMMDILSDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALL--IGGES 333 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFE 380 D L +++ I R + E L + Sbjct: 334 MNDQRDVLSKGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIV 393 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-------RPVATQVD 433 QT++ SAT + + + + + Sbjct: 394 SLLPHNRQTLFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRK 453 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L +RQ N L+ KR + LT+ L +HG LH D+ R + + Sbjct: 454 ALRHLLRQEKVQN--ALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFK 511 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G +LV ++ G+D+ +S V D + IGR R G A Sbjct: 512 AGSLQLLVCSDVAARGIDIGGLSHVFNFDVPIH-----AEDYVHRIGRTGRAGREGAAFT 566 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH 582 AI + + + Sbjct: 567 LASPDDKFAVDAIEKLINAPIPRIEIEGLE 596 >UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCT2_ELUMP Length = 502 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 70/457 (15%), Positives = 130/457 (28%), Gaps = 55/457 (12%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P ++ I L +E F I H V + Sbjct: 29 PVQAQTIPLAIE--------GHDVLASAQTGSGKTCAFGIPVIEHLVQNKS--------- 71 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L LT+ G ++ + R P Sbjct: 72 NNALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALKKRPRCIIGTPG 131 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + L + ++ M + Sbjct: 132 RLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIE-----------------SIMAKL 174 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLL 436 + Q + SAT ++ + +V + + I + + L+ Sbjct: 175 PVKRQMMMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFETLV 234 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S +R A L+ T+ E L ++L + + +H +R I+D R + Sbjct: 235 SLLR---AKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEK 291 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 FD+LV ++ GLD+P + LV D I IGR AR G AI + Sbjct: 292 FDILVATDVAARGLDIPHIQLVINYDLPL-----RAEDYIHRIGRTARAGAKGLAISFVT 346 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + I + + ++ Q+ K+ ++ + K K + Sbjct: 347 PNDKHLWNDIQKFLKGQDVVQRPIGRAHKE----QKQNFASKKRENKKSQNQKKDFKKKK 402 Query: 616 PIVEPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLE 651 EP P+ + K + +I ++E + + Sbjct: 403 VNAEPKKEPLTFAEKRREARIKTKIENKNQKITSKEK 439 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 106/658 (16%), Positives = 204/658 (31%), Gaps = 63/658 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGL--AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 P Q R L + + + G S + +A +IA++ P +++ Sbjct: 6 IIPLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLD 65 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ + E+ P++ P S+T + V+ + +R+ Sbjct: 66 SAEEVTAGLAEYLPDDR------------DPTLWPVSETLPYELLPVDRSVSALRVELLA 113 Query: 129 AMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + R V +VA A+ L P HL VG + A + L + Y Sbjct: 114 RLARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVV 173 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 174 QAPGQVGRRGGIIDVFPPVGD-HALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPL 232 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + R +V E + L+ + G+E Sbjct: 233 EVSLAQRDAALSALRQMDTTTLRPEVAEEWERS-------------LQRLERGQVTVGLE 279 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + L +L DYL L+V ++ +E Sbjct: 280 LLAPLLLPEPA-----SLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAGE 334 Query: 368 LPSALDNRPLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LPS + L ++ + I P ++ + + P E+ Sbjct: 335 LPSGMPRPYLDWQAVADRLSGARQIAFGPVPTHWSPPVA--------IIPDARPVYGREL 386 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 A ++D L++++R+R A V++ + + LTE LEEH R Sbjct: 387 PAYAGRLDALVADVRERLADGWAVILAS---EQSGRLTEVLEEHDIFPRT--RKRPAGNG 441 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 V V + L G + + ++ + D + G+ R Sbjct: 442 RIAPPPEPPTPGTVEVVYSRLNGGWEHGGIKVLLLTDREMFGYRRVA------------A 489 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + +Y + G+ ++ + + + Sbjct: 490 PAPRRRAARRPPLLPSLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAANDRLY 549 Query: 606 TKAKGRGKSRPI--VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + P + + + + + + A L AA+ + Sbjct: 550 LPVDQIDRITPYEGAGIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATE 607 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 60/417 (14%), Positives = 118/417 (28%), Gaps = 40/417 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + Sbjct: 649 PMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRI 708 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R + + L + V+ +H + + + + + Sbjct: 709 EMLSRLRSR------KEQTQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRF 762 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + ++ATP L + + D V T + Sbjct: 763 GVAHKEHFKRL--------RTNVDVLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPI 814 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V D L+ I + + +V + + E LE+ R H +D Sbjct: 815 RTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVLERLEKLVPEARFGVGHGQMD 874 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ EFDVLV ++ G+D+P V+ + I A + G + L Q GR Sbjct: 875 EDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQ----LYQLRGR 930 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + +A Y + R + + E G G + D+ G Sbjct: 931 VGRSHH-RAYAYVL---YDANVPLSAEAVARLEAIQEATELG---AGFQIALRDLEIRGA 983 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----LMMQHAQNLEFE 653 + V +D+ + L + E++ +L E Sbjct: 984 GNVLGPEQSG-------HVAAVGLDLYTRMLATAVEEIKQGRPIEEPEAVTVDLPIE 1033 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 60/361 (16%), Positives = 110/361 (30%), Gaps = 15/361 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+ + + + T+ + + G + G+ Sbjct: 57 TGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQ 116 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L ++V I + + D L E L + + Sbjct: 117 EYREQLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRV 176 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLL 436 Q ++ SAT + +VD + IE R V + L Sbjct: 177 VSDTPKDAQRVFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKL 236 Query: 437 SEI--RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + +V T+ L E L G L D+D R + L+ Sbjct: 237 EALSRLLEVEPVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKR 296 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ DVL+ ++ GLD+P ++ V D + + IGR R G AI + Sbjct: 297 GKVDVLIATDVAARGLDVPRITHVFNYDLP-----QDAEAYTHRIGRTGRAGRTGVAITF 351 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQG---LNKKVVDILALGQNIAKTKAKG 610 + + ++ ++ + +E I K+V+D LA G + + G Sbjct: 352 AGGREQRRVRDMERVTGQQMQEVELPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDG 411 Query: 611 R 611 Sbjct: 412 L 412 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 62/375 (16%), Positives = 111/375 (29%), Gaps = 15/375 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + + + T+ + E + + R L G+ Sbjct: 51 TGKTAAFGLPLVDRSDPQDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVL-PIYGGQ 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L A +VV + + R L E L Sbjct: 110 PIDRQMRRLRAGAQIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTI 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLL 436 + Q ++ SAT + + + + + P I R + Sbjct: 170 LDAAPPERQLVFFSATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRA 229 Query: 437 SEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + L+ T TK+ A++L E L++ G R LH D++ R ++ R Sbjct: 230 QALTRVLAAEDPASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRR 289 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + +V+V ++ GLD+ ++S V D ++G S I IGR R G AI + Sbjct: 290 QQLNVVVATDVAARGLDIADLSHVINYDMPQDG-----ESYIHRIGRTGRAGRTGVAISF 344 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I K I + + V + Q Sbjct: 345 ALPTDRYRLRLIERATGSTLVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDP--SLVL 402 Query: 614 SRPIVEPDNVPMDMS 628 R +V D+ Sbjct: 403 YREVVGQLREEFDLG 417 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 60/394 (15%), Positives = 125/394 (31%), Gaps = 40/394 (10%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + NK ++ +T + L++ EL G + ++ G+ F L + Sbjct: 84 KANKFVKAIIVTPTRELALQIFEELKSLKGTKR--VKITTLYGGQSLEKQFKDLEKGVDI 141 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV I + L E L + L+ + +T SA Sbjct: 142 VVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSA 201 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLSEIRQRA--AINERV 449 T ++ + + + + T + E D L + + + Sbjct: 202 TMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPDFYG 261 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V TK +++++ L + G LH D +R ++ R + +LV ++ G Sbjct: 262 IVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARG 321 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 +D+ ++ V R + IGR R G AI + + + Sbjct: 322 IDIDGLTHVINYSVP-----RDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRF 376 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 + + + + I + L K + + V ++ Sbjct: 377 AKAKIIKDSIPQVEDILNRQLEKLLDTLK---------------------NAPKVSNELY 415 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 +A QQ I E+ + +E I+D++ Sbjct: 416 KRAAQQIIEEMG-----PTEAVEMLLHTLIKDKI 444 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 112/401 (27%), Gaps = 34/401 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + L R + + E + T Sbjct: 46 QTGTGKTAAFALPILQRLLDSGKFRSPKTCRALILLPTRELAIQVEDCFREYAQFTA--- 102 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G + P L D + + + + + M Sbjct: 103 -ISTACIFGGVNDNPQKQKLIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRML 161 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 + K Q ++ SAT + + + + Sbjct: 162 DM-----------------GFIHDIRKVVAMLPQDRQNLFFSATMPEEISKLAATILRPN 204 Query: 411 QVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V IE R + LL E+ ++VLV TK A+ + Sbjct: 205 PVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELLAEHPEMKKVLVFCRTKHGADKIVR 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 LE+ G + +H + R E + + + + VLV ++ G+D+ +VS V D Sbjct: 265 VLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLVATDIAARGIDVDDVSHVFNYDLP 324 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 E + + IGR AR G AI + S + I + R + + + Sbjct: 325 NE-----HETFVHRIGRTARAGKEGVAISFCSPDEESDLRGIEKLTRVKIPEGDQSIYEN 379 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + P + +++ +A+ R + Sbjct: 380 LPPPQKETAESMMRNSRGRMSREEAQARAAETRNNRGNRKG 420 >UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LZN9_9ALVE Length = 580 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 69/470 (14%), Positives = 126/470 (26%), Gaps = 69/470 (14%) Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQR--GTFR--VRGEVIDIFPAESDDIALRV 214 L G+ D + + + Y + R G R I + A V Sbjct: 123 LSWDAGIDWDYEKLAQFNKDF-YVPHPTVEGRSEGEVDDIRRANRIQLIEAHGMKCPKPV 181 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK-------THYVTPRERIVQAMEEIKEEL 267 F+E L L + P V E Sbjct: 182 TTFEESNFPDYLISTLNQRFPGGHPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYLMPA 241 Query: 268 AARR--KVLLENNKLLEEQRLTQRTQFDLEMMNE----------------LGYCSGIENY 309 + +E L + +++ E G + Sbjct: 242 IVHIAAQPEVEQGDGPVALVLVPTRELSQQLLAESMLQIGSVPLRIACVYGGQPKRQQER 301 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + P L D+L + +++ I + M R+ Sbjct: 302 ELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEMLALGFGRQLD--------- 352 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD-----PII 423 QT+ SAT + + + V G + Sbjct: 353 --------SICSAIRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAACHQVT 404 Query: 424 EVRPVATQ--------VDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERV 473 + +D+++ ++ N + L+ TKR + LT+ L G Sbjct: 405 QDFVFLEHPGMKQKEFMDNVIPKVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNA 464 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +HSD + ER + R G+ +LV NL+ G+D+ + V D ++ Sbjct: 465 VCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMP-----QNVE 519 Query: 534 SLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + IGR AR +G +I AK + + + Sbjct: 520 EYVHRIGRTARAGAHGTSITLFTAQEGRHAKDLVDILNEAGQNIPEFLLM 569 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 96/357 (26%), Gaps = 27/357 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I T + + M L L + LT+ T Sbjct: 186 QTGTGKTAAFLISIITQLLQTPPPKERYM-GEPRALIIAPTRELVVQIAKDAAALTKYTG 244 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ P L D+ + + + + + M Sbjct: 245 LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 304 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT+ SAT + + + VD Sbjct: 305 DMGFIPQVRQIIRQTPHKG---------------ERQTLLFSATFTDDVMNLAKQWTVDP 349 Query: 412 VVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 + + +E A D + A N ERV+V K + E L Sbjct: 350 AIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERL 409 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G + D+ +R+ + R G+ VLV ++ G+ + +S V Sbjct: 410 TKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN-----F 464 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + IGR R +G +I + + I E R+ + E Sbjct: 465 TLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKITCEMPPAEL 521 >UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JG19_9ALTE Length = 463 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 49/397 (12%), Positives = 106/397 (26%), Gaps = 34/397 (8%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P +++ + + + + F I + + Sbjct: 67 PIQAETLPWTLACQ-DLIG-------QAQTGTGKTAAFLITAIQTMLETPIEDSKRFASE 118 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 LA L + ++L T + + + + + P Sbjct: 119 PRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRDQLQNEVVDILVATPG 178 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D+L + + + + + + M + Sbjct: 179 RLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTPKE------------- 225 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIR 440 QT+ SAT L + +E D+ L + Sbjct: 226 --DRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLV 283 Query: 441 QRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E + LV + DL E L G V + +I +R++ + + G Sbjct: 284 NYLKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQ 343 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ G+ + V+ V + + + IGR R + G +I + + Sbjct: 344 VLVATDVAGRGIHVNGVTHVFNYNLP-----DNAEDYVHRIGRTGRAGSTGVSISFAGED 398 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 AI + ++ + +E + Sbjct: 399 DSFALPAIEKYIGQKLANEVPDEALMVPMDNAPIARK 435 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 62/386 (16%), Positives = 118/386 (30%), Gaps = 15/386 (3%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 M E L + T+ + +++ I+N + Sbjct: 80 FMLPSLELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAY-IKNLPLRHTVLFG 138 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPL 377 G L A +VV + + ++ L E L + Sbjct: 139 GVNMDKQTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIR 198 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVAT---Q 431 K + QT+ SAT + + + + + +E +A + Sbjct: 199 KIMQMLPKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALK 258 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL + +N +V+V TK+ + +T L + +H D R+E + Sbjct: 259 KRSLLERLIVDLHMN-QVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNA 317 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 + G VLV ++ GLD+ E+ V + + IGR R +G A Sbjct: 318 FKEGTLRVLVATDVAARGLDIAELPFVINYELPT-----QPEDYVHRIGRTGRAGADGVA 372 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I DK M +AI E ++ N+ + + N ++++ Sbjct: 373 ISLMDKTEQKMFEAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDD 432 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKI 636 R K + + + I Sbjct: 433 RNKRNEYANKSDKNSKKAEEKNDPGI 458 >UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyostelium discoideum RepID=DDX46_DICDI Length = 1151 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 119/426 (27%), Gaps = 28/426 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLENNKLL 281 L F + I + + + + + Sbjct: 524 LKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGM 583 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 ++ + L++ E S + + G L +VV Sbjct: 584 IALIMSPTRELALQIHVECKKFSKV--LGLRTACVYGGASISEQIAELKRGADIVVCTPG 641 Query: 342 VTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + + R L E + + QTI SAT Sbjct: 642 RMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFP 701 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + G ++ +EVRP T+ L+ + ++L Sbjct: 702 PKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKG-QIL 760 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T + ++L L + LH D +R E I D + +L+ L GL Sbjct: 761 IFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGL 820 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ +++LV D + +GR R G A + + +I + Sbjct: 821 DIKDLNLVVNFDCP-----DHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKAL 875 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + K +E KK + G+++ G+ + ++ Sbjct: 876 EQSGS--KVPDELRKLNDTYEKKRKE----GKDVLLAPTGFTGRGHKFDAAEEDKKNIER 929 Query: 630 KALQQK 635 K ++ Sbjct: 930 KQQRKA 935 >UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K6A2_SCHJY Length = 672 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 101/344 (29%), Gaps = 20/344 (5%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F I TH M + L +E + ++ Sbjct: 305 GKTAAFVIPLVTHISRLPALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLG-LRC 363 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G+ +++ P L D L ++ V + + M Sbjct: 364 VAVVGGHAFEEQSFQMSQGAHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGF 423 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEE------FEALAPQTIYVSATPGNYELEKSGGDVV 409 D+ + E A QT+ SAT + + Sbjct: 424 EEDVNKALTSLPPSGHDDDEAMVAGEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLN 483 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 ++ G ++ +E+ + L EI ++V KR E L Sbjct: 484 KPIMLTIGTIGQAVDRVEQRVEMIADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESL 543 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L G RV LH +R I LR D+LV +L G+D+P VSLV + Sbjct: 544 AKALYNMGWRVVTLHGSKSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYN 603 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 +S IGR R +G AI + + + Sbjct: 604 M-----AKSIEDYTHRIGRTGRAGKHGTAITFLGPEDTGVYYDL 642 >UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=Bacteria RepID=C7PCT4_CHIPD Length = 444 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 58/463 (12%), Positives = 128/463 (27%), Gaps = 59/463 (12%) Query: 165 MIIDQRA-ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 D +L + + Y ++ + P + Sbjct: 4 DEFDLDDRVLDGIDAMGYTTATPVQEK-----------VIPP---------------IIA 37 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 F + +T + + R++ ++ + LE Sbjct: 38 GKDILACAQTGTGKTAAFLLPILHRLITEPHDARKI---NSLIIVPTRELAVQIAQTLEG 94 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 G E + P + +L + + ++ Sbjct: 95 MSYFTSVSSIAVYGGSNGALFAAEKKALTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLV 154 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + M + ++ Q + SAT + + Sbjct: 155 LDEADRMLD-----------------MGFSDDIIRITSTLPKERQNLLFSATMPDKIRKL 197 Query: 404 SGGDVVDQVVRPTG---LLDPIIE--VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + I++ Q L+ ++ R +++ K+ Sbjct: 198 ALKILHQPEEINIAISKPPEKIVQEAFVVFEEQKTGLIKQLLARKEFG-CIIIFCSRKQN 256 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + LT L++ V +HSD++ +R +++ D + + +LV ++L G+D+ ++ LV Sbjct: 257 VKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGIDIEDIDLV 316 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 D I IGR AR +G A + I E + + + Sbjct: 317 INYDVPN-----DAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVLGKPVTKAE 371 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 G P+ K K G G +R +P Sbjct: 372 VPAALGPVPEYSPKPFRSGGGKRPQGKKRPGGGGGGNRNHSKP 414 >UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=Magnoliophyta RepID=RH53_ARATH Length = 616 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 53/355 (14%), Positives = 102/355 (28%), Gaps = 33/355 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + + L E + +E+ + + G Sbjct: 158 FGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK-EFRESAPSLDTICLYGGTPI 216 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + P + D + L + + V + + M + A Sbjct: 217 GQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFA-------- 268 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-- 421 E Q++ SAT ++ + + + + G D Sbjct: 269 ---------EDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKL 319 Query: 422 -----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + + ++ + A + +V T TKR A+ L+ L + L Sbjct: 320 ADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARS-FKCEAL 378 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H DI +R + R G F++LV ++ GLD+P V L+ + + + + Sbjct: 379 HGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPN-----NTETFV 433 Query: 537 QTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 GR R G AIL + K I R + + Sbjct: 434 HRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSASMFE 488 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 65/473 (13%), Positives = 132/473 (27%), Gaps = 69/473 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++L+ + +L + + ++ I L +E + V Sbjct: 11 ESLLKAILDLGFENPSEVQEK------------------AIPLLLEKDTDMV-------A 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 L F + EL + L+N E+ Sbjct: 46 LAQTGTGKTAAFGFPLIQKIDADNRNTQALVLSPTRELCLQITNELKNYSKYEKGI---- 101 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + P + D + + + + + + + Sbjct: 102 ----NVVAVYGGASITEQAREIKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADE 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + T SAT + + Sbjct: 158 MLNMGFYEDIVSILSD-----------------TPDQKNTWLFSATMPQEVARIAKQFMS 200 Query: 410 DQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAINERVL--VTTLTKRMAEDLTE 464 + V G + + D +++ A N + V TKR + + E Sbjct: 201 EPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDIFSVVFCRTKRDTQAVAE 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L E G LH D+ +R +++ R + +LV ++ G+D+ V+ V Sbjct: 261 KLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGIDVDNVTHVVNYQLP 320 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + GR R G +I+ K +I +++ E Sbjct: 321 -----DEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQKF-------EEK 368 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 P G+ + +L L I T+ + +NV D+S + L +K+ Sbjct: 369 AIPSGIEICEIQLLHLANKIKDTEVDHEIDNYL-PAINNVLEDLSKEELIKKM 420 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 55/468 (11%), Positives = 132/468 (28%), Gaps = 53/468 (11%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L D ++ L V I + + + ++ Sbjct: 6 LDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSKLAD 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNEL---------------------GYCSGIENYSRF 312 + + T+ + +++ G E S Sbjct: 66 GGYPEDAI-NCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIKSLA 124 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L P ++ + + S + + M Sbjct: 125 LGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDM-----------------GF 167 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP--TGLLDPIIEVRPVAT 430 + QTI SAT + + + + + + I+ Sbjct: 168 SEDIKTIAKKLPSTCQTIMFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEKIQQSAYVC 227 Query: 431 QVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + I+ RV++ + +K+ + + L +HSD+D +R ++ Sbjct: 228 YETQKIEIIKDIFKAGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDV 287 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + + G+ DVLV +++ G+D+ ++++V D + IGR AR Sbjct: 288 MFKFKSGQIDVLVATDIVARGIDIDDITMVINYDVPH-----DVEDYVHRIGRTARADRD 342 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G AI + + + I + ++ + E G P+ + AK + Sbjct: 343 GVAITFVNGDDIYYFQQIESFLEKTIEKNRLPEALGEGPEY----KSNGRPSKNKKAKNR 398 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + + + + + + Q + + + E+ Sbjct: 399 RRHDRDQQSHKDKKSNYRRVKNRQEQPAPTDEKEQHKPQTSEKKSEKV 446 >UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9N3Z4_POPTR Length = 775 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 106/342 (30%), Gaps = 20/342 (5%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + E A R +L + L + ++ E+ + + Sbjct: 190 PIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSS----VCVYG 245 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPL 377 G T L +VV I + + L E L + Sbjct: 246 GVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVE 305 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVA 429 E Q++ SAT + + + + + + G + + + A Sbjct: 306 VILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATA 365 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +LS++ A + ++ T TKR A++++ L LH DI +R + Sbjct: 366 ASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNT-IASEALHGDISQHQRERTL 424 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 R G+F VLV ++ GLD+P V L+ + + + GR R G Sbjct: 425 NGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPN-----DAETFVHRSGRTGRAGKEG 479 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 AIL +++ + + + Sbjct: 480 TAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAE 521 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 187/647 (28%), Gaps = 80/647 (12%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L L + GV G + + + L RP + + P+ A QL ++ F Sbjct: 1 MDDLIRSLGQCKEPLDIYGVRGGAVAWLVGRL-GGLARPLLCVCPDDEQARQLATDLALF 59 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 P + P + + RL+A A+ + ++V Sbjct: 60 SD--------------LPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMV 105 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ A+ P+ + + G D + RLA Y R + G + +RG Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 +IDIFP + LR++ F + VE + FDP++ + V + + Sbjct: 166 IIDIFPPG-QEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEA--------ILLPASDCL 216 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A + + L+ R Q ++ E + + +G + + L Sbjct: 217 YPAADSPAQQALLERHRQWAASLQWDR--QPSRQLEECLRQHRPFAGDQFFLPLLEPAAL 274 Query: 319 GEPPPTLFDYLPADGLLV-VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 YLPA+ L++ VD + R +E LP Sbjct: 275 SP-----LAYLPANTLIIQVDHPRLLQNLALHRERIASNYQELTATAQPALPPDELFLSA 329 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL- 436 + + G + + + + + LL Sbjct: 330 EQLHGHFEQAAGARIFPLAPGE-----ANGQR-VFQIEAGNHVLLKQQLDLKRREEGLLA 383 Query: 437 ---SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +I+Q ERVL+ T R A + E L HG D Sbjct: 384 PLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVT----DGD-------------- 425 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 +L L G D+P + + + G + AA A Sbjct: 426 --HCRIL--KQPLSSGFDLPSEGEHWLSEGELFGDR--------RLESAAAKSRAPATKI 473 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + RR Y I G+ ++I G + Sbjct: 474 VSHDEIN---PGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNS 530 Query: 614 SRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + +++ + Q A++L A + Sbjct: 531 VGKYKGLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDLLKLYAKR 577 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 59/448 (13%), Positives = 127/448 (28%), Gaps = 51/448 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 D+ +++ E ++ L P V + + Sbjct: 598 SFPYDETPGQLKAIGEVIDDLCS----------------SKPMDRLVCGDVGYGKTEVAV 641 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + Q E + G L+ Sbjct: 642 RAAFKVVEDGGQVAVLVPTTVLAEQHAATFRERLA------GFPVRIDSLNRFRSSAEQK 695 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L L A + +V +H + R + + + Sbjct: 696 RLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEE--------HRFGVSHKEKIKKL 747 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQR 442 + ++ATP L+ S V D V + +A D ++ I + Sbjct: 748 RSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTFIARHDDLVIKEAIMRE 807 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V + ++ ++ +V H + + EI+ E +VL Sbjct: 808 LGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQLEEIMVRFVRREINVL 867 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P+ + + I AD+ G Q GR R+ +A Y Sbjct: 868 VCTTIIESGLDIPDANTIIITRADRLGLAEI----YQLRGRVGRS-RQQAYAYL------ 916 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + A+ + + + ++ G + D+ G +++ Sbjct: 917 LVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIRGGGNILGESQSGN-------I 969 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQ 648 V DM LQ+ + +L+ + + + Sbjct: 970 AAVGYDMYLDLLQKTVLDLKRRLREGEE 997 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 61/372 (16%), Positives = 124/372 (33%), Gaps = 25/372 (6%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + LT + +++ +E+ + + + G+P + + L +VV Sbjct: 73 RNPQALILTPTRELAVQVRDEIAKLTHGQR--INVVAVYGGKPLRSQMEKLKRAPHIVVG 130 Query: 339 ESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + + + R L E L K QT+ +SAT Sbjct: 131 TPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVP 190 Query: 398 NYELEKSGGDVVDQVVRPTGLLD---PIIEVRPV---ATQVDDLLSEIRQRAAINERVLV 451 + + + + + IE R ++ D+L E+ + ++ +V Sbjct: 191 PTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLK-REQPQKAIV 249 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TKR E +T+ L + + V +H D+ R + D + +F VLV +++ G+D Sbjct: 250 FCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGID 309 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 + +VS + D + + +GR R G A + + I Sbjct: 310 ISDVSHIINYDIPEF-----SDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEVRID 364 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + + + G + G A T G + + P PK Sbjct: 365 KLLIRDELP--------GFAPYERTDVDTGPGPAATAIGPDG-QKEVGMVTEEPKAEPPK 415 Query: 631 ALQQKIHELEGL 642 +L+ + Sbjct: 416 SLKSRAKRYRKA 427 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 62/435 (14%), Positives = 121/435 (27%), Gaps = 44/435 (10%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + L L + + G + Sbjct: 107 LLASVEAHRGTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQR 166 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P + D+L GL++ D + + + M R A Sbjct: 167 ALRDGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFA------------- 213 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPI 422 K + Q SAT + + D V + Sbjct: 214 ----EDVEKIFSYAPTQRQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQG 269 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + P +V L + + + +V T T+ AE++ L E G + D+ Sbjct: 270 YAIVPFRHKVGALTRIL--ATSDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQ 327 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER +I+ LR G DVLV ++ GLD+ + LV D +E + + IGR Sbjct: 328 KEREKIVERLRSGALDVLVATDVAARGLDVDRIGLVVNFDIPRE-----AEAYVHRIGRT 382 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-G 600 R G+A+ + K I T + ++ ++ + + A Sbjct: 383 GRAGRTGRAVSFVTPHERGKLKFIENTIKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQ 442 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-----------ELEGLMMQHAQN 649 + + + + KA+ ++ + Sbjct: 443 AGRLDLYKQLVRNLVTTGDGEEAGVVDPTKAVDLAATLLALAVGDDGPRARAEQEEYERE 502 Query: 650 LEFEEAAQIRDQLHQ 664 AA+ + + Sbjct: 503 QAEGRAARQARETRK 517 >UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EA02_PARTE Length = 957 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 113/379 (29%), Gaps = 28/379 (7%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + +I ++L + N K E++ T + Sbjct: 122 EQHAMIMESPQPKLLILVPTRELGVQIYDQLLQLIEFYYGNKKQNEKENSPNLTNLKIVC 181 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + P L + + + + + + + + M Sbjct: 182 IYGGNPNKKQQVELIQKGIHVIVATPGRLIELIDEGMVNLNKITMLILDEADRMLDMGFE 241 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + QTI +SAT N + S D ++ Sbjct: 242 PQVR-----------------DIVSTIREDRQTILLSATWPNEVQQLSKEFCYDPILVKI 284 Query: 417 GLLDPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 G PI + Q + L L + ++VL+ TK+ EDL++ L + G Sbjct: 285 GKGAPITQKIICTGQKEKLHVLMNVLDDLIYTDKVLIFAETKKRCEDLSQSLTKQGYFCI 344 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH D +R I++ + ++ ++ GLD+ ++++V D F +S Sbjct: 345 SLHGDKSQDQRDAIMKQFKDSNTRLICATDIASRGLDVKDITVVVNYD-----FPKSFDD 399 Query: 535 LIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I IGR R +G++ A Q+ N+E K + Sbjct: 400 YIHRIGRTGRAGAHGRSFSLLSYEKDEGILADQVITYLNSCNQEVNQELLEFKD---KAL 456 Query: 594 VDILALGQNIAKTKAKGRG 612 Q + Sbjct: 457 KVKQERQQRKLQQYIDNSN 475 >UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa RepID=B3L5Y4_PLAKH Length = 669 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 106/362 (29%), Gaps = 36/362 (9%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ------ 288 + + + +EE + L E Sbjct: 265 TGSGKTIVFVLPLVMICLEGELRCQIEEGEGPLGLIICPSRELATQTHNVIKYFCEFLHE 324 Query: 289 --RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + + G + + P L D L + + ++ + Sbjct: 325 GGKYPMLRSLCMIGGVSTFDQGREIQKGIHMVVATPGRLNDMLNKKRMTLEQCRYLCFDE 384 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + + F + QT+ SAT E + Sbjct: 385 ADRLIDLGFEEEVRNTLDHF-----------------SRQRQTLLFSATMPKKIQEFAKS 427 Query: 407 DVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDL 462 +V+ ++ G + + + + LS + + VL+ K+ +D+ Sbjct: 428 TLVNPIIINVGRAGAANLDVIQEVEYVKEELKLSYLLEVLQKTGPPVLIFCENKKDVDDV 487 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 EYL G +H ++ ER E I R G+ D+LVG ++ +GLD P + V D Sbjct: 488 HEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYD 547 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQKYNE 580 + + + IGR R G A + +K ++ + +++ Sbjct: 548 MP-----KDIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAKQKIPPFL 602 Query: 581 EH 582 E Sbjct: 603 EM 604 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 110/357 (30%), Gaps = 20/357 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + L+ + ++ + + + S + G G + F L ++ Sbjct: 74 PGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVG--YASQFKELAGGLDIL 131 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V I + D L E L K T SAT Sbjct: 132 VATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRHTQMFSAT 191 Query: 396 PGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + + + + + ++ L E+ ++ + R Sbjct: 192 MPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLELLKQQELPGR 251 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 L+ T T+ A+ L +L +H D R ++R+ R G+ VLV ++ Sbjct: 252 TLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLVATDIAAR 311 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 G+D+ +V LV D + IGR AR G+AI A+ + + Sbjct: 312 GIDVKDVRLVINYDLP-----EEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKARNVHK 366 Query: 568 TERRREKQQK----YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 R E P+ K+ + + KG G++ E Sbjct: 367 LLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGYGRNGSRAEA 423 >UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular organisms RepID=A9U6S5_PHYPA Length = 804 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 226/323 (69%), Positives = 261/323 (80%), Gaps = 1/323 (0%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 KLLE QRL QRT++D+EMM E+G+CSGIENYS L+ R G P TL DY P D L+ Sbjct: 21 SQGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLI 80 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 VVDESHVT+PQI MY GDRARK LVE+GFRLPSALDNRPL FEEFE+ Q IYVSAT Sbjct: 81 VVDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEEFESKVNQIIYVSAT 140 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 PG YE+E +V+Q++RPTGLLDP+IEVRP Q+DDL+ EIR+R +ERVLVTTLT Sbjct: 141 PGPYEIEHCDT-MVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRERIDRDERVLVTTLT 199 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+MAEDLT+YL+E G +VRYLHSDI T+ERM I+RDLRLG F VL+GINLLREGLD+PEV Sbjct: 200 KKMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLIGINLLREGLDLPEV 259 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 SLVAILDADKEGFLRSERSLIQTIGRAARN G ++YGDKIT SM KAI ET+RRR Q Sbjct: 260 SLVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESMDKAIKETQRRRTMQ 319 Query: 576 QKYNEEHGITPQGLNKKVVDILA 598 YNE+HGITPQ + KKV D++ Sbjct: 320 IAYNEQHGITPQTIRKKVRDVIE 342 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 95/357 (26%), Gaps = 36/357 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + H + L L + + Q Sbjct: 47 QTGTGKTAAFALPLLHHLCKLPDMPGPGAVRC---LVIAPTRELASQIAEAFSKYGQCLS 103 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P L D + + + + + + M Sbjct: 104 -LRVLKVFGGVPIRKQMRDLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQML 162 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT++ SAT + + + + Sbjct: 163 DLG-----------------FIHPLRRIAAAVPKERQTLFFSATMPSNVSGLANQFLTNP 205 Query: 412 VVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + A + LL ++ + R LV T TK A+ + Sbjct: 206 KKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNLQDESID--RALVFTRTKHGADKVVS 263 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G R +H + +R + R G+ VLV ++ G+D+P VS V + Sbjct: 264 KLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLVATDIAARGIDVPGVSHVFNYEIP 323 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + IGR AR GKAI + + I R + E Sbjct: 324 N-----VPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLDIQRQIRMKIPIVDLPE 375 >UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VHF0_NAEGR Length = 493 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 53/376 (14%), Positives = 116/376 (30%), Gaps = 34/376 (9%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + I + ++ L L E + ++ +F ++ Sbjct: 137 GKTASYIIPMCCQIAKLPRMNDEIAKDGPYGLILVPTRELAEQIEREATKYARQFEFRVQ 196 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G ++ P L D L +++ + + + M + Sbjct: 197 AII-GGVSIEKQSRLIRGGCEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNF 255 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + + QT+ SAT + + +V Sbjct: 256 EKDVNTILE---------------NMPTHIQRQTMLFSATMPPEVENIAMKYLKKRVTVA 300 Query: 416 TGLLDPIIEVRPVAT--------QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G + +E + D LL + + V+V K+ + + +++ Sbjct: 301 VGEVGRAVERIEQEVMWIKHENAKRDKLLELLY---DADPPVIVFCNLKKEVDAIAKFVS 357 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G R +H + R + + G+FDV+V ++L G+D+ V+LV Sbjct: 358 NAGFRSTSIHGNKSQEARNSALEAFKSGKFDVIVATDVLGRGIDISGVTLVVNY-----S 412 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR-REKQQKYNEEHGIT 585 ++ + IGR R G+A+ + K + + + + + +H Sbjct: 413 LPKTISAYTHRIGRTGRAGRTGRAVSFLTKDDTEIMYDLKKMLESTKNTVPEELAQHPSA 472 Query: 586 PQGLNKKVVDILALGQ 601 Q +KK D G Sbjct: 473 AQKPDKKKSDQPIGGG 488 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 104/650 (16%), Positives = 194/650 (29%), Gaps = 73/650 (11%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q A+ + + G + + + P +V+ P A + Sbjct: 11 QETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTAL 70 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P+S+ + I +L +L D Sbjct: 71 LELMG--------------WSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDA 116 Query: 137 V---VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +VA+ + L PD+ L G +D A+ LA+L Y R + Q G+ Sbjct: 117 LSWAIVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGS 176 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RG+++DIFP S ++ +R+E F EE+++L FDP + + + + + P Sbjct: 177 WSRRGDIVDIFPV-SSELPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLI 235 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 +++ + M + E L E + G G+ Sbjct: 236 ADQLRETMPDGLEPLLG---------------------AEGTEQLLNGGTPEGMRRLM-- 272 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P +L DYLP +V+DE + + Sbjct: 273 ---GLAWGQPASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEAGLDEGDR 329 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D E A + + + VDQ L + P Q Sbjct: 330 DRLWPAVLHREIEAAYALTEVFHGFD----MAELLEVDQHPNSFDLASRPVAAYP--NQF 383 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIR 490 L I+ V + + A LEEH R++ D + + R+ Sbjct: 384 GKLGELIKGFQTERTAVWLVSAQPSRA---VALLEEHDCISRFVPNAGDSNAISRLIEQN 440 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 + G L GL +P + + D + G S R A + Sbjct: 441 TPVALKVR---GTAELE-GLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRT--- 493 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + P+ + R ++ + G + + + I + A Sbjct: 494 ------VDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYA-DGILRVAADQ 546 Query: 611 ---RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 G+ R E M A + + + + A +L A + Sbjct: 547 LGSLGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAER 596 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 55/493 (11%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD-----------DIALRVELFDEEVER 223 +L + ++A +R VR +D+ ++ D +VE+ E Sbjct: 562 QLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEM-----EE 616 Query: 224 LSLFDPL-TG---QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 +DP P V + I+ A Sbjct: 617 SFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAML 676 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 Q + E + N R ++ D L + V Sbjct: 677 APTTVLAQQHWRTLSERFAPYPIKVALLNRFRT------ASERKSILDGLKQGTIDAVVG 730 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 +H + + + + + + +SATP Sbjct: 731 THQLLSKGASFQELGLLVVDEE--------QRFGVNQKEKIKVLRKDVDVLTLSATPIPR 782 Query: 400 ELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 L S V + + T I+ + + + S IRQ +V Sbjct: 783 TLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEG 842 Query: 459 AEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E++ L E G ++ H + E + GE DV++ ++ GLD+P V+ Sbjct: 843 IEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVN 902 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 + I DA + G + L Q GR R+ S + +T R+R + Sbjct: 903 TILIEDAHRFGLAQ----LYQLRGRVGRSGIQAHAWLFYPGNAS----LSDTARQRLRAI 954 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + G G + D+ G + + + + D+ + LQ+ + Sbjct: 955 QEFAQLG---SGYQLAMRDMEIRGVGNLLGVQQSG-------QMETIGFDLYMEMLQESL 1004 Query: 637 HELEGLMMQHAQN 649 E++G + ++ Sbjct: 1005 AEIQGQDIPSVED 1017 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 58/363 (15%), Positives = 112/363 (30%), Gaps = 17/363 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A +E N + + L + +++ E+ + + LS G Sbjct: 54 AFAIPIIENIEANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSV-YGGSHIVRQ 112 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + + + D+ + L E + + Sbjct: 113 IKSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTN 172 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLS 437 QT + SAT G E S + +D + + + L+ Sbjct: 173 PNRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMR 232 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + +V TKR + L E L + V LH D+ R ++++ R Sbjct: 233 LL--EIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTI 290 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV ++ GLD+ +V +V D + + IGR AR +G + Sbjct: 291 QILVATDIAARGLDVDDVDIVFNYDLPQLD-----EYYVHRIGRTARAGKSGLSFSLISG 345 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + I + KQ + Q + + DI + + R Sbjct: 346 RDNNRLRQIENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRL 405 Query: 617 IVE 619 + + Sbjct: 406 MEK 408 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 68/431 (15%), Positives = 121/431 (28%), Gaps = 30/431 (6%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + E + + + Sbjct: 26 IQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSRERARPPRAIVVAPTRELAK 85 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 ++ E G + L +VV I + Sbjct: 86 QVAEEFSKSGVG----LTTVTVYGGASYAPQENALRRGVDVVVGTPGRLIDHLERGNLDL 141 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E L + + + QT+ SAT N S + + V+ Sbjct: 142 SAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSATLNNDINRLSRNYLREPVI 201 Query: 414 RP-TGLLDPIIEVRPVATQVD------DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G +V +L+++ E+ +V T TKR A++L L Sbjct: 202 VDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLL-TIYNPEKAIVFTRTKREADELANEL 260 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G LH D+ +R + R G VLV ++ GLD+PEV LV Sbjct: 261 IHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLP-- 318 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + S + GR R G AI+ + R ++ Sbjct: 319 ---QDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGVRFIERPLPT----- 370 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--LM 643 K+V A K + E + + ++ +AL + + ++ G Sbjct: 371 ----PKEVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGLEALTRALAKISGVTEP 426 Query: 644 MQHAQNLEFEE 654 + A L EE Sbjct: 427 TKAASLLSGEE 437 >UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family n=11 Tax=cellular organisms RepID=B3CMR4_WOLPP Length = 408 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 53/370 (14%), Positives = 112/370 (30%), Gaps = 21/370 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L N + + T+ + ++ ++ GE Sbjct: 50 TGKTLAFAIPLVAKLMNEPSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGE 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P + L +++ I I L E + + Sbjct: 110 PIFRQLNQLQKKPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEI 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQV 432 + QT+ SAT ++ + + + + + + Sbjct: 170 MKHLPKIRQTLMFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKY 229 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L++++ Q +++ TKR A+ L + L + +H D+ +R +I Sbjct: 230 GKLVTQLCQ---RKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSF 286 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R G ++V ++ GLD+P + V D +S+ + IGR AR G A+ Sbjct: 287 RRGRNQIMVATDVASRGLDIPHIQHVINYDVP-----QSQADYVHRIGRTARAGAEGFAL 341 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + A+ + +E + ++ + K L + K Sbjct: 342 SFVTPQDKRRLPALAD----KEGEPNFDCSMQSQKRNSKKIFKRPSTLKAKYGRKKINVF 397 Query: 612 GKSRPIVEPD 621 K ++E Sbjct: 398 KKKSRVLEKA 407 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 210/692 (30%), Gaps = 101/692 (14%) Query: 9 SAFKPSGDQPEAIRRLEEGLED---GLAHQTLLGVTGSGKTFTIANVIA---------DL 56 + + + + +I R+ E + +G + +A V D Sbjct: 75 NGLRAALREDPSIARVRAHAEREHAKRSEDLQIGAPNGLRAPLLAEVAEGLAAAQANGDH 134 Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 + + + L ++ + PE+AV F PS +T + S Sbjct: 135 AGVVLAVTATSRESEDLVAALRAYLPEDAVADF-------------PSWETLPHELLSPR 181 Query: 117 EHIEQMRLSATKAM------LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + +VVA V A+ L + L++G Sbjct: 182 SDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIVQGLADLEPVELSIGQRAPFD 241 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 ++RRLA+ YAR D RG F VRG +ID+FP +D +R+E F +E+E + F Sbjct: 242 QVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWFAVA 300 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + +++I +PK + P + +K + + Sbjct: 301 DQRTLTSISGTIEHPKALFAPPCREL--------------LITPEVQSKAAKLKDSFPAA 346 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 LE + G+E+ + L + + P + VV E + + Sbjct: 347 AAMLEKIAGGIAVEGMESLTPVL-----VDSMVPVVAEFPPGSIAVVLEPERVRGRAHDL 401 Query: 351 YRGDRARKET------------LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + E L ++ + VSA + Sbjct: 402 EATNEEFLEAAWSTASDGGAAPLDVSQTLASASFASLAQTRGAALRAGVSWWSVSALGID 461 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-----ERVLVTT 453 E + V +P R V ++L I R N RV+V T Sbjct: 462 DETA------PELDVLSVPAREP----RGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVAT 511 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 A+ L E + + S + + I V + G + Sbjct: 512 DGPGPAQRLAELFHDADIPTARVDSLDEQPQLGIIE-----------VTTAAVGHGFVLD 560 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + +AD G + + R + A+ P + + Sbjct: 561 GLKIGLLTEADLLGRSSASGT---KDMRKMPSKRRNAV------DPLQLRGGDFVVHEQH 611 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 ++ E G + ++ +K A G P + D + + Sbjct: 612 GIGRFLELIQRKVAGTDGSREYLVL-EYAPSKRGAPGDRLFVPTDQLDQITAYVGGD--A 668 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + ++ G +N + +I +L +L Sbjct: 669 PALSKMGGSDWASTKNKARKAVKEIAGELIRL 700 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/442 (14%), Positives = 125/442 (28%), Gaps = 38/442 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P V+ + ++ A + + Q + E Sbjct: 742 KADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSER 801 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 SG + LS G+ + + + VV +H + + Sbjct: 802 ------FSGFPVRVKPLSRFQSGKEAKETAEGVANGSIDVVIGTHRLLSKDFAFKDLGLV 855 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + +SATP LE S + + T Sbjct: 856 IVDEEQRFGVEHKEQ--------LKKMRNNVDVLAMSATPIPRTLEMSLTGIRETSTLAT 907 Query: 417 GLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 + + V D S IR+ +V E + ++++ Sbjct: 908 PPEERHPVLTYVGPYTDKQASAAIRRELMREGQVFFVHNRVSSIERIAAHVQQLVPEARI 967 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + +II D FDVLV ++ GLD+ + + + ADK G + Sbjct: 968 AVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQ--- 1024 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + + +A Y K +GE R K + E G G+ + Sbjct: 1025 --LHQLRGRVGRGRERAYAYFL---YPAEKPLGEVALERLKAVAAHNELG---AGMQLAL 1076 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + V D+ + + + + + G A +++ E Sbjct: 1077 KDLEIRGAGNLLGGEQSG-------HIAGVGFDLYIRLVGEAVADYRGETEDKAADMKIE 1129 Query: 654 ---EAAQIRDQLHQLRELFIAA 672 A D + R A Sbjct: 1130 LPVNAHLPHDYVPGERLRLEAY 1151 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 102/661 (15%), Positives = 195/661 (29%), Gaps = 96/661 (14%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ------RPTMVLAPNKTLAAQLYGE 76 + L G GV F IA + L + + +A + A+L + Sbjct: 17 TALDRLAGGDGAIRASGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQ 76 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---R 133 ++ F P V F P+ D S + IE R++ + Sbjct: 77 LEFFAPGADVLSF-------------PAWDCVPYDRVSPDSDIEARRIATLARLAHAKGG 123 Query: 134 RDVVVV-ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 + ++V +V+A P K L G + ++ RL + R + G Sbjct: 124 KPAIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPG 183 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 + VRG ++D++ R++ F + +E + FDP+T + +T T+ P + + Sbjct: 184 EYAVRGGILDLYVPGHAR-PARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLPISEIPS 242 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + E + E ++ G+E++ Sbjct: 243 GDAAVKMFRQRYVELFGPGKGD-----------------DALYEAVSAGTRYPGVEHWLP 285 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +LFDYLP + + H+ E E + Sbjct: 286 LFYDG-----MDSLFDYLPNAVVTLD---HLADDAAARRLETIADHYEARREGLEQRSFG 337 Query: 372 LDN--------RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 L EE++A + P K+ V Sbjct: 338 APPYKPLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKA------VVQIDFKGKQGRS 391 Query: 424 EVRPVATQVDDLL----SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + D L+ IR ++ +R ++ T E L L H Sbjct: 392 FALERSESSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTH---------- 441 Query: 480 IDTVERMEIIRDLRLG-EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 I +E++ I ++R + V + + G + P+ L I + D G LI+ Sbjct: 442 ISRIEKVANIAEVRKADKSAVSFALLGIESGYETPD--LAIIAEQDILG-----DRLIRR 494 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 R A+ + + + R I G V++ Sbjct: 495 --RKAKKASDVLVEASSLTPGDLMVHADHGIGRFIG------LKTIDAAGAPHDCVELEY 546 Query: 599 LGQNIAKTKAKGRGKSRPI--VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 G + + E + + Q + +L+ + A+ L A Sbjct: 547 AGGDKLFLPIENMELLTRYGSDEGTAQLDKLGGASWQGRKAKLKKRIRAMAEELIKVAAL 606 Query: 657 Q 657 + Sbjct: 607 R 607 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 54/405 (13%), Positives = 119/405 (29%), Gaps = 35/405 (8%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P V + ++ A + + Q Q + Sbjct: 647 DLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQVAVVVPTTLLARQHYQTFVNRFQ 706 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+ + SR ++ + + L A + +V +H + + G Sbjct: 707 --GFPVKVAQASRLVTPKEMTLT----REGLKAGQVDIVVGTHALLAKSIGFKDLGLLIV 760 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + ++ATP L+ + V + V T Sbjct: 761 DEEQHFGVAHKER--------LKNLREEVHVLTLTATPIPRTLQLALTGVREMSVIATPP 812 Query: 419 LDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL- 476 +D + + L + + + +++ +L E +R++ Sbjct: 813 VDRLAVRTFITPFDPVTLREALLRERYRGGQSFYVVPRISDLDEVATFLREQVPEIRFMQ 872 Query: 477 -HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + + +I+ EFDVL+ ++ GLD+P + + + AD G + L Sbjct: 873 AHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHRADMFGLAQ----L 928 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ ++ + + EK+ K G D Sbjct: 929 YQLRGRVGRSKTRAYAMFTIPPNG-------KITPQAEKRLKVLHSLDSLGAGFTLASHD 981 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + V ++ L++ + L+ Sbjct: 982 LDLRGAGNLLGDEQSG-------HIKEVGYELYQSMLEEAVAALK 1019 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 56/398 (14%), Positives = 111/398 (27%), Gaps = 25/398 (6%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + I + + + ++ L + L Sbjct: 181 IQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEILSDSRARARMPRSLILEPTRELAL 240 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 ++ + L GE + L +++ + Sbjct: 241 QVAENFVNYGKYLKLNHALL--IGGESMADQKEVLNRGVDVLIATPGRLLDLFERGGLML 298 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + E L K QT+ SAT + + + Sbjct: 299 NHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTIRKLADAFLHSPKE 358 Query: 414 RPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + I V ++ + L ++ A N +V KR + LT+ L Sbjct: 359 ITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQN--AIVFCNRKRDVDILTKSL 416 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +HG LH D+ R + + E VLV ++ G+D+ +S V D Sbjct: 417 VKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGLSHVFNFDLPFH 476 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN------ 579 + IGR R G A ++A+AI + + + + Sbjct: 477 -----AEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIEKLTGKEIPRMALDGVKQLE 531 Query: 580 -EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + P G +K +N T + + +++P Sbjct: 532 WSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEAKP 569 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 96/364 (26%), Gaps = 28/364 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I + + M L L + LT+ T Sbjct: 54 QTGTGKTAAFLISIISQLQQTPPPKERYM-GEPRALIIAPTRELVVQIAKDAAALTKYTG 112 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ P L D+ + + + + + M Sbjct: 113 LNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 172 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + S QT+ SAT + + + + Sbjct: 173 DMGFIPQVRQIIRQTPPKS---------------ERQTLLFSATFTDDVMNLAKQWTTNP 217 Query: 412 VVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYL 466 + + +E A D + N+ RV+V K + E L Sbjct: 218 AIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKL 277 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G L D+ +R+ + R G VLV ++ G+ + +S V Sbjct: 278 VRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVIN-----F 332 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK-QQKYNEEHGI 584 + IGR R +G +I + + AI R+ K + +E Sbjct: 333 TLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKP 392 Query: 585 TPQG 588 P+ Sbjct: 393 VPRK 396 >UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase prp11 n=1 Tax=Schizosaccharomyces pombe RepID=PRP11_SCHPO Length = 1014 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 64/419 (15%), Positives = 124/419 (29%), Gaps = 27/419 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ + +T + +++ E + N G P L Sbjct: 483 QRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRAC--CAYGGAPIKDQIADLKR 540 Query: 332 DGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +VV I G + R L E + + ++ Sbjct: 541 GAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDR 600 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + V G ++ I+EVRP ++ LL + Sbjct: 601 QTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLG 660 Query: 441 QRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R LV + A+ L L + G +H D +R I D + G FD Sbjct: 661 ELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFD 720 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VL+ +++ GLD+ + LV D + +GR R + G A+ + Sbjct: 721 VLIATSVVARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFITPE 775 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 A I + + +Q +E +KV Sbjct: 776 QEKYAVDIAKALK--MSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETR 833 Query: 618 VEPDNVPMDMSPKALQ----QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 + + + + + + ++ ++R + + A Sbjct: 834 NAERKMQRKAYGEDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFAN 892 >UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 Tax=Amniota RepID=D2I3Z4_AILME Length = 645 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 125/401 (31%), Gaps = 35/401 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + L + + H + L Sbjct: 263 KPTPIQSQAWPIILQGIDLIGVA-QTGTGKTLSYLMPGFIHLNNQPISREERNGPGMLVL 321 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 E +E + + + G + P L Sbjct: 322 ----TPTRELALQVEAECSKYSYKGLKSICIFGGRNREQQIRDITKGIDIIIATPGRLNY 377 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + + +++ + + M + + R Sbjct: 378 LQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPD-----------------R 420 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-------EVRPVATQVDDLLSEIR 440 QT+ +SAT + + + + ++ G LD + + + LL E Sbjct: 421 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQEFL 480 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q + ++V+V + +A+DL+ L G V+ LH D D +R + D R G+ VL Sbjct: 481 QNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKVL 540 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + +L GLD+ +++ V D F R+ + +GR R G +I + Sbjct: 541 IATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDW 595 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +A + + +R + + L+K+ D Sbjct: 596 KIATELIKILKRANQSVPEDLLTMAEQYKLHKQKKDTGKRK 636 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 89/304 (29%), Gaps = 13/304 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + E G R G + L ++V + Sbjct: 77 LVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVG-QRPQMEALRRGVDVLVATPGRLL 135 Query: 345 PQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 R L E L + + QT+ SAT L+ Sbjct: 136 DLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQTLLFSATMPPDILKL 195 Query: 404 SGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRM 458 + + V + I+ R V + D + + R +V T TK Sbjct: 196 ANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDPALRRAIVFTRTKHG 255 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A + + L +H + R + + G VLV ++ G+D+ ++S V Sbjct: 256 ANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATDIAARGIDIDDISHV 315 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 D S + IGR AR +G A+ + D + I ++R Sbjct: 316 INYDLPNI-----PESYVHRIGRTARAGASGVALSFCDSEERAYLADIERLIQKRLPLLA 370 Query: 578 YNEE 581 Sbjct: 371 DPGV 374 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 211 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 60/337 (17%), Positives = 103/337 (30%), Gaps = 14/337 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + T+ + E + G+ Sbjct: 67 TGKTAAFALPLLSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQ 126 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + L ++V + + + + + E L + Sbjct: 127 AYAGQLNQLKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWI 186 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPVATQVDDL 435 E Q SAT + + + D + T D I R + Sbjct: 187 LEQTPPGRQVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATAD-TIRQRFWMVKGTHK 245 Query: 436 LSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + A + ++V TK +L E LE G L+ DI R I + Sbjct: 246 LDALTRILEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFK 305 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ D+LV ++ GLD+ VS V D S + IGR R G AIL Sbjct: 306 KGKIDILVATDVAARGLDVERVSHVINYDIPN-----GAESYVHRIGRTGRAGRAGDAIL 360 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + M K I +T R++ + K I + + Sbjct: 361 FVSPRERWMLKVIEKTTRQQIEMMKLPSTEAINDKRI 397 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 211 bits (536), Expect = 8e-53, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 125/400 (31%), Gaps = 28/400 (7%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L L + E +RL + TQ + G G + S + P Sbjct: 74 QALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGR 133 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + ++L L++ D + + + M V + Sbjct: 134 IQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIA-----------------YTP 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVDDLLSEIRQR 442 QT+ SAT + S V G P IE T + L + Sbjct: 177 PQRQTLLFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISV 236 Query: 443 AA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V TK+ + + E LE G V LH D++ +R +++ VL Sbjct: 237 LSHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GLD+ ++ LV + + IGR R +G A+ Sbjct: 297 VATDVAARGLDIKDLELVVNFE-----LAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEM 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + A AI + + + K + L ++V + G AK + E Sbjct: 352 TRAHAIEDYLQMKLKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIR-PSDILGALTGE 410 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 D+ + + + L+ + +I+ Sbjct: 411 AGLTAADVGKIDMFPVHAYVAIRKASAKRALQQLQQGKIK 450 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 102/357 (28%), Gaps = 17/357 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + + G + + +++ Sbjct: 164 LILAPTRELAVQIEQTIRNVSKSAHIST-ALVLGGVSKLSQIKRIAPGIDVLIATPGRLT 222 Query: 345 PQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + G+ + R L E L N + + QT SAT Sbjct: 223 DLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASL 282 Query: 404 SGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + D V V PV T+ L A V+V T TK Sbjct: 283 AERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHG 342 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ + +LE V +H + R + R G +LV ++ G+D+P +S V Sbjct: 343 ADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHV 402 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQ 576 D + + IGR R +G +I D S +A+ R + + Sbjct: 403 VNYDLP-----DEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIK 457 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + P A+++ K R + A Sbjct: 458 DAPVKLAPAPVAKGPA---PQGQRTEQAESRKAPAHKHRRPAQKAGEQHRAGAHASA 511 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 99/354 (27%), Gaps = 19/354 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L E + T+ +++ R + G Sbjct: 83 PLLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIR-RAVVLGGVSKGP 141 Query: 325 LFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + L ++V + I R L E K Sbjct: 142 QINALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAML 201 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLL 436 A +T SAT + + + + +D + + + L Sbjct: 202 PEARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLH 261 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + A +RV+V T TKR A+ + E L G H + R + D +G Sbjct: 262 TILADEA--CKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGH 319 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 VLV ++ G+D+ ++ V D + + +GR AR +G AI D Sbjct: 320 IRVLVATDIAARGIDVSNITHVVNFDMPL-----DPETYVHRVGRTARKGNSGIAISLCD 374 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 AI +++ + + ++ G + Sbjct: 375 PGERQEITAIERMMKQKLEVIADVGGEALPMP--ERRQHHRAETGPRRDGDRQH 426 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 61/413 (14%), Positives = 127/413 (30%), Gaps = 27/413 (6%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T+ +++ ++ + + G+ L +VV Sbjct: 191 RETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKASIVVAT 250 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I I + L E L + Q SAT + Sbjct: 251 PGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFSATMPD 310 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLSEIRQ--RAAINERVLVTT 453 + + + +E R + + + + + + + VL+ Sbjct: 311 SVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFV 370 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK+ ++ E LE G V L+ D+ R I L++G+ D++V ++ G+D+ Sbjct: 371 RTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGIDVD 430 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 +SLV D S + IGR R G AIL+ M K I + R+ Sbjct: 431 RISLVVNYDIP-----YDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTIEKATRQP 485 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS---- 628 + I+ + ++ + ++ + + + + M Sbjct: 486 IDVMEMPTSEQISKKRVDAFKAKVK---SVVSYGELDQFKELVRALAAEGCNMKDGVALE 542 Query: 629 --------PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + + + ++ NL EA + R + + F+ S Sbjct: 543 DGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGES 595 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 115/677 (16%), Positives = 209/677 (30%), Gaps = 101/677 (14%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-----------TMV 62 + + A+ R E L G + TL V +A++ L + + Sbjct: 22 ALPKSAALTRAVEALRRGDSP-TLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVH 80 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + T +A G + PE V +P+ D S N I Sbjct: 81 VARDGTRSAAFAGALAFVAPEIEVL-------------SIPAWDCQPYDRVSPNPAIAAE 127 Query: 123 RLSATKAML-----ERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRL 176 R++A + E R VVV +V+A+ D VG +D I+ L Sbjct: 128 RMTALSRLARTRSSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWL 187 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 + R G + VRG +ID+ P +R++ F + +E + FDP T + + Sbjct: 188 EANGFLRTGTVRDTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIG 246 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + P + E I + + R E Sbjct: 247 QLRSLDLVPMSEVQLTTETIRRFRQGYVAAFG-----------------AATRDDRLYEA 289 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++E +G+E++ R TLFDYL L+ + G + Sbjct: 290 VSEGRRAAGLEHWMPLFYDRL-----DTLFDYLAGVPLVFDKD---VDDAAGERLGQVQE 341 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS-ATPGNYELEKSGGDVVDQVVRP 415 + E ++ L +Y+S A + + P Sbjct: 342 YHDARCEALKAPQPG-------VAPYKPLGSDALYLSPAEWAKRVEG-ARVARLTPFAVP 393 Query: 416 TGLLDPIIEVRPVATQ-------------VDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 PI++ + D + +R V++ ++ + L Sbjct: 394 ESPGRPIVDCEAEPARNFAPERAQEGVNVFDAAVQHVRALQGSGHHVILAAWSEGSRDRL 453 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L +HG TV R+ L+ G+ DV V + L G + L + + Sbjct: 454 CGVLTDHGLP------KPKTVTRLSDTLALKRGQ-DVAVAVWGLEAGFTIE--RLAVVAE 504 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 D G + R A+ + + R + Sbjct: 505 GDILG------DRLVRPKRKAKRPQDVILEVQALSPGDLVVHADHGIGR------FTGLK 552 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD-MSPKALQQKIHELEG 641 +T G ++I G + +R E +VP+D + A Q + +L+ Sbjct: 553 TVTAAGAPHDCLEIQYNGGLLLLPVENIELLTRYGSEEADVPLDKLGGGAWQARKAKLKR 612 Query: 642 LMMQHAQNLEFEEAAQI 658 +++ A L A + Sbjct: 613 RILEMAGALIKVAAERF 629 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 115/399 (28%), Gaps = 35/399 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + E L Sbjct: 674 PMDRLICGDVGFGKTEVALRAAFVAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVNV 733 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + + L + +V +H + + G + + Sbjct: 734 AQASR------FVSSAELKRVREGLADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHF 787 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L+ + V + + T +D + Sbjct: 788 GVAHKER--------LKALRAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAV 839 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V L+ + + + +++ +L+ +V H + Sbjct: 840 RTFVTPFDPLLVREALLRERYRGGQAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMP 899 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ G+FD+L+ ++ GLD+P + + + AD G + L Q GR Sbjct: 900 AGQLEDVMTAFYEGKFDILLSTTIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGR 955 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ L+ KA+ RR K + + G G D+ G Sbjct: 956 VGRSKARAYALFTTP----EGKALTVQAERRLKVLQSLDTLG---AGFQLASHDLDIRGA 1008 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + V ++ + L+ + L+ Sbjct: 1009 GNLLGDEQSG-------HIKEVGYELYQQMLEDAVAALK 1040 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 106/357 (29%), Gaps = 16/357 (4%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + Q A ++ K + + T+ + ++ ++ Sbjct: 169 GVAQTGTGKTAAFALPLLAHIDPEKREVQALVLAPTRELAMQGAQAIESFAAKSRGVDVA 228 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALD 373 G L +VV + + R D R L E L Sbjct: 229 AVYGGSSYLPQLKALEGGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFA 288 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVR 426 K + SAT + + D + V Sbjct: 289 EDVEKIASEVPEGRISALFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVV 348 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P ++ L + + LV T+ AEDLT L G L D+ ER Sbjct: 349 PERHKIGALARVL--AVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKERE 406 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +++ LR G DVLV ++ GLD+ + LV D +E + + IGR R Sbjct: 407 KLVARLRDGTLDVLVATDVAARGLDVDRIGLVVNFDVPRE-----TDTYVHRIGRTGRAG 461 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 G++I + + I + R +Q + ++ + V +A Sbjct: 462 RTGESITFVTPKERPRLRRIEKQTGSRMEQIELPTPAEVSKLRARRTVEQAMARVAK 518 >UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Yarrowia lipolytica RepID=PRP28_YARLI Length = 575 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 112/367 (30%), Gaps = 17/367 (4%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F I ++ + ++ L L E + F + Sbjct: 212 GKTASFLIPLISYICELPKLDERSKVNGPYGLILAPTRELAMQIKDEAVKFCAPLGFKVV 271 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + GY + + + P L D + L++ +V + + M Sbjct: 272 SVV-GGYSAQEQALAVQEGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGF 330 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEE---FEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + V +A + QT+ +AT + + + Sbjct: 331 EEQVQKVLASLPSSNAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPG 390 Query: 413 VRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + G + ++E + L +I + ++V KR E +++ Sbjct: 391 IVTIGSAGQAGSTVTQLVEFLNTDEKRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDA 450 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G R +H +R + ++ L+ G DVLV ++ GLD+P VSLV Sbjct: 451 LVAAGWRTAIIHGGKQQEQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVN----- 505 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + S IGR R G A+ + + + + + R E E Sbjct: 506 FQMANNIESYTHRIGRTGRAGKRGTAVTFLGQEDDDVLFELKQMISRSEASPNNQELSRH 565 Query: 585 TPQGLNK 591 + K Sbjct: 566 PAARMKK 572 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 62/421 (14%), Positives = 122/421 (28%), Gaps = 18/421 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L V L + T V + + + +R V Sbjct: 9 LGLDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSRLLV 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ ++ + + + ++ G T L Sbjct: 69 EPVARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLTRPI 128 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V + Q+ G R L E L ++ A QT + Sbjct: 129 EVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQTAFF 188 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 +AT L+ + + + ++ L+ I Sbjct: 189 TATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILS-QPD 247 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ +V TKR + L + L G R LH D+ +R + LR G+ +VLV ++ Sbjct: 248 VKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDV 307 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 G+D+ +S V D + + +GR R G A+ + K Sbjct: 308 AARGIDVAGISHVINFDLPRF-----AEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLKK 362 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I ++ E G+ + ++ + G G+ R + + P Sbjct: 363 IERFTG---QKLIVTEIEGMIARFKPQERREGGGGRGGFGGKPRHGNGQGRSYGDRSSAP 419 Query: 625 M 625 Sbjct: 420 R 420 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 104/359 (28%), Gaps = 17/359 (4%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ E + + G R ++ G L + V + Sbjct: 75 IVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQG-QIQRLRRGVEIAVVCPGRLLD 133 Query: 346 QIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + L E + QT+ SAT + + Sbjct: 134 HLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFSATMPDAIRALA 193 Query: 405 GGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + G P+ V PVA + L R VL+ T TK A+ Sbjct: 194 REALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELLRHTDTGSVLIFTRTKHRAQ 253 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L++ L G R L ++ R + R G + +LV ++ G+D+ +S V Sbjct: 254 HLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIAARGIDVAHISHVIN 313 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D ++ + IGR R G A + M +AI K++ Sbjct: 314 YDMP-----QTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIGEPLKRETVP 368 Query: 580 EEHGITPQGLNKKVVDILAL-----GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + D ++ + ++ + D +P+ Sbjct: 369 GFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAPRRHDAQERRSDTAPRRRD 427 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 103/340 (30%), Gaps = 16/340 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ +K + + T+ + + + G Sbjct: 65 TGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGA 124 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKF 379 P + +VV + + L E L + Sbjct: 125 PMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVI 184 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQV 432 + QT+ SAT + + D + + + Sbjct: 185 FKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKT 244 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 +LS + + +++ TK+ DL LE G + L+ DI +R +I L Sbjct: 245 SAVLSLL--EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSL 302 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G D++V ++ GLD+P ++ V +D S + IGR R G+A+ Sbjct: 303 KDGRLDIVVATDVAARGLDVPRITHVFNVDMP-----YDPESYVHRIGRTGRAGREGRAL 357 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L M + I ++ + + + + + K Sbjct: 358 LLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKK 397 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 54/405 (13%), Positives = 108/405 (26%), Gaps = 31/405 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + L L + ++ + + + Sbjct: 48 QTGTGKTAAFMLPSLERLKRYATASTSPAMHPVRMLVLTPTRELAD-QIDQNVQSYIKNL 106 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + L D++ + + V + + M Sbjct: 107 PLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRML 166 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + K + QT+ SAT + + + Sbjct: 167 D-----------------MGFIDDIRKIMQMLPRQRQTLLFSATFSAPIRKLAQDFMNAP 209 Query: 412 VVRPTGLLDPI---IEVRPVAT---QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + +E +A Q +LL + +N +V+V TK+ + +T Sbjct: 210 ETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMN-QVIVFCKTKQSVDRVTRE 268 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + +H D R+E + + G VLV ++ GLD+ E+ V + Sbjct: 269 LVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARGLDIAELPFVINYEMP- 327 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR R +G AI D+ M ++I E + ++ Sbjct: 328 ----AQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKLLIERIEGFEPQ 383 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + K + + P+N D Sbjct: 384 WWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAANDAGA 428 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 55/478 (11%), Positives = 126/478 (26%), Gaps = 47/478 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + + ++ E+ + + L F + + Sbjct: 22 YENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQKVDVKHRAPQALILCPTR 81 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 EL + L + + G + P L Sbjct: 82 ELCLQIAGDLNDYSKYIDGLKILP--------VYGGSSIESQIRMLKTGVHIIVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + V + + M E Sbjct: 134 IDLIERKVAKLETITDVVMDEADEMLNMGFTDSI-----------------NAILEKVPE 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQR 442 T+ SAT + + D G + + D + +++ Sbjct: 177 DRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRI 236 Query: 443 AAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A ++ ++ T++ +++ + L + G LH ++ +R +++ R +L Sbjct: 237 ADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ +++ V G S GR R G +I + Sbjct: 297 VATDVAARGLDVNDLTHVINY-----GLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + I ++ G P G ++ L +I K K + Sbjct: 352 GKMREIERIINKKF-------IMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPG 404 Query: 620 PDNVPMDMSPKALQQKIHELE----GLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 +S + L +++ +E +A +E R + ++ Sbjct: 405 IYRKLEWLSKEDLIKRVVSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHGSA 462 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 13/314 (4%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + T+ + E R L G P + L + Sbjct: 70 AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK-LRGGVDV 128 Query: 336 VVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V + + + D+ L E L + + Q + SA Sbjct: 129 LVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSA 188 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN--ERV 449 T + + + + + + + + ++V Sbjct: 189 TFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQV 248 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV T TK A L E L + G R +H + R + D + G+ VLV ++ G Sbjct: 249 LVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+ E+ V + + IGR R G+A+ + + I + Sbjct: 309 LDIEELPHVVNYELPN-----VPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 Query: 569 ERRREKQQKYNEEH 582 ++ + Sbjct: 364 LKKEIPRIAIPGYE 377 >UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=7 Tax=Fungi/Metazoa group RepID=C4QME8_SCHMA Length = 1544 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 60/420 (14%), Positives = 116/420 (27%), Gaps = 22/420 (5%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + FD T +P + + + L Sbjct: 868 NNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHLEHQAPLNPGDGPIAL 927 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 L + L++ E + G L ++V I Sbjct: 928 LLAPTRELALQIFKETKKLC--QAADARAVCVYGGTGISEQIAELKRGAEIIVCTPGRMI 985 Query: 345 PQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + G + R L E + + ++ E QT+ SAT Sbjct: 986 DMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTLMFSATFPRQM 1045 Query: 401 LEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + G ++ + +V +L + VLV Sbjct: 1046 EILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEG-SVLVFV 1104 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + A++L L ++G LH ID +R +I D + G +L+ ++ GLD+ Sbjct: 1105 EKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGLDVT 1164 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 ++ LV D + GR R G A + A + ++ Sbjct: 1165 DLLLVINYDCPNH-----YEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVRAFKQS 1219 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + K EE ++ + + KG + ++ + AL Sbjct: 1220 GQ--KPPEELMNMWNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVEAQLNSEKRRLQKAAL 1277 >UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Trichomonas vaginalis RepID=A2DH37_TRIVA Length = 541 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 50/379 (13%), Positives = 106/379 (27%), Gaps = 37/379 (9%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + + F + T + + A L Sbjct: 155 ILNGEDLIVTSQTGSGKTAAFMLPVITQLIGTCHSPNPSCV------ALCPTRELAIQIF 208 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 E ++ + T G + + P L D L + + + Sbjct: 209 EETRKFCKGTD-LKTTCVFGGAPITEQIRNLSRGIDIVIATPGRLIDILKQHCITLSEVR 267 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + M + V G+ +P A QT+ SAT + Sbjct: 268 FLILDEADRMLDMGFEPQMQEVINGWDMPP-------------ADDRQTMLFSATFPDAV 314 Query: 401 LEKSGGDVV-DQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + G ++ + +LL I++ + LV Sbjct: 315 RNLARDFMRPKYCRISVGMQDAPKSIEQRFIYCSEMDKFSELLGVIKEV---DGPTLVFA 371 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 K + + +L + V +H + +R+ +R G +++V ++ GLD+ Sbjct: 372 ERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGRANIMVATDVASRGLDIS 431 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 V+ V LD + IGR R +G A + ++ + + + R + Sbjct: 432 NVAHVINLDLPT-----DLDTYTHRIGRTGRAGKHGLATSFFNESNNAFLAQLIQHLRSK 486 Query: 573 EKQQKYNEEHGITPQGLNK 591 G + Sbjct: 487 NLPIPE-GLEEYEASGALR 504 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 102/651 (15%), Positives = 203/651 (31%), Gaps = 88/651 (13%) Query: 21 IRRLEEGLEDGLAHQTLLGVTG-------SGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + ++ L+D A +TL G S + + IA R +++ N+ A L Sbjct: 4 MEKILNLLKDNQALRTLDTDNGTIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFNL 63 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 Y + E Y P+ ++ + + + + R++A AM + Sbjct: 64 YKTLTELV---------------NQVVYFPADESLRVESVAYSYELLGERINALYAMTQD 108 Query: 134 RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++ V + ++ P DL+ K ++ L G ID + + L + Y + Sbjct: 109 KPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFY 168 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RGEV+D++ + D +R+E FD+E+E +S +D + + + I I P T + Sbjct: 169 YSRRGEVLDVYTIQYD-HPVRIEFFDDEIEEISFYDKDSQRRTNKIESIDILPATDMMYE 227 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + Q I+ K + L Q D+E + Y I Y Sbjct: 228 DDGLSQVEASIQTLKDKMTV------KDDFKDELEQTYALDIESLKAHDYNPRIYQYL-- 279 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS-A 371 G T+ DY ++ + + + L E G + Sbjct: 280 ----GLFPETATIMDYARDYTIITASLASILAS-YKTYMEENYLYYHELEEIGQMIRGLK 334 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L N P + + + + + V+ +Q Sbjct: 335 LINNPQTILKRQNVDFVRFRENDQQI--------MFMTQPVMISMANEK------IFISQ 380 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + DLL+ RV++ KR + L +H Sbjct: 381 LKDLLT--------YNRVMIGVDEKRQIDVLVNLFTDHAIPFTL----------TSATNK 422 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + G L L G++ E V + + +++ I+ Sbjct: 423 IYDGVNLFL---GHLPCGMNFVEEKTVLLTSQELFKVQETKKKYIKYRDATK-------- 471 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + K +Y + G++K + I G +I + Sbjct: 472 ----ISDYNELKVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHIAYKGNDILYVPVEQF 527 Query: 612 GKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 R D P + ++ + + A +L A ++R Sbjct: 528 QLIRKYSSRDGKPPRIHALGSPKWAKEKARVRQKVDGLADDLINLYAERMR 578 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 75/461 (16%), Positives = 147/461 (31%), Gaps = 44/461 (9%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 L++E E E P Q V I T P + + ++ A Sbjct: 590 LQLEF---ESEFGYELTPDQAQAVEEIKKDMETPRPMDRLLCGDVGFGKTEVALRACFKA 646 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 +Q + + + L+ + + L Sbjct: 647 IVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPVN------IALLNRFTTTKEKKQILSDL 700 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + ++ +H + + + +G R + N Sbjct: 701 KEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRFGVRQKEKIKNLRKTI--------DV 752 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINER 448 + ++ATP L+ S + T L+ + V+ + L+ + I + + N + Sbjct: 753 LTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIKQVIERELSRNGQ 812 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 V ++ L+ R H +D E +++ D ++D+LV ++ Sbjct: 813 VFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTII 872 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + I +ADK G + L Q GR R+ I Y + + +A+ Sbjct: 873 ETGIDIPNANTIIIENADKFGLAQ----LYQIKGRVGRSAR---IAYAYLL-YTKDRAMT 924 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPM 625 E ++R K + G G + D+ G +I + G D V Sbjct: 925 EEAQKRLTAIKEFTQLG---SGYKIAMRDLSIRGSGDILGGEQAGF--------IDQVGF 973 Query: 626 DMSPKALQQKIHELEGLMMQ--HAQNLEFEEAAQIRDQLHQ 664 DM K LQ I E +G + + + I + + Sbjct: 974 DMYMKILQDAIDEKQGKIKEDDTVPSRNISVDGYIPEDYVE 1014 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 91/310 (29%), Gaps = 32/310 (10%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ E + + G + P L D + + + Sbjct: 86 AAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVATPGRLLDLVQQNVVKF 145 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + M K Q + SAT Sbjct: 146 NQLEILVLDEADRMLD-----------------MGFIRDIKKILALLPAKRQNLMFSATF 188 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERV 449 + E + G V V + I + L+ I+Q ++V Sbjct: 189 SDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQE--DWQQV 246 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV + TK A L + L + +H + R + + D + GE VLV ++ G Sbjct: 247 LVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARG 306 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 LD+ ++ V D + IGR R +G+A+ + + I Sbjct: 307 LDIDQLPQVVNFDLPN-----VPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIERL 361 Query: 569 ERRREKQQKY 578 R ++Q+ Sbjct: 362 INRVLERQEI 371 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 55/453 (12%), Positives = 125/453 (27%), Gaps = 42/453 (9%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +R ++D S ++ + S F + Sbjct: 5 EFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILNSL- 63 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + ++ E ++ R G + + + Sbjct: 64 -------SKEKNHSIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLKA 116 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L DYL + + + + + M Sbjct: 117 IRSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFI-------------- 162 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPII 423 K + T SAT E + + + +D + Sbjct: 163 ---ADVRKIVQQIPNDRITALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYL 219 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 +++ L++ + + ++ +V T TK A+ L +YL+E +H D Sbjct: 220 IYTEKSSKKKVLVNLLNTESI--KKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQG 277 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R+ ++ R + +L+ ++ G+D+ ++S V D + + IGR Sbjct: 278 QRLNALQRFRTNQIRILIATDVAARGIDIKDISHVINFDLP-----EDIENYVHRIGRTG 332 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREK-QQKYNEEHGITPQGLNKKVVDILALGQ 601 R G +I K ++ I + + +Q + + + Sbjct: 333 RAKQEGVSISLVCKEELNLLANIESYIQFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKE 392 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + K + + KS + K ++ Sbjct: 393 RFSNQKKRSKKKSFHEGLIPQKGISPKSKQKRK 425 >UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW1_9BURK Length = 617 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 104/361 (28%), Gaps = 31/361 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + +T + ++ + + L L + L + Sbjct: 43 VSSQTGSGKTFGFLLPVMHRMMTGEQSPMEMLAGPEC-LVLCPTRELAQQVSQDAINLVK 101 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ G G + S R P L D L + + + + + Sbjct: 102 FTKGVRVATVVGGMPYGKQMASL-RGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEAD 160 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + ++ QT+ SAT + + + Sbjct: 161 RMLDLGFS-----------------EDLEAIDQLCGNRIQTLMFSATFAKRIIGLAENIM 203 Query: 409 VDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDL 462 + + I + A + + + +V T T+ AE+L Sbjct: 204 NNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLNHWLEHPDMVQAVVFTSTQIDAENL 263 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L + G R LH + V R + +R G+ VLV ++ GLD+P +S V Sbjct: 264 ARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIKVLVATDVAARGLDVPAISHVINY- 322 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 G + IGR R G A+ + + I R +++ Sbjct: 323 ----GMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIISVRGIERFINSRIPEEQVEGL 378 Query: 582 H 582 Sbjct: 379 E 379 >UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C1EDS5_9CHLO Length = 675 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 119/391 (30%), Gaps = 34/391 (8%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTIYPKTHYVTPR 253 R + P + + + L ++ ++ +G+ ++ +P + P Sbjct: 244 TRKGIARPTPIQIQGLPV--ILSGRDIIGIAF--TGSGKSLTFVLPMIMAAMMEEHRMPL 299 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS-RF 312 E + I + E + + Q M+ G S ++ R Sbjct: 300 EGGEGPVGLILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIGGVDSREQSDIVRN 359 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D L + + ++ + + M Sbjct: 360 AGVHMVTATPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFE---------------- 403 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPV 428 + F QT+ SAT + + +V+ +V G +I+ Sbjct: 404 -DDIRDIYSFFKSQRQTLLFSATMPEKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEY 462 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 Q ++ + VL+ K +D+ EYL G +H ER Sbjct: 463 VKQEAKIVYLLECLQKTAPPVLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWA 522 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 I + + DVLV ++ +GLD P++ V D + + IGR R Sbjct: 523 ISEFKAQRKDVLVATDVAGKGLDFPDIQHVINYDMP-----EEIENYVHRIGRTGRCGKT 577 Query: 548 GKAILYGDKITPS-MAKAIGETERRREKQQK 577 G A + +K + + R +++ Sbjct: 578 GIATTFINKNQSETILLDLKHLLREAKQRIP 608 >UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyostelium discoideum RepID=DDX23_DICDI Length = 834 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 60/438 (13%), Positives = 118/438 (26%), Gaps = 43/438 (9%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 R IL + +L Y + P + I + L ++ ++ Sbjct: 421 PREILEAIRQLGYEKPS------------------PIQMQSIP--ISLTGRDILGIAE-- 458 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F I + + L L E + Q Sbjct: 459 ----TGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQ 514 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 F + + G + Y P L D L L++ +++ + + Sbjct: 515 HFGFRVVSLV-GGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEAD 573 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----ALAPQTIYVSATPGNYELEKS 404 M + T V E+ E + TI SAT + S Sbjct: 574 MMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLS 633 Query: 405 GGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRM 458 + G ++D I + +D + Q +++ K+ Sbjct: 634 KKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKH 693 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + + LEE LHS +R + + +++VL+ + G+ + V+ V Sbjct: 694 CDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHV 753 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D ++ IGR R + G A + + + + Sbjct: 754 INFDIP-----KNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVP 808 Query: 578 YNEEHGITPQGLNKKVVD 595 + Q + D Sbjct: 809 IELLKHPSSQQKHGSSKD 826 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 97/317 (30%), Gaps = 35/317 (11%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + G R + G P + L +V+ I Sbjct: 220 LVLAPTRELAQQIQSVAKDFGASCSIRN-TCIFGGAPKGSQARDLERGVEIVIATPGRLI 278 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + R L E L + + K E Q + SAT Sbjct: 279 DFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVQTL 338 Query: 404 SGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQR-AAINERVLVTTL 454 + + D + G + +EV + + L + +R N ++L+ Sbjct: 339 AEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSEKEGRLTNLLRDIGGDRNNKILIFVE 398 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK+ +D+ +++ G +H D ER ++ + R G+ VLV ++ G Sbjct: 399 TKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGKCAVLVATDVAARG----- 453 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 R + IGR R+ G A + AK + Sbjct: 454 ----------------KIRHYVHRIGRTGRSSQMGTAFTFFTPQNARQAKGLVAVLEEAS 497 Query: 574 KQQ--KYNEEHGITPQG 588 + K E T +G Sbjct: 498 QPINPKVTELLAATTKG 514 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 62/421 (14%), Positives = 127/421 (30%), Gaps = 36/421 (8%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I T + + E L L + Q L + Sbjct: 44 QAQTGTGKTATFLISIFTKLL---SQAKTGGEHHPRALILAPTRELVVQIEKDAQALGKY 100 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T F+++ + G + + P L DYL V D + I + Sbjct: 101 TGFNIQAI-YGGVDYMKQRDALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADR 159 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ + Q + SAT +E + + Sbjct: 160 MFDMGFIADLRFILRRLP---------------PYDKRQNLLFSATLNTRVMELAYEFMN 204 Query: 410 DQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 ++ ++ + LL +R+ R ++ TKR AE L Sbjct: 205 MPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLGLLRKMGME--RTMIFVNTKREAEYL 262 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L + + + D++ +RM+I+ D + G +++ ++ G+ + VS V D Sbjct: 263 QDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPIMIATDVASRGIHIEGVSHVINYD 322 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + + IGR AR G AI + D+ + I + +++ + ++ Sbjct: 323 LP-----QDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIEPIEDFIKQKIPTEWAEDD 377 Query: 582 H--GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + ++ + + K RP + S + E Sbjct: 378 MFVHDYKRTKPRPRTELPHGRGGKPGDRGRSGDKGRPGDKGRPAGRSRSASGSDKPAGEK 437 Query: 640 E 640 + Sbjct: 438 K 438 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 53/335 (15%), Positives = 103/335 (30%), Gaps = 14/335 (4%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L E + L + L++ +E+ E ++ G L Sbjct: 79 QELREPREKPRALVLVPTRELALQVASEIESF--KEGTHPRITTVYGGASIVEQLRNLKR 136 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V I + D L E L + + + Sbjct: 137 GCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVL 196 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--I 445 SAT L+ + + + + + P+ E + +D + + Sbjct: 197 MFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAE 256 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N LV TK A+ + + L+E LH DI +R +I+ R G+ +LV ++ Sbjct: 257 NFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDV 316 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 G+D+ ++ V +G + IGR R G A+ + Sbjct: 317 AARGIDIEGITHVVNYSIPYDGP-----TYTHRIGRTGRAGAKGTAVSFIRPNERRRIDY 371 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + R + K + Q ++ D+ Sbjct: 372 LRRHARGELLEGKIPSIEKVLAQKQDRLFSDLRRQ 406 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 48/326 (14%), Positives = 101/326 (30%), Gaps = 14/326 (4%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 K + L+ + +++ EL G ++ G+ L +V+ Sbjct: 72 GKKPQALILSPTRELSIQIAEELNSLKGK--RKLRIAPFYGGQMIEIQLQRLRDGIDVVI 129 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + L E L K + + SAT Sbjct: 130 GTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLMFSATM 189 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLV 451 L+ + + + E + +D + + + LV Sbjct: 190 PPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDVEQDLYALV 249 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T+ ++L E L+ G RV LH DI ++R +I + +F +L+ ++ G+D Sbjct: 250 FCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATDVAARGID 309 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 + +++ V + + + IGR R NG AI + I Sbjct: 310 VNDLTHVINYSMP-----QGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQREAH 364 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDI 596 ++++ + I + Sbjct: 365 TEIRREELPQGRDIVEMKKQHFSEQL 390 >UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary for prespliceosome formation n=1 Tax=Pichia pastoris GS115 RepID=C4R557_PICPG Length = 784 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 56/436 (12%), Positives = 120/436 (27%), Gaps = 24/436 (5%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 V ++ T +P + + + E+ + Sbjct: 228 SVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLPMFRQIISQPDPESGE 287 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 LT + L++ E N G + V Sbjct: 288 GPIGVILTPTRELALQIFKECKPFMKSLNLKGI--CVYGGASISQQISDIKKRVHFAVCT 345 Query: 340 SHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 I + G + R L E + + +K QT+ SAT Sbjct: 346 PGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRPDRQTLVFSAT 405 Query: 396 PGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI--RQRAAIN 446 + + + + G + + V + LL + + Sbjct: 406 FPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLELLGTFKSKDPT 465 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +VLV + A+ L L + G + LH + ++R II+D + G D+LV ++ Sbjct: 466 GKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGNSDILVATSVA 525 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ ++LV D+ + +GR R + G+A+ + A + Sbjct: 526 ARGLDVKRLNLVINYDSPNH-----MEDYVHRVGRTGRAGSTGEAVTFLTAKDYRAAYDV 580 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + ++ ++ + + + + + + Sbjct: 581 SRALKVSKQLVP---DNVQAVANVFIEQLKTGSAKRGSGYGGKGLEKLQEERELKRQLEK 637 Query: 626 DMSPKALQQKIHELEG 641 + + E Sbjct: 638 TTYGDEVATADPKKEN 653 >UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales RepID=A2U4F0_9FLAO Length = 411 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 105/322 (32%), Gaps = 18/322 (5%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K ++ +T + ++++ S N + G + L ++V Sbjct: 74 KKIKALVITPTRELAIQILENFKSYSKYSNLRS--TAVFGGVSLEPQKEILAKGVDILVA 131 Query: 339 ESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I Q+ G + L E L N K E+ QT+ SAT Sbjct: 132 TPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQTLLFSATIP 191 Query: 398 NYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVL 450 E S V + + ++ P + D L +R N +++ Sbjct: 192 EKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLRNTI--NGKII 249 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TK + L + L ++G V +H D R + I D + + +L+ ++ G+ Sbjct: 250 IFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILIATDVAARGI 309 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ V + D + IGR R +G A + + +I Sbjct: 310 DITNVDAIINFDIPN-----VPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYIASIENLI 364 Query: 570 RRREKQQKYNEEHGITPQGLNK 591 + K + + P+ K Sbjct: 365 EKSIKVIEDHPYPINKPKHTKK 386 >UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, putative n=2 Tax=Eukaryota RepID=A5K9H3_PLAVI Length = 1006 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 96/356 (26%), Gaps = 22/356 (6%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + + + ++ L L E + Sbjct: 630 GKTAAFVLPMLAYVKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCS-CRT 688 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + + + P + D L ++ ++V + + M Sbjct: 689 VAVVGGRNAEAQAFELRKGVEIIIGTPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGF 748 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEA-------LAPQTIYVSATPGNYELEKSGGDV 408 + + + E L T SAT S + Sbjct: 749 EDSVHFILDKIPTTNLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYL 808 Query: 409 VDQVVRPTGLL---DPIIEV---RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 G IE + L EI + ++V K++A+ + Sbjct: 809 RAPAYISIGDPGAGKRSIEQKLEFTTEGKKKQKLQEILEEYEAP--IIVFVNQKKVADII 866 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + + + R LH R + + + G+FD+LV ++ G+D+ V LV D Sbjct: 867 AKSISKMKFRAVALHGGKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFD 926 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + S IGR R G AI + + + + + Sbjct: 927 MP-----KDIESYTHRIGRTGRAGMKGMAISFVTEQDSHLFYDLKQFLISSNNIVP 977 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 56/399 (14%), Positives = 119/399 (29%), Gaps = 33/399 (8%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ E + + + G ++ S P L D + + + Sbjct: 83 AIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKAGIDILIATPGRLNDLIGQGYITL 142 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + M N K + QT+ SAT Sbjct: 143 DAIEMFVLDEADQMLDM-----------------GFLNDIKKVIKLLPKTRQTLLFSATM 185 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINE--RVLV 451 + + + + + + E + +S + ++ RVLV Sbjct: 186 PKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKMSRVLV 245 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T TK A+ + + L + + + +H R + D + G+ VLV ++ G+D Sbjct: 246 FTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIAARGID 305 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + E+S V D I IGR R G AI + + I + Sbjct: 306 ISELSYVVNYDIPN-----QAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHIG 360 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 E P + +K + + TK G+ + + K Sbjct: 361 -----MVIPEVPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVKTEEKILLNEGAKKTK 415 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 A ++ +++ + + + A ++ + ++ Sbjct: 416 AHKKPVYKTGEESKKMSSTKKKGSAIGNKNTVAGKKQQL 454 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 55/416 (13%), Positives = 115/416 (27%), Gaps = 22/416 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L + LE+ + + T+ + E + ++ G+ + Sbjct: 61 FALPLINNMDLESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGS 120 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +VV + + I + D R L E L + Sbjct: 121 QIRALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHV 180 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEI- 439 + Q + SAT + + + + + + + + + Sbjct: 181 SDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALD 240 Query: 440 -RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + V++ TK ++ + L+ G RV ++ D+ +R I+ R + D Sbjct: 241 RLLEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSD 300 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV +++ G+D+ +S V D + + IGR R G +I Sbjct: 301 VLVATDVVARGIDLERISHVINYDMPN-----DSDTYVHRIGRTGRAGREGISISLVPLK 355 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + ++ + + + I Sbjct: 356 EMRFLRTLERFTGSPMQEVFMPSAKDLAQSRI----DHFKTRIASALDKNKSLDNYKEII 411 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + S + L +G + F Q RD Q S Sbjct: 412 TSIRDELELDSDELLAVLTLLAQG------KKSFFPREIQARDDRPQRDRNLRGNS 461 >UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Tax=Eukaryota RepID=DDX42_DICDI Length = 986 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 58/366 (15%), Positives = 106/366 (28%), Gaps = 18/366 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE--IKEELAARRKV 273 D ++ ++ T + + + + Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQP 371 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 LE L + ++ E S + + G L A Sbjct: 372 YLEKGDGPIALFLAPTRELAHQIYLETLKYSKY--FKLKTTVLYGGVSKQQQCKELKAGC 429 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I I + +R L E + L QT+ Sbjct: 430 EIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT E + + D + G + I++V + + L+ Sbjct: 490 SATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLS 549 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 VL+ TK E L+ L + G + LH D + +ER + I+ + G+ ++L+ ++ Sbjct: 550 QGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDV 609 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 GLD+P + V D R S IGR R G A + Sbjct: 610 AARGLDIPLIKNVVNYDT-----SRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVD 664 Query: 565 IGETER 570 + + Sbjct: 665 LIKNLE 670 >UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA) III beta n=1 Tax=Hydra magnipapillata RepID=UPI0001927315 Length = 1349 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 57/388 (14%), Positives = 117/388 (30%), Gaps = 32/388 (8%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L A K+ L ++ + T+ + G + G P Sbjct: 162 FLLPAYMKINLRRSQGTISVLVLAPTRELATQIQLEAEKFGSVAGYYS-ACAYGGAPKRN 220 Query: 325 LFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + + ++V + L E L + + Sbjct: 221 QLQAINSGISVLVATPGRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIRCL 280 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---------------DPIIEVRPV 428 QT+ SAT + + V G++ +I + Sbjct: 281 PRKRQTLMFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSG 340 Query: 429 ATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + +L++ I+ + + VL+ K + LT L G +H D D R + Sbjct: 341 EDKDGELINLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREK 400 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 + R G ++V +L G+D+ +S V D S + IGR R Sbjct: 401 TLAAFRDGSRPIMVATDLASRGIDVRGISAVINYD-----LANSTEDYVHRIGRTGRAGM 455 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 +G++ + + + KAI + + G P +++++ + + Q K Sbjct: 456 SGESFTFLTRSNDDIWKAI--------GIVEVMAKTGQYPPPAVQELINRVKMRQEQNKE 507 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + V ++ +Q Sbjct: 508 RRAAENEQFSKVLIVAEKPSVAKMIAEQ 535 >UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0K2_SCHJY Length = 1056 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 110/367 (29%), Gaps = 25/367 (6%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + L N + +T + +++ E + + + G P L Sbjct: 522 MDQRPLRNGEGPVAVIMTPTRELAVQIFRECKPFAKALDLRA--TCAYGGAPIKDQIAEL 579 Query: 330 PADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +VV I + + R L E + + ++ Sbjct: 580 KRGAEIVVCTPGRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRP 639 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 Q + SAT + + + G ++ ++EVR ++ LL Sbjct: 640 DRQVVLFSATFPRAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLEL 699 Query: 439 IRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + R LV A+ L L + G +H D +R I D ++G Sbjct: 700 LGELYNTQPDVRTLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGI 759 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 FDVL+ ++ GLD+ + LV D + +GR R + G A+ + Sbjct: 760 FDVLIATSVAARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFVT 814 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV--DILALGQNIAKTKAKGRGK 613 A I + + +Q E K V A G + Sbjct: 815 PDQSRYAVGIAKALK--MSKQPVPLELQNLANEFLKNVKSGKEKAAGSGFGGKGLSRLDE 872 Query: 614 SRPIVEP 620 +R Sbjct: 873 TRNAERK 879 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 127/413 (30%), Gaps = 21/413 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L+ K + + T+ + + G LS G Sbjct: 51 TGKTAAFMLPILNALDEGKRDIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLH-GGT 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + + R L E + + Sbjct: 110 DIDKQLSKLKETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQV 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQV 432 Q + SAT + + + + ++ V + + Sbjct: 170 IVHTPSQRQVLLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKT 229 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L+ + +V T+ + LT L+E+G + L+ D+ +R ++++ Sbjct: 230 DALVDVL--EQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQF 287 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R F L+ ++ GLD+ V+ V D S I +GR R GKAI Sbjct: 288 REIRFQFLIATDIAARGLDVEGVTHVINYDLPN-----DVDSYIHRVGRTGRAGQKGKAI 342 Query: 552 LYGDKITPSMA----KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 ++ KA + R Q+ + + G + ++ I Q + + Sbjct: 343 SLISPRQKNLMARFAKATKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQ 402 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + P+ E + P ++ EL L Q+ +N + EA R Sbjct: 403 KEKDKEFSPVREAIKKKTKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARK 455 >UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Poaceae RepID=RH9_ORYSJ Length = 628 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 99/323 (30%), Gaps = 21/323 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 K L + ++ E S +E G P L Sbjct: 163 HNEKNSPGKFPLAIVLAPTRELAKQVEREFSDSSNVE-----TICVYGGTPISQQIRQLN 217 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V+ I + R L E L D + QT Sbjct: 218 YGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQT 277 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVATQVDDLLSEIRQ 441 + SAT + + + + V G D + + +L E+ + Sbjct: 278 LMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIK 337 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A + +V T TKR A+ L+ + + + LH DI +R ++ R G F++L+ Sbjct: 338 EHAKGGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILI 396 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+P V LV + S + GR R GKAI+ Sbjct: 397 ATDVAARGLDIPNVDLVIHFELPN-----SSELFVHRSGRTGRAGKKGKAIVMHSYQQSR 451 Query: 561 MAKAIGETERRREKQQKYNEEHG 583 + + + + G Sbjct: 452 AIRMVENDVGCKFTELPKINVEG 474 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 57/437 (13%), Positives = 113/437 (25%), Gaps = 22/437 (5%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + I + + + + + N LT + Sbjct: 25 TAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQILGLTRGNGHHPRALILTPTREL 84 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMY 351 L++ + + + ++ G P L ++V + Sbjct: 85 ALQVGESIKAYARKVSLRCTVAFGGVRIEP--QIARLERGIDILVATPGRLLDLASQEHL 142 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 E L + +T+ SAT + + Sbjct: 143 SLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATYTPQIKALAAKMLDKP 202 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + ++ LL I +R+LV T+ A LT+ Sbjct: 203 EYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLI--EKQKQDRILVFARTRTWANRLTD 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L HG V LH R + + + G+ +LV ++ GLD+ + LV D Sbjct: 261 KLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDISNLPLVVNYDIP 320 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY--NEE 581 S + IGR R +G A+ ++ AI + R + + E Sbjct: 321 N-----SPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIEDLLRHQIPVEAVKGFTE 375 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 P + + A K + + PK + Sbjct: 376 DSDVPDFVL--YRPGNPKSERNAPRAIKELVAKKSPAKLTVQGRGKKPKDAGPESTTRGN 433 Query: 642 LMMQHAQNLEFEEAAQI 658 + ++ + Sbjct: 434 KNEKSDARKAEDKDTRP 450 >UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickettsia RepID=A8F2F8_RICM5 Length = 415 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 103/317 (32%), Gaps = 12/317 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 LA ++ K + T+ ++ I +Y + GEP P F Sbjct: 56 LAYLLPLIDSFIKNKTTALILVPTRELATQIHSTLNKVTI-SYKINSAVLIGGEPMPKQF 114 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L + +++ I + + DR L E L + + + +F Sbjct: 115 MQLKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPE 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQ 441 Q + SAT + + S + + V G + I + + + +Q Sbjct: 175 KRQVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQ 234 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 V++ TKR A+ L + L+ +H D+ +R +I R ++V Sbjct: 235 LGNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMV 294 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ GLD+P V D + IGR R G A+ + Sbjct: 295 ATDVAARGLDIPHTQHVINYDLPM-----CPEDYLHRIGRTGRAGATGYALSFISPDDVI 349 Query: 561 MAKAIGETERRREKQQK 577 AI + E + Sbjct: 350 RWHAIDRLVNKGESTLR 366 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 102/317 (32%), Gaps = 14/317 (4%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 EN K ++ LT + +++ +E+ G + + G+ L + + Sbjct: 67 ENAKRVQALVLTPTRELAIQVADEINSLKGKKR--IRVLPVYGGQAIHMQLKALKSGVDV 124 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + D L E + + + +T+ SA Sbjct: 125 VVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSA 184 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERV 449 T + + + + D + P+ + D + + + Sbjct: 185 TMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEPDFYG 244 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV T T+ A+ + L E G +H D+ R EI+ + +LV ++ G Sbjct: 245 LVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARG 304 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 +D+P+++ V + ++ + GR R G AI I ++ Sbjct: 305 IDVPDLTHVVN-----FALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKS 359 Query: 569 ERRREKQQKYNEEHGIT 585 + K H + Sbjct: 360 SGIDITKAKLPCIHDVI 376 >UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BS29_GIALA Length = 449 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 112/374 (29%), Gaps = 40/374 (10%) Query: 231 TGQIVSTIPRFTIYPKTHYV------TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + F + + + + LA E + + Sbjct: 7 SQTGSGKTFSFLSPIIAQLISSRAKDAISDDDKNMEQSMSFPLAVILSPTRELTQQIAFM 66 Query: 285 RLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + + + G + + P L D+L L + + Sbjct: 67 CYQLTFKTNLIVRLVYGGEGAREQRGLLKKGCDIVIATPGRLKDFLERRCLSLKYVRVMV 126 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + M + + Y F +P QT+ SAT G Sbjct: 127 LDEADKMLDMGFEPQIRDLVYKFDMPG----------NGPNGNRQTLMFSATFGTGVQAM 176 Query: 404 SGGDVVDQVVRPTGLLDPIIE-------------VRPVATQVDDLLSEIRQRAAINER-- 448 + + ++ G + ++ V ++D L+ ++ +I Sbjct: 177 AKRYLHNEARIHVGQIGSTTTMIKQQFEYFAETAIKSVDKRIDKLIHILKSPGSIPTASF 236 Query: 449 -VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 L+ TK+ + L G RV +H D++ ER ++ + G+ VLV ++ + Sbjct: 237 LTLIFVETKKDIGYIITKLLNAGLRVCEMHGDLEQRERQNNLKSFKDGKTPVLVATDVAQ 296 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM-AKAI 565 G+D+ + V D F + + I IGR R G A + TP + + Sbjct: 297 RGIDIGAIRHVINFD-----FPKDIDTYIHRIGRTGRAGAEGLATSFILLDTPHYILRDL 351 Query: 566 GETERRREKQQKYN 579 + ++ Sbjct: 352 KNILLQSKQPLPKF 365 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 56/378 (14%), Positives = 106/378 (28%), Gaps = 18/378 (4%) Query: 237 TIPRFTIYPKTHYVTPRERI---VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 P + R+ + Q A ++ + + + T+ Sbjct: 26 KTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNIDPSVKQPQILVLTPTREL 85 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYR 352 + E + G+ L ++V I I + Sbjct: 86 AIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLIDHINRGTIK 145 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D + L E L + E QT SAT S + + Sbjct: 146 FDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNISSKYMNNPE 205 Query: 413 VRPTGLLDPII---EVRPVA---TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + + E + ++ + +V T+ L E L Sbjct: 206 QVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAEQYEG--AIVFVRTRNDTVQLAELL 263 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E G L+ D++ R + L+ G +V++ ++ GLD+ +SLV D Sbjct: 264 EREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVAARGLDVDRLSLVINYDIP-- 321 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + + IGR R GKAIL+ + K I Q + + Sbjct: 322 ---QDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTNSDIAQVELPTAKIVE 378 Query: 586 PQGLNKKVVDILALGQNI 603 + + + +N Sbjct: 379 EKRIEALQAKLTLALENK 396 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 106/368 (28%), Gaps = 29/368 (7%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +++ L L L Q +T T + G G + Sbjct: 57 FLLPILHQLMSKPRGNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAV-FGGVGMGPQ 115 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ P L D+ + ++ + + M + + Sbjct: 116 EHAFRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHL- 174 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----I 422 QT++ SAT + + V Sbjct: 175 ---------------PNRKRQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGIT 219 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 V PV+ ++ L + + LV T TK A L L G + +H + Sbjct: 220 QAVYPVSQELKSALLVALLKRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQ 279 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R + + + G + VLV ++ G+D+ + V D + I +GR Sbjct: 280 SQRTQALAGFKDGSYQVLVATDIAARGIDVEALGHVVNFDVPV-----AAEDYIHRVGRT 334 Query: 543 ARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AR G+A + K I +R + + + K V I Sbjct: 335 ARAEATGEAFTFVSPEEEGELKLIERAIKRALPRVTVP-DFDYHAKPTQKLEVPIAERIA 393 Query: 602 NIAKTKAK 609 I K KA+ Sbjct: 394 EIRKKKAE 401 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 96/662 (14%), Positives = 189/662 (28%), Gaps = 94/662 (14%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 + +L+ L G ++ S + +A + + RP +++ + A + Sbjct: 8 AQLLSAPELEKLKRELSCGSDATL--SLSQSARPLMLAALWSQNPRPCLLVVAGEDAADR 65 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 + + +AV + + D + DA+ ++ I R A + Sbjct: 66 TARSLAAWLGNDAVLRYPNRKD-------------YPWSDATPDDAIIGARCRAIAKLSA 112 Query: 133 RRDVVVVASVSAIYGLGDP---DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 V+VVAS A+ P +L VG + + L + YA + Sbjct: 113 GEKVIVVASAHALMRRVPPVGSGYFLPATFT--VGDDVPFEDVASLLVGMGYADTGEVDA 170 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 GTF + G+ +DIFPA++ +R+E F +E++R+ TGQ + I T+ P Sbjct: 171 PGTFHIHGDTVDIFPAQA-TSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPAREL 229 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 +E I L + DLE++ +E Y Sbjct: 230 AFTKEAI-----------------RRAEEALYTRAQENSAIAADLELIQRGAQAPALERY 272 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L G P +++ ++ L+V+ E + Sbjct: 273 LPVLY--GGTASP---LEHISSETLVVLAEPRSLFDDCQRAFDE---------------- 311 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVR 426 A + + T S + + TG + + Sbjct: 312 ---------ISSSAAASKVKLDGLYTDPKAMDFGSQQRLSFSSLLRTGAAVTSELSVVQP 362 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 +A LL +RQ + V+ + E L + E Sbjct: 363 SIAGSDTKLLGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENEPD 422 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + L V + G+ +P +L + +D + + I Sbjct: 423 QNGVYVPLKRGRVTFTDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKRI------- 475 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + + K + G + Sbjct: 476 DPTTVTF-------PFKPGDYVVHATHGIAHFTAIVRQEVAGRERDY---------FLLE 519 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 A P+ + D + + P ++ L A N + A ++ L L Sbjct: 520 YANDDKLYVPLEQVDRITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLY 579 Query: 667 EL 668 Sbjct: 580 TR 581 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 57/446 (12%), Positives = 116/446 (26%), Gaps = 45/446 (10%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + ++ A + Q + Sbjct: 620 KLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDARQVMILCPTTILAQQHYETFFSR 679 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTIPQIGGMYRG 353 + + P L + V+ +H + + Sbjct: 680 FAPFDLKVSVLSR---------FVTPAQQRKALEGFADGTIDVLVGTHRLLSADVNPHDL 730 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + + + + +SATP ++ + V D + Sbjct: 731 GLVIIDEE--------QRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSL 782 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE- 471 T V DL+S IR +V + ++ +EE Sbjct: 783 ILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEAAPE 842 Query: 472 -RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 RV H + E ++ + E DVLV ++ G+D + + I D+ + G + Sbjct: 843 ARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGLAQ 902 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R + + E R ++ G G+ Sbjct: 903 ----LYQLKGRVGRGRQQAYAYFMFPAELP----LTEEATERLTAINEFQDLG---SGMR 951 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + D+ G + S +V D+ + L + + E G + Q Sbjct: 952 IAMRDLEIRGAGSLMGAEQHGNLS-------SVGFDLFTQMLGEAVAEARGESAELEQTE 1004 Query: 651 EFEEAA----QIRDQLHQLRELFIAA 672 D L ++ + Sbjct: 1005 VTINLPADFFLDEDYLPEVDRRVLVY 1030 >UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIT6_9CRYT Length = 538 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 46/355 (12%), Positives = 106/355 (29%), Gaps = 18/355 (5%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + ++ ++ L L LE Q+L ++ Sbjct: 183 GKTLAFLLPLLSYVYKLPLLNFDTAQDGPYGLILAPARELALQIELEAQKLLKKEIGIRT 242 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + + P + D L ++ +++ + + M Sbjct: 243 LSIVGGRSVEKQAFELRRGVEIIIATPGRMRDCLEKSLTVLTQCNYIILDEADRMVDMGF 302 Query: 356 ARKETLVEYG-----FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + R + + LK T SAT + + + + Sbjct: 303 EDCLNYILDQIPANYERGSEEGNTKILKNRYGCRNHRITQMFSATMQSEVEKIARKYLKF 362 Query: 411 QVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + G + I+ + L++ + +++ K+ + + Sbjct: 363 PLYVTIGDMGSGKKSIQQILNFISENKKQSTLINVLNNYEYAIPPIIIFVNQKKTVDIVC 422 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + +G +V LH +R + R G +D+LV ++ G+D+ V+LV D Sbjct: 423 RSIASNGFKVIGLHGGKIQEQRENNLNLFRNGIYDILVATDVAGRGIDIANVNLVINYDV 482 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + IGR R +G AI + + ++ + + Sbjct: 483 P-----STIDTYTHRIGRTGRAGKSGVAISFVTQQDSNLFSELKKILISTNNIVP 532 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 62/464 (13%), Positives = 124/464 (26%), Gaps = 69/464 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +IL+ + L Y Q ++ PA V Sbjct: 12 DSILKSIQYLGYEAPTDVQQ-----------EVIPA---------------VLSGKNIVV 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I + + + ELA + + L N + ++ Sbjct: 46 QSQTGSGKTASFGIPICHQVEWKKRKPQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEAL 105 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + P L D++ + + + + I + Sbjct: 106 F---------GRSSFEKQAQRLKEMTHILVATPGRLLDHMARETVDLSHIETLVIDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ ++ Q + SAT + + Sbjct: 157 MFNMG-----------------FIDQITSIINRIPKKSQKLLFSATMPERVKDLCTLYIK 199 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + +D + ++ L S + + ++ TK E + Sbjct: 200 NPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITE--NPDSSIIFCNTKEQVESV 257 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 T ++E+ G +V LH ++ R +++ D + G F LV ++ GLD+ +VSLV D Sbjct: 258 TNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVAARGLDIDDVSLVVNFD 317 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S +GR AR GKA+ + I ++ Sbjct: 318 VP-----ENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIINDTDHELQKVVKPG- 371 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + K KA + + + Sbjct: 372 -QSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKK 414 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 112/678 (16%), Positives = 200/678 (29%), Gaps = 102/678 (15%) Query: 31 GLAHQTLLGVTGSGKTFTIANVIAD---LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 TL GS +A + + T ++ + T A +L EM F P+ Sbjct: 8 SGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDLR-- 65 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-----DVVVVASV 142 A P +T S ++ + RL+ + +R DVV+V + Sbjct: 66 -----------YALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPAT 114 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 +A+Y L P V +D+ + +L Y+ Q G + VRG +ID+ Sbjct: 115 TALYRLAPPSFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDL 174 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + RV+LFD+E++ + FDP + + + +P + P + + + + Sbjct: 175 FPMGSL-VPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKR 233 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E L + M SGIE Y + Sbjct: 234 WRELLDGDPTKSR-----------------IYKDMGNGVATSGIEYYLPLF-----FDET 271 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 T+FDYL +D +V+ Q DR R LP + Sbjct: 272 ATVFDYLGSDATVVLHGDLEPAFQRFWQDTKDRYRLVRDAPDRPALPPESLFLGAEQFYA 331 Query: 383 EALAPQTIYVSATPG-----NYELEKSGGDVV---------DQVVRPTG----------L 418 A + + A G + D + P G Sbjct: 332 RANGYAQLALKAGSPHPNPLPGGEGIKGDLLPLQGGEESKGDLLPLPLGEGRGEGSPYTE 391 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 D + + V D L RVLV + E L ++L +S Sbjct: 392 FDSLPAMAVVRGAEDPLARFKGHVRNTAHRVLVLAESDGRRESLLDFLRASNVSPPAFNS 451 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++D + + + + L G E + I + + + R Sbjct: 452 ----------LQDFQTSDEKLGIATAALNTGFSWLEEGIDFITETELFAAGVTTRR---- 497 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 RN + + + I + + HGI + Sbjct: 498 -----RNKKQEQVS-------DVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDLGQD 545 Query: 599 LGQN--------IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + A P+ + + A + +H L + A+ Sbjct: 546 KNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKAKRK 605 Query: 651 EFEEAAQIRDQLHQLREL 668 E+ +L + Sbjct: 606 AAEQIRDSAAELLNIYAR 623 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 53/405 (13%), Positives = 120/405 (29%), Gaps = 35/405 (8%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P V + ++ A Q Q ++ Sbjct: 664 DMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAPTTLLAEQHYQTLVDRFA 723 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + E + L + +V +H + Q R Sbjct: 724 K-WPVKVAEMSRFRSAREITAAIKG-----LADGSVDIVVGTHKLLSQDVKFQRLGLLII 777 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + R + + + ++ATP L + + D V T Sbjct: 778 DEE--------HRFGVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAP 829 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RY 475 + V ++ + ++ + + +V ++ E LEE Sbjct: 830 QRRLAIKTFVRSENNGVIREAVLRELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAV 889 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E +++D +++L+ ++ G+D+P + + + ADK G + L Sbjct: 890 AHGQMPERELERVMKDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQ----L 945 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + P + + + + +R + + EE G G + D Sbjct: 946 HQLRGRVGRSHHQ---AYAYLMVPDI-EGLTKQASQRLEAIQQMEELG---SGFYLAMHD 998 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G +++ V + + L + + L+ Sbjct: 999 LEIRGTGEVLGESQSGN-------MLEVGFQLYNEMLSEAVASLK 1036 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 98/338 (28%), Gaps = 17/338 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K ++ LT + +++ + + G N G+ L +V Sbjct: 68 QQKAVQAIVLTPTRELAIQVHDAMAQFVG--NSGLRTLAIYGGQSIDRQMLQLKRGVHIV 125 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V I + + D+ + L E L + K QT SAT Sbjct: 126 VGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSAT 185 Query: 396 PGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + V ++ + + P L I E Sbjct: 186 MPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPIL-EMEDPET 244 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 L+ T+R A +LT L+ G V H D+ R ++ R + +V ++ Sbjct: 245 ALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAAR 304 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ ++S V D S + + IGR R G AI + Sbjct: 305 GLDVDQLSHVINYDLP-----DSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFER 359 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 R+ + I + + K + Sbjct: 360 HVRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERL 397 >UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2ED04_TRIVA Length = 521 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 92/292 (31%), Gaps = 34/292 (11%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + P L D+L + + + + + M Sbjct: 190 VCIYGGEDRHRQINKLRFHPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLD--- 246 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + + +T SAT + + + + + Sbjct: 247 --------------MGFEPQIRAIIASLTKDRETFMFSATWPKEIRQLASDFLSNPIHMH 292 Query: 416 TG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G + + + + + + +++ + +++++ TKR + L+++L+ Sbjct: 293 VGGEELATNERIQQNVLLLQEHEKGEKCVEILKENQS--KKIIIFAKTKRTVQQLSDFLK 350 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEF-DVLVGINLLREGLDMPEVSLVAILDADKE 526 R +H D ER+ + + VLV ++ GLD+ ++ LV D Sbjct: 351 SKSIRCLSIHGDKTQQERVVALDKFKNARTGGVLVATDVAARGLDVTDIDLVLNYD---- 406 Query: 527 GFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQK 577 F + IGR AR G AI + +A + E + + Sbjct: 407 -FPGDIEDYVHRIGRTARGEKTGVAITFFTDENRFLASDLVEVIKNSAQVPP 457 >UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=Viridiplantae RepID=RH3_ARATH Length = 748 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 57/339 (16%), Positives = 104/339 (30%), Gaps = 20/339 (5%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + E A + +L + L + ++ E+ + Sbjct: 159 PIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPY----LSTVCVYG 214 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPL 377 G L +VV I I + L E L + Sbjct: 215 GVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVE 274 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP-------IIEVRPVA 429 E Q++ SAT + + + + + + G D + + + Sbjct: 275 SILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTS 334 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 T +LS++ A + +V T TKR A++++ L LH DI +R + Sbjct: 335 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS-IATEALHGDISQHQRERTL 393 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 R G+F VLV ++ GLD+P V LV + + + GR R G Sbjct: 394 NAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN-----DPETFVHRSGRTGRAGKEG 448 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AIL +++ + + Sbjct: 449 SAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLES 487 >UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 Tax=Eukaryota RepID=DDX23_HUMAN Length = 820 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 119/354 (33%), Gaps = 25/354 (7%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF- 292 S + P ++T +I + E + A E + +EE+ + Sbjct: 437 TGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLG 496 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G + + + P L D L L++ ++V + + M Sbjct: 497 IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMID 556 Query: 353 GDRARKETLVEYGFRLPSALDN---------RPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + FE + QT+ +AT Sbjct: 557 MGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERL 616 Query: 404 SGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + V G ++ + + + + LL+ + + +++ K Sbjct: 617 ARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL--EQGFDPPIIIFVNQK 674 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + L + LE+ G LH +R + +L+ G D+LV ++ G+D+ +VS Sbjct: 675 KGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVS 734 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 +V D ++ I IGR R +G AI + K ++ + + Sbjct: 735 MVVNYDM-----AKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAI 783 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 58/357 (16%), Positives = 114/357 (31%), Gaps = 29/357 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 L G+ + + + P ++ + + L E + + + Sbjct: 58 VLEGRDLIAAAKTGTGKTAAFSLPTLDQLRYRADDEGPLMVIVTPTRELAQQIADTCAPI 117 Query: 289 RTQFDL-EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + + ++ G G + P L D + Sbjct: 118 ARRTNHSTVVLLGGVGYGPQIKKLRAGADIIIATPGRLLDLMRQGA-------------- 163 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 K L E L + + + QT+ SAT + + Sbjct: 164 ---ADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLLFSATIDRSQDKVMFSL 220 Query: 408 VVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDL 462 + D + G + +I+ + T + + RV+V T TK A++ Sbjct: 221 LKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVRERGGFRVIVFTRTKGGADNC 280 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 T+ L + G +H+D +R + + R G+ VLV ++L G+D+PEV V D Sbjct: 281 TKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEVDYVINYD 340 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R G A+ + T ++ K+I + + + + Sbjct: 341 LPMM-----PEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQKFIDQTIEVLDF 392 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 59/368 (16%), Positives = 108/368 (29%), Gaps = 36/368 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + +T + + L L L + T+ Sbjct: 46 QTGTGKTAAFLLPIIHRLMTTKSE-----KRGVRALILAPTRELAEQIYRAGLDLGRGTR 100 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D++ + + + + M+ Sbjct: 101 -LRAAVIYGGVGMFPQTRALRQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMF 159 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT+ SAT + + D Sbjct: 160 DM-----------------GFLPDIKRILSALPSERQTLLFSATMPPAISGLAHETLTDP 202 Query: 412 VVRPTGLLDP--IIEVRPV---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 V G + P +E TQ LL + + A + V+V T TK A++L L Sbjct: 203 VTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLLEEAGK-QSVIVFTRTKHRAKNLALQL 261 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G + L ++ +R + R G F VLV ++ G+D+ +V V D Sbjct: 262 CRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATDIAARGIDVSQVGHVVNFDIP-- 319 Query: 527 GFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + IGR R G+A + M +AI ++ +++ E Sbjct: 320 ---DTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESHMKKPLPRREV-EGFEPD 375 Query: 586 PQGLNKKV 593 P + Sbjct: 376 PSEFRRSY 383 >UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI00017925EA Length = 569 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 51/397 (12%), Positives = 113/397 (28%), Gaps = 38/397 (9%) Query: 193 FRVRGEVIDIFPAESDDIALRVEL-FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F +++ + + + ++ + + + + H + Sbjct: 190 FSSYPDIMKVIKKQKFIVPSPIQCQAWPIIMSGHDLIAIAQTGTGKTLAYILPALIHLLQ 249 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS--GIENY 309 ++ + L E + ++ + G S + Sbjct: 250 QPTPRIKRIGPSVLIL----GPTRELVLQIHDEITKYLHNNIKVVCVYGGGVSALTHQEL 305 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P L D + + + S++ + + M L Sbjct: 306 IQAEKPDIIVATPGRLNDLVGIQAIKLDHVSYMVLDEADRM-----------------LD 348 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------P 421 N+ QTI SAT + + + G LD Sbjct: 349 MGFKNQIELSLRHIRPDKQTILTSATWPTAVQNLANYFAKNPLHITIGSLDLSTVDTVTQ 408 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I + + L + I + N++V++ K + + E R +H Sbjct: 409 KIIILKEHQKEGWLDNFISNDLSKNDKVIIFMRKKTSVDKMYENFNSKNIGCRCIHGGRL 468 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R + D+R G +L+ ++ G+D+ ++SLV D + + +GR Sbjct: 469 QADREASLADIRNGVVSILIATDVASRGIDIHDISLVINYDFPL-----NIEEYVHRVGR 523 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 R G AI K A A+ + ++ Sbjct: 524 TGRAGKTGSAITLFSKYDKFNASALIGVLEKSKQPIP 560 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 59/356 (16%), Positives = 108/356 (30%), Gaps = 19/356 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ E + + G + P L D + + Sbjct: 90 AMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRSGCDIIIATPGRLLDLMRQHEADL 149 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + M + + + + L F + + S Sbjct: 150 DLVQVLVLDEADRMLDMGFWPQVSEIVDATPSE----RQTLLFSATIDRSQDKVMFSLLN 205 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 +E S L+D I + L + IR+ RV+V T TK Sbjct: 206 HPEIIEISHRGD------TADLVDQYIIWTGRREKPALLNAFIRE--KGGFRVIVFTKTK 257 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 A++ T L + G +H+D +R + R G+ V+V ++L G+D+PEV Sbjct: 258 GGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVATDVLARGIDVPEVD 317 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 V D + IGR R G A+ + T ++ ++I + + Sbjct: 318 YVVNYDLPMM-----PEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQKFIGEDIQV 372 Query: 576 QKYN-EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ E P G + + K + K GK D K Sbjct: 373 MEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKKGGRKHDDRGGKKGGRK 428 >UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreococcus tauri RepID=Q012E3_OSTTA Length = 1030 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 47/353 (13%), Positives = 105/353 (29%), Gaps = 21/353 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + + + G G L +V I Sbjct: 408 IMGPTRELVTQIGKEAKRYGK-ALGFNAVSVYGGSGIAAQIGELKRGAEIVACTPGRMID 466 Query: 346 QI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + G + R L E + + + QT+ SAT + Sbjct: 467 ILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILANLRPDRQTVMFSATFPHTME 526 Query: 402 EKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + V G +D ++E+RP + +L + + ++++ Sbjct: 527 ALARAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRVLELLGEWCERG-KIIIFVA 585 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 ++ A+ + L + G LH + +R I D + ++LV ++ GLD+ + Sbjct: 586 SQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVCNILVATSVAARGLDVKD 645 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 + LV D + +GR R G A+ + + A + + + + Sbjct: 646 LRLVINYDTPNH-----LEDYVHRVGRTGRAGQKGTAVTFISEDEEKFAPDLVKALKDSK 700 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + +K + L + + D Sbjct: 701 QT--VPRDVQRLADEFTRKRKEGLVGAAGSGFGGSGFKFDQGEHDALKKQKRD 751 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 110/381 (28%), Gaps = 17/381 (4%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + Q ++ + + + T+ + + + Sbjct: 126 GVAQTGTGKTAAFGLPLLAAIDPSLREVQALVLAPTRELAMQVADAIASFATSIGGLDVV 185 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALD 373 G P L +VV + + R D R L E L Sbjct: 186 ALYGGSPYGPQERALARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFA 245 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVR 426 + Q SAT + + D V + V Sbjct: 246 EDVEEILSHSPDTRQVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVV 305 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + L + + E +V T+ AE++ L G + D+ ER Sbjct: 306 PFRHRTGALARVL--ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKERE 363 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +I+ LR G VLV ++ GLD+ + LV D + S + IGR R Sbjct: 364 KIVERLRDGSLQVLVATDVAARGLDVERIGLVVNFDVP-----KEAESYVHRIGRTGRAG 418 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIA 604 G+A+ + K I ++ + ++ L ++ + A + Sbjct: 419 RSGEALTFIGPHERRALKNIERATKQTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRL 478 Query: 605 KTKAKGRGKSRPIVEPDNVPM 625 + + G+ + D + + Sbjct: 479 ELYRELIGQFVAEHDIDPLEL 499 >UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Ustilago maydis RepID=PRP5_USTMA Length = 1156 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 118/414 (28%), Gaps = 23/414 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + +E ++ +T + +++ E+ + G P + Sbjct: 541 QRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRA--ACVYGGAPISEQIAEMKK 598 Query: 332 DGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +VV I + G + R L E + + +K Sbjct: 599 TADIVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDR 658 Query: 388 QTIYVSATPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + + G ++ I+EVR T+ LL + Sbjct: 659 QTVLFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEIL 718 Query: 440 --RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R L+ + A+DL + L G LH D V+R E I D + G Sbjct: 719 GELYNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNV 778 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 ++ ++ GLD+ ++ LV D + GR R G I + Sbjct: 779 PIVTATSVAARGLDVKQLKLVINYDVPNH-----MEDYVHRAGRTGRAGQKGTCITFITP 833 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 A+ I + E A G R Sbjct: 834 EQDRYARDIIAALKASAAHVPPELEAMAASFKEKLAAGKAKAAGSGFGGKGLDRFELDRE 893 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 K A+ A+ DQL +++ + I Sbjct: 894 KTLKAQKSAY-GEADDDAKAAAAGDSSEDKAKTGAPPGASSSEDQLSKIQGMKI 946 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 60/402 (14%), Positives = 123/402 (30%), Gaps = 33/402 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 L G+ + + ++ P + + L L E ++L + Sbjct: 56 VLEGRDIIAQAQTGTGKTLAFILPILEKIDPSNGSTQALIVTPTRELALQITSEVKKLIE 115 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G + + + P L D+L + + + S + + + Sbjct: 116 DMPDLNVLAVYGGQDVEKQLHKLQRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEAD 175 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + L + QT+ SAT + + S + Sbjct: 176 QMLHIGFLNEMEL-----------------IISQTPASRQTMLFSATMPDDIRKLSKKHL 218 Query: 409 VDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + ++ + + + L+S IR+ ++ T R A Sbjct: 219 KEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIRE--DRPFLAIIFCRTIRRATK 276 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L + L+ LH D+ +R ++++ R E L+ ++ GLD+ V+ V Sbjct: 277 LYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAARGLDVEGVTHVYNY 336 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + S + IGR R G A+ + + + KAI + R +++ Sbjct: 337 DIP-----QDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNIRLPKEESTA 391 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 T G D ++ +A G R Sbjct: 392 TANTTADGEKSSSGD-KPKNRSDRDRRAGGAESRRRTGGRTE 432 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 52/443 (11%), Positives = 117/443 (26%), Gaps = 61/443 (13%) Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 +L LA++ + + Q I + ++ + + L Sbjct: 24 LLNGLADMGFENPTEIQQ------------------QSIPILLKHDGDFIG-------LA 58 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + ELA + +E Sbjct: 59 QTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSK--------HLG 110 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D + + + ++ + + M Sbjct: 111 KLNVVPVFGGANIMNQIRDIRRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEML 170 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 SAT +V Sbjct: 171 NMG-----------------FKEDIDFILSKSDTGRNIWLFSATMAREIKRIVDTYMVQP 213 Query: 412 VVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAAINERVL--VTTLTKRMAEDLTEYL 466 ++ IE + + + D + +R+ +E + V TKR +++ + L Sbjct: 214 EEVRINPKNIVNKNIEHQSIQLKASDKIEALRRFLDYDEDMFGVVFCRTKRDTQNVADQL 273 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +G LH D+ +R ++ R +L+ ++ G+D+ +++ V Sbjct: 274 NNNGYATEALHGDMSQAQRDAAMKRFRNKNLKLLIATDVAARGIDVDDITHVIH-----F 328 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 GR AR G +I + K I Q + IT Sbjct: 329 ALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIASKLGIEFTQGEVPALEAIT 388 Query: 586 PQGLNKKVVDILALGQNIAKTKA 608 + +++ +++ N + Sbjct: 389 QKRISRWSENMIKQEINEKIDEQ 411 >UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=Deltaproteobacteria RepID=A0LLL9_SYNFM Length = 533 Score = 208 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 58/384 (15%), Positives = 107/384 (27%), Gaps = 34/384 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I T + + L L E L++ T Sbjct: 161 QTGTGKTAVFIITMLTQF-LRNPAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTP 219 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 F + + P L D+ L + + I + M Sbjct: 220 FKSVAIFGGMDYEKQKRRLTGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRML 279 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT+ SAT + + Sbjct: 280 DMGFIPDVQRIIH---------------YTPPKAQRQTMLFSATLTAEVTRFASQWTRNP 324 Query: 412 VVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 V + R + T +D+ + + +RV+V T + A LTE L Sbjct: 325 VTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNMITRQNLDRVIVFTNRRDQARRLTERL 384 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +G L ++D +R++ + + R G+ VLV ++ GL + VS V + Sbjct: 385 GSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVLVATDVAARGLHVEAVSHVFNYNMPM- 443 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE-------KQQKY 578 + IGR R +G ++ + + + A+ + + Sbjct: 444 ----DPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIPALEKYLGHEIHCEHPDEDMLET 499 Query: 579 NEEHGITPQGLNKKVVDILALGQN 602 E TP + G+N Sbjct: 500 LPEPTHTPVAAERPRRSGPYRGRN 523 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 103/345 (29%), Gaps = 21/345 (6%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + L + + L + Sbjct: 28 IQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEYVDPSDRDVQALVLTPTRELCIQVT 87 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRG 353 + + G GI+ + G P + L A G +VV I Sbjct: 88 QALRSYGARKGID-----VVAVFGGAPIRSQQAQLRAGGQIVVGTVGRVKDLISRHSLML 142 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 R L E L K + QT SAT + S + + V Sbjct: 143 HGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTALFSATMPPEIRKLSERYLYNPVH 202 Query: 414 R-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 ++ + D L + + + ++ +V TK + L L Sbjct: 203 VKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVL--ESEKPDQAIVFVRTKIRCDQLYRTL 260 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G V+ LH D+ +R ++ + G +LV ++ GLD+ V+ V D Sbjct: 261 RDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVAARGLDISSVTHVVNFDVPT- 319 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 S + IGR R +G+AI + D +AI R Sbjct: 320 ----SPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERHTR 360 >UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=2 Tax=Fungi/Metazoa group RepID=PRP5_BOTFB Length = 1151 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 59/357 (16%), Positives = 109/357 (30%), Gaps = 26/357 (7%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ +++ R + G L ++V I Sbjct: 631 LIMTPTRELATQIHKECKPFLKAMGLRAV-CAYGGAIIKDQIADLKRGAEIIVCTPGRMI 689 Query: 345 PQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + G + R L E + + +K QTI SAT Sbjct: 690 ELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIM 749 Query: 401 LEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI--RQRAAINERVLV 451 + + V G + I+EVR + LL + + R L+ Sbjct: 750 DALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGELYNTDEDARTLI 809 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 + A+DL + L G +H D V+R I D + G +++ ++ GLD Sbjct: 810 FVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLD 869 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 + ++ LV DA + GR R G A+ + + + I + Sbjct: 870 VKQLKLVVNFDAPNH-----LEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALE 924 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 + ++ + K D + G + +G+G R E + Sbjct: 925 QSGQEVPDRLNE------MRKSYKDKVKSGAKKESSGFRGKGLERFDAEREATKARE 975 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 99/331 (29%), Gaps = 12/331 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + LL++N + + T+ + ++ G Sbjct: 51 TGKTAAFSLPILELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGS 110 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV T+ I + + L E L + K Sbjct: 111 SMEDQIRSLKRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKV 170 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLL 436 E QT+ SAT + + V +G + + + Sbjct: 171 LEATPDTKQTLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRY 230 Query: 437 SEIRQR--AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ + ++ T+R +++ + L + G LH D+ +R ++ R Sbjct: 231 PALKRIADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRK 290 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 +LV ++ GLD+ E++ V + GR R G +I+ Sbjct: 291 KTIQILVATDVAARGLDVTELTHVIN-----HKLPDQIENYTHRSGRTGRAGNTGISIVL 345 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + I + +++ + K I Sbjct: 346 VNGKEKGKLRPIEKIIQKKFTEAKVPSGKDI 376 >UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VFC1_CORU7 Length = 497 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 91/288 (31%), Gaps = 32/288 (11%) Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G + + P L D L + + + + M Sbjct: 134 YGGVGFNQQIRALSRGTDVVVGTPGRLLDLHRRGELELSGVEVLVLDEADEMLDQGFLDD 193 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + QT+ SAT L S + V+ Sbjct: 194 IRQ-----------------IMSLTSPDRQTMLFSATMPGPVLSLSREFMKQPVMIQADS 236 Query: 419 L------DPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + ++ + ++D + LS I Q R +V T TKR A + E L G Sbjct: 237 TAAADTHERVTQIAFQSHKLDRMSTLSRILQSPGRG-RTIVFTPTKRQAAMVAEDLAAWG 295 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 RV +H D+ +R + ++ R G DV+V ++ G+D+ +V+ V Sbjct: 296 FRVGAVHGDMRQADREQSLQLFRDGAVDVMVATDVAARGIDVTDVTHVVNYQVP-----E 350 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 ER+ + IGR AR G AI I E + Sbjct: 351 DERTYVHRIGRTARAGKDGTAITLVGWDEVPRWDHISEALGLGLQDPP 398 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 94/664 (14%), Positives = 195/664 (29%), Gaps = 94/664 (14%) Query: 11 FKPSGDQPEAIRRLEEGL--EDGLAHQTLLGVTGSGKTFT-IANVIADLQRPTMVLAPNK 67 P Q + + L + L+G+ ++ + + ++A N Sbjct: 3 LFPKL-QEKLLETLSPFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLLSDKTLWIIAENI 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 + + F S++ ++P + + S + I R+ A Sbjct: 62 EKSHNRMSSLLAF---------QSFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHAL 112 Query: 128 KAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 + + + VVV + A+ P L ++ L+ G I++ A+ L L + R Q Sbjct: 113 NLLAQGKVDVVVTTWPAVVRKTLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQ 172 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G F VRG ++D++ D +R+E D+ + + FD + ++ + R I P Sbjct: 173 VSAPGEFAVRGAILDLYSPAHQD-PVRLEWDDDILASIRSFDINNQKSLAKLSRVEILPG 231 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + ++ P + K L + + + E Sbjct: 232 SEWIPPTGNVKNGALSDW-------------LKDNPVTSLVPGVERFIPSIYEDAQSP-- 276 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 DY +L+++E + + R E L + Sbjct: 277 -------------------LDY-GRKPVLLIEEPSIYRQKKKEWEERIREGWEALTDSDK 316 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 L + + L E + +Y + + D + +E Sbjct: 317 VLLPSPEKAFLFEEAESPQLIEKLYPTI------------YLSDFSDQEDLPFSSPVESL 364 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 Q++D +E +VL T+ + E L G D ER Sbjct: 365 L---QIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPFFPASGLQDIEERE 421 Query: 487 EIIRDLRLGEFDVLVGINL--LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 + R +V L + +G +P +++ + + F + I A Sbjct: 422 PLNRS--------VVWTILGDVEKGFYIPSDNILVLS--ENFLFRKRPEPRIHRAFATA- 470 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + E + + +HGI K+++ G+ Sbjct: 471 -------TSIYRKDRPPL---------NEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFV 514 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ D + P+ + + G + +E +I L Sbjct: 515 VEYRDLEKLYVPVDHADLLQPYRGPEGSTPTLDRIGGQTWNRTRQKVRKEIEKISQDLVD 574 Query: 665 LREL 668 L Sbjct: 575 LYAR 578 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 57/433 (13%), Positives = 124/433 (28%), Gaps = 40/433 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + L+ + G+ Sbjct: 625 PMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVPTTLLAKQHYESFLDRFS--GFPV 682 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 I + SR +S L + ++ + I + + + Sbjct: 683 RICHISRMVSQAEIRAT----RKKLSLGEIDILIGTTALISKETSFRNLGLLIIDEEQRF 738 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + + +SATP L+ S + T Sbjct: 739 GVG--------QKEKLKSRYTSVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPI 790 Query: 425 VRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + T + I + A + +V + + YL + V H ++ Sbjct: 791 RTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRMVHYLAKLFPEVPIGMAHGQME 850 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E++ + +LV ++ GLD+P + + + AD G L Q GR Sbjct: 851 DSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIVNRADMFGISE----LYQIRGR 906 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + +T R+R K + N G G + D+ G Sbjct: 907 VGRSGQQAYAYFLIPSESG----LTDTARKRLKTLQDNTSLG---SGYQIAMRDMEIRGA 959 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLEFEEAAQ--- 657 + V +D+ + +++ I +E + A+ + + Sbjct: 960 GSLLGHQQ-------TGHIALVGLDLYLEMVEEAIQSRIEPEAVPLAREEVRIDLGRESR 1012 Query: 658 -IRDQLHQLRELF 669 D + + Sbjct: 1013 FPEDYIEHPAQRI 1025 >UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPF9_9SPIO Length = 605 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 59/466 (12%), Positives = 130/466 (27%), Gaps = 44/466 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++F ++ L+ + + + + Q E + Sbjct: 32 YIECTPVQEQVFSAGMDGSDLY-VQSQTGTGKTAAYLVTLMQRMLA------QGTESRRP 84 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E +L + T G + + P + Sbjct: 85 ALILVPTRELAVQVEEEAHKLGKYTGLRAASF-YGGVGYQQQEEALKNGVDLIIGTPGRV 143 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + I + M+ + +A Sbjct: 144 IDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLS---------------VLSKAE 188 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + +D ++ + ++ LL Sbjct: 189 ERQTMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAADQKMSLLLGI 248 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R N ++ TK+ E + + L +G +L D+ +R+ II + G+ Sbjct: 249 LRNEKPEN--TIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLT 306 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 LV ++ G+D+ ++++V D E + + IGR AR G A + Sbjct: 307 CLVATDVAARGIDINDLAMVINYDLPNE-----AENYVHRIGRTARAGKTGAAYSLCSEQ 361 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQG-----LNKKVVDILALGQNIAKTKAKGRG 612 I + + E + K + Sbjct: 362 DVYNLPDIEKYIEAKIP-VVIPGEEDFEKDRSADQYIRLDRDSADEERGGRFGRKPRPGE 420 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 KSR + + A + + + Q + + A + Sbjct: 421 KSRREDKDARRGTKTARPASRTADSKRKKKGTQGEDKTDRKSADSL 466 >UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Frankia RepID=A8L2H9_FRASN Length = 671 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 59/396 (14%), Positives = 110/396 (27%), Gaps = 22/396 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + +T + + E + + T+ Sbjct: 130 IQELTLPLALERTDIIGQARTGTGKTLAFGIPIVQVVTAPDEGADGRPQALVVVPTRELC 189 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 + +G+ R LS G L A +VV + Sbjct: 190 VQVTADIARAGLGRGLRVLSV-YGGRAYEPQLSALRAGVDIVVGTPGRLLDLARQKALDL 248 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 R L E L + F T+ SAT + + + V Sbjct: 249 AGVRALVLDEADEMLDLGFLPDVERILAFLPEQRHTMLFSATMPGPVISLARRFMTRPVH 308 Query: 414 R-----PTGLLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYL 466 G P + D + + + +V T+R A+ + E L Sbjct: 309 VRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQAESRGLAMVFVRTRRTADKVAEDL 368 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G +H D+ +R + +R R G+ DVLV ++ G+D+ V+ V Sbjct: 369 ARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVGGVTHVVNYQCP-- 426 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER-------RREKQQKY 578 E + + IGR R +G A+ + D + ++ Sbjct: 427 ---EDEHAYLHRIGRTGRAGGSGVAVTFVDWDDLPRWTLVNRALALPFEEPLETYSTSEH 483 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 E P G+ + +A + + G+ Sbjct: 484 LFELLAIPAGVKGTLPHSARTRAGLAAEEIEDLGEK 519 >UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=Eukaryota RepID=RH24_ORYSJ Length = 770 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 101/336 (30%), Gaps = 17/336 (5%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + LE + + ++ E + Y+ ++ G F L Sbjct: 282 MDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKP--YNLRVAAVYGGVSKFDQFKEL 339 Query: 330 PADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 A +V+ I + + RA L E + + Q Sbjct: 340 KAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 399 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT + + D + G + ++ V P + L E Sbjct: 400 TLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLP 459 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + VLV K +++ L + G R+ LH D D RME ++ + G + VLV Sbjct: 460 GMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLV 519 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITP 559 ++ GLD+ + V D + I IGR R +G A + Sbjct: 520 ATDVAARGLDIKSIKTVVNFDI-----AKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEV 574 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 A + + G + D Sbjct: 575 RFAGELVHCLIAAGQDVPNELMDLAMKDGRFRANRD 610 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 106/344 (30%), Gaps = 13/344 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A LE ++ + + + L++ E+ + G+ Sbjct: 52 TGKTAAFAIPVLENLEAERVPQALIICPTRELCLQVSEEIKRIGKYMK--VKVLAVYGGQ 109 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L ++V I I L E L + + Sbjct: 110 SIGNQIAQLRRGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERI 169 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDDLLSE 438 QT+ SAT L + + + V P I+ T+ +D + Sbjct: 170 LSHVPERRQTMLFSATVSKPILRIARKYMRNPQVMRVEKKHSPKIDEFYFKTREEDKVEL 229 Query: 439 IRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + N L+ TKR + L L G +H D+ +R ++ R G+ Sbjct: 230 LDWILSSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGD 289 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 F +LV ++ G+ +P+V V D E + IGR R +GK+ Sbjct: 290 FSLLVATDVAARGIHVPDVEAVVNYDLPFEN-----EYYVHRIGRTGRAGSSGKSFTLVV 344 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + I +R KQ I +G + +IL Sbjct: 345 GSEVHRLRRIQSFTGKRIKQSNMPSPEEI-RRGYEMDLREILRR 387 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 121/393 (30%), Gaps = 22/393 (5%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + T+ + E G + ++ G+ F L +VV Sbjct: 81 IKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVG 140 Query: 339 ESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + D R L E L + Q SAT Sbjct: 141 TPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMP 200 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--INERVLVT 452 + + + D + I ++ + + A + +++ Sbjct: 201 PAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIF 260 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ D+ E LE G L+ D++ +R I ++ G+ +LV +++ GLD+ Sbjct: 261 VRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDI 320 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 P +SLV D + + + IGR R G +I + + Sbjct: 321 PRISLVINYDLPGDN-----EAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNG 375 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 I + + V++ + + K R IVE ++S Sbjct: 376 TVLNYDLPNIQDIGKIRIERTRVEVAKIVAD------KDISSMREIVEGMAAESEVSMID 429 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 L + + M Q L+ +E + R + Sbjct: 430 LAAAL-LFQKQMKQP---LQPKEDPKPRRDARE 458 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 117/411 (28%), Gaps = 38/411 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + + + A E + + L Sbjct: 46 AEAQTGTGKTASFALPIIEKLSKNPIDGYRPVR------ALVLAPTRELAIQVADNTLEY 99 Query: 289 RTQFDLEMMN-ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + +++ G + P L D L + + ++ + + Sbjct: 100 GRDLGMRVISVYGGVPVENQIKRLKRGTDILVATPGRLLDLLRQKAISLEKLEYLVLDEA 159 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + K ++ A QT+ +AT + Sbjct: 160 DRMLDL-----------------GFIDPIQKIMDYAADDRQTLLFTATADESVEVLAEFY 202 Query: 408 VVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + + + + Q D+LS + + LV TK+ ++ Sbjct: 203 LNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLITEGKWG-QTLVFVRTKKRVDE 261 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 LT+YL + G +H + ER+ ++ + G+ VLV ++ GLD+ + V Sbjct: 262 LTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVAARGLDIESLPYVVNY 321 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + + IGR R G+A+ + I + +++ K + Sbjct: 322 DLPN-----QPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIEKLIKQKIKLRPVPR 376 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGR-GKSRPIVEPDNVPMDMSPK 630 ++ + AK + + + +P + + K Sbjct: 377 IEDGKRLEIDDFADKPMKRKPAKAKQQKRKKVESYQPDKSKKAIRPSLFNK 427 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 64/473 (13%), Positives = 129/473 (27%), Gaps = 76/473 (16%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL+ + L Y + ++ + P E+ Sbjct: 12 DEILKSIEGLGYKNPSKVQEK-----------VIP---------------EILLNKDIIV 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I + ELA ++ E+ R Sbjct: 46 KSQTGSGKTAAFGIPLCEKVDWNENIPQILVLTPTRELAV---------QVSEDITNIGR 96 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + + P + D++ L + + I + Sbjct: 97 FKRIKSVSIFGKEPISEQERKLKQKTHVVVGTPGRILDHIDRGSLNLAQIKYFVIDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + T+ SAT + Sbjct: 157 MLNMG-----------------FIGQVEGIIRRLPKKKVTMLFSATIPEEIKVLCDKYMN 199 Query: 410 DQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 V +D + +++ L + E V++ TK + + Sbjct: 200 KPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEK--PETVVIFAKTKENVDTV 257 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++L+ G V +H + ER+ I+ RLG+F +LV +L G+D+ ++ V D Sbjct: 258 FQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASRGIDVKGITHVINYD 317 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 E + + + IGR R GKAI + + I E + E Sbjct: 318 LPVE-----KEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEFIGFKIPVYNLPE- 371 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 V + G K+K K + + + + + ++ ++ Sbjct: 372 --------KIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLNGGKKKK 416 >UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LXV4_GIALA Length = 658 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 61/424 (14%), Positives = 128/424 (30%), Gaps = 49/424 (11%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER----IVQAMEEIKEELAARRKVLLE 276 + + F T + + LA E Sbjct: 212 ILSSMDILATSQTGSGKTFSFLSPIVTKLINSHAKDTILSEDRESSTSFPLAVILSPTRE 271 Query: 277 NNKLLEEQRLTQRTQFD-LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + D + + G + + P L D+L L Sbjct: 272 LTQQIAFMCYQLTFKTDLIVRLVYGGEGAREQKGLLRKGCDIVIATPGRLKDFLERGCLS 331 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + M + + Y F +P + QT+ SAT Sbjct: 332 LKYVQIMVLDEADKMLDMGFEPQIRDLVYKFDMPG----------NGSNGSRQTLMFSAT 381 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPI-------------IEVRPVATQVDDLLSEIRQR 442 G + + ++ G + ++ V +++ L+ ++ Sbjct: 382 FGGGVQNMAKRYLHNEARIHIGQIGTTTTTIKQQFEYIAETAMKSVDKRIEKLIHXLKSP 441 Query: 443 AAINER---VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +I L+ TK+ + L G RV +H D++ ER +++ + G+ V Sbjct: 442 GSIPTASFLTLIFVETKKDVVYIVTKLLNAGLRVCEMHGDLEQRERQNNLKNFKDGKTPV 501 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ + G+D+ + V D F + + I IGR R G A + T Sbjct: 502 LVATDVAQRGIDIGAIRHVVNFD-----FPKDIDAYIHRIGRTGRAGAEGLATSFILLDT 556 Query: 559 P-SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 P + + + + ++ G K GQ K +++ +R Sbjct: 557 PHHILRELKNILTQSKQPVPKF-----LQDGPPSKY------GQGSGKGRSREYESTRKS 605 Query: 618 VEPD 621 + + Sbjct: 606 TQIE 609 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 62/421 (14%), Positives = 120/421 (28%), Gaps = 25/421 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 +D T IP K R + L + + Sbjct: 21 YDAPTQIQQVAIPAIMQ-GKDILAGARTGTGKTAAFALPILEKLSSKERNKKRPQTRVLV 79 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + + + L G P L + +VV + Sbjct: 80 LVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYP-QIQALKSGIDIVVATPGRLLDL 138 Query: 347 I-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + E + + + Q + SAT + + Sbjct: 139 ALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLFSATYPSEVMSLCN 198 Query: 406 GDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQR--AAINERVLVTTLTKRMAE 460 + D + + I R + D + + + ++ LV T TKR A+ Sbjct: 199 SMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGVESIDQALVFTRTKRSAD 258 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + YL G V LH D R + + + G+ +LV ++ GLD+ E+ V Sbjct: 259 KCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVATDIAARGLDIKELPFVIN 318 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 L+ + IGR R +G AI I + ++ ++ + Sbjct: 319 LELPN-----VPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEKLIDKKLIRESF- 372 Query: 580 EEHGITPQGLNKKVV---DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 G + + GQN+ K+ + I + + P + + + Sbjct: 373 -------SGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDKKDESK 425 Query: 637 H 637 Sbjct: 426 R 426 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 91/313 (29%), Gaps = 12/313 (3%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K + + T+ + E + + G L + ++V Sbjct: 71 KNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQNPQVIVG 130 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + L E L E QT SAT Sbjct: 131 TPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSATMP 190 Query: 398 NYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ--RAAINERVLVT 452 + + D V IE + D L + + +++ Sbjct: 191 HQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWNAIIIF 250 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ + L+E L G L ++ +R +I+ ++ G+ D+++ ++ G+D+ Sbjct: 251 VRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAARGIDI 310 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 ++ V D + IGR R GKAIL+ + + I + Sbjct: 311 ERITHVINWDIP-----GDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATKS 365 Query: 572 REKQQKYNEEHGI 584 + Sbjct: 366 ELIDYPMPSAEKL 378 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 55/394 (13%), Positives = 113/394 (28%), Gaps = 52/394 (13%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F + L +P + + + E L + + Sbjct: 10 DFFTSTLSSLGYKEP---TAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSI 66 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNE-------------------LGYCSGIENYSRFLSG 315 L + T+ +++ G + S Sbjct: 67 PAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGC 126 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D + + L + + + + M + Sbjct: 127 DIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLG-----------------FADE 169 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVA 429 + QT+ SAT + E + + + V + + Sbjct: 170 LDDILDQTPGNVQTLLFSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDR 229 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 LL + + +++L+ +KR A ++ L G + LH D+ ER+ + Sbjct: 230 NNRTMLLKHLIK-QEKWQQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGAL 288 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 D G +L+ +L G+D+P + V D R+ + GR AR G Sbjct: 289 EDFSKGRCKILIATDLAARGIDIPSLPCVLNYDLP-----RATSDYVHRAGRTARAGEAG 343 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 AI + D + + K I + R + +++ Sbjct: 344 LAISFVDHESDAHFKLIEKRIRMKIPREQIPGFE 377 >UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHW2_LIBAP Length = 465 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 60/426 (14%), Positives = 127/426 (29%), Gaps = 22/426 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + + ++ L + Sbjct: 27 IQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAA 86 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 ++ + NY+ ++ G P L +++ + Sbjct: 87 QVADNFEKYGK--NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLM 144 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + E L QT+ SAT + + S + + Sbjct: 145 NNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKR 204 Query: 414 RPTGLL---DPIIEVRPV-----ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 IE V ++ LL ++ Q + ++ K+ +L Sbjct: 205 IEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHS 264 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 LE+ G V +H +ID RM+I+ + + G ++V +L GLD+P+V V D Sbjct: 265 LEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPN 324 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK-YNEEHG 583 + I IGR R GKA K AI + ++ Sbjct: 325 -----RAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLN 379 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + ++ + A N K+ G + + + + +KI +L+ + Sbjct: 380 PPLEKIDIAQHN-HARKNNPIPQKSTGFDRRKKNYSSQKSHIPLKE---SEKISKLQQDI 435 Query: 644 MQHAQN 649 ++ + Sbjct: 436 QENDAD 441 >UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SE71_NEMVE Length = 411 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 30/282 (10%) Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + + P L D L + +++ + + M Sbjct: 147 VCGGVPVSTQTIALREGADVVVATPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEE 206 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + + + A QT+ SAT + V++ + G Sbjct: 207 QLRKIVG--------------LATGTSRARQTLLWSATLPESLERLARSAVLNPITIQVG 252 Query: 418 L-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + + LL +R V+V T + + + +TE L++ Sbjct: 253 PGGLIAPSVQQNVVFLYHYQKPQKLLETLR--TTPYPPVIVFTSSIQNVDYVTELLKQEQ 310 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LHS+ R ++++ R G+ D+LV ++ GLD PEV+ V D Sbjct: 311 FHASGLHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLP-----D 365 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 + I GR R +G A + +A+ + E R Sbjct: 366 TIECYIHRCGRTGRIGHHGIATSFLTL-DCKIAEELKEMLER 406 >UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID=C1E750_9CHLO Length = 611 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 114/367 (31%), Gaps = 28/367 (7%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + +IV+ ++ + L + +++ +E Sbjct: 207 TCGFLLPALAKIVKQGATAAPDMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFC 266 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI------GGMYRGDRARK 358 + G L + ++V + A Sbjct: 267 PAA--GAKVVTLYGGASKGDQLRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHY 324 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG 417 L E L + + K + A QT+ +AT + + + + D + G Sbjct: 325 VVLDEADRMLDMGFEPQIKKIIKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIG 384 Query: 418 ----------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 + IE+ ++D ++ +++ R +V TKR + + ++ Sbjct: 385 DGGDRLTANKSITQTIEIVTEDQKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMK 444 Query: 468 EHGER-VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G R +H D D ER + R G+ +LV ++ GLD+P V++V + D Sbjct: 445 AMGLRSAGAIHGDKDQAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPL- 503 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + IGR R GKA + + A+ + + E+ + E Sbjct: 504 ----QVEDYVHRIGRTGRAGKEGKAHCFFTEEDAGAARELVQILEGAEQ--EVPERLREM 557 Query: 586 PQGLNKK 592 K Sbjct: 558 ADRSRKS 564 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 109/387 (28%), Gaps = 19/387 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + + T+ + E G + + G P Sbjct: 77 LPILHGLARSTARTKPTSLILVPTRELAMQVAESVAKYG-QPLGVRVLPIYGGAPMDQQI 135 Query: 327 DYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +VV + + + D L E L Sbjct: 136 RALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPT 195 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL------LDPIIEVRPVATQVDDLLSEI 439 QT SAT + + + P + Q L+ + Sbjct: 196 ERQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAAL 255 Query: 440 RQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + L+ T+ ++LTE L G R LH + R ++R R G+ Sbjct: 256 GRVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQA 315 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 ++LV ++ GLD+ ++ V + + IGR R G AI + Sbjct: 316 NLLVATDVAARGLDVEHLTHVVNFSLPL-----GIENYVHRIGRVGRAGREGVAITVAEP 370 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 +AI +R + + + + L + V I + S Sbjct: 371 REQGALRAIERHTGQRIEYGQVPTAATLREKRLERTKVAIRETVAAGELEAFRAMFGSLV 430 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLM 643 + P D++ AL+ G + Sbjct: 431 G---ELDPTDVALAALKLAHRARGGDI 454 >UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 n=2 Tax=Hydra magnipapillata RepID=UPI00019259AA Length = 790 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 101/367 (27%), Gaps = 17/367 (4%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + +L+ + T+ + +N G R ++ G G Sbjct: 332 WPMLVHIMAQPVLKEGDGPIA-LICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKW 390 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L +VV I I R E + + Sbjct: 391 E-QTKGLQQGAEIVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIAN 449 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDD 434 Q + SAT + D + G L +EV Q + Sbjct: 450 NVRPDRQCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWN 509 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L VL+ K +E++ L+E G + +H D D ER +++ + Sbjct: 510 WLLSHIVEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQ 569 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 +F +LV ++ GLD+P + V D R + IGR R G A Sbjct: 570 KQFLILVATDVAARGLDIPSIKTVINYDV-----ARDITTHTHRIGRTGRAGEKGIAYTL 624 Query: 554 GDKITPSMAKAIGETERRREKQQK-YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 A + ++ + + K N T G Sbjct: 625 ITPQDTHFAADLVRNLEGANQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRPG 684 Query: 613 KSRPIVE 619 P + Sbjct: 685 LGLPEGK 691 >UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C0Y3_THAPS Length = 501 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 108/365 (29%), Gaps = 26/365 (7%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL--EEQRLTQRTQ 291 S P H++ + + + LA E + E ++L Q Sbjct: 133 TGSGKTAAFGIPLCHHILSFPQSILDTVAEEGPLALVMAPTRELALQIDIEIRKLLSSQQ 192 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + G + P + D + L++ S++ + + M Sbjct: 193 NVVSLAVVGGQSITEQATKLRNGVHVVVGTPGRINDCVEMAYLVLNQCSYIVLDEADRMI 252 Query: 352 RGDRARKETLVEYGFRLP----------SALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 A + + + T SAT + Sbjct: 253 DLGFAPQIEQILDAMGGKLKSENETEAYEQERKDLEILGKAVPSHRLTAMFSATMPSEVE 312 Query: 402 EKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + V+ G + + + Q + L +I +R+ +E+++V Sbjct: 313 RIAKRYLRHPVIVQIGDQDSGKNARITQRVLYLSSSKQKESTLRDILRRSRSDEKIIVFV 372 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 K+ A+ + +E G R LH +R E + R G VLV ++ GLD+P Sbjct: 373 NEKKHADGVGRMVENAGRRCVVLHGGKTQEQREENLGLFRRGGV-VLVATDVAGRGLDIP 431 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 +V V D RS + IGR R G A + + + Sbjct: 432 DVHQVINFDLP----TRSIDNYCHRIGRTGRAGKEGLATSFITDEDEGIMAQLKTYLEST 487 Query: 573 EKQQK 577 Sbjct: 488 NSDIP 492 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 60/406 (14%), Positives = 109/406 (26%), Gaps = 40/406 (9%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L E R+ + + + G + + P L Sbjct: 74 LVVVPTRELAVQVAEELTRIG-KVRGIRSVAIYGGQDFRSQVKALEELPHIVVGTPGRLL 132 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +++ + + D + + M + K + Sbjct: 133 EHMRREYVRTSDIRIAVLDEADKMLDMG-----------------FIDEAEKILKKLPER 175 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + D + P + + L + Sbjct: 176 RQTLLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLL 235 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q E +V T+ +L + L E G LH D+ +R + + GE + Sbjct: 236 DQEK--PELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSI 293 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ V+ V D R S + IGR R N G A + Sbjct: 294 LVATDVAARGLDIQGVTHVYNFDIP-----RDPDSYVHRIGRTGRAGNAGTATTFVTPKD 348 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + +AI + + P G +I A+ + I Sbjct: 349 KTALEAIE-------QAIDHQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDY 401 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + L + L + L D+ + Sbjct: 402 AESLLNSGDPATILAAALRILSKAEEKPQIRLTEIPEPVAPDRKAE 447 >UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Tax=Simiiformes RepID=DDX53_HUMAN Length = 631 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 128/423 (30%), Gaps = 42/423 (9%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +R ++ P +S + + + + + + H + Sbjct: 238 IRVGIVKPTPIQSQAWPI--------ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 289 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 Q L E +E + + + G + Sbjct: 290 SREQRNGPGMLVL----TPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKG 345 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D + + + +++ I + M + Sbjct: 346 VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD-----------------MEFEP 388 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRP 427 + K QT+ SAT + + + + D ++ G L+ + + Sbjct: 389 QIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVT 448 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L E + + N++V++ K +A+DL+ G LH + + ++ Sbjct: 449 TEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQER 508 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + D + G +L+ +++ GLD+ +V+ V D F R+ + +G R Sbjct: 509 AVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYD-----FPRNIDVYVHRVGYIGRTGK 563 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G ++ + MA + + R + + LN++ + + Sbjct: 564 TGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQR 623 Query: 607 KAK 609 + + Sbjct: 624 RKE 626 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 52/355 (14%), Positives = 105/355 (29%), Gaps = 16/355 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A + ++ + + T+ + E G + L+ +P Sbjct: 57 AFAIPICEQVTWDENSPQALVLTPTRELAAQVKEEFMNIGRLKRIKALAI-YGKQPFDRQ 115 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + + + ++ + + E ++ + A Sbjct: 116 KLELKQKTHVVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLA 175 Query: 385 LAPQ-TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIR 440 + T SAT S +++ + I V + S I+ Sbjct: 176 NYDKVTSIYSATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQ 235 Query: 441 Q--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + +V T+ + L + L + +H + ER ++ + + G+F Sbjct: 236 DVTIVENPDSCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFR 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 LV NL G+D+ +SLV D + + GR R GKAI + Sbjct: 296 YLVTTNLAARGIDIESISLVINYDMPL-----DKEVYVHRTGRTGRAGNKGKAITFITPD 350 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + I + E + L D + + KA Sbjct: 351 ERILFREIEDYIGYAIPPMNIPSE--REVERLKPAFEDKMRNRPLTKRNKASQLN 403 >UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Leptospira RepID=Q04Q15_LEPBJ Length = 549 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 59/442 (13%), Positives = 135/442 (30%), Gaps = 52/442 (11%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + I+ + L L E ++L + + + G + Sbjct: 55 FLIPVVHTILTKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 N P L D + + + + + + + M + + + Sbjct: 115 NKDLEGLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLH--- 171 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LD 420 QT+ SAT + + + + V +D Sbjct: 172 --------------KCKNRKQTLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITERID 217 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I ++ + + I + ++ T K + L ++G + + S++ Sbjct: 218 QKIVHLGREEKIPYMTNLIVNSKDEG-QGIIFTNYKANIPKIVYTLRKYGIPITGISSEL 276 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +R+ ++RD + G++ +V ++ G+D+ + +V D + + + IG Sbjct: 277 DQKKRLRLLRDFKSGKYRYMVATDVASRGIDVENIDIVYNYDLP-----QDTENYVHRIG 331 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN--------- 590 R AR GKAI + + + I + +++ + + NEE+ P G Sbjct: 332 RTARAGRMGKAIGFCSESDYVELEKIEKYLKQKIEILEVNEEYIQFPTGKFPPFIGGDSY 391 Query: 591 ------------KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 ++ D + +G + + + D K I E Sbjct: 392 DREKEVHFKQNGRRPHDRGDRAPHKHDRDRRGDKRHTSHIHSHSPTRDSHKKKPAAAIQE 451 Query: 639 LEGLMMQHAQNLEFEEAAQIRD 660 E + + L E + Sbjct: 452 AEFFLQKADSVLSAELKGSKSE 473 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 60/428 (14%), Positives = 122/428 (28%), Gaps = 28/428 (6%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + T + + + + R + + + Sbjct: 22 ETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQRLLEKKFSGQGPIRVLVLAP 81 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ ++E G+E R + G P + ++V + + Sbjct: 82 TRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAA--RRSSVIVACPGRLLDLMNQ 139 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + D+ L E L K Q + SAT + + + + Sbjct: 140 GVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQNLLFSATMPDDIRDLADKIL 199 Query: 409 VDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 P V PV+ + + L + +LV T TK A++L Sbjct: 200 YRPATVQVANTAPAKTVEHVFYPVSQHLKNNLLFKVLEQTDYDSLLVFTRTKHKAKNLAR 259 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G + +L ++ +R + R G F V+V ++ G+D ++ V LD Sbjct: 260 RLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVATDIAARGIDCDRITHVVNLDVP 319 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + IGR R G A + + + + I + + Sbjct: 320 -----DTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEKAVGYSIE--------- 365 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 ++ + D N AK G +P + + + Sbjct: 366 ------HRTLEDFDYDKPNTHPAPAKRGGGRKPAADRKPAGERRPGRGRKPAEARDGDES 419 Query: 644 MQHAQNLE 651 + A + Sbjct: 420 RKPAGERK 427 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 48/404 (11%), Positives = 115/404 (28%), Gaps = 39/404 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + + + + ELA + K L + L+ + Sbjct: 46 VKSQTGSGKTAAYGLPICEMVDWAENKPQALILVPTRELAMQVKQDLTSLGRLKRIKAAA 105 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + P + D+L L + + + + Sbjct: 106 IF---------GKAPFQAQKIELAQKNHIVCGTPGRVLDHLEKGTLSLENLKFFVLDEAD 156 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M ++ ++ ++ SAT + + S + Sbjct: 157 EMLNMG-----------------FIDQVSSIIQYLPPKRMSMLFSATMSDEMKKLSEQFL 199 Query: 409 VDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLT 463 V + P I + T+ + S +++ + ++ T+ +LT Sbjct: 200 QSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCIIFCNTQDRVNELT 259 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E +H + +R ++ + + GEF L+ ++ G+D+ +++ V D Sbjct: 260 MKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGIDVSDMTHVIHYDL 319 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + I GR R +GK I + + + + E K Q Y + Sbjct: 320 P-----YEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGIDFKTQPYPTKE 374 Query: 583 GIT--PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + +K+ + A + + + Sbjct: 375 DAEQHVERFEEKIETPIQKENKQAGVEKDIMKLYFNGGKKKKLR 418 >UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJP8_ENTBH Length = 443 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 94/316 (29%), Gaps = 36/316 (11%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + P L D + + + + + Sbjct: 130 FNHLKPLCVYGGANIFPQKKALVNGIEILIATPGRLIDLHNQGFCPLNRCTFLVLDEADR 189 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV- 408 M + + + QT+ SAT + Sbjct: 190 MLD-----------------MGFEPQLNQIIPKINSHRQTLMWSATWPKEVKSLAYRYTS 232 Query: 409 VDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 D + G ++ +E+ + LL ++ + RVL+ K + Sbjct: 233 QDAIQVTVGDEELKVNEKIEQRVEIVSNNDKEKKLLYTLQDF--RDARVLIFCNKKSTCD 290 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L +L E+ R LH D R I + + G +L+ ++ GLD+ ++ LV Sbjct: 291 KLERFLLENRFRGVALHGDKSQHVRDVIFDNFKKGRDPILIATDVAARGLDVKDIHLVIN 350 Query: 521 LDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPS-MAKAIGETERRREKQQK 577 D + + +GR AR GKA+ + S +AK E ++ Sbjct: 351 YDLPT-----NLEDYVHRVGRTARGTAKEGKALTFFSLEEDSGLAKRFIELLKKGNVTIP 405 Query: 578 YNEEHGITPQGLNKKV 593 + G N+ Sbjct: 406 DELLNIKPKYGNNRSK 421 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 51/412 (12%), Positives = 107/412 (25%), Gaps = 24/412 (5%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + + + L + ++ Sbjct: 72 MMKDLIGIAQTGTGKTASFVLPMIDVMAAGRRRALMPRSLILEPTRELAAQVAENFEKYG 131 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVE 363 + L G L +++ + + + E Sbjct: 132 ANHDLKMALL--IGGVQMGDQLKTLDEGVDVLIATPGRLMDLFERGKILLNGCELLVIDE 189 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI- 422 L + QT+ SAT + + + + T Sbjct: 190 ADRMLDMGFIPDIEFICDKLPETRQTMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTN 249 Query: 423 -----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 +V A Q D L + E ++ K +L ++L+ G +H Sbjct: 250 KDITAFKVPVKARQKRDTLEWLLAN-DQVETAIIFANRKTTVRELNKHLQRQGFASGEIH 308 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 D+D R++ + + G+ ++LV ++ GLD+ VS V D + Sbjct: 309 GDMDQSSRLKELDRFKSGDVNILVASDVAARGLDIKGVSHVFNFDTPWH-----PDDYVH 363 Query: 538 TIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 IGR R G+A A+AI E+ + K + + ++ D Sbjct: 364 RIGRTGRAGAKGRAFTLVADED---AEAIANVEKLTGAKIKVFG-----KEDVRVELADG 415 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 A + + D + + E + ++ Sbjct: 416 SAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDAPRKPRRESAEDKPARKSR 467 >UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=Eukaryota RepID=RH35A_ORYSJ Length = 627 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 103/356 (28%), Gaps = 35/356 (9%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE-------QRLT 287 + V +E ++ + + E K + Sbjct: 228 TGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKE 287 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 ++ G + P L D L + + + ++T+ + Sbjct: 288 AGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEA 347 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + V F+ QT+ SAT + Sbjct: 348 DRLVDLGFEDDIREVFDHFK-----------------AQRQTLLFSATMPKKIQNFAKSA 390 Query: 408 VVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 +V V+ G +I+ + ++ + VLV K + + Sbjct: 391 LVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQKTPPPVLVFCENKADVDYIH 450 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 EYL G +H D ER I + G+ DVLV ++ +GLD P++ V D Sbjct: 451 EYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDM 510 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQK 577 E + + IGR R G A + +K T + + + +++ Sbjct: 511 PAE-----IENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIP 561 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 109/697 (15%), Positives = 211/697 (30%), Gaps = 81/697 (11%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLAPNKTLAA 71 + EA+ + L G +LG G + +A +A + P + +AP+ T A Sbjct: 2 ALSALEALPVVLTALRSGRRK-RVLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQ 60 Query: 72 QLYGEMKEF--FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + ++ F E A Q VP D D S + R++A + Sbjct: 61 TVAADVAFFAGSGEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALER 120 Query: 130 MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + +++ S+ ++ + + ++ + + L+ Y R D Sbjct: 121 LRAGEPELIILSLRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVG 180 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++D++ + R+E + +E+ER+ +FDP + + + + ++P Sbjct: 181 DPGCFAIRGGIMDVWVP-LERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRE 239 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V R +LE +E + T+ + + GI+ Sbjct: 240 TVATGSRTTANALR---------LAVLELGDRIEVP--SSATRQVIANLGAGVDFFGIDA 288 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + ++ DYLPA+ +DE + M VE + Sbjct: 289 LTPVFHDGLA-----SVADYLPANARWYLDEPEALVGLGERMADELDFEYRRAVEAKHLV 343 Query: 369 --PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV- 425 P + E A ++ GD + G P+ Sbjct: 344 AAPEDFFCTREQLREQLRGAAVVGARLDLYDPE---QTKGDRRGVIRVDLGRNAPLRAKL 400 Query: 426 ------------RPVATQVDDLLSE--------IRQRAAINERVLVTTLTKRMAEDLTEY 465 RPV + +L + V++ AE LT Sbjct: 401 EAARGQKGGELLRPVVDHIRELGVHADATLGGALDPSERDPWDVVLVAPNTTHAERLTAM 460 Query: 466 LEEHGERVRYL------HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 L +G R HS +L+ V+ G L EG L+ Sbjct: 461 LRGYGLRPEGTSKQEREHSSGAGGAIELGGLELQAPRLRVIAGT--LSEGFASEGDRLLV 518 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + +++ G + + +A + R Sbjct: 519 VSESEIFGPVARREGRRRRRRKAG------VASLSQLSIGDYVVHVVHGVGRYVG----- 567 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + QG+ G + AK P+ + +S +A K+ + Sbjct: 568 -LTKLAAQGVP---------GDFVIVEYAKKDKLYLPVHRIGEIERYVSAEAKAPKLDRM 617 Query: 640 EGLMMQHAQNLEFEEAAQIRDQLHQL---RELFIAAS 673 G Q + Q+ ++L Q+ RE + Sbjct: 618 GGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHA 654 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 67/457 (14%), Positives = 137/457 (29%), Gaps = 50/457 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + D + + P V + ++ Sbjct: 679 DAIDSVQD-DLSSQR-----------PMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAV 726 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q E M+ G+ N + + VV Sbjct: 727 LAPTTVLVQQHYLTFSERMSAFPLEVGVLNRFSS------PADRKRTLAGIKDGTVDVVV 780 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G + + + + ++ATP Sbjct: 781 GTHRLLSRDVRFKELGLVIIDEEQRFGVKQKDRF--------KKLKTSVDMLTLTATPIP 832 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L S + + + T +D + + D +L E IR+ A ++ Sbjct: 833 RTLHMSLLGMREISMITTAPVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVM 892 Query: 458 MAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E+ + E R + H + + + D E DVLV ++ GLD+P Sbjct: 893 GIEEHAVRIRELVPEARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRA 952 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I AD+ G + L Q GR R+ Y + S+ + + E RRR + Sbjct: 953 NTMFIARADQFGLAQ----LYQLRGRIGRSK---LRAYCYLMVASLER-LSEDARRRLEA 1004 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + E G G N D+ G + + + + + L + Sbjct: 1005 IQRHSELG---AGFNVASQDLEIRGAGDLLGRRQSGS-------IQAIGFEAYARILGEA 1054 Query: 636 IHELEGLM--MQHAQNLEFEEAAQIRD-QLHQLRELF 669 + EL G + + F+ A + D + + Sbjct: 1055 VAELRGDPISQETDPEVAFDVPAFLPDTYVEDVGARL 1091 >UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=root RepID=IF4A3_HUMAN Length = 411 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 70/458 (15%), Positives = 129/458 (28%), Gaps = 78/458 (17%) Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIID----------QRAILRRLAELQYARNDQAFQ 189 S SA L + K + +D + +LR + + + Q Sbjct: 9 TSGSARKRLLKEEDMTK--VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 R ++ ++ + + F+I Sbjct: 67 R---AIK-----------------------QIIKGRDVIAQSQSGTGKTATFSISVLQCL 100 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + ELA + + L + G G + Sbjct: 101 DIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHA---------CIGGTNVGEDIR 151 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P +FD + L + + + M Sbjct: 152 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG--------------- 196 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPI 422 + + A Q + +SAT + LE + + D + + Sbjct: 197 --FKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF 254 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 D L ++ I + V+ TKR + LTE + E V +H D+ Sbjct: 255 FVAVEREEWKFDTLCDLYDTLTITQAVI-FCNTKRKVDWLTEKMREANFTVSSMHGDMPQ 313 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER I+++ R G VL+ ++ GLD+P+VSL+ D + I IGR+ Sbjct: 314 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPN-----NRELYIHRIGRS 368 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 R G AI + + + I + + + N Sbjct: 369 GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 406 >UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=3 Tax=Agaricomycotina RepID=PRP5_CRYNE Length = 1072 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 55/395 (13%), Positives = 112/395 (28%), Gaps = 26/395 (6%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL-ENNKLLEEQRLTQ 288 T + I + + + + + + Sbjct: 424 ETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMS 483 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI- 347 T+ + + ++ + S G + +V+ I + Sbjct: 484 PTRELASQIYKECQPF-LKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLT 542 Query: 348 ---GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 G + R + E + + +K + Q + SAT + Sbjct: 543 ANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKVLFSATFPKTMESLA 602 Query: 405 GGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI-----RQRAAINERVLVT 452 +V + G +D +EVR T+ LL + + + R L+ Sbjct: 603 RRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTLIF 662 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + A+DL L + G LH + V+R E I++ + G+ ++V ++ GLD+ Sbjct: 663 VDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDV 722 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 E+ LV DA + GR R G I + + I Sbjct: 723 KELKLVINYDAPNH-----MEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRALEA 777 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + ++ K+ A + Sbjct: 778 SKAFI--PDDLKKMSDSFLGKIKSGKARAAGSGYS 810 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 55/459 (11%), Positives = 112/459 (24%), Gaps = 69/459 (15%) Query: 138 VVASVSAIYGLGDPDLYLKMMLHLTVGMIID------QRAILRRLAELQYARNDQAFQRG 191 V+A A+ + L + +LR L +L Y Sbjct: 7 VIALAFALNRK-PVSAPTARIAVLARNTSMSFASLGLIDPLLRNLQDLNYQ--------- 56 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 ++V+ + + F + V Sbjct: 57 ----------------TPTPVQVKAIPAVLGGKDVM-AGAQTGTGKTAGFALPLLQRLVQ 99 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + + R + + G + Sbjct: 100 QGPAVSSNRARVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAA----YGGVSINPQMMKL 155 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D + + + + + M Sbjct: 156 RKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDL-----------------G 198 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIE 424 + QT+ SAT + + + V + + Sbjct: 199 FARELNAVFAALPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVV 258 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + D + + + + LV T+ E L L+E G V +H D Sbjct: 259 TVDKRNKPDLFMHLVAE--NNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPA 316 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R+ + + GE +LV ++ GLD+ ++ LV +D + + IGR R Sbjct: 317 RLRALERFKTGEVQMLVATDVAARGLDIDDLPLVINVDLPI-----VAQDYVHRIGRTGR 371 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 +G A+ AI + ++++ Sbjct: 372 AGASGVAVSLVCADEAPQLAAIEALIGQTLRREEEPGFE 410 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 85/297 (28%), Gaps = 35/297 (11%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + G + P L D + L + + V + Sbjct: 140 AAAARRPLRIATIYGGRAYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLD 199 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M + QT+ SAT + + Sbjct: 200 EADEMLDLGFLPDVETLLA-----------------AVPAVRQTMLFSATMPGPVVAMAR 242 Query: 406 GDVVDQVVRPTGLLD----------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + ++ + + + + +A R ++ T T Sbjct: 243 RYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARAL--QAEGRGRTIIFTRT 300 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A + + L G LH D+ R + +R R G+ D+LV ++ G+D+ +V Sbjct: 301 KRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVATDVAARGIDVDDV 360 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 + V A E++ + +GR R G A+ D I + Sbjct: 361 THVFNFQAP-----EDEKTYVHRVGRTGRAGNKGVAVTLVDWEDMPRWSLIDKALGL 412 >UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoeba RepID=C4LXN8_ENTHI Length = 722 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 62/457 (13%), Positives = 137/457 (29%), Gaps = 42/457 (9%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + V + + + + + + + E +N Sbjct: 173 VIMSGYDAIVCAKTGSGKTLAYTIPLIKHVMAQRPLSKGEGPIGIVFAPIRELAEQINTE 232 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG----GMYRGDRA 356 G R ++ G L +VV I + + R Sbjct: 233 INKFGKYLNIRSVAVF-GGTGISNQIGALKRGTEIVVCTPGRMIDILVTNNGRITNLRRV 291 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP- 415 L E + + E Q + SAT + + + + Sbjct: 292 TFVVLDEADRMFDMGFGPQIKRIIEGIRPDKQIVMFSATFPISVEQHAREFLKKPIEIIC 351 Query: 416 ------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + ++ I+EV +++ L+S + ++ R+++ T T++ ++L + L E Sbjct: 352 GGRSQVSNTIEQIVEVIETKKKIERLISIVLEQNNKGGRIIIFTETQKNCDELYQNLMER 411 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFD-VLVGINLLREGLDMPEVSLVAILDADKEGF 528 LH ID ++R I++ + G +L+ +L GLD+ + LV D Sbjct: 412 NINCLLLHGGIDQIDRQNTIQEFKSGIGRTILITTSLCARGLDVKGLELVINYDCPNH-- 469 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ----------- 576 + +GR R GKAI + K ++ I + Sbjct: 470 ---LEDYVHRVGRTGRAGKRGKAITFITKEEERYSEDIVKALTLSGGSISKELNDMYEEW 526 Query: 577 --------KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 + G G + + + +N + ++ M Sbjct: 527 KTKKLFLETKEGKKGYGGNGFKFDIKEEITTMENKIGGYMEEDIGGGIKLKERFEEKKMK 586 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + I + + M+Q A + +I ++ ++ Sbjct: 587 EEIKESNIPKEKQEMVQKALQM----IERINKRMTKI 619 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats. Identities = 82/650 (12%), Positives = 176/650 (27%), Gaps = 57/650 (8%) Query: 33 AHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAPNKTLAAQLYGEMKEFF-PENAVEYFV 90 + + G GS I ++A R + L P+ A L + +A + Sbjct: 84 GTRHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEA 143 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD-VVVVASVSAIYGLG 149 + + ++ D + + Q RL+ + V+V ++A+ Sbjct: 144 AGSTTFGRVLLYLPNEASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKV 203 Query: 150 -DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 D + + +D+ A+ RL Y R+ GTF VRG ++D++ S Sbjct: 204 VSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVWAP-SA 262 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R++ + + V + F+P + V+ + I P + + +A + ++ Sbjct: 263 ELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACD 322 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + ++ + G E Y Y Sbjct: 323 VIDFPS-------------TKARALVDDVASGRAFFGAEGYLPAFIDLASFTS------Y 363 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF------ 382 LP D L+++++ + A + ++ + Sbjct: 364 LPDDALILLEDPSSVTAAVRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGARAV 423 Query: 383 ----------EALAPQTIYVSATPGNYELEKSGGDVVDQVV-RPTGLLDPIIEVRPVATQ 431 A ++ + D D T R Sbjct: 424 LALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARAS-----RGKHGA 478 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +D L+ + RVL+ + E L L RV+ D Sbjct: 479 LDPLVRRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDPAFFDGSSSA 538 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 LV L G+ P L + + + G R+ A + Sbjct: 539 --SPRDTALVVTGSLARGVIAPAEGLALVTEEEIFGARAHRRA-------ARAAASSTKP 589 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 +Y ++ + G + Sbjct: 590 SQAFLEDLRNLGVGDHVVHVEHGIGRYLGLVHKQVGSTTVDLIAVEYAGGDKLYLPVYRL 649 Query: 612 GKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + + P + + + +E + + A L A + Sbjct: 650 NQIQKFSGGEGTPKLDRLGGQTFAKTKARVEKSVRKMADELLRLYAERRA 699 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 72/486 (14%), Positives = 139/486 (28%), Gaps = 53/486 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQA 259 + P + D A +E P + ++ + + P V + Sbjct: 705 VPPPDDDYRAFEATFPFDE-------TPDQARAITEVTADLESGRPMDRLVCGDVGFGKT 757 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 I+ A Q M + + + + Sbjct: 758 EVAIRAAFRAANAGRQVAVLCPTTVLAQQHYLSFRSRMASYPIEVRVMSRFQSKQEQDEV 817 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L + VV +H + + R + +G Sbjct: 818 S------RGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTHKER-------- 863 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SE 438 + + +SATP L+ + + D + T +D V + +L Sbjct: 864 IKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAVLREA 923 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGE 496 + + +V + L E R H + + + D G Sbjct: 924 VLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDFVEGR 983 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 +DVL ++ GLD+P + + I AD G + L Q GR R+ Y Sbjct: 984 YDVLCATAIIESGLDIPRANTILIDRADMFGLSQ----LYQLRGRVGRSKER---AYCYL 1036 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 I P A+ + R R + + + E G G +D+ G + ++ Sbjct: 1037 IVPPP-NAMTDEARARIEALERHTELG---SGFQIASLDLELRGSGDLLGAEQSGTVAQ- 1091 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNLEFEEAAQIRDQ-------LHQLRE 667 V ++ + L + +HEL G + L F+ A + ++ L + Sbjct: 1092 ------VGFELFCQMLDEAVHELRGEPVVHDVDTELSFDADALLPEEYISDVGVRLSLYK 1145 Query: 668 LFIAAS 673 A+ Sbjct: 1146 RLAGAA 1151 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 59/385 (15%), Positives = 116/385 (30%), Gaps = 18/385 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L RK + + L + + +++ +L + N ++ G+ + Sbjct: 59 MLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAK--NMGINIAVLVGGKDLESQ 116 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +V+ + + L E L + Sbjct: 117 QKILKEGVDIVIATPGRVLEHVDKGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPK 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 QT+ SAT + + S + T + ++ + LL+ I Sbjct: 177 RHQTLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYI 236 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +VLV T TK A+ L L++ G + +H D R++ + + + G+ V Sbjct: 237 IGSRNF-RQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKV 295 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ E+ V + + +GR R G AI D Sbjct: 296 LVATDIASRGLDIEELPFVINYELPSI-----PEDYVHRVGRTGRAGRDGMAISLIDIYE 350 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 K I + + G P +++ ++ K + Sbjct: 351 KFDIKDIEKLIGMK---IPQEIIAGFEPDPTIRRLDQDELKLKSEHKKVEVKHERKPRKK 407 Query: 619 EPDNVPMDMSPKALQQKIHELEGLM 643 E + K + K + Sbjct: 408 EDGSKKSANYKKPVTTKKRKTSKRD 432 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 56/424 (13%), Positives = 116/424 (27%), Gaps = 17/424 (4%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 +D + IP A + + E + Sbjct: 2 KYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKAL 61 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ +NE + + + G + + +++ I Sbjct: 62 ILAPTRELAIQINETFEAMNPQVNLKS-AVIFGGVRQGSQVTKINRGIDVLIATPGRLID 120 Query: 346 Q-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 G+ L E L K F QT+ SAT + Sbjct: 121 LYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLV 180 Query: 405 GGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + D + ++ + + L+ + +V TKR Sbjct: 181 SDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLL--ENPQIYNAIVFVRTKR 238 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + L + L + +H D R+ + + + + VLV ++ G+D+ E++ Sbjct: 239 NVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTH 298 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + + IGR AR +G+AI + ++ K I + + Sbjct: 299 VINFDLP-----DQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVV 353 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 KK ++ KAK + + + + + K + Sbjct: 354 DNPYYPMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQGQKKLSVRTNNIKKNSKTKRSNF 413 Query: 637 HELE 640 Sbjct: 414 KRRR 417 >UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Agaricomycotina RepID=PRP28_CRYNE Length = 738 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 58/380 (15%), Positives = 105/380 (27%), Gaps = 18/380 (4%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F I + L L E +R + Sbjct: 364 GKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCV 423 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + ++ P L D + L++ +V + + M Sbjct: 424 SIV-GGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGF 482 Query: 356 ARKETLVE----YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + F P E T SAT + ++ Sbjct: 483 EVDLNFILDSMPATFVKPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKP 542 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 G ++ +E + L EI + + ++V K+ A+ + + Sbjct: 543 ATVVIGNAGEAVDTVEQRVEFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVK 602 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 Y+++ G LHS +R ++ LR GE VLV +L G+D+P+VSLV Sbjct: 603 YVQQAGMSGVTLHSGKSQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQM- 661 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + IGR R G AI + + + + + + E Sbjct: 662 ----SDTIEKYVHRIGRTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELAR 717 Query: 584 ITPQGLNKKVVDILALGQNI 603 G Sbjct: 718 HEAARTRVTREMKRKRGDEE 737 >UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 Tax=Alteromonadales RepID=Q480Z7_COLP3 Length = 399 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 59/413 (14%), Positives = 114/413 (27%), Gaps = 42/413 (10%) Query: 193 FRVRGEVIDIFPA--ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F + +ID ++ E + L F++ + Sbjct: 7 FSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIA-QTGTGKTAAFSLPIINKFG 65 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + I L L + + + + G + S Sbjct: 66 RNKIDIKAKSTRS---LILTPTRELASQIMQNIDDYSDGLG-LKTKVVYGGVGRQAQVDS 121 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 L P L D + + + + M Sbjct: 122 IELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMG---------------- 165 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPII 423 + QT+ SAT + + D L++ + Sbjct: 166 -FFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSV 224 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +V L + + + A E+VL+ TK A+ + + LE+ LHS Sbjct: 225 YHLDKSNKVPLLFNILTK--ADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQA 282 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R E +++ + VLV ++ G+D+ ++LV + R+ I IGR A Sbjct: 283 VREEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLP-----EDPRNYIHRIGRTA 337 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 R +G AI + + I + + E + + D Sbjct: 338 RAGKSGMAISFAVENDIRQLTNIENSIG---QVIPVVTEQPFHKEFSKAPIQD 387 >UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=Viridiplantae RepID=RH42_ARATH Length = 1166 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 52/378 (13%), Positives = 112/378 (29%), Gaps = 21/378 (5%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + + + + L + + T+ ++ ++ Sbjct: 562 IIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSD 621 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRA 356 R + G L +VV I + G + R Sbjct: 622 IRKFSKPLGIRCV-PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRV 680 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + E + + + + QT+ SAT + + V Sbjct: 681 TFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQV 740 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + ++EVRP + + LL + + + ++LV ++ + L + + Sbjct: 741 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKG-KILVFVQSQEKCDALYRDMIKS 799 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 LH D +R I D + ++L+ ++ GLD+ E+ LV DA Sbjct: 800 SYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNH--- 856 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + +GR R G A+ + + A + + E+ ++ G Sbjct: 857 --YEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQ--PVPDDLKALADG 912 Query: 589 LNKKVVDILALGQNIAKT 606 KV + Sbjct: 913 FMVKVKQGIEQAHGTGYG 930 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 119/373 (31%), Gaps = 25/373 (6%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + + L++ ++ + + + G + D L A +VV Sbjct: 131 KPQALVMCPTRELALQVSKDISTAASV--RGARVLTVYGGVGYESQIDALKAGVDVVVGT 188 Query: 340 SHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + R L E L + QT+ SAT Sbjct: 189 PGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPA 248 Query: 399 YELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLV 451 + + + V T P + D + I + N E+V++ Sbjct: 249 PIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVII 308 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TKR + L++ L++ G + R +H D+ V R + ++ R G+ +LV ++ G+D Sbjct: 309 FCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAARGID 368 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + VS V + E++ + IGR R G A+ D + K I + Sbjct: 369 VTGVSHVINHECP-----EDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKALN 423 Query: 571 RREKQQKYN--------EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + I P+ +++D+ + + + + Sbjct: 424 LELSEPVETYSTSPHLYTDLDI-PEDAQGQIIDLEKAASEKKRRQHRHGHDGSHHEKATR 482 Query: 623 VPMDMSPKALQQK 635 + K + Sbjct: 483 RRSRDASKDGDKA 495 >UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Proteobacteria RepID=A4SWL3_POLSQ Length = 500 Score = 205 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 97/335 (28%), Gaps = 16/335 (4%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + + + + T+ + + ++ G P Sbjct: 79 NQLIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYG 138 Query: 324 TLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L LLVV + R D ++ + E L + ++ Sbjct: 139 KQIQAL-KGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKR 197 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDL 435 A QT+ SAT + + D ++ + + L Sbjct: 198 CAGRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKL 257 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L I A ++ + +V T+ +E + + L +G LH + RM + LR G Sbjct: 258 LEHILADATLD-QAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKG 316 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 +LV ++ G+D+P +S V G IGR R G AI Sbjct: 317 HTKILVATDVAARGIDVPRISHVIN-----FGLPMKPEDYTHRIGRTGRAGRNGVAITLV 371 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + + I ++ Sbjct: 372 EHRDRAKIRNIERFTQQDIVASVIAGLEPQAKPSF 406 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 205 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 89/658 (13%), Positives = 203/658 (30%), Gaps = 87/658 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 Q A + L + G + + + + + + LQ+ +V+ PN+ Sbjct: 2 KKIDEILKQNPAFKTLLK----GEGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A LY ++ +++ + P +++ + + + + R+ A Sbjct: 56 EANLLYQQISLINEKDS--------------LFFPVDESYRIEALASSPELLGQRIDALY 101 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + +++ A+ L+L L+L GM ID + + L + Y + Sbjct: 102 QLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q F RG VID+F + D LR+E FD+E++ + ++ + + + + TI P + Sbjct: 162 DQPFYFSKRGGVIDVFSIQYD-NPLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + + +I + L + ++ E L Q +++ + Sbjct: 221 DILYDEQEVPAVLSKIND---------LRDRQIEELDELYQEDYLSKVSIDQENLRNHDT 271 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +++ + + +L DYL L++ +H + + L G Sbjct: 272 SFTMYGYFNLFNQT-ASLLDYL-DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKT 329 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + N E A L + + II Sbjct: 330 IKG--LNLFRDLYEVIDRKSVNFKPFAQSDKDVLFNARAIM-----INNDDEAMIINQIR 382 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ ++ + + L L + E L Sbjct: 383 AYLKLSKVVVALDDDHQL---------------KLMTELFDRHEMAYTLIG--------- 418 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 I ++ G + +N + G+++ + +V I + ++ Sbjct: 419 IKDEIYPGLN---IAVNKIGFGIELVDEKIVIISANELFKTRNIKKP-----------KY 464 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K +Y + QG +K + + G + Sbjct: 465 FKYKNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVAYAGDDTLYIP 524 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + R S + KI++L G Q + + I D+L ++ Sbjct: 525 VEQFKMIRK---------YSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIADKLIEI 573 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 68/470 (14%), Positives = 142/470 (30%), Gaps = 51/470 (10%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +++E E + V I P + + ++ A Sbjct: 591 IQLEF---ERSFGYELTVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKA 647 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 Q + + + L+ + + L Sbjct: 648 ILGNKQVAFLCPTTILSMQHYKTMIARFKDFPV------KIALLNRFTSTKEKKQILSDL 701 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + ++ +H + + + +G + + Sbjct: 702 KLGNIDLLVGTHRILSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTI--------DV 753 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINER 448 + ++ATP L+ S + T + V + + L+ +I + A + + Sbjct: 754 LTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERELARDGQ 813 Query: 449 VLVTTLTKRMAEDLTEY--LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 V ++ L G RV H +D E +++ EF+VLV ++ Sbjct: 814 VFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTII 873 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + + DADK G + L Q GR R+ G Y + + K + Sbjct: 874 ETGIDIPNANTIIVEDADKFGLSQ----LYQIKGRVGRSNRG---AYAYLL-YNPTKVLN 925 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R K K E G G + D+ G +I G D++ Sbjct: 926 EEASKRLKAIKEFTELG---SGYKIAMRDLAIRGSGDILGGTQSGF--------IDSIGF 974 Query: 626 DMSPKALQQKI-HELEGLMMQHAQNLE--------FEEAAQIRDQLHQLR 666 +M K LQ I ++ ++ + ++ + + + +L Sbjct: 975 EMYMKILQDAINEKMGKEDVEAEKEIKSVNVKVDGYIPHDYVSSDIEKLE 1024 >UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=3 Tax=Magnoliophyta RepID=B9SW84_RICCO Length = 1173 Score = 205 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 62/442 (14%), Positives = 129/442 (29%), Gaps = 32/442 (7%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + + + + L + L + T+ ++ ++ Sbjct: 560 IIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPLVEAGDGPIGLIMAPTRELVQQIHSD 619 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRA 356 R + G L +VV I + G + R Sbjct: 620 IKKFAKVLGIRCV-PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 678 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + E + + + + QT+ SAT + + V Sbjct: 679 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 738 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + ++EVRP + + LL + + ++L+ ++ + L L +H Sbjct: 739 GGRSVVNKDITQLVEVRPESERFLRLLELLGEWNEKG-KILIFVQSQDKCDALFRDLLKH 797 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH D +R I D + ++L+ ++ GLD+ E+ LV D Sbjct: 798 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELDLVVNFDVPNH--- 854 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + +GR R G AI + + A + + E+ E+ G Sbjct: 855 --YEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQ--VVPEDLKALADG 910 Query: 589 LNKKVVDILALGQN--------IAKTKAKGRGKSRPIVEPDNVPMDMSP---KALQQKIH 637 KV L + + + + + + + I Sbjct: 911 FMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKKAQAKEYGFEEDKSDSEDEDEGIR 970 Query: 638 ELEGLMMQHAQNLEFEEAAQIR 659 + G + +H L + A Sbjct: 971 KAGGDISRHNAALAQQLVAIAA 992 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats. Identities = 57/411 (13%), Positives = 124/411 (30%), Gaps = 33/411 (8%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF-LSGRGPGEPPP 323 + L L + + ++L ++ G G + S P Sbjct: 72 QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVVVGTPG 131 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + + L + + + + M + Sbjct: 132 RIQELARKRALHLGGVRTLVLDEADRMLDMGFE-----------------EPIREIASRC 174 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLS 437 Q++ SAT + + + D + D E+ + + Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAG 234 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + E +V T++ +++ L+E G LH D++ +R E++ Sbjct: 235 LLLRF--TPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSC 292 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +VLV ++ GLD+ ++S V + + IGR AR +G A+ Sbjct: 293 NVLVASDVAARGLDVEDLSAVVNYELPT-----DTETYRHRIGRTARAGKHGLALSLVAP 347 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + A+A+ + + K + Q + + G K +A G Sbjct: 348 RETARAQALEAEQGQPLKWSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRA-GDILGAL 406 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 E + A+ + Q A+ L A +I+ + ++ + Sbjct: 407 TGEAGLSGAAIGKIAIYPTRSYVAIARAQVAKALAHLHAGKIKGRRFRVSK 457 >UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=Deltaproteobacteria RepID=B8DQS6_DESVM Length = 990 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 54/368 (14%), Positives = 112/368 (30%), Gaps = 22/368 (5%) Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ L + L++ E E ++ G D L LVV Sbjct: 177 AVQALILVPTRELALQV--EYEARVLFEGTGLNVAAVYGGVGYGKQMDALRDGAHLVVGT 234 Query: 340 SHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP-QTIYVSATPG 397 + + DR R E L + + + SAT Sbjct: 235 PGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRISAYLFSATYP 294 Query: 398 NYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + L +G + + + + L+ I + + Sbjct: 295 PHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRII--ESENPTAAI 352 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TK +T L+ G L +D+ +R +++ LR G LV ++ G+ Sbjct: 353 IFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVATDVAARGI 412 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+P++S V + + S I GR R + G I D I + I + Sbjct: 413 DIPDLSHVILYEPP-----EDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIAKHY 467 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILAL---GQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + + ++ + ++ + A + + + + + D+ + Sbjct: 468 KIDIQHRPTPDDESVARIAGDRLTALLEARLRARTGLERERQQRFAPLARALAGDDEQLA 527 Query: 627 MSPKALQQ 634 + L Q Sbjct: 528 LLAMLLDQ 535 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 105/330 (31%), Gaps = 14/330 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+NN +E +T + +++ +E+ G+ Sbjct: 70 TGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTK--TKTVCVYGGQ 127 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET-LVEYGFRLPSALDNRPLKF 379 +++ + +++ + + K L E L + + Sbjct: 128 SVKKQCEFIKKNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEI 187 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLL 436 ++ Q + SAT + + + + + + I R + Sbjct: 188 FDYLPSEAQILLFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERS 247 Query: 437 SEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 I E+ +V T TK+ A++L ++L + LH D+D +R I + Sbjct: 248 EAIMHLLDTQAPEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKK 307 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 + DVLV ++ GLD+ VS V + S I IGR R G AI Sbjct: 308 NDADVLVATDVASRGLDISGVSHVFNYHLPL-----NTESYIHRIGRTGRAGKKGMAITL 362 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + + + + + Sbjct: 363 VTPLEYKELLRMQKEIDSEIELFEIPTINE 392 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 61/388 (15%), Positives = 122/388 (31%), Gaps = 22/388 (5%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 + ++ F +E++ + T P + + ++ + A Sbjct: 38 ETPPEMDSF-DELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTA 96 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG----PGEPPPT 324 A +LE LE+ R Q + E +R + G+ Sbjct: 97 AFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNR 156 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L LVV + R + L E L + + Sbjct: 157 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKC 216 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLL 436 QT+ +SAT + + + VV ++ +V L Sbjct: 217 PRNRQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLE 276 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLE-EHGERVRYLHSDIDTVERMEIIRDLRLG 495 S +++ E+ ++ TKR + L L E+G +H D+ ER +++ LR G Sbjct: 277 SLLKREK--PEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDG 334 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 LV +++ G+D+ +S + D + + +GR R +G A + Sbjct: 335 NLKFLVATDVVGRGIDISTISHIVNFDVP-----QDCDDYVHRVGRTGRMGRDGVAYTFV 389 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEH 582 + +I + + + K + Sbjct: 390 VPGEGDILTSIEQRINKLLIRDKMDGFE 417 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 99/338 (29%), Gaps = 12/338 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L+ + + + T+ + E F++ G+ Sbjct: 55 TGKTAAFGLPLLSRLDADLKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQ 114 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + I + D + L E L Sbjct: 115 SYTPQLRDLARGPQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWI 174 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLL 436 Q + SAT + + + D + P I + Sbjct: 175 LNQIPDQTQMAFFSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKT 234 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + A + ++V T+ L E+L G + L+ D+ +R I+ L+ Sbjct: 235 VGLERIAEVVDYDAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKN 294 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G ++L+ +++ GLD+P ++ V D S + IGR R G+AIL+ Sbjct: 295 GRINILIATDVVARGLDVPRITHVINYDLPH-----DSESYVHRIGRTGRAGREGEAILF 349 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + + + + + + Sbjct: 350 ASHREVRSLSRLERITEGKIEVFDMPTAEQLGQARIER 387 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/405 (17%), Positives = 129/405 (31%), Gaps = 30/405 (7%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + +K + L + L++ E+ + + + G P D L A Sbjct: 124 IDAASKGAQALILAPTRELALQVSREIAQLAKPKGL--HIEPIYGGAPIKPQMDALAAGA 181 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--LAPQTI 390 +V + + R L E L + E QT+ Sbjct: 182 QVVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTV 241 Query: 391 YVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + D +D V + DLL +R A Sbjct: 242 LFSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLR--A 299 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + ++ T+ + ++L+ G + SD+ +R +++ +R D LV Sbjct: 300 ESPDSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVAT 359 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ G+D+ ++S V F S + GR R +G AI Sbjct: 360 DVAARGIDISDLSHVINY-----TFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSF 414 Query: 563 KAIGETERRREKQ--QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + R ++ NEE GI +G + V L + A R +R I + Sbjct: 415 YYLKLIYKIRPEERDLPTNEEMGILDEGARFERVAALVSEE----PGADSRALARRIWQS 470 Query: 621 DNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 D + L E A+N + EA + D+ Sbjct: 471 DEGERIFGALVQRVLADAPSERSKRSRPKAENTQRSEA-RRSDER 514 >UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DES1_TRIVA Length = 640 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 68/398 (17%), Positives = 132/398 (33%), Gaps = 24/398 (6%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 L+ + + E + + + G + +++ Sbjct: 176 AVILSPTRELAYQTHIECQKIFSLMDKKS--ACLVGGNDIENQLRAIKNGSNVIIATPGR 233 Query: 343 TIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 I + + + + E + + ++ E QT+ SAT + Sbjct: 234 FIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQTLMFSATFPHTVE 293 Query: 402 EKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + + G ++ I V + + LL + + LV T Sbjct: 294 RIARKLLQNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQG-QALVFTN 352 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+ AEDL L + G V LH +D+ +R I+ D R G F VLV ++ G+D+ Sbjct: 353 TQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGARGIDIAS 412 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 + V DA E + +GR R G A + + A I ++ Sbjct: 413 IICVINYDAP-----DHEADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAGIKNAMKK-- 465 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIA--KTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + ++ QG+ ++ G K +AK R D + Sbjct: 466 SGCEIPKDLEDLCQGVKAPGLNGFWRGSGFKFDKEEAKSLLALRKAQNDDPLQQKEEEDQ 525 Query: 632 LQQKIHEL--EGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 +++ E+ + +++ NL EA I D + R Sbjct: 526 CEEEAKEIIEDKSVLKVNDNLYIGEAN-INDYTKKARA 562 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 51/338 (15%), Positives = 91/338 (26%), Gaps = 21/338 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + T+ + E G P Sbjct: 67 LQRIATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRI-QTGTILGGMPYRQQL 125 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L L+V + + L E L Sbjct: 126 EMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPA 185 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-------TQVDDLLSE 438 QT+ +AT + D V + LL Sbjct: 186 ERQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLET 245 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +V TK A+ L + L E G + LH D+ +R +++ LR G + Sbjct: 246 LLGGEEFG-KGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRIN 304 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 V+V ++ G+D+ +++ V D + + IGR R +G + ++ Sbjct: 305 VIVATDVAARGIDIADLTHVINFDLP-----KQAEDYVHRIGRTGRAGASGVSYSLFTRM 359 Query: 558 TPSMAKAIGETERRR-----EKQQKYNEEHGITPQGLN 590 +AI + + E P G N Sbjct: 360 EWRQVRAIEAYTNKAADMHVLPGLEPMPEPERRPGGFN 397 >UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVN9_DYAFD Length = 481 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 99/322 (30%), Gaps = 28/322 (8%) Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + + P L +L + D H+ + + M Sbjct: 110 GPEWDQQKKALTQGADIIIATPGRLIAHLQLGYVHFRDLRHLVLDEADRMLD-------- 161 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP--TGL 418 LK + QT+ SAT + + + + Sbjct: 162 ---------MGFLGDILKIMSYLPNERQTLMFSATMPPKIGDLAKRILKEPEEIRLAVSR 212 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 I+ + + + L + N +++ T K E + L + G + Sbjct: 213 PADRIDQQFYLAKDEQKLPLLMHLLKGVENISMVLFTSRKSNVEPIVRALRKLGLGAHGI 272 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 SD + ER ++RD + +F +LV ++L G+D+ +S V D R + Sbjct: 273 SSDSEQGEREIVLRDFKNRQFPILVATDVLSRGIDIDNLSHVVNYDVP-----RDPEDYV 327 Query: 537 QTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG-LNKKVV 594 IGR AR G A+ + ++ I + +++ E G+ + Sbjct: 328 HRIGRTARAESKGTAMTFINEQDQKYVLKIERLFEKELEKKSLTAELGLGEAPLFEPPRL 387 Query: 595 DILALGQNIAKTKAKGRGKSRP 616 + K A G R Sbjct: 388 RSGGRNKKNRKKPAPGAPSGRK 409 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 52/435 (11%), Positives = 107/435 (24%), Gaps = 39/435 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 EV + F + + R + + + Sbjct: 57 EVLQGKDIMASAQTGTGKTAAFILP-----IIELLRAEDKPKRYQVHSLVLTPTRELAAQ 111 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + + G + P L D + + + Sbjct: 112 VEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQGGVDILVATPGRLLDLINQKMIRFDNL 171 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M K E+ Q + SAT Sbjct: 172 KVLVLDEADRMLDM-----------------GFIRDIKKVIEYLPKNRQNMMFSATFSTP 214 Query: 400 ELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTL 454 + + G + D V + + IE + + + N+ +VLV Sbjct: 215 IKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKTNKWKQVLVFAR 274 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK A+ + + L R +H + R + + G+ +LV ++ G+D+ + Sbjct: 275 TKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVATDIAARGIDIHQ 334 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 + V LD + IGR R G AI + KAI + Sbjct: 335 LPYVINLDLPN-----VAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIEKFIGNPL 389 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + L G + ++ + + Sbjct: 390 PKVDVVGFEQ------KILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQQRRSDWRK 443 Query: 634 QKIHELEGLMMQHAQ 648 +G + Sbjct: 444 SSNRSTQGERRTRQR 458 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 97/671 (14%), Positives = 196/671 (29%), Gaps = 101/671 (15%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 I R+ L+ G L ++ S + F +A RP +++ + A + Sbjct: 10 LLTSREIHRIWNELDQGKD--CTLNISQSARPFIVAACACAQARPILLVVSGEDAADRAA 67 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 + + + V + P D S + + R A + + + Sbjct: 68 RILAGWLGPDVVFRY-------------PDRADLPWSDKSASAEVCGTRAEALFHLAQPQ 114 Query: 135 DVVVVASVSAIYGLGDPD--LYLKMMLHLTVGMIIDQRAILRRLAELQY---ARNDQAFQ 189 VVVAS A+ P + + + +G +D A+ R+L Y + + Sbjct: 115 RCVVVASARALLRRLPPKTSSFAQQQ-KICIGDELDIYALARQLVLWGYVSTTVVKEVRE 173 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F V G+ +D+F + +R+ F +EV+ + P TGQ +S+ + Y Sbjct: 174 PGYFCVHGDSVDVFSP-CEQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAAREL 232 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 E I A ++ ++ T+ L+ + E Y + ++ Y Sbjct: 233 ELSPETIQCAKNKLYDKAQEDLD-----------------TERVLDQIEESVYTNELDAY 275 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 +L ++ DY+ L+V+ E Y L+ Sbjct: 276 LPYLYP-----STASVIDYMHPSALVVLAEPRALFDDCQRAYDE-------LMHASTEKR 323 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 +LD E + Q + +S + + + E +A Sbjct: 324 VSLDGLYTSPVELDFGKQQRLSLS--------SLARQGMR-------ASNHVVTEQCDIA 368 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERME 487 ++ IR+ A N V+ + + L + H+ +R Sbjct: 369 GSASKMIGRIRELLANNSAVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRAP 428 Query: 488 IIRDLRLG----------EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 V+ + + G+ +P L +D L +++ Q Sbjct: 429 EHESEHNQDLEAQNLPLPRNKVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQ 488 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 I + + K + + G + Sbjct: 489 KIDPTK-------LTF-------PFKPGDYVVHATHGIALFQKIVQQEVAGKKRDY---- 530 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 T A+ P + D + + P ++ L A + A + Sbjct: 531 -----FLLTYAQDDKLYVPFEQVDKITRYIGPDGSTPRLTRLNSADWSRACTRARKSAQK 585 Query: 658 IRDQLHQLREL 668 + L L Sbjct: 586 MAFDLVDLYTR 596 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 63/441 (14%), Positives = 124/441 (28%), Gaps = 39/441 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + ++ + Q + E Sbjct: 635 KADMQSATPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILAQQHFETFYER 694 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 E R LS + + V+ +H + Sbjct: 695 FTPF------EVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLI 748 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + + +SATP ++ + V D + + Sbjct: 749 IIDEE--------QRFGVQHKEQLKNIREQVDVLTLSATPIPRTMQMAMSGVRDMSLILS 800 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 V DL+ IR A +V + + +D E + RV Sbjct: 801 APAGRKPVRVHVGEWDSDLISDAIRLELARKGQVYYVSNRVKTIDDALERVHACAPEARV 860 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + E++ E DVLV ++ G+D P + + I D+ + G + Sbjct: 861 GVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQ--- 917 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R + T + E RRR + ++E G G+ + Sbjct: 918 -LYQLKGRVGRGRVQAYAYFMFPPTEP----LTEEARRRLEAIYEHQELG---SGMRIAM 969 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM--QHAQNLE 651 D+ G + S V D+ + L + E +G A+ + Sbjct: 970 KDLEIRGAGSLMGAEQHGNLS-------GVGFDLFTQMLSDAVREAKGETQHTDLAEVVI 1022 Query: 652 FEEAAQI--RDQLHQLRELFI 670 A D + ++ + + Sbjct: 1023 NIPADFYFSEDYVPEIDKRVL 1043 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 50/446 (11%), Positives = 121/446 (27%), Gaps = 49/446 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + P + I + + + + F + ++ Sbjct: 21 GFKEPSPIQEQAIPVLLSQDHDIIG-------QAQTGTGKTAAFGLPIVQKIEPGLKKPQ 73 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + ELA ++ EE + + + + G + + Sbjct: 74 ALILCPTRELAI---------QVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVDL 124 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P ++ L + ++ + + M Sbjct: 125 VVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNM-----------------GFVEDVE 167 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVAT 430 K + + SAT + + + + + +D ++ Sbjct: 168 KVLKASPDDRTVLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPEN 227 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L + ++ TK E ++ L G Y+H D+ R +++ Sbjct: 228 KFAALCRIMDLEKDFYG--IIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLK 285 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R +L+ ++ G+D+ ++S + S + IGR R G Sbjct: 286 RFRNRNISLLIATDVAARGIDVTDLSHIVN-----FSLPEQFESYVHRIGRTGRAGKTGT 340 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-ALGQNIAKTKA 608 AI S I + + +++K + + K ++ N + Sbjct: 341 AITLITPKERSKMSFIEKKTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEEL 400 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + DN P+D+ L + Sbjct: 401 APIKEVAAQLLEDNSPVDIITALLSK 426 >UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID=Q8I0W7_PLAF7 Length = 1123 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 98/356 (27%), Gaps = 22/356 (6%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + ++ + ++ L L E + Sbjct: 747 GKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCS-CRT 805 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + + + P L D L ++ ++V + + M Sbjct: 806 VAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGF 865 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEA-------LAPQTIYVSATPGNYELEKSGGDV 408 + + + E L T SAT S + Sbjct: 866 EDTVHYILDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYL 925 Query: 409 VDQVVRPTGLL---DPIIEVRPV---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 G IE + + L EI + ++V K++A+ + Sbjct: 926 RAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPP--IIVFVNQKKVADII 983 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++ + + + LH R + + + EFD+LV ++ G+D+ V LV D Sbjct: 984 SKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFD 1043 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + S IGR R G AI + + + + + Sbjct: 1044 MP-----KDIESYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVP 1094 >UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4RW46_OSTLU Length = 654 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 119/407 (29%), Gaps = 51/407 (12%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMN----------------ELGYCSGIENYSRFLSG 315 + L + ++ G + Sbjct: 154 NGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPYREQEMGLRGGC 213 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P + D+L L++ + + M L+ Sbjct: 214 DVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELIL------------ 261 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV----------DQVVRPTGLLDPIIEV 425 + QT+ SAT + + + + DQ + +G + ++ Sbjct: 262 ------KSSGDVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLP 315 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVE 484 + +VD + IR +A RV+V TKR +L + L++ + + LH D+ + Sbjct: 316 CQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQ 375 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ R +F VLV ++ GLD+ V LV + + + I GR R Sbjct: 376 REVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPP-----KDAETYIHRSGRTGR 430 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G ++ + I + + + + I + + Sbjct: 431 AGATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGA 490 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 AK + D+ + L I +L G ++L Sbjct: 491 AKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGELRQRSL 537 >UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0CUL6_PARTE Length = 604 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 112/378 (29%), Gaps = 50/378 (13%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN-NKLLEEQRLT 287 LTG + I + ++ P + A + E ++ ++ + Sbjct: 168 ALTGHDLIGIAQTGSGKTLAFLLPAIVHILAQARSHDPKCLILAPTRELTLQIYDQFQKF 227 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 G I+ + P L D L + S + + + Sbjct: 228 SVGSQLYAACLYGGQDRYIQKSQLRKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEA 287 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + + K + QT+ SAT + + Sbjct: 288 DRMLD-----------------MGFEPQIRKIVDQIRPQRQTMLFSATWPKEVQKLALDF 330 Query: 408 VV-DQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI----------------RQR 442 + V G ++ I+ V + I + Sbjct: 331 CKQEPVHIQIGNVELTSNRMIKQIVYVMKAIDKNQRYNQTIDGANIYTRSSISLLLYLLK 390 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++++L+ TK+ + L + L+ G R LH D ER ++ R G L+ Sbjct: 391 DIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQTERDYVMSHFRNGRSTALIA 450 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG-DKITPS 560 ++ GLD+ ++ +V D + + IGR R G++I + Sbjct: 451 TDVASRGLDIKDIEVVVNYDMP-----KVIEDYVHRIGRTGRAGAIGQSISFFASDEDVR 505 Query: 561 MAKAIGETERRREKQQKY 578 MAK + E R + Y Sbjct: 506 MAKDLVEILRESQNDIPY 523 >UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Eukaryota RepID=DDX41_DROME Length = 619 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 58/351 (16%), Positives = 98/351 (27%), Gaps = 28/351 (7%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 +P + Y P ER I K E + + + Sbjct: 233 LPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCL 292 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G P L D L L + ++ + + M Sbjct: 293 AMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMG--- 349 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + F QT+ SAT + +V V G Sbjct: 350 --------------FEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVG 395 Query: 418 LLD----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + + Q ++ + VL+ K+ + + EYL G Sbjct: 396 RAGAASMNVTQQVEYVKQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEA 455 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H D ER + R+G+ DVLV ++ +GLD P V V D Sbjct: 456 VAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMP-----DDIE 510 Query: 534 SLIQTIGRAARNV-NGKAILYGDKITP-SMAKAIGETERRREKQQKYNEEH 582 + + IGR R+ G A +K T S+ + +++ + Sbjct: 511 NYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDE 561 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 97/354 (27%), Gaps = 14/354 (3%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + + ++ LT + L++ + + N + G + Sbjct: 62 KIYETKEHKAPRKVQALILTPTRELALQIHENVKIYAKYLNIIS--TTIYGGVSQKRQEE 119 Query: 328 YLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +V+ + + + R L E L + Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA 443 QT+ SAT S +V+ + I + + Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLI 239 Query: 444 A--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + VLV T TK A L + L G +H R + + + G+ +LV Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILV 299 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ + V + + I IGR R +G A+ D Sbjct: 300 ATDIAARGIDIEALDYVINFELP-----EVPETYIHRIGRTGRAGLSGMALSLVDPSEQK 354 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + + + + + P+ + + K Sbjct: 355 LLTQVEKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKKELPDY 408 >UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 Tax=Rhizobium etli 8C-3 RepID=UPI00019032C1 Length = 411 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 74/436 (16%), Positives = 155/436 (35%), Gaps = 34/436 (7%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + ++ LE+ + Q + G+ GS KT A + ++L PN A QL + Sbjct: 9 KDPQVKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAED 68 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ P++ + F P + + A + R++ A+ E++ Sbjct: 69 LQHVIPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAG 115 Query: 137 VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 + + V++++ +L+ L+ +G ID + R+L + Y R + + G F + Sbjct: 116 IYLLPVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSI 175 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG +IDI+P + +RVELFD E++ + F+ T + + + P + V E Sbjct: 176 RGSIIDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPED 234 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + +E++++ L R E L + Sbjct: 235 LEHGIEQMQKMLEKRLAATTEEADREF---LQDYFGQLTSSWQAGVPTEEAK-----FYS 286 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + T+ DY P++ LLVVD+ + + R + + Sbjct: 287 DLLYQESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQ---- 342 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 F Q + T + + + ++ Q+ L Sbjct: 343 --TFSADIQKIVQKEKFTTTF----FSLFQKGMGNLRFQAIHNF-QYRTMQQFFGQMPLL 395 Query: 436 LSEIRQRAAINERVLV 451 +E+ + + V++ Sbjct: 396 KTEMDRWRKQKQTVVI 411 >UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CDDA3 Length = 1138 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 70/467 (14%), Positives = 135/467 (28%), Gaps = 24/467 (5%) Query: 217 FDEEVERLSL---FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 FDEE+ R F+ T +P V + + Sbjct: 69 FDEELMRQITKLGFEKPTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPLLIHILDQR 128 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 LE N+ L + ++ E + I Y+ + GE + L A Sbjct: 129 ELEKNEGPIGLILAPTRELCQQVYTESKRYAKI--YNISVGALLGGENKHEQWKMLKAGV 186 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + I R + E + + + QT+ Sbjct: 187 EILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDRQTLLF 246 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 +AT + + V G + + + D + Sbjct: 247 TATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFKDQWILNNLNLCLQ 306 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +VL+ L+E +++ LH D ER +II + + ++L+ + Sbjct: 307 KGKVLIFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAK-NLLIATD 365 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMA 562 + GLD+PE+ V D + + I IGR R +G A A Sbjct: 366 VASRGLDIPEIKTVINYDLP-----QDTDTYIHRIGRTGRAGATDGTAYSLILMSESKFA 420 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + + N E K LG + AK K + + + N Sbjct: 421 SDMLKVMEISGQPVPPNLEEVAMNDDQFKAQRLATKLGVDFAKGKDSSKLLKQALSRQRN 480 Query: 623 VPMDMSPKALQQK--IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + K + +++ + Q + + + L L + Sbjct: 481 TKHGLGYKQEDELSIKDQIKADVDQDIKKQKISQTQAPPPPLFDLEQ 527 >UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GSG9_SORC5 Length = 812 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 61/405 (15%), Positives = 115/405 (28%), Gaps = 28/405 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + + L + L++ E+ + G P Sbjct: 84 LPIVDHAVKRSLAQAQVLALCPTRELALQVSAEVERLGKR--KGIKVVAVYGGAPMQRQI 141 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L A ++V + + R L E L + Sbjct: 142 DALAAGAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPP 201 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP-----TGLLD-PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + G L ++ L+ I Sbjct: 202 ERQTLLFSATLPPDIERIARSKLRSPEFITLSGDAVGALQIQHYVYLITGDKLTSLVRII 261 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 E ++ TK E + L+ G +L+ D+ +R +++ R G Sbjct: 262 --EVENPENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRF 319 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+D+ ++ V D F + + + GR R G AI Sbjct: 320 LVATDVAARGIDISHLTHVINYD-----FPQDAEAYVHRTGRTGRAGRTGTAIALITPQD 374 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP-- 616 + T + R +++ E G +V +LA T +R Sbjct: 375 VGPLYILRLTYKIRPLEKQLPSE-GELKTRAEADLVAMLAEAFLSKGTHRDDLSLARRLL 433 Query: 617 -IVEPDNV-----PMDMSPK--ALQQKIHELEGLMMQHAQNLEFE 653 + + + + + A ++ Q A E E Sbjct: 434 THDQAEAIVAGLLRDHLGARPTAQEEASAARRAQQPQRAAARESE 478 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 118/400 (29%), Gaps = 16/400 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R E F E L+ + S I + + T Q Sbjct: 3 RFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPIL 62 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 ++ +K + L + ++ +E+ G ++ + G L A Sbjct: 63 ETIDADKTVRALILAPTRELANQVSDEIYSLKGEKDIK--VLAVYGGASIENQIKRLKAG 120 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + I + + + L E L + E + ++ Sbjct: 121 VDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLF 180 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AIN 446 SAT L + + + + + + E + +D + + N Sbjct: 181 FSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQN 240 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V TK +D+T L+ +H DI R + + + +LV ++ Sbjct: 241 FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVA 300 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 G+D+ ++ V + S + IGR R G AI + S I Sbjct: 301 ARGIDVSNLTHVINYSIP-----QEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQI 355 Query: 566 GETERRREKQQKYNEEHGIT--PQGLNKKVVDILALGQNI 603 + K++ I + VD + + Sbjct: 356 KRVTKTDIKREDIPNVEEILEAKKEALVAYVDEIIKESDF 395 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 111/379 (29%), Gaps = 12/379 (3%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A ++ + + T+ + + G Sbjct: 58 AFAIPALECIDPEERCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQ 117 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D L VV + + G R D R L E L + + Sbjct: 118 LDALRRGVQFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMP 177 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ 441 QT++ SAT + + V P IE + + + Sbjct: 178 EGKQTLFFSATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSR 237 Query: 442 RAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + LV TK++ +D+ + L G V LH D+ + R ++ R G + Sbjct: 238 LLDTGKIKMGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRL 297 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GLD+ +V V + R + IGR AR GKAI + + Sbjct: 298 LVATDIAARGLDVDDVDAVVNFELP-----RDPEDYVHRIGRTARAGRKGKAITFVGRRD 352 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 S+ I + + + V DIL + A + + Sbjct: 353 FSLMSRIERFIGVKLTPEPVLTAVQVDQLRTESLVDDILERLKPDAVLPEELKEVEAAPE 412 Query: 619 EPDNVPMDMSPKALQQKIH 637 D+ + +++ Sbjct: 413 AMAAALFDLLRERTHREVQ 431 >UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=Q6BG49_PARTE Length = 1157 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 124/406 (30%), Gaps = 32/406 (7%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L++ + + ++ + + I N + G L Sbjct: 569 QPALKDGDGPIAIIMAPTRELAHQIYVNCRWFTSILNL--NVVCCVGGAGIAGQLSDLKR 626 Query: 332 DGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +VV I G + R + E + + K + Sbjct: 627 GTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKIIQNIRPDR 686 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 Q + SAT + + + + G ++ IIE + ++ LL + Sbjct: 687 QLVMFSATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQIIEFMDESDKLYKLLLLFQ 746 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +L+ + A+DL + L ++G + LH +D +R I D + G ++ Sbjct: 747 EWYTKG-SILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDFKKGIRTIM 805 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++L GLD+ + LV I IGR R G AI + Sbjct: 806 VATSVLARGLDIKHICLVINFSCPNH-----MEDYIHRIGRTGRAGQKGTAITFFTPQDE 860 Query: 560 SMAKAIGETERRREKQQKY------NEEHGITPQGLNKKVVDILALGQNIAKTK------ 607 +A + + E+Q G K + G Sbjct: 861 HLANDLVYLLEKSEQQLPEKLKEYQKSFMEKVKAGEAKIYRNKNRAGGGFTFGPEEEQKF 920 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 R + R + + MD ++ + E+ + + L+ + Sbjct: 921 QDFRAQMRKKFGLEGLMMDEQSSDDEKVLEEIAKGKLSEEERLKKQ 966 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 51/423 (12%), Positives = 114/423 (26%), Gaps = 20/423 (4%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK---LLEEQRLTQ 288 + P V ++ + + A +L+ E+ + Sbjct: 18 QKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRVHTDVHQEQVLIIA 77 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ ++ +++ G + + G+ L +++ + Sbjct: 78 PTRELIKQISDEAKELGS-ILNVDILPLIGGKTIEAQLQQLGRRPQVILGTPGRLLDHAK 136 Query: 349 G-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 D R+ L E L Q + SAT + + Sbjct: 137 RGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLFSATIPDKIRNLAKAY 196 Query: 408 VVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + +D + + + L+ I +V + A Sbjct: 197 MSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMI--EDDNPFLAIVFCNKREGAI 254 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L+ L G + +H D+ R +I+RD + +LV ++ G+D+ ++ V Sbjct: 255 RLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYN 314 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D R I IGR R +G A+ + + + I + + + Sbjct: 315 YDVP-----RDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIERAIQATLTKYTKD 369 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + L + T + K+ + Q Sbjct: 370 GQIKTKGNASTAPKRTKLVSKPKVTSTYQSTKAKAHKARGHKGSNTRQRRASTSQTGRRG 429 Query: 640 EGL 642 + Sbjct: 430 KRR 432 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 88/289 (30%), Gaps = 32/289 (11%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G + + P L D+L + + + + + + M Sbjct: 124 LAIGGAPKDRQARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLG-- 181 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + QT+ SAT + + Sbjct: 182 ---------------FVEDVRAIAARLPVRHQTLLFSATMSPAISALGRQLLHKPLQIAP 226 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + P A + LL+ +R+ A R +V T TK+ A+ L L Sbjct: 227 PEQAAPPPRIRQQVIFTPAARKAASLLAVLRREA--GGRTMVFTRTKQAADALARTLNTG 284 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH D V R + D R G VLV +++ G+D+ +V+LV D Sbjct: 285 GVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDVMARGIDVEDVALVVNFDIP----- 339 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + I IGR AR G A+ D + I R Sbjct: 340 EQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDIERQSGARITVID 388 >UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8JCM3_CHLRE Length = 637 Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 107/363 (29%), Gaps = 41/363 (11%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-------KLLEEQRL 286 + + +E + + + + + E + + Sbjct: 236 STGSGKTLVFTLPMILIALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCQALN 295 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 R M+ G + P L D L + + ++ + + Sbjct: 296 ADRYPEVRVMLCIGGIDPKPMYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDE 355 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M ++ F QT+ SAT + Sbjct: 356 ADRMVD----------------QVGFEDDVRDILSFFRGQRQTLMFSATMPAKIKAFAES 399 Query: 407 DVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 +VD V G +E ++ LL +++ A VLV KR Sbjct: 400 ALVDPVEVNVGRAGAANMDVIQEVEYVKEEAKLPYLLECLQKTAPP---VLVFAENKRDV 456 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + + EYL G +H D +R I + G+ DVLV ++ +GLD P++ V Sbjct: 457 DIIHEYLLVQGVEAVAVHGDKAQEDRHAAIASFKKGDADVLVATDVASKGLDFPDIQHVI 516 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI--TPSMAKAIGETERRREKQQ 576 D + + IGR R G A + + + ++ + + +++ Sbjct: 517 NYDMP-----EEIENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDLKHLLKEAKQRV 571 Query: 577 KYN 579 + Sbjct: 572 PHF 574 >UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Eukaryota RepID=B6KQ71_TOXGO Length = 1544 Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 57/435 (13%), Positives = 123/435 (28%), Gaps = 32/435 (7%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + + + V ++ + + T+ + + Sbjct: 1006 CLMCGRDVIAVAETGSGKTLAYGLPLIRHVLSVKQQDFRDGAIALVIAPTRELCNQIFKE 1065 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRA 356 ++ G + + ++V I + G + R Sbjct: 1066 INRCCKLVDLNAVAC-YGGAGIGSQLGAIKRGVEVIVGTPGRLIDILTMNGGRLTSLKRV 1124 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 L E + + QT SAT + + + V Sbjct: 1125 TFIVLDEADRMFDFGFEPQVTSIIASSRPDRQTCLFSATFPPHIEALARRILQKPVEIIV 1184 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G + +EV + LL + + V++ + A++L L ++ Sbjct: 1185 GEKGRTAANVQQYVEVMEEERKFFRLLQLLGEWQEHG-SVIIFVNRQVEADELFTELLKY 1243 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G + LH D +R I++ + G +L+ ++ GLD LV + Sbjct: 1244 GYQAATLHGGQDQTDREFTIQEFQDGVRTLLIATSVAARGLDCKHCVLVINMTCPNH--- 1300 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK--YNEEHGITP 586 + IGR R G A + K A + + + + ++ Sbjct: 1301 --IEDYVHRIGRTGRAGRIGVAYTFLTKEDADKADDLEKALTQSGQAVPQALSDLSAQYK 1358 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 Q N + + G + S + + QQ EL + Sbjct: 1359 QECNLGMHEKKKKGGGGFGGRGFSFSASEKSRQ---------QRERQQAKKELGLE--KD 1407 Query: 647 AQNLEFEEAAQIRDQ 661 A++ EF +A + + Sbjct: 1408 AEDEEFLDADLLAPE 1422 >UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MT79_PHYIN Length = 564 Score = 203 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 108/381 (28%), Gaps = 19/381 (4%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T P + I + + + + + Sbjct: 168 FDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSHKHPGPRMLV 227 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + +G + + + G P T L +VV Sbjct: 228 VAPTRELAMQSSAVISEAGKKCGLKSI-CIYGGVPKHTQKKALRDGVHVVVATPGRLKDL 286 Query: 347 IG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + L E L + Q SAT + + Sbjct: 287 VEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPERQIAMFSATWPQSIQKLAH 346 Query: 406 GDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTK 456 + D V G + I+EV + + +++ A + R+L+ L K Sbjct: 347 EFLNDPVKVTIGSDELAASHNVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLFVLYK 406 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + A+ + L + G +H D + +R E + + GE +L+ ++ GLD+P V Sbjct: 407 KEADRVERMLHQRGWNCIAIHGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVE 466 Query: 517 LVAILDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 V + + I G A + A + R + Sbjct: 467 YVMNYSFPL-----TIEDYVHRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRESNQ- 520 Query: 576 QKYNEEHGITPQGLNKKVVDI 596 + ++ + KK + Sbjct: 521 -EVPKDLTKFGTHVKKKEHKL 540 >UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I992_9CLOT Length = 370 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 112/323 (34%), Gaps = 20/323 (6%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L +++ N+K E L+ + +++ E + + G+ + Sbjct: 56 LLPILQIIDSNSKSTEVLILSPTRELAIQITEEANKFNINDIGIL---AAYGGKDVGSQL 112 Query: 327 DYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L L++ + + + + E L N K + Sbjct: 113 KKLNKGINLIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPK 172 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + + + + + +VD L+ Sbjct: 173 KLQTLCFSATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVK 232 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++ TKR A++L L G + +HSD+ +R +I++ R E Sbjct: 233 IL--EEDNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEI 290 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 L+ ++ G+D+ V+ + DA S S I IGR AR +G L D Sbjct: 291 QFLIATDVASRGIDVTGVTHIYNYDAP-----ESVESYIHRIGRTARAGDSGYTCLITDP 345 Query: 557 ITPSMAKAIGETERRREKQQKYN 579 ++ + I + +++ N Sbjct: 346 KNYTILEEIENYLQYTIPEREVN 368 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 98/335 (29%), Gaps = 19/335 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K + + T+ + + G + ++ G+ D L +V Sbjct: 65 QPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIK-VATVYGGQGMGLQLDALERGVEIV 123 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V I + L E L + + SAT Sbjct: 124 VATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSLFSAT 183 Query: 396 PGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 L S + + +D V + L+ I+ + Sbjct: 184 MPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIK---PTKGQ 240 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V TK D+ ++L + + D+ R + + R G+ D+LV ++ Sbjct: 241 AIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR 300 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 G+D+P V LV D + IGR AR GKA+ + + I Sbjct: 301 GIDVPRVELVINYDVPNQEMA-----YFHRIGRTARAGAKGKAVTFVSYSSVGDWNLIKR 355 Query: 568 TERRREKQQ-KYNEEHGITPQGLNKKVVDILALGQ 601 + K + P L +++ GQ Sbjct: 356 QIKVPIKDLNEEMGIEIAIPDPLKRQMPSRRYGGQ 390 >UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V4T2_NAEGR Length = 452 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 99/330 (30%), Gaps = 38/330 (11%) Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G + + P L D+L A + S++ + + M Sbjct: 136 RALKIACLYGGEVRKTQIKECRSKPQVIIATPGRLLDFLQAGITNMKRCSYLVLDEADRM 195 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + + QT++ SAT + V Sbjct: 196 LD-----------------MGFNPQISQITSQVTPDRQTLFFSATWNRSVQSMAMSYVSK 238 Query: 411 QV---VRPTGLLDPIIEVRPV--------ATQVDDLLSEIRQRAAINE--RVLVTTLTKR 457 + G ++ R + ++ L + + E R LV TK+ Sbjct: 239 AEPHFIVNIGSIETSANHRVKQSFLFIQESDKIARLTDLLDKLIKNPEDCRTLVFCKTKK 298 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + +TE L E G +H + ER ++ + R G+ +LV ++ GLD+ V Sbjct: 299 RTDVVTERLREAGWPSLSIHGERKQEEREWVLEEFRSGKTPILVATDVAARGLDVENVKY 358 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V D E S I IGR R G ++ + + + + E+ Sbjct: 359 VINYDMPHE-----IDSYIHRIGRTGRAGKEGNSVSFFTPEDVQLCTPLIKVLEEAEQ-- 411 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKT 606 ++ K D+ Q Sbjct: 412 DVPDKLVKLRDLSTKSHGDLSIKEQRQKDK 441 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 97/369 (26%), Gaps = 16/369 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + + T+ + + L+ G T Sbjct: 60 LQKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTI-YGGMKMATQA 118 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L ++V + I L E L K + Sbjct: 119 QKLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNK 178 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQR 442 Q + SAT + + + + + + + + + Sbjct: 179 KRQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSEL 238 Query: 443 A--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++VLV T T+ A+ L L G +H + R +R+ G+ VL Sbjct: 239 IGTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVL 298 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V + GLD+ + V D + IGR R G AI + + Sbjct: 299 VATEVAARGLDIQGLEYVVNYDLPFL-----AEDYVHRIGRTGRAGKTGVAISFVSREEE 353 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 I + ++ ++ G + I K + ++ + E Sbjct: 354 RTLADIEKLIGQKIRRITVP---GYEVSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGE 410 Query: 620 PDNVPMDMS 628 + + Sbjct: 411 KNMQGRRVK 419 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 108/399 (27%), Gaps = 35/399 (8%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG--QIVSTIPRFTIYPKTHY 249 + VR ++++ ++ V D + F I Sbjct: 41 DYNVRADIVESLADAGITHPFPIQAMTLPVALAGH-DIIGQAKTGTGKTLGFGIPALQRV 99 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM-NELGYCSGIEN 308 V + + A E + + + + + G + Sbjct: 100 VGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEPQV 159 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 S P L D L + + V + + M + G Sbjct: 160 DSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAG--- 216 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR------PTGLLDPI 422 QT+ SAT + + + GL Sbjct: 217 --------------TPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRD 262 Query: 423 IEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I D + + + R ++ T TKR A + E L + G +H D+ Sbjct: 263 IRQLIYRAHSMDKIEVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDL 322 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R + +R R + DVLV ++ G+D+ +V+ V + E+ + +G Sbjct: 323 GQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQC-----VEDEKIYLHRVG 377 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 R R G A+ + D I + + Sbjct: 378 RTGRAGNKGTAVTFVDWDDMPRWGLINKALGLSVPEPVE 416 >UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=Eukaryota RepID=RH35_ARATH Length = 591 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 102/346 (29%), Gaps = 28/346 (8%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 +P I + + P + I + E + + ++ Sbjct: 202 LPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLL 261 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + P L D L + + ++T+ + + Sbjct: 262 CIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFED 321 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 V F+ QT+ SAT + +V V G Sbjct: 322 DIREVFDHFK-----------------SQRQTLLFSATMPTKIQIFARSALVKPVTVNVG 364 Query: 418 LLDP----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 +I+ Q ++ + + VL+ K +D+ EYL G Sbjct: 365 RAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEA 424 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H D +R I + G+ DVLV ++ +GLD P++ V D E Sbjct: 425 VAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAE-----IE 479 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPS-MAKAIGETERRREKQQK 577 + + IGR R G A + +K + + +++ Sbjct: 480 NYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 525 >UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XVZ6_CAEEL Length = 504 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 50/396 (12%), Positives = 112/396 (28%), Gaps = 36/396 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA-MEEIKEE 266 ++ +++ + ++ F + H + + E+ Sbjct: 106 KPSPIQSQMWP-LLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSP 164 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 E + +E + + G + + P L Sbjct: 165 FVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLT 224 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + ++V + + M + + R Sbjct: 225 DLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD----------------- 267 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLS- 437 SAT + + + V+ G LD E P ++ + Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEI 327 Query: 438 --EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + N ++++ +K MA+ L+ G + LH +R + LR G Sbjct: 328 VNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSG 387 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 E +LV +L G+D+P+++ V D + +GR R G+A+ + Sbjct: 388 EVQILVATDLASRGIDVPDITHVLNYDFPM-----DIEEYVHRVGRTGRAGRKGEAMSFL 442 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 S + + + + E++ L Sbjct: 443 WWNDRSNFEGLIQILEKSEQEVPDQLRRDAEKYRLK 478 >UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QE56_CATAD Length = 795 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 63/407 (15%), Positives = 120/407 (29%), Gaps = 35/407 (8%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + E +G +R + G L A LVV + Sbjct: 136 LVVVPTRELAVQVTEDLAAAGKVMAAR-VQSVYGGRAYEPQIAALSAGVDLVVGTPGRLL 194 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 R L E L + QT+ SAT + Sbjct: 195 DLAKQGHLDLSGVRMLVLDEADEMLDLGFLPDVERIVTQVPKDRQTLLFSATMPGQVIAL 254 Query: 404 SGGDVVDQVVR----------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + I + + L + +A +V Sbjct: 255 ARQYMSRPTHIRAADPHDTGTTVANTTQWIYRAHALDKTEMLARML--QAEGRGLTMVFC 312 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR A + E LE G +H D+ R + +R R G+ DVLV ++ G+D+ Sbjct: 313 RTKRTAAKVAEELESRGYAAAAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVE 372 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE--- 569 V+ V +++ + IGR R +G A+ + D I +T Sbjct: 373 GVTHVVNFQCP-----EDDKTYLHRIGRTGRAGASGIAVTFVDWDEVPRWNLINKTLGLD 427 Query: 570 ----RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 R ++ + P +++ +A + + G++ Sbjct: 428 FHEPRETYSTSEWFFKELGIPADAKGRLLKSEQTRAGLAAEEVEDLGETGRGAGARARAT 487 Query: 626 DMSPKALQQKIHELEGLMMQHAQN--------LEFEEAAQIRDQLHQ 664 + A + + E + + A+ + A+ D++ Sbjct: 488 TTTRTAERPARPKRERVRTRGARRGGDEMVGAEDALTASDAADEVLD 534 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 89/294 (30%), Gaps = 9/294 (3%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ E + + + G P D L +++ Sbjct: 72 PQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAKGAHILIGTPG 131 Query: 342 VTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 G + + L E L +K QT+ SAT Sbjct: 132 RIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTLLFSATFPPKI 191 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRM 458 + + D + + +++ + + D + + +L+ TK Sbjct: 192 ESLAKALLKDPLTIKVDTVQEAMKINELVYETPDKFKTLNALIGSYKPDSLLIFCNTKAE 251 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 L + L++ G V +H D+D ER E + ++V ++ GLD+ ++SLV Sbjct: 252 VISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVASRGLDIKDISLV 311 Query: 519 AILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERR 571 D + IGR R G AI I ++ Sbjct: 312 INYDLPF-----DKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQAKQ 360 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 106/331 (32%), Gaps = 13/331 (3%) Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + + + K + T+ + G + R + G Sbjct: 83 APKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRG-ALVIGGVGMGAQSA 141 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L ++V + + R D L E L + + Sbjct: 142 ALRDHEVIV-ATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKV 200 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQR 442 QT+ SAT E + + D V + E + Q + L + Sbjct: 201 RQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLMALL 260 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + LV T TKR A+ + + L+ G +V +H+D +R + R G++ VLV Sbjct: 261 EEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 320 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ G+D+ E+ V D + +GR AR +G+A + + Sbjct: 321 TDIAARGIDVAEIGHVVNFDLPH-----VPEDYVHRVGRTARMAASGRASAFASPEELDL 375 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + I R + + EH L + Sbjct: 376 LRDIERLTRAPIPRAEVPREHATFQAELQRA 406 >UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2UZP5_NAEGR Length = 483 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 25/270 (9%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L L + + + D +V + + + + Sbjct: 191 YIHIVVATPGRLIQMLNENKIQLNDCKYVCMDEADRLIDLGFEEDIKTI----------- 239 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----IEVRPVA 429 + Q ++ SAT + + ++ G + I+ Sbjct: 240 ---FQHLNLNNNHIQKVFFSATMPEKIQNLAMNTLNQPIIVNVGRAGAVNLDVIQEVEYV 296 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + D ++ ++ VL+ + K + + EYL G +HS D ER I Sbjct: 297 QEEDKIVYLLQALQKTPPPVLIFSQNKSEVDTICEYLLLKGVEAVSIHSSKDQSEREYAI 356 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + G+ VLV +++ +G+D P V V D +E + + IGR R G Sbjct: 357 DSFKQGKKHVLVATDIVSKGIDFPNVKHVINFDMPRE-----IENYVHRIGRTGRNGKTG 411 Query: 549 KAILYGDKI-TPSMAKAIGETERRREKQQK 577 A + +K + + + + ++ Sbjct: 412 LATTFINKNQSEQILLDLKYLLKEANQRIP 441 >UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PLC1_9ACTO Length = 815 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 101/312 (32%), Gaps = 20/312 (6%) Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + +T + +++ +L S + + + G + Sbjct: 61 EPDYEELAAPGKPQALVVTPTRELTIQVAKDLTTASTV--RTVRILTIYGGVAYEPQLEM 118 Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +VV + + + L E L + Sbjct: 119 LKSGVDVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELR 178 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP---------TGLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + + + + + + Sbjct: 179 QTMLFSATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARI 238 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + +A RV++ TKR A LT+ L + G + +H D++ R + R + D Sbjct: 239 L--QAEDRGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKID 296 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VL+ ++ G+D+ V+ V E++ I IGR R +G A+ + D Sbjct: 297 VLICTDVAARGIDVEGVTHVINNTCP-----EDEKAYIHRIGRTGRAGASGIAVTFVDWA 351 Query: 558 TPSMAKAIGETE 569 + K I + Sbjct: 352 DVTRWKTINKAL 363 >UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D315_PARTE Length = 1127 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 55/388 (14%), Positives = 115/388 (29%), Gaps = 34/388 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ +F + + + + E+ Sbjct: 122 APTPIQSVVFP-LILSGYDLIGVAETGSGKTFGYLLPGLIQIKCQNYGSNFRNRINGPEI 180 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 ++ ++ L + G + + P L D Sbjct: 181 LILAPTRELVMQIAQQVSLFMKPNNLTVATAYGGQNRDQQAQQIKRNPDILVACPGRLKD 240 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L L + +++ I + + + + Sbjct: 241 FLQEGILDLSKVTYLVIDEADRLLDMGFE-----------------DDVRFIVQRTRQDR 283 Query: 388 QTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPII-------EVRPVATQVDDLLSEI 439 QT++ SAT S D + G + + + Q L +I Sbjct: 284 QTVFFSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLYNNQKLQTLLDI 343 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + IN++VL+ T+ E L+ + + G LH + +R I+ + G+ + Sbjct: 344 LDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECYKKGDTKL 403 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD--K 556 L +L GLD+ ++++V D K I IGR R G+AI + K Sbjct: 404 LCATDLASRGLDVSDITVVINYDFPKY-----FDDYIHRIGRTGRAGRKGRAISFFAIGK 458 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGI 584 P MA+ + + ++ + + I Sbjct: 459 DQPQMARELLKFDKINKMKLDVQTMQDI 486 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 66/483 (13%), Positives = 138/483 (28%), Gaps = 65/483 (13%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +LR L L Y + P ++ I + V + S Sbjct: 10 DFLLRSLETLGYE------------------EATPIQAAAIPV--------VLKGSDLLA 43 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + + + + + + + L E+ Sbjct: 44 AAQTGSGKTAAF----SLPIIERLAGMEEQKAKPRFLVLVPTRELAVQVGAAIERYAEGA 99 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + ++ G + + + P L D +++ + + + + Sbjct: 100 PRKARVLVAFGGVGYDAQMKAAYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADR 159 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + A + E Q + SAT + + + Sbjct: 160 LLALGFAEEL-----------------NTILEMLPEGRQNLLFSATFPQNVVSLANALLK 202 Query: 410 DQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 D V +E + LL + + ERVLV +KR AE++T Sbjct: 203 DPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLET-EGWERVLVFVGSKRRAENVT 261 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L++HG + LH ++ +R + + + VL+ ++ G+D+ + V D Sbjct: 262 VKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDIAGLPCVVNYDL 321 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 RS + IGR R +G A+ + + + I + R ++++ Sbjct: 322 P-----RSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLIEKKNGLRLERER---LE 373 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G P+ N D + + + K R + L Sbjct: 374 GFVPENWNP--EDPAKGKAPVKGKRPSKKDKLRKAAAGKARGSGGNKDVSSPWARALRKA 431 Query: 643 MMQ 645 + Sbjct: 432 TGE 434 >UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 Tax=Spiroplasma citri RepID=Q14NT1_SPICI Length = 443 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 114/368 (30%), Gaps = 23/368 (6%) Query: 229 PLTGQIVSTIPRF----TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN---KLL 281 P ++++ + + I+ + A +L+N Sbjct: 10 PALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQNLNTHLKQ 69 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T + E + G L ++V Sbjct: 70 PQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKSNIIV-GTPG 128 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I R D+ + L E L K + QT+ SAT Sbjct: 129 RIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLFSATMPKQV 188 Query: 401 LEKSGGDVVDQVVRPTGL----LDPIIEVRP--VATQVDDLLSEIRQRAAINERVLVTTL 454 LE + + V + I + ++ +D+L + + +R ++ + Sbjct: 189 LEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHL-QPKRSIIFSN 247 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK + E L +G ++ D ER + +R R G+ V+V ++ G+D+ Sbjct: 248 TKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAARGIDIDN 307 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-DKITPSMAKAIGETERRR 572 + V D E S I IGR AR G AI ++ + +G ++++ Sbjct: 308 IDYVINYDIPTE-----RESYIHRIGRTARAGATGVAISIVSNRNDLREIQHLGAYQKKK 362 Query: 573 EKQQKYNE 580 + Sbjct: 363 IELLDITT 370 >UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 n=3 Tax=Embryophyta RepID=RH44_ARATH Length = 622 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 110/366 (30%), Gaps = 12/366 (3%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++ F + + + E L L + E + R Sbjct: 253 ISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTRELAHQIEEETVK-FSR 311 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + P L D L +++ +++ + + Sbjct: 312 YLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLERRYVVLNQCNYLVLDEADR 371 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M D + + V + + + E + + T SAT + + Sbjct: 372 MIDMDFEPQVSEVLDVMPCSNLKPEKEDEELEEKKIYRTTYMFSATMLLSVERLARKFLR 431 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA---INERVLVTTLTKRMAEDLTEYL 466 + VV G I + + T+ D S +++ ++ +V T+ + + + L Sbjct: 432 NPVVVTIGETTKFITQQVIMTKESDKFSRLKKLIDDLGDDKTAIVFVNTRNKVDYIVKNL 491 Query: 467 EEHG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 E+ G RV LH+ +R + + + F+VLV ++L GLD+ +++ V D Sbjct: 492 EKVGRCRVTTLHAGKSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPN 551 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR R G A + + + + E Sbjct: 552 -----TMDLYTHRIGRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNS-LVPPELARH 605 Query: 585 TPQGLN 590 Sbjct: 606 EASKFK 611 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 97/342 (28%), Gaps = 15/342 (4%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + L + + T+ + + Sbjct: 35 ILLNKHDLLGIAQTGTGKTAAFALPILHHILSNRIIPAPRSCRVLVLSPTRELATQIAD- 93 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKE 359 + + + ++ G + L ++V I I Sbjct: 94 SFKAYSKGLGLQIATIFGGVKYGPQYKALQGGIDILVATPGRLIDHIEQKTIDLKAVEHL 153 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 L E L + Q ++ SAT + + + Sbjct: 154 VLDEADQMLDMGFIKPIRQVASRLPAQRQNLFFSATMPKEIAGLANELLTNPKKVEITPE 213 Query: 420 DPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 E + + LLSE+ + R L+ T TKR A+ + YL+ G Sbjct: 214 ATTAERVTQQVIFIEQQRKRALLSELYADEKL-ARTLIFTRTKRGADRVAAYLQAGGVEA 272 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H D + +R ++ + G LV ++ G+D+ V+ V + Sbjct: 273 AAIHGDKNQSQRERALQAFKAGRVRALVATDIAARGIDVDNVTHVINYELPF-----VAE 327 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 + + IGR AR G +I + K I R+R Sbjct: 328 AYVHRIGRTARAGKEGHSITLVADDERKLLKDIERITRQRIP 369 >UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=3 Tax=Piroplasmida RepID=A7AWZ5_BABBO Length = 994 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 98/368 (26%), Gaps = 24/368 (6%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + M + + + T+ + Sbjct: 421 ALMCGRDVLAIAETGSGKTMAYLLPAIRHVLYQPKLRENEGMIVLIIAPTRELASQIGVE 480 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP----QIGGMYRGDRA 356 R G P + L +V I G + R Sbjct: 481 SSKLCKLVGIRTK-AVYGGSPIGEQLNALKRGVEIVCGTPGRLIEVLTISNGKVTNLRRV 539 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + E + + QT SAT + + + Sbjct: 540 TFVVIDEADRMFDLGFSPQISAIVDNIRPDRQTALFSATFPPTIEALAKKILTKPLQIIV 599 Query: 417 GL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G +D + V P ++ LL + + ++V + A+ + L +H Sbjct: 600 GESGKSASQVDQHVMVLPERQKMYALLKLLGEWHEHG-SIIVFVNRQLDADSMYAELIKH 658 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH D +R ++D R G +L+ ++ G+D+ V LV Sbjct: 659 GYDCAVLHGGQDQTDREFTLQDFRDGTKGILIATSIAARGIDVKNVVLVINYATP----- 713 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN-----EEHG 583 + +GR R N G + + + + I + + + E H Sbjct: 714 DHIEDYVHRVGRTGRAGNIGTSYTFITPEEGAKSHDIIKAMKASNQVVPIELQELAEMHL 773 Query: 584 ITPQGLNK 591 T G K Sbjct: 774 ATLDGRQK 781 >UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas RepID=C1E681_9CHLO Length = 790 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 57/373 (15%), Positives = 101/373 (27%), Gaps = 35/373 (9%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + P + + L N E Q + Sbjct: 178 RTGTGKTLGFSLPIIESLLSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQATVPSLRT 237 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + P L D + L + D + + + M Sbjct: 238 L---CVYGGVAISNQERPLRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLA 294 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + E QT SAT ++ + + D V Sbjct: 295 VGFE-----------------EDVERIMEEIPEQRQTFLFSATMPSWVTRITQKYLADHV 337 Query: 413 VRP-TGLLDPIIEVRPV-------ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 G + + T +L+++ + + T TKR A+++T Sbjct: 338 TIDLVGSQEQKVADTIDVMSCACSHTSRTTILADLVTVYGKGAKAICFTQTKREADEVTA 397 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L LH DI +R ++ R G F VLV ++ GLD+ +V LV + Sbjct: 398 ALGRR-MATEVLHGDIAQAQRERTLKRFRDGRFSVLVATDVAARGLDITDVDLVVHYELP 456 Query: 525 KEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 S + GR R G AI S ++I + + Sbjct: 457 H-----DTESFVHRCGRTGRANKKGAAIAMYTPREKSRIRSIVRETGVKFRVINPPTAAE 511 Query: 584 ITPQGLNKKVVDI 596 + + ++I Sbjct: 512 VMTSSAEQASIEI 524 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 17/328 (5%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A + + L + + + T+ + + + G + + G P Sbjct: 57 AFAIPICESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVK-VPVVFGGFPFDKQ 115 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + G + + + E L + + + Sbjct: 116 ALTLKQKSHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLP 175 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLS 437 + SAT G + + V ++ + + + L Sbjct: 176 ENITIMLFSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLR 235 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++ T+ M E L L++ LH ID +R+ I D R G F Sbjct: 236 MLYK--NNPTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGF 293 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 L+ ++ G+D +++ V D S+ + + IGR R +GKAI + + Sbjct: 294 RYLIATDVAARGVDFDDITHVINYDLPM-----SKETYVHRIGRTGRNGKSGKAISFIRE 348 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGI 584 M I + + E + Sbjct: 349 EEKKMLSLIEKFTGTPIEIVTPPSEEEV 376 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 102/334 (30%), Gaps = 29/334 (8%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + + L L + + +T+ + + G G++ Sbjct: 59 LPIIQTVQQKKLNGTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCV-YGGTSIGVQK 117 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P L D+L + + S + + + M Sbjct: 118 RKLEEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDM--------------- 162 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---- 424 + Q + SAT + + V + E Sbjct: 163 --GFWPDLQRIFRRLPAEKQILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQ 220 Query: 425 -VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V PV + L + ++VLV T TK+ +++L + L+ G + ++ D Sbjct: 221 MVYPVDKKRKRELLAYLIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQG 280 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R + + + G+ L+ ++ GLD+ E+ V D + IGR Sbjct: 281 ARQRALDEFKQGKVRALIATDVAARGLDIQELEQVVNFDMPF-----KAEDYVHRIGRTG 335 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 R +G A+ + + AI +R Q+ Sbjct: 336 RAGKSGLAVSLMSRDEEYLLHAIENLLDQRLPQE 369 >UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetales RepID=PRP28_DEBHA Length = 580 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 114/383 (29%), Gaps = 29/383 (7%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P ++ + L ++ ++ +G+ ++ + Y + Q Sbjct: 178 PTPIQRASIPLALNGRDIVGIAE--TGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNF 235 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE-NYSRFLSGRGPGEPP 322 + L E + ++ + +L ++ +G E +S P Sbjct: 236 NKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATP 295 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D L + + + T+ + M + + L+ F Sbjct: 296 GRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGKI-F 354 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVAT----- 430 T+ +AT + + ++ V ++ E Sbjct: 355 NIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSDEI 414 Query: 431 ----QVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTV 483 ++D L S +R N +++ K+ E+L L G +H Sbjct: 415 LDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQE 474 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R I R G+ +L+ ++ G+D+P VSLV + I IGR Sbjct: 475 ARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQM-----TKKFDEYIHRIGRTG 529 Query: 544 R-NVNGKAILYGDKITPSMAKAI 565 R G + + D + + Sbjct: 530 RAGNKGTSCTFIDDGDSEVFLDL 552 >UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V7B8_MONBE Length = 592 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 99/359 (27%), Gaps = 36/359 (10%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + I + A E + + + Sbjct: 196 TGSGKTLAFSLPALMLALDQEIKMPFVGGEGPFAIIMAPSRELARQTYDVLIEFTDALAK 255 Query: 295 E-------MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 E M+ G P L D L + + + + + Sbjct: 256 EGYPQLGIMLCIGGLSMQEVMERCQNGVHIAVCTPGRLIDVLGKKRITLDVCRYFCLDEA 315 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M ++ + QT+ SAT + + Sbjct: 316 DRMVDMG-----------------FEDDIRTIFSYFKGQRQTLLFSATMPTKVKDFAASA 358 Query: 408 VVDQVVRPTGLLD-----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 +V V G +I+ ++ + V++ + K+ +D+ Sbjct: 359 LVKPVTVNVGGRAGAASLDVIQEVEYVNPDSRVVYLLECLQKTPPPVMIFSEKKQDVDDI 418 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 EYL G +H D ER ++ + G DVLV ++ +GLD P++ V D Sbjct: 419 HEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASKGLDFPDIKHVINFD 478 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP-SMAKAIGETERRREKQQKYN 579 + + IGR R+ G A + + P + + + ++ Sbjct: 479 MP-----EELENYVHRIGRTGRSGKTGLATTFVSDMVPMTTLLDLKYLLKEARQRIPPF 532 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 113/366 (30%), Gaps = 29/366 (7%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L G + + +A L L R + Sbjct: 62 DVLGGAKTGSGKTAAFALPIIQKLAKASPRKAGGNFVSCLVLVPTRELAQQVADSFMRYS 121 Query: 288 QRTQFDLEMMN-ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + +L+ + G + ++ S P L D + ++ L + + + + + + Sbjct: 122 QLIKPNLKTLAVYGGVSTNVQMQSLRGGADIVVATPGRLIDLISSNALKLDNTTTLVLDE 181 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 M + + QT+ SAT E + Sbjct: 182 ADRMLSLGFTEELNELLA-----------------KLPKTKQTLLFSATFPEEVRELTDS 224 Query: 407 DVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + V + + + LL+++ + ++VL+ K L Sbjct: 225 LLNNPVEVQLQSSEESTLVQRVITVNRNRKTALLAQLIKD-NQWQQVLIFASAKYSCNRL 283 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + LE G HSD R ++ + + GE VL+ ++ G+D+ ++ +V + Sbjct: 284 AQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISVLIATDIAARGIDIEKLPIVINFE 343 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 RS + IGR+ R G A+ K I + + R ++++ Sbjct: 344 LP-----RSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIEKKNKLRLEREQIPGF 398 Query: 582 HGITPQ 587 Sbjct: 399 EADLEA 404 >UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C599_THAPS Length = 681 Score = 201 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 56/383 (14%), Positives = 107/383 (27%), Gaps = 35/383 (9%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 L + ++ + + G L ++ Sbjct: 135 PIGLILAPARELAYQIHVVCKGFTKHLGLKS--TAVYGGAGVAEQIGDLKRGTHILCATP 192 Query: 341 HVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 I Q G + R L E +++ QT+ SAT Sbjct: 193 GRLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSAVRPDRQTVLFSATF 252 Query: 397 GNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + + G +D EV + LL + A ++V Sbjct: 253 PKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRLLQILGDHADDQKKV 312 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR--LGEFDVLVGINLLR 507 +V + A+ L E L G +H +D +R + D + +VLV ++ Sbjct: 313 IVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRVDSGVNVLVATSVAG 372 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT-----PSM 561 GLD+P V + + +GR R G A + + PS+ Sbjct: 373 RGLDVPSCGCVVNYASPNH-----LEDYVHRVGRTGRAGNRGVAFTFVNSTDEAKFAPSI 427 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVD---ILALGQN------IAKTKAKGRG 612 +A+ E + + Q+ NE + + K G+ K Sbjct: 428 VRALVEAGQSKNISQELNELSESYKEKVAKGEARWASSGYKGKGYTYDSSELNDSQKLAQ 487 Query: 613 KSRPIVEPDNVPMDMSPKALQQK 635 + + +D + Sbjct: 488 LEKREALIEAGLLDSDDEEGGPA 510 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 100/652 (15%), Positives = 199/652 (30%), Gaps = 78/652 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + IR + L G + + + + +A + L RP +V+ P + A Sbjct: 14 LTNALVGSRTIRTVASRLASGQSLVA-EELPVAARPAVLAALARILDRPLLVIVPRQAHA 72 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L + + E VE + + +T + + R + M Sbjct: 73 DELADAVGQLLGEIPVEVWQ-------------APETLPYDVFAQDRASAVERSWFLQRM 119 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E + +A + L P + L L VG + + +L L + YA Q Sbjct: 120 TEPSPGLFIAPARGLLQLLPPNESLRGCPLTLRVGQKMALQTVLDYLVDSGYAPVPLVQQ 179 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G+F RG ++D++P +D +A+R+E F +E++ + F+P T + V + + P + Sbjct: 180 PGSFSRRGGIVDVWPPGND-LAVRIEFFGDEIDSIRRFEPTTQRSVDRLHSIMLLPLSEA 238 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 P+ ++ +L L E +RL Q+ + G Sbjct: 239 PLPQ------LQAAATKLRRLDTSSLRPEVREEWERLCQQIER------------GELVP 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L+ +L D P +VV + I + + +ET G Sbjct: 281 LPELALPFVFPEASSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELRETSELSGELPR 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + +L I T + + GD+ + T + +A Sbjct: 341 GLPRPYHPDDRIWTSLRVHPILWLGTVEQG--DSANGDIPSDLGFTTDIPA-------IA 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++D L + + A + V + T A+ L L E + T+ R + Sbjct: 392 GRLDTLPAVLAPFLAEDYAVTLVT---EQADRLAHLLSESSQYAEAASIAASTIARGRLP 448 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + E +L+ D + G R G+ Sbjct: 449 GGWKHREARLLLLT------------------DRELFGLRRLP------------RPRGR 478 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 S +Y +T G++++ + + + Sbjct: 479 RRFEVTSDLLSRLVPGAYVVHVDHGIARYGGLVHLTINGVHREYLLLEYAENDRLYLPVD 538 Query: 610 GRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + D P + + + + + A L AA+ Sbjct: 539 QLDRITLYESLDGEPKLTRLGSPEWSRVKRRVREAVRELAFELLQLYAAREA 590 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 66/431 (15%), Positives = 129/431 (29%), Gaps = 39/431 (9%) Query: 217 FDEEVERLSLFD--PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 +D E+E ++ P + + + P + + ++ A Sbjct: 602 WDRELEESFPYEETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVALRAAFKAVNN 661 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q E + + + R + + + L A Sbjct: 662 GYQVAILVPTTVLALQHYNTFRERLASYPVRIEMLSRLRSKREQRA------IIEGLRAG 715 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + +V +H + + R + +G + + Sbjct: 716 TVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKEHFKRL--------RTNVDVLTM 767 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLV 451 +ATP L + V D V T +D V D ++ I + A +V V Sbjct: 768 TATPIPRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPARDSVIREAILREIARGGQVYV 827 Query: 452 TTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 D + L H + E II D ++DVL+ ++ G Sbjct: 828 VHNRVHSILDFAQRLRGLVPEARFAVAHGQMPEQELERIIVDFIERKYDVLICTAIIESG 887 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+P V+ + I A + G + L Q GR R+ + +A Y + + Sbjct: 888 VDIPSVNTIIIDQAQQLGLTQ----LYQLRGRVGRS-HQRAYAYLLYDDR---RPLSAEA 939 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 R R + + E G GL + D+ G + V +++ Sbjct: 940 RARLEAIQEATELG---AGLQIALRDLEIRGAGNILGPEQSG-------HIAAVGLELYT 989 Query: 630 KALQQKIHELE 640 + L + + EL Sbjct: 990 QLLARAVQELR 1000 >UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 Tax=cellular organisms RepID=DDX27_HUMAN Length = 796 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 53/376 (14%), Positives = 122/376 (32%), Gaps = 36/376 (9%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMY 351 + G + + + P L D+L + + + + M Sbjct: 318 ITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRML 377 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + + + + Sbjct: 378 DEYFE-----------------EQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNP 420 Query: 412 VVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V I +RP + + + V++ T TK+ A + Sbjct: 421 VRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMH 480 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L G +V LH ++ +R+E +R + + D+LV ++ GLD+ V V Sbjct: 481 ILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVIN--- 537 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + + +GR AR G+++ + M K I + + K + ++ Sbjct: 538 --FTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV 595 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + K+ + + + +A+ + + + + + K + + E E Sbjct: 596 ILK---FRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTA-KRLLEKGKEAVVQEPERS 651 Query: 643 MMQHAQNLEFEEAAQI 658 Q + + E+ A+ Sbjct: 652 WFQTKEERKKEKIAKA 667 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 59/390 (15%), Positives = 114/390 (29%), Gaps = 21/390 (5%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L + + T+ + +N+ G R L+ G P T Sbjct: 58 YLLPILMKVKYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLAL-YGGLGPKTQ 116 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L ++V + G R L E + + E Sbjct: 117 IETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIP 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII----EVRPVATQVDDLLSEI- 439 Q + SAT G S + + +V A ++ + Sbjct: 177 TKRQNLLFSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLD 236 Query: 440 -RQRAAINERVLVTTLTKRMAEDLTEYLEEHGE---RVRYLHSDIDTVERMEIIRDLRLG 495 R +RV++ TK A+++ ++L ++R +H++ R+ + + G Sbjct: 237 YLMRQEDFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEG 296 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 VLV ++ G+D+ EVS V D + IGR R G+AI + Sbjct: 297 NIQVLVSTDVAARGIDVAEVSHVINFDLPLI-----YEDYVHRIGRTGRANRTGEAITFL 351 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 K + I + +Q G+ + + + + K Sbjct: 352 TKAEEYHVQKIERIIKATIPRQPLPA--GVVVAETPFEEEQAMLREIDEQRRKEDPTFLG 409 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + + + +L G Sbjct: 410 AF--HEKKITNMAPGRERDKAQAKLSGAKK 437 >UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQY6_BDEBA Length = 473 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 123/390 (31%), Gaps = 22/390 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K + ++ + + ++ E + G + L + L+ Sbjct: 96 QKKPEARGLILVPSREMAQQIYKVFLELCAEM-PVSVCLAIGGTTGSKQANQLKKNPRLI 154 Query: 337 VDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + G L E L + + QT+ SA+ Sbjct: 155 IATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMMFSAS 214 Query: 396 PGNYELEKSGGDVV-DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 G+ + + D V+ P L + + + D LL E+ A Sbjct: 215 FGSNVESIAQLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDELN---ATRG 271 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 V+V T + E + YL+E+G +H + +R ++R R GE ++V +LL Sbjct: 272 GVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVATDLLA 331 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+P V V D + IGR AR G+AI + M I Sbjct: 332 RGLDVPHVDHVVNFDLPF-----QSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAKIK 386 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + ++ + I K + A G A+ A G+ ++ P P Sbjct: 387 GYLQGAQEIKVDPTFAFI--DRSKKFDKNKPAKGNEPARRNAPGKPQAVKKAAPAGKPKS 444 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 K + A+ F + Sbjct: 445 KGGKI-NPFAGKTVAPKKSGAKKSGFAKRK 473 >UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteria RepID=Q7MC00_VIBVY Length = 436 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 100/354 (28%), Gaps = 19/354 (5%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 ++ + T+ ++E G + G L + ++V + Sbjct: 91 EQKALILVPTRELATQVSEAINQVG-QALGLNAVCLCGGVDKEQQLQALATNPHILVATT 149 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + L E L + QT SAT + Sbjct: 150 GRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQTAMFSATFSDEL 209 Query: 401 LEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 K+ + + + + ++ L+ I + + LV Sbjct: 210 KGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELI--QKNAWTQALVFI 267 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 K A+ L + L + G LH D ER E + + G+ VL+ +LL G+ + Sbjct: 268 GAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLARGIHIE 327 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 ++ +V + + + +GR AR G A+ AI +R Sbjct: 328 QLPVVINFELPMH-----AETYVHRVGRTARAGEQGVALSLVCHGEMDALSAIRHLTQRE 382 Query: 573 EKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 Q + + + D A + K K P + Sbjct: 383 LPVQDLEGFPVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRPAPKSK 436 >UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi RepID=DDX21_HUMAN Length = 783 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 116/380 (30%), Gaps = 32/380 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + T F+ E + + L L N + + Sbjct: 225 DLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDI- 283 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 T+ G G + P + D++ L + HV + ++ Sbjct: 284 --TKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEV 341 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M A + + + +++ PQT+ SAT ++ + Sbjct: 342 DQMLDMGFADQVEEILS------------VAYKKDSEDNPQTLLFSATCPHWVFNVAKKY 389 Query: 408 VV------DQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + D + + T +E + + IR + R ++ TK+ Sbjct: 390 MKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKK 449 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A++L++ + + LH DI +R ++ R G F VLV N+ GLD+PEV L Sbjct: 450 EAQELSQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDL 508 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V + S I GR R G I + + + + K+ Sbjct: 509 VIQSSPP-----KDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRI 563 Query: 577 KYNEEHGITPQGLNKKVVDI 596 I + + Sbjct: 564 GVPSATEIIKASSKDAIRLL 583 >UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY2_METPP Length = 516 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 87/308 (28%), Gaps = 32/308 (10%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + L + G G + + + P L D + + + Sbjct: 186 QHPLRDAARGLRIATVVGGMPFGKQLFDL-RGAQLVVATPGRLLDLHSRGQIRLDATQVL 244 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + M + A QT+ SAT + Sbjct: 245 VVDEADRMLDLG-----------------FAEDLAAIADATAQRDQTMMFSATFAPRIMA 287 Query: 403 KSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + + + LL + A ++ + +V T Sbjct: 288 LASKLMRSPGRLELATAHDVHSDITQTLHWADNMGHKQALLEHWLRDAEVD-QAVVFAST 346 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + E + E L++ G LH + R ++++R G VLV ++ GLD+P + Sbjct: 347 QVDTEAIAEALQQQGHSAVALHGAMPQAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSI 406 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 S V G + IGR R G AI + +AI R+ + Sbjct: 407 SHVIN-----FGLPMKAEDYVHRIGRTGRAGRSGTAITIAEHRERGKIRAIEAFTRQPIE 461 Query: 575 QQKYNEEH 582 Sbjct: 462 ASVIVGLE 469 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 118/392 (30%), Gaps = 41/392 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 FT+ + Q+ + L L + T Sbjct: 70 QTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRASVLVLAPTRELAVQVNTNVSQYAVNTD 129 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + P L D++ L + D ++ + M Sbjct: 130 -VSSIVIYGGVSIDAQATKLAAGVDVIVATPGRLLDHVRRGTLNLSDIEYLVFDEADRM- 187 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 L + + QT+ SAT + E S + Sbjct: 188 ----------------LDMGFMDEINAILKQLPAKRQTLLFSATFSSAIFELSKKLLQKP 231 Query: 412 VVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + ++ ++ + + L I + ++VLV + K+ A+ + + Sbjct: 232 LRIEVDKANSAANSIEQVVYAVDSERKTELLCHLI--NKSAWQQVLVFSRKKQTADLIAQ 289 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + G + H D+ R +++ D + G+ LV ++ GLD+ E+ +V + Sbjct: 290 KMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVELKVVVNYEIP 349 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + IGR R GKAI + + + + +R QQ Sbjct: 350 F-----VAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQWL----- 399 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 +G + + + + +K + R K R Sbjct: 400 ---EGFEPDLTKLEPVTRKNSKAAQRQRAKKR 428 >UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax=Theileria RepID=Q4UBV5_THEAN Length = 797 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 44/415 (10%), Positives = 108/415 (26%), Gaps = 73/415 (17%) Query: 232 GQIVSTIPRFTIYP-KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F + + T + +A ++L + L Q T+ Sbjct: 291 QTGSGKTAAFLLPIVTSMLRTGPPKQPSLGPLYNSRVALPVCLVLSPTRELAVQTYTESR 350 Query: 291 QF-----DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 +F ++ G + P L D + ++ ++ + Sbjct: 351 KFNFGTGIRTVVLYGGSEVRRQLIELERGCDICVATPGRLTDLVERRKIVFSCIKYLVLD 410 Query: 346 QIGGMYRGDRARKETLVEYGFRL----------PSALDNRPLKFEEFEALAPQTIYVSAT 395 + M + + + + D+R ++ S Sbjct: 411 EADRMLDMGFSPQIKSILSHPTMTSNVDNSDRVRGGSDSRVSSIRGEGRSTKDSVRDSME 470 Query: 396 PG--------------------------------------------NYELEKSGGDVVDQ 411 + + + D Sbjct: 471 TPLGVKEDPFGAGGTTSLGGADTVTGDTVKEKKILRQTVMFSATFPKEIQQLAREFLNDY 530 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + G + + ++ L+ ++ + VL+ TK+ A+ + Sbjct: 531 IYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIKLLKDNTNLGGLVLIFVETKKRADLIEG 590 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL + +H D +R + + + G ++V ++ GLD+ ++ V D Sbjct: 591 YLLSENFKAVNIHGDRSQEDREKALSLFKAGVRPIMVATDVAARGLDISNITHVINCDLP 650 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + IGR R N G A ++ + K + + ++ Sbjct: 651 T-----NIDDYVHRIGRTGRAGNIGIATSLVNESNRPILKDLLLLLQESNQEIPI 700 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 48/375 (12%), Positives = 103/375 (27%), Gaps = 12/375 (3%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 ++ + I + T + Q L + + + T+ Sbjct: 25 MTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELC 84 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 + G + G + + L +VV I Sbjct: 85 VQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKGAQVVVATPGRLHDLIRRGAVDL 144 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E L + + T+ SAT + + D + Sbjct: 145 SGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSATMPREVAAIAANYMKDPLE 204 Query: 414 RPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEE 468 G + ++ +R+ A +N ++ T+ ++ + L E Sbjct: 205 IIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNPELYAIIFCRTRLETREIVDKLIE 264 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G LH D+ +R ++ R +LV ++ GLD+ +++ V Sbjct: 265 DGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDVAARGLDVNDLTHVINY-----SL 319 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 GR R G +I + +AI ++ ++ + H I + Sbjct: 320 PEESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCLKKNFEEGRIPSGHEICKR 379 Query: 588 GLNKKVVDILALGQN 602 L + + + Sbjct: 380 RLLSHMEAVKKTEID 394 >UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Cryptosporidium RepID=A3FQ46_CRYPV Length = 529 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 102/353 (28%), Gaps = 31/353 (8%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-- 293 F I ++ + +E L L E Q+L +T Sbjct: 191 GKTIAFLIPLISYVGNKPILDYKTSQEGPYGLILAPARELALQIEDEAQKLLNKTHELKR 250 Query: 294 -LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G + +S P + D L ++V S+V + + M Sbjct: 251 IRTLSIVGGRNIDQQAFSLRKGVEIIIATPGRMQDCLEKTLTVLVQCSYVILDEADRMID 310 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + + T SAT + + + Sbjct: 311 LGFQDSLNFILDQIPPE---------------IQRTTHMFSATMQKELENIAKRYLNSPI 355 Query: 413 VRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 G + I+ + L++ + + ++V K+M + + Sbjct: 356 NVTIGDIGAGKKSIQQILNFISENKKKSTLINTLNNKELAVPPIIVFLNQKKMVDIVCRE 415 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 + HG + LH R + + G FD+LV ++ G+D+ ++LV D Sbjct: 416 IVSHGFKATSLHGGKMQEVRENSLNLFKSGVFDILVSTDVAGRGIDINNINLVINYD--- 472 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 F +S + IGR R NG AI + + + + Sbjct: 473 --FPKSIDTYTHRIGRTGRAGKNGIAISFITPEDSGLFPELKKILLTSNNPIP 523 >UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DIA1_LACTC Length = 589 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 60/407 (14%), Positives = 120/407 (29%), Gaps = 27/407 (6%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +I+ + ++ + T+ TP + Sbjct: 199 GIIETKLKYLEPTPIQRATIPNVLNGRDFVGVAATGSGKTLAFLIPPLCQLNNTPPLNDI 258 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 M+ + A + L + + + + + + G+ +YS Sbjct: 259 TKMDGPSALILAPTRELAQQIEAEANKVVKFLHRPTKVVSLVGGHSVEEISYSLSHGCDI 318 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D L ++ L++ + + + M + T + Sbjct: 319 LVATPGRLIDCLESNILVLQQVRTLILDEADRMIDFGFEDQLTTILA------------- 365 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDD 434 QT+ +AT + + G + G D I +V + Sbjct: 366 --RTESVKGRQTMMFTATMSSTIERIANGYLNKPAYVRVGSQDTKAQIKQVVQYLPSEEQ 423 Query: 435 LLSEIRQRAAINER--VLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRD 491 S + + R +++ KR A+ L E RV LH +R + Sbjct: 424 RFSRLCRDVLPRFRSPIMIFINYKRTADWLAAKFSSETRYRVTTLHGSKSQEQREHSLNL 483 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 LR G+ D+++ ++ G+D+P VSLV S I IGR R +G A Sbjct: 484 LRSGKADIMIATDVAGRGIDIPNVSLVVN-----FQMCTSFEGYIHRIGRTGRAGKSGCA 538 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + + + + + N+ Q N ++ Sbjct: 539 LTFLTERDEPKVVEELFHYVKTTDTEGINDVEPAVRQKFNLGRNELQ 585 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 123/435 (28%), Gaps = 31/435 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 G+ + I + + P + + + L + Sbjct: 42 GRDIVGIAQTGTGKTAAFGLPMLAHIDPGFNAVQAIVLAPTRELAMQSATAIESFAAHMP 101 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P + D + L + + S + + + M Sbjct: 102 KVKVVTVYGGASYTPQIKGLKSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEML 161 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R A + E+ T SAT ++ + + D Sbjct: 162 RMGFAEDVETIAA---------------SMPESGKRITALFSATMPDFIQRVADQHLTDP 206 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V + V P ++ L + + +V T+ A+++ Sbjct: 207 VRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVL--ATRDEDAAIVFVRTRVDADEVAV 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + G + D+ ER I+ LR G DVLV ++ GLD+ + LV D Sbjct: 265 DMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVATDVAARGLDVERIGLVINFDVP 324 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 +E + + +GR R G+++ + + I + + ++ Sbjct: 325 RE-----TEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRLRQIEKLTGTKMEEIVIPSPRE 379 Query: 584 ITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 ++ + V + + + + R E + + + A Sbjct: 380 VSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTTEIEVEDIAAALLAHAIGDKGPSQE 439 Query: 643 MMQHAQNLEFEEAAQ 657 + A + EE Sbjct: 440 ERRGAGKIRREEEID 454 >UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammaproteobacteria RepID=RHLB_SHEAM Length = 439 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 60/443 (13%), Positives = 121/443 (27%), Gaps = 54/443 (12%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + + L E + P ++ + + +E D Sbjct: 18 DEVKQALNENGFEHCT------------------PIQALSLPVLLE----------KKDI 49 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T T + + + + ++ ++ L + Sbjct: 50 AGQAQTGTGKTLAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSK 109 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + DY+ + + V + + Sbjct: 110 HSGLKVGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADR 169 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ + + A + SAT E + + Sbjct: 170 MFDLGFIKDIRFL---------------FNRMPGAKERLNMLFSATLSMKVQELAYDHMN 214 Query: 410 DQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTE 464 D V + I+ ++D L + + + +V TK E+L Sbjct: 215 DPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENLWA 274 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 LE G RV L D+ +R++I+ E D+LV ++ GL + +VS V D Sbjct: 275 SLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLP 334 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + IGR R G ++ + + AI + + Y+ + Sbjct: 335 -----DDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIEDYIKHSIPVTSYDRDAL 389 Query: 584 ITPQGLNKKVVDILALGQNIAKT 606 I K A G+N+ Sbjct: 390 IDIPPPVKIHRKPHAGGRNLRDR 412 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 96/675 (14%), Positives = 195/675 (28%), Gaps = 102/675 (15%) Query: 17 QPEAIRRLEEG-LEDGLA--HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + +A L EG ++ G L+G + A +P +++ P+ A L Sbjct: 36 EDQAFAGLVEGHVDAGEDADPSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDL 93 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 G+++ ++ + A + + +T + S R+ + Sbjct: 94 VGDLRSWYDGDP-----------NEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHP 142 Query: 134 RD--------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + ++V V ++ + L G I ++ L Y R D Sbjct: 143 QSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVD 202 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 RG F VRG +ID+F ++ +R+E F +E++ + F + Sbjct: 203 LVMDRGEFAVRGGIIDVFVP-TEPHPVRIEFFGDEIDTIRRFHSSDQRTYGE-------- 253 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 P + + R+ + LE + G Sbjct: 254 ------PIRSVWATPCRELQLTEGIRERAQSLIGQI------PNADDLLESIANAIPQEG 301 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E+ L + + LP D ++++ + + + + T + Sbjct: 302 MESLIPAL-----VDDLEPVSSMLPRDCIVMLFDPERLRRAVDDLMKTANEFLATS--WH 354 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD---QVVRPTGLLDPI 422 P+ FE L + T N+EL K G VD + P Sbjct: 355 VAASGHGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTVDQSLPGHVQIDAVAPQ 414 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + + + + V++T + L L E G +H D Sbjct: 415 ----DLHGSGEKAEDHLGELIRKDYAVVITAAAQGTLSRLKRMLNEIG----VVHFD--- 463 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG-R 541 R + + + + D G G + Sbjct: 464 TIRSQAQDGFI----------DHAS--------KTALLTERDLTGRTSVA------AGVK 499 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AR K+I + R + ++ G N+ + L + Sbjct: 500 TAR-KRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTT-----GSGKNQATREYLVIEY 553 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 +K A P + D V + + K+++L G + + +I Sbjct: 554 APSKRNAPPDKLFIPTDQLDQVSKYIGAEI--PKLNKLGGSDWAQTKAKAKKHVHEIAQN 611 Query: 662 LHQL---RELFIAAS 673 L +L R+ + Sbjct: 612 LIRLYSARQRAKGFA 626 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 72/475 (15%), Positives = 139/475 (29%), Gaps = 41/475 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + EL D + + D LT P + + I+ Sbjct: 626 AFSKDTPWQKELEDAFPYQETA-DQLTTIDDVKADMEKPIPMDRLICGDVGFGKTEIAIR 684 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + + Q Q E G+ + SRF S + E Sbjct: 685 AAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFE--GFPVNVRAMSRFQSTKEINET--- 739 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + VV +H + + + + Sbjct: 740 -IKGLADGTVDVVIGTHKLLNPKIKFKDLGLVIIDEE--------QRFGVEAKETLKAVR 790 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRA 443 + +SATP LE + + + T D + + V D ++ IR+ Sbjct: 791 TNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRREL 850 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 +V E+ + L++ R H + + +IIRD + DVL+ Sbjct: 851 LRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDIDVLL 910 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + + AD+ G + + + +A Y Sbjct: 911 CTTIVETGLDISNANTLIVDRADRFGLSQ-----LHQLRGRVGRGRDRAYAYFL---YDP 962 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 +K + E R N G G + + D+ G + + Sbjct: 963 SKPMTEQSHERLVTIAQNTALG---SGFDVAMKDLELRGTGNLLGDEQSG-------HIE 1012 Query: 622 NVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 V D+ + + + I + + + +L E A+ D + + Sbjct: 1013 GVGFDLYVRMVSEAIEDYKDPERTEPVAVTIDLPIE-ASIPVDYIGSDKLRLEVY 1066 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 54/412 (13%), Positives = 102/412 (24%), Gaps = 16/412 (3%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A ++ + + T+ + G + G+P Sbjct: 54 AFALPLLQKVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQ 113 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L L V + + + L E L + Sbjct: 114 LEALEKGAHLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMP 173 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-----GLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT S V G + LL I Sbjct: 174 PRRQTVLFSATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRI 233 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V K +L + L G V L D++ ER ++ R V Sbjct: 234 LRHY-QPASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRV 292 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ ++ G+D+ + V D + IGR R G A+ Sbjct: 293 LIATDVAGRGIDVEALDAVINFDLPM-----QAEPYVHRIGRTGRAGRAGLAVSIVTPRD 347 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV--DILALGQNIAKTKAKGRGKSRP 616 I + ++ P+ D L + G Sbjct: 348 GRKVDDIQLATGVKLERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGAL 407 Query: 617 IVEPDNVPM-DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 E + D+ +Q + + + +I+ + +++ Sbjct: 408 TGEAGGLEATDVGKIEIQDHVAYVAVARRVSRVAFQRLSEGRIKGRRYKIER 459 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 102/345 (29%), Gaps = 15/345 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + G ++ G + L A ++V + Sbjct: 80 LVLAPTRELVSQIADGFESFGRHQ-PPSVTTIFGGVSQVHQVNALKAGVDIIVAAPGRLL 138 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 I + + L E L + T+ SAT Sbjct: 139 DLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSIATL 198 Query: 404 SGGDVVDQVVRPTGLLDPIIE-----VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + D ++ V V R + +V TL K + Sbjct: 199 AESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAMLRTPGIGQAVVFTLQKNI 258 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A ++ ++ E G LH + +R + R G VLV ++ G+D+ V+ V Sbjct: 259 ANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLVATDIAARGIDVDTVTHV 318 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D S + IGR R G AI D + + + R Q Sbjct: 319 FNHDLPSL-----PESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRDVEREIGRALIVQD 373 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + H + N + + G + K + + + + E + Sbjct: 374 DHPWHSEAAR--NSTMRPPVLGGAPAKEVKPQKKRERKVWTEEEK 416 >UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EG81_SCLS1 Length = 638 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 57/349 (16%), Positives = 100/349 (28%), Gaps = 29/349 (8%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 T ++ + L E +R RT + G + Sbjct: 233 TYVPSQDNYIKAEPLVVIVCPSRELATQIFDEARRFCYRT-MLRPCVVYGGGPLAEQLGQ 291 Query: 311 RFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P L D + L + ++ I + M + + G Sbjct: 292 LAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSSWEEELRQIMSGGDQE 351 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGL-------LDP 421 N SAT + + + D V G + Sbjct: 352 EGNINYM--------------MFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHSNIKQ 397 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I A++ L + R ++ TKR A+++ +YL + +HSD Sbjct: 398 DIIYVEAASKRKALYDLLLSI--PPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRT 455 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER + IR R G +L+ + GLD+ + V D + IGR Sbjct: 456 QREREDSIRAFRNGRMPILIATGVSARGLDVHNIMHVINFDLPSQAHGG-IEEYTHRIGR 514 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 R G A + + +A+A+ +T + P+G Sbjct: 515 TGRIGNRGLASSFYNDRNEDIAEALVKTLLETRQAVPDF-LESYLPEGF 562 >UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N623_PHYIN Length = 823 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 116/399 (29%), Gaps = 52/399 (13%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT------ 287 S + P Y+ + A + LA E +E++ + Sbjct: 405 TGSGKTAAFVIPIIAYIYSLPATMVARTGEQGPLALVMAPTRELALQIEQEAIKLCKHTS 464 Query: 288 ----QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 ++ + G + + P L D L + L++ ++V Sbjct: 465 VGLPEKMNPIKTLSVVGGQSIEDQGFRLREGVEIIIGTPGRLMDCLESHYLVLNQCNYVV 524 Query: 344 IPQIGGMYRGDRARKETLVEY--GFRLPSALDNRPLKFE---------EFEALAPQTIYV 392 + + M + V G L S + + EF+ T Sbjct: 525 LDEADRMIDMGFEPQVVAVLENMGSLLKSENEEEMEQQLTLANRAQLGEFQHRLRVTTMF 584 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + G ++ + + L+ +R + Sbjct: 585 SATMPVEVERLAKTFLRHPSIVKIGDEDSGKNKRIEQRVMFMNPGKKRSKLVEVLRDILS 644 Query: 445 ---------------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++V K+ + + +++ G R LH +R E + Sbjct: 645 AQNVPVPRSRKEKVVDGAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESL 704 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + R G D+LV ++ GLD+P+V+ V D ++ IGR R G Sbjct: 705 KMFREGYCDMLVATDVAGRGLDIPDVTHVVNFDLP-----SKIQNYSHRIGRTGRAGKDG 759 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AI + + + E E P Sbjct: 760 VAISLLTDDDEEIMYDLKQYLVSTE--MPVPSELANHPS 796 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 102/347 (29%), Gaps = 28/347 (8%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + E ++L + + G G + S P + Sbjct: 76 LVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGTPGRVE 135 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++L L + + + + + M + + + Sbjct: 136 EHLRKGYLNLDNLNTFVLDEADRMLEMG-----------------FQDAIDAVLDHAPVK 178 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSE--IRQ 441 Q + SAT + + D ++ I + +D L I Sbjct: 179 RQNLLFSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILL 238 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 E ++ TKR+ +++ + L + V LH D++ +R + + +LV Sbjct: 239 LKHQPESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILV 298 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ + V + R + IGR R G A+ ++ Sbjct: 299 ATDVAARGLDIESLDAVVNFE-----LSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMH 353 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 I E + + + ++V + G K + Sbjct: 354 NIAQIEEYMNIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLR 400 >UniRef50_A0C369 Chromosome undetermined scaffold_146, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0C369_PARTE Length = 566 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 100/312 (32%), Gaps = 14/312 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 LL L T + + G L G + + +V Sbjct: 196 ALILLPSHELAILTYELAKQYCQKFQKKGFPAIHCLLG--IGGMDMSSQLQSIRNGVHIV 253 Query: 337 VDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + D R L E L + E QT+ SAT Sbjct: 254 IGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGPRQTMLFSAT 313 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQRAAINERVLV 451 E + +VD +V G I I+ Q + L + V++ Sbjct: 314 LPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEEKLHYLLDCLKKTTPPVVI 373 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 + + +D+ EYL G V LH +R + ++ G+ DVLV ++ +GLD Sbjct: 374 FSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVATDVAAKGLD 433 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETE 569 P++ V D + S I IGR R G+A + + + S+ + Sbjct: 434 FPDIKHVINYDMP-----KDIESYIHRIGRTGRQGKTGRATTFVNRQQEESILLDLKYLL 488 Query: 570 RRREKQQKYNEE 581 +++ E Sbjct: 489 VESKQKIPQFLE 500 >UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DML6_9BACT Length = 542 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 111/393 (28%), Gaps = 35/393 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I H+V + V+A LA L + + L + Sbjct: 160 QTGTGKTAAFLISMYNHFVNNPQTEVKAGTPRALILA--PTRELALQIGADAEGLGKYCD 217 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 +E G + P L DY + + + + I + M Sbjct: 218 IRVETF-FGGMDFDKQAQILRGRVDIAVATPGRLMDYHRRKMINLREVEFLCIDEADRML 276 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-- 409 + T SAT L + + Sbjct: 277 DMGFIPDVRKIVGYLPGRD---------------KRITQLYSATLNQSVLNLAASWLNEK 321 Query: 410 ------DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + + +D + + + +L ++ +R+++ K E L Sbjct: 322 YEKVEINPETIVSKNVDQKVYTVTANQKENVILWHLKNE--EVKRMIIFANRKFDCERLA 379 Query: 464 EYLEEHGER-VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L ++G + L D+ +RM I+ + R G+ VLV ++ G+ + +VS V + Sbjct: 380 DKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQVLVATDVAGRGIHVDDVSHVVNYE 439 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + +GR R GKAI + D+ + I + + E Sbjct: 440 LP-----YEPEDYVHRVGRTGRASALGKAISFADENSGFELPEIECYIEMQLPAEVPLEG 494 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + G N G Sbjct: 495 MTDDHDKKHSERKFAQKRGGNKHSGNRNKGGSR 527 >UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Acidaminococcus RepID=D2RII4_ACIFE Length = 417 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 114/406 (28%), Gaps = 44/406 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 V F I +E + + ELA + + + R Sbjct: 48 QTGVGKTLSFVIPLFDKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLT--- 104 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G E + P L D+L + ++ + ++ M Sbjct: 105 ------VSGGRDFEEEKRKIGHRAQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEML 158 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R + QT+ SAT + + Sbjct: 159 RQGFGEDIETL-----------------LSLMPQPHQTMMCSATLDEEVRKLGRQLTTNP 201 Query: 412 VVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 +V + I + D L S IR+ +LV +K A +L++ Sbjct: 202 LVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRY--NPFLMLVFCCSKERAIELSD 259 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L G V LH D+ +R +++ + R + +LV ++ GLD+ ++ V D Sbjct: 260 WLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIAARGLDVEGITQVVNYDIP 319 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + IGR R + G AI + + + + ++Q G Sbjct: 320 H-----DPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKLDITLERQ---NLAG 371 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 T + K V K+ + E Sbjct: 372 ETVRRTVKPVRPKKKRVPKRGKSAVGPNKRGTKYAEASRKQKRKEK 417 >UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota RepID=B7G1B9_PHATR Length = 462 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 110/365 (30%), Gaps = 25/365 (6%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL--EEQRLTQRTQ 291 S P HY+ V LA E + E Q+L R + Sbjct: 85 TGSGKTVAFGVPLCHYLLNLPSRVLESVADAGPLALVMAPTRELALQIDGEFQKLLSRQR 144 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + P + + + +++ ++ + + M Sbjct: 145 LIRTVGIVGGQQIQQQAQELRRGVHIVVGTPGRINECIDMAYMVLNQCCYIVLDEADRMI 204 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--------LAPQTIYVSATPGNYELEK 403 A + + +N +++ + T SAT Sbjct: 205 DMGFAPQIETILDACGGSLKSENEAETYQQEKEDLQKADVARHRLTAMFSATMPPEVERI 264 Query: 404 SGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTL 454 + + + G ++ I +Q + +L +++ R + E+++V Sbjct: 265 AKRYLRHPAIVSVGDKDSGKNARIEQRIMFLASVSQKEKVLREQLQDRRFLREKIIVFVN 324 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 K+ AE + +E G LH +R E + R G VLV ++ GLD+P+ Sbjct: 325 EKKHAEGVGRMVERSGRACVVLHGGKTQEQREENLETFRRGNV-VLVATDVAGRGLDIPD 383 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V+ V D RS + IGR R G A + + + Sbjct: 384 VAHVINYDLP----TRSIENYTHRIGRTGRAGKEGVATSFITDEDEGIMAPLKAYLESTG 439 Query: 574 KQQKY 578 + Sbjct: 440 NRVPE 444 >UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteobacteria RepID=RHLB_SHEWM Length = 441 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 112/396 (28%), Gaps = 32/396 (8%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + H + L + L + Sbjct: 52 QAQTGTGKTLAFLVATFDHL-LSTPVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKH 110 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + G ++ + DY+ + + V + + Sbjct: 111 TG-LKVGIVYGGESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADR 169 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ + + +A + + SAT E + + Sbjct: 170 MFDLGFIKDIRFL---------------FRRMPDAKSRLNMLFSATLSMKVQELAYDHMN 214 Query: 410 DQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTE 464 + + I+ +D+ + + + + +V + TK E++ Sbjct: 215 EPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPEKAIVFSNTKHSCENVWS 274 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +LE G RV L D+ +R+ I+ G+ D+LV ++ GL + +VS V D Sbjct: 275 WLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDVSHVYNYDLP 334 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE-- 581 + IGR R G ++ + + AI E Y+ E Sbjct: 335 -----DDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNLPAIEEYITHSIPVTNYDSEGL 389 Query: 582 --HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 P +++K + G+N + G Sbjct: 390 LDDIPAPIRVHRKHNNRPQQGRNNSGRPQGRNGNRA 425 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 202/656 (30%), Gaps = 88/656 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 A++ + + L ++ S + +A+ + +++ N Sbjct: 2 DILLKELYNNVAVKSILKKESK------LGNLSLSEEALIVASAFQKQPQTMLIVKNNTY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY + E + ++ + + + + ++ Sbjct: 56 TAQRLYERLYSLLGE--------------KVLFFGVEESLRVEAIAASPETKANQMEVLS 101 Query: 129 AMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +VV + +A I+ L P+++ + + + + + L E Y + Sbjct: 102 KLFDNKPYIVVMNAAASIHYLPAPEVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q + RG +ID++ + LR+E FD E++ + FD T + + I +I P + Sbjct: 162 DQPLCYAARGGIIDVYSMNYE-YPLRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E I + ELA + + + LE DL+ + + + Sbjct: 221 DILFTNEEIQTITQLALAELANVKGFTNASKEHLEAIV-----NEDLDAIANHSPEARLY 275 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA-RKETLVEYGF 366 Y FL+ + T+ DY+ ++V I + A +E E Sbjct: 276 KYRAFLNQQA------TIMDYVKNACVIVS-SEEEVKDSIKHAAEENIAYIQEMYQEANG 328 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQVVRPTGLLDPIIE 424 L ++ K + + ++V + + + GD+ L+ ++ Sbjct: 329 LLKFSMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDIN---------LERTMD 379 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + D +L + + + + E L+E + Sbjct: 380 QLITQSHSDKVLLCLDE---------------SEIKRVRELLDEKNVS----------YQ 414 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R+E L+ G +L + L EG + + S A Sbjct: 415 RVEETDTLKNG-ISIL--HHRLIEGFTCISEQIHVYTGKELFQSKHSISRYSNKFKEAE- 470 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + KY G++K + I G ++ Sbjct: 471 ----------VLHDYQELNVGDYVVHHQHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVL 520 Query: 605 KTKAKGRGKSRPIVEPDN---VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + R V + + ++ ++ + Q AQ L A++ Sbjct: 521 LVPLEQFQLIRKFVSKEGAVPKLNKLGSGEWEKTKRKVSEKIAQLAQRLVHLYASR 576 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 57/423 (13%), Positives = 120/423 (28%), Gaps = 35/423 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + + A Q + Sbjct: 614 KQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHYKTFTRR 673 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++ P + + + A + ++ +H + + Sbjct: 674 FENYPV------RIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP L+ S + T Sbjct: 728 VIDEE--------QRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNT 779 Query: 417 GLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR- 474 + + V + ++ EI + A N +V + ++ L E V Sbjct: 780 PPQNRMPVQTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEI 839 Query: 475 -YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + + +++ + VLV ++ G+D+P + + I +AD G + Sbjct: 840 GVAHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ--- 896 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + Y + S + + E +R K K + G G + Sbjct: 897 -LYQIKGRVGRSDR---LAYAYLM-YSPQRQLSEIAMKRLKSIKEFTQLG---SGYKIAM 948 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G + D V +DM + L I E +G+ + + L Sbjct: 949 RDLTIRGAGDMLGPQQAGF-------IDTVGIDMYIEMLNDAIMEEKGIKKEVKKELAKA 1001 Query: 654 EAA 656 Sbjct: 1002 NVK 1004 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 92/664 (13%), Positives = 194/664 (29%), Gaps = 95/664 (14%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S+ + L E L+ H L G+ K ++++ L++ +V+ Sbjct: 41 SSILRHLQTLPLSKDLREKLQK-RGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLE 99 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A + +++ +Q + P+S+ + + ++ Sbjct: 100 EAGRWTAQLELMG--------------WQTVNFYPTSEASPYDPGRLESEMVWGQMQVLA 145 Query: 129 AMLER---RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +++ + +VA+ A+ P + L L G +D +++ LA L Y R Sbjct: 146 ELIQGHQVKGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERG 205 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 G + RG+++DIFP S ++ +R+E F +E+E++ FDP + + + + Sbjct: 206 STVETEGQWSRRGDIVDIFPV-SAELPVRLEWFGDELEKIREFDPASQRSLDDLTG---- 260 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 V Q +E A E+ + + Sbjct: 261 ----LVLTPTSFDQVIEPALNAQAIDLSAWGEDAETEQLF-------------------- 296 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G E RFL P L DYLP + + V+DE + L Sbjct: 297 GKEGLQRFLG--LAFTEPACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDWSALQL- 353 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 L + Q I +S + + Sbjct: 354 --PNLPQLHRNFSALGDRLKTDFQYITLSEIHEANGDSL---------DISARPIPTMPH 402 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS------ 478 ++ EI + + + L+EH V+++ + Sbjct: 403 QFAKLAEILRGKREIYSGLTLGQYSTWLISAQPS--RTVSLLQEHDCAVQFIANPRDYPA 460 Query: 479 -DIDTVERMEIIRDLRLGEFDVLVGINLLR-EGLDMPEVSLVAILDADKEGFLRSERSLI 536 + ++R + L EG +P LV + D + G Sbjct: 461 IEKSQIQRTAVTLKY----------SGLAELEGFILPTFRLVLVTDRELFGQHALATPEY 510 Query: 537 QTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN-KKVVD 595 R A + + + + K+ + + + + D Sbjct: 511 VRKRRRATSKQ---------VDINKLSPGDYVVHKSHGIGKFLKLDALANREYLMIQYAD 561 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + + + R M K + +++ + + A +L A Sbjct: 562 GILRVPADSL---DSLSRFRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYA 618 Query: 656 AQIR 659 + + Sbjct: 619 KRAK 622 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 120/437 (27%), Gaps = 39/437 (8%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEEL-AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 P V + ++ A Q E Sbjct: 664 DRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYP 723 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 G+ N R + L + L +V + + + Sbjct: 724 ITIGLLNRFRT------ASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEE 777 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 + + + ++ATP L S + + + T Sbjct: 778 --------QRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSR 829 Query: 422 IIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HS 478 ++ +++ IR +V E+L L + R H Sbjct: 830 RPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHG 889 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++ E + GE D+LV ++ GLD+P V+ + + DA K G + L Q Sbjct: 890 QMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQ----LYQL 945 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR R+ K + E R R + + + G G D+ Sbjct: 946 RGRVGRSGIQAHAWLLYPNQ----KQLTEKARLRLRALQEFSQLG---SGYQLATRDMEI 998 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---A 655 G + + + + + + LQ I E++G + ++ + + A Sbjct: 999 RGVGNLLGAEQSG-------QMEAIGYEFYMEMLQDAIKEIQGQEIPKVEDTQIDLPLTA 1051 Query: 656 AQIRDQLHQLRELFIAA 672 D + L E A Sbjct: 1052 FIPSDYIPDLEEKMAAY 1068 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 60/388 (15%), Positives = 116/388 (29%), Gaps = 26/388 (6%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ ++ LT + L++ +EL + + G Sbjct: 63 TGKTAAYGLPCLNRIKVEDGMQVLVLTPTRELALQVSDELFKLGK--HLGIKTTTIYGGS 120 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR-KETLVEYGFRLPSALDNRPLKF 379 + + V + + G + L E L + Sbjct: 121 SYSKQITQVAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESI 180 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQV 432 QT+ SAT + + ++ + + A + Sbjct: 181 FNLLPTKRQTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAERE 240 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++ + + ++ T TK+ A+DL L G V LH D++ +R ++++ L Sbjct: 241 IAVVRIL--DYENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSL 298 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 G +LV ++ GLD+ ++SLV S IGR R +GKA+ Sbjct: 299 HDGRVKILVATDVAARGLDVKDLSLVINYHLPF-----DSESYTHRIGRTGRAGKSGKAV 353 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYN---EEHGITPQGLNKKVVDILALGQNIAKTKA 608 + T E H + KKVVD A + Sbjct: 354 TLVTTRESRALLRLKGTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTEIHADAEAVLE- 412 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKI 636 K + + ++ + + K L Sbjct: 413 ----KLLKLEDKRSIALKLLSKMLDNTK 436 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 89/644 (13%), Positives = 199/644 (30%), Gaps = 54/644 (8%) Query: 24 LEEGLEDGLAHQTLLGV-TGSGKTFTIANVIAD--LQRPTMVLAPNKTLAAQLYGEMKEF 80 LE E + G + + ++ + P +V+ + A L ++ F Sbjct: 14 LERAFETTRGKIQVTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFF 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P +P+ D N + R+ + + + Sbjct: 74 DPSRQSH-------------ILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFI 120 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 +SV A+ P + + G + + + L Y +G F VRG Sbjct: 121 SSVDALMQKTLPVKILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGG 179 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DI+P +++ +R++LF ++VE L F + I F + P + E + Sbjct: 180 IVDIYPP-TENQPVRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHER 238 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ ++ L R+ E + L L GIE + G Sbjct: 239 LLQRVRASLEGRKVDKAEAEETLRSLVLK-------------NAFPGIEFLLPYFYGEL- 284 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P D+ P L + M+ +A T + R + Sbjct: 285 -ATPA---DHFPGALNLWFLDPVEISRCADEMWAELKADHRTSDAHVIRPELEDIYVNFE 340 Query: 379 FEEFEALAPQTIYVSA-TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + + Q + S + S + + + L + + + Sbjct: 341 ALAYPLNSRQVYFSSLEYFDEENSDDSRVEYRTAMTQDFTNLA-LANAVGTEQWLQAATN 399 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + R+ V+T + + L+ E+ + SD R + + E Sbjct: 400 KLHRWRDEGYRIFVSTKNQSHIDRLSLVFEKLELKAVRTSSD---EYRWDSWLQEQDREQ 456 Query: 498 DVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 +++ + L E L + E ++ + D D G + + G K + +GD Sbjct: 457 NIVHIVPRYLAESLRLEEEKIIFLRDEDFYGKKQRAKES---SGAQDFQKQAKRLSFGDL 513 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + E + N G+ + + + ++ G+ + Sbjct: 514 KPGDLVVHTKHGIGQYEGLKIMNI------SGVESEYIQVGYKDKDKLYLPVYRVGQLQK 567 Query: 617 IVEP-DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 ++ + A ++ +++ + A +L A + Sbjct: 568 FSGAGTSILDKLGGTAWEKTKAKVKSHVRDIAADLLTLYAKRAE 611 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 63/434 (14%), Positives = 132/434 (30%), Gaps = 39/434 (8%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P V + ++ A + Q + + G+ Sbjct: 653 TKPMDRLVCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFETFKKRFE--GW 710 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 I +RF++ + L + ++ +H + + Sbjct: 711 PVDIRVLNRFVTPAEVKKT----LQDLKDGKVDLIVGTHKLLGSSIAYKDLGLLIIDEEQ 766 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 ++G + + + T+ +SATP L + + D + T +D + Sbjct: 767 KFGVT--------HKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRL 818 Query: 423 IEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSD 479 V + + I + +V L + + + R H Sbjct: 819 PTRTFVTKFDPETIRKAITAEISRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQ 878 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 ++ E + + E DVLV ++ G+D+P + + I A G + L Q Sbjct: 879 MEEHELEKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQ----LYQLR 934 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ Y + P K + + ++ R K + N G G+ D+ Sbjct: 935 GRVGRSKTR---AYCYLMMPRNHK-LDKEQQERLKIIQENTALG---SGIKIAQYDLELR 987 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAA 656 G + + ++V +M L + + E +G ++ L + A Sbjct: 988 GSGNILGEEQSG-------HVNSVGYEMYMDLLNEALAEAKGESVEDMDLDPELNLKIPA 1040 Query: 657 QIRD-QLHQLRELF 669 I D + +R Sbjct: 1041 LIPDAYIKDIRIRL 1054 >UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminococcaceae RepID=C7H231_9FIRM Length = 395 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 95/339 (28%), Gaps = 12/339 (3%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ K + + T+ + + E ++ G Sbjct: 49 TGKTCAFGIPVAEHIDPEKKYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGA 108 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV + + L E L Sbjct: 109 NMEKQARRLAEGCQIVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHI 168 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLL 436 E SAT ++ + + P I + T + L Sbjct: 169 IELMKARKSLSMFSATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKL 228 Query: 437 SEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 S++ Q +RV+V TK L L G V LH D+ ER +I+++ R Sbjct: 229 SDLAQIIIGEGYKRVMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRD 288 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +LV ++ G+D+ +V V D + IGR R G + L+ Sbjct: 289 GRLAILVATDVAARGIDVSDVDAVINYDVPGDN-----EHYTHRIGRTGRAKKEGVSYLF 343 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + + R + + + + KK Sbjct: 344 YVPEEKKRVQELLRLTRNTDLCTPVHFDFNHERIVVEKK 382 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 111/370 (30%), Gaps = 29/370 (7%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E++ F + + V + + + P + V I + L Sbjct: 32 EKVIPFLLSSERDVIALAQTGTGKTAAFGLPIIQKVNFDLSIPQAFILCPTRELCVQITR 91 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + R ++ + G + S P + D + L + + Sbjct: 92 DFYRFSKFLSTIKIISLYGGVSIDSQIKSLQNKTHIIIGTPGRIIDLIKRKKLHLEKIKY 151 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + + + M + + Q++ SAT Y Sbjct: 152 LILDEADEMLNMGFKEELD-----------------YIVKMLPKNRQSLLFSATMSKYMN 194 Query: 402 EKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINERV--LVTTLT 455 + + D V G + + + + ++ S +++ IN + ++ T Sbjct: 195 AIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVDINPGIYGIIFCET 254 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ +++ EYL + G L+ D+ +R ++ R LV ++ GLD+ + Sbjct: 255 KKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVATDVAARGLDVHNI 314 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + V + + I GR R +G ++ K + + + Sbjct: 315 THVINYNLP-----KESDIYIHRSGRTGRAGNSGISVCIIHSKETRNLKEFEKRIGKSFE 369 Query: 575 QQKYNEEHGI 584 + I Sbjct: 370 RVMVPNGKEI 379 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 47/349 (13%), Positives = 96/349 (27%), Gaps = 17/349 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + L R + T+ Sbjct: 27 IQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELA 86 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRG 353 + + R G L +++ + Sbjct: 87 AQVAISVEIYSTQLNIRSF-AVYGGVRIEPQIAQLQEGVDVLIATPGRLLDLYEQRALHF 145 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + E L + + + + QT+ SAT + + Sbjct: 146 ENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLFSATFSKQIKHFAREMLNAPKT 205 Query: 414 RPTGLLDPIIEVR-------PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 ++ +++ A + L+ I+Q + LV TKR A+ L L Sbjct: 206 IEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQQH--RWSQTLVFIRTKRTADALVTEL 263 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E+ G +H++ R + + + GE VLV ++ G+D+ ++ V D Sbjct: 264 EDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVATDIAARGIDVSQLPCVVNYDLP-- 321 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + IGR R G AI S +++ + K Sbjct: 322 ---YVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSLERYLDQHLK 367 >UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccharomyceta RepID=RRP3_YEAST Length = 501 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 58/377 (15%), Positives = 121/377 (32%), Gaps = 21/377 (5%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A L +++ + T+ + + E G R G Sbjct: 134 AFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 D + +++ + + + + + + E L + + Sbjct: 194 RDLMRKPHIII-ATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKII 252 Query: 384 ALA-PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDL 435 T SAT + + + + V ++ V P + L Sbjct: 253 PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYL 312 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + + +++ T TK AE L+ LH D++ +RM + + G Sbjct: 313 IYLLNEFI--GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAG 370 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + +LV ++ GLD+P V +V D +S I +GR AR GK+I Sbjct: 371 KRSILVATDVAARGLDIPSVDIVVNYDIPV-----DSKSYIHRVGRTARAGRSGKSISLV 425 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGIT-PQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + I E ++ ++ ++ +T ++K +++ K K Sbjct: 426 SQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGK- 484 Query: 614 SRPIVEPDNVPMDMSPK 630 R MDM + Sbjct: 485 GRRGRMMTRENMDMGER 501 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 92/322 (28%), Gaps = 14/322 (4%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L + L + ++ +EL + G L Sbjct: 106 IQELGSPCEHPGALVLVPTRELAAQVASELSSLRI--QKIPRIHTVYGGVSIAEQLRNLE 163 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 G ++V + I I R L E L + Sbjct: 164 QGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARV 223 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRAA-- 444 + SAT L + + V P+IE + D + + + Sbjct: 224 LMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVS 283 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 N LV TK A+ + + L+E V LH DI +R +I+ R +LV + Sbjct: 284 DNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATD 343 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + G+D+ ++ V + +GR R + G AI + + Sbjct: 344 VAARGIDIEGITHVVNYSIPH-----DSATYTHRVGRTGRAGSQGIAISFVRPHETRRME 398 Query: 564 AIGETERRREKQQKYNEEHGIT 585 + + K I Sbjct: 399 YLSKHCNGELKASTVPLVEHIL 420 >UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Piroplasmida RepID=Q4MYL1_THEPA Length = 707 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 103/363 (28%), Gaps = 43/363 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++ F + H + L L E + R Sbjct: 362 VSQTGSGKTLTFLLPGLLHLLAQPP----VGTGGPIMLILSPTRELCLQIAEEARPY-SR 416 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + P L ++L + + S+ + + Sbjct: 417 LLNLRLVPIYGGASKFAQVRELQNGAEIMVATPGRLLEFLSNGTIKLNRVSYFVMDEADR 476 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + K QT+ SAT + + Sbjct: 477 MLD-----------------MGFEPQIRKIVGQIRPDRQTLMFSATWPSEIKRLASEFCK 519 Query: 410 -DQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + G + +E D L + ++VL+ + K A+ Sbjct: 520 ANSIYIQVGDLELTANPNIRQNVEFPNSYEVRDKLFDFLGS-IPPEKKVLIFSDLKSFAD 578 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 LT L + LH + +R I+ R G+ +VLV ++ GLD+ ++ V Sbjct: 579 QLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVLVATDVAARGLDIKDIDYVIN 638 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-----DKITPSMAKAIGETERRREK 574 LD +S I IGR R G+++LY A+ + + + + Sbjct: 639 LDVP-----KSLLDYIHRIGRTGRGNSKGESLLYFPIDTLTPAKVKFAQDLSKLLSKVNQ 693 Query: 575 QQK 577 Sbjct: 694 TVP 696 >UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=Cryptosporidium RepID=Q5CWY8_CRYPV Length = 480 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 63/361 (17%), Positives = 112/361 (31%), Gaps = 31/361 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 Y+ P ++ + L L + E + + + Sbjct: 139 KTLCYILPILGRLKNDKVYCANLILSPTRELAQQIVREIKIILDIHGKKY-RCRYISGKI 197 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 S P L D + + + S + + ++ + A + + Sbjct: 198 DKAQESNTKRLDIAVSTPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILS 257 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----D 420 +P Q SAT + + + V G Sbjct: 258 HSNIPKGG-------------KVQIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASS 304 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 II+ T+ D + +RQ + LV T +K A+ L + L V +H Sbjct: 305 TIIQELVCVTKDDAKIESLRQLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIH 364 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 SD+ V+R II+ R G+ +L+ +L+ G+D VS V D F S + I Sbjct: 365 SDMPKVKRDNIIQRFRTGKIWILICTDLMARGVDFKNVSCVVNYD-----FPHSPSNYIH 419 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK----YNEEHGITPQGLNKK 592 +GR R G AI + K+I + + + + I KK Sbjct: 420 RVGRCGRAGRTGYAITFFTLRDIPKIKSIAKVIKSSGADVPSWMLKVKLNNIKKSHFKKK 479 Query: 593 V 593 + Sbjct: 480 I 480 >UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54T87_DICDI Length = 586 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 99/348 (28%), Gaps = 41/348 (11%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEE-QRLTQRTQFDLEMMNELGYCSGIEN 308 + + + L E + +EE + + R ++ G ++ Sbjct: 169 LLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQS 228 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P L D L + ++ + + M + + Sbjct: 229 RILRNGVDIVIGTPGRLNDLLRKHH--LSSVQYLVLDEADRMLDMGFMPQIESLID---- 282 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------ 422 QT+ SAT + + D + G + Sbjct: 283 -------------QIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVT 329 Query: 423 -----IEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE-EHGERVR 474 I+ D + EI + + V+V K +D YL + + Sbjct: 330 QHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYLSTQKNVKSI 389 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LHS D R ++ R +L+ ++ GLD+P V V + Sbjct: 390 VLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLP-----GNIED 444 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + IGR R G A Y TP+ + + + +R ++ E Sbjct: 445 YVHRIGRTGRAGKTGDAWSYVTTQTPN-LRDLVKILQRTNQKIPDFLE 491 >UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UPZ2_MONBE Length = 591 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 108/382 (28%), Gaps = 34/382 (8%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + P + R L L + E + Sbjct: 44 RTGEGKTLSFALPIIELLLKEGR--NGRGRAPRALCMAPTRELAHQVGKEFADIGPS--- 98 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + + P L D+L L + D ++ + + M Sbjct: 99 LASTCVYGGAPYMPQESAIRRGLDVIIGTPGRLKDHLDKGTLKLTDIKYLILDEADRMLE 158 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + PQ I SAT ++ L + + V Sbjct: 159 QGFVEAIDEI-------------QKMTIAQSGGKPQMILFSATMPDFILSTVKNYMPNHV 205 Query: 413 VRPT---------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 T +D + P + + ++ + + R ++ T TK+ A +L Sbjct: 206 TVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTIIFTQTKKDANELA 265 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + + V+ LH DI +R ++ R G+ LV ++ GLD+PEV LV + Sbjct: 266 LE-TDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAARGLDIPEVDLVVQCEP 324 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + S I GR R G I + + + ++ + Sbjct: 325 P-----KDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGISFRRIGAPQPE 379 Query: 583 GITPQGLNKKVVDILALGQNIA 604 + + A+ ++ Sbjct: 380 DVIKASARDAFRSLEAINDSVL 401 >UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=Embryophyta RepID=RH24_ARATH Length = 760 Score = 198 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 98/333 (29%), Gaps = 17/333 (5%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + L+ ++ + ++ E S Y +S G F L Sbjct: 291 MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKA--YGLRVSAVYGGMSKHEQFKEL 348 Query: 330 PADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 A +VV I + RA L E + + Q Sbjct: 349 KAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQ 408 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT + + + D + G + ++ V P + L E Sbjct: 409 TLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLP 468 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 VLV K +++ L + +V LH D D RME ++ + G VL+ Sbjct: 469 GMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLI 528 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITP 559 ++ GLD+ + V D + + IGR R +G A + Sbjct: 529 ATDVAARGLDIKSLKTVVNYDI-----AKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREA 583 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 A + + + G K Sbjct: 584 RFAGELVNSLVAAGQNVPPELTDLAMKDGRFKS 616 >UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C8J5_THAPS Length = 663 Score = 198 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 91/302 (30%), Gaps = 30/302 (9%) Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 +++ R P L D+L + + ++ + + M Sbjct: 333 QLLIGGESARDQLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLDLG 392 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 D + QTI SAT + + +V VV Sbjct: 393 -----------------FDEEVGEIMNHFHHQRQTILYSATFPKKFQDFAKQTLVRPVVV 435 Query: 415 PTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G +I+ Q ++ + V++ K +D+ EYL G Sbjct: 436 NVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVVIFCEKKGDVDDIHEYLLLKG 495 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D ER E I + G+ DVLV ++ +GLD ++ V D E Sbjct: 496 VEAVSIHGGKDQEERNEAIALYKAGKKDVLVATDIAAKGLDFADIQHVINFDMPSE---- 551 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + + IGR R G A + +K + + + ++ I Sbjct: 552 -IENYVHRIGRTGRCGKTGVATTFINKSCEETTLLDLKHLLKEAHQRI--PPVLMIMDDP 608 Query: 589 LN 590 Sbjct: 609 FE 610 >UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aquificaceae RepID=B4U778_HYDS0 Length = 364 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 95/317 (29%), Gaps = 15/317 (4%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A L+ K + + T+ + E Y G Sbjct: 48 TGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKYKRLSS-YVFYGGT 106 Query: 321 PPPTLFDYLPADGL-LVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLK 378 D L + +++ I + L E+ L Sbjct: 107 SVKQNLDILQNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEY 166 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQVD---D 434 F T SAT + + + D ++ + ++ + Sbjct: 167 IISFLPKERTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGE 226 Query: 435 LLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + E+ + E++L+ TK+ A+DL L + G R + LH D+ +R + + Sbjct: 227 KIHELMHIIDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAF 286 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G +L+ ++ GLD+ +V +V + I IGR R +GKA Sbjct: 287 KSGAVSILIATDVAARGLDIKDVGVVINYNIP-----EDPELYIHRIGRTGRIGKSGKAF 341 Query: 552 LYGDKITPSMAKAIGET 568 I + Sbjct: 342 SLICPEDSKALWRIKKL 358 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 76/664 (11%), Positives = 189/664 (28%), Gaps = 117/664 (17%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + Q + ++R+ + L + + S + ++ + ++++ + Sbjct: 2 LYAKIEEILAQSKFMQRVLK-LPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 +A ++ ++ + Y+P + ++ S + I R+ Sbjct: 61 DIIAEDIWDDLCVLIGKENAH-------------YLPDYEILPYEERSPHYSIRATRMET 107 Query: 127 -TKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARN 184 + + + S A+ +L + +LHL GM + +L L ++ Y Sbjct: 108 FLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQ 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Q + RG +IDIF +R+E + +E+ + +F T + + Sbjct: 168 YQVSKVFQAAKRGGIIDIFSPPL-TNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTI 226 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 ++ + + + G+ Sbjct: 227 LPARELSLSD--------------------------------VDSGSPIIAKIRNQGFFE 254 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDR-ARKETLV 362 GIENY L T DY + +LV + + + ++ ++ Sbjct: 255 GIENYYALLCNELQ-----TFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEAK 309 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 G + ++ L ++ + + +EL ++ Sbjct: 310 IQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMRAP----------F 359 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + L + R + ++ + A+ + + + Sbjct: 360 ASQPNFESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSI---------------- 403 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 G+ +L EG + + L D + +S R Sbjct: 404 ------------GKIPFTEFFGVLHEGFSLEDCHLNLWTDHEIFNRYKSRRY-------T 444 Query: 543 ARNVNG-KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G + Y D I E GL +D + Sbjct: 445 PRYAPGETIVNYEDLKPGDYVVHIDHGIGVFE--------------GLKIIRLDGSD-VE 489 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + A P + V ++ ++ + +++L + + ++ I Sbjct: 490 CLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLGSSKWNNTKRKAAQQIELIAAD 549 Query: 662 LHQL 665 + +L Sbjct: 550 IVKL 553 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 58/447 (12%), Positives = 125/447 (27%), Gaps = 49/447 (10%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + I+ A + Q + E Sbjct: 595 KEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYRVFRER 654 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + S L + + + +H + + + Sbjct: 655 LAQYPV------KIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLL 708 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + R + T+Y+SATP L + + + + T Sbjct: 709 IIDEE--------HRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQT 760 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + + + +++ IR+ +V + E + L +VR+ Sbjct: 761 SPKERLPVRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRF 820 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H+ + + ++ D E+ VL+ ++ G+D+P + + I +A+ G + Sbjct: 821 IVGHAQMPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQ--- 877 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ +A Y K R+R + ++ G + Sbjct: 878 -LYQMRGRVGRSNR-RAYAYLLIS-----KGTTTVARKRLEAL---TQYDYLGAGFQVAL 927 Query: 594 VDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG---------LM 643 D+ G I TK G + + + L I +E Sbjct: 928 RDLELRGAGTILGTKQSGI--------IQAIGFNYYNRILANAIQAVEKGETIKLFNDES 979 Query: 644 MQHAQNLEFEEAAQ-IRDQLHQLRELF 669 + + E D + E Sbjct: 980 PDTRRKVRTEIDLYFPPDYIDDDEERL 1006 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 106/385 (27%), Gaps = 30/385 (7%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 S P + ++ L L + + + + Sbjct: 54 TGSGKTAAFSLPILQKIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDK 113 Query: 294 LEMMNE-LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 ++ + G + + P L D + ++ + + + + + M Sbjct: 114 IKTVAVFGGVSVNPQMLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLS 173 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 K QT+ SAT + S + D V Sbjct: 174 LG-----------------FTEELNKILALLPEKKQTLLFSATFPDKVTTLSQHLLRDPV 216 Query: 413 VRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEH 469 + + R + + + + ++ + L+ K L + L + Sbjct: 217 EVQLQSAEASTLVQRVFSVNKGEKTAVLAHLIKQHQWRQTLIFVNAKNACNHLAQKLSKR 276 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G H D R ++ + GE VL+ ++ GLD+ ++ +V D Sbjct: 277 GITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATDIAARGLDIEKLPVVINFDLP----- 331 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER---RREKQQKYNEEHGIT 585 RS + IGR+ R G + D K I + + RE+ + + E + Sbjct: 332 RSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFKVIEKKNKFQLEREQVEGFEVEDDQS 391 Query: 586 PQGLNKKVVDILALGQNIAKTKAKG 610 G K K Sbjct: 392 EAYFLPMKPRAKPAGTGKKKKKRNQ 416 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 103/348 (29%), Gaps = 30/348 (8%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + P + + + L L E + L + + + G + Sbjct: 66 FGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQI 125 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + P L D++ + + V + + M Sbjct: 126 TTLKKHPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIH----------- 174 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIE 424 + + SAT ++ S D V + I + Sbjct: 175 ------DVTRILDQIKSRKNLGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQ 228 Query: 425 VRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 R D L + R + TK M + L+ L+ G + +H DI Sbjct: 229 YRIDLEGRGDKLETMVALLTHGGYERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQ 288 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 R + ++ R G+ VLV ++ GLD+ +V +V D I IGR Sbjct: 289 RIREKTLQAFREGKMRVLVATDVAARGLDIDDVDVVFNYDVP-----DEIEYYIHRIGRT 343 Query: 543 ARNVN-GKAILYGDKITPSM-AKAIGETERRREKQQKYNEEHGITPQG 588 R G A IT M + I + + KY+++ + P Sbjct: 344 GRAKRHGVAYSLVVGITEQMKMEQIAKNTKADITVLKYDKDGCLLPAD 391 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 103/707 (14%), Positives = 201/707 (28%), Gaps = 99/707 (14%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-----IADLQRPTM 61 L F P+ +Q I + ++ L + + +A++ R + Sbjct: 39 LTDIFTPTNEQLFPIDKAQKRW--------LYPAYAAAGSLWLASLSDCPVANVANRLKV 90 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ ++ Q+ E+ + V P +T + S ++ I Sbjct: 91 VVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYDELSPHQDIVS 135 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R++ M + +++ S+ + P + L+VG I D LA Sbjct: 136 ERINLLTDM--PKQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAG 193 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y D F+ G F VRG VIDIF LR++LFD E+E + F+P T + +ST Sbjct: 194 YRAVDNVFEPGEFAVRGSVIDIFAMG-QPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTL 252 Query: 241 F----------------TIYPKTHYVTPRERIVQAMEEIKEELAARRK-----VLLENNK 279 + + + + + + A NN Sbjct: 253 MDLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNF 312 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ R + + SG+E Y LF Y P D L ++ Sbjct: 313 AAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFPKDTLFII-- 370 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + D + R + + + Sbjct: 371 -----DENTAEAQADYWSQIQRRYEERRHDIDKPIVEPTLLYLPSNSLNEMLN--AYPRV 423 Query: 400 ELEKSGGDVVDQVVR-PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE----------- 447 L +S D L + PV+ Q + L E+ A+ Sbjct: 424 ILSQSDLAAADNTQSGKVKLPALMPPELPVSHQKAEPLLELLNYASAGWDDNTTEAALAR 483 Query: 448 RVLVTTLTKRMAEDLTEYLE-EHGERV-----RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +LV T E L E + + ++L S++ ++ + V + Sbjct: 484 PILVVAETAGRREILLELFRGKLNVQTFDSLQQFLGSELYQQSLIKNTASASNTKPTVGL 543 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 I + G + + L I + G + ++ + + S Sbjct: 544 TIAPIERGAVI-DQHLSIISETQLFGRQVLQTR---RRRQSDVSEEFLVKSVTELTEGSP 599 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 I + R + G + I A P+ Sbjct: 600 VVHIDQGIGRYHGLITLDIGEGEQ---------------EFIHLKYADDASIYVPVANLQ 644 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + +H++ A+ E+ + +L ++ Sbjct: 645 LISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQAR 691 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 129/437 (29%), Gaps = 43/437 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + + Sbjct: 738 PMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLAGQHEDNFKDRFAD----- 792 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS G + + + L A + +V +H + + + + Sbjct: 793 -WPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFANLGLMIVDEEHRF 851 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + ++ ++ATP L + + D + T + Sbjct: 852 GVRHKER--------IKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSI 903 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V + + L+ I + +V + E + E + E RV H ++ Sbjct: 904 KTFVMQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPEARVGVAHGQMN 963 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++++ +F+VLV ++ G+D+P + + I ADK G + L Q GR Sbjct: 964 ERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ----LHQLRGR 1019 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + PS K + ++R + G G D+ G Sbjct: 1020 VGRSHHQ---AYCYLLVPS-VKGLKGDAKKRLTAIERANTLG---AGFMLASEDLEIRGA 1072 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLEF-------E 653 K + + + L++ ++ G L Sbjct: 1073 GEILGKQQSGN-------MQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDINLHS 1125 Query: 654 EAAQIRDQLHQLRELFI 670 A D ++ + + + Sbjct: 1126 SALIPEDYVNDVPQRLL 1142 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 119/381 (31%), Gaps = 16/381 (4%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN---NKLLEEQRLTQRTQFD 293 P ++ + I+ + + AA LL+ N + + T+ Sbjct: 33 ETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLDKINLNINAPQLLILAPTREL 92 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYR 352 ++E + G+ L +V + I + Sbjct: 93 AIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRGVHAIVGTPGRVMDHIEKKTLK 152 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D + L E L + + Q SAT N + + + Sbjct: 153 LDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSATMPNVIKKIAKQFLNQPK 212 Query: 413 VRPTGLLDPII----EVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYL 466 + + + + + L + + + + +++ TK + +LTE L Sbjct: 213 IIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVTVFDAMIIFVRTKTLTTELTEKL 272 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G ++ DI +R II D + G+ D+L+ ++ GLD+ +S V D Sbjct: 273 SARGFSADAINGDIQQNQRERIINDYKQGKIDILIATDIAARGLDVERISHVVNYDIP-- 330 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + S + IGR R G+AIL+ M I R++ + I Sbjct: 331 ---QDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHVTRQKITPIELPSVKIIN 387 Query: 586 PQGLNKKVVDILALGQNIAKT 606 + + +I+ N Sbjct: 388 AKRIETFKQNIIQTINNQNLE 408 >UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=Desulfovibrio RepID=B8J3P1_DESDA Length = 562 Score = 198 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 51/396 (12%), Positives = 104/396 (26%), Gaps = 25/396 (6%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + K + L + +++ E E G Sbjct: 95 CYLLPMLPRLSADLKAPQALVLAPTRELAVQVEREAAVLF--EGTGIVTVAVYGGVGYKK 152 Query: 325 LFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 D L L+V + + R+ E L + + + Sbjct: 153 QMDALRNGAQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYL 212 Query: 384 ALAP-QTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDL 435 T SAT + L+ SG + + + + + L Sbjct: 213 PRRRIHTCLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRAL 272 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + ++ TK + L+ G L +D+ R ++ +R G Sbjct: 273 VRLL--ETENPASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQG 330 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 + LV ++ G+D+PE+S V + + S I GR R G I Sbjct: 331 KLQYLVATDVAARGIDIPELSHVFLYEPP-----EDHESYIHRAGRTGRAGAAGTVISLV 385 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 D + I + + + + + + + + + + Sbjct: 386 DVMQRMELDRIAKHYKIGLIPLPLPTDEDVAHVAGTRLTAILEGRFRKLTGLERVRVERY 445 Query: 615 ------RPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 D + + L + E Sbjct: 446 AALARELAAEHDDEESVLLLAMLLDEAHQESLRENR 481 >UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammaproteobacteria RepID=RHLB_XANC8 Length = 573 Score = 198 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 101/363 (27%), Gaps = 35/363 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + + + + ++ A E + + + Sbjct: 52 QAQTGTGKTLAFLVAVMNRLLIRPALADR---KPEDPRALILAPTRELAIQIHKDAVKFG 108 Query: 290 TQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL-VVDESHVTIPQI 347 + G + P L DY+ ++ + + + Sbjct: 109 ADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M+ + + E QT+ SAT + LE + Sbjct: 169 DRMFDLGFIKDIRFLLR---------------RMPERGTRQTLLFSATLSHRVLELAYEH 213 Query: 408 VVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + + I + LL + + + R +V TK E Sbjct: 214 MNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR--SEGARTMVFVNTKAFVE 271 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + LE HG RV L D+ +R ++ + G+ ++LV ++ GL + V V Sbjct: 272 RVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN 331 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + IGR AR G AI + + I ++ + Sbjct: 332 YDLPF-----DAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 Query: 580 EEH 582 E Sbjct: 387 TEL 389 >UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=C5S9J5_CHRVI Length = 683 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 101/350 (28%), Gaps = 31/350 (8%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + L + T + G + P L Sbjct: 129 LVLAPTRELAVQIHKDTLALAKHTG-LRSTVVYGGTGYQQQRDELAAGVDILIGTPGRLI 187 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 DY + V + + M+ + + + Sbjct: 188 DYYKQHVFDLKRIEVVVLDEADRMFDLGFIKDIRYL---------------FRQMPPVEQ 232 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + SAT E + + + + + ++ LL I Sbjct: 233 RLGMLFSATLSYRVTELAYEHMNHPRLVKIETEQVTADRVRQVCYMTANEEKIPLLLGLI 292 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R + R++V TKR A+ + YL+ +G L D+ +R++++RD G V Sbjct: 293 RGW--PDGRIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPV 350 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LVG ++ GL +P+V+ V D + IGR AR G A+ + + Sbjct: 351 LVGTDVAARGLHIPDVTHVVNYDLP-----EDPEDYVHRIGRTARAGAAGDAVSFVCETY 405 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + + + ++ D + Sbjct: 406 AFCLLDIEQYIGIKVPVEPVDPALLAEVDPRSRIRPDRADREERRDGRDK 455 >UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23U16_TETTH Length = 475 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 105/355 (29%), Gaps = 33/355 (9%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + Y + E+ + +A L ++ + +F Sbjct: 138 LEKVQYIREYLSFTLLYVTEQSSERSLYNLNSIAINYLAAKYQEYFLNKKVIMYLGEFLK 197 Query: 295 EMM--NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + + P + D + L+ + + M Sbjct: 198 VSAYACTGGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLG 257 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 ++ K + Q SAT LE + + D Sbjct: 258 -----------------RGFKDQINKIFQNLPHDIQVALFSATMAPEILEITKQFMRDPA 300 Query: 413 VRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D L E+ I + ++ TK+ ++L + Sbjct: 301 TILVKNDDLTLDGIKQFYIALDKEEWKFDTLVELYNNIEI-AQAIIYCNTKKRVDELRDK 359 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L E V +H ++D R I+++ R G VL+ +LL G+D+ +V+LV D Sbjct: 360 LIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDLLSRGIDIHQVNLVINYDLPL 419 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + S I IGR+ R G AI + K + + + + + Sbjct: 420 -----KKESYIHRIGRSGRFGRKGVAINFVVPADAKFLKETEKYYQTQIVEMPLD 469 >UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XFS8_CAEBR Length = 817 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 107/393 (27%), Gaps = 52/393 (13%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + F + + + Sbjct: 416 YNKTTPIQ-QFALPLIRDGHDIMACAQTGSGKTAAFLLPIMSRLTDESDLNTAGEGGCYP 474 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----LGYCSGIENYSRFLSGRGPGE 320 R ++L + L +Q + +F + M E G G Sbjct: 475 -----RCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKSQIERGATIVVG 529 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKF 379 + + + + + + + M + +P Sbjct: 530 TVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYEGMPQK-------- 581 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQ 431 QT+ SAT + E + + D + + E + + Sbjct: 582 -----ENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 636 Query: 432 VDDLLSEIRQRAAIN----------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 D LL + ++ +V + +A+ L L +H + Sbjct: 637 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 696 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E +R R G VL+ + GLD+ V V D + I IGR Sbjct: 697 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP-----DNIDDYIHRIGR 751 Query: 542 AAR-NVNGKAILYGD---KITPSMAKAIGETER 570 R +G+A + + + P + K + + E+ Sbjct: 752 TGRVGNSGRATSFIEEGCPLVPDLLKVLADAEQ 784 >UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Saccharomycetales RepID=PRP28_LODEL Length = 597 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 105/354 (29%), Gaps = 25/354 (7%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + + + + E LA E + ++ Q Sbjct: 234 GKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFN 293 Query: 296 MMNELG------YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 +++ +G I+N P L D + L ++ + + Sbjct: 294 VLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADR 353 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + L F T+ +AT + + ++ Sbjct: 354 MIDMGFEKDLNKLINLLPKNEKLSTTIDGKL-FHLTKRLTMMYTATISPPIEKITKSYLI 412 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR-----QRAAINERVLVTTLTKR 457 D G +D + + L I+ +R N V++ K Sbjct: 413 DPAYIYIGGAGEALDNIDQHFDYLSTYAESARLSKLIKVVQGHKRRNRNALVIIFANFKH 472 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + + L+ LE++ +H R E + D R + +LV ++ G+D+P VSL Sbjct: 473 VCDVLSLELEQNNLLNVVIHGSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSL 532 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 V + I IGR R N G++ + D + + + Sbjct: 533 VINYQM-----SKKFDEYIHRIGRTGRAGNLGESYTFLDDADAETFMPLKKFLK 581 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 88/625 (14%), Positives = 189/625 (30%), Gaps = 99/625 (15%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA 100 + G + +A + R T+ + P+ QL E+ F + Sbjct: 12 SPPGLAWQLAQLA-TTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCL-----------W 59 Query: 101 YVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRDVVVVASVSAIYGLGDPDLYLKM 157 +P+ + S + I R + +L + +++ A + + + P++ Sbjct: 60 RMPAWEVLPYDRVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAH 119 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + + G ++D A+ RLAE + D+ +G F RG + D++PA +++ LR+++F Sbjct: 120 VWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-TEETPLRIDMF 178 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +++E + FDP + + ++ FT P + + + Sbjct: 179 GDDIESIRRFDPESQRSGESLSAFTSVPVREVILDQRGRECFAAAFRTRFPHL------- 231 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 R L + GIE + L DYLP ++ Sbjct: 232 -----------RKHPMLSSVQAGRPHPGIEALLP-----LAYDNTARLSDYLPDGAVIYS 275 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 R + F ++ +++PQ +Y T Sbjct: 276 ------------------VRDIDVRRSAFAEQVRGQFEMVRSSTEPSISPQELYAVDT-- 315 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 +S + +I+ + L + ++ ++ + Sbjct: 316 -AIRAESLSAARPAIRIEPAPS--LIDYADKKQPLHALRDALTKQLNHGWKIELIA---- 368 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD-VLVGINLLREGLDMPEVS 516 H +E +L + I L G +P+ Sbjct: 369 -------------------HGLGQQERMLEACAELSDTFAGAISSCIGYLDTGFALPQQK 409 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQ 575 + + + G Q + R R +G AIL+ D + + K Sbjct: 410 RLLLTGRELLG---------QRLPRKRR--SGPAILHADIFSSLAELKPGDPVVHEDHGV 458 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR-GKSRPIVEPDNVPMDMSPKALQQ 634 +Y+ I G + I + + R E + + ++ Sbjct: 459 GRYHGLETIDEDGDLADFIKIEYADKAHVFVPVEELARLHRYTGEDAPALNKLGSEKWKR 518 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIR 659 ++ ++ A L EAA+ Sbjct: 519 TRERVKRDLLAMAHELIDIEAARTS 543 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 62/438 (14%), Positives = 117/438 (26%), Gaps = 38/438 (8%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 P + + ++ Q E Sbjct: 583 TDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAPTTVLANQHYASFAER- 641 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + +S + + L + ++ +H + Sbjct: 642 -----FIGTDLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLLSDTFEFADLGMVI 696 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + +G + + + + + ++ATP L ++ + + T Sbjct: 697 VDEEQRFGVK--------HKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVSIISTP 748 Query: 418 LLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY- 475 + I + IR+ +V + E +T L E Sbjct: 749 PAEREAIRTMVSSFDPHIAREAIRRELYRGGQVYYLHNHVQSIERITARLREDVPEAEIG 808 Query: 476 -LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 H + E + G +LV ++ GLD+ + + + AD G + Sbjct: 809 IAHGQMTPAELDRQMLAFYEGRLHILVCTTIIESGLDVANANTLIVERADLLGLSQ---- 864 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 L Q GR R+ Y TP A+A+ R R + + E G G Sbjct: 865 LHQIRGRVGRSHRQ---AYAYLFTPD-ARAMTADARERLQAIAEHSELG---AGFLLARQ 917 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF-- 652 D+ G + D + +DM L + E G M + Q L+ Sbjct: 918 DMEIRGAGNLLGAEQSGR-------IDEIGLDMYLDMLSDAVAEARGKMPKPKQPLDMHL 970 Query: 653 -EEAAQIRDQLHQLRELF 669 A D + Q E Sbjct: 971 GVNAILPPDYMPQAGERL 988 >UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Vibrio alginolyticus 40B RepID=D0WTV5_VIBAL Length = 445 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 100/354 (28%), Gaps = 19/354 (5%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 ++ + T+ ++E G + G L + ++V + Sbjct: 100 EQKALILVPTRELAMQVSEAINQVG-QVLELNAVCLCGGVDKEQQQQALATNPHILVATT 158 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + L E L + QT SAT + Sbjct: 159 GRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFSDEL 218 Query: 401 LEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 K+ + + + + ++ L+ I + + LV Sbjct: 219 KGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELI--QKNAWTKALVFI 276 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 K A+ L + L + G LH + ER E + + G+ VL+ +LL G+ + Sbjct: 277 GAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIE 336 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 ++ +V + + + +GR AR G A+ AI +R Sbjct: 337 QLPVVINFELPMY-----AETYVHRVGRTARAGEQGVAMSLVCHGEMDALSAIRHLTQRA 391 Query: 573 EKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 Q + + + D A + AK K P Sbjct: 392 LPVQDLAGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPAPSAK 445 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 107/405 (26%), Gaps = 35/405 (8%) Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L E ++L T + G + S P + +L Sbjct: 81 CPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHGAHIVVGTPGRILQHL 140 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + + M K QT Sbjct: 141 QEKTINFEHIKTLVLDEADRMLDMG-----------------FYEDIEKIIAKMPKERQT 183 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQ 441 + SAT + + + + I + L + + Sbjct: 184 LLFSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLN 243 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + V++ TK L L E G LH D++ + R E + G +LV Sbjct: 244 EM--PKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILV 301 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 +L GLD+ +V +V + + IGR R GKAI + S Sbjct: 302 ATDLAARGLDIKDVEMVINYELPH-----TIEIYTHRIGRTGRMGKEGKAISFVTPSEES 356 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + E + + + + + G K +A G + Sbjct: 357 FLHELERV-GFAFTCKDAREILPLHVKPKRAEFITLCIDGGKKQKVRA-GDILGVLTKDI 414 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + +K + + A I+++ ++ Sbjct: 415 GLEGSLIGKIDILEKYAYVAIKREYADKAFNGLCATTIKNRRFKI 459 >UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L277_PLAKH Length = 906 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 55/363 (15%), Positives = 109/363 (30%), Gaps = 35/363 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE-----LAARRKVLLENNKLLEE 283 + F T+ + + + L L L E Sbjct: 558 ASSQTGSGKTFSFLCPVITNLIEDNDTLRPHFPGAYACVFPLGLVLCPTRELVLQILNEV 617 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 LT+ + P L D + + + + ++ Sbjct: 618 NSLTKNMELVCMAFYGGETMKDQIVQINERQADIIVSTPGRLLDLMNSCKVSLSFVKYLI 677 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + M + + + L + A QTI +AT + E Sbjct: 678 FDEADEMISLGLKEQMDAILFEKDL-------------CASEARQTILFTATFSDSLRED 724 Query: 404 SGGDVVDQ-VVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + V + +++ P + D+LL +++ + ++ Sbjct: 725 IEKFMGTPYVFLNITQKREVQNSIKQVVKYVPAKCKQDELLKDLKPLQ---GQAIIFVEL 781 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L+ +G +V YLH + V R ++ + R EF +LV ++ GLD P++ Sbjct: 782 RSSINYIFSALKSNGYQVNYLHGKMSQVRRQDVFQQFRDREFQILVATSIAARGLDFPDL 841 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 LV D E + IGR R G AI Y + + + + R+ + Sbjct: 842 ELVINYDLPAE-----FEQYMHRIGRTGRIGKTGLAINYFNSSNKKIIDKLIDHLRKHNQ 896 Query: 575 QQK 577 Sbjct: 897 TVP 899 >UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RVR9_TRIAD Length = 633 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 62/431 (14%), Positives = 125/431 (29%), Gaps = 54/431 (12%) Query: 188 FQRGTFRVRGEVIDIFPAESDD---------IALRVELFDEEVERLSLFDPLTGQIVSTI 238 ++G F+ I A +D ++ + FD + D + T Sbjct: 49 EEKGDFKK----FRISSAIADSLKERGITYLFPIQAQTFDYVYDGQ---DVIGQARTGTG 101 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + +++ + L L E + L+ + Sbjct: 102 KTLSFALPITEKLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGS---LKVVCI 158 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G + P + D++ L++ HV + ++ M Sbjct: 159 YGGVPYAEQENHLRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDI 218 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---- 414 + + PQT+ SAT + L+ + Sbjct: 219 VEEILSH--------------AYVKDRHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLI 264 Query: 415 ------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT--EYL 466 + ++ + P + + ++ + R ++ + TK+ A +L L Sbjct: 265 GKDALRTSTTVEHKVISCPYHERAATIGDLVKVYGGDHARTIIFSPTKKEANELALSSVL 324 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 ++ V+ LH DI +R ++ R G F LV ++ GLD+PEV LV + Sbjct: 325 KQE---VQVLHGDIQQAQREVTLKGFREGNFPCLVATDVAARGLDIPEVDLVIQCEPP-- 379 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + I GR R G I + K+I + + I Sbjct: 380 ---KDADTYIHRSGRTGRANRTGICITFYKPTHQDRIKSIESEAGINFCRIGAPQLGDII 436 Query: 586 PQGLNKKVVDI 596 + Sbjct: 437 QATSRDAAKSL 447 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 96/300 (32%), Gaps = 16/300 (5%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + + L++ ++L S + + G P L +VV Sbjct: 122 PQALVVVPTRELCLQVTHDLTDASKHMD--VRVLAIYGGRPYEPQIAALRKGVDVVVGTP 179 Query: 341 HVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + R L E L + QT+ SAT Sbjct: 180 GRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTMLFSATMPGP 239 Query: 400 ELEKSGGDVVDQVVR-----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVT 452 + + + G + E D + + + +R ++ Sbjct: 240 IITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDKVELLARVLQARDRGLSMIF 299 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T TKR A+ + + + E G V +H D+ R + +R R G+ DVLV ++ G+D+ Sbjct: 300 TRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVATDVAARGIDV 359 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V+ V E++ + IGR R G A+ D + I + Sbjct: 360 EGVTHVVNYQCP-----EDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQMISDALNL 414 >UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmodium RepID=Q8I457_PLAF7 Length = 755 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 55/458 (12%), Positives = 130/458 (28%), Gaps = 39/458 (8%) Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G+ + + + +++ +E+ E + + ++ ++ Sbjct: 192 GKTLAFALPLVEKL-YKMKTSNEKFEEENGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQ 250 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + L L + ++Q F++ + G + Sbjct: 251 NREHNKDPSILVLEPTRELSKQVENTFKEISQFYNFNIMSI-YGGESYTYQENKLRKGID 309 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P + D++ L + + +V + + M + L Sbjct: 310 ILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINL-------- 361 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPIIEVRPV 428 Q + SAT ++ + S + + + I P Sbjct: 362 --------KEAQVLLYSATTPSWIKDISSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPY 413 Query: 429 ATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + LL +I + +V++ T TK A+ L LH +I R Sbjct: 414 DIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREY 473 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V 546 ++ R G F +L+ ++ GLD+ V LV I GR R Sbjct: 474 TMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNY-----SAVYIHRAGRTGRANK 528 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA-- 604 G +++ I + + + + + + + I Sbjct: 529 KGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQVFHCASAIASKKVENVNKEILPF 588 Query: 605 ----KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + + S I + + + ++ A ++ I + Sbjct: 589 FHDTAKELINKSNSLKIDQIELISRCLAIIAKKEHIKK 626 >UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Bacteria RepID=C7PAU3_CHIPD Length = 414 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 125/417 (29%), Gaps = 58/417 (13%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I R L EL + R F+ ++ ++V ++ Sbjct: 10 EEIKRSLEELGFKRPTDI----QFKAIPSILK----------------GDDVLAIA---- 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I R + L +RL + Sbjct: 46 --QTGTGKTAAFAIPVLHKLQQYHPRKTKGEVRCVV---MVPTRELAVQISEVFERLAKY 100 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ ++ + G + P +FD + + + + + + Sbjct: 101 TKLNILGL-HGGVDQAPQLKKLAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADH 159 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M R + QT++ SAT + + V Sbjct: 160 MLDLGFIRDIR-----------------DVLKHLPRRHQTLFFSATIDEDIKDLAYSVVN 202 Query: 410 DQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTE 464 + + DP+ ++ +DD + + ++LV TK AE + Sbjct: 203 NPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERLVKEFPENKILVFVRTKVRAERVAA 262 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E G + +H + R++++ + + G+ +L+ ++ G+D+P+V V D Sbjct: 263 AMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLLITTDVNARGIDIPDVEYVVNYDLP 322 Query: 525 KEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + +GR R G+A+ + + AI + + K ++ Sbjct: 323 -----DVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDAIQQYLGKEITVMKIDK 374 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 64/475 (13%), Positives = 137/475 (28%), Gaps = 39/475 (8%) Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI PA + + + ++ SL D L G+ V + +V P ++ Sbjct: 9 LDINPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALEKIEV 68 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + + + L + + + G G + S S Sbjct: 69 NDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHSPHIIV 128 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P + D++ + + + + + M + Sbjct: 129 GTPGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFEDDLRI-----------------I 171 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV------ATQVD 433 QT+ SAT + + + V + + + T+ Sbjct: 172 FGQTPKQVQTLLFSATFTEQIERVAKQYLHNPVTCKVESQENKPAITQLGYNVLPHTRTQ 231 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + + N +V K D+ + L E G + L D++ +R ++ Sbjct: 232 ALKAVLTEYQPKN--AIVFCNRKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTSVLMQFA 289 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 VLV ++ GLD+ +V+ V + I IGR AR G AI Sbjct: 290 SDSLQVLVATDVAARGLDIDDVACVINY-----TVSEEPETHIHRIGRTARAGAKGMAIT 344 Query: 553 YGDKITPSMAKAIGETERRRE-----KQQKYNEEHGITPQGLNKKVV--DILALGQNIAK 605 + + I + + ++++ P+ + L Sbjct: 345 LVSEEEEHFLRKIEVLQESDIPLKGAQSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLV 404 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P + + + S + K ++ M Q + + + R Sbjct: 405 GALT-KDAGIPGDDLGKIKVQNSMSFVAVKTRSVKKAMTQFREGKIKGKRIRARK 458 >UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1N6E2_9GAMM Length = 475 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 45/377 (11%), Positives = 99/377 (26%), Gaps = 40/377 (10%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P +++ + L ++ F I +T + + Sbjct: 123 PIQAEALPYT--LAGRDIIG------KAQTGTGKTAAFLITVLQKLLTVKPE--ERFASE 172 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L + L++ ++ + + P Sbjct: 173 PRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQLENEVVDVVVATPG 232 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L DYL + + + I + M + G E Sbjct: 233 RLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRG---------------TPE 277 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-------PVATQVDDLL 436 QT SAT + S E + + L+ Sbjct: 278 KSIRQTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALI 337 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + ++ + DL + L + G + L ++ +RM+ + + + Sbjct: 338 EYL--EKENTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSED 395 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 VLV ++ G+ + ++ V + + IGR R +G AI + D Sbjct: 396 GAVLVATDVAGRGIHVDGITHVFNYNLP-----DDPEDYVHRIGRTGRAGESGTAITFID 450 Query: 556 KITPSMAKAIGETERRR 572 + + ++ Sbjct: 451 EYEAYGLMDLESYLGKK 467 >UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetaceae RepID=PRP28_YEAST Length = 588 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 105/308 (34%), Gaps = 24/308 (7%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + + + + + + + G+ ++S P L D L Sbjct: 268 QQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLEN 327 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 L++ + + + M + T + A+ QT+ Sbjct: 328 HLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKV-----------DINADSAVNRQTLM 376 Query: 392 VSATPGNYELEKSGGDVVDQVV----RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI-N 446 +AT + + G + V TG I +V A +D +++ A + Sbjct: 377 FTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIVAKYD 436 Query: 447 ERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +++ K+ A+ L E ++ +V LH +R ++ R + +++ N+ Sbjct: 437 PPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNV 496 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAK 563 GLD+P VSLV + I IGR R G A+ + S+ + Sbjct: 497 AARGLDIPNVSLVVN-----FQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIR 551 Query: 564 AIGETERR 571 + + R+ Sbjct: 552 ELYKYVRK 559 >UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphingobacteriales RepID=Q11WD3_CYTH3 Length = 463 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 61/453 (13%), Positives = 132/453 (29%), Gaps = 49/453 (10%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E++ ++ L G + + + Y P ++ + + Sbjct: 30 EIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILMKIKYAQGHNPRAVIFGPTRELVMQ 89 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + + + G ++ P D + +++ + Sbjct: 90 IEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQKGVDIIVATPGRFLDLYLEEEIVLKEV 149 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + K E Q + SAT Sbjct: 150 KTMVLDEADKMMDMG-----------------FMPQLRKMLEVIPRKRQNLLFSATMSER 192 Query: 400 ELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + + + + P LL + ++ R ++ Sbjct: 193 VERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPNFKTKIHLLEYLIRKDESVTRAIIF 252 Query: 453 TLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK+ A+D+ +++ + R +H++ D R+ + D + G +LV ++ G+D Sbjct: 253 VRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKILVATDVAARGID 312 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + EVS V D I IGR R + G AI + + + I + R Sbjct: 313 VHEVSHVINFDVPII-----YDDYIHRIGRTGRANHTGVAITFATEAEMYHIEKIEKIIR 367 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + ++ IT G + A + K K Sbjct: 368 MQIPVEELPAAVEITETGFEESQE--FARELDFYKKKEDP----------------TYKG 409 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A +K +L+G Q A A+ ++ Sbjct: 410 AFHEKKRDLKGDAKQTAYKPGKSVKAKPSKEIR 442 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 58/408 (14%), Positives = 110/408 (26%), Gaps = 35/408 (8%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L L + E +++ + + G G + S P Sbjct: 53 QALVMCPTRELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGR 112 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++L L + + + + + M E Sbjct: 113 LMEHLRKGTLKLNALNTLVLDEADRMLDMGFVDSIRE-----------------IVELTP 155 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQ 441 QT+ SAT G+ S + L P IE V ++ D + Sbjct: 156 SNRQTLLFSATYGDGIEAISKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLA 215 Query: 442 RAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V TK ++ + ++L EH + +H D++ +R +++ V Sbjct: 216 TLQHFEPRQAIVFCNTKAESQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCV 275 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ E+ LV D R IGR R G A+ Sbjct: 276 LVATDVAARGIDVKEIDLVVNYDT-----TRDTDVHTHRIGRTGRAGAAGIAVNLVTSKD 330 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNK------KVVDILALGQNIAKTKAKGRG 612 + I + K +I G G Sbjct: 331 DYKVRDIESRFNITANFIELEAIDPHYRLIPQKTTISFDAGRKNKLRPGDILGALTAGLG 390 Query: 613 KSRPIVEPDNV-PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + V ++ + + + A +R Sbjct: 391 LDKSQVGKIDIFDFHAYVSVDNEVAKTVVKEFENKKIKGKNIRARILR 438 >UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA helicase) n=6 Tax=Sphingobacteriales RepID=Q11UI8_CYTH3 Length = 437 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 67/462 (14%), Positives = 140/462 (30%), Gaps = 37/462 (8%) Query: 192 TFRVRGEVIDIFPA--ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 F ++D + + ++ E + S + + Sbjct: 5 DFNFNSGLLDSLSSMGFNKPTPIQTEAIP-VIMSNSDLVACAQTGTGKTAAYMLPILHKI 63 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + L R++ ++ ++ +E G + Sbjct: 64 IESNTDSLDTLV-----LVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRK 118 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P L L + + H+ + + M Sbjct: 119 ALTDGANIVIATPGRLLAQLQSGTANLKQIKHLVLDEADRMLD----------------- 161 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----IIE 424 + ++ + QTI SAT + + D + P Sbjct: 162 MGFYDDIVRVISYLPTERQTIMFSATMPTKMRALANKLMKDPQQINIAISKPAEGILQQA 221 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 Q + L+ I N +++ + TK + L L G ++ HSD++ E Sbjct: 222 YLVYEEQKNKLIKHILSSGNFN-SIIIFSSTKEHVKKLERDLSNMGFSLKGFHSDLEQEE 280 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAA 543 R EI+R + + +L+G ++L G+D+ + LV + + I I A Sbjct: 281 REEIMRAFKSRQLQMLIGTDILSRGIDIDGIDLVINAEVP-----GDAENYIHRIGRTAR 335 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G AI + I R ++ K E G P +K G + Sbjct: 336 AATTGTAITFISDTDQYKFLQIENLIGREIEKLKIPIEIGEGPAYEPEKKPKYNNKGFSN 395 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 K+K+ +G +RP + + P+ P ++ I + + + Sbjct: 396 NKSKSGSKGSNRPTPKEHSKPVHREPSGIKHTIVKKQNPPQE 437 >UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Kluyveromyces lactis RepID=PRP28_KLULA Length = 539 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 55/376 (14%), Positives = 120/376 (31%), Gaps = 31/376 (8%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ---RLTQRT 290 + + ++ + LA E + ++ + Sbjct: 183 STGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWK 242 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + + G+ + + P L D L + L + + + + + M Sbjct: 243 RPCNIVSIVGGHSLEEISANLRDGCDILVATPGRLLDCLDSHLLFLKQVNTLVLDEADKM 302 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + T + + QT+ +AT + + G + Sbjct: 303 IDFGFEDQLTTILA---------------KTETISNRQTMMFTATFSPTIEKVANGYLKK 347 Query: 411 QVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEY 465 G + I ++ ++ L + + N + +++ KR A+ L + Sbjct: 348 PSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAPIIIFINYKRTADWLFDK 407 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L E R LH +R + LR G+ D+L+ ++ G+D+P VSLV Sbjct: 408 LREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVN----- 462 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS--MAKAIGETERRREKQQKYNEEH 582 F +S S + +GR R G A+ + + MAK ++ + Y + Sbjct: 463 LQFPKSFDSFVHRVGRTGRAGKTGTALTFLTEEEDHSAMAKLFDYVKKNDFTGENYISKE 522 Query: 583 GITPQGLNKKVVDILA 598 ++ ++K + Sbjct: 523 AMSKYNVDKSSYKPII 538 >UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=Eukaryota RepID=RH10_ARATH Length = 456 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 50/413 (12%), Positives = 106/413 (25%), Gaps = 37/413 (8%) Query: 232 GQIVSTIPRFTIYPKTHYV--TPRERIVQAMEEIKEELAARRKVLLENNKLL-EEQRLTQ 288 F I + + A E + E+ Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQI 347 + G + + P L+D++ G + ++ + + Sbjct: 114 ADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEA 173 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + D + E L +T SAT + Sbjct: 174 DRLLNEDFEKSLNQ-----------------ILEEIPLERKTFLFSATMTKKVRKLQRAC 216 Query: 408 VVDQVVRPTGLLDPII-----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + V + + R VA + D ++ T T L Sbjct: 217 LRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFL 276 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L G R + + +R+ + + GE ++LV ++ GLD+P V +V D Sbjct: 277 ALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYD 336 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ----- 576 + + I +GR AR G I ++ I + ++ + Sbjct: 337 IPT-----NSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEED 391 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + +++ G + + + D + Sbjct: 392 EVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERGG 444 >UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQV9_9SPHI Length = 535 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 65/413 (15%), Positives = 130/413 (31%), Gaps = 18/413 (4%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 L D+ + + + L + + I + + L + Sbjct: 7 NLHDDLLAGVDAMNYLKATPIQEMAIPKILAGKDLIASAQTGTGKTAAYLIPLLDKISHT 66 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNE--LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + T+ + ++E G+ ++ S + G G G+ L Sbjct: 67 ---AHDHTSTLILVPTRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRKALETG 123 Query: 333 GLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +++ I + G + D+ L E L + + E QT+ Sbjct: 124 ADIIIATPGRLIAHMQLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPAKRQTLL 183 Query: 392 VSATPGNYELEKSGGDVVDQVVR------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT N E S + D P +D + ++ L I+ Sbjct: 184 FSATMPNKIREFSKKLLTDPEEIRLAVSKPAAGIDQQFYMAFDNQKLPLLAHLIKNSTKP 243 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +++ T K + L + R + SD++ +R ++RD + F +LV ++ Sbjct: 244 VQSMVLFTSRKSEVNSIVRALSKLNYEARGISSDLEQDDREVVLRDFKNKAFPILVATDV 303 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKA 564 L G+D+ ++ V D R + I A G AI + + + Sbjct: 304 LSRGIDIDNLTHVVNYDIP-----RDAEDYVHRIGRTARAATTGTAITFVSDQDQNRIVS 358 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 I + R +Q EE G+ + G + A+G + Sbjct: 359 IEKLIEREVDKQAITEELGMGKSPVFDPKRFSGRRGDSSRGGSARGANAAGKG 411 >UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C1LZ65_SCHMA Length = 840 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 92/301 (30%), Gaps = 16/301 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + L+ + L++ +E + + Y+ + G Sbjct: 353 WPLIIHIMDQPELKLGDGPIGVICAPTRELALQIYSEAKKLAKV--YNLTVVCAYGGGSL 410 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 A ++V I + R E + + Sbjct: 411 WEQQKACEAGCEILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIAN 470 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 QT+ SAT + ++D V G + +E+ Q D Sbjct: 471 HVRPDRQTLLFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWD 530 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ R VL+ K +E++ + L+ +V +H D+ +R +I+ + Sbjct: 531 WLTRNLVRLTTEGSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKR 590 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 E +LV ++ GLD+P + V + R + IGR R G A Sbjct: 591 QEAPILVATDVASRGLDIPSIHNVINYEV-----ARDIDTHTHRIGRTGRAGAKGTAYTL 645 Query: 554 G 554 Sbjct: 646 F 646 >UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001B1BBE4 Length = 547 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 48/364 (13%), Positives = 98/364 (26%), Gaps = 25/364 (6%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + + + + + +V+ + ++ ++ Sbjct: 165 ILSGKDLMATAQTGSGKTVAYVLPIIQKLLMDPQILVKDRNHSEPQVVIMAPTRELAVQI 224 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 R + G + P L +++ + Sbjct: 225 KMVVLKLARGTGISSFVCYGGTLVSHQKNQILKGCHILVATPGRLNEFVQHGFITFSSVR 284 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + ++ M D + F +PS + QTI +SAT + Sbjct: 285 FFVLDEVDKMLDIDLKPDIDKILDHFSMPS-------------VMDRQTIMLSATLPDAT 331 Query: 401 LEKSGGDV-VDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLT 455 + + + + G++ I+ + + + +V Sbjct: 332 QHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNKRDILTSILKKDSVGTIVFVNQ 391 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K A+ L YL E +H D +R + D R + +VLV + GLD+ V Sbjct: 392 KWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRTRKMNVLVATTVAARGLDIKCV 451 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA-IGETERRRE 573 + V D +Q IGR R G A D + I Sbjct: 452 NHVLNYDMPL-----VIEEYVQRIGRTGRLGNKGIATSLFDPDEDYLLVDPIISILASAN 506 Query: 574 KQQK 577 ++ Sbjct: 507 QEIP 510 >UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q93382_CAEEL Length = 811 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 18/339 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + L+ + + + +++ E + N + G G Sbjct: 321 WPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYN-INPICAYGGGSKW 379 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR--KETLVEYGFRLPSALDNRPLKFE 380 + +VV I + M + R E + + Sbjct: 380 EQSNELQNEGAEMVVCTPGRIIDLV-KMGATNFLRTTFLVFDEADRMFDMGFEAQVKSIS 438 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEV-RPVATQVDDLL 436 + Q + SAT + +VD V G + IE V D L Sbjct: 439 DHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKL 498 Query: 437 SEIRQRAAIN---ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + + +VL+ K +ED+ + L+ + LH D+ ER E + R Sbjct: 499 HWLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFR 558 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 + +LV ++ GLD+ E+ V D R + + IGR R G A Sbjct: 559 K-KSQILVATDVAARGLDISEIRTVINFDM-----ARDIDTHVHRIGRTGRAGHKGTAYT 612 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + M + + ++ + Sbjct: 613 LVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKSSWFR 651 >UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH Length = 537 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 98/351 (27%), Gaps = 31/351 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + R + + L L + + LT T Sbjct: 141 QTGTGKSAAFLVTIIARLMKNPTR-GKREKGTPRALIIEPTRELVLQIEKDAKALTLYTP 199 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + ++ P L D++ + + + I + + Sbjct: 200 LRTVSVFGGMDYKRQQDQLASAHVDIIAATPGRLMDFMRQKLINLGKIEILVIDEADRLL 259 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT++ SAT L + VD Sbjct: 260 DMGFIPDMRNII---------------YNTPHKKERQTLFFSATLAPEILRMANQWTVDP 304 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V ++ + + + L + I RV++ + + + Sbjct: 305 AVVEIDPDKTAADSINQKVFIVTEDQKFPLLYNLISGEKLE--RVILFVNMRSTTRRIAQ 362 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + L ++ +R+ + D R G+ VLV ++ GL + VS V D Sbjct: 363 RLVQFDISSEILSGEVSQKQRIRTLDDFRNGKVRVLVATDVAARGLHIEGVSHVINYDLP 422 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 + I IGR R G ++ + D+++ I + + Sbjct: 423 -----QDPEHYIHRIGRTGRAGAEGISVSFADEMSSFQIPDIEAVLGNKLE 468 >UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BDT5_PARTE Length = 1238 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 76/521 (14%), Positives = 144/521 (27%), Gaps = 79/521 (15%) Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RL A +++ + P G I + +L Sbjct: 68 ERLEAFYR----EKEIIIKTFE--NQKVPPPFLSWAS----AGFPIPILESIEQL----- 112 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 F+ P + + L +V ++ + Sbjct: 113 ----------QFK--------SPTIIQSVVFPIILAGYDVIGIA------QTGSGKTIAY 148 Query: 242 TIYPKTHYVTPRER--IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + + + + + L L E Q TQ + + Sbjct: 149 LLPGLIQITSQKTEELNNTKKQNGPQMLILVPTRELAMQIESEIQLFTQNYRLKTLCIYG 208 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + Y+ P L D+L + + S++ I + + Sbjct: 209 GINNRKNQFYNLGRFPNILVATPGRLLDFLREGATTLANVSYLVIDEADRLLELGFEDTI 268 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG- 417 + R QT++ SAT + + + G Sbjct: 269 REIVQQIRFD-----------------RQTVFFSATWPKAVKDLAFDFCQYSPIYVQIGK 311 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 +D I ++ LL I I+++VL+ + K+ E L+ + + G Sbjct: 312 SNLTINKNIDQEIICLFQKDKLQKLLD-ILDTLKISDKVLIFSEQKQRCEQLSINMADKG 370 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LH D +R EI++ R G +L +L GLD+ ++++V D K Sbjct: 371 YYTIALHGDKTQPQRDEIMKAFRSGYTRLLCATDLASRGLDVTDITVVINYDFPKY---- 426 Query: 531 SERSLIQTIGRAARN-VNGKAILY--GDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 I IGR R GKA + DK P +AK + + + + + Sbjct: 427 -FDDYIHRIGRTGRGEKKGKAFSFLAYDKDEPRIAKELLKLAQVANLKYDDSALQNFAIG 485 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 + D N K + R + + Sbjct: 486 IFPQMRNDFEY---NRFKQQQSRDNNQRVNFQFSKNSQEQY 523 >UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AF33_9CRYT Length = 590 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 28/292 (9%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + +N + P L D L + + + + + + Sbjct: 257 CLIGGESAREKQNIIQRQGVHMIVATPGRLADMLRKKKVTLYQCRYFCMDEADRLTEAGF 316 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + QT+ SAT E + +VD +V Sbjct: 317 EEAVR-----------------YIFDNFHERRQTVLFSATMPQKTQEFTRTALVDPIVVN 359 Query: 416 TGLLD----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 G +++ Q L ++ RVL+ K+ +++ EYL G Sbjct: 360 VGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAPRVLIFCENKKDVDEIHEYLLLKGV 419 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + +HS + +R + + RLG DVL+G ++ +GLD P + V D + Sbjct: 420 KAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVINYDMP-----KE 474 Query: 532 ERSLIQTIGRAARNVN-GKAILYGDKITPS-MAKAIGETERRREKQQKYNEE 581 + + IGR R + G + + D P + + ++ E Sbjct: 475 IENYVHRIGRTGRGDSVGVSTTFIDNSLPETLLCDLKALLIEAKQIIPPFLE 526 >UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5M7_9FIRM Length = 426 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 109/390 (27%), Gaps = 29/390 (7%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L + + + + +++ E S E + G Sbjct: 56 YLLPLLARIKPQGAAAQALVIAPTRELAIQI--EHVAASLAEPLGIGTTVIYGGADIERQ 113 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L LV+ + + R K L E L A Sbjct: 114 KEKLRRSPQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAA 173 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLS 437 Q SAT + + + + ++ ++ ++D L + Sbjct: 174 QDYQLALFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCA 233 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + A +V TK L L + G V L D+ +R ++R R + Sbjct: 234 SINEEA--PYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKL 291 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +L ++ GLD+ V+ V D + I IGR R GKAI Sbjct: 292 QILCATDIAARGLDIEGVTHVYNYDLP-----PTVTDYIHRIGRTGRAGTQGKAITLVAP 346 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + + ++ + KK G+ A+ KA ++ Sbjct: 347 HQHEKLRKMEAALKACLRR-----------DVVKKKKRPAPPAGEGDAQKKAHPPRDAKR 395 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 P K + + + + Sbjct: 396 RALPKRTKSKPRSKKAGKTVTNIGRRSRRK 425 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 99/366 (27%), Gaps = 51/366 (13%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + + E R E N + T+ Sbjct: 91 QTGTGKTAAFLLPTMNNLEHIAP--PKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTR 148 Query: 292 FDLEMMNE-----------------LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + ++E G + + P L D + Sbjct: 149 ELAQQIDEVAGKIADVTGHVAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGAC 208 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + + M + QT+ SA Sbjct: 209 HLDEVKVLVLDEADRMLDM-----------------GFLPAVRRIVRETPAERQTLLFSA 251 Query: 395 TPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T + + V D +D + + + + L +++ E Sbjct: 252 TLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPVSIEAKNNLLPEFLKKE--GPE 309 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 R +V TK A+ LE G + +H + +R + R G DVLV ++L Sbjct: 310 RTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALSAFRDGTVDVLVATDVLA 369 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ +V V D E I IGR R G AI + + I Sbjct: 370 RGIDISDVRYVVNFDVPAE-----PTDYIHRIGRTGRAGELGWAITFVTEQDVDEFYEIE 424 Query: 567 ETERRR 572 + + Sbjct: 425 KLMDKT 430 >UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1FAF2_ACIC5 Length = 430 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 98/332 (29%), Gaps = 17/332 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L A ++L K LT + L++ + +G + G Sbjct: 55 FLLPAMERLLATKGKHPAVLILTPTRELALQVEKQYAQLAGKS--LPQAATLIGGASENN 112 Query: 325 LFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L A L+V + R L E L + Sbjct: 113 QIRDLKAGARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKL 172 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDDLLS 437 QT+ SAT + + V G I A Q L+ Sbjct: 173 PRQRQTMCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVDADQKAALVH 232 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + A + LV TKR E + + L+ G V LH D +R + D + G Sbjct: 233 RVV--TAEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRA 290 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV ++ G+ + ++ V D + I GR R G A + Sbjct: 291 RVLVATDVASRGIHVDNIAQVINYDMP-----KMTEDFIHRAGRTGRAGATGVAATFYTP 345 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + +T R+ ++ + G+ + Sbjct: 346 LERREFNRFEKTLNRKIERVMIASDSGLDREE 377 >UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q2YZZ9_9BACT Length = 453 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 94/338 (27%), Gaps = 29/338 (8%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +++ L L L + L T G + Sbjct: 55 FLLPILHQLIDRPRGTTRALVITPTRELAAQILEDLNDLAVHT-PISAAAVFGGVSIRPQ 113 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ P L D+ A + H+ + + M Sbjct: 114 EHAFRRGVDVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLD--------------- 158 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----I 422 + + QT++ SAT + + + + Sbjct: 159 --MGFLPDIRRILKHIPARRQTLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGIT 216 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 V PVA ++ L + LV T TK A L E+L G + +H + Sbjct: 217 QAVYPVAQELKAALLVALLKRDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQ 276 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 R E + + G++ VLV ++ G+D+ E+ V D I +GR Sbjct: 277 GRRTEALAGFKAGKYRVLVATDIAARGIDVTELGHVVNFDVPL-----VPDDYIHRVGRT 331 Query: 543 ARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 AR G A + I ++ + Sbjct: 332 ARAEATGDAFTFVSPQEQGDLTRIERVIGKQLPRITVP 369 >UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Plasmodium RepID=Q8I416_PLAF7 Length = 1490 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 64/398 (16%), Positives = 122/398 (30%), Gaps = 26/398 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L NN LT + +++ NE N + G L Sbjct: 787 HQEPLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVN--IEILAVYGGSNIARQLKVLK 844 Query: 331 ADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++V I + + +R L E L +++ Sbjct: 845 KGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKD 904 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT +SAT NY + + + G + +E+ + +V LL + Sbjct: 905 KQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLL 964 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + VL+ + A+ L L ++ + LH D +R + + E V Sbjct: 965 GEWIKYG-LVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKV 1023 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +++ G+D+ + LV I IGR R+ N G A + Sbjct: 1024 LIATSVMARGIDIKNIILVINYQCP-----DHIEDYIHRIGRTGRSNNIGYAYTFILPNE 1078 Query: 559 PSMAKAIGETERRRE----KQQKYNEE-HGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + A I + K ++ + + ++ G+N K Sbjct: 1079 YTKAYDIYNLLKNNIYYLNKTIDIPQDLENMIIEYTKINSINEKQKGKNKNLGYKGKGYK 1138 Query: 614 SRPIVE-PDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 P + + + ++ K L E +Q L Sbjct: 1139 FTPDEKSRHQIDIALAKKELGLTQENDENEKLQVDDEL 1176 >UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanosoma brucei RepID=O15919_9TRYP Length = 546 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 108/344 (31%), Gaps = 43/344 (12%) Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + P L D+L ++ + S + + + Sbjct: 220 RYGGAPREAQARRLHNGCDVLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKV 279 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPT 416 + + F QT+ SAT + + + ++ V + Sbjct: 280 QLDDILGYF---------------SSHRPAQTMMWSATWPPVVEQLAQEYLSQNRYVIRS 324 Query: 417 GLL-------DPIIEVRPVATQVDDLLSEIRQRAAINE------RVLVTTLTKRMAED-- 461 G + I + A ++ + + + ++++ + E+ Sbjct: 325 GTAGTGLQVNENIKQHIFFADAPEERVKTLVSLIKEGKIDENTAKMMIFVERQTDTENAA 384 Query: 462 --LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 L L H + +H + +R I+ + G +LV ++ GLD P+V+ V Sbjct: 385 YALARMLGIHSRCIGVVHGGMQQRQRDHIMGIFKEGRIRILVATDVASRGLDFPDVTCVV 444 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR----EK 574 L A ++ S IGR R G++ + + S+AK + + + Sbjct: 445 NLIAP-----KNIDSYCHRIGRTGRAGRTGESFTFIGRSDGSLAKDLINYLEKCGMDVPQ 499 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + E + + + Q +++++G + P Sbjct: 500 RLVEFAEEHAQGEEIKRMKRPWRGRQQREGRSQSRGGREPAPRD 543 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 47/363 (12%), Positives = 108/363 (29%), Gaps = 22/363 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ E+ L + + + G + P L D+L + + Sbjct: 126 ALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKRGAHIVVATPGRLVDFLEQKMIKL 185 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V + + M + + + A +T SAT Sbjct: 186 QSVKTVVLDEADEMLSMGFKEALETILSATQPDD---------SDSVRAACRTWLFSATM 236 Query: 397 GNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQ---VDDLLSEIRQRAAINERVL 450 + + + + G IE + +++ + Q ++ Sbjct: 237 SSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGRLLQTLPEFYGII 296 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 TK +L + L + G LH D ER ++ + + V+V ++ GL Sbjct: 297 -FCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKVIVATDVAARGL 355 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ +++ V S + IGR RN G AI + ++ + + + Sbjct: 356 DIKDLTHVVN-----HSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQLTLLRRVMQNT 410 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + + + + + ++ + + I D ++S Sbjct: 411 KAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQAEDINFKELSK 470 Query: 630 KAL 632 + L Sbjct: 471 EEL 473 >UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N6Q9_9CHLO Length = 574 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 90/335 (26%), Gaps = 44/335 (13%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 LA E + + + G + P Sbjct: 212 PLALCMSPTRELALQICAEATKFGAAVGCRAVAVYGGAPKWAQASQLQRGCELIIATPGR 271 Query: 325 LFDYLPADG------LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 + D L + + + + M + + Sbjct: 272 MLDMLDMHNKGGNPVTSLASAKVLILDEADRMLDM-----------------GFEKDIRQ 314 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL----------LDPIIEVRP 427 E +T+ +AT + + + D+V G + ++V Sbjct: 315 IAECMPADRRTMLFTATWPKNVQKIAADLLKPDRVKITVGNGGDKLTANKAVTQTVKVIE 374 Query: 428 VATQVDDLLSEIRQRAAIN----ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + L + + +RV++ TK+ + E+L G + D Sbjct: 375 AREKWTEFLKLMEEYKKDGPRHGQRVMIFCNTKKDVNGIGEHLWNEGYAADTVSGDRTQR 434 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER +I R G ++V ++ G+D+ V V D ++ I IGR Sbjct: 435 EREAVIAAFRRGSTTMVVCTDVAARGIDVQGVEAVVNYDFPRDA----CDDYIHRIGRTG 490 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 R G A + AK + ++ Sbjct: 491 RAGAKGVAHTLFTRQDGRFAKELTRILEDADQTVP 525 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats. Identities = 94/669 (14%), Positives = 192/669 (28%), Gaps = 82/669 (12%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 MS F +S F+ + + + L+ G + + GS ++ Sbjct: 8 MSFIFYTSSMFQQQISELK-----LKQLKAGEKRW-IGSLFGSSGALLFKEIVQQHTTLL 61 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ N AQL E++ + P + S ++ I Sbjct: 62 VIVTQNSQHLAQLESELEFY---------------GVKPTIFPDWEILPYDRLSPHQDIV 106 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAEL 179 RL+ M + V++ S S + P L + VG +D RL + Sbjct: 107 SERLAILSNM--PQTGVLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQA 164 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y D + G F VRG ++DI+ A + +R++LFD+E++ L FDP T + + Sbjct: 165 GYHLVDTVYDHGEFAVRGSIMDIY-ASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLK 223 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 +F I P + R + + + + + Sbjct: 224 QFRILPAKEFPLKEGRSIFRERY-----------------AEAFPTANPKKNPIYQDVLD 266 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G+E Y +G E YLP + +++ +++ Sbjct: 267 GIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDA----------LDESLTSCW 316 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 V + ++P+ E L P + S + ++V + Sbjct: 317 KDVVQRYESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRI-HVSSEIIAERVGGINLPV 375 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 +++ + + +N VL+ + E L + L D Sbjct: 376 SQPVKLAVDPKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRPSL-------GD 428 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 I VE ++ + + L GL + L I + Sbjct: 429 IPNVE---GFDAFVKQQYAIAITNAPLDRGLVLSS-QLAVISENQL---------YEH-- 473 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + S I + ++G+ + Sbjct: 474 -------RVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQD 526 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + A P+ + +H+L A+ E+ + Sbjct: 527 HEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVA 586 Query: 660 DQLHQLREL 668 +L ++ Sbjct: 587 AELLHIQAR 595 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 127/443 (28%), Gaps = 43/443 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P V + ++ A + + Q + + Sbjct: 636 DMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFA 695 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + LS G + + L + +V +H + + + Sbjct: 696 D------WPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIV 749 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G R + + ++ATP L + + D + T Sbjct: 750 DEEHRFGVRDKER--------IKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPP 801 Query: 419 LDPIIEVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRY 475 + V DD + I + +V E E + RV Sbjct: 802 ARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAV 861 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E ++++ E++VLV ++ G+D+P + + + ADK G + L Sbjct: 862 AHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQ----L 917 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + PS+ K + +R + G G D Sbjct: 918 HQLRGRVGRSHHQ---AYAYLLVPSI-KHLKGDAEKRLDAIQRASTLG---AGFMLATED 970 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-------LMMQHAQ 648 + G + + + + + L++ ++ + Sbjct: 971 LEIRGAGELLGEQQSGS-------MQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTA 1023 Query: 649 NLEFEEAAQIRDQ-LHQLRELFI 670 + A I D+ L + + + Sbjct: 1024 EINLHMPALIPDEYLGDVHQRLL 1046 >UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gammaproteobacteria RepID=Q12PC3_SHEDO Length = 468 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 61/473 (12%), Positives = 123/473 (26%), Gaps = 54/473 (11%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L ++ L T + + + R Sbjct: 19 LDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQRIISTK 78 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNE-----------------LGYCSGIENYSRFLSGRGP 318 +K + T+ + + G + + Sbjct: 79 ALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSREPHFI 138 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P + D+L L + + + + M A + + Sbjct: 139 VATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINA-------------- 184 Query: 379 FEEFEALAPQTIYVSATPG-NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVAT 430 + QT+ SAT + E + + G + I + Sbjct: 185 --AADHKRRQTLMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLD 242 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 LL + N+++++ T T+ E L L + G L +++ R +I+ Sbjct: 243 HKQALLEHVL-TNETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMD 301 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 G+ +LV ++ GLD+ VSLV D K + IGR R G Sbjct: 302 QFARGQKQILVTTDVASRGLDLINVSLVINFDMPKF-----AEEYVHRIGRTGRAGAKGD 356 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 A+ + R+ + + K D + + +AK +K Sbjct: 357 AVSLVGPKDWDSFIKVQAFLRKTFEFTVIDGLKAKFSGLKAKAKTDKVNSTKRVAKAASK 416 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 + + + + +L E A I+ + Sbjct: 417 AKSPHAKPAPKRDKRFSTGVDVGDAPMRR------KVKPSLIIETDASIQSDI 463 >UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EYB1_DICNV Length = 432 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 107/401 (26%), Gaps = 30/401 (7%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + +T + + L E L T Sbjct: 54 QTGTGKTAAFLLSLMHYLMTNPV---HPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTG 110 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + + + P + D + + + + M+ Sbjct: 111 LVSLAIYGGTSIEHQKKLFQACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMF 170 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + A + SAT E + Sbjct: 171 DLGFIDDVRYLLR---------------QMPPAYERLNLLFSATMPQKVQELAYEHFNAP 215 Query: 412 VVRPTGLLDPI---IEVRPVATQVDDLLSEIRQR--AAINERVLVTTLTKRMAEDLTEYL 466 V I T + + ER ++ TK E L+ L Sbjct: 216 KVVAIESQQTTANNITHYLYHTAKHEKTPLLLGLFARERPERSMIFLNTKHDLERLSLVL 275 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +G L D+ +R +IIRD + G +++V ++ G+ + ++ V D Sbjct: 276 TANGYHNAALSGDVAQKKREQIIRDFQEGTVNIVVATDVAARGIHIDGITHVFNYDLP-- 333 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + IGR AR +G AI + + I + + E + Sbjct: 334 ---QIAEDYVHRIGRTARAGASGTAISFACEEYVYSLPEIEHFLGEKIPVKPIEESLIVD 390 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + +D + ++ + RG +P+ + Sbjct: 391 VIPPSDEALD-ALRNEKESRIRIHNRGNRKPMTKSIRRRRY 430 >UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter oxydans RepID=Q5FNK0_GLUOX Length = 393 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 57/359 (15%), Positives = 104/359 (28%), Gaps = 33/359 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F + L L ++L Sbjct: 62 VGSQTGSGKTAAFVLPMLQKL------TEAGPAPGPRALILEPTRELAAQTAAVCRQLG- 114 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 R + G + S L D + L++ +++ + + Sbjct: 115 RRLSLKTRVICGGTSREQQVQSVSDGVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEAD 174 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + D + T L ++ PQT++ SAT ++ + Sbjct: 175 RLLDEDFSASMTA------LTPYFPDQ----------PPQTVFCSATLPEPVMDLAKRVT 218 Query: 409 VDQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + V I + + D + R R +V TK + L + Sbjct: 219 RNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARLLKHFEGRSIVFARTKNTVDALAK 278 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L H RV LH D R + + R G VLV ++ GLD+P+V LV +D Sbjct: 279 TLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTTDIASRGLDIPDVDLVINMDMP 338 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + + IGR AR G A + + + + + R + + Sbjct: 339 -----ETPEAYVHRIGRTARAGRKGVAFSLINIDERTFLRDVEKHIGYRVRIATEDSLD 392 >UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella grylli RepID=A8PM28_9COXI Length = 421 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 14/299 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + G + + R + G + L ++V + Sbjct: 74 LILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLLTGGVDIIVACPGRLL 133 Query: 345 PQIGGMYR--GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + G + + L E + + Q + SAT Sbjct: 134 DLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRRQNLLFSATMSADIRL 193 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVR-----PVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + V G P + + T +LL I Q +I+ ++ T TK Sbjct: 194 LIDKVLHRPVRIQIGEPKPAVTITQTLFPVSETLKVNLLETILQNHSIHSAII-FTRTKH 252 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A+ L E+L + G + ++ R + R GE LV ++ G+D+ +S Sbjct: 253 RAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKFLVATDVAARGIDIDHLSH 312 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 V D + IGR R G A K ++I +++R ++ Sbjct: 313 VINFDMPN-----TAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQSIEHLQKKRLEE 366 >UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=1 Tax=Ciona intestinalis RepID=UPI000180B7AC Length = 672 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 66/403 (16%), Positives = 119/403 (29%), Gaps = 44/403 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTG--QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ F+ + D + F I + + + L Sbjct: 114 FPIQIQSFNHVYDG---KDVVAQARTGTGKTLSFAIPLVEKLI---MNRCKDYGRPPKVL 167 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + Q ++Q + G + S P + D Sbjct: 168 VMAPTRELAIQVRKDFQDISQGLS---SVCIYGGTPYFQQERSMRGGVDIVVGTPGRIMD 224 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ L + HV + ++ M A K + + E P Sbjct: 225 HVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILG------------YAYTEEREGPP 272 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + S + +E + Q D I Sbjct: 273 QTLLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIG 332 Query: 441 Q----RAAINERVLVTTLTKRMAEDL--TEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + R ++ T TK+ A +L E L++ + LH DI+ +R ++ R Sbjct: 333 NVVQMYSGQHGRAMIFTDTKKDANELVVCEALQQQK--AQVLHGDIEQRQREITLKAYRD 390 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G LV N+ GLD+PE+ LV S I GR R G + + Sbjct: 391 GTVRCLVATNVAARGLDIPEIDLVIQTSPP-----SDIDSYIHRSGRTGRAGRTGVCVCF 445 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 M K + + K + I +N + + Sbjct: 446 YKPREDMMIKKVERVAGIKFKMVGPPQPKDIVKASVNDAIASL 488 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 105/365 (28%), Gaps = 16/365 (4%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + I + TI + + + Q + ++++ + + T+ Sbjct: 24 SPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILDMIDDGSRKIQFLVLCPTREL 83 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YR 352 + + + + G L ++V I I Sbjct: 84 CLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRDKPQIIVGTPGRVIDLINRKALD 143 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + L E L + T SAT S + Sbjct: 144 FSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLFSATMNKEVERISKSYLTAPH 203 Query: 413 VRPTGLLDPII-------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 G ++ + V + + L I A N+ ++ T+ +++ ++ Sbjct: 204 RISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI--DANPNQYSILFCRTRMETQEVADF 261 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L ++G LH D+ +R +++ RL D+LV ++ GLD+ ++ V Sbjct: 262 LMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAARGLDVDSLTHVIHY---- 317 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + GR R G ++ K I + + ++K I Sbjct: 318 -SLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMSTKIDIVEKKVPTGDAI 376 Query: 585 TPQGL 589 + Sbjct: 377 IKAQV 381 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 99/383 (25%), Gaps = 37/383 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + + + I + +E N + L Sbjct: 46 QTGTGKTASFVLPLLHRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYL----- 100 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 M G + + P L D + + S + + + M Sbjct: 101 PLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRML 160 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 E Q + SAT + + D Sbjct: 161 DM-----------------GFIEDINSIIEKLPEQRQNLLFSATLSKQVKALAKSAIPDA 203 Query: 412 VVRPTGLLDPIIEV------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + LLS + Q + L+ TK A L Sbjct: 204 IEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQEQN-WSQALIFIQTKHGAAKLVSQ 262 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 LE+ G HS R +++ D + G+ LV + G+D+ ++ V D Sbjct: 263 LEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDIDALARVINYDLP- 321 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 I IGR R G+AI + K AI +++ Sbjct: 322 ----DEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHVIVRREIAGFEPK 377 Query: 585 TPQGLNKKVVDILALGQNIAKTK 607 + ++D + + + K Sbjct: 378 KV--VPISILDFVPKSASKTERK 398 >UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=C0NLV0_AJECG Length = 615 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 102/353 (28%), Gaps = 24/353 (6%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L E +RL + G + + Sbjct: 217 DCVRAEPLVLIVAPTRELSTQIFDEARRLC-YRSMLRPCVVYGGGPTREQRLELQKGCDV 275 Query: 318 PGEPPPTLFDYLPADGLL-VVDESHVTIPQIGGMYRGDRARKETLVEYG--------FRL 368 P L D++ +L + + + + M D + + + G + Sbjct: 276 LIGTPGRLLDFMEKPHILSLHRVKYTIVDEADEMLHSDWETELSKLMSGGGTYTKQARII 335 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL-------LD 420 + + + E + + SAT E + + D V G + Sbjct: 336 TECRNFLTMSIDTNEDADHRYMMFSATFNKSCRELARKFLAADHVRIRIGRAGSAHLNVS 395 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I + L + R LV TK A+ + +YL G +HSD Sbjct: 396 QNIVYAEDHLKKQALYDLLISM--PPSRTLVFVNTKAQADLIDDYLYNMGLPSTSIHSDR 453 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER + +R + + ++V + GLD+ V V D I IG Sbjct: 454 TQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPS-ATHGGIEEYIHRIG 512 Query: 541 RAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQK-YNEEHGITPQGLN 590 R AR G A + + +A + + ++ + E + Sbjct: 513 RTARIGNEGLATSFYNHDRNSDIAADLVKILLECKQPLPDFLESEKPEGDDVR 565 >UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DU64_ZYGRO Length = 494 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 109/359 (30%), Gaps = 22/359 (6%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A L +K + T+ + E G R G Sbjct: 125 AFAIPILNRLWEDKQPYYACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQA 184 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + + +++ + + + + R + E L K + Sbjct: 185 RELMRKPHIII-ATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVI 243 Query: 384 AL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLLS 437 T SAT + + + + V ++ V + + + Sbjct: 244 PTQDRTTYLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYL 303 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + V++ T TK AE L+ LH D++ +R + + G Sbjct: 304 IYLLNENIGKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRR 363 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+P V +V D +S I +GR AR GK+I + Sbjct: 364 SILVATDVAARGLDIPSVDIVINYDIPV-----DSKSYIHRVGRTARAGRSGKSISLVSQ 418 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + I E ++ ++ ++E + + D + + R K + Sbjct: 419 YDLELILRIEEVLGKKLPKENCDKE-------VVISLRDSVDKANGEVIMELNRRNKEK 470 >UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LY29_9ALVE Length = 367 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 107/363 (29%), Gaps = 38/363 (10%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 + R TI +H+ + LA R++ ++ + E L + Sbjct: 6 LCRTTIVRLSHHSLXLDAAPHRKLTWACVLAPTRELCVQTGQQFEG--LGASINLTTATI 63 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRA 356 G + S P L D+L G + + + + + D Sbjct: 64 V-GGLDMVTQAMSLSKKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFE 122 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 K + QT SAT N + + V Sbjct: 123 DAL-----------------NKIVQSCPRDRQTFLFSATMTNKVSQLQRASLTRPVKCEV 165 Query: 417 GL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 L P + L + + V++ T A+ + L Sbjct: 166 ARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLS--TVMIFVDTCLNAQRMATTLRHL 223 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH + R+ + R G +LV ++ GLD+P V +V D Sbjct: 224 GHNCVCLHGKMTQTHRLGALNQFRAGTRSILVATDVAARGLDIPSVDVVINFDVP----- 278 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 ++ I +GR AR G+++ + + I + ++ + ++ E + P Sbjct: 279 KNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENKQGKKME--EFPEVNEEAPCR 336 Query: 589 LNK 591 + Sbjct: 337 YKR 339 >UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=A9BNS0_DELAS Length = 707 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 96/342 (28%), Gaps = 36/342 (10%) Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + L L + L + + G ++ Sbjct: 193 PTNPRNFKAAVPGALILCPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKLQ 252 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + P L D + + + + + + M Sbjct: 253 -NANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLG-----------------F 294 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD------QVVRPTG-----LLDP 421 + + + A QT+ SAT + + + D +V T + Sbjct: 295 SDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMRVMHDGGSGVKKVTIDTPQEKHASIKQ 354 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 ++ + LL + IN + +V T+ + L L++ G LH + Sbjct: 355 VLFWADNSQHKRKLLDHWLRDTTIN-QAIVFASTQVECDGLANDLQQDGFSAVALHGALS 413 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R + LR G+ VLV ++ G+D+P ++ V G IGR Sbjct: 414 QGLRNRRLMALRSGQVQVLVATDVAARGIDVPTITHVFNY-----GLPMKAEDYTHRIGR 468 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 R G A+ + + I R++ K + Sbjct: 469 TGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPGLE 510 >UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT4_9PLAT Length = 548 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 73/425 (17%), Positives = 129/425 (30%), Gaps = 55/425 (12%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E + D + + + IV + +LA + N Sbjct: 128 ETLSSGVDLDYKMRIGKYDLMASSQTGSGKTLAYVLPIVNRILNSYPKLAMNTLAKSDLN 187 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ ++ + + R + G+ L ++ Sbjct: 188 IQCPSALVLVPTRELVQQILLEFNKMLYRCFPRAVGV-YGGQNRSRQIHELSKGCHFMIA 246 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA----------LAP 387 I + M R D L E L +++ K L Sbjct: 247 TPGRLIDFLDEGMLRMDHCHSVVLDEADRMLDMGFEHQIRKILSNPDYGMPQPSGDGLPR 306 Query: 388 QTIYVSATPGNYELEKSGGDVV--------------DQVV-------------------R 414 QT+ SAT L+ + D VV Sbjct: 307 QTVLFSATFPPSVLQIGRSFLRGNRCISFSVKQSEDDPVVPAWGEALAPTHGSKKIIGQI 366 Query: 415 PTGLLD--PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 P ++ I+E ++V +L+E+ Q +E +LV TKRM E L +L + G + Sbjct: 367 PEKIVQKMKIVEKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFHLYKSGLK 426 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH + R +R LR G +VLV ++ GLD+P + V G + Sbjct: 427 CGRLHGGMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVVN-----VGLPTNL 481 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ--QKYNEEHGITPQGL 589 I +GR R G A+ + + + R+ + Q + E Q Sbjct: 482 DDYIHRVGRTGRFGQCGLALTCVFSDSIHGQRELIHDIRQVAGKYAQDFPTELTAPKQSR 541 Query: 590 NKKVV 594 + ++ Sbjct: 542 RRAIL 546 >UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PH0_SOLUE Length = 422 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 56/376 (14%), Positives = 114/376 (30%), Gaps = 32/376 (8%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIE 307 ++ P +++ A E + E L + G + Sbjct: 56 FLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQ 115 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 P L+D++ + + + + + M Sbjct: 116 LRDIRGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDM-------------- 161 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + QT+ SAT + + V + V G + E Sbjct: 162 ---GFLPTIKRIIAAMPAERQTLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVD 218 Query: 428 VA------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + LL + + LV TK A+ L + L + G + +H D Sbjct: 219 LHLYEVDQDRKFGLLEMMLRE--EQGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRS 276 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R++ ++ + G + VLV ++ G+ + +S V D + I +GR Sbjct: 277 QNQRIQALKGFQEGYYRVLVATDVAARGIHVEGISHVVNFDLP-----QVPEDFIHRVGR 331 Query: 542 AARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R G A + + S I T + K+++ + P+ + V+ + Sbjct: 332 TGRAGAKGTASTFATRSERSEIGRIERTLSVKLKRREVSASIVAAPRKESSAVIVLPHAK 391 Query: 601 QNIAKTKAKGRGKSRP 616 + +GR KS Sbjct: 392 RAEHSRPEQGRNKSFR 407 >UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Plasmodium RepID=A5K071_PLAVI Length = 717 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 106/361 (29%), Gaps = 55/361 (15%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 T + + R + ++++E + ++ Sbjct: 387 TQRSSGNDTHEAERTVYGLILLPTRELCM-------------------QVVDEIKAFEKE 427 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G + + P L D L + + ++ +V I + + Sbjct: 428 LHIRSVAVYGGVPKYTQISNLKKGADIVVATPGRLLDLLESGVIHLLRCIYVVIDEADRL 487 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV- 409 + + K Q ++ +AT + + Sbjct: 488 LDM-----------------GFEKQLKKIMTQVNRNKQLLFFTATWPEQVRKLAYQFSSF 530 Query: 410 DQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D V G + V + + L + ++ ++L+ TKR + L Sbjct: 531 DPVKIQIGKSELTANKNIQQSVVISSSIDLKKKLLDWLKQNYEGNKILIFCDTKRNCDSL 590 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L H +H D + ER I+ + R ++LV ++ GLD+ +S+V D Sbjct: 591 CKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCNILVATDVASRGLDIKNISVVVNYD 650 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-----DKITPSMAKAIGETERRREKQQ 576 + I IGR R G+A+L+ A+ + + + Sbjct: 651 LPN-----TIEDYIHRIGRTGRAGQKGRAVLFFPYDYYVPQKGRFARDLVKLLSKANHAV 705 Query: 577 K 577 Sbjct: 706 P 706 >UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n=2 Tax=Giardia intestinalis RepID=A8B6X3_GIALA Length = 391 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 57/358 (15%), Positives = 117/358 (32%), Gaps = 40/358 (11%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 FTI + + ELA + +++ Sbjct: 62 AQAQSGTGKTAAFTIGMLQRIDIGLKSPQAIILSPTRELALQTLKVVDGIGS-------- 113 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + +++ +G ++ + S P L L + + V + + Sbjct: 114 --RLKVQVAQCIGGTQVDDDIAAAQSCHLIVATPGRLLSLLQKKYVTTSNVKMVVLDEAD 171 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + +F Q + VSAT LE + + Sbjct: 172 EMLSRGFTEQIV-----------------SIMKFMNADIQIVLVSATLPPEILELTRQFM 214 Query: 409 VDQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D V + V +++ +I + ++ + V+ + ++L Sbjct: 215 RDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLSVQQGVI-FCNSIGRVKEL 273 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E L+ G + +HS++D ER +I+ + R G+ +L+ N++ G+D+ VSLV D Sbjct: 274 AEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLVINYD 333 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 +E + + IGR+ R G AI + +AI + + + Sbjct: 334 IPRE-----PETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQAITDKFNVTTENLPED 386 >UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes RepID=B2AUP6_PODAN Length = 604 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 44/377 (11%), Positives = 100/377 (26%), Gaps = 26/377 (6%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + + I + +++ + + Sbjct: 172 IKMGYDVVAVAQTGSGKTAAYLIPILNQLMGKAKKLAATRPNPAAFREGVDQAVRAE--- 228 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + +++ E + G P L +++ Sbjct: 229 PLVVIVCPSRELAVQVFTEARKFCYRTMLRPCV--IYGGGPSSEQRAQLQKGCDVLIASP 286 Query: 341 HVTIPQIG--GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE-------FEALAPQTIY 391 I + + R R L E L + + + Sbjct: 287 GRLIDFMDDTRLLTLRRVRYMVLDEADEMLHDDWKGDFDTIMSGGGELLPIQRGNVRYML 346 Query: 392 VSATPGNYELEKSGGDVVD-QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + + V G + ++ + L+ + Sbjct: 347 FSATFPKQFRDLAKNHLAETHVRLRVGRAGSTHRNIKQVVYETAPFNKKSALIDLLESL- 405 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 R ++ +KR A++L ++L +H+D ER +R R G +L+ Sbjct: 406 -PPTRTIIFVNSKRTADELDDFLYNLKFPCTSMHADRTQKEREAALRGFRSGLAPILITT 464 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 + G+D+ V V D + IGR R G A + + +A Sbjct: 465 GVTARGIDVRNVMHVINYDLPSMDYGG-IEEYTHRIGRTGRIGHRGMASSFFTERDEPIA 523 Query: 563 KAIGETERRREKQQKYN 579 + T ++ Sbjct: 524 SVLTRTLLETGQEIPDF 540 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 84/645 (13%), Positives = 182/645 (28%), Gaps = 120/645 (18%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 I E L L G+ GS +F I + + + P +++ +K AA + ++ Sbjct: 6 SGLITEKEGVLPTETKTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDL 65 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDV 136 + F E+ V + P+S + + + +R + + + + Sbjct: 66 ESFIGEDRVL-------------FYPASYKKPYQHSQTDNANILLRAEVLQRFGKKGKPL 112 Query: 137 VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +V+ AI+ K L+L G +I + L E + R D G F V Sbjct: 113 CIVSYPEAIFEKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D+F D R+E F EEVE + FD ++ + ++ +I P + Sbjct: 173 RGGIVDVFSYAYD-HPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDTLTK 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ + + +E +FD +E + Sbjct: 232 RQDFFSFTDKKTTVLIRKPGVLKQKIESLYKEAVLKFD-----------TLEGEIAQIPP 280 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 LF L + ++ I Q+G + D A L+++ A + + Sbjct: 281 ENLYVQSKELFGALEKHQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQPAFNKK 340 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + ++ Sbjct: 341 FPLI--------------------IERLAQNNLK-------------------------- 354 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + +++ A+ ++ E Sbjct: 355 ----------GTNNYLFCASEQQAKRFSDIF--------------------EAAEKEVPY 384 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 + VL + G ++P + L D + +AI Sbjct: 385 KTVVL----PIHRGFEIPLLHLACYTDHEIF------ERY-HKFHIKNGFDKKEAIS--- 430 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + K+ I +G ++ + + +++ K Sbjct: 431 LSELNKLEIGDYVTHIDHGIGKFGGLQKIAVEGKKQEAIKLSYGERDVLYVSIHSLHKIA 490 Query: 616 PIVEPDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 D P + A ++ + + + + A +L A + Sbjct: 491 KFNGKDGSPPKIYKLGSGAWKKVKEKTKSRVKKLAFDLIQIYAKR 535 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 84/664 (12%), Positives = 170/664 (25%), Gaps = 145/664 (21%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 P + + + L G + T+ G G A++ L +++ P + Sbjct: 15 LVPVLSRSDGFAAVTAALRSGQSG-TIDGAWGGSCALAAASIATALDSVLLIVLPRLSEI 73 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 + G++ F P+ +T ++ + + RL + Sbjct: 74 DEFTGDLASFLG--------------TIPEIFPAWETLPDEHDVADT-VFGGRLRVLSRL 118 Query: 131 L-----ERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 E V+V S A+ + VG ID A ++ L E + R Sbjct: 119 QHSGGNESTPQVIVTSFPALLQPVPSRKQREAATRRIQVGDEIDTDAFMKWLLERGFERT 178 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 G F + G ++D++ +S + +R+E F +EVE + FD T + + T + + Sbjct: 179 TAIQLPGEFSMHGGILDLYSPDSA-LPIRIEFFGDEVESIRQFDVETQRTLETCQQVDLT 237 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + E+ Sbjct: 238 LISPVPASVSGRQLQTPNRDED-------------------------------------- 259 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G +L D LP + + + E I + + Sbjct: 260 --------------GTTSESLLDNLPPEACIALIELPELIDEGKRYLDRLENP---RGLF 302 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 A A T + Sbjct: 303 SVPATMARCTDFPSVTIAPISAESTEISCHLQIESVERFTRS------------------ 344 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 +L E+ + VLV + + L E L+E S++D E Sbjct: 345 -------KSQMLEELASIIGPQDTVLVCCHNQGEQDRLQELLDE---------SELDLSE 388 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R++ I L G + LV + D + G + R + Sbjct: 389 RVKT-------------CIGNLALGFRIVPEHLVVLSDHELFGRA----DIRHK-PRKRK 430 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + D + R + + E+ G ++++ Sbjct: 431 VESRAIDSFLDLNVGDFVVHLSHGI-ARFRGLELLEKEG--------------YREEHLS 475 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ V + ++ +L + E + + + Sbjct: 476 LEFRDKVQMYVPVSLVHLVQKYIGGGKHVPRLSKLGTKSWASKKEKAAEAVRDMASDMLR 535 Query: 665 LREL 668 L+ Sbjct: 536 LQAQ 539 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 67/437 (15%), Positives = 128/437 (29%), Gaps = 40/437 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 P + + I+ A + Q T+ Sbjct: 575 SDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPTTVLAEQHTRTF 634 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E M + LS + + + + A + +V +H I + Sbjct: 635 SERMADYPIT------IEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKDIKFKDL 688 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G L L+ + +SATP L S + D Sbjct: 689 GLLIIDEEQRFGVEAKEMLKRLRLQI--------DVLTLSATPVPRTLHMSLLGIRDISN 740 Query: 414 RPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 T D + IE R + + + + N +V + + +++ Sbjct: 741 LTTAPRDRVPIETRITRFDPELIRHAMVRELNRNGQVYFVHNRVHDLQKYADRIQQIVPE 800 Query: 473 V--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 H + E + + G+ D+ V ++ GLD+P + + I DA G Sbjct: 801 ASIGIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLS- 859 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R+ + +A Y M I +R K + E G G Sbjct: 860 ---DLHQLRGRVGRSHH-RAYCYLLLRDGQMLTPI---AAKRLKAIEEYSELG---AGFK 909 Query: 591 KKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + D+ G I T+ G V ++ + L+ +L+ ++ + Sbjct: 910 IAMRDLEIRGAGNILGTEQSG--------HIAAVGYELYCQLLENACRKLKNEPIREHHH 961 Query: 650 LEFEE---AAQIRDQLH 663 + + A D + Sbjct: 962 VAIDLPCTAYLPSDYIP 978 >UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG7_ENCCU Length = 503 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 126/375 (33%), Gaps = 44/375 (11%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 +++ + + G+ + + ++ P + M++ + + + + L E ++ Sbjct: 123 IQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPIIERHRQMKKPQACIISPTRELCEQIRV 182 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + + + ++ + P L D L + + + Sbjct: 183 EASKLVAGSR------IRVVSIYGKKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLSEIR 236 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + + F QT SAT Sbjct: 237 MFVLDEADKLLDMG-----------------FEIPIREIHGFVPKNTQTCLFSATYSPKL 279 Query: 401 LEKSGGDVV-DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIR----------QRAAIN 446 + D+V + E+ V + LL+ ++ + Sbjct: 280 TRMINYFLPEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQP 339 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++VLV K ++ + L++ G LH D + +R E ++ R G F V+V ++ Sbjct: 340 DKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVA 399 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKA 564 G+D+ +V LV D + + I IGR R +GK+I + D +T + KA Sbjct: 400 ARGIDIKDVKLVINYDIP-----KDIKEYIHRIGRTGREGKSGKSISFYDGGMTADLKKA 454 Query: 565 IGETERRREKQQKYN 579 + E R + Sbjct: 455 LVEVLRESKNAVPPF 469 >UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KNF3_TOXGO Length = 652 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 62/381 (16%), Positives = 117/381 (30%), Gaps = 34/381 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 +++T P + + + + +E L L E L Sbjct: 260 QHLLATAPTGSGKTFAFLLPLLALLKKPGKEFARLLVVCPSRELAKQTQREFDSLAGARG 319 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 F + + S + S+ P L +L + + H+ + + + Sbjct: 320 F-RCRLLDEQKQSVDQAASQAKRVDAVVTTPLRLVQFLRDGRVSLAQCRHIVLDEADKLL 378 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + G PS Q SAT L + + + Sbjct: 379 DLG---QLDEILAGCTFPS----------------LQVSLFSATLPPDVLRLADSLLHNP 419 Query: 412 VVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTE 464 V G + I + T + L +R + VL+ +K A+ L Sbjct: 420 VHISIGSPNAAATSIEQELLFCTNEEGKLLALRTLHLTGKFVPPVLIFVQSKERAKQLYC 479 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G V +H+D +R + + R G+ VL+ +++ G+D V LV D Sbjct: 480 ELVYDGIFVECIHADKTKKQRDDTVEAFRRGQIWVLICTDVMARGVDFKNVELVINYD-- 537 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 F +S I IGR R G+AI + +++ ++ + E Sbjct: 538 ---FPQSAAVYIHRIGRTGRAGRQGRAITFYTTADIPNLRSVVGVMQQT-STCEVPEWLQ 593 Query: 584 ITPQGLNKKVVDILALGQNIA 604 + K+ D+ Sbjct: 594 KVTKMTAKQKRDLQRRAPERK 614 >UniRef50_Q23WN3 Helicase conserved C-terminal domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23WN3_TETTH Length = 602 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 110/357 (30%), Gaps = 17/357 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + LA Q+L + + Sbjct: 182 TGQGKTIVFLLPALVMAIEHEMNMPLFRGEGPLAIIIVPSTYELACYYSQKLQEAGYPQI 241 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-----ADGLLVVDESHVTIPQIGG 349 +G ++ ++ G + + + L +V T + Sbjct: 242 RCSLSIGGMDMMQQIAQVREGVHLIKYYGLMNNTFEIYEVVELQLDMVGTPGRTSDMVDK 301 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + R L E L + + A QT+ S+T + + + Sbjct: 302 QKFNMNLCRYIVLDEADRLLDMIFEKEIRNIIDHVPGARQTLLFSSTMPKKVQDFAKQAL 361 Query: 409 VDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 +D ++ G + I+ Q + L I VL+ +D+ E Sbjct: 362 IDPIIVNVGRAGQVNLNVIQEVEYVKQEEKLQYLISCLQKTKPPVLIFCDKSNDVDDIHE 421 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL G V LH ER + +++ + + DVLV ++ +GLD P V V D Sbjct: 422 YLLLKGIDVTSLHGGKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHVINFDMP 481 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYN 579 + S + IGR R G+A + +K ++ + ++ + Sbjct: 482 -----KEIESYVHRIGRTGRLGKTGRATTFVNKQQDENILSDLKMLLMEAKQPIPHF 533 >UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QAF6_MALGO Length = 885 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 108/380 (28%), Gaps = 47/380 (12%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G + P + D L A+ G + R Sbjct: 359 CAYGGTPISEQIGEMKKLVEVVVATPGRMIDLLTANS--------------GRVTNMQRV 404 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRP 415 L E + + +K QT+ SAT + + + + Sbjct: 405 TYLVLDEADRMFDLGFEPQVMKILGLIRPDRQTVLFSATFPKPMESLARKMLRHEPLEVI 464 Query: 416 TG-------LLDPIIEVRPVATQVDDLLSEI--RQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I+EVRP +++ LL + + R L+ + A++L L Sbjct: 465 VGGRSVVAAEIRQIVEVRPDSSKFHRLLEILGQLYHHDEDARTLIFVDRQDAADELMHML 524 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G LH D +R + D + G +L ++ GLD+ ++ LV D Sbjct: 525 MKRGYPTMSLHGGKDQADRDTTLADFKAGIVPILTATSVAARGLDVKQLKLVVNYDVPNH 584 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + GR R G + + AK I R + E Sbjct: 585 -----LEDYVHRAGRTGRAGNQGTCVTFITPEQDRYAKDIVAALRASKAT--VPPELEAL 637 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + + + GRG R S + L Q + Sbjct: 638 ASQFK---EKLQQGKAHASGSGFGGRGLERLEA---------SRERLLQAQASIFIEDED 685 Query: 646 HAQNLEFEEAAQIRDQLHQL 665 AA+ D+ +L Sbjct: 686 ADPE---AVAARAADETQRL 702 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 102/365 (27%), Gaps = 16/365 (4%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + I + TI + + Q + ++++ + + T+ Sbjct: 24 SPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILDMIDDTSRKIQLLVLCPTREL 83 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YR 352 +++ + G L ++V I I Sbjct: 84 CLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKDKPQIIVGTPGRVIDLINRKALD 143 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 L E L + QT SAT S + Sbjct: 144 FSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLFSATMNKEVERISKNYLTKPH 203 Query: 413 VRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 G ++ + V + + L I A N+ ++ T+ +++ ++ Sbjct: 204 RISVGSINEVKKNITHEYYVVGYRQKKEALKRLI--DANPNQYSIIFCRTRMETQEVADF 261 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L ++G LH D+ +R +++ RL D+LV ++ GLD+ ++ V Sbjct: 262 LMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAARGLDVNSLTHVIH----- 316 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + GR R G ++ K I + ++ I Sbjct: 317 FSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSATKIEIHERTIPTGDDI 376 Query: 585 TPQGL 589 + Sbjct: 377 IKAQV 381 >UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasmida RepID=Q4UA43_THEAN Length = 757 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 46/386 (11%), Positives = 108/386 (27%), Gaps = 26/386 (6%) Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 + I P + I + +E+ + + F + T+ Sbjct: 356 KAGYIKPTPIQMQAIPIALEMR-DLIGIAVT-------GSGKTAAFVLPMLTYVKKLPPL 407 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + + L L E + + + G + + + Sbjct: 408 DDETSLDGPYALILAPSRELALQIYDETVKFSAFCS-CRSVAVVGGRNAESQAFELRKGC 466 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P + D L ++ ++V + + M + + D Sbjct: 467 EIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNLKDRD 526 Query: 376 PLKFEEF-------EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEV 425 E T SAT + + + G + I Sbjct: 527 ESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKTSITQ 586 Query: 426 RPVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + Q + + +++ K+ + +T+++ + G R LH Sbjct: 587 QLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVITKHITKIGYRAVSLHGGKTQES 646 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + + + G +D+LV +++ GLD+ + +V D + ++ IGR R Sbjct: 647 REDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMP-----KDIQTYTHRIGRTGR 701 Query: 545 NV-NGKAILYGDKITPSMAKAIGETE 569 G +I + + + + Sbjct: 702 AGLKGLSISFVTDADVDLFYDLKQLL 727 >UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EED4_9EURY Length = 435 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 114/393 (29%), Gaps = 25/393 (6%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +E N+ +T + L++ + G Sbjct: 53 AFVIPILNSIEKNERQAAMIITPTRELALQVTEVVREIGRHMQLKA--VTIYGGASINYQ 110 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + +++ I + D R L E L + Sbjct: 111 IREIRNGANIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLP 170 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLS 437 QT++ SAT + + + + + + + LL+ Sbjct: 171 KKRQTMFFSATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLA 230 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + E+ ++ T+R AE + ++ G + +H + R + + G Sbjct: 231 YLNE--KKPEKAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-V 287 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++L+ N+ GLD+ VS + DA+ ++ + +GR+AR +GKA Sbjct: 288 NMLIATNVAARGLDIDNVSDIINFDAET-----DPKAYVHRVGRSARMGKSGKAFTIFTH 342 Query: 557 ITPSMAKAIGETERRREKQQKYN------EEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + I + + +++ + + + ++ L + +G Sbjct: 343 GEKYLVYEIENYAKVKLSYLEFDLSTYRTKMNEFYKENGKQEFETALRRSNFSSNRNFRG 402 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 R N S + H Sbjct: 403 NNPHRREFGRSNNGGHYSKFKRDRFKHNYSKED 435 >UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 Tax=Metazoa RepID=DDX49_HUMAN Length = 483 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 57/394 (14%), Positives = 126/394 (31%), Gaps = 33/394 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVV 337 ++ E+ R+ + + + G + P L D+L ++ + Sbjct: 85 QIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIK 144 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + + +E QT+ SAT Sbjct: 145 KIRFLVMDEADRLLEQGCTDFTVDLEA--------------ILAAVPARRQTLLFSATLT 190 Query: 398 NYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INER 448 + E G V LD + P + L+ I++ + Sbjct: 191 DTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWS 250 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +++ T T + + L L + LHS + ER + + + +L+ ++ Sbjct: 251 IIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASR 310 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+P V +V + + I +GR AR G+AI + + AI E Sbjct: 311 GLDIPTVQVVINHNTPGL-----PKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEE 365 Query: 568 TERRREKQQKYNEEH---GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +++ ++ E +T + ++ +I + + K + K + D Sbjct: 366 QIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDL 425 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 L + + + + L+ ++A + Sbjct: 426 EAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRA 459 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 49/365 (13%), Positives = 102/365 (27%), Gaps = 34/365 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIV--QAMEEIKEELAARRKVLLENNKLLEEQRL 286 + F + + + + M+ + + E + + + + Sbjct: 45 VSSQTGSGKTAAFLLPTLHNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAI 104 Query: 287 TQRTQFDLEMMNE-LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + +G + + + P L D + L + + + Sbjct: 105 AFVRHMKGVRIAAIMGGMPFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVD 164 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M + + A QT+ SAT + + + Sbjct: 165 EADRMLDLGFS-----------------EDLEAISDLAANRGQTLMFSATFADRIIRLAE 207 Query: 406 GDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + + LL+ ++ + +V T+ Sbjct: 208 RMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLADETLD-QAVVFASTQED 266 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + L E L E G V LH + R +R +R G +LV ++ GLD+P +S V Sbjct: 267 TDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVATDVAARGLDVPTISHV 326 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 G + IGR R G+AI +A+ + R + Sbjct: 327 IN-----FGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALEDYLEARLNVSE 381 Query: 578 YNEEH 582 Sbjct: 382 IEGLE 386 >UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMG6_9PAST Length = 449 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 103/356 (28%), Gaps = 30/356 (8%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F H +T + L L + + L++ Sbjct: 77 QAQTGTGKTMAFLTATFHHLLTHQSEKN---TSQPRALILAPTRELAVQINNDAELLSKA 133 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + G + + + DY+ + + V + + Sbjct: 134 TN-LKTGLAYGGDGYEKQLKTIEKGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADR 192 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ + + P A T+ SAT E + D+ Sbjct: 193 MFDLGFIKDIRYLLRKCPAPE---------------ARLTMLFSATLSYKVRELAFEDMN 237 Query: 410 DQVVRPTGLLDPI-----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 D L E+ + Q L ER +V TK E++ Sbjct: 238 DPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLLEEEWPERCIVFANTKHRCEEIWG 297 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL G RV L D+ +R+ +++ G+ D+LV ++ GL + +V+ V D Sbjct: 298 YLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLP 357 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + IGR R +G +I + + AI +Y+ Sbjct: 358 -----DDCEDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIENYIAHSIPVSQYD 408 >UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiothermus RepID=C1XGK2_MEIRU Length = 556 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 68/391 (17%), Positives = 114/391 (29%), Gaps = 18/391 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + +A R E + LT + L Sbjct: 27 IQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAARERGRAPRALILTPTRELAL 86 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-QIGGMYRG 353 ++ EL + + ++ G + L +VV I + Sbjct: 87 QVAKELEWLAPH----LTITPIYGGTGYGKQAEALKRGTDVVVATPGRAIDYLEQRVLDL 142 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 R L E L + + E QT+ SAT + S + Sbjct: 143 SRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFSATLPTWARRLSERYQKAAIH 202 Query: 414 RPTGLLDPI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + I + ++ +LS++ A ER +V T TK DL LE Sbjct: 203 INVIKDEAISYEEVAIQAPIHNRLSVLSDLL-FAYAPERTIVFTSTKAECNDLALGLESR 261 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 +H D+ ++R ++ R G VLV ++ GLD+PEV LV Sbjct: 262 AHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGLDIPEVDLVVHYRLP----- 316 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 S + GR R GK ++ + + +R K+ + Sbjct: 317 DQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRNFKRVNPPTPEEVMAAK 376 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 ++ Q A K R I E Sbjct: 377 W--AMLARRIAKQPEADKKLWREQAERLIAE 405 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 101/326 (30%), Gaps = 17/326 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ + + + T+ + ++ L G+ Sbjct: 50 TGKTLAFLLPIIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIF-GGQ 108 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L L++ + + + K L E + Sbjct: 109 DIERQKQKLRRHPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETL 168 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQV 432 E A Q + SAT + S + +D +I T++ Sbjct: 169 LEATAADRQLMLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKI 228 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L I Q +V TK+ A +T L G V LH D+ V+R +++ Sbjct: 229 DKLCEIINQE--QPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRF 286 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R E +L ++ GLD+ V+ V D S I IGR R GKAI Sbjct: 287 RKAELQILCATDIAARGLDIEGVTHVFNYDIPH-----DAESYIHRIGRTGRAGERGKAI 341 Query: 552 LYGDKITPSMAKAIGETERRREKQQK 577 + + + + I + R ++Q+ Sbjct: 342 TFVNARQYDLLRRIEGGIKDRIRKQR 367 >UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF9CE Length = 1357 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 69/434 (15%), Positives = 133/434 (30%), Gaps = 42/434 (9%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ L + ++ E Y + G L Sbjct: 772 QRPLQEGDGPIGLILVPTRELATQIYLEAKPFLKAYKY--EIVAVFGGTGIKGQLSELKR 829 Query: 332 DGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +VV I G + R + E + + K Sbjct: 830 GCEIVVATPGRLIDVLTTSNGKITNLKRITMVVIDEADRMFDLGFEPQIAKILATTRPDK 889 Query: 388 QTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V G + +IE+R +T++ LL + Sbjct: 890 QTVLFSATFPKNVENLAKKLMRHKPVEVVVGARGQACTNITQLIEIRDESTRLFRLLE-L 948 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +V++ + + L + L LH+ +D +R+ + D R G + + Sbjct: 949 LGIYTEQGQVIIFVDKQIEVDFLYQELRSRYYIPTILHAGVDAEDRVNNLLDFRKGIYKI 1008 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ +L GLD+ V LV I IGR R G A+ + Sbjct: 1009 LIATSLSSRGLDVKNVVLVVNYKCPNH-----IEDYIHRIGRTGRAGNKGTAVTFIGPEE 1063 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL--------GQNIAKTKAKG 610 + + + +R ++ K EE + KKV A G+ + + Sbjct: 1064 DKYSLDLIKALKRSDQ--KVPEELLRMGEEFKKKVKMGEAKIYNNANMQGKGFNFDEEER 1121 Query: 611 RGKSR-PIVEPDNVPMDMSPKALQ-------QKIHELEGLMMQHAQNLEFEEAAQI---R 659 ++ + + + M + +K E + L F++ I + Sbjct: 1122 DKMNQMKYEQKKFLALQMGLDIEERDDDFVFKKAQEESAKDKKDKDELTFQQKLHIVKTQ 1181 Query: 660 DQLHQLRELFIAAS 673 D+ +RE + + Sbjct: 1182 DEYKDIREELFSKA 1195 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 64/389 (16%), Positives = 125/389 (32%), Gaps = 25/389 (6%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + +A+++ + G+TG+ K+ +A R T ++ + Sbjct: 3 PLFDAIQTDKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGES 62 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 +QL ++ P P +P+ D + + + RL Sbjct: 63 LSQLKSDLATLLPAA-------------PVLELPALDFVTFSVTAKSLELTAQRLDIYSR 109 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L V+V+A+ AI P + + + L G I+ +L L Y R DQ Sbjct: 110 LLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVD 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F RG +IDIFP + LR+ELF +E++ L FDP T + + + + I P Sbjct: 170 NVGQFSARGGIIDIFPL-NRPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMP--- 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + E + + A V E ++ E + +++ Sbjct: 226 -IIEPEHSGKRTTVLSYLPADGCVVFDEPARVREAMAKLIKENPEIKRRVYTWPDIAAAA 284 Query: 309 ------YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 Y L + P P + + + + ++ + Sbjct: 285 QAFNVVYLSLLLQKTPYTEPGEIHSITAKGIAPFHRQMEMLVDELKAWLDRKLQPVIFMT 344 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + + T+ Sbjct: 345 NRDKAVHLQHNLTQEGVSAVFSEQLTTLV 373 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/444 (15%), Positives = 128/444 (28%), Gaps = 43/444 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 P + + I+ A + Q Q Sbjct: 560 SEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQHYQTF 619 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 G+ ++ SRF S + + A + V+ +H + Sbjct: 620 SSRFA--GFGPVVDVISRFRSPKEQKAT----LAKVRAGQVDVLIGTHRLLNPDVQFKDL 673 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + + + +SATP L S D + Sbjct: 674 GLLIVDEE--------QRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSI 725 Query: 414 RPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 T + ++ V + + IR+ +V + + + L E Sbjct: 726 IETPPEERYPVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPD 785 Query: 473 VR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R H + ++ D G +D+LV +++ GLD+P + + + DADK G + Sbjct: 786 ARIGVAHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQ 845 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R A Y K + E +R + K E G G Sbjct: 846 ----LYQMRGRVGRTHR-MAYAYFT---YQRDKVLTEVAEKRLQAIKEFAELG---AGFK 894 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQN 649 + D+ G + +V +M + L + + EL G ++Q Sbjct: 895 IAMRDLEIRGAGNILGPQQHG-------HILSVGFEMYCRLLDEAVQELRTGKVVQPPPE 947 Query: 650 LEFE-------EAAQIRDQLHQLR 666 E I D +H++ Sbjct: 948 PVLEFNVDAYLSGDYISDAMHKIE 971 Score = 93.0 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 34/241 (14%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + P Q++ L+ E++ + ++ + A L L + G + Sbjct: 315 IAPFHRQMEMLVDELKAWLDRKLQPVIFMTNRDKAVHLQHNLTQEGVSAVF--------- 365 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 E + L G V++ + +L G ++P L + + D G Q G R Sbjct: 366 -SEQLTTLVPGT--VMITVGVLAGGFELPHAKLAVLTEKDIFGR--------QKKGIRPR 414 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+ I Y K KY + G+++ I G++ Sbjct: 415 AAKGQQITYF-----RDLKVGDYVVHVNHGIGKYAGVETLEVGGVHRDYFLIRYAGEDKI 469 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P + + + + ++H + G Q A + A + +L Sbjct: 470 ---------YVPTDQVHLLQKYIGAEGEVPRLHRMGGTEWQKATSRAKAAVADLAKELIA 520 Query: 665 L 665 L Sbjct: 521 L 521 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 82/657 (12%), Positives = 197/657 (29%), Gaps = 85/657 (12%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 ++ + ++E+ + + + GK + + + + + K Sbjct: 2 LKIFEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQK---- 57 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 + E+ + + + + + + + ++ E R + Sbjct: 58 ------------SKSEWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIF 105 Query: 132 ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 E V++ S + + L L + L L Y R ++G Sbjct: 106 EEGFDVLILSPQNLLEKYS--DFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKG 163 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F +G ++DI+P S +R+E F + ++ + FD T + + IY + Sbjct: 164 QFSQKGGIVDIYPIFS-KYPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDL 222 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + K ++ + K L+ + + E + G E Sbjct: 223 ------------SIDFSDGIKKIVADFKKLQNKLKGDARKNLEESFKD--VIDGAELKID 268 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL-PS 370 L + ++FD +++ + + + + L+E G+ L Sbjct: 269 RLYPYY-YQNFRSIFDIFGDCFVIIDEYTQ-VYGSLKTFEEQTEDLYKDLLEKGYVLTKM 326 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 A + + + + A V+ + + E+ Sbjct: 327 AGCYFKVYDILEKLSSSIILQTFAQSIKEIQ-----------VKDIFSFNNLREIPSYNG 375 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 Q + L+ +I+ + + V ++ EDL LE+ +D +R + Sbjct: 376 QKELLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEFNK--ADEVLTDRQGVYL 433 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVA--ILDADKEGFLRSERSLIQTIGRAARNVNG 548 R + +G+++ + V + +K+ ++ R + Sbjct: 434 LPRS-----------VEKGIEIQNLKWVCLSFFNVEKKKGKDVKK----------RPKSK 472 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 K Y T K R K+ IT +G+ K+ + + A Sbjct: 473 KETFY----TIEDLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLE---------YA 519 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P D + + + K+ +L L Q + + + + +L Sbjct: 520 NNSYLYVPTTNLDVIEKYIGTDDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDIVEL 576 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 132/440 (30%), Gaps = 38/440 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + ++ A + Q ++ Sbjct: 618 KKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHYMTFVQR 677 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + + + + + L + ++ +H + Sbjct: 678 MKDFPITIEVLSRLKSE------SQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGLL 731 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L + + D + Sbjct: 732 IIDEE--------HKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIED 783 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GER 472 D V + ++ I + + +V + E++ L+ + Sbjct: 784 PPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIK 843 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + Y H +D + E++ D G++DVLV ++ G+DMP V+ + + DAD+ G + Sbjct: 844 IAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ-- 901 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 L Q GR R+ A Y K + E +R K E G G Sbjct: 902 --LYQLRGRVGRSNK-LAYAYFTF---RKDKVLSEEAAKRLSAIKEFTELG---SGFKIA 952 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNL 650 + D+ G K + + V DM + L ++I L+G + + Sbjct: 953 MRDLEIRGAGSIVGKLQHG-------HINAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQI 1005 Query: 651 EFEEAAQIRDQLHQLRELFI 670 + A I + + I Sbjct: 1006 DIRVNAYISSEYIDDDKERI 1025 >UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1ECQ6_9CHLO Length = 401 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 85/301 (28%), Gaps = 35/301 (11%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + EL G P L D + L + + + + M Sbjct: 121 PLHKQKEELVAAHGRRKRGAATGTV-VVATPGRLCDLMKQGSLSLRRCDFIVLDEADRML 179 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + QT+ +AT + + + Sbjct: 180 EMGFEPQLKEI--------------FGELPSSESGRQTLLFTATWPKAVRKMAASYLAKD 225 Query: 412 VVRPTGLLD-------------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 G D V + D + ++ RV+ TKR Sbjct: 226 TESSEGNGDGGDGAELAANKAVSQRFVHATDDEKDKKMYDVLCELPEGSRVVAFANTKRR 285 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 E+L + + G +H D ER ++ + ++ ++ GLD+ V+ V Sbjct: 286 VENLAKTFWDFGFGTVSVHGDKKQNEREAALKKFVDNQCPLMFATDVAARGLDIKGVTHV 345 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM-AKAIGETERRREKQQ 576 D R S + IGR R G+++ + + A A+ + R ++ Sbjct: 346 VNFDM-----ARDVESYVHRIGRTGRAGELGESVTFWNPDYDKECAPALCKIARDAGQEV 400 Query: 577 K 577 Sbjct: 401 P 401 >UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleostomi RepID=B1H1W5_XENLA Length = 638 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 63/373 (16%), Positives = 121/373 (32%), Gaps = 35/373 (9%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++ P ++ L L + + L + + G + Sbjct: 277 FLLPAIIRCLEKKDSPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQI 336 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + + P L + + D + + D + + + M + ++ Sbjct: 337 HRLKQAVQIIIATPGRLLEIINQDCVNLGDLKILIVDEADTMLKMGFQQQV--------- 387 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 L E + QTI VSAT + + D V G + Sbjct: 388 --------LDILEHASHDHQTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQ 439 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDI 480 I+ ++ L + VLV + A+ L++ + + G +HSD Sbjct: 440 IVLWVEEPSKKKKLFEILNDSKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDK 499 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +ERM+I++ L GE+DV+V +L GLD+ V LV D S + IG Sbjct: 500 SQMERMKILQGLLQGEYDVVVSTGVLGRGLDLVNVKLVVNFDMP-----PSMDEYVHQIG 554 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 RA R G AI ++ S+ + + + + ++ + Sbjct: 555 RAGRLGHRGTAITLINRNNRSLFWDLVKRVQPTGSLLPP----QLLNSPYLQEQKKVDER 610 Query: 600 GQNIAKTKAKGRG 612 G+ + G Sbjct: 611 GRRDKEKVVTGDQ 623 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 86/619 (13%), Positives = 191/619 (30%), Gaps = 92/619 (14%) Query: 48 TIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 + ++ P ++ + +AA+L EM F V + +P +T Sbjct: 21 FYCSELSAKNTPLVIFTKDSYVAARLQQEMLWFNQNLVV-------------SMIPDWET 67 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMI 166 S + + RL + + ++ +++ SA+ L + + G Sbjct: 68 LPYDSVSPHPDLISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQK 127 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +D ++ L E Y + F G F VRG +ID+FP S I R++ FD E+E + Sbjct: 128 VDLESLKMVLIENGYINVQKVFHPGEFAVRGGLIDLFPMGS-TIPYRIDFFDTEIESIKT 186 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T + + + I P I + +E + Sbjct: 187 FDVETQKSIYPTNKIEILPARECPLTELSIETFRKNYRERFSGDPSK------------- 233 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 ++ +G+E Y + T+FDYLP D L+ V Sbjct: 234 ----SPIYTNISNKIPFAGMEWYLPLFY-----QETNTIFDYLPDDTLIDVP-------- 276 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 ++ + ++ R + E + ++ + + Sbjct: 277 ----FKLSSSIDHYWLDAQTRFKMYAYDIERPILNPEEIMMDSVKFH-------QDLNRF 325 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 ++ V L I+ + + D ++ ++++++ + E + + L Sbjct: 326 KNLNFDVIDNPLPKITIDYKDGYKNIADYIN------QCPKKIIISAESLGRRETIHKML 379 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E + E + I+ D L+ + L+EG + + D Sbjct: 380 TECDL-------SLKRSESINILDP----VIDHLLIQSPLKEGF--SDEYFEVFTEYDLF 426 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 I + + I + +E HG+ Sbjct: 427 P------DFIH-----------QEKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGR 469 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 ++ + ++ + + T K P+ + +++ +H+L + Sbjct: 470 YQGLVQLDMLGSINEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEK 529 Query: 647 AQNLEFEEAAQIRDQLHQL 665 + ++ +L L Sbjct: 530 EKRKALKQVYDTAAELLNL 548 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/400 (11%), Positives = 120/400 (30%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ + + +Q ++ + Sbjct: 598 PMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNFVDRFSSFPV-- 655 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + + + L + +V +H + + + + Sbjct: 656 ----EIEEISRFKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGLIIVDEE--- 708 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 R + + + ++ATP L S + D + T + I Sbjct: 709 -----HRFGVRQKEMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLSI 763 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDID 481 + + + + + + ++E L + V H + Sbjct: 764 KTMVKSFSEGIIKEALTREFNRGGQAYFLHNDVSSIYAISEKLTKIMPDAKVAIAHGQMK 823 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++D F++L+ ++ G+D+P + + I +AD+ G + L Q GR Sbjct: 824 EKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQ----LHQLRGR 879 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + + +++ ++R + +Y E+ G G + D+ G Sbjct: 880 VGRSHHQ---AFAYLL-IDENRSLTSKAKKRLEAIQYLEDLG---SGYFLAMHDLEIRGA 932 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + E + M K L + + L+ Sbjct: 933 GEILGDQQSG-------EIHEIGFSMYLKMLNRAVTHLKN 965 >UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48294 Length = 657 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 61/378 (16%), Positives = 111/378 (29%), Gaps = 33/378 (8%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 FD + T V ++ Q LA L Sbjct: 137 DDGFDVIAQARTGTGKTL--SFVLPLVEKWQQFPQKSGRQPIILALAPTRELAKQISEYF 194 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + + G + + P + DY+ + L + HV Sbjct: 195 EAIGPHLS---TTCIYGGTSYWPQESAIRRGLDVVVGTPGRILDYIRKNTLDLSKLKHVV 251 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + ++ M A + E PQT+ SAT + + Sbjct: 252 LDEVDRMLDMGFAESVEEILGAA-----------YKTEEAPNNPQTLLFSATVPPWVYQT 300 Query: 404 SGGDVV------DQVVRPTGLLDPIIEV----RPVATQVDDLLSEIRQRAAINERVLVTT 453 + + D V R ++ + + I+ ++ R +V Sbjct: 301 AVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVISDVIKVYGGLDGRCMVFC 360 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR A +L + + + +H DI +R ++ R G+F LV ++ GLD+P Sbjct: 361 ETKRDANELAMS-SDVKQETQVMHGDIPQTQREVTLKGFREGKFQCLVTTDVAARGLDIP 419 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 EV LV + R S I GR R G + + + + + + Sbjct: 420 EVDLVIQCNPP-----RDVDSYIHRSGRTGRAGRNGVCVCFYKRQEERDLQKVEYKAGIK 474 Query: 573 EKQQKYNEEHGITPQGLN 590 K+ + I + Sbjct: 475 FKRVSAPQPSDIIKSSVK 492 >UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME Length = 1224 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 44/318 (13%), Positives = 90/318 (28%), Gaps = 20/318 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + +E+ + + +++ ++ S G L Sbjct: 575 QPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRP--VCVYGGTGISEQIAELKR 632 Query: 332 DGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++V I + G + R L E + + ++ + Sbjct: 633 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDR 692 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + G ++ + + + LL + Sbjct: 693 QTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLG 752 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++V + A+ L L + LH ID +R I D + G+ +L Sbjct: 753 IYQEAG-SIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLL 811 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+ ++ LV D + GR R G A + Sbjct: 812 IATSVAARGLDVKDLILVVNYDVPNH-----YEDYVHRCGRTGRAGKKGSAYTFITPEQS 866 Query: 560 SMAKAIGETERRREKQQK 577 A I Sbjct: 867 RYAGDIIRAMDLSGTLIP 884 >UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein n=22 Tax=Actinomycetales RepID=D2AV63_STRRD Length = 571 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 90/318 (28%), Gaps = 12/318 (3%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + AR L + +++ + L S + G Sbjct: 71 TLAFGLPMMARIAGSKARPGRPLAVVLVPTRELAMQVTDALEPLGRG--LSLRMKTVVGG 128 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLK 378 + L +VV I D + L E Sbjct: 129 MSMGRQIEALRRGVEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVSA 188 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDL 435 + Q + SAT + + D V + + E + DD Sbjct: 189 ILQQTPADSQRLLFSATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVHRDDK 248 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + A R ++ T+ + L + L + G + LH +R I+ + + G Sbjct: 249 FPVTAEIANREGRTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKEG 308 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 +VLV ++ G+ + +SLV +D + +S + GR AR G + Sbjct: 309 AINVLVCTDVAARGIHVDNISLVLHVDPP-----QDHKSYLHRGGRTARAGEKGTVMTLV 363 Query: 555 DKITPSMAKAIGETERRR 572 A+ + Sbjct: 364 LPNERRSTDAMTRRAGIK 381 >UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteobacteria RepID=Q1QAQ0_PSYCK Length = 384 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 42/355 (11%), Positives = 97/355 (27%), Gaps = 28/355 (7%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAME-EIKEELAARRKVLLENNKLLEEQRLTQ 288 F + + + + L + LT+ Sbjct: 48 QAQTGTGKTATFLLTIMEALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTK 107 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T + ++ P L D + + + + + + Sbjct: 108 YTSLHSVCIMGGTNYETQQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEAD 167 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + G P Q++ SAT + + + Sbjct: 168 RMLDMGFIPDIKRLV-GRMPP--------------NTDRQSLLFSATFNQDVMGLAYRWL 212 Query: 409 VDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLT 463 + +++ D L + + + E+V++ K + L Sbjct: 213 HEPEFVEIEPEHKTSELVDQHFYLLTEDQKLEAVERIITDSTVEKVIIFANRKDQVKRLY 272 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + G ++ L D+ +R + ++ + G VLV ++ G+ + +VS V Sbjct: 273 HKLRQ-GHKIVMLSGDVIQQKREKYLQRFKDGHASVLVATDVAGRGIHVDDVSHVINY-- 329 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R G +I + + A+ + + K ++ Sbjct: 330 ---TLPDQPDDYVHRIGRTGRAGQTGISISFVSEDDAFNIPALEKHLDTKFKLEQ 381 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 51/419 (12%), Positives = 107/419 (25%), Gaps = 32/419 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ +E + + ++ ++ ++ Sbjct: 21 YTKPTPVQNKVIPLVLEGKDVM-ATAQTGTGKTAAY--ALPLLHILNKKTQKSTTSKVVR 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + ++ + + G + P L Sbjct: 78 ALILVPTRELAS-QVGASVQAYGKNVPLSSAAIYGGVKFTPQAKKLDKGIDILIATPGRL 136 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +++ + + V + + + Sbjct: 137 LEHVKLGNVDLSRVEIVVFDEADRILDMG-----------------FWDEVQTLLGLFPK 179 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQR 442 QT+ S S + V G +E + + Sbjct: 180 KRQTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFM 239 Query: 443 A--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +VLV T TK+ A+++ EYL G + LH D +R + I + VL Sbjct: 240 IGTHNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ ++ V + GR R G+AI + Sbjct: 300 VATDIASRGLDIEDLPYVINYELP-----GDAEDYTHRAGRTGRAGKEGRAISLVAQEEK 354 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + K I + + K + Y K I A K + + Sbjct: 355 NKFKEIEKILKYTIKTEFYPGFETKEWVEKEAKKHTIQAKIDREKANKRPNGLRKKREE 413 >UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V8Y7_MONBE Length = 543 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 30/291 (10%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L L + + + + + ++ ++ V Sbjct: 226 PDILVATPMRLVHALQHKLVDLSAVRWLVVDEADRLFENGFEQQIDEV------------ 273 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEV-RPVAT 430 + SAT + + D V G + +E Sbjct: 274 ----IAACSHKKRRIALFSATMPERVETLAQTVLHDYVRIVVGAANAANQDVEQELKFVG 329 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + ++ IRQ + VL+ +K A+ L E L V +H+D +R E+ Sbjct: 330 SEEGKMTAIRQMLQTGLQPPVLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQQRDEV 389 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 ++ R G+ VL+ +L+ G+D V++V D F + I +GR R Sbjct: 390 VKRFREGQVWVLICTDLMGRGVDFKAVNVVINYD-----FPPNATEYIHRVGRTGRAGHR 444 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G+A+ + M + I + + E + ++ I Sbjct: 445 GRAVTFFTVDDRPMLRNIANVVKASGS--EVPEWMLKLKKTEKQRSRQIER 493 >UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Yarrowia lipolytica RepID=PRP5_YARLI Length = 974 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 55/447 (12%), Positives = 122/447 (27%), Gaps = 53/447 (11%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 ++G+ V ++ + ++ P R ++ + L + +T Sbjct: 412 VMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGV----ETHTTTLSGASSHPLGVIITP 467 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI- 347 + +++ +L + G P L ++V I + Sbjct: 468 TRELCVQIYRDLRPFLAALELTA--VCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLLA 525 Query: 348 ---GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 G + R + E + + LK + QT+ SAT + + Sbjct: 526 ANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVLKLTQSIRPDRQTVLFSATFPKKMEQLA 585 Query: 405 GGDVVD-------QVVRPTGL-------LDPIIEVRPVA-TQVDDLLSEIRQRAAINE-- 447 + + G + +EV ++ LL + + A Sbjct: 586 RRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQNEKSKFPRLLEVLGKYFAQGFFD 645 Query: 448 --------------------RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L+ + A+ L + L + G +H + +R + Sbjct: 646 EQSEGRVGTGESAATPIPNPKCLIFVERQESADSLLKELIQSGYPCLSIHGGKEQADRDQ 705 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 I D + G VL+ ++ GLD+ + LV D+ + +GR R Sbjct: 706 AISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSPNH-----MEDYVHRVGRTGRAGQ 760 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G A+ + +A I + + + + Sbjct: 761 KGTALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLMTERFEFKVRSGTEKRHMYGFSGK 820 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + R +A + Sbjct: 821 GLERLQDERDATREHERRAYEGDEAGE 847 >UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Oligohymenophorea RepID=Q240I5_TETTH Length = 749 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 51/362 (14%), Positives = 109/362 (30%), Gaps = 23/362 (6%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++ F I T+ + + ++ L L E Q LT Sbjct: 366 ISQTGTGKTCAFLIPLITYLRSLPPMDEEIAKDGPYALILIPTRELAPQIEKEFQNLTSN 425 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + ++ G G + + L + D L + L++ S V + + Sbjct: 426 MRM-KSLVMVGGKDEGNQAFKLKLGCELLIGTVGRIKDALEKNYLVLDQVSWVVLDEADK 484 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA------PQTIYVSATPGNYELEK 403 M + + + R ++ + + + T SAT Sbjct: 485 MIDLNFEQDVNFILDKIRTNMKSEDENMAVLQEQEAKVGEKIFRVTHLFSATMPPNLERL 544 Query: 404 SGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + G ++ I++ + L + +++ K Sbjct: 545 AKKYLRSFCYISIGEAGDAKKDIEQIVDFMSEGQKKSRLQKIL---ETAKPPIIIFANEK 601 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E L++ L+ G + H +R + + G++D+LV +L GL + V Sbjct: 602 TAVEKLSKILDRWGWQNVIYHGGKTQQQREAAVDGFKKGKYDILVATDLGARGLHVDGVK 661 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQ 575 +V DA ++ + I GR R G A + ++ + E + Sbjct: 662 MVINFDAP-----KNIKDFIHRTGRTGRAGKRGIAYTFVTNHNEAIMYDLREFLFKNNFD 716 Query: 576 QK 577 Sbjct: 717 IP 718 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 95/642 (14%), Positives = 194/642 (30%), Gaps = 86/642 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS +A I + +V+AP A L E+ F Sbjct: 25 LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSE------------TGLSI 72 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMM 158 +P + +S + + R +L+ V+V + S++ P + K Sbjct: 73 ELLPDLEILPYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L+VG + + I +L Y R + G F +RG +ID+F +R++ D Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLY-TNPIRIDFDD 191 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E+++ + LFD + ++TI TI P HY ++ + Sbjct: 192 EKIDLIKLFDVDSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEW---- 247 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVV 337 + G+ NY E +++DY L V Sbjct: 248 -------------PLYNFIETYAESHGVYNYLPLF-----FESMSSIWDYCKPGTELFCV 289 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD---NRPLKFEEFEALAPQTIYVSA 394 + I + ++ L + + + K E + Q Sbjct: 290 GDIKTPIKDYQKLINQRFNSQDNLSQPNLKPSELFFSATEQINKINEMHPINLQHQKCW- 348 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + T L+P+ + +D ++ + + + ++L++ Sbjct: 349 ----------KSHDHNSINFDTRPLEPL--TAFKTSSMDKIIHGLLETSTN--KILLSAG 394 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 +K + L E R R+ + V V + E + Sbjct: 395 SKNRIAFIENQLREFSIASR----------RVSNWNEFLERRAGVFVTEKSISESFITAK 444 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + I + + G S R R+ GK I + + + Sbjct: 445 SGIAVIGEIELFGRRSSTRKY--------RSPAGK----------DPESIIQDLKDLQVG 486 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + EHGI ++ + + A G P+ D V + + + Sbjct: 487 SLVVHGEHGIGKYKGLSVMMVDNVNSEFLTIEYALGDLLHVPVTLMDQVSRFIGQSSDES 546 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELFIAAS 673 + L + ++A + +L ++ R + + S Sbjct: 547 ILSHLGSNQWKKLCKKTKKQAYDVAAELLEIYANRAIAVGKS 588 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 118/406 (29%), Gaps = 37/406 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 V + ++ + Q + E + Sbjct: 621 DMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERFS 680 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 E I + + + + + ++ +H D+ Sbjct: 681 EWPIAINILSRLQT------SKNNNQVRAGIEKGKADIIIGTHA--------LLSDKVVY 726 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + L R + + + ++ATP L + G++ D + T Sbjct: 727 KNLGLVIVDEEHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPP 786 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL- 476 I ++ L+ ++ + +VL E++ E + + V L Sbjct: 787 EGRIPVKTYISQWDKSLIHEACQREISRGGQVLFVHNRIDDIENMAETIRQI-IPVGSLE 845 Query: 477 --HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 H + ++ EFD+L+ +++ GLD+P + + I AD+ G + Sbjct: 846 IAHGRMKERSLERVMMKFYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQ---- 901 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 L Q GR R+ Y + PS + R+R + + E+ G+ G Sbjct: 902 LHQLRGRVGRSERQ---SYAYLMIPSK-HTLTNEGRQRLEAIEAIEDLGV---GFILATH 954 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 D+ G + + + + L Q I L Sbjct: 955 DLEIRGAGEILGDEQSG-------QIQKIGFSLYKDMLAQAIDSLR 993 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 64/427 (14%), Positives = 119/427 (27%), Gaps = 63/427 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL+ L L + + + Q ++ P D Sbjct: 13 EEILKALKNLGFEKPSEVQQ-----------EVIPYILDK---------------KDLVV 46 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I ++ + ELA + K + N L++ R Sbjct: 47 KSQTGSGKTASFGIPLCELVNVEENKVKALILVPTRELAIQVKEDISNIGRLKKVRCAAI 106 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + P + D++ L + D V I + Sbjct: 107 F---------GKQPFNEQIRELKQRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADK 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + + T SAT + Sbjct: 158 MLNMGFIDQI-----------------TDVLDKLPQSKNTALFSATIPKEIEGLYSNYMN 200 Query: 410 DQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMAEDLTE 464 + V D I E + + ++ A +E ++ TK +L+ Sbjct: 201 NPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAFTDESAIIFCNTKDSVRNLSS 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L++ V+ LH D+D +R+ + + + EF VLV ++ G+ + ++ V + Sbjct: 261 LLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAARGIHINHITNVFNYEVP 320 Query: 525 KEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 E + S + IGR+ R G AI K I E ++ E Sbjct: 321 IE-----KESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEYINYSIEEANLLEYEE 375 Query: 584 ITPQGLN 590 I Sbjct: 376 IIEGRKR 382 >UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IJ90_PLAF7 Length = 917 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 47/363 (12%), Positives = 108/363 (29%), Gaps = 29/363 (7%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQA---MEEIKEELAARRKVLLENNKLLEEQRLT 287 + F ++ E + L E ++ + + Sbjct: 570 SQTGSGKTFSFLCPIISNLKKENEILRPHFPGSYACISPLCLILCPTRELVIQIQNEVNS 629 Query: 288 QRTQFDLEMMNELGYCSGIEN--YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + M+ G + + G L D L + + + ++ Sbjct: 630 LTKNMSIVCMSFYGGETMKDQVAQINEKQGDIIICTAGRLLDLLNSCKVSLSFIKYLIFD 689 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M ++ + + L QTI+ +AT + E Sbjct: 690 EADEMISLGLKKQMDEIIFQKDLSPKDT-------------RQTIFFTATFSDKLKEHIE 736 Query: 406 GDVVDQ-----VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + + + I E+ + ++ + + ++ + Sbjct: 737 KYMSTPYVYLNIKQKRETKNRIREIVKYVPAKSKFIELLKDIKILKGQAIIFVELRHSIN 796 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ +L+ G V YLH + + R + + R +L+ ++ GLD P++ LV Sbjct: 797 NVFNFLKTKGYNVDYLHGKMSQIRRQSVFENFRKKSVQILIATSIAARGLDFPDLELVIN 856 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D E + IGR R G AI Y + ++ + + R+ ++ Sbjct: 857 YDLPSE-----FEQYMHRIGRTGRIGKGGMAINYFNSSNKNIIDKLIDHLRKYDQPVPNW 911 Query: 580 EEH 582 H Sbjct: 912 LLH 914 >UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 Tax=Eumetazoa RepID=DDX46_DANRE Length = 1018 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 54/401 (13%), Positives = 113/401 (28%), Gaps = 26/401 (6%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + +T + L++ E S + + + G L ++ Sbjct: 410 EAEGPLAVIMTPTRELALQITKECKKFSK--SLALRVVCVYGGTGISEQIAELKRGAEII 467 Query: 337 VDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 V I +G + R + E + + ++ + QT+ Sbjct: 468 VCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMF 527 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + V G ++ + V + LL + Sbjct: 528 SATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEK 587 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 V++ + A+ L + L + LH ID +R II D + G +LV ++ Sbjct: 588 G-SVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSV 646 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 GLD+ ++ LV + GR R G A + + + Sbjct: 647 AARGLDVKQLILVVNYSCPNH-----YEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGD 701 Query: 565 IGETERRREKQQK-YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + E+ + K I+ + G N Sbjct: 702 ILKALELSGSSVPAELEQLWTNFKEQQKAEGKIIKSSSGFSGK---GFKFDETEHALANE 758 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + +H+ + + + E + ++ Sbjct: 759 RKKL--QKWALGLHDSDDEDTALDIDEQIESMFNSKKRVKD 797 >UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPU2_DESBD Length = 741 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 106/363 (29%), Gaps = 17/363 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +E + + T+ + G E + LS G Sbjct: 76 AFLLPILDRIETGLGAPQALVLVPTRELAVQVTRDAEELGREAGIKPLSIYGGVGYKG-Q 134 Query: 326 FDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L L++ + + G DR + E L + + + Sbjct: 135 IQGLEDGAQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLP 194 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLS 437 Q+ SAT + + + D V + ++ P + L+ Sbjct: 195 RGLQSAMFSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVK 254 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I ++ TK ++ L G V + +D+ R E++ LRL + Sbjct: 255 II--EQENPASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKL 312 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 LV ++ G+D+ E+S V + + + GR R G AI + Sbjct: 313 KFLVATDVAARGIDIHELSHVFQYQPP-----QDHEAYVHRTGRTGRAGAAGVAISFVSG 367 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + I + +Q + + + V + A + + + + Sbjct: 368 MEEIELEQIAKKFSIPMVEQPLPADEELETLISQRAVFLLEARLRKADNIQKERMQRFMR 427 Query: 617 IVE 619 V Sbjct: 428 TVG 430 >UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorhabditis RepID=GLH2_CAEEL Length = 974 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 95/363 (26%), Gaps = 49/363 (13%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + R ++L + L +Q + + Sbjct: 597 QTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYP-----RCIILTPTRELTDQIYNEGRK 651 Query: 292 FDLEMMNE-----LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 F + M E G G + + + + + + Sbjct: 652 FAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDE 711 Query: 347 IGGMYR-GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 M + + QT+ SAT + E + Sbjct: 712 ADRMIDAMGFGTDIDTI-------------VNYESMPKKENRQTLMFSATFPDSVQEAAR 758 Query: 406 GDVVD-QVVRPTGLLD-------PIIEVRPVATQVDDLLSEI----------RQRAAINE 447 + + ++ + E + + D LL + + + Sbjct: 759 NHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTK 818 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + +V + MA+ L L +H + ER E +R R G VL+ + Sbjct: 819 KTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAE 878 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 GLD+ V V D + I IGR R G+A + ++ + Sbjct: 879 RGLDIKGVDHVINYDMP-----DNIDDYIHRIGRTGRVGNAGRATSFIS-EDCNLLSELV 932 Query: 567 ETE 569 Sbjct: 933 RVL 935 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 96/640 (15%), Positives = 224/640 (35%), Gaps = 76/640 (11%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 E + + G + + I N + +V++ +K A +L+ + +F E Sbjct: 13 KFEKKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGE--- 69 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P D + S + + Q + + ++ +++ + AIY Sbjct: 70 ------------TYIYPEIDILK-RHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIY 116 Query: 147 GLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 +P + + +I + R+L + Y R + G F RG ++DIF Sbjct: 117 RTVKNPSDFKNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSP 176 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ +R++ FD+E++ + +FD +T + + I IYP + + E +E + Sbjct: 177 LSEK-PIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLA 235 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +L ++ EN + ++ + +E+ G S +E++S + ++ Sbjct: 236 KLDDKKIQKDENYQ-----EISTYLKEKVEIYRATGDFSDLESFSNLIYENTY-----SI 285 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 DYL D ++ D H + +I G+ +L E + FE+ + L Sbjct: 286 ADYLNDDTIVFYDNYHKILEKIEGL---REYFLTSLQEMNRSYIYQDVIDNIAFEKIQNL 342 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + Y+S + D + I + + L EIR++ Sbjct: 343 DIRKYYLSTLK-----------LND--KIIEKNYNLDIIDLAYYSSEEYLAKEIREKITD 389 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N +V+++ T++ + + + L ++ +I ++ G+ + + Sbjct: 390 NYKVIISLNTQKQKDYVEKVLFDNYFY-------------DDIYYGVKEGKIFIDLNKYH 436 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 L +GL+ + + + + ++ + + + K Y + + Sbjct: 437 L-KGLEDRKNKIFLLTPRELFTEEERKKRRV----KFKYTNSEKIRNYQELNIGDYIVHV 491 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E + G+ K + I+ G +I + + Sbjct: 492 SHGIGLYEGI------ENVEVGGVFKDFLKIVYDGGDIIYVDINNMNYIQKYTASTDN-- 543 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +++L Q ++ +E I + L +L Sbjct: 544 ------RKPALNKLGTKNWQKTKSRVRKEIEDISEDLIKL 577 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 124/439 (28%), Gaps = 32/439 (7%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q + Sbjct: 619 KRDMEKERPMDRLLCGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVNR 678 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 +S + + L + ++ +H + Sbjct: 679 FANFPIN------IEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLL 732 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + + +SATP L S + D V T Sbjct: 733 IIDEEQRFGVK--------HKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIET 784 Query: 417 GLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 + I+ A + + +V ++ L+ + Sbjct: 785 PPRERQPIQTFVTAQNKMVIKEAVMNEVNRGGQVFYVYNRVETIDEKYLELKRLLPDINI 844 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + E I+ D+ ++D+L+ ++ G+D+ V+ + + DAD+ G + Sbjct: 845 AYAHGRMSQRELENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQ--- 901 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ Y + K++ E +R K G G + Sbjct: 902 -LYQLRGRVGRSSRE---AYAYLM-YEPFKSLTENSEKRLSAIKNFTSLG---SGFKIAM 953 Query: 594 VDILALGQ-NIAKTKAKGRGK---SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 D+ G ++ + G + + L+ + + + + +N Sbjct: 954 QDLSIRGAGDVLGGRQHGFIDSVGYTLYSQMLEQEIQAKKGILEPLLEQDRTQDVSYYEN 1013 Query: 650 LEFEEAAQIRDQLHQLREL 668 + E A I+ + ++ Sbjct: 1014 IIKEAAPSIKKDIFEVETD 1032 >UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 n=1 Tax=Hydra magnipapillata RepID=UPI0001926D68 Length = 552 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 68/428 (15%), Positives = 134/428 (31%), Gaps = 40/428 (9%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 L A ++ + + + + G S + + Sbjct: 71 TTPNNNILEAMCMLVKSWDAVYSVSESLAKFSNIQLGLATGGLDSRSQEAILRKNPDVVI 130 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D+L + L E L ++ + Sbjct: 131 ATPGRLIDHLHNTP----------------SFNLQTIEILVLDEADRMLEEHFHDQMKEI 174 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV--------RPTGLLDPIIEVRPVATQ 431 QT+ SAT + + + V + L + +R Sbjct: 175 IRLCPRGRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEFVRIRSTREA 234 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + + N++ LV TK +A L G + LH ++ ++R+E + Sbjct: 235 DRLAVVVALCCRSFNQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNLTQLQRLEALEK 294 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + E D+LV +L GLD+ V V + +S I +GR AR G++ Sbjct: 295 FKNNEVDILVATDLAARGLDIVGVKTVI-----SFNMPTTIKSYIHRVGRTARAGKAGRS 349 Query: 551 ILYGDKITPSMAKAIGETERR----REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 I + M K + + + R + E++ + K + +IL ++ + Sbjct: 350 ITLVGEKERKMLKEVVKNAKIPVKNRILSTEVVEKYKNKLESFEKDIKEILKEEESAKQL 409 Query: 607 KA------KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + K + E + P K +Q + + + +NL EE R+ Sbjct: 410 RVAEMEMNKAKNLIEHHDEIMSRPAKTFIKTQKQSSAKNKKESQKKVKNLTEEEKKIRRE 469 Query: 661 QLHQLREL 668 Q+ R++ Sbjct: 470 QMFHARQI 477 >UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DPF6_ZYGRO Length = 557 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 57/382 (14%), Positives = 118/382 (30%), Gaps = 37/382 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE--EQRLTQRTQ 291 S + P + ++++ LA E + +E + L Sbjct: 203 TGSGKTLAFLIPILMKIDQLPSRPLVLKKMDGPLALILAPTRELAQQIEKEAEELIDAWG 262 Query: 292 FDLEMMNELGYCSGIE-NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + E+ + +G S E + P L D L L + + + + M Sbjct: 263 KNCEVASIVGGHSIEEISLQVSQGTDILVATPGRLIDCLENHVLTLGKVETLVLDEADRM 322 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + QT+ +A+ + + G + + Sbjct: 323 IDMGFE-----------------EQVTSILGNLTQKRQTMMFTASMTPGTEKIAAGYLKN 365 Query: 411 QVVRPT----GLLDPIIEVRPVATQVDDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEY 465 V G I ++ + I + +++ KR A+ L + Sbjct: 366 PVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYRAPIIIFINYKRAADWLVQK 425 Query: 466 L-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E +V L+ +R + ++ LR G+ +++ N+ GLD+P+VSLV Sbjct: 426 FYKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAARGLDVPDVSLVIN---- 481 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 ++ + IGR R + G AI + D P + K + + + Sbjct: 482 -FQLSKTFEDYVHRIGRTGRAGHEGTAITFLDDEDPELVKELYKYLQENN-----PTGAN 535 Query: 584 ITPQGLNKKVVDILALGQNIAK 605 L +K + + Sbjct: 536 NFAPRLKEKYRLGKRRIEEVLY 557 >UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XZX1_BRAFL Length = 655 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 60/402 (14%), Positives = 121/402 (30%), Gaps = 38/402 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ FD + +D +T T ++ + + Sbjct: 114 FPVQYSTFDFVYDG---WDVITQARTGTGKTLAFSIPLVERLQKDGVSIKRGRAPVVIVL 170 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + ++ + G +N + P + D++ Sbjct: 171 APTRELAIQVYEDFKSISTKLTSF---CVYGGTPYPPQNDAINRGLDILVGTPGRIQDHV 227 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + L + + HV + ++ M + + ++ ++ PQT Sbjct: 228 RSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAA-----------YKKDDKSQNPQT 276 Query: 390 IYVSATPGNYELEKSGGDVV------DQVVRPTGLLDPIIEV----RPVATQVDDLLSEI 439 ++ SAT N+ E + + D + +E + + I Sbjct: 277 LFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIADII 336 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEY--LEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + R +V TK+ A L L++ + LH DI +R ++ R G Sbjct: 337 TMYSGQHGRAMVFCETKKEANQLVLEGVLKQE---AQVLHGDIPQAQRELTLKSFRDGNI 393 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+PEV LV + S I GR R G + + Sbjct: 394 QVLVATDVAARGLDIPEVDLVVQCEPP-----SDVDSYIHRSGRTGRAGRTGVCVCFYKP 448 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + +Q + I N I Sbjct: 449 NREQDLRFVERRAGIKFRQINAPQPDDIVKAAANDSARAIEE 490 >UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9SPHI Length = 399 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 107/298 (35%), Gaps = 17/298 (5%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + L+N +T + L++ E S + G T Sbjct: 110 LIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHS--ATFIGGTNINTDM 167 Query: 327 DYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L ++V + + + ++ + L E+ L N K Sbjct: 168 KVLSRKLHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQ 227 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + V ++ I P +L++ Sbjct: 228 REQTMLFSATLEPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLAD 287 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + Q A++ +V+V T TKR+A+ L++ L + G + +H + R + I + GE Sbjct: 288 LFQNRAMD-KVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETR 346 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VLV ++ G+D+ +VS V + S I IGR R G AI + + Sbjct: 347 VLVATDVAARGIDVADVSHVINYQLPM-----TMDSYIHRIGRTGRAGKTGHAITFVN 399 >UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=C7YLS4_NECH7 Length = 621 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 47/323 (14%), Positives = 88/323 (27%), Gaps = 28/323 (8%) Query: 266 ELAARRKVLLENNKLLEEQ-RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L E + + R + G + P Sbjct: 211 PLVLIIVPTRELAIQIFNEARKFCYRTMLRPGVVYGGVPIREQIGLLGKGCDVLVGTPGR 270 Query: 325 LFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ L + ++ I + + D + G Sbjct: 271 LVDFIQRPKYLTLRRLRYMVIDEADELLDLDWNEDIDKILSGGEQDEG------------ 318 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL-------LDPIIEVRPVATQVDDL 435 + SAT + + + V G + I+ + D L Sbjct: 319 --NVKFSLFSATFPKSARDLAKNYLAASHVRFRVGRAGSTTANIKQIVLPAEPHEKRDIL 376 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + R ++ +++ A++L ++L V +HSD ER +R R G Sbjct: 377 LGLL--EEMHGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQEREAAMRSFRSG 434 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +L+ + G+D+ V V D IGR R G A + Sbjct: 435 NAPILIATGVSARGIDVRNVVHVINYDLPSMDHGG-IEEYTHRIGRTGRIGHRGIATSFF 493 Query: 555 DKITPSMAKAIGETERRREKQQK 577 + M + T ++ Sbjct: 494 TERDEGMGSVLTRTLLETNQEIP 516 >UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHU9_9BACT Length = 412 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 50/379 (13%), Positives = 117/379 (30%), Gaps = 30/379 (7%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + F+ T + + + R L + Sbjct: 35 IQEGKDLLAESQTGTGKTLAFSFPLIERINTLPPKKKKISILGLVLVPTRELALQV--EK 92 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + G + + P + + + + +V+ Sbjct: 93 AFTNYAEFSLRPIKTATLIGGENIDGQIRKLRMGLDVLIATPGRIIELINLGEVRLVELE 152 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + M A + + E Q + SAT Sbjct: 153 MLILDEADKMLDLGFADELKEL-----------------LEALPKKRQNLLFSATLPQKV 195 Query: 401 LEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 + + + V IE R + + +++ + ++ + Sbjct: 196 QQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQVLQKLFKDEQWKHTIIFVSS 255 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A +L L++ G + + H D+ ER+++++ + +F +L+ ++ G+D+ ++ Sbjct: 256 KRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDFPILIATDIAARGIDISKL 315 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 S V D RS + IGR R G AI + + T K I + + + Sbjct: 316 SHVINYDLP-----RSPMDYVHRIGRTGRAGQKGVAISFINPATEDHFKTIQKQAGIKLE 370 Query: 575 QQKYNEEHGITPQGLNKKV 593 +++ ITP + + Sbjct: 371 KERIEGFDQITPVEVKQAK 389 >UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0EQ53_ENTDI Length = 585 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 94/345 (27%), Gaps = 26/345 (7%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + I + + + L L E +L Sbjct: 222 TGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYALILAPTRELALQIQQETLKLATPFG- 280 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + P L D L L++ V + + M Sbjct: 281 LRVCCCIGGESIQPQIEELSNGAEIVVAAPGRLKDLLSQSYLVLGQCYFVVLDEADKMID 340 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-------PQTIYVSATPGNYELEKSG 405 + + LPS D + E T SAT + + + Sbjct: 341 LGLDVQVRYI--FSELPSVKDGSTEEIISMEKENASGNPSTRTTFMYSATMPSTLEKITT 398 Query: 406 GDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + G + + + L+ I+ + +V ++ Sbjct: 399 EYLRRPITISIGKTGNVAENVKQNVVWVEDNMKKRKLVQVIKSSSPP---TIVFVNQQKT 455 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 E++ LE+ +H +ER + + + ++ V+V N+L G+D+ V+ V Sbjct: 456 VEEICLLLEKEKINCVGIHGGKRQIERTDALEGFKRKKYPVMVATNVLSRGIDIESVANV 515 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 + + +GR R G AI + ++ Sbjct: 516 INYEMP-----QKIEEYTHRVGRTGRAGKGGNAITFINENDGKEV 555 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 56/382 (14%), Positives = 116/382 (30%), Gaps = 29/382 (7%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT-L 325 A L N+ L + + T+ + G + + L+ G+ P Sbjct: 55 FAIPILQQLIWNEKLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLA--IYGKFPFRFQ 112 Query: 326 FDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++ + + + R + E L + ++ Sbjct: 113 KQDLQQRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLP 172 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ 441 T SAT ++ + + D + IE D + + Sbjct: 173 KKRTTALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLH 232 Query: 442 RAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 E ++ T+ E++ + L+ H RV LH + ER+ ++ R GE + Sbjct: 233 LLGKETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRI 292 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ ++S V +D F + + I +GR AR +GKAI + Sbjct: 293 LVASDVAARGIDIADISHVINVD-----FPDKKETYIHRLGRTARKDTSGKAISFVTARD 347 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + + ++L +++ K Sbjct: 348 QEKLMQLEDYLGYSLS--------------MRDASTELLTQDYDLSYLSQSSERKEDKGA 393 Query: 619 EPDNVPMDMSPKALQQKIHELE 640 + + A + K Sbjct: 394 ALRKDVLRIYIGAGKAKKLRAG 415 >UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryota RepID=Q9SEV8_GUITH Length = 385 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 64/435 (14%), Positives = 139/435 (31%), Gaps = 68/435 (15%) Query: 154 YLKMMLHLTVGMIIDQRAILRRLAE----LQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 + ++ + R L + + R QRG I P + + Sbjct: 1 MNHNIKVFKRAETFEEMELKRELLKGIYGYGFERPSFIQQRG----------ILPIINKE 50 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + + F I + +I + ELA Sbjct: 51 DVV----------------AQSQSGTGKTATFVIGTLQNLSNIENKIKNLVLVPTRELAT 94 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 ++ + + + G I N ++ + P + D L Sbjct: 95 ---------QVEQVFKSIGFFMKIKTQLLTGGDRIQITNKEQYKKPQIVIGTPGKVLDSL 145 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + ++ + + M+ + LK ++ L + Sbjct: 146 SKKTYYIENLEYLVVDEADEMF-----------------SRGFKIQVLKIIKYLPLEAKI 188 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQVDDLLSEIRQRAAI 445 SAT LE + + V + +E + + L + + + Sbjct: 189 ALFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIEIYSK 248 Query: 446 NE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + ++ T+R E L ++++G V YLH ++ ++R +++D R G F +L+ Sbjct: 249 IKITQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRILIST 308 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 +L+ G+D+ +V LV D + + I IGR+ R G AI + + S+ Sbjct: 309 DLVSRGIDIQQVCLVINYDLP-----KLKEVYIHRIGRSGRFGRKGVAINFLSRSDVSIL 363 Query: 563 KAIGETERRREKQQK 577 ++I ++ Sbjct: 364 RSIEGYYNTNIEEMP 378 >UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y2B2_BRAFL Length = 672 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 65/422 (15%), Positives = 128/422 (30%), Gaps = 37/422 (8%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE--EQRLTQRTQ 291 T + T I LA E +E ++L + Sbjct: 268 SGKTAAFLLPVVLNVFRTVSSAIGGRDPRWTHPLALILAPTRELCMQVEDQAKQLMKGLP 327 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + + P L D L + + + + ++ M Sbjct: 328 HMRTALLVGGLPLPPQVHRLQQGVQVLVATPGRLLDILHRKDVSLECVEVLVVDELDTML 387 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + L+ + QT+ SAT + + + Sbjct: 388 HLG-----------------FREQVLEIIDSLPSQRQTMMFSATIPQPIETLASSILNNP 430 Query: 412 VVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V G + I ++ L + ++ VLV ++ A+ L + Sbjct: 431 VYVLVGQASTPSPSVKQTILWVEENSKKRMLFTILQDPKHYQPPVLVFVDSRMGADLLAD 490 Query: 465 YL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + ++ R +H D ER + L GE DV+V +L GLD+ V LV + D Sbjct: 491 AIHKKCNVRALSMHGDKPQSERSAALNSLLKGEVDVVVATGVLGRGLDLCRVRLVIVFDM 550 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK---YN 579 S I IGRA R +G+A+ + + + + +T Q N Sbjct: 551 P-----PSVNEYIHQIGRAGRLGSSGRAMAFINNNNKGLFLDLFDTLHPLHMQMPSQLVN 605 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRG-KSRPIVEPDNVPMDMSPKALQQKIHE 638 H + K+ + ++T+ G + + + + +Q+ + Sbjct: 606 SPHLQQQRERRKRTQRARENVETSSRTEQHGEKWAQQKHSNAAYMQRQRAKRGREQEGSK 665 Query: 639 LE 640 + Sbjct: 666 AK 667 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 52/352 (14%), Positives = 101/352 (28%), Gaps = 17/352 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L +++ LT + +++ ++L + + R + G Sbjct: 58 LPLLERIIQAKGSAPCGLILTPTRELAIQVQSDLVALAKYTS-VRQILALYGGASIEEQI 116 Query: 327 DYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L ++V I + + L E L + + Sbjct: 117 RQLAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 + SAT E + + D G + + P + L Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRV 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + I ++ T+ +++ E+L G LH D+ +R ++ R+ Sbjct: 237 VDYYPNIYG--IIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQ 294 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ +V+ V G S GR AR G +I Sbjct: 295 LLVATDVAARGLDVDDVTHVLHY-----GLPADPDSYTHRSGRTARAGKTGLSIAICHLR 349 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + I + R + I + L I N T+ Sbjct: 350 DSKQIRIIEQHAGIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYD 401 >UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Candida glabrata RepID=PRP28_CANGA Length = 582 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 104/348 (29%), Gaps = 30/348 (8%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF- 292 T+ P + + L L E RL + Sbjct: 224 SGKTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRLLSAWENK 283 Query: 293 --DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G+ +++ P L D L +++ + + + M Sbjct: 284 KNLNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHLVVLNKIQSLVLDEADRM 343 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + A QT+ +AT + + G + + Sbjct: 344 IDLGFEDQMKSILSHLMADE-------------LAARQTMLFTATLSSSVESIAKGYLKN 390 Query: 411 QVVRPTGLL----DPIIEVRPVA-TQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTE 464 + G P+I D LS ++ ++ K A+ LT Sbjct: 391 PLHVSVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIKNGLPAIIFINYKETADWLTL 450 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + + LH +R I+ L+ G +VL+ N+ GLD+P+V+LV Sbjct: 451 RLSDR-FNIVTLHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLDIPDVALVVN---- 505 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGD-KITPSMAKAIGETER 570 + I IGR R G A+ Y + P + K + + + Sbjct: 506 -FQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQLIKQLAKYVK 552 >UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N876_PHYIN Length = 681 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 113/398 (28%), Gaps = 29/398 (7%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ FD+ V+ L G+ + + + + + + Sbjct: 130 FPIQAMTFDKIVDGKDLM----GRARTGMGKTLAFALPVIELLLQDKRPRARGRAPRVVC 185 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 ++ E LT + + G +N + + D++ Sbjct: 186 MAPTRELAKQVATEFELTGPS--LSTVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHI 243 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + + + + + M V + + QT Sbjct: 244 DRGNLRLHNCEFLILDEADTMLEMGFREDVQKV----------FTAMDQVKNESTGKRQT 293 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRP---------TGLLDPIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + + I + L + + Sbjct: 294 LLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLG 353 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A + R ++ TK+ +L + E + LH DI +R ++ R G +L Sbjct: 354 VYAKKDSRTIIFAETKKDCNELAVH-PEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLL 412 Query: 501 VGINLLREGLDMPEVSLVAILDADK-EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 + ++ GLDM V LV + + + + + GR R G I Sbjct: 413 IATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQ 471 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I + + ++ + K + +I Sbjct: 472 RDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEI 509 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 102/675 (15%), Positives = 195/675 (28%), Gaps = 94/675 (13%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 +L+ L + + +++ + +++ A L E+++ Sbjct: 54 KLQGVLASVGEPRLHISAIDEARSWVARAIAEKS--VVVIVTATSREAQDLTAELRDMMG 111 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 + A P+ +T + S RL + + D+ Sbjct: 112 DA--------------VAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPI 157 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +VVA + L + + L D I RLAE+ Y D +RG F V Sbjct: 158 RIVVAPARSFIQPIMKGLGEREPIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAV 215 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG V+DIFP+ + ++ +R EL+ +E+ L F + + Sbjct: 216 RGGVVDIFPS-TAELPVRAELWGDEISDLRAFSVGDQRTIEN----------------FD 258 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 EL V K+ L ++E G+E+ L Sbjct: 259 PGAVPVYPCRELRIDDAVRARAEKMARTHASNATLADALTKISEGVAVEGMESLIPVLFD 318 Query: 316 RGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P + P+ ++V + + + + E + + Sbjct: 319 GPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESPID 378 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGG-------------DVVDQVVRPTGLLD- 420 E + + SA +EK+ + T LD Sbjct: 379 TAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLELDF 438 Query: 421 -PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + + V+ +SE+ A R++ T LT A+ ++ E G V D Sbjct: 439 STGPQPKGKPGDVEKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTP---D 495 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS----LVAILDADKEGFLRSERSL 535 D G+ V+ +L GL +P V L+ + + D G Sbjct: 496 ADPQ------NPSAPGKATVIRA--VLHGGLVIPHVDDARPLLVVAETDFTGN------- 540 Query: 536 IQTI-----GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 I GR + + R K Q+ G Sbjct: 541 --RIVAYGDGRRRPWRKRNRVDPLSLNPGDLVVHETHGIGRFVKMQERTV--GKGADATR 596 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + + + A P+ D + + + + ++ G ++ + Sbjct: 597 REYMVLEYA-PSKRGGAADH--LYVPMDSLDLLSRYVGGE--NPSLSKMGGSDWKNTKKK 651 Query: 651 EFEEAAQIRDQLHQL 665 I L QL Sbjct: 652 ARAAVRDIAADLVQL 666 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 121/421 (28%), Gaps = 39/421 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q E M Sbjct: 716 PMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHFATFSERME------ 769 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G R LS + + L + +V +H + + Sbjct: 770 GFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLVIVDEE--- 826 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + +SATP LE S + D T D Sbjct: 827 -----QRFGVEHKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHPV 881 Query: 425 VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V Q D + + IR+ + +V R E + +++ E R + H ++ Sbjct: 882 LTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQMN 941 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + E+DVLV ++ GLD+ + + + +A G + L Q GR Sbjct: 942 EDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQ----LHQLRGR 997 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + ++ + ET R N + G G+ + D+ G Sbjct: 998 VGRSRERGYAYFLYP----PSQTLTETSYDRLSTIAQNNDLG---AGMAVAMKDLEMRGA 1050 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE----GLMMQHAQNLEFEEAAQ 657 + V D+ + + + + + G + + E Sbjct: 1051 GNVLGAEQSG-------HIAGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKENKETRID 1103 Query: 658 I 658 I Sbjct: 1104 I 1104 >UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1 Tax=Desulfotalea psychrophila RepID=Q6APU7_DESPS Length = 498 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 97/330 (29%), Gaps = 30/330 (9%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + L L + + ++L + T + + + + Sbjct: 166 KRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELLKRGKTDIVVA 225 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+ + + + I + M + Sbjct: 226 TPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVS---------------W 270 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVD 433 + QT+ SAT + S VD V T ++ + + + + Sbjct: 271 MPKKRDRQTLMFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYN 330 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + I++ +ER+++ K L + L+ + L D+ +R + R Sbjct: 331 VLYNLIKE--NSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFR 388 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 G+ VLV ++ G+ + +S V + IGR R GK++ Sbjct: 389 TGKVKVLVATDVAGRGIHIDGISYVVNY-----TLPYEPEDYVHRIGRTGRAGLAGKSVS 443 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + I E + EE Sbjct: 444 FACEEGSFYLPDIEEYIGAKLDCVLPPEEL 473 >UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM67_9FIRM Length = 424 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 116/395 (29%), Gaps = 23/395 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + I+ + E L R V ++L + + Sbjct: 28 IQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQRVDVKKGGTQVLIMTPTRELAKQIF 87 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 +++ + ++ G L + +++ + I Sbjct: 88 DVLRPFAILMEAD-----VADIIGGRTIENQIQKLKREPHIIIGTPGRLLDHIRRRSLDL 142 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + L E L + + Q + SAT + + + VV Sbjct: 143 SGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQVLLFSATMPPEAKKLAHKYMKSAVV 202 Query: 414 RPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 ++ + + L+ +++ +V T+ A +L L+ Sbjct: 203 ADVAEKAVASTVEQRVYETVKTHKFSLLVRHLKEI--NPYMAVVFCNTREGAHELAGRLQ 260 Query: 468 EH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E V +H ++ +R ++IR+ VLV ++ GLD+ ++ V D Sbjct: 261 EETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLDVEGITHVFNYDIP-- 318 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 R+ I IGR R G +I Y + + + + + KY+E+ I Sbjct: 319 ---RNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRKLEKAIKEIIT--KYDEKGNIR 373 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 ++ G K + + + Sbjct: 374 RIKGPSAKKKVILPGMYKPTKKKEHKVLGHKGSDM 408 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 96/651 (14%), Positives = 194/651 (29%), Gaps = 112/651 (17%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + L E LE + G++ S K+ + L + A ++ Sbjct: 20 SKTRIFFALTEALEKKE-PLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQ 75 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + K F P+ D K + +I + R + ++E + Sbjct: 76 DGKIFAEN---------------CLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEE 120 Query: 136 VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V ++ A+ + + + + + + +G + ++ L L Y R DQ RG + Sbjct: 121 GMLVTTLPAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYS 180 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++D+F + ++ LR+E FD+EV+ L F + + + + IYP + P Sbjct: 181 LRGGILDVFSNQMEE-PLRIEFFDDEVDSLRYFSLESQRSLEQVEEANIYPVSEQGKPSS 239 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + + ++ + + + + S Sbjct: 240 LKAFSLLDYLPKDCLVIVDEPVRVLEEGKRVEEEFIAYFSQRAEAEANQEKDQRPLDLFS 299 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 R TL + + + E+G + L + Sbjct: 300 VR-------TLMEECASRPIFFFSSLGGIS------------------EWGEVFENPLKS 334 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 ++ E Q Y+ EK + ++ Sbjct: 335 ISVECREIPFYGKQFAQFKGDMEKYKKEKVRISLYSPSQ----------------SRASR 378 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L E+R+ + L+E +R E Sbjct: 379 LAEELRKE---GLSAYCP-------DRLSE-------------------DREEGEDTENA 409 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G VL LR+G +P+ L+ + + D G +GR R L+ Sbjct: 410 GSIRVL--PRYLRKGFYLPKEKLLVMTEQDLYGQS--------LVGRKRRKKKQVESLHI 459 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 +T Y I G++K + IL G Sbjct: 460 GSLT--ELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKILYG---------DGGNLY 508 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D + +A K++ L G Q ++ +I +L L Sbjct: 509 LPVNKLDGIEKYAGKEAKAPKLNRLNGSEWQKTKSKVKGAVREIAKELLAL 559 Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 71/444 (15%), Positives = 134/444 (30%), Gaps = 41/444 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + V + ++ A + Q +E Sbjct: 601 KEDMESEKIMDRLVCGDVGYGKTEIALRAAFKAVQDSKQVAYLCPTTILAQQIYNGFVER 660 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M GI LS + + L + + ++ +H + + Sbjct: 661 MKGFPVEVGI------LSRFQSQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLL 714 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + + +SATP L S + D + Sbjct: 715 VVDEE--------QRFGVQHKERIKSLKENVDVLTLSATPIPRTLHMSLVGIRDLSILEE 766 Query: 417 GLLDPIIEVRPVATQVD-DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV-- 473 +D + V + + + I + N +V + ED L++ Sbjct: 767 APMDRLPIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIEDTALRLQKLLPEARI 826 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + E EI+ GE DVLV ++ GLD+P + + I DADK G + Sbjct: 827 AYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQ--- 883 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ Y + K++ E +R K + E G G+ + Sbjct: 884 -LYQIRGRVGRSNR---TSYAFLL-YKKGKSLTEESEKRLKAIREFTELG---SGIRIAL 935 Query: 594 VDILALGQNI-AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ---N 649 D+ G + G + V ++ K L+ + +G + Sbjct: 936 RDLEIRGAGNVLGAEQHG--------HMEAVGYELYTKLLRHAVLLEKGEKQEEEDFETQ 987 Query: 650 LEFEEAAQIRD-QLHQLRELFIAA 672 L+ + A I + + + A Sbjct: 988 LDVDLDAFIPESYMENEEQKLEAY 1011 >UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836_XENLA Length = 758 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 58/448 (12%), Positives = 131/448 (29%), Gaps = 50/448 (11%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 I + E + ++ R + + G + Sbjct: 236 MLPVLERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQ 295 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + P L D+L + + + + M Sbjct: 296 EAALRSGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFE---------- 345 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------- 418 + + + QT+ SAT + + + + V Sbjct: 346 -------EQMKEIIRLCSHQRQTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFL 398 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + +RP + ++ + V++ T TK+ A + L G +V LH Sbjct: 399 RQEFVRIRPNREGDREAVACALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHG 458 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++ +R+E +R + + D+LV ++ GLD+ V V + + + Sbjct: 459 NLSQTQRLEALRRFKDEQIDILVATDVAARGLDIDGVKTVIN-----LTMPGTVKHYVHR 513 Query: 539 IGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN--------------EEHG 583 +GR AR G+++ + M K I + + K + E+ Sbjct: 514 VGRTARAGKAGRSVSLVGEEERKMLKEIVKKAQAPVKARVIPQDVISKFRDKITKSEKEI 573 Query: 584 ITPQGLNKKVVDILALGQ----NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 L K+ ++ K + + G+++P + + L + E Sbjct: 574 YAVMQLEKEEREMQMSEAQISVAKKKLQQEKGGEAQPERSWFQTRDERRKEKLSHALQEF 633 Query: 640 EGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + M + +F ++ + +L Sbjct: 634 DLAMRGKKKRKKFLSDSKKKGELTSEER 661 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 82/487 (16%), Positives = 153/487 (31%), Gaps = 65/487 (13%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAP 65 +++ Q + + + G++GS K+F ++ + L +P +++ Sbjct: 1 MDNTLTKLLSQNPSFVDGLNAFQRKGKSV-IYGLSGSQKSFLLSQSFSAGLTKPVVIVVH 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 +K ++ F P P P++D + + ++ ++ Sbjct: 60 DKDHKEMWERDLAFFMPNA-------------PVLSFPTTDHVDFTTVARSLEVQGAQMR 106 Query: 126 ATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A + + VV+A+ + P LH + I++ L +L + Y R Sbjct: 107 ALALLAWQEPAVVIANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 DQ QRG F VRG+++DI+P SD +R+E F +E++ L F + + I +T+ Sbjct: 167 DQVEQRGHFAVRGDILDIYPVNSD-HPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVT 225 Query: 245 PK-----------THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 P YV I I+E L K + K + QRT Sbjct: 226 PFFLGKSDADSTLLSYVKEGTLIYDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRTVDA 285 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 + + ++ S L+G P + + +I +R Sbjct: 286 RNQVA----FTFMQQRSIGLTGFNPIGIQG-------KTMTSFERQIPLLTDEIKQWHRL 334 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQ 411 L R E S T + G + D Sbjct: 335 HHQVVIVL---------NNQQRREGIERALEGEHIVFTHSDTWIAKPNTVIILNGLLTDG 385 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 P L ++E Q +R + + + T L Sbjct: 386 FELPNSHLVVVVEGNIYGQQKRK----LRNKPKKGQEINYFTD-----------LTPGDY 430 Query: 472 RVRYLHS 478 V +H Sbjct: 431 VVHSMHG 437 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 75/517 (14%), Positives = 150/517 (29%), Gaps = 62/517 (11%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 + +L E+ YA+ + F + + E F++ Sbjct: 508 SIDDLADKLVEI-YAQREITEG---FAFLPD-----------QPWQQE-FEDAFPYEETE 551 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L P + + ++ A + Sbjct: 552 DQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQ 611 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q Q L G + N R + + + ++ +H + + Sbjct: 612 QHFQTFLNRFAPFGVKVDVLNRFRTT------SEKKQILKGVEDGSIDILIGTHSLLNKK 665 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + E + + A + +SATP L S Sbjct: 666 VVFKDLG---MLVVDEE-----QRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 V + V T + + V +L+ I++ A +V + E L Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777 Query: 467 EEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 E G R H + + EI+ D G +DVL+ +++ GLD+P + + I DAD Sbjct: 778 ESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + + R + Y + K + E +R K + E G Sbjct: 838 RLGLSQLYQM-------RGRVGRSRRRAYAYFM-YRPDKILSEAAEKRLKAIEEFTELG- 888 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G + +V M L++ I + + + Sbjct: 889 --AGFKLAMRDLEIRGAGNLLGSQQHGN-------IASVGFGMYVSMLEEAIAKAQNKEV 939 Query: 645 QHAQNLE---------FEEAAQIRDQLHQLR--ELFI 670 + +++ F + A I+D ++ + + Sbjct: 940 ERDVSIDPAIDLEVDAFIDDAYIKDSARKISVYQRLL 976 Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 100/337 (29%), Gaps = 53/337 (15%) Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 TL Y+ L+ + + + D ++ ++ F Sbjct: 237 TLLSYVKEGTLIYDE-PGRIQEALKKFLKEDPTHRKNHCDWNEL---QRTVDARNQVAFT 292 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 + ++I ++ + + + Q+ L EI+Q Sbjct: 293 FMQQRSIGLTGF--------------NPIGI------QGKTMTSFERQIPLLTDEIKQWH 332 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ +V++ ++ E + LE GE + + HSD V++ Sbjct: 333 RLHHQVVIVLNNQQRREGIERALE--GEHIVFTHSD-----------TWIAKPNTVIILN 379 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 LL +G ++P LV +++ + G + R + + D Sbjct: 380 GLLTDGFELPNSHLVVVVEGNIYGQQK-------RKLRNKPKKGQEINYFTDLTPGDYVV 432 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + I +G+++ ++I G + A + + + + Sbjct: 433 HSMHGIGKYIG------LKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKYIGNEGD 486 Query: 624 PM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 M + + + + + + A L A + Sbjct: 487 VPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQR 523 >UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) n=2 Tax=Dugesia japonica RepID=A4V6M8_DUGJA Length = 627 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 59/433 (13%), Positives = 125/433 (28%), Gaps = 40/433 (9%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + T F I K ++ E + + Sbjct: 83 DVIAQAKTGTGKTFAFALPVLTKLENSGIDGLKSGRKPKVIVM-APTRELVSQIASDFES 141 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 ++ + G + + P + D + L + +V + ++ Sbjct: 142 LISKNLKVLSIYGGVSYEKQTTALKNGVDIIAGAPGRVRDLINKGHLDLSKIEYVILDEV 201 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + + + E + PQT+ SAT N+ Sbjct: 202 DRMLDMGFSDIVEEILS-----------YIYPSETDKKGPQTLLFSATMPNWIHNIVKKY 250 Query: 408 VVDQVVRPT-----------GLLDPIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLT 455 + ++ + P + + IR N+ R ++ Sbjct: 251 LK-PDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIPDIIRVHGGGNQARCIIFCER 309 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ A++L + LH D+ +R +++ R G++ VLV N+ GLD+P++ Sbjct: 310 KKDADELASH-SAMKSDCHVLHGDVPQEKRELVLKKFREGKYSVLVTTNVAARGLDVPDI 368 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 LV + I GR R G I + + + + + K Sbjct: 369 DLVIQCHPP-----KDVEDYIHRSGRTGRAGRKGVCICFYEPKEKYDLQKVEKLAGFTFK 423 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + I LN + K+ + +S + + KA+ Sbjct: 424 RIFPPSAASIIEANLNDTIE--------AFKSIPETVCESFKESAIKLIEQFGAEKAMAL 475 Query: 635 KIHELEGLMMQHA 647 + ++ G + + Sbjct: 476 ALAKISGKVEELK 488 >UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q863_SULNB Length = 447 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 59/454 (12%), Positives = 128/454 (28%), Gaps = 39/454 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ +L ++ + + + E++ Sbjct: 21 YARPTPIQQKLIPALLDGQNAI-ASAQTGSGKTLAYLLPALQQINPEAEKV----THHYP 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L ++ E R ++ + G +E P Sbjct: 76 RLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETERLKKGVDVIIATPQRA 135 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +++ A + + H+ + + M+ K Sbjct: 136 LEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLE-----------------KIFTMMTE 178 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEI 439 Q I VSAT ++ + + I + + ++ + LL+ + Sbjct: 179 RSQKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKEALLAWL 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 E+VL+ K +A+ + E L +V LH + ER + + R G + + Sbjct: 239 ISS-GNYEKVLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRI 297 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ ++ +V D + I +GR R G AI Sbjct: 298 LVATDIAARGLDISDLDVVINYDIPH-----VKHDFIHRVGRTGRAGREGIAITLVSPDE 352 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + + K+ E P+ + + + + T K SRP V Sbjct: 353 IEQLHDLQKVLGGKIKEVILPE---YAPKEVKARGFLLHGPQRRKKSTSVKRESASRPGV 409 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + + + N + Sbjct: 410 KKGKKRKTTKRDGF-KAFDAAKKTKEAKTPNKKR 442 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 109/671 (16%), Positives = 211/671 (31%), Gaps = 96/671 (14%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ + L+ G GV S + F +A A +PT+V+ Sbjct: 2 LIDSLTFTLEKSGCLDAFWGKLDAGEDGTL--GVASSARPFLVAARFAHRPQPTLVVVAG 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + V F P + + R+ A Sbjct: 60 EDAAVAFSRSLAAYLGDERVMRF-------------PERSDYPFVPKPSDPAQVARRMEA 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMII------------DQRAIL 173 A+ R+VVVVAS A+ P + + + L+ G + + Sbjct: 107 VHALASGREVVVVASARALVRALPPAGSDVHVPVALSAGRELAAMPGAQAASVTEFEDFA 166 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L E Y + GTF VRG ID+FP + +R++ F +E+E + P TGQ Sbjct: 167 HALEERGYRNTGELDGPGTFAVRGGTIDVFP-GNLVYPVRLDFFGDELEEIRRIVPTTGQ 225 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + +P +IYP + + + +A ++++ A + Sbjct: 226 TIQALPDVSIYPVVEFSCSKRGLARARQKLERPAATN-----------------PVLRDV 268 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE ++ G + +L TL DY+ L V+ E + Y Sbjct: 269 LEKLDGGLRFDGSDMLLPYLY-----ATTSTLGDYVRPGALSVLLEPRSLFDDMSHAYD- 322 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 G S++ L E + + ++ Sbjct: 323 --------DAAGRAKGSSIPVDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELP---- 370 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ VA D L +R + V+ + R +D+ +HG + Sbjct: 371 ---------VKRVEVAGHPDKLFGRLRSLVDTDYTVVFSASNFRARQDMKLAFVDHGLPI 421 Query: 474 -RYLHSDIDTVERM-EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 L ++ D E R LR G +V+ L G+ +P+ L + +D +G S Sbjct: 422 QETLDAEEDADELEGIAKRRLRRGVVNVVDVDVPL--GMIIPKAKLAIVSLSDTQGASTS 479 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R +R+V+ I + + + E G + Sbjct: 480 ---------RPSRHVDITEITFPYQ-------PGDYVVHAAHGVAYFKELVRRDVDGTAR 523 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQ 648 + + + + + V P+ ++ + + + + A Sbjct: 524 DYLLLEYSEGDKLYVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAF 583 Query: 649 NLEFEEAAQIR 659 +L A + Sbjct: 584 DLVDVYARRAS 594 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 63/420 (15%), Positives = 116/420 (27%), Gaps = 41/420 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P V + ++ A + Q E Sbjct: 630 KADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHYTNFKER 689 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTL---FDYLPADGLLVVDESHVTIPQIGGMYRG 353 G + + R P + V+ +H + + + Sbjct: 690 CEPFGVRVEVLSRFR---------TPAQQAAALKGFQEGDVDVLVGTHRLLSRDVNPHDL 740 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G + N + +SATP ++ S V D + Sbjct: 741 GLVIIDEEQRFGVGHKEQMKNLRESI--------DVLTLSATPIPRTMQMSLSGVRDMSL 792 Query: 414 RPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--G 470 T + V D++S IR+ A +V + R E+ + Sbjct: 793 ILTPPDERRPVEVHVGEWDPDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVTAAAGE 852 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 RV H + + ++ D GE DVLV ++ G+D P + + I D+ + G + Sbjct: 853 ARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQ 912 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + Q GR R+ A Y M E + EH G+ Sbjct: 913 ----MYQLKGRVGRSCTQ-AYAYF------MFPEHMELTEEAAARLTALNEHTDLGSGMR 961 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + D+ G + V D+ + L Q + ++ L Sbjct: 962 IAMRDLEIRGAGSLLGAEQSGN-------MSAVGFDLFAQMLNQAVSATREGDLKAMDAL 1014 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 69/414 (16%), Positives = 137/414 (33%), Gaps = 34/414 (8%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 R + + L L + + + LTQ+T ++ G + Sbjct: 59 LHRVLSERKPKAGIRVLVMVPTRELAQQVMKDCEALTQQTG-LKTVIIRGGQEFQYQASL 117 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + P + ++L + ++D + + + M Sbjct: 118 LRRNPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDM----------------- 160 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNY-ELEKSGGDVVDQVVRPTGLL---DPIIEVR 426 + L QT+ +SAT + + + D + I + R Sbjct: 161 GFRDEVLAIAGQIRNDHQTLLLSATLKHRGVSSVAKDILNDAEFIQIKPEMLQENIRQQR 220 Query: 427 PVAT---QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + L+ + ++ +V T T+ AE+L L H +RV LH +I+ Sbjct: 221 IFSDGPAHKTKLVDWLLSHETF-QKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQD 279 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER I+ R G DV+V +L GLD+ V LV D +S + +GR Sbjct: 280 ERNRIMTRFRDGVVDVIVATDLAARGLDVEGVDLVVNFDI-----AQSGDEHVHRVGRTG 334 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT--PQGLNKKVVDILALG 600 R +G A+ ++ +I R + ++ + P + + Sbjct: 335 RAGQSGLAVSLVAAHDYNLMSSIERYLGIRFEPREIDSLKAKYKGPAKVKSSGKAVGHKK 394 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + T ++ + + N+ +P A Q I + ++ +NL +E Sbjct: 395 KKADTTTSRKKASKVRKRQTKNIGKRRAPAATSQPIEDGGFKPLKKKKNLAPDE 448 >UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Brugia malayi RepID=A8NRL8_BRUMA Length = 830 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 54/310 (17%), Positives = 97/310 (31%), Gaps = 31/310 (10%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS-RFLSGRGPGEPPPT 324 +A E L Q + + G EN Sbjct: 498 PIALILAPTRELVGQLYNQARKFANGTGVTVAKAYGQYKLFENIMELERGCNILFATMGR 557 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGD-RARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ + + + S + + M D + + PS Sbjct: 558 LKDFVINRKVKLHNISFFVLDEADRMLSQDSFQTDIINLVHRPDFPS------------- 604 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL---DPIIEVRPVA----TQVDDL 435 QT+ SAT + E + + + G +P++E + + D L Sbjct: 605 VKDRQTLLFSATITSEVKELAAKVLKENHAFVSNGKTISANPLVEQNFIEVTSENKFDKL 664 Query: 436 LSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + + + N R LV K+MA+ + L + + + D +R E + D Sbjct: 665 IQLLEEDREHNGDVARTLVFVQRKQMADVIALNLIQKNIQSSSISGDRMQKQREEALSDF 724 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 R G VLV ++ G+D+ ++ V D + + IGR R GKA Sbjct: 725 RKGNIKVLVATDVCARGIDVKDLQHVINYDMP-----SDRVTYVHRIGRTGRLHRGKATS 779 Query: 553 YGDKITPSMA 562 + + A Sbjct: 780 FINLADDDPA 789 >UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30P62_SULDN Length = 411 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 54/403 (13%), Positives = 115/403 (28%), Gaps = 50/403 (12%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + + K + + T+ Sbjct: 27 IQERVIPLVLERHDIMAKAQTGSGKSASFILPILELLSRDSYEGKAKIKVLVLTPTRELT 86 Query: 295 EMMNELGYCSGI-------------------ENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + E G + ++ D L ++ Sbjct: 87 QQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLFNIQKGCDILVATSGRFLDILSKKQMI 146 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + M E Q + SAT Sbjct: 147 LSHVDFFVLDEADKMLDFG-----------------FAEELELILEALGQKRQNLLFSAT 189 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERV 449 L + + + + +P +E + LL + + E V Sbjct: 190 YPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILVSRENRAPLLRHLLKS-EKYELV 248 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V +KR A+++ +HG H D+ +R + + + + +L +L+ G Sbjct: 249 IVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILFATDLVSRG 308 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+ +++ V D RS I IGR AR G AI + D + + I + Sbjct: 309 LDINDITCVINFDLP-----RSSADYIHRIGRTARAGKAGMAISFIDHEDEAHFRLIEKR 363 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 R K+++ E +T + ++ G+ +K Sbjct: 364 SNIRLKREQI-EGFELTTEAPKREKGKEPIKGKGKSKKDRARE 405 >UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMK6_ACIBL Length = 423 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 21/321 (6%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT-LFDYLPADGLLVVDES 340 + L + +++ G + S L G + + +VV Sbjct: 98 QVLILVPTRELAMQVHGVYEQLKGKKLKSAAL---VMGGTSERNQIQSIRSGARVVVATP 154 Query: 341 HVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + L E + + QT+ SAT G Sbjct: 155 GRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPRDKQTLCFSATMGPA 214 Query: 400 ELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + V G + + P+ + D L + + + LV Sbjct: 215 VSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQLLYE---QEGKTLVF 271 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR E L + L G +H D +R + G VLV ++ GLD+ Sbjct: 272 ARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVLVATDVAARGLDV 331 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 +++ V D + I +GR R G A + I T + Sbjct: 332 DDIAHVINFDLP-----QVPEDFIHRVGRTGRAGATGMATSLVSGAEVFELRNIERTLKL 386 Query: 572 REKQQKYNEEHGITPQGLNKK 592 + ++ N + ++ Sbjct: 387 KIARRDLNATTTPKREVKHRD 407 >UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B6HEA9_PENCW Length = 692 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 88/323 (27%), Gaps = 27/323 (8%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L E +RL + G S + P L Sbjct: 236 LIVCPTRELATQIFDEARRLC-YRSMLRPCVAYGGAPSRQQREELQKGCDILIATPGRLL 294 Query: 327 DYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ L + + I + M D + E Sbjct: 295 DFMAQTHVLSLRRVRYTVIDEADEMLESDWEE-------------EFKKIMSGGDVNEDA 341 Query: 386 APQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 + + SAT + + + + V G I ++ L Sbjct: 342 DHRYMMFSATFNKEFRKLAKQYLNENHVRLRVGRAGSSHHNVVQDIIWADQPKKMRALYD 401 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R L+ +K + + +YL G +H ER + +R R + Sbjct: 402 LLISM--PPVRTLIFVNSKEQVDFVDDYLFNSGMPTTSIHGGRTQREREDAMRAFRTAKC 459 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 ++V + GLD+ V V D + IGR AR G A + + Sbjct: 460 PIMVATGVSARGLDVVNVLHVINYDLPS-AIHGGITEYVHRIGRTARIGNEGIATSFYND 518 Query: 557 ITPSMAKAIGETERRREKQQKYN 579 +A+ + + ++ Sbjct: 519 RDEGIAEDLVKILIECDQAIPEF 541 >UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ETV2_ARCB4 Length = 351 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 50/348 (14%), Positives = 96/348 (27%), Gaps = 38/348 (10%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G S + L +++ + + + V I ++ M Sbjct: 33 GGVSSKEQEKKLSNGIDILVSTSGRLLEHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDL 92 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K Q + SAT + + + D VV Sbjct: 93 E-----------------KILPNIGQNRQIMMFSATLNQNVKKLAKEFLSDPVVIEVAKQ 135 Query: 420 DPII------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + V + +LLS + +VLV K+ A+DL +L G Sbjct: 136 RSSVKIIDQQIVLVDEDKKAELLSYLIGSRN-YSQVLVFVNMKKEADDLVAHLNLDGLPA 194 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H DI R + +R + G+ VLV ++ G+D+ + +V + Sbjct: 195 ECIHGDIRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLPVVVN-----FALPETIT 249 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY--NEEHGITPQGLN 590 IGR R N G AI I + + + E P+ Sbjct: 250 DYTHRIGRTGRAGNAGTAITLLSVKDYKFMIEIEKELIINIPRIEVEGFEATEKKPRLFK 309 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + + + + ++ + + + Sbjct: 310 ARPKPLSQRKAESKAKEQN------KTAKTSTKKRKITKRDSNKNFRK 351 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 53/412 (12%), Positives = 97/412 (23%), Gaps = 63/412 (15%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + R + L + + P + I +E F Sbjct: 10 DELARAVESLGFEKPT------------------PIQEKAIPY-------LIEGERDFVG 44 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 L + + R + EL + L + Sbjct: 45 LAQTGTGKTGAYGLPLIQSIDLSIPRPQAIVICPTRELCLQIAGDLRDFAKYM------- 97 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + + P L D + + + V + + Sbjct: 98 -EDIRVAAVYGGADIVKQIRTVKGGAQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M +T SAT + Sbjct: 157 MLNMG-----------------FQEDINAILSSLPDERRTWLFSATMPKGVAAIAAKYQT 199 Query: 410 DQVVRPTGLLDP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + V G + I A L I LV T++ +++ Sbjct: 200 NPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFG-LVFCRTRKDTQEIA 258 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L G LH D+ +R +++ R VL ++ GLD+ ++S V Sbjct: 259 EALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARGLDVDDISHVIHY-- 316 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 + GR AR GK+I K + + + Sbjct: 317 ---VLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKFSFQ 365 >UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A36 Length = 483 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 100/339 (29%), Gaps = 13/339 (3%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + + + L + + + ++ ++ + G + + Sbjct: 53 RTGTGKTAAFGIPLCEKIVWEENLPQALVLEPSRELAVQVSNELFHIGRRKRLK-VPAVF 111 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRP 376 G P + +VV + I + R + E L Sbjct: 112 GGFPIDKQMRTIKQKSHIVVGTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEV 171 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVD 433 + + + SAT + D V+ +P I + Sbjct: 172 KQIMALLPKGGRVLLFSATLDEKVRLLVDEYMADAVMIAPEPDAEEEPAISQVVYRADPE 231 Query: 434 DLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + +++ E ++ T+ M L + L+ +H +++ ER++ + Sbjct: 232 EKYDLLKRTLILENPESCMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDA 291 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 R G F L+ ++ G+D ++ LV D F + + IGR RN NG+A Sbjct: 292 FRRGGFRFLIATDVAARGIDFDKIDLVVNYD-----FPGGRETYVHRIGRTGRNGENGRA 346 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + M + R E + Sbjct: 347 VSLLCESEERMLHMVEAYMGRELSVTTCPEPDEEATKAF 385 >UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF36_XENLA Length = 800 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 114/380 (30%), Gaps = 31/380 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + T F+ ++ A + L E L Sbjct: 260 DVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTRELAIQITNE---LR 316 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 T+ G + ++ P + D + L + HV + ++ Sbjct: 317 SMTKKLKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEV 376 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M+ + + + P PQT+ SAT ++ + Sbjct: 377 DMMFDVGFSEQVEEILSVRYKPD------------PEENPQTLLFSATCPDWMYNVAKKY 424 Query: 408 VVD-QVVRP-TGLLDPIIEVRPVA-------TQVDDLLSEIRQ-RAAINERVLVTTLTKR 457 + G + +Q +L +I Q + + + ++ +K Sbjct: 425 MRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFCDSKL 484 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A +L+ + + LH D+ ER +++ R G F+VL+ N+ GLD+PEV L Sbjct: 485 QAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDL 544 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V + A + + + GR R G I + + + + K+ Sbjct: 545 VVLYSAP-----KEADAYVHRSGRTGRAGRTGVCISLYEPWEKHYLRNVERSTGITFKRV 599 Query: 577 KYNEEHGITPQGLNKKVVDI 596 + + + Sbjct: 600 GIPSLMNVAKSSSADAIKSL 619 >UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=cellular organisms RepID=A1TMG8_ACIAC Length = 446 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 52/348 (14%), Positives = 94/348 (27%), Gaps = 36/348 (10%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D + + L + + + + + Sbjct: 109 RLKIAIACGGVSINPQLMALRGGADAVVATPGRLLDLVEHNALSLSQVRALVLDEADRLL 168 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + Q + SAT + G + D Sbjct: 169 DLG-----------------FAEELQRVLALLPAQRQNLLFSATFEPGVARLAEGLLRDP 211 Query: 412 VVRPT---GLLDPIIEVR---PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + P I R A + LL ++ + RVLV T+ AE + E Sbjct: 212 LRIEIAGAPGTAPDIAQRAIAVEAPRRTQLLKQLLTQEPGWTRVLVFVATQYAAEHVAEK 271 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L + G H + R +++++ R + VLV +L G+D+ + V D Sbjct: 272 LYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIAGLPAVVNYDLP- 330 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 R+ + IGR R +G A+ + + + RR Q E Sbjct: 331 ----RAAADYVHRIGRTGRAGASGVAVSFVTPEAAPHWRLLA----RRHGLQALPVE--- 379 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 G + A+ K Sbjct: 380 QVAGFEVALAPAAQETGATEDAPARPGKLPPGTGGIKGRRPSKKDKLR 427 >UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano RepID=A9J0E5_9TURB Length = 929 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 49/360 (13%), Positives = 100/360 (27%), Gaps = 36/360 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + +A E + + R Sbjct: 528 QTGSGKTAAFLLPLAKMIAELDTNDSTVAQYTTYPVALILTPTRELCNQIYDFARGFRAG 587 Query: 292 FDL-EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++ G + P L D+ + + + + + + M Sbjct: 588 TNIHAKRVYGGPKTEYLRAELANGCHILVATPGRLKDFAERNIVSLNKTRLLVLDEADQM 647 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + Q + SAT N + + + Sbjct: 648 LD-----------------RGFMDSVTWTLDQMPSDRQIVMFSATFPNQIQALAQQYLQN 690 Query: 411 QVVRPTG-----LLDPIIEVRPV--ATQVDDLLSEIRQRAAINER----VLVTTLTKRMA 459 + G D EVR V + L+ ++ + + +L+ +KR A Sbjct: 691 YLYLTVGQVGAANPDVTQEVREVQQDDKQAALIEILKHCRSDPSQADDRILIFVESKRRA 750 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + + L + G +H D ER +R G ++V N+ G+D+ + LV Sbjct: 751 DYVGLMLSDGGFPCTTIHGDRLQREREISLRSFLRGRLPIMVATNVSARGVDINGIELVI 810 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQK 577 +D IGR R GK+I + D ++A + + + + Sbjct: 811 NMDLPN-----DFDMYAHRIGRTGRCGNPGKSISFYDHGRDSALALKLRQNLEKSGQSVP 865 >UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12 Tax=Gammaproteobacteria RepID=B3PER7_CELJU Length = 477 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 45/360 (12%), Positives = 87/360 (24%), Gaps = 32/360 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + L L Q+ Sbjct: 71 VTAQTGTGKTAAFGFPLLQQLLEKPRATQPGHTR---ALVLAPTRELVEQVADNLQQYAH 127 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T + + G + P L +++ + + + + + Sbjct: 128 FTSLTIAAV-YGGVKHSSQANKLQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEAD 186 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M K PQ ++ SAT + + Sbjct: 187 RMLD-----------------MGFVGEISKLLNGMGKKPQILFFSATLTQSVTTLAKEIL 229 Query: 409 VDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLT 463 + + +E + +V+V + T+ A+ L Sbjct: 230 ARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTHNWFQVMVFSSTREEADKLI 289 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E +HS+ R +++ + G+ VLV + GLD+ + V LD Sbjct: 290 NALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATEVAARGLDIQGLDYVVNLDL 349 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + +GR R G AI I + + K+ K Sbjct: 350 PFF-----IEDYVHRVGRTGRAGSKGIAISLVSASDEPKVALIEKAIGTKIKRVKIKGFE 404 >UniRef50_C7DHL0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHL0_9EURY Length = 434 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 99/331 (29%), Gaps = 30/331 (9%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I++ + ++ A E + E R ++ G ++ Sbjct: 60 IMEKISRGRDIEALILAPTRELAVQIFESGYKLRDNEIRAVVAYGGVSINMQMQKISRGC 119 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P + D + L + ++ + + M + Sbjct: 120 NILIGTPGRILDLISRGVLDLEKVKYLVLDEADIMLDMGFI-----------------DD 162 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQ 431 QT++ SAT + + + G + I Sbjct: 163 VKDIVRHTGRGRQTMFFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEVG 222 Query: 432 VDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ S + ++ ++ TK AE L L G +H + R + Sbjct: 223 RNEKFSALLAYIDEYKPKKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTL 282 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + + + +LV N+ G+D+ ++S V D + R + +GR+AR +G Sbjct: 283 NNFKT-DATMLVTTNVTARGIDIRDISDVINYDCP-----DNPRVYLHRVGRSARMGADG 336 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYN 579 +A ++ I + K+ + N Sbjct: 337 RAFSIITHQQRNLISDIEYMAKIDVKELRLN 367 >UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids RepID=A5C4J0_VITVI Length = 786 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 58/389 (14%), Positives = 106/389 (27%), Gaps = 67/389 (17%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + E +R + +L L + ++ E+ + Sbjct: 173 PIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPY----LSTVCVYG 228 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPL 377 G T + L +VV I I + + L E L + Sbjct: 229 GVSYITQQNALSRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVE 288 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP------------TGLLDPIIEV 425 E Q++ SAT + + + + + + +P + Sbjct: 289 VILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTL 348 Query: 426 RPVATQVDDLLSEIRQRA----------------------------------AINERVLV 451 V + L I+ A A + +V Sbjct: 349 DHVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIV 408 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T TKR A++++ L LH DI +R + R G+F VLV ++ GLD Sbjct: 409 FTQTKRDADEVSMALTNS-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 467 Query: 512 MPEVSL---------VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 +P V L + + + + GR R G AIL Sbjct: 468 IPNVDLKYVDLLFLQIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRT 522 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLN 590 K++ + + + Sbjct: 523 VKSLERDVGCKFEFISPPAIEEVLESSAE 551 >UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum RepID=C7DZC6_ACYPI Length = 354 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 50/338 (14%), Positives = 94/338 (27%), Gaps = 26/338 (7%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM-MNELGYCSGI 306 + +I+ E E ++ L + + G Sbjct: 1 QKLLMDPQILVKDRNHSEPQVVIMAPTRELAVQIKMVVLKLARGTGISSFVCYGGTLVSH 60 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + P L +++ + + ++ M D + F Sbjct: 61 QKNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHF 120 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLDPI--- 422 +PS + QTI +SAT + + + + + G++ Sbjct: 121 SMPS-------------VMDRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKD 167 Query: 423 IEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+ + + + +V K A+ L YL E +H D Sbjct: 168 IKQNFCLVNRFNKRDILTSILKKDSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRL 227 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R + D R + +VLV + GLD+ V+ V D +Q IGR Sbjct: 228 QDQREIALDDFRTRKMNVLVATTVAARGLDIKCVNHVLNYDMPL-----VIEEYVQRIGR 282 Query: 542 AAR-NVNGKAILYGDKITPSMAKA-IGETERRREKQQK 577 R G A D + I ++ Sbjct: 283 TGRLGNKGIATSLFDPDEDYLLVDPIISILASANQEIP 320 >UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BZG6_THAPS Length = 466 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 91/309 (29%), Gaps = 21/309 (6%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 +L L + ++ +EL F S G L + Sbjct: 69 RKGRLPSMIVLCPTRELARQVEDELSAVCKP--LGLFSSCFHGGVSYDPQARALRQGVDV 126 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEE----FEALAPQTI 390 +V I I L E L E Q + Sbjct: 127 IVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNREKTQCL 186 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT------GLLDPIIEVRPVATQV--DDLLSEIRQR 442 SAT + E D + + + + D + + Sbjct: 187 LFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKKAILEDI 246 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A+ + +V T TK+ A++L + +H DI +R + R G F+VLV Sbjct: 247 IALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGAFNVLVA 306 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ G+D+ +V LV + R + + GR R +G ++L + Sbjct: 307 TDVAARGIDIKDVDLVIQFEPP-----RDVDTYVHRSGRTGRAGASGISVLLFQQNQARD 361 Query: 562 AKAIGETER 570 I ++ Sbjct: 362 IVRIEKSLG 370 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 96/626 (15%), Positives = 183/626 (29%), Gaps = 90/626 (14%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 T++L P+ A +L ++ + V P +T + S Sbjct: 41 TVILTPSGRGAEELARDLSCWTRGVEV---------------FPDWETLPHERLSPRTDT 85 Query: 120 EQMRLSATKAMLERRD-------------------VVVVASVSAIYGLGDPDLYLKMMLH 160 R+ A + +V + A + + + Sbjct: 86 MARRIWALHRLTHPEAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTKILSYPLFK 145 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 VG + + R LA L Y R + RG + +RG ++D+F A S +R+ELF +E Sbjct: 146 AQVGKAYGRDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSAVS-PHPVRIELFGDE 204 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + F + + + P E + +L Sbjct: 205 IDSIRPFAVSDQRTFNQEFQSVTAPACREFLLDETARVHAASLAAQL------------- 251 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + + Y G+E+ G G LF+ LP LV + Sbjct: 252 -------PQAAEILNLAAQGIYSEGLESL-----GALLGAEMKPLFELLPPGARLVATDL 299 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS-ATPGNY 399 + + + + + PL+ L + VS A G Sbjct: 300 PRLEARAVELGETTAE----FLAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMK 355 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 L S + P+ ++S IR+RA + V++ + M Sbjct: 356 TLRISPFATHESATTSGAETVPLPTTGATG-----IISTIRERAREHWTVVIAATSNGMV 410 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + L L E+ V R G+ V V + EG + E L+ Sbjct: 411 QRLHRLLAENDIPA--------QVSADLDAEPERSGKTWVTVA--PITEGFALAEAKLLV 460 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 I +A+ G + + K I R K +K Sbjct: 461 ISEAEALGKRQ---ARHHEQKVKLPTRRRKTIDPLSLSPGEYVVHAQHGIGRFVKLEKRT 517 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 G + +++ V + ++ + P D + + + + ++ Sbjct: 518 I--GKGNKATSREYVVLEYA---PSQRQGSKDLLWVPTDSLDMLSKYVGGET--PTLSKM 570 Query: 640 EGLMMQHAQNLEFEEAAQIRDQLHQL 665 G A+ + I +L +L Sbjct: 571 GGTDWNKAKQKARKAVKDIARELVRL 596 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 61/473 (12%), Positives = 130/473 (27%), Gaps = 38/473 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + EL ++ E + D LT P + + ++ Sbjct: 607 AFSPDTPWQREL-EDSFEYVETPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVR 665 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + ++Q + LS + Sbjct: 666 AAFKAVQDGKQVAVLAPTTLLVSQHLETFQNRFAAFPITVAA------LSRFTTVKEATR 719 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L + VV +H + + + + Sbjct: 720 IKADLADGKIEVVVGTHALLSGKVRFKDLGLVVIDEE--------QRFGVEHKEALKALR 771 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRA 443 + +SATP LE + + T + + V A + + IR+ Sbjct: 772 TNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRREM 831 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V + + ++L+ R H + + +++ D EFDVLV Sbjct: 832 LRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVLV 891 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + I A++ G + + + + Y Sbjct: 892 STTIVENGLDVTNANTIIIDRAERMGLSQ-----LHQLRGRVGRGRERGYAYFLYPGGDT 946 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 ++ K + G+ D+ G + Sbjct: 947 LS------ETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNLLGGEQSG-------HIA 993 Query: 622 NVPMDMSPKALQQKIHELEGLM--MQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 ++ D+ + + + + G A NLE A I + + + L + A Sbjct: 994 SIGFDLYVRMVGEAVAAYNGEEPAEDTAVNLEIPVDAYIPEDYLEAQSLRLDA 1046 >UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricomycotina RepID=DBP5_CRYNE Length = 546 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 40/392 (10%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F + +P P + + + + +R + + + Sbjct: 168 FQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPS 227 Query: 287 TQRTQFDLEMMNELGYC---------SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + E+++++G G + + + + P TL D L Sbjct: 228 RELARQIQEVIDQIGQFTQVGTFLAIPGSWSRNSRIDKQILIGTPGTLVDMLMRGS---- 283 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRL-PSALDNRPLKFEEFEALAPQTIYVSATP 396 + R L E + L + + ++ Q + SAT Sbjct: 284 -----------RILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLFSATF 332 Query: 397 GNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + E + + + + Q + LS + I + Sbjct: 333 NDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCLVIG-QS 391 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V K A+ + E L G V LH D + ER I+ R GE VL+ N++ G Sbjct: 392 IVFCKRKVTADHIAERLISEGHAVASLHGDKLSQERDAILDGFRNGETKVLITTNVIARG 451 Query: 510 LDMPEVSLVAILDADKEGF---LRSERSLIQTIGRAAR-NVNGKAILYG-DKITPSMAKA 564 +D+P V++V D G + I IGR R G ++++ D + S + Sbjct: 452 IDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRSKSDVER 511 Query: 565 IGETERRREKQQ--KYNEEHGITPQGLNKKVV 594 I T + K+ + + + L + Sbjct: 512 IMNTLGKPMKKIDARSTTDIEQLEKALKLAMK 543 >UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Tax=Dictyostelium discoideum RepID=DDX49_DICDI Length = 508 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 58/436 (13%), Positives = 121/436 (27%), Gaps = 59/436 (13%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E+ + F I + + ELA + Sbjct: 37 EILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIG 96 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVD 338 + G + + P L +L + + Sbjct: 97 APMNVNC---------SVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKF 147 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + + D + + P QT+ SAT Sbjct: 148 CKFLVLDEADRLLGEDFELEIASILEHLPPPE---------------KRQTLLFSATMTK 192 Query: 399 YELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + L P T+ L+ +++ +V Sbjct: 193 NLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKH--EGSSAIV 250 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E + L + LHS +D R+ ++ + G+ VLV ++ GLD Sbjct: 251 FVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLD 310 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 +P+V +V S + I +GR AR +G+AI + S+ K I E + Sbjct: 311 IPDVQIVINY-----KLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIK 365 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ + K +++ K + + D + + K Sbjct: 366 KQLELYKTDDDEV-------------------FRHLKEASTARKIVEIHLDEIEFGVKQK 406 Query: 631 ALQQKIHELEGLMMQH 646 + + +EL+ + + Sbjct: 407 ERRTERNELQKQLKEV 422 >UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase (Fragment) n=4 Tax=Cryptosporidium RepID=Q5CWJ1_CRYPV Length = 738 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 52/385 (13%), Positives = 110/385 (28%), Gaps = 29/385 (7%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + + P + + + + + ++ E L + Sbjct: 109 KTGTGKTLAFVLPVIERLLKKGKFDPNKHGRRPLVLVLLPTRELAQQVSNEFELMKGKDR 168 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G + P + D++ L V S +T+ + M Sbjct: 169 YKVCSVYGGSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLE 228 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQ 411 + R + Q + SAT + + D Sbjct: 229 MGFKETVDKIIDCVRKETGDGE-----THSRQNKFQVLLFSATVPPWVKNILTEIMSSDT 283 Query: 412 VVRPT----------------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 V + + + L I A IN + ++ T T Sbjct: 284 VTVDVTHISIHGEEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTET 343 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ A ++ E + + LH DI +R ++ + G + LV ++ GL + +V Sbjct: 344 KQTANEIAMR-SEISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDV 402 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 ++V R + I GR R G AI++ + +I + + + Sbjct: 403 AVVIQ-----LAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQ 457 Query: 575 QQKYNEEHGITPQGLNKKVVDILAL 599 + + I + + D+L Sbjct: 458 RIGVPQYEEILQKTADSIGKDLLEK 482 >UniRef50_D2KCE8 CNB00610 n=1 Tax=Cryptococcus heveanensis RepID=D2KCE8_9TREE Length = 974 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 68/469 (14%), Positives = 136/469 (28%), Gaps = 58/469 (12%) Query: 214 VELFDEEVERL--SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 + + D+ ++ L F T S+IP P + L R Sbjct: 34 LNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDILGMARTGSGKTLAYLIPLLQRI 93 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNEL---------GYCSGIEN--------YSRFLS 314 + L + +++ + G G E S + Sbjct: 94 GSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRGKGKGKEKTSDRDGKVESLRWA 153 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALD 373 GE T FD + + +V+ + M + E D Sbjct: 154 LIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQVVVYDEADRLFEMGFD 213 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVA- 429 + + Q + SAT + E + +V+ ++ + P +++R + Sbjct: 214 VQLREILSRLPPTRQNLLFSATLPSSVAEFAKAGLVNPLLIRLDSEHKISPDLDLRFFSV 273 Query: 430 ---TQVDDLLSEIRQRAAIN---------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + LL ++ + + +V TK + + E L+ G R +++ Sbjct: 274 KPIEKDAALLVLLKDVIKVPLSSGDNSHSPQAIVFVSTKHHVDYINELLKTAGFRSSHIY 333 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 S +D V R + + R DVLV ++ GLD+P + V D F R + Sbjct: 334 SSLDQVARHQQLHHFRNRLTDVLVVTDVAARGLDIPVMDHVVNYD-----FPSGPRVFVH 388 Query: 538 TIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR----------------REKQQKYNE 580 +GR AR G A + + Q Sbjct: 389 RVGRTARAGRKGNAWSLVTRDDWPYLFDLQTFLGLDRMGSNGDMLRNIPDDNISQMIEYI 448 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + Q N ++ + +++G+ + ++ Sbjct: 449 TTSLDEQAPNLEMQRNVMRKGQAMFERSRGKADPASYRKAKLFGKELDS 497 >UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=Sulfolobaceae RepID=C3NII4_SULIN Length = 360 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 29/301 (9%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 +L ++ L Q L + + ++ G +Y + P L D Sbjct: 82 ILSPSRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQSKIVVGTPGRLLDLWSKGK 141 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + V + + M ++ A + S Sbjct: 142 IDFSGYDFVIVDEADRMLDMGFIDDIRMILNH------------------CNAKIAGFFS 183 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD----DLLSEIRQRAAINERV 449 AT + + + D P+ EV+ +V D +S++ + E++ Sbjct: 184 ATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEIN-GEKI 242 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV T+ A L L+ G V L D+ R++ + G+++VLV +L G Sbjct: 243 LVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRG 302 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 +D+ +V+ V D R + I +GR R G+AI + M K I Sbjct: 303 IDIIDVNKVINFDIP-----RDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNL 357 Query: 569 E 569 Sbjct: 358 L 358 >UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium difficile RepID=Q185X0_CLOD6 Length = 497 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 67/486 (13%), Positives = 144/486 (29%), Gaps = 76/486 (15%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL+ L L Y + + ++ P ++ + Sbjct: 12 EKILKSLKSLGYNIPSRVQR-----------EVIP---------------KLLKGQNLVV 45 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I + I + ELA + K + + L++ R + Sbjct: 46 RSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAI 105 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + P + D++ + + + ++ I + Sbjct: 106 F---------GKQSIKDQIAELKQRVHIVVATPGRILDHINRGSIKLENVKYLVIDEADK 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ + K SAT ++ Sbjct: 157 MFNKGFV-----------------EQMEKILLNLPKEKIVSLFSATIDEEIKYICEKYML 199 Query: 410 DQVVRPTGL-----------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 D V +D I + L I + V++ TK Sbjct: 200 DYSVINIEENESDTNQKTRQIDDKIIKANGREKYILLKELIYSE--NPKSVIIFCNTKEK 257 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 L + + G +R LH+D+ R+ +I+D + +F++LV ++ G+ + ++SLV Sbjct: 258 VSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVASRGIHIDDISLV 317 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + + I IGR R +GKAI + + I K Sbjct: 318 INYDVP-----QDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENIETYIG-----YK 367 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 NE I + V + I K +K + + + ++ +++ + ++ ++ Sbjct: 368 INELTDIEQSRITHGKVLFEEYSKGILKKVSKRKKVDKNSYKSKDIKLNIESEVVKLYLN 427 Query: 638 ELEGLM 643 + Sbjct: 428 AGKKKK 433 >UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=3 Tax=Hydra magnipapillata RepID=UPI00019267D4 Length = 685 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 49/350 (14%), Positives = 101/350 (28%), Gaps = 32/350 (9%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E + L E + ++ + G + Sbjct: 124 TERGRVPLVLALAPTRELAMQIYQEVEKFKPNNVQVSCFYGGSSYEKQEGELRRGVDFLV 183 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P + D + L + HV + + M + Sbjct: 184 GTPGRIADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKH-------------- 229 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP----------TGLLDPIIEVRPVA 429 A PQT+ SAT + + S + + + + Sbjct: 230 SYTSARKPQTLLFSATVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATTVQHKVIKCSYW 289 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + ++ + + ++ T TK+ A +L+ +E + LH DI +R + Sbjct: 290 ERPLLIKDIMQLYSGKFGKTIIFTTTKQEANELS--VESSIPDSQVLHGDISQSQREITL 347 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + R G+F+ L+ ++ GLD+PEV LV + I GR R G Sbjct: 348 QGFRNGKFNCLIATDVAARGLDIPEVDLVIQTEPPN-----DIDFYIHRAGRTGRAGRSG 402 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 +++ S A+ + ++ I + + + Sbjct: 403 VCVVFYKPGQESEIAAVEKRTGVTFEKITPPNPEEIVSSCADDAIRSLEK 452 >UniRef50_Q0UN57 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=2 Tax=Pleosporineae RepID=PRP5_PHANO Length = 1184 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 67/413 (16%), Positives = 124/413 (30%), Gaps = 33/413 (7%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ L + L+++NEL + G+P + Sbjct: 609 QRPLKPADGPIGLILAPTRELSLQIVNELKPFLNAS--GITIKCAYGGQPISDQIAMIKR 666 Query: 332 DGLLVVDES-HVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 G+ ++ + I + + R L E + + +K Sbjct: 667 GGIHILCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPD 726 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP--VATQVDDLLS 437 QTI SAT + + G + I + P ++ LL Sbjct: 727 RQTILFSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLH 786 Query: 438 EIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVR-YLHSDIDTVERMEIIRDLRL 494 + Q + +E +VL+ T + AEDL L + +H D +R E I + + Sbjct: 787 HLGQTFSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEFKQ 846 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G ++L+ ++ GLD+P ++LV D + GR R G A+ Sbjct: 847 GLLNILIATSVAARGLDVPGLALVYNFDCPTH-----LEDYVHRCGRTGRAGNKGLAVTL 901 Query: 554 G-DKITPSMAKAIGETERRREKQQK------YNEEHGITPQGLNKKVVD-ILALGQNIAK 605 + A I + + + N H G K G + Sbjct: 902 IENPGQERFAVHIVKALKESGAEVPDDLQAMANAFHEKVKSGTEKYYNVGFKGKGLDELD 961 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 K + K+ + E A++ + AA+ Sbjct: 962 ASRALDKKREKRALKLGDDDASDDEPDLPKLKKPEASGPGVAKSTNGDAAAEP 1014 >UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteobacteria RepID=Q30YG9_DESDG Length = 530 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 96/307 (31%), Gaps = 14/307 (4%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E+ + + T+ + ++E R + G L + Sbjct: 123 ESARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQ-LRTGVDI 181 Query: 336 VVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ + + + L E + + + QT+ SA Sbjct: 182 VLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQTMLFSA 241 Query: 395 TPGNYELEKSGGDVVDQVVRPTGL--LDPIIEV--RPVATQVD-DLLSEIRQRAAINERV 449 T E + + V + P + PV + LL + + A + V Sbjct: 242 TMPAPLRELAEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKTPLLKYVLRAFARD-SV 300 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV T+ A L + L + G L ++ R + R G F V+V ++ G Sbjct: 301 LVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRVMVATDIAARG 360 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 +D+ +V V D F S + + GR R + +G A+ + + + + Sbjct: 361 IDVSQVGYVINYD-----FPPSVEACVHRAGRTGRASNSGVALTFVTQEDEPQVRTLERV 415 Query: 569 ERRREKQ 575 + Sbjct: 416 LGGALSR 422 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 79/474 (16%), Positives = 157/474 (33%), Gaps = 70/474 (14%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 ++ +A + +R +VL + A +L + F P + Sbjct: 16 NLSQGSLPLALARYLPH-KRLKVVLTQDAEQALRLQTAWRFFRPHDTA------------ 62 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKM 157 ++P +T + S ++ + RLSA + V+ V+ P Sbjct: 63 -VFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGR 121 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L G +D + L + Y G F VRG ++D+FP S+ + R++LF Sbjct: 122 TFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLF 180 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D+E++ + FD T + +S + + P + T E +EE+ Sbjct: 181 DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPND---- 236 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + ++ + +G+E Y TLFDY+ D L V Sbjct: 237 -------------AAVYKAVSNGHFGAGVEYYLPLFFENEL----ETLFDYIGEDALFVS 279 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + ++R E + L PQ +Y+SA Sbjct: 280 L--GDVHAEANRFWSDVKSRY---------------AMAQGDETYPPLLPQHLYLSADVF 322 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA-AINERVLVTTLTK 456 L+ G + D + L D + + L ++ A R+L+ + Sbjct: 323 AGRLKNYGQVLPDVSGKEHALPDLAVNRQSDEP-----LQALKDFQTAFEGRILLCAESL 377 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 E + +L+++G + + + + +++ + L G Sbjct: 378 GRRETMLGFLQQNGLKAKSVSD----------WQGFLSAHEPLMITVAPLAYGF 421 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 60/400 (15%), Positives = 122/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q Q + + + Sbjct: 850 PMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFAD--FPV 907 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + SRF + + + L + +V +H + + + Sbjct: 908 KVASLSRFNNSKATKAA----LEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRF 963 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + ++ATP L + + D + T + Sbjct: 964 GVRQKEQ--------LKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAV 1015 Query: 425 VRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + + + +V E++ E LE R H + Sbjct: 1016 KTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLR 1075 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++RD F+VL+ ++ G+D+P + + I ADK G + L Q GR Sbjct: 1076 ERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGR 1131 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y +TP I + +R +E G G + D+ G Sbjct: 1132 VGRSHHQ---AYAYLLTPEY---ITKDAEKRLDAIAAADELG---AGFTLAMQDLEIRGA 1182 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + V + + L+Q + +L+ Sbjct: 1183 GEILGEGQSGEMIQ-------VGFTLYTEMLKQAVRDLKK 1215 >UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcus oceani RepID=Q3J811_NITOC Length = 431 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 110/404 (27%), Gaps = 46/404 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + + L L + Q L Q Sbjct: 52 QAQTGTGKTASFLLATMQCLLREPSAGAGQQPRG---LIVAPTRELALQVSKDAQFLGQY 108 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + G + + P L DY + V + + Sbjct: 109 TN-LKCVAVHGGANYRKQRHLLEQGCDILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADR 167 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M+ R + P + SAT +E + + Sbjct: 168 MFDLGFIRDIRYILRRLPPPD---------------KRLGMLFSATLSLRVMELAYEYMN 212 Query: 410 DQVVRPTGL----LDPIIEVRPV---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + +D I E ++ LL+ ++ + +V T TK +AE + Sbjct: 213 NPQLLRIEPQKVTVDKITERVYFPANEEKISLLLALFKRLVPRH--AIVFTNTKHVAEKV 270 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 YLE +G + L SD+ +R ++ + + +LV ++ GL + V+ V D Sbjct: 271 WGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDRIYPILVATDVAARGLHISTVTHVFNYD 330 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRR--------- 572 + + IGR AR +G A+ + + I E + Sbjct: 331 LP-----QDPEDYVHRIGRTARAGASGLAVSFACEDYAFSLPDIEEYIGHKVVPFSVEEE 385 Query: 573 ---EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 +Q+ H + + K G Sbjct: 386 ELLVPEQRVFVSHKDKKKSHRRAPHPRQKKKSFQKKETYSGGKN 429 >UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D232_PARTE Length = 434 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 108/326 (33%), Gaps = 17/326 (5%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 ++ N+ + + + + + ++ G G T Sbjct: 110 FTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQET-R 168 Query: 327 DYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + +++ I + R + E L + + + Sbjct: 169 EKCKQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPG 228 Query: 386 APQTIYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVATQVDDLLS 437 Q SAT +E S + D + + Q +L Sbjct: 229 DIQIALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLV 288 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ + + + ++ +K+ +DL + L G V +HS ++ ER +++++ + G Sbjct: 289 ELYKNLTV-SQSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAA 347 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV +L+ G+D+ ++SLV + F R + I +GRA R G AI + Sbjct: 348 RILVSTDLMGRGIDVQQLSLVINYE-----FPRLKEQYIHRVGRAGRYGRKGVAINMVAQ 402 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 ++ + + + + + Sbjct: 403 QEANLLLEVEKYYNTKIDEMPKDLAE 428 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 94/308 (30%), Gaps = 34/308 (11%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 +LL++ + + M G + + P L D+L L+ Sbjct: 84 AKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKNPEIIIATPGRLIDHLKQKKDLM 143 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE--ALAPQTIYVSA 394 D + + + M + L PQT+ SA Sbjct: 144 EDVEYFILDEADRMLDM-----------------GFEEDVLTIANACSGKAKPQTLLFSA 186 Query: 395 TPGNY-ELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 T D ++ + +L+ + Sbjct: 187 TLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLLSN-EEY 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ T TK E +L H V YLH D+ ER ++ +R G F VLV ++ Sbjct: 246 RQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVATDVA 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAI 565 GLD+ + LV D RS + IGR R +G AI D ++ AI Sbjct: 306 ARGLDIQSIDLVINFDM-----ARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAI 360 Query: 566 GETERRRE 573 R Sbjct: 361 ERYLRVNM 368 >UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=B7RTE5_9GAMM Length = 440 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 139/480 (28%), Gaps = 75/480 (15%) Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L L G+ + A+ Y + + ++ + PA + LRV Sbjct: 3 QQLELDRGLRLGLDALE-------YEKATEVQEQ-----------VIPAALEGTDLRVSA 44 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 + ++ P +I+S + LA E Sbjct: 45 ETGSGKTVAYLLPTLQRILS---------------------APINRKAGALAVVLVPTRE 83 Query: 277 NNKLLE--EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + ++ + L Q+TQ + + G + + P L ++ Sbjct: 84 LARQVQKNCRDLMQKTQLGAQAIT-GGADFKYQRALLRKNPELIIATPGRLLEHCEKGSA 142 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + + M + +K F Q I +SA Sbjct: 143 DLGSLQTLILDEADRMLDMG-----------------FRDDVMKLASFCGAERQVIMLSA 185 Query: 395 TPGNYELE-KSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 T + L + + D + + D LL + + Sbjct: 186 TLKHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDKGGF- 244 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 R LV + A+ L L HG R LH ++ T ER ++ R + D++ ++ Sbjct: 245 TRALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVA 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ ++ LV D ++G + GR R G AI + ++ +I Sbjct: 305 ARGLDVKDIDLVVNYDLPQKG-----DDYLHRTGRTGRAGATGLAISLVSGLEWNLMVSI 359 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 +++ G K + G ++K+ + Sbjct: 360 QRYLNLEFEKRSLPGLKARY-SGPKKTKGSGKSAGTKKKRSKSTADKSKTRARNQKSKGK 418 >UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT5_9PLAT Length = 634 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 104/369 (28%), Gaps = 37/369 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRER----IVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 F + + P + + + + L L E + Sbjct: 251 QTGSGKTAAFMLPILKTVLDPSKGPVLGVAADGKPAPRAIVVVPTHELAQQILFEGMKFA 310 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 T + G + P L ++ + + + + + + + Sbjct: 311 TGTS-VRVHLTHGGVNVRHDLMQLRSGVSVLVATPGRLLHFIRSGLISLSMCNFIVLDEA 369 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + LP Q + +SAT + + Sbjct: 370 DRLLDEGFEGEMREFLEHEDLPPR-------------ETRQVVMLSATFEDEVRDLGMSL 416 Query: 408 VVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER------VLVTTL 454 + D + G ++ I P + D LL ++ ++ ++V Sbjct: 417 LADPITVTVGVVGVPPGSINQEIIAVPNGDKHDKLLELLKTDIDNYKQNNVLKKIIVFVE 476 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 +R A+ + L L ++ +ER E + R G+ VLV + GLD+ Sbjct: 477 RRRTAQQVASALSMEEVPAVELQGELSQMERDESMHRFRYGDAFVLVATAIAARGLDIVG 536 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V V D + IGR R + G+A + D + + ++ + E Sbjct: 537 VDHVINYDLPSH-----IYEYVHRIGRTGRVGHLGRATSFFDSDSSNDSRIAPKLVEAFE 591 Query: 574 KQQKYNEEH 582 + Sbjct: 592 ATGVEVPDF 600 >UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001924143 Length = 597 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 102/318 (32%), Gaps = 32/318 (10%) Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG-DRAR 357 G + + P L D + L + ++ I + M Sbjct: 231 CGGTSVSHDVSQLGPYTKVVVSTPGRLIDLCERNLLSLAGIKYLVIDECDRMLDEFGMEE 290 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + + + T SAT + ++ V TG Sbjct: 291 QLRKIIALVTINK--------------NDIHTSLWSATLPASLERIARSATINPVYICTG 336 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + + LL +R+ V++ T +K A+ LTE+L Sbjct: 337 VEMSVPQNITQNVIFMHTYMKHKHLLETLRR--TPYPPVIIFTNSKAKADSLTEFLLAEQ 394 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +HSD +ER +++ D R FDVLV +L+ GLD+ V+ V D Sbjct: 395 FHVAAIHSDKTQLERNQVLSDFRENLFDVLVATDLMSRGLDIVTVTHVINFDTP-----D 449 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + I GR R G A + ++K + + + E + + G Sbjct: 450 TIEDYIHRCGRTGRFGRPGLATTFLTL-DCKISKELKDLLEASKSDIPI-ELNDLKNFGK 507 Query: 590 NKKVVDILALGQNIAKTK 607 V D+ + + K + Sbjct: 508 KILVTDMGDKEEMVVKRR 525 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 88/632 (13%), Positives = 193/632 (30%), Gaps = 89/632 (14%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + E ++ + + + + +A RP +VL N LA Q Y + F Sbjct: 16 KALEQIQKKKSPIAIS--STIQEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLS 73 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 E F + ++ + + + + ++ ++ + + +VV Sbjct: 74 EKECSLFGT-------------DESLRVEAIASSPELSAQQVDTLFSLQKHPNQIVVTCP 120 Query: 143 SAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 SA P + + +HL + + + +L Y + Q +F +RG ++D Sbjct: 121 SAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLLASGYHQQAHVDQPLSFAIRGGIVD 180 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ D +R+E FD ++E + FD + + TI I P + +I + Sbjct: 181 VYSINYD-HPIRLEFFDTQIESIRFFDENIQRTIGTIEEVEIVPASIVFFSFNQIGDIRK 239 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 I+++L V L++ + ++ M + + Y Sbjct: 240 GIQQDLERNPNVFLQDELMTT-----------IQAMEAHLFDKSMYPY------YAFVPN 282 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L+DY+ L + DE + I + D + +L D L + Sbjct: 283 MAGLWDYMEDAELFISDEI-LVNDAIKR-LKEDTISYIQEMAQENKLLPRFD---LWHDL 337 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ Y + G+ + ++ L E R Sbjct: 338 ERSMPASRCYYGDSYGDPVSHIEEVYLPNE------------------------LLEKRI 373 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + A +RV V L K+ + + E L+ R+L + L L E D Sbjct: 374 QIAQKQRVTVFVLNKKEIQRIREILDHEKIEYRFL-----KEKEEIEKEALYLYEAD--- 425 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +G + + + + GR I++ + Sbjct: 426 ----WSQGFFLADQEVAVYTARELFEV-------HHRKGRYENKFRNAEIIHAYQELEPK 474 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 +Y + + + I+ + + R V + Sbjct: 475 ----DYVVHANYGVGQYMGIETKEINHIKRDFLRIIYKANSELLVPLEQFRLVRKFVSRE 530 Query: 622 NV---PMDMSPKALQQKIHELEGLMMQHAQNL 650 + + ++ +L+ + + A L Sbjct: 531 GIVPKLNKLGSGDWEKTKTKLQKNVEEVATRL 562 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 57/430 (13%), Positives = 120/430 (27%), Gaps = 35/430 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + I+ A Q Sbjct: 607 KKDMESSKPMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNR 666 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + L + + + L + ++ +H + + Sbjct: 667 YKDFAV------RIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLL 720 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP L+ S V T Sbjct: 721 VIDEE--------HRFGVEHKEKIKELRNGVDVLALSATPIPRTLQMSLIGVRSLSQLET 772 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR- 474 L+ V + L+ I++ + +V + L++ R Sbjct: 773 PPLNRYSVQTYVVEKNQALIVDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARI 832 Query: 475 -YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H + E +I+ E D+LV ++ G+D+P V+ + I DA G + Sbjct: 833 GVVHGKLGRDEIEDIMWRFNHQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQI-- 890 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 Q GR R+ + Y + P+ K + E ++R + K + G G + Sbjct: 891 --YQMKGRVGRSNR---LAYAYLLIPNR-KQLSEVAQKRLQAVKEFAKLG---SGYKVAM 941 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ G ++ D V +D + L+ I + + + Sbjct: 942 RDLTIRGAGDLLGSSQSGF-------IDTVGIDFYIEMLEAAIEAKRNHQPIQKKEPKVK 994 Query: 654 EAAQIRDQLH 663 Q+ + Sbjct: 995 NNIQVSSYIP 1004 >UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacteria RepID=Q3BYG2_XANC5 Length = 453 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 61/374 (16%), Positives = 109/374 (29%), Gaps = 19/374 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L R + + ++L L + ++ L + + GE Sbjct: 85 PLLLQRLQAPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINP 144 Query: 325 LFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +V+ + + R + L E L + Sbjct: 145 QLMALRGGADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALL 204 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVR---PVATQVDDLLS 437 Q++ VSAT + + D + P I R A Q LL Sbjct: 205 PAQRQSVLVSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDAGQRTQLLR 264 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++LV ++ A+ + E L + G LH ++ R +R + + Sbjct: 265 HLLLEHGWP-QLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADV 323 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV +L G+D+ + V D RS IGR AR +G AI + Sbjct: 324 QVLVATDLAGRGIDIDALPAVLNYDLP-----RSTVDYTHRIGRTARAGASGVAISFVTA 378 Query: 557 ITPSMAKAIGETERRR-----EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + I + + R + + P V I + + Sbjct: 379 DSAQQWRLIEKRQGLRVPTSVIEGFEPTPVQAPAPDHAPGAAVRAADDNGGIKGKRPSKK 438 Query: 612 GKSRPIVEPDNVPM 625 K R + Sbjct: 439 DKLRAAAQAQAGKP 452 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 84/626 (13%), Positives = 179/626 (28%), Gaps = 80/626 (12%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS + A+ Q +V+A + Y +K + + + F + Sbjct: 24 LYGSADALALIE-FANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDN-------- 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 + S + I RL + + +V+ ++ +++ P + K Sbjct: 75 -----WEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSHLCPLEFSKKYS 129 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L++ + I+ +L ++ Y + G F +R +ID++P + A R+ LF+ Sbjct: 130 LNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT-KTAYRINLFN 188 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++VE + F+ T + + IP T+ P + T I K+ Sbjct: 189 QKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKKIFNDN-------- 240 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 F ++E GIE Y TLFDYL + ++ Sbjct: 241 ------------GFIYTEVSEGRLPGGIEFYLPLF-----FHTTNTLFDYLADNTII--A 281 Query: 339 ESHVTIPQIGGMYRGDRARKET----LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 S + Y R R E L + ++ L F E + + I S Sbjct: 282 TSKEFSNLVDKTYNEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSK 341 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + V +P+ + + + N+++L+ Sbjct: 342 LENKKQHFNFNSSLPPPVRIELQTNNPLSKFSTFVKRFTNK---------QNKKILIVCE 392 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + L++ L H + + + + + L GL + Sbjct: 393 SLDRQNVLSDLLINHNLNTYSV----------KSWHEFTTSSKSLNIIHEDLIHGLLIHN 442 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + I + D G ++ T + + + AI Sbjct: 443 I--AIITEEDLFGQEVVQQQRRHT------KHKYFDVAIKSLVEIKIGDAI---VHENYG 491 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP---MDMSPKA 631 +Y ++ + + + Sbjct: 492 VGRYLGLKTKIFDKQSQDFLVLKYANNAKLMVPIISFNLISRYAGISLKSTPLHKLGTNQ 551 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + A L A + Sbjct: 552 WAKAKKKAGEALFDIAVELLKISAKR 577 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/398 (13%), Positives = 120/398 (30%), Gaps = 35/398 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q + ++ Sbjct: 623 PMDRLVCGDVGFGKTEIAMRAAFLAVKAGKQVAILVPTTLLSNQHYRSFIDRFTNDPT-- 680 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + + L + ++ +H I + Sbjct: 681 ----KIATLSRFQTPKEQKIIIEQLKQGTIDIIIGTHKIIQNNIKYKNLSLIIIDEE--- 733 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 + + + + ++ATP L + G + + + T I Sbjct: 734 -----HRFGVKQKEALKKLRGQSDILTMTATPIPRTLNMALGSLRELSIIATPPAKRSTI 788 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + D++ I + +V + +++ E L++ ++R H I Sbjct: 789 QTFVQEWHNDNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQIIPKLQIRIAHGKIP 848 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T E +I+ D F +LV ++ G+D+P + + I +A G + L Q GR Sbjct: 849 TRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTIIINNAQNFGLAQ----LHQLRGR 904 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y I S ++ +T + R K E G G D+ G Sbjct: 905 VGRSHHR---AYAYLIVKSHL-SLSKTAKDRLDVIKSLTELG---SGFMLANHDLEIRGA 957 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + + ++ L++ I + Sbjct: 958 GDLLGDNQSG-------QISEIGFNLYHDLLKRTIDAV 988 >UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6Y6_9GAMM Length = 402 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 97/326 (29%), Gaps = 18/326 (5%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 L + + +L + L + ++ + + ++ G+ Sbjct: 54 AFVLPLLQKLLDEPNHGRLPKALILAPTRELAFQI--QHVIHHLGKANQPHIAMVTGGQA 111 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P YL +V+ + + + E L Sbjct: 112 PTAQLAYLENGCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVL 171 Query: 381 EFEALAPQTIYVSAT-PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-------ATQV 432 A QT SAT G+ + + + + + Sbjct: 172 ATITTAFQTSLFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHK 231 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LL+ + + E L+ K AE+++ +L+ + +H D + +R E R Sbjct: 232 QALLAAVIK-QTDCESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKF 290 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R G+ LV ++ GLD+P+VS V D G I +GR R G A+ Sbjct: 291 RQGKVKALVATDVAARGLDLPQVSHVINYDVPFRG-----DIYIHRVGRTGRAGQTGTAV 345 Query: 552 LYGDKITPSMAKAIGETERRREKQQK 577 + + + + K Sbjct: 346 NLVEPHDHKNLQRVEHHIGQPLPVLK 371 >UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09E47_STIAU Length = 494 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 144/378 (38%), Gaps = 48/378 (12%) Query: 1 MSKPFK-------LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI 53 M PF L A P+GD RL E L+ G +T G+ G+ + +A + Sbjct: 38 MDTPFSQTAGSEALRGAVPPTGD---PFARLLERLQPGHRART-QGLHGAARGHVLARLS 93 Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 L+ P + +A ++ A L G++ F N +P+ + + Sbjct: 94 RTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAP-------RVLRLPADEVLPYDEL 146 Query: 114 SVNEHIEQMRLSATKAMLER-RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRA 171 S HI RL + + R +V S+ A+ P + LT G ID+ Sbjct: 147 SPEPHIVSERLGTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDT 206 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 + R+L + Y + GTF VRG ++D+F + +R+E F + +E + LF+P Sbjct: 207 LARQLVLMGYQSSPLVEDPGTFSVRGGILDVFSPLYER-PVRLEFFGDTIESIRLFEPDN 265 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V ++ ++ P + + + A + ++ L +L +R Sbjct: 266 QRTVDSLKEVSLVPARELLLTDQTRAK---------AEATARAVADHINLPTIKLRER-- 314 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP----------ADGLLVVDESH 341 L+ + E G+E G T+FDYL D + + + Sbjct: 315 --LDALREGLPGFGLEGLLPGFFEGGLA----TVFDYLRLWAREPVFYFDDPVGLERAAT 368 Query: 342 VTIPQIGGMYRGDRARKE 359 ++ ++ AR++ Sbjct: 369 DLWEELERSHQEADARQD 386 >UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergistaceae RepID=C1TPC6_9BACT Length = 605 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 98/334 (29%), Gaps = 19/334 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + G + G L LVV T+ Sbjct: 111 LVLSPTRELAQQIAGEAEWIGKYMGI-TTASLVGGMDMERQIKDLRRGSALVVGTPGRTM 169 Query: 345 PQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 I + D + L E L + +T SAT + Sbjct: 170 DHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWLFSATMPDEVASL 229 Query: 404 SGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + + + P +++ L++ + E L+ TK Sbjct: 230 TKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWE--NPEMGLIFCHTK 287 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + E L+E G LH D+ +ER ++ R G LV N+ GLD+ VS Sbjct: 288 AGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVAARGLDVQGVS 347 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 V G + + + GR R G+ IL KA+ K Sbjct: 348 HVIQ-----IGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASSMDLKW 402 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + I + + + LG + + + Sbjct: 403 ANVPDVAEIAKA--QRGLRESALLGGDEPDQEIQ 434 >UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLD4_FIBSS Length = 463 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 45/338 (13%), Positives = 87/338 (25%), Gaps = 19/338 (5%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + +++ E S G L + ++V Sbjct: 99 PQALILVPTRELCIQVQEEFEKLSKGTGIKS--VAIFGGVSYEPQIKALRSGVHVIVATP 156 Query: 341 HVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + I R L E L K ++ A SAT Sbjct: 157 GRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCTMYSATIPQT 216 Query: 400 ELEKSGGDVV--------DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + L+ V + + + E ++ Sbjct: 217 VKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVL--EYYNPESCMI 274 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 KR L + L +G V L D+ R + + R + +L+ ++ G+D Sbjct: 275 FCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGID 334 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + V+ V + D + GR AR G I + + Sbjct: 335 VDHVTHVIVYDHP-----ADHEVYVHRSGRTARAGRSGLCISLITPVEEIDLRQTAVDFG 389 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + I + + V + + ++ KA Sbjct: 390 INFIKMDPLTNEEIAKKVSERTKVRLEEVRKHFGGQKA 427 >UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2E9Y0_TRIVA Length = 536 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 105/357 (29%), Gaps = 31/357 (8%) Query: 223 RLSLFDPL--TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + +D + + + P +Y+ ++ L+ E Sbjct: 174 SIDSYDIIGLSQPGTGKT-LAYVIPLLYYILEYKKNHPETNNFSIPLSVVLVPTHELAVQ 232 Query: 281 LEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++E + + P L D + A + V Sbjct: 233 VQEVIDKLGINLGIKSRTLTGSFRLNDQALELSHENHVIVATPGRLKDAIEAHLVSVKKV 292 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + + SAT + Sbjct: 293 FFIVMDEADKMVDKSLGPQI-----------------SFILNECPKEKHLMMFSATMPHE 335 Query: 400 ELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 L V G + + I +V Q D L ++ + ++V T T Sbjct: 336 VLSIVEEFFTKVVTVSVGEIGGASENIKQVVHYCRQADRLGLLLKSLRGMKAPIIVFTNT 395 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + E ++ +G R ++H ER I+ ++ FDVLV +++ G+D+P V Sbjct: 396 RDSCEKSAMEIQNNGFRSAFIHGGKSQKERDSIVEGIQNNLFDVLVATDVISRGIDIPNV 455 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 V L+ R+ + + IGR R G A + K + + RR Sbjct: 456 ENVVNLELP-----RNIHTYVHRIGRTGRNGKEGIATSFVTKDDKEIMYDLAAMLRR 507 >UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIE5_9CRYT Length = 498 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 100/319 (31%), Gaps = 27/319 (8%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + E + L + E SR P Sbjct: 178 LILSPTRELAQQIVREVKVLLDTRAKKY-RCRYICGKVKKEQESRTKRLDIAVSTPFRFA 236 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + + + + + S + + ++ + + + + + S Sbjct: 237 EICKSGIMNLKECSFIVLDEVDKLLDMGFSPQIDEIIAHSNVIS-------------NGK 283 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQR 442 Q + SAT N + + + + G I + T+ L RQ Sbjct: 284 VQVVAFSATLPNNVKDLAESIMKYPIEVTVGHRLAASKTIKQELICVTKESGKLESFRQL 343 Query: 443 AAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 VL+ T +K A+ L + V +HSD+ +R I++ R G+ V Sbjct: 344 IKQGRINLPVLLFTNSKENAQKLFSKIVFDNLLVDMIHSDMAKTKRDNIVKKFRTGQIWV 403 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +L+ G+D V+ V D F ++ I IGR+ R G A+ + Sbjct: 404 LICTDLIARGVDFKNVATVINYD-----FPQTSTIYIHRIGRSGRAGRLGHALTFFTLND 458 Query: 559 PSMAKAIGETERRREKQQK 577 K I + + + Sbjct: 459 LPKLKYIAKVMKSSGIEVP 477 >UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=Dugesia dorotocephala RepID=Q9GV07_9TURB Length = 573 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 108/369 (29%), Gaps = 29/369 (7%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHY---VTPRERIVQAMEEIKEELAARRKVLLEN 277 ++R F I V + + L L Sbjct: 147 IDRGRDLMACAQTGSGKTAAFLIPIIKGLHGTVLETDSSNTSSTAFPRALIMTPTRELCR 206 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + L + + M + + P L +L + + Sbjct: 207 QIFTAARLLCRGSNIRCAYMYGGIEMNKSRRNIQATGCDILVATPGRLIHFLELVWVSLR 266 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + M + + Y S + SAT Sbjct: 267 YIKYFVLDEADRMLDEEGFYEVVNKIYKEAHQSG----------DADRSIHLSMFSATFP 316 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 N + + + + G + I +V + I+ +E+ L Sbjct: 317 NEIQTLASRLLSNYLFLAVGVVGSANCDVKQEIIRAEQRDKVTSAIELIKTI--PDEKTL 374 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + +KRMA+ L G + +H D + +R + D + G + +V N+ GL Sbjct: 375 IFVESKRMADFFGIKLGYLGFKATTIHGDREQEQRESALNDFKSGRINFMVATNVAARGL 434 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG-DKITPSMAKAIGET 568 D+P+V V +D + + + IGR R G+AI + D+ +A A+ Sbjct: 435 DIPKVDNVINIDMP-----DTIDTYVHRIGRTGRCGNVGRAISFFDDQKDLGLAGALVGK 489 Query: 569 ERRREKQQK 577 + + + Sbjct: 490 LQEANQPVE 498 >UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus torridus RepID=Q6KZC2_PICTO Length = 387 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 63/395 (15%), Positives = 120/395 (30%), Gaps = 42/395 (10%) Query: 213 RVELF-DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R+ + EV+ L++ + L+G+ + + I +A+ Sbjct: 21 RMGFYEPTEVQGLAIPEILSGR--DVVIKSMTGSGKTAAFLIPAIQRALGSKFFNTVLII 78 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E L F + G + + + P + D + Sbjct: 79 LPTRELALQTYSVALNISRNFFRTTVVYGGSSMEKQIHDL-RDSKIIIGTPGRIIDLINR 137 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 D L + + + M + K E Q + Sbjct: 138 DLLNLEHVGMFILDEADMMLDMG-----------------FIDDIYKIIENLPEKRQNVL 180 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL------LDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + D + + + P + LLS I + Sbjct: 181 ASATMPERLDDMIKNLMNDPELIAVSNGYTPKTIVHDYTIIPEHKKFSALLSYIDE--NR 238 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + ++ TK A L+E L + G + LH D+ R I+ R +++ N+ Sbjct: 239 DMKRIIFVRTKHGAVVLSEILNKCGFKNVTLHGDMRQRSREISIKRFRNYRSGIMIATNV 298 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+P+V + DA + +S GR+ R G A+ + +M Sbjct: 299 AARGIDIPDVDEIINFDAPID----DIKSYSHRAGRSGRFGRPGHALTIFTEKQKNMINE 354 Query: 565 IG--ETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 I + K K N+ + N DI+ Sbjct: 355 IEMKNNVKMDHKIIKINDVY------YNIDYRDII 383 >UniRef50_C4QDH8 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QDH8_SCHMA Length = 612 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/437 (13%), Positives = 115/437 (26%), Gaps = 77/437 (17%) Query: 171 AILRRLAELQ-YARNDQAFQRGTFRVRGEVIDIFPAE-SDDIALRVELFDEEVERLSLFD 228 +L L + + V+ I I + + + ++++ ++ + ++ Sbjct: 114 KLLNNLQAMGLFELTP---------VQKHAIGILSLDEYEKVDVKIDESNQSTDDNPPYE 164 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 +TG+ + + + E + + L Sbjct: 165 RVTGK-FDLMAAAQTGSGKTLAYLIPTFNRLLRVYPFEAMQSLLISRTLRQYPSSVILVP 223 Query: 289 RT---QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 F + G + + P L D+L D + + + + Sbjct: 224 LLCNQTFVRPVGVFGGERPERQMFELNKGCHFIVATPGRLLDFLKRDCISLKFCRSLILD 283 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M + + + QT SAT + Sbjct: 284 EADRMLDMGFEEQIRQILESPKFQMPPP---------TGNCRQTALFSATYPREVTLLAK 334 Query: 406 GDVVDQVVR---------PTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINERV---- 449 + TG + P + D L I + +V Sbjct: 335 DFLRGPNCISLTLSSAESNTGTIVPTWGKAIRNKKEDEFDRLTRIIPKEINQQFQVVVGN 394 Query: 450 -------------------------------LVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 LV TKR + + YL +G R +H Sbjct: 395 PETAVPNHLLQLILEMNSKSLDLCGESVCRVLVFCNTKREVDQIDNYLYSNGVRSTSIHG 454 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D + R + + R G +VL+ ++ G+D+P V V G + Sbjct: 455 DKNQYSRAKSLDLFRKGTANVLIASSVAARGIDIPNVFAVIN-----IGLPNELDDYVHR 509 Query: 539 IGRAAR-NVNGKAILYG 554 IGR R +G+AI Sbjct: 510 IGRTGRMGKSGEAITLI 526 >UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12UP5_METBU Length = 522 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 105/373 (28%), Gaps = 38/373 (10%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 I+Q +E+ A E + ++ L + G + + Sbjct: 59 GIIQKIEKGNGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER 118 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + D + + + M + Sbjct: 119 ADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFI-----------------D 161 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV------RPTGLLDPIIEVRPV 428 + + QT+ SAT S + + + L + P Sbjct: 162 DVEEIIDECPSDRQTMMFSATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKLKQVYIDVPK 221 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L+ ++ + V+V T+ + + + L ++ +H +R Sbjct: 222 KMKFSLLVHLLKSEKS--GLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKST 279 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + LV ++ GLD+P VS V D + IGR AR Sbjct: 280 LSKFHSSNAHALVCTDVAARGLDIPHVSHVYNFDIP-----DDPSEYVHRIGRTARAGRE 334 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 GK I + + + R K ++ + + ++ G + + Sbjct: 335 GKVINVVADVDKGGFTRLSK-MHRNFKIEREDLPE------FERVLIKSEDSGGRPTRGR 387 Query: 608 AKGRGKSRPIVEP 620 + R R Sbjct: 388 REDRKGGRREDRK 400 >UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micromonas RepID=C1FEE6_9CHLO Length = 484 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 61/397 (15%), Positives = 103/397 (25%), Gaps = 44/397 (11%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + I ELA+ ++ E+ Sbjct: 113 QTGTGKTAAFALPILQILGREPYGIFCLCLTPTRELAS---------QISEQFIAFSAGM 163 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G + + L P L D+ + Sbjct: 164 TLRCETVFGGENIRTQAKALMLRPHIAVATPGRLMDHFLHCSAVAKCFE----------- 212 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYE-----LEKSG 405 R L E L + QT+ SAT L Sbjct: 213 ---NVRCLVLDEADRLLDPGFEAELQAIMHNLPSANRQTLMFSATITKSISAVQELALGK 269 Query: 406 GDVVDQVVRP--TGLLDPIIEVRPVATQVDDLLSEIRQRAAINER-VLVTTLTKRMAEDL 462 + + + G + L+ +++ R ++V T R + L Sbjct: 270 ALLFEALKDTQLAGRCKEEYCFIAPRVKEVYLVHILKRAPTWGTRSMIVFAGTVRKCQML 329 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E L G LH+ R + + GE +++ ++ GLD+P V +V D Sbjct: 330 KEILSVLGINCVALHAAKKQARRHASLSRFKSGEIQIMIATDIASRGLDIPTVDMVVNYD 389 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 R I IGR AR G+AI + S+ I + R+ + E Sbjct: 390 VPLI-----PRDYIHRIGRTARAGRVGRAITLVTQHDISLVHQIEQLTCRKLVELSKLSE 444 Query: 582 HGITPQ------GLNKKVVDILALGQNIAKTKAKGRG 612 I +++ A G + K Sbjct: 445 EAILKDMAQVFAARRIANLNMGAAGGFNEILRQKRSK 481 >UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=A6VVZ5_MARMS Length = 448 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 109/354 (30%), Gaps = 32/354 (9%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ + RL ++ + G ++ S P L D+L + + Sbjct: 86 AKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSLQKDPHFIVATPGRLVDHLKQRHVFL 145 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + M A + QT++ SAT Sbjct: 146 EGLELLVLDEADRMLDLGFADAMRAIN----------------SAASHRQRQTLFFSATL 189 Query: 397 GN-YELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 N E +G + + G + + + + LL + I ++ Sbjct: 190 DNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKHLLVGQTI-KQ 248 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V T TK L+E + G + L+ ++ R + + G+FDVLV ++ Sbjct: 249 AIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDVLVSTDVASR 308 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 GLD+ VS V D + + GR R G A KAI Sbjct: 309 GLDIASVSHVFNFDLP-----KQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKAIEV 363 Query: 568 TERRREKQQKYNEEHGITPQGL-NKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 ++ + L K G A TKA + +P+ + Sbjct: 364 FLQKTFTTESIEGLEAKFKGLLPPKPARQETKKGSTKAPTKASKKTNKKPVGKA 417 >UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP Length = 401 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 62/428 (14%), Positives = 130/428 (30%), Gaps = 66/428 (15%) Query: 162 TVGMIIDQ---RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 +G D + IL+ + + + + Q+G I P + Sbjct: 20 KIGEFSDMGLKKEILQGIFKYGFEKPSLIQQKG----------ILPIIHKKDLI------ 63 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 F I + ++ + ELA + K++ E+ Sbjct: 64 ----------AQAQSGTGKTATFVIGTLQNVQYDVFQVQCMVVCPSRELANQIKIVYESI 113 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + R + P LFD L + LL Sbjct: 114 GKFTKIRT--------QECIGGTKIKDDRQLLFSKKPHIIIGTPGRLFDILSIEKLLSQK 165 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ I + M+ + + ++ + SAT Sbjct: 166 LEYLVIDEADEMF-----------------SRGFKVQIFRIFKYLPKECKIGLFSATLPK 208 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQVDDLLSEIRQRAA--INERVLVT 452 L+ + D V + +E + + L + E+ ++ Sbjct: 209 EILQVIELFISDPVRILVKKEELTLEGIKQFYIPIEKEEWKLEALFDIYRSIKAEQSIIY 268 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 ++ E L ++ + + ++H +++ ER E +++ R G+F VL+ +LL G+D+ Sbjct: 269 VNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFRFGKFRVLITTDLLSRGIDI 328 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 +V+ V D + + S I IGR+ R G AI + ++ + I Sbjct: 329 EKVNFVINYDLPQY-----KESYIHRIGRSGRFGKKGVAINFLSRVDVDNLREIEAYYST 383 Query: 572 REKQQKYN 579 + Sbjct: 384 VIALIPED 391 >UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia japonica RepID=A4V6K8_DUGJA Length = 515 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 47/393 (11%), Positives = 99/393 (25%), Gaps = 49/393 (12%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 FD L Q++ + + M+ EE+ K E + Sbjct: 122 HTFDILNRQLIDILGSAETGSGKTIAYLAPLLNNIMKHYPEEMMNELKQNDEELQYPLLL 181 Query: 285 RLTQRTQFDLEMMNE----------------LGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + ++ + G + + P L D Sbjct: 182 VLAPTRELVNQITSVAKTLLKLTHLRSVSVIGGVDARSQINDASRGCHALIATPGRLKDL 241 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + I + M + + Sbjct: 242 TDRGIFSLKYCNKLVIDEADRMLDMGFEPQIREIINNLP---------------SVSKRH 286 Query: 389 TIYVSATPGNYELEKSGGDVV-DQVVRPTGL---------LDPIIEVRPVATQVDDLLSE 438 T SAT + + + + G D I + + + Sbjct: 287 TSMFSATFPKSVMSLASKLMKPNFGEITVGKNSGTNEACIPDSIEQEFILTESDSIFRNC 346 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 N++ +V K + + + + LH D+ +R + Sbjct: 347 FDFLQNNNKKTIVFCNKKMDVDIFYRFSTKKNITIAKLHGDLTQRQRDYEFDLFKNNRTQ 406 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ G+D+ ++ V G + I +GR R GK+I + D+ Sbjct: 407 ILVATSVAARGIDVSDIECVIN-----LGLPVNLDDYIHRVGRCGRMGRPGKSITFVDQF 461 Query: 558 TPSM--AKAIGETERRREKQQKYNEEHGITPQG 588 PS+ + + K+ Sbjct: 462 NPSISTLNDVRRMLEKTGKKVPEFMVEMNKNDR 494 >UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site n=1 Tax=Pichia pastoris GS115 RepID=C4R2K9_PICPG Length = 555 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 104/336 (30%), Gaps = 24/336 (7%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN-YSRFLSGRGPGEPPPTLFDYL 329 E +E++ + DL +++ +G S EN S P L D Sbjct: 236 LVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENVNSISRGCEIVVATPGRLLDCY 295 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + +V + + M + + F + T Sbjct: 296 ERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPTDQNR---------FTSRPRNT 346 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDLLSEIRQRAA 444 +AT + + + G L ++ EVR + L + Sbjct: 347 FMFTATMSTAIQKITKNYLNQPGTLTVGELGTVVDTVTQEVRYFPNENAKLNHLFSILPS 406 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +++ K+ E L L ++ +H + +R I++LR G+ DVL+ Sbjct: 407 FRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQRELAIQNLRSGKIDVLIAT 466 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 +L G+D+P VSLV S IGR R G +I Y + Sbjct: 467 DLAGRGIDIPNVSLVVN-----FQMANGLDSYTHRIGRTGRAGNRGYSITYLGPEDSEIF 521 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + + + + +I Sbjct: 522 SEFRKLLVKSGSKIPAELRQHDMNE--KRNMRNIEL 555 >UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D361_PARTE Length = 813 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 108/322 (33%), Gaps = 43/322 (13%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSG---------IENYSRFLSGRGPGEPPPTL 325 L + L +Q +Q F G E+ ++ P L Sbjct: 508 LAPTRELAQQIQSQYELFTRTCCVYGGVFKNLQYSEILGIKESRNKINLPSVIISTPGRL 567 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + L E L +++ + Sbjct: 568 LDFMKDG------------------LPLNSITQVVLDEADRMLDMGFEDQITQILSAVRD 609 Query: 386 APQTIYVSATPGNYELEKSGGDVV-DQVVRPTG------LLDPIIEVRPVATQVDDLLSE 438 QT++ SAT N + D ++ G + EV V + +E Sbjct: 610 DRQTLFFSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKFAE 669 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + R +++L+ K + L L HG + RYLH D+ ER +I+ + + G + Sbjct: 670 LTDRLK-GQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAIN 728 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 L+ NL GLD+ +V +V D F + I IGR R G+AI + Sbjct: 729 CLITTNLASRGLDVSDVDVVINYD-----FPDTIEDYIHRIGRTGRAGKKGQAISLLEPA 783 Query: 558 --TPSMAKAIGETERRREKQQK 577 + + + ++ ++ Sbjct: 784 FFNNRLKNDLVQVLQQSDQVIP 805 >UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein n=108 Tax=Proteobacteria RepID=A1S988_SHEAM Length = 613 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 103/358 (28%), Gaps = 37/358 (10%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 F + H + + L L + L + Sbjct: 47 TGTGKTASFLLPALQHLIDFP----RRRPGQPRVLVLTPTRELASQIHRYASHLATNLEL 102 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 D+ + G G + + P L +YL + I + M Sbjct: 103 DI-KLITGGVPYGPQEEMLKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLD 161 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-PGNYELEKSGGDVVDQ 411 + Q + SAT G + + + Sbjct: 162 M-----------------GFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEP 204 Query: 412 VVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + + I + LL+ + + +R +V T+ + L Sbjct: 205 MFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLK-QEEVKRAIVFCKTRDVVASLEG 263 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L++ G ++ D+D +R + + GE +VL+ ++ G+D+ +++ V D Sbjct: 264 QLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINFDMP 323 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 RS + + IGR R G AI + + + + K++ E Sbjct: 324 -----RSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVERYIEQPLKRRVIEEL 376 >UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Campylobacterales RepID=D1AZN5_SULD5 Length = 407 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 99/334 (29%), Gaps = 16/334 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L E + LT + +++ S + + GE Sbjct: 58 LENWSAQTHEGKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQL 117 Query: 327 DYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + +VV S + R L E L + E Sbjct: 118 LEIQKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQ 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDD---LLSEI 439 Q + SAT + + I R + ++ LL E+ Sbjct: 178 KRQNLLFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLREL 237 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + VLV KR A+++ +H H D+ +R ++ + + V Sbjct: 238 LRE-NDWDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRV 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L ++ GLD+ +VS V D RS I IGR R G AI D Sbjct: 297 LFATDIASRGLDIDDVSCVINFDLP-----RSSEDYIHRIGRTGRAGKEGLAISLIDHED 351 Query: 559 PSMAKAIGE--TERRREKQQKYNEEHGITPQGLN 590 + I + + ++Q K E G Q Sbjct: 352 KAHFALIEKRCALKLTKEQIKGFELVGEAIQKEK 385 >UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSK1_PHATR Length = 595 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 98/365 (26%), Gaps = 21/365 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 L + ++ + Y + G L +V I Sbjct: 45 ILAPARELAYQIHVVCKNMAKPLGYKS--TAVYGGAGVAEQIADLKRGTHIVTATPGRLI 102 Query: 345 P----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 Q G + R + E + QT+ SAT Sbjct: 103 DILTMQSGKILSLQRVTYVVMDEADRMYDMGFAPQISAILAAVRPDRQTVLFSATFPKAV 162 Query: 401 LEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + V G + E + LL + ++ ++V+V Sbjct: 163 ESLARKSLQYPVEVMVGGRSVASDSVTQYAERVEEDEKFLRLLQVLGEQVEGTKKVIVFV 222 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF-DVLVGINLLREGLDM 512 T+ A++L E L +G LH + +R I D + + +VLV + GLD+ Sbjct: 223 DTQVRADNLFEQLLRNGYSTLSLHGGKEQEDRDSTISDFKRKDGPNVLVATGVAGRGLDV 282 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP-SMAKAIGETER 570 + V A + + +GR R G A + A + Sbjct: 283 GSCTCVINFSAPNH-----LEAYVHQVGRTGRAGNRGVAYTFVSSTDEAKFAPNVVRAMS 337 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + + E KV A S + E + + Sbjct: 338 EAGQGDNISPELRQLSDEFQAKVEKGEARYAGSGFKGKGYTYDSTELSEAQKMARLEKRQ 397 Query: 631 ALQQK 635 AL + Sbjct: 398 ALLEA 402 >UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bacteria RepID=Q11TW3_CYTH3 Length = 388 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 54/348 (15%), Positives = 101/348 (29%), Gaps = 34/348 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + T + + L L Q + Sbjct: 54 QTGSGKTASFVLPILQMLQTKPLGKNRHI----NALVLVPTRELAVQVGQVFQAFSNALP 109 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ + G S + P L D + + + + D + + + M Sbjct: 110 NKIKSLAVYGGVSINPQMIQLQGVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKML 169 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + Q + SAT G + + D Sbjct: 170 NLG-----------------FKEEMANIFKLLPQKRQNLLFSATLGKDVDTITEFLLHDP 212 Query: 412 VVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 V + I+ + LL + + +N +VL+ T + A+ + E Sbjct: 213 VKIEIIAEEQNIDLIQQIAYAVEDARKGPLLRYLIKEQKMN-QVLIFTSSVHRADAVVEK 271 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L+ + LHS R E ++ + G VLV +L+ G+D+P + V + Sbjct: 272 LKANNILAAALHSKKSQGARTEALKQFKAGNIHVLVATDLMSRGIDIPFLPFVINYELP- 330 Query: 526 EGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRR 572 RS + I IGR R +G AI + I + ++ Sbjct: 331 ----RSPKDYIHRIGRTGRAEASGVAINLISEEETHHFSVIQKKMGKK 374 >UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1DYF6_9CHLO Length = 442 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 59/398 (14%), Positives = 111/398 (27%), Gaps = 37/398 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E + + T+ + R+ + + Sbjct: 18 HKRTTPVQRECWPPACVGRDVLGIAPPGSGKTLAYLLPAVEFAMRDARDNPRKKRDPPGR 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY----SRFLSGRGPGEP 321 A E + + + + + G S E Sbjct: 78 PSALVIAPTRELTQQIASVCNKLKRAAPVRCVAVYGGASQSEQEDELAQPTSMATLVVGT 137 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L + L + + + + M A + + Sbjct: 138 PGRLLAVMGTGALGLERARLLVLDEADRMLALGFAEQLEQIRE----------------A 181 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDV-VDQVV---RPTG--LLDPIIEVRPVATQVDDL 435 QT+ SAT + + + G +D + V + L Sbjct: 182 LPRPGRQTLMFSATFPKGVRAVAKAWLAPKPAIGDGVAAGDLNVDQTVHVCAEHKKGRKL 241 Query: 436 LSEIRQRAAINER----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L I + + R VLV + + + L+ HGE+V LH ++ R + ++D Sbjct: 242 LKHITELRKNDGRSKSRVLVFANRIKTVNFVGDLLKRHGEKVCTLHGELKQERRDQALKD 301 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G+ VLV ++ GLD+ + V D S +GRA R G A Sbjct: 302 FKSGKSPVLVATDVAGRGLDITGLEHVVNWDMP-----GSVEQYTHRVGRAGRSGRKGAA 356 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + + + +A + RR G QG Sbjct: 357 LSFFTRNMAPIAPDLVRLL-RRGGHFVDPNLEGQIRQG 393 >UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAU7_KANKD Length = 458 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 91/329 (27%), Gaps = 33/329 (10%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + L L + LTQ TQ + G + Sbjct: 61 IIHNLLENPSRHTSTRVLILAPTRELARQIDKHARDLTQFTQ-IKTGLIIGGADYKYQQA 119 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P + ++ G + D ++ I + M+ Sbjct: 120 IFRDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMG--------------- 164 Query: 370 SALDNRPLKFEEFEALAPQTIYVSAT-PGNYELEKSGGDVVDQVVR-------PTGLLDP 421 + F QT+ SAT + + + ++ Sbjct: 165 --FTDDVQAIAGFCKSDRQTLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQ 222 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I + L + + +V TK + L + H LH DI Sbjct: 223 FIITADDLVHKEKLTQWLL-TNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDIS 281 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R ++ R + VL+ ++ G+D+ ++ LV D + I IGR Sbjct: 282 QSVRNHVMTQFRDSKIKVLIASDVAARGIDVKDIDLVINFDM-----AHNAEDYIHRIGR 336 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETE 569 AR GKA+ ++ I + Sbjct: 337 TARAGETGKAVSLISHREWNLMVTIEKAI 365 >UniRef50_C1B4T7 ATP-dependent RNA helicase n=15 Tax=Actinomycetales RepID=C1B4T7_RHOOB Length = 465 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 103/389 (26%), Gaps = 44/389 (11%) Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ-IVSTIPRFTIYPKTHYVTPRE 254 RG + FP ++ I D L G+ ++ P + + Sbjct: 31 RGGIAAPFPIQAATIP----------------DVLAGRDVLGRAPTGSGKTLAFGLPMLV 74 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM-NELGYCSGIENYSRFL 313 R+ A E +E L + G + + Sbjct: 75 RLKGAASRRGYPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSR 134 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D+L + + D + + + + M + T Sbjct: 135 GVDLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVT------------- 181 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVAT 430 + Q + SAT + + V T P + + Sbjct: 182 ----TILDKTPAGGQRLLFSATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLLYV 237 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 D S + + R L+ TK + + + L G LH R + Sbjct: 238 DRRDKYSVVAHIGSRPGRTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLA 297 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 G VLV ++ G+ + ++LV +D E + + GR AR +G Sbjct: 298 SFADGTTPVLVATDVAARGIHVDGITLVVHVDPPTE-----AKDYLHRAGRTARAGESGV 352 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKY 578 + + + + + Sbjct: 353 VVTLVTEDERAAVEKLTRQAGLDITATPV 381 >UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5K6D1_9ALVE Length = 733 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/407 (15%), Positives = 113/407 (27%), Gaps = 33/407 (8%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + + +LA R ++ L T+ + + Y G Sbjct: 251 LMPLIMHIIYHKEHADLADRPAPTKDHPACPFALVLCP-TRELAVQIEKTIYKLGKYIGI 309 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRL 368 + G D +VV I + M L E L Sbjct: 310 TSTTLAGGLSKYEQFKDLRKGTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRML 369 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------ 422 +N+ + QT+ SAT + + D V G Sbjct: 370 NMGFENQVRSLVQRVRPDRQTMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQA 429 Query: 423 --IEVRPVATQVDD-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGER 472 +V V + D L + + +VL+ K A +L + E Sbjct: 430 VTQDVVVVEEKDDKFNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLP 489 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH D D +RM+I+ D R + VLV ++ GLD+P V V D + Sbjct: 490 CEALHGDSDQNDRMKIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDM-----SNTL 544 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKIT--PSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + +GR R + G A + MA + E + ++ Sbjct: 545 TTHTHRLGRTGRAGHTGHATTLLVRKDNSAKMAAELVEFMEKSKQAVSSALMDFALEFPP 604 Query: 590 NKKVVDI------LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ +A + G ++ + K Sbjct: 605 FAAARELGHSAAKGLRRAAVAGGPQQRHGLGYSEARGTSMSSGVGKK 651 >UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa group RepID=Q7KK34_DROME Length = 641 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 124/431 (28%), Gaps = 26/431 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + T + M E L R ++L + Sbjct: 184 QASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGA 243 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 ++ +L + I+ + G L + +V+ I I Sbjct: 244 QVYQVTKQLCQFTTID-----VGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTP 298 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + D L E L + + QT+ SAT + + + Sbjct: 299 SFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLD 358 Query: 410 DQVVRPTGLLDP---------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + I + +L+ + ++ +V TK+ A Sbjct: 359 KPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLIC-RTFHDHCMVFVQTKKQAH 417 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L L G R LH ++ +R+E ++ + + DVL+ ++ GLD+ V V Sbjct: 418 RLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVIN 477 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + I +GR AR G ++ + + K I + K + Sbjct: 478 FVMPI-----TTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIP 532 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 E + K+ + QNI + R ++ + + + +++ Sbjct: 533 PE---IIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQTNERRGWFQ 589 Query: 640 EGLMMQHAQNL 650 + ++ Sbjct: 590 TKQQREAEKDR 600 >UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME Length = 782 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 124/431 (28%), Gaps = 26/431 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + T + M E L R ++L + Sbjct: 184 QASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGA 243 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 ++ +L + I+ + G L + +V+ I I Sbjct: 244 QVYQVTKQLCQFTTID-----VGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTP 298 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + D L E L + + QT+ SAT + + + Sbjct: 299 SFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLD 358 Query: 410 DQVVRPTGLLDP---------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + I + +L+ + ++ +V TK+ A Sbjct: 359 KPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLIC-RTFHDHCMVFVQTKKQAH 417 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L L G R LH ++ +R+E ++ + + DVL+ ++ GLD+ V V Sbjct: 418 RLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVIN 477 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + I +GR AR G ++ + + K I + K + Sbjct: 478 FVMPI-----TTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIP 532 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 E + K+ + QNI + R ++ + + + +++ Sbjct: 533 PE---IIEKYRNKLTSLEPEIQNILDEEQAERQLAKTEQQLSKTERKLLGQTNERRGWFQ 589 Query: 640 EGLMMQHAQNL 650 + ++ Sbjct: 590 TKQQREAEKDR 600 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 63/362 (17%), Positives = 116/362 (32%), Gaps = 47/362 (12%) Query: 2 SKPFKLNSAFKPSGDQPEA--IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP 59 L+ + D+P +R L + + + FT+A + +R Sbjct: 1 MSSKDLSGLLNAALDEPGLARVRELAAEGGPTAEQVHVT-APAAARPFTVAALAQA-ERT 58 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 + + +L + P+ +V A+ P+ +T + S Sbjct: 59 VLAVTATSREGEELTQSLAGLLPDGSV-------------AFYPAWETLPHERLSPRSDT 105 Query: 120 EQMRLSATKAMLERRD---VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRL 176 RL+ + + VVVA V ++ L + L VG D + L Sbjct: 106 VGKRLALLHRLAHPQGAPLRVVVAPVRSLLQPQLKGLGDLKPVRLAVGESTDLSDLAAEL 165 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 ++L YAR D +RG F VRG ++DIFP +D+ RVE F +E+E + F + + Sbjct: 166 SDLAYARVDLVEKRGEFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSFAVADQRSLD 224 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + E + E Sbjct: 225 KADTLFAPPCRELLLSP---------------------RVRERAAELGQQHPGLAELCEQ 263 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLF-DYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + + G+E+ L+ G LF +P ++V + + + Sbjct: 264 LAQGIPVEGMES----LTPALLGADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSE 319 Query: 356 AR 357 Sbjct: 320 EF 321 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 61/440 (13%), Positives = 120/440 (27%), Gaps = 38/440 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + +Q E Sbjct: 816 KSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVPTTLLASQHLNTFTER 875 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M++ + LS + L A + +V +H + Sbjct: 876 MSQFPVT------IKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTHRLLQTETRFKDLGLV 929 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + +SATP LE + + + T Sbjct: 930 IVDEE--------QRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIREMSTITT 981 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + V D + + IR+ + +V E L E R Sbjct: 982 PPEERHPVLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLREIVPEARV 1041 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + +I++D GEFDVLV ++ G+D+P + + + AD G + Sbjct: 1042 VVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLGLSQ--- 1098 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + I +A Y K + E R + E G G+ + Sbjct: 1099 --LHQIRGRVGRGRERAYAYFM---YPPEKPLTEQAHERLATVAQHTELG---AGMYVAM 1150 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH--AQNLE 651 D+ G + V D+ + + + +G + ++ Sbjct: 1151 KDLEIRGAGNLLGGEQSG-------HIAGVGFDLYVRMVGDAVRTFKGAKEEILTEVKID 1203 Query: 652 FEEAAQIR-DQLHQLRELFI 670 A I D + R Sbjct: 1204 LPVDAHIPYDYIPVERLRLE 1223 >UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S6M9_OSTLU Length = 755 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 61/417 (14%), Positives = 122/417 (29%), Gaps = 30/417 (7%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + +L L + +++ + L G Sbjct: 203 MLPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVL--VVGGLSA 260 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK--ETLVEYGFRLPSALDNRPLKFE 380 L +VV I + + L E L + Sbjct: 261 NVQAAALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIV 320 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---------Q 431 QT+ SAT + + + L + Q Sbjct: 321 RQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQ 380 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L I + ++ ++ + TK+ A L + + LH D+ +R+ + + Sbjct: 381 KEAFLMAIVS-RSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDE 439 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R G L+ ++ GLD+P V V DA ++ S + +GR AR G A Sbjct: 440 FRTGTVTHLIATDVAARGLDIPSVDAVISFDAP-----KTLASYLHRVGRTARAGKKGTA 494 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + ++ + K I +R K G +KK+ D+ I + Sbjct: 495 LTFMEESDRKLVKTIA----KRGANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTE 550 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 R + +E + + + E++ + E ++ +D L + Sbjct: 551 RQLQKAEMEANKASNIL------EHAAEIKSRPAKTWFQSERDKRNAQKDALKAMET 601 >UniRef50_D0L6I3 DEAD/DEAH box helicase domain protein n=5 Tax=Actinobacteridae RepID=D0L6I3_GORB4 Length = 491 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 50/380 (13%), Positives = 110/380 (28%), Gaps = 39/380 (10%) Query: 207 SDDIALRVELFDEEVERLSLF---DPLTGQIVS-TIPRFTIYPKTHYVTPRERIVQAMEE 262 ++ ++ + + +E + +G+ ++ +IP + + Sbjct: 23 TEAFPIQQDTLGDTLEGKDVLGRGKTGSGKTLAFSIPLVAGLAEMEVPRKPGAPTGLVLA 82 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 ELA + ++E R+T G + + P Sbjct: 83 PTRELATQIARVVEPLAEAVGLRVTTVF---------GGVKQTRQEQAFRRGVDIVVACP 133 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D + + + D I + M + Sbjct: 134 GRLDDLMRQGIVTLDDVEITVIDEADHMADLGFLP-----------------VVTRILAA 176 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEI 439 Q + SAT N + + + + + + + D + I Sbjct: 177 TPADGQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVFEVSPSDKAALI 236 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + A+ R ++ TK A+ L L E G LH ++ +R + G+ V Sbjct: 237 TELASGAGRRILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGDVRV 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+ + ++ LV +D E ++ + GR AR + G + Sbjct: 297 LVATDVAARGVHVDDIELVVHVDPPNE-----HKAYLHRSGRTARAGSAGDVVTVCLPDQ 351 Query: 559 PSMAKAIGETERRREKQQKY 578 ++ + Sbjct: 352 RRDVASLLRKAKISVAPMPV 371 >UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Lodderomyces elongisporus RepID=PRP5_LODEL Length = 994 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 52/394 (13%), Positives = 117/394 (29%), Gaps = 36/394 (9%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + L+ + L++ E+ S + + G L + Sbjct: 457 KPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLK--VCCCYGGSNIENQISELKRGVNV 514 Query: 336 VVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +V I + G + R L E + + K QT+ Sbjct: 515 IVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVL 574 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLL---------------DPIIEVRPVATQVDDLL 436 SAT + + + + + G + D + +++D+L Sbjct: 575 FSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHKIQKLEDIL 634 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S +VLV + A+ L L + +H D ++R IR+ + Sbjct: 635 SRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQIDRKHAIREFSDDQ 694 Query: 497 --FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 +VL+ ++ GLD+ + LV + + +GR R +G+AI + Sbjct: 695 SGINVLIATSIAARGLDVRNLDLVVNFEPPSH-----LEDYVHRVGRTGRAGKHGEAITF 749 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG----QNIAKTKAK 609 D + + + + + + KK+ K + Sbjct: 750 VDNTQEKEISILVKALK--MSSRAVDSKLQEIADKFMKKIESGEEKRSSGFGGKGLEKLQ 807 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 ++ ++ + ++ +L + Sbjct: 808 NVRETNMQLQKKMFGN-FKKEDGKKSHRDLSEQV 840 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 89/645 (13%), Positives = 197/645 (30%), Gaps = 78/645 (12%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 TL V + F +A + L + + ++ + L + P+ V Sbjct: 16 KKITLSPVIDGTEGFILAEIA-RLGLSLVYICSDERILINLKKILTLVVPDIRV------ 68 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE----RRDVVVVASVSAIY-G 147 P+ D S + ++ RLS ++ + ++V+ +VSA+ Sbjct: 69 -------IIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 + L + ID ++ +L + R + ++ G + VRG ++D++ + Sbjct: 122 SVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEP-T 180 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +R++ F ++ L LFD T + + I F I + + + I + E Sbjct: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + +++ G+E++ F + T+F Sbjct: 241 GTTTQE-----------------DPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFP 278 Query: 328 YLPADGLLVVD--------ESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 YL ++ S + + Y D+ + + Sbjct: 279 YLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFD 338 Query: 378 KFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + Q + N + + V ++ + + D Sbjct: 339 ALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQ-DNWESGGRFDKF 397 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 LS + Q+A + +++ ++ + L +E HG + EI L+ Sbjct: 398 LSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI-----KKINTLTEINSLLKEE 452 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 V++ + +G + ++ + + D G I R R N A + D Sbjct: 453 IAAVIL---PINQGFETK--HMILVTETDLLGKK------IAR--RVVRKKNVHAQSFFD 499 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 I E ++ + I G +++ + Sbjct: 500 SSNIEEGAIIVHAEH---GIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLIS 556 Query: 616 PIV-EPDNVPMD-MSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 E V +D + A + + L+ + AQ L A + Sbjct: 557 RYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRA 601 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/401 (10%), Positives = 114/401 (28%), Gaps = 35/401 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + ++ A L + Q + E G Sbjct: 647 MDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQ------G 700 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +S + + + +V +H + + Sbjct: 701 FSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEE---- 756 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + +SATP L+ + V + + ++ I Sbjct: 757 ----QHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACR 812 Query: 426 RPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDT 482 ++ ++ E + + + E +L+ ++ H + Sbjct: 813 TSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSP 872 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 + + G++DVL+ +++ GLD+P+ + + + AD G + L Q GR Sbjct: 873 KNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQ----LYQLRGRV 928 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ L+ + + ++R + + G G D+ G Sbjct: 929 GRSKIASFALFLLPEN----RPLTAAAQKRLRILQSLNTLG---AGFQLASYDLDIRGTG 981 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + + + ++ K L++ + ++G Sbjct: 982 NLLGEEQSG-------HIREIGFELYQKMLEETVASIKGQK 1015 >UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6I0_SALRD Length = 478 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 59/438 (13%), Positives = 117/438 (26%), Gaps = 36/438 (8%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 V + + L E ++L + + Sbjct: 67 VQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQVLILTPTRELARQIH 126 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 E ++ + N + G D L +V+ + I + Sbjct: 127 EEFEQMKIATPRTNRMEAVLIYGGVG-YQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDA 185 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 R L E L E + SAT + + D Sbjct: 186 STLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGF 245 Query: 414 RPTGLLDPIIEVRPVAT------QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +E D +++++ E L+ TKR L ++L Sbjct: 246 LSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLL-ELEEPESALIFANTKREVSYLNKFLS 304 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G + + D+ +R E + LR G+ +LV ++ G+D+ ++S V I D Sbjct: 305 NKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVP--- 361 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + +I GR AR G I+ K + T ++ + + Sbjct: 362 --QDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSE- 418 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + N E + + + EL + Sbjct: 419 -----ARELLQERYAN---------------AEAPANGEEPGVEDFVPLVKELSDEQPEL 458 Query: 647 AQNLEFEEAAQIRDQLHQ 664 ++ E A+ + + + Sbjct: 459 LASIITELYAEAKTEDEE 476 >UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Parachlamydiaceae RepID=Q6MBR0_PARUW Length = 407 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 118/411 (28%), Gaps = 42/411 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 TF + ++ + R++ +++ L+ I Sbjct: 19 TFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNRVN 78 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 T I + ELA + + + + G S ++ Sbjct: 79 TELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIF---------GGEDSALQQSK 129 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + P L D++ + + + + + + M Sbjct: 130 LKHGVQVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMG---------------- 173 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRP 427 + + + + QT+ SAT + + D L ++E Sbjct: 174 -FYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCF 232 Query: 428 V----ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V + +L+ I++ + ++ ++ E + L+ H + V +LH+ ++ Sbjct: 233 VYCLAHQRDHELIQLIKE--NNPTQAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQD 290 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R + R G+ +LV +++ GLD +VS V I + GR Sbjct: 291 IRTIVTNKFRTGKIRLLVATDIVARGLDFSKVSHVFIYQ-----LSHESDVYVHRSGRTG 345 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 R G I AI + ++ + K+ Sbjct: 346 RYGKTGVVISLVTSRELPYLNAILKQIKQEPRWIGCPPPEKQEAAKPRKRR 396 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/459 (12%), Positives = 124/459 (27%), Gaps = 79/459 (17%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I++ L L Y + + I ++ + Sbjct: 10 EDIIKALNNLGYKNPSEVQE------------------ASIP--------KLLKGEDIIV 43 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I +++ + ELA + K L N +++ R Sbjct: 44 KSQTGSGKTASFGIPVCEKINIEEKKVQCLVLTPTRELAIQVKDELSNIGRIKKVRCAAI 103 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + P +FD++ L + + ++V I + Sbjct: 104 F---------GKQPFNEQIRELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADK 154 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M ++ L T SAT E + Sbjct: 155 MLSM-----------------GFIDQIKDILGELRLNKTTALFSATFSKEIEEICEEYMR 197 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + ++ E + K + + + L++ Sbjct: 198 NPMLLEVKSK--------------------VFNRDRIEESAIEIEEKNKVKSVYKMLKDE 237 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH D++ +R+E++ + R F VLV ++ G+ + + LV + E Sbjct: 238 GITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAARGIHVDSIELVINYEVPME--- 294 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI-TPQ 587 S + IGR R GKAI + + + + E ++ + + + Sbjct: 295 --TESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGYEIRKASLPSDDEVKAGR 352 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + K+ + K + G + + Sbjct: 353 KIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIR 391 >UniRef50_B6KVV0 ATP-dependent RNA helicase, putative n=5 Tax=Alveolata RepID=B6KVV0_TOXGO Length = 479 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 109/378 (28%), Gaps = 26/378 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + LL+ + L + L++ ++ G + G T L Sbjct: 110 LQRLLQRTQRFYALILAPTRELCLQISQQILAMGGT--LGVTVVTLVGGLDHNTQAIALA 167 Query: 331 ADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEF--EALA 386 +VV + + + + L E L D E Sbjct: 168 KKPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAE 227 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V L + P + L + + Sbjct: 228 RQTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAAL 287 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V+V T T A +L G + LH + +R+ + R E Sbjct: 288 LHL--SPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSC 345 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV + GLD+P V +V D S + I +GR AR G+A+ + Sbjct: 346 LVATEVGSRGLDIPHVQMVINFDVPL-----SSKEYIHRVGRTARAGRTGRALTIVTQYD 400 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITP---QGLNKKVV--DILALGQNIAKTKAKGRGK 613 + I ++ ++ + + + + ++ A + A K K Sbjct: 401 VEAYQRIEHALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKK 460 Query: 614 SRPIVEPDNVPMDMSPKA 631 R + K Sbjct: 461 KRGAGNKRSSGAGKKMKL 478 >UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammaproteobacteria RepID=Q4KGF7_PSEF5 Length = 473 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 61/425 (14%), Positives = 120/425 (28%), Gaps = 53/425 (12%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + + P + V L L L E +R +Q Sbjct: 69 VTAQTGSGKTAAFVLPILNRLIGPAKIRVSIKT-----LILLPTRELAQQTLKEVERFSQ 123 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T F + G ++ P + + L A L + + + + + Sbjct: 124 FT-FIKSGLITGGEDFKVQAAMLRKVPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEAD 182 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG-NYELEKSGGD 407 M + + QT+ SAT G + E Sbjct: 183 RMLD-----------------MGFAEDVQRLVDECPNRQQTMLFSATTGGSGLREMVAKV 225 Query: 408 VVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + + + I + +++ + ++ +V T T+ MA+ Sbjct: 226 LNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLAN-ETYQKAIVFTNTRAMAD 284 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + L + LH + D +R I L+ G +LV ++ GLD+ + LV Sbjct: 285 RIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARGLDVDGLDLVIN 344 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + G + IGR R +G AI ++ +I ++ + Sbjct: 345 FDMPRSG-----DEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQSFE----- 394 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + ++ K KA G+ + D A + Sbjct: 395 ----------RRTIKEVKGTYSGPKKVKASGKAVGVKKKKTDAKGDKKKAVAKAPTKRKT 444 Query: 640 EGLMM 644 Sbjct: 445 ANRPK 449 >UniRef50_D1HIP4 Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HIP4_VITVI Length = 521 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 105/342 (30%), Gaps = 33/342 (9%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +V + ++ + L L E +R + + G I Sbjct: 165 FVLSTLQQIEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 224 Query: 309 -YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + P + L + + H + + M Sbjct: 225 DLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLE--------------- 269 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----- 422 + + + Q + SAT + D + + Sbjct: 270 -SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 328 Query: 423 IEVRPVATQVDD--LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 ++ ++++ L+++ N +V++ + A +L + L E +HS + Sbjct: 329 VQHYIKLSELEKNRKLNDLLDALDFN-QVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 387 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER+ + + G +LV +L+ G+D+ V++V D S + + +G Sbjct: 388 PQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMP-----DSADTYLHRVG 442 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 RA R G AI + + S + + + R E K E Sbjct: 443 RAGRFGTKGLAITFVSSASDSDV--LNQVQERFEVDIKELPE 482 >UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax=Eukaryota RepID=RH10_ORYSJ Length = 472 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 56/470 (11%), Positives = 128/470 (27%), Gaps = 42/470 (8%) Query: 182 ARNDQAFQRGTFRVRG---EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 A + TF G E++ A R++ ++ L G+ + + Sbjct: 32 EAEPPARRPSTFAELGVVPELVAACDAMGWKEPTRIQ-------AEAIPHALEGRDLIGL 84 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEMM 297 + + P + + ++ + A E ++ ++ + Sbjct: 85 GQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTV 144 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + S P L D+L + ++ + Sbjct: 145 LVGGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDT----------------KGFSLNKLK 188 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 L E L +T SAT N + + + V Sbjct: 189 YLVLDEADKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVEVA 248 Query: 418 LLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 ++ A D L + +++ T L L Sbjct: 249 SKYSTVDTLRQEFYFVPADYKDCFLVHVLNEL-PGSMIMIFVRTCESTRLLALTLRNLRF 307 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + + + +R+ + + + ++L+ ++ GLD+ V +V D + Sbjct: 308 KAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPM-----N 362 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + + +GR AR G A+ ++ K I + +K + + + Sbjct: 363 SKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMIEKLLGYEIPDRKVDNAEIMILRERI 422 Query: 591 KKVVDILAL--GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 I + K + + + E N P+ K+ + Sbjct: 423 SDSKRIALTTMKEGGGHKKKRRKNEDDEEEEERNAPVSRKSKSFNKSRRR 472 >UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=Streptomyces sp. ACTE RepID=D1XG89_9ACTO Length = 545 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 88/322 (27%), Gaps = 34/322 (10%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM-NELGYCSGIENYSRFLSGRG 317 + LA E + + + T +L + G + S Sbjct: 127 RRAQPHAPLAMVLVPTRELAQQVTDALTPYATSVNLRVATVVGGMSISRQAGSLRRGAEV 186 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D + + + + + + M + + Sbjct: 187 LVATPGRLKDLIERGDCRLDEVTVTVLDEADQMADMG-----------------FMPQVV 229 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVAT 430 + Q + SAT + D VV + + T Sbjct: 230 ALLKQVEPDGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVADET 289 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + I AA RV++ TKR A+ + L G R LH +R + Sbjct: 290 DKKAVATRI---AAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLD 346 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 + G+ LV N+ G+ + ++ LV +D + + GR AR +G Sbjct: 347 QFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPT-----DHKDYLHRGGRTARAGESGS 401 Query: 550 AILYGDKITPSMAKAIGETERR 571 + + Sbjct: 402 VVTLVLPEEKREMTRLMADAGI 423 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 60/437 (13%), Positives = 122/437 (27%), Gaps = 30/437 (6%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + T + + + L K ++ + L + +++ + Sbjct: 34 LILGGCDIMATSQTGSGKTIAYGLPILQRMLKQRRFEHRAVRAVILAPTRELAIQVHANM 93 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKE 359 + +Y L E L + +++ + I + Sbjct: 94 KHLGMSLDYQIQL--IIGRESFQHQEKLLRKNPEVLIATPGRLLDHIREKSISLEHLEFL 151 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGN-YELEKSGGDVVDQVVRPTG 417 L E L + QT+ SAT + + Sbjct: 152 VLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFSATLEHVDVANICNQVLRAPERIEIN 211 Query: 418 LLD---PIIEVRPVA-----TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + IE R + + L+ ++ ++L+ T TK E L + L ++ Sbjct: 212 RSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSE--DYRQLLIFTATKLDTERLAKLLMDN 269 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 +H D+ +R + D R G VLV ++ GLD+ +S V D Sbjct: 270 DIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVAARGLDIRTLSHVINFDLPI---- 325 Query: 530 RSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + I GR R G AI + I + + E +G Sbjct: 326 -NPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQSYLKVKLP-CTMLEGFEAKFKG 383 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 K + +G+ + + + K + +G+ A Sbjct: 384 FKPK--------PAKKRLPVSNKGRPAKLARKGDKNAPKQKQNTAPKQDKKQGMRDSMAS 435 Query: 649 NLEFEEAAQIRDQLHQL 665 ++ A R ++ Sbjct: 436 AVDGGFAPMKRKPRAEI 452 >UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI00003C8469 Length = 430 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 105/326 (32%), Gaps = 19/326 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L V K ++ + + L+ I + G Sbjct: 50 YLLPVLNSVEKLKGKSVKAIIILPTRELALQTHRVASRLGKISGIKSTI--VYGGASIIR 107 Query: 325 LFDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + LP +V+ + + D + L E L + K F Sbjct: 108 QVEELP-GSDIVIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFT 166 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QTI +SAT + + + G + + V + L+ Sbjct: 167 PEGRQTILLSATLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDKFSTLM 226 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S I + + +V T+R + L L G +H + R I D R + Sbjct: 227 SYIHSYNSR--KAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHID 284 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +LV N+ GLD+P ++ + DA S + +GR+ R +G+A+ D Sbjct: 285 SGILVATNVAARGLDIPNITDIINFDAP-----DSTETYAHRVGRSGRMGKDGRAMTIFD 339 Query: 556 KITPSMAKAIGETERRREKQQKYNEE 581 S+ ++I R + ++ + E Sbjct: 340 PSQKSLIQSIQRRNRIKMEKINIDLE 365 >UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q234J0_TETTH Length = 744 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/447 (14%), Positives = 124/447 (27%), Gaps = 38/447 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E + ++ F++ ++ L Sbjct: 96 EHCFQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKKQTPYMLVVVPTRE 155 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L E L + G + P + D L Sbjct: 156 LCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVVGTPGRIIDQYERGAL 215 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + M + + PQ + SA Sbjct: 216 MFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKG------------EERPQNLLFSA 263 Query: 395 TPGNYELEKSGGDVV-DQVVRPT-----GLLDPIIEV----RPVATQVDDLLSEIRQR-A 443 T ++ + + + D+V+ + P + + + I Sbjct: 264 TMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILCYGG 323 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + RV++ TK A ++ + V+ LH DI +R + R G+F LV Sbjct: 324 GAHSRVIIFCETKNEANEIMLK-ANIKQDVQVLHGDIPQKQREITFQGFREGKFKCLVAT 382 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 N+ GLD+PEV L+ L+ + + I GR R G I + K S+ Sbjct: 383 NVAARGLDIPEVDLIVQLEPP-----KELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLI 437 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + I + + ++ + P L + + + G K + Sbjct: 438 ERIEKKCHIKMQKVGAPQ-----PADLIRASQNDIKKNLMSVNRTVLGIFKEVSVDLIQE 492 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQN 649 + +AL++ I + G + Q Sbjct: 493 FGPE---EALERAIAFISGFTEKMKQR 516 >UniRef50_UPI0000D8BB48 WW domain-binding protein 11 (WBP-11). n=1 Tax=Danio rerio RepID=UPI0000D8BB48 Length = 513 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 93/320 (29%), Gaps = 33/320 (10%) Query: 320 EPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D++ G + ++ + + + D + ++ ++ Sbjct: 204 ATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVQKLQRAALQDPVKCSQ--- 260 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQ 431 S+ + + D V L P + Sbjct: 261 --------------SSGVRKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYK 306 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L+S + + A +V T + + L G LH + +R+ + Sbjct: 307 DCYLVSILNELA--GNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNK 364 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + VL+ ++ GLD+P V V D + I +GR AR GK+ Sbjct: 365 FKSKSRSVLLATDVASRGLDIPHVDCVINFDIPTH-----SKDYIHRVGRTARAGRSGKS 419 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I + + + + I ++ EE + + + + K K Sbjct: 420 ITFVTQYDVELFQRIEALIGKKLPAFPTQEEEVMMLVERVSEAQRFARIEMKESSEKRKR 479 Query: 611 RGKSRPIVEPDNVPMDMSPK 630 ++ + E + K Sbjct: 480 PSAAQEVDEDGEQSSGVRKK 499 >UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI0_LACBS Length = 439 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 113/413 (27%), Gaps = 49/413 (11%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + +E + + T T+ + + ++ L Sbjct: 28 EPTPIQACTWPPALEGRDVTNISTN-SGKTLAFGIPALSRLIKSISKSSSKSGNSTISIL 86 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF--------LSGRGPG 319 L L + + G + ++ R Sbjct: 87 VLAPTRELALQTHDTLAALGKPFG-IASVAVFGGVPKDPQVKMLKNASKAKDGMTTRIIV 145 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P + D + + ++ + + M + Sbjct: 146 GTPGRILDLMQEGVCDLSGVDYLVLDEADRMLDKGFENDIRNIIS--------------- 190 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQ 431 QT+ SAT + + V G ++ + V + Sbjct: 191 STKPTAERQTMMFSATWPEAVRRLASTFQTNPVRVTVGSDDLTANSRVEQSVAVFDDSRS 250 Query: 432 VDDLLSEIRQRAAINER---------VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 D L + Q+ + + +L+ L K+ A + + L+ +G V LH D+ Sbjct: 251 KDQRLLALLQKLSHKKTSTKGASDSLILIFALYKKEASRVEQMLKYNGYSVGALHGDMSQ 310 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GR 541 R+E + + + G ++V ++ GLD+P V V + I I Sbjct: 311 PARLETLENFKNGTTGLMVATDVAARGLDIPNVGAVINYTFPL-----TIEDYIHRIGRT 365 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 GK+I + + A RE Y E P + KK Sbjct: 366 GRGGKTGKSITFFTGDNHERSLAGEFARVLREGGFDY-EGLKKFPMTIKKKEH 417 >UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3 Tax=Trypanosomatidae RepID=C0LEJ8_LEITA Length = 545 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 42/320 (13%), Positives = 90/320 (28%), Gaps = 39/320 (12%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 E + + G ++ P L D+L Sbjct: 168 LAPTRELVQQTTKVFQNLGCGQVRVCEAYGGAPRDLQARRLRNGCDVLVACPGRLKDFLD 227 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + + + S + + + + A PQT+ Sbjct: 228 GGEVSLRNLSFLVFDEADRLLDMGFQVHLDEIMAYLD---------------SASHPQTM 272 Query: 391 YVSATPGNYELEKSGGDVVDQ------------VVRPTGLLDPIIEVRPVATQVDDLLSE 438 SAT E + D + + +I R +++ L Sbjct: 273 MWSATWPESVQEMVRKYLSDDRVLIRAGTAGAGLQVNEHIKQELIFCRTFTERIEKLGLL 332 Query: 439 IRQ--RAAINERVLVTTLTKRMAEDLTEYLE-EHGE---RVRYLHSDIDTVERMEIIRDL 492 + ++++++ + E+ G V +H + +R ++ Sbjct: 333 VEDGTIDDNSDKLIIFVERQADTENTARAFSHRLGIDTRYVGAIHGGLSQRQRDRVMSMF 392 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + + +LV ++ GLD+P+V+ V A ++ S IGR R G A Sbjct: 393 KNNQIRLLVATDVASRGLDIPDVTCVVNFQAP-----KTIDSYCHRIGRTGRAGRTGTAY 447 Query: 552 LYGDKITPSMAKAIGETERR 571 + + +A + R Sbjct: 448 TFLSEEDGGLATELVNYLTR 467 >UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosaccharomyces RepID=DRS1_SCHPO Length = 754 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 47/438 (10%), Positives = 124/438 (28%), Gaps = 37/438 (8%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + R L L ++ T + + G ++ Sbjct: 317 ILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD-IMVCLCIGGLSLKLQEQ 375 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESH-VTIPQIGGMYRGDRARKETLVEYGFRL 368 P D++ V+ + + + M A + Sbjct: 376 ELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL--------- 426 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------ 422 + + + QT+ SAT + + + V Sbjct: 427 --------NEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQ 478 Query: 423 --IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + VRP + + + + R ++ +K A + +H + Sbjct: 479 EFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSL 538 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R+ + D R G+ + L+ ++ G+D+ + +V +A + + +G Sbjct: 539 SQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAP-----ATHEVYLHRVG 593 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R AR G+AI + + K + + + + + K++ ++ + Sbjct: 594 RTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPV 653 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVP--MDMSPKALQQKIHE--LEGLMMQHAQNLEFEEA 655 Q + + + R + M + + Q ++ E ++ Sbjct: 654 VQKVLDEEKQERELKIAERDLKKGENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDK 713 Query: 656 AQIRDQLHQLRELFIAAS 673 + + Q+ + + + Sbjct: 714 KSLAKRKKQMEKEEVPRA 731 >UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE Length = 737 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 57/431 (13%), Positives = 125/431 (29%), Gaps = 36/431 (8%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT-- 290 + P + ++ + L + + Q + T Sbjct: 149 RTGCGKTLAFTVPVVERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGK 208 Query: 291 -QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 M G + + P + D L L + + + ++ Sbjct: 209 AANLYTMCVYGGTPYDGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQ 268 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + K E QT+ SAT + + + Sbjct: 269 MLAMGFIEDVETIL--------------KQGENNRDQIQTLLFSATLPKWVQGLTQRFLR 314 Query: 410 --DQVVRPTGLLDPIIEVRPVA-------TQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + G V Q LL ++ R ++ T +K+ A Sbjct: 315 PGHKFLDLVGDDRMQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAA 374 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +L+ L + + LH D+ R + + R G F +L+ ++ GLD+ + LV + Sbjct: 375 ELSVVLGDS-LGAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDVTGIELVLM 433 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 +D + I GR R +G + K M I + + ++ Sbjct: 434 VDPP-----ADWETYIHRSGRTGRAGSSGVCVTLVTKKMEYMVPIIEKRAGMKFERIGAP 488 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + + + + + + + + D +AL + + ++ Sbjct: 489 QPADMARIAAERTLSLLGEVDPAVVGHFREAAERYLSESAADGRDP---AEALARALAKI 545 Query: 640 EGLMMQHAQNL 650 G + A++L Sbjct: 546 TGYKVMKARSL 556 >UniRef50_C7PZF8 DEAD/DEAH box helicase domain protein n=35 Tax=Actinomycetales RepID=C7PZF8_CATAD Length = 502 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 90/316 (28%), Gaps = 12/316 (3%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 L AR + L T+ + + + R L+ G Sbjct: 117 AFGLALLARTAGRRAEPREPLALVLVP-TRELAQQVTDALTPYAHAVRLR-LATVVGGIS 174 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 L + +VV I R D+ L E + + Sbjct: 175 IGRQAHALRSGAEIVVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFLPQVTELL 234 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLS 437 + A QT+ SAT + D V + E + + D + Sbjct: 235 DQVAPGGQTMLFSATLDRNVDRLVRRFLTDPVTHSVDPSAASVTTMEHHLLHIEGSDKNA 294 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + A+ V++ T T+ A+ L L +G R LH +R + R G+ Sbjct: 295 AVAHIASREGGVIMFTDTRHGADRLVRDLLANGVRAAALHGGKSQPQRTRTLEQFRGGQV 354 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 L+ N+ G+ + + LV +D + + GR AR +G + Sbjct: 355 TALIATNVAARGIHIEGLDLVVNVDPP-----ADHKDYLHRGGRTARAGESGTVVTLVLP 409 Query: 557 ITPSMAKAIGETERRR 572 + Sbjct: 410 NQRRDMTRMMAAAGIT 425 >UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=Theileria parva RepID=Q4MZI4_THEPA Length = 894 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 106/351 (30%), Gaps = 24/351 (6%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + ++ R L G + L +VV I Sbjct: 494 LIIAPTRELVIQISNECAKFSKSVGLRTL-AVYGGAGIGEQLNALKRGAEIVVGTPGRLI 552 Query: 345 PQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + G + R L E + QT SAT Sbjct: 553 DVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRPDRQTALFSATFPLMI 612 Query: 401 LEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + +V + G +D + V ++ LL + + +++ Sbjct: 613 ENLAKKILVKPLQIVVGQRGKSASQVDQHVVVLNDDKKLLKLLKLLGEWHEHGN-IIIFV 671 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 T+ +E L L +G LH +D +R + D R G+ +L+ ++ G+D+ Sbjct: 672 NTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKKTILIATSIAARGIDVK 731 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 V LV A + +GR R G + + + + I + R Sbjct: 732 SVVLVINYAAP-----DHFEDYVHRVGRTGRAGTIGTSYTFLTPEEAAKSHDIIKALRLA 786 Query: 573 -----EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 ++ + ++ H T G + G +++ + + R Sbjct: 787 SQEVPKELLQLSQAHLATMDGKLSRGRGFGGKGFKFTESEQSRQQQERKRA 837 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 109/675 (16%), Positives = 211/675 (31%), Gaps = 60/675 (8%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L EA++ +E GL+ G L V+ SG+T A A RPT+ + Sbjct: 2 LIHRIAAQLYTAEALQAVEAGLDAGED--VTLAVSQSGRTLMAAAQFARRPRPTVYIVSG 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + V F P + ++ + ++ + R A Sbjct: 60 EDAADRAARSLAAYVGLAHVCRF-------------PERKDYPWREQAPDDAVVAQRCEA 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++ + ++VAS A+ P Y + VG I + +RL + Y Sbjct: 107 LGRIVRGDNCIMVASARALLRCVPPVESRYWEST-TFAVGEEIPFDEVPQRLVGMGYTNA 165 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 A G FRV G+ +++FPA+ + +R+E F +E++R+ TGQ + I+ Sbjct: 166 GAADAPGLFRVHGDTVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIF 224 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P E + + + L ++++ + +T L +M Sbjct: 225 PCRELALTDEAVHNMHVALYRA-SQDDSKLAALLEMVDARIVTPELDRFLPVMYGQTVSP 283 Query: 305 GIENYSRFLSGRGPGEPPPTLF-DYLPADGLLVVDESHVTIPQIGGMY----RGDRARKE 359 + L P +LF D L A + I ++ G+Y + D ++ Sbjct: 284 LAHVSGKAL---VVLSEPRSLFDDCLRAYEDIEARAGEAGIDRLDGLYVRAQQLDFGAQQ 340 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP---GNY---ELEKSGGDVVDQVV 413 L LK E+ +++ G + + Sbjct: 341 RLNYVSLIRAGGAVTAELKIEQPAIAGSDNRFMTRVQEVVGKRYACVFAIPDRGARESME 400 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 G E A + I +R + ++ A + Sbjct: 401 LTFGDEGITFEESLTAAPENA--GVIGERVRVAAADSADRAARQDAHAAIRERKADALNA 458 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 R L + + + G + L +G+ +P+ +L AD + + R Sbjct: 459 RSLEAGAAQAAAGAAVPTISRGRVTFVDA--ALPQGVVVPDANLAVFSIADLNARMDANR 516 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + R+ R V+ I + K ++E G + Sbjct: 517 A------RSRRKVDITQITF-------PFKPGDYVVHATHGIALFSEIARQEVGGKERDY 563 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 A G P+ + D + + P + ++ L A N + Sbjct: 564 ---------FLLEYADGDKLYVPLEQVDRITRYVGPDGDKPRLTRLNTADWTRATNKARK 614 Query: 654 EAAQIRDQLHQLREL 668 A ++ L L Sbjct: 615 NAKKLAFDLVDLYTR 629 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 63/459 (13%), Positives = 125/459 (27%), Gaps = 48/459 (10%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP-----KT 247 + R + I D ++E+ E +D T + I Sbjct: 627 YTRRSSITGIACPP--DTPEQIEM-----EESFPYD-ETRDQLEAIADIKADMEAPKPMD 678 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + ++ Q + E G +E Sbjct: 679 RLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHYETFFERFAPFGLE--VE 736 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 SRF + + V+ +H + + +G + Sbjct: 737 VLSRFRTP----AQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRFGVQ 792 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 L N + + +SATP ++ + V D + T + Sbjct: 793 HKEQLKNLREQI--------DVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPVIVH 844 Query: 428 VATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVE 484 V D++S IR +V + + +D + E RV H + E Sbjct: 845 VGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMSPRE 904 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +++ + + DVL+ ++ G+D + + I D+ + G + L Q GR R Sbjct: 905 VEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ----LYQLKGRVGR 960 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + E G+ + D+ G Sbjct: 961 SATQAYAYFMFPGELP-------LTEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSL 1013 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + S +V D+ + L Q + E G Sbjct: 1014 MGAEQHGNLS-------SVGFDLFTQMLGQAVAEARGDD 1045 >UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54CB8_DICDI Length = 573 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 112/365 (30%), Gaps = 43/365 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 ++ F + H + + + L L N E ++ + Sbjct: 182 ISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSV---LVVAPTRELANQINQEAEQYLRL 238 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 ++ + G + + P + D++ + L + + S + + + Sbjct: 239 VNIEIATI-YGGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADR 297 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + Q +Y SAT + + Sbjct: 298 LMEMGFEQ-----------------QIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIR 340 Query: 410 DQVVRPTGLLDPIIEVRPVA---------TQVDDLLSEIRQR--AAINERVLVTTLTKRM 458 + G +VD L+ + + A + L+ T+TK+ Sbjct: 341 TPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKG 400 Query: 459 AEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 A+ L Y++ +G R+ LH D+D R I++D + D++V ++ GLD+ +S Sbjct: 401 ADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGIS 460 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG---DKITPSMAKAIGETERRR 572 V + + IGR R G + + + +R Sbjct: 461 HVIN-----FSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRS 515 Query: 573 EKQQK 577 E++ Sbjct: 516 EQEVP 520 >UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilaginomycotina RepID=DBP3_USTMA Length = 585 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 96/312 (30%), Gaps = 35/312 (11%) Query: 295 EMMNELGYCSGIENYSRFLSG--RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G + S R P + D L + +++ + + M Sbjct: 270 MICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLD 329 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + + T SAT + + V Sbjct: 330 KGFEPDIRAIIGMC--------------KSREEGRHTSMFSATWPPAVRGLAESFMNGPV 375 Query: 413 VRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAA---INERVLVTTLTKRMAED 461 G ++ +EV + L++ + +++L+ L K+ A+ Sbjct: 376 RVTVGSDELSANRRVEQTVEVLADGYAKERRLNDFLRSVNAQRSKDKILIFALYKKEAQR 435 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + + L G +V +H D+ ER+ + + E +LV ++ GLD+P V V Sbjct: 436 IEQTLRRGGFKVSGIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIPNVEHVVNY 495 Query: 522 DADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + I GK++ + ++ + A + + + QK + Sbjct: 496 TFPL-----TIEDYVHRIGRTGRGGKTGKSLTFFTEMDKAHAGELIRVLK--DADQKVPD 548 Query: 581 EHGITPQGLNKK 592 P + KK Sbjct: 549 ALTKFPTTIKKK 560 >UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA Length = 544 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 89/322 (27%), Gaps = 39/322 (12%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 E + + G ++ P L D+L Sbjct: 168 LAPTRELVQQTTKVFQNLGCGQVRVCEAYGGAPRDLQARHLRNGCDALVACPGRLKDFLD 227 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + + + S + + + + A PQT+ Sbjct: 228 GGDVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLD---------------SASHPQTM 272 Query: 391 YVSATPGNYELEKSGGDVVDQ------------VVRPTGLLDPIIEVRPVATQVDDLLSE 438 SAT + + D + + +I R +++ L S Sbjct: 273 MWSATWPESVQAMARKYLSDDRVLIRAGTAGAGLQVNERIKQELIFCRTFTERIEKLGSL 332 Query: 439 IRQ--RAAINERVLVTTLTKRMAEDLTEYLE-EHGE---RVRYLHSDIDTVERMEIIRDL 492 + +++++ + E+ G V +H + +R ++ Sbjct: 333 VEDGTIDDNKDKLIIFVERQADTENTARAFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMF 392 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + +LV ++ GLD+P+V+ V A ++ S IGR R G A Sbjct: 393 KSNHIRLLVATDVASRGLDIPDVTCVVNFQAP-----KTIDSYCHRIGRTGRAGRTGTAY 447 Query: 552 LYGDKITPSMAKAIGETERRRE 573 + + +A + R Sbjct: 448 TFLGEEDGGLATELVNYLTRCH 469 >UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Trypanosomatidae RepID=A4H460_LEIBR Length = 689 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 98/393 (24%), Gaps = 30/393 (7%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L + V ++ + + A E +++ Sbjct: 125 DVLVQARTGSGKTL--AFGIPIVERLLKLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCG 182 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + + G + P D+L L + + Sbjct: 183 ISCGLIVTAL-YGGVAYANQERVLRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEA 241 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M L+ + E QT+ SAT + Sbjct: 242 DHMLDIGFKDDIELLLSQVAEQNG-------STSAEKTVHQTLLFSATVPEWV-HTCSFI 293 Query: 408 VVDQVVRP-TGLLDPIIEVRPVATQVD--------DLLSEIRQRAAINERVLVTTLTKRM 458 D+ G + L I+ + + R LV T TK+ Sbjct: 294 AKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEISSMLADLIKVYSGAHGRTLVFTNTKKD 353 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 DL+ + + LH D+ +R ++ R +F VL+ ++ GLD+P V LV Sbjct: 354 CHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVLIATDVAARGLDLPMVDLV 411 Query: 519 AILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + I GR R G +L + + I + + Sbjct: 412 IQC-----APPSDIDAFIHRAGRTGRAGRKGVCVLLYQPREEYVVERIERHAKMKFDVLP 466 Query: 578 YNEEHGITPQGLNKKVVDILA--LGQNIAKTKA 608 I D+ + Sbjct: 467 APTREEILKAVARDAAEDLARVERRATNLFMEQ 499 >UniRef50_C2K9U3 ATP-dependent RNA helicase (Fragment) n=2 Tax=Staphylococcus RepID=C2K9U3_STAAU Length = 361 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 98/303 (32%), Gaps = 19/303 (6%) Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 L E + + + QT+ SAT + + T Sbjct: 2 LILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTM 61 Query: 418 L---LDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGER 472 DP IE + + E +V TKR ++LT L G + Sbjct: 62 NNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYK 121 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH DI +R+E+++ + + ++LV ++ GLD+ VS V D + Sbjct: 122 AEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIP-----QDT 176 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 S IGR R G A+ + + I + I + R+ + + Sbjct: 177 ESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAR--- 233 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 DI +N +++ + + + + + EL + L Sbjct: 234 -EDDIKEKVENWMSKESES---RLKRISTELLNEYNDVDLVAALLQELIEANDEVEVQLT 289 Query: 652 FEE 654 FE+ Sbjct: 290 FEK 292 >UniRef50_A0K1H7 DEAD/DEAH box helicase domain protein n=27 Tax=Actinobacteria (class) RepID=A0K1H7_ARTS2 Length = 635 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/472 (12%), Positives = 125/472 (26%), Gaps = 35/472 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++V+ + + + G+ S P + RE Sbjct: 22 ITEPFPIQVKTLPDTLAGRDVL--GRGRTGSGKTIAFAIPLVARLAEREAKHFRKPGRPM 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + + ++ G + + P L Sbjct: 80 GLVLAPTRELATQINATIEPMAKAMGLNTTVI-YGGISQARQEKALRAGVDIVIACPGRL 138 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + L + + + M + + Sbjct: 139 EDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKL-----------------MDMTPS 181 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQR 442 Q + SAT N + + + + + E + + ++ Sbjct: 182 QGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVE 241 Query: 443 AAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A R ++ TK A L + L + G LH ++ R + + G+ VLV Sbjct: 242 LASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRVLV 301 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+ + +V LV +D E ++ + GR AR + G + S Sbjct: 302 ATDVAARGVHVDDVELVIHVDPPTE-----HKAYLHRSGRTARAGSDGTVVTLTLPEQQS 356 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K + + E + + L ++ D + A AK Sbjct: 357 DVKKLMKAAGV-EVNFERVTANSPLVAELVGEMADKIDPRTRAALLAAKSNQGGGTSTGA 415 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 + +A + A R L + +A Sbjct: 416 NAERK----RARRTTQAAPTAGGRGGRGGRGRVGAEAPRTDLPRSERRAVAY 463 >UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAH8_9BACT Length = 542 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 114/378 (30%), Gaps = 31/378 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + T + + LA R++ ++ K E + Sbjct: 170 QTGTGKTAAFLLAVFTRLLNHPLEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTG-- 227 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 ++ G + S P + DY L + + I + M Sbjct: 228 -LTSVVVFGGMDHEKQRRSLEQPVDLVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRML 286 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + QT+ SAT ++ L + G + + Sbjct: 287 DMGFIPDVKRIVSQLPRKG---------------ERQTLLFSATLEDHILRLASGWLAEP 331 Query: 412 VVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYL 466 V+ + IE + D+ L+ + +RVL+ K + L L Sbjct: 332 VIVESEPEKMVSENIEQTFYSVLRDEKLALLLYILRTEPYDRVLIFGNRKDVNLRLQYDL 391 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G V L DI +R++++ R G +++ ++ G+ + +VSLV D Sbjct: 392 ARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKIVIATDVAARGIHVDDVSLVINYDLP-- 449 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + IGR R NGK+I + + I + + + E+ Sbjct: 450 ---ERAEDYVHRIGRTGRAGHNGKSISFLCEYGAYYLPDIEKLLDVQFHSTQPTEDMLKM 506 Query: 586 PQGLNKKVVDILALGQNI 603 P+ + + + Sbjct: 507 PEPVPGA--KLPKREADR 522 >UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Plasmodium (Vinckeia) RepID=Q4Z5Q6_PLABE Length = 1312 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 57/393 (14%), Positives = 121/393 (30%), Gaps = 20/393 (5%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L NN LT + +++ NE + + G + L Sbjct: 633 HQDKLRNNDGPIGIILTPTRELSIQVKNEASIYCKAVDLK--ILAVYGGSNIGAQLNVLK 690 Query: 331 ADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++V I + + +RA L E L +++ Sbjct: 691 KGVEIIVGTPGRIIDILTISNSKVTNLNRASFIVLDEADRLLDLGFESQIHSILNNCRKD 750 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT +SAT NY + + + G + +EV ++ LL + Sbjct: 751 KQTAMISATFPNYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLEEKKKLFRLLKLL 810 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +L+ + A+ L L ++ + LH D +R ++ + + + Sbjct: 811 GEWIKYG-LILIFVNKQLEADLLYLELFKYEYKTLVLHGGQDQSDREHTLKSFKDEQNKI 869 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +++ G+D+ + LV + I IGR R+ N G A + Sbjct: 870 LIATSVMARGIDIKNIILVINYECP-----DHIEDYIHKIGRTGRSNNIGYAYTFITPNE 924 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + A I + + I + + + ++ ++ K G Sbjct: 925 HTKAYDIYNLIKNNIYYINKTIDIPIELEHMANEYMNSKITEKDGNKLNTSNGGYKGKGF 984 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + EL + + ++ E Sbjct: 985 KFTPNEKSRMQMDKDLAKKELGLIEEKEDEDRE 1017 >UniRef50_B0T8G9 DEAD/DEAH box helicase domain protein n=52 Tax=Alphaproteobacteria RepID=B0T8G9_CAUSK Length = 776 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 57/397 (14%), Positives = 119/397 (29%), Gaps = 34/397 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + ++E L F + T + E+ +A + Sbjct: 19 YLEPTPVQAAVLEDEAIGRDLL-VSAQTGSGKTVAFGLAAATTLLGDAEKFAKAGLPMCL 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +A R++ ++ N+ L + + G + E + P L Sbjct: 78 VIAPTRELAIQVNRELAWLYADAG---AVVVNCVGGMDARREQRALNFGAHIVVGTPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ L + + + + M + Sbjct: 135 RDHIERGHLDLSELKVAVLDEADEMLDMG-----------------FREDLEFILDAAPS 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR-PTGLLDPIIE-----VRPVATQVDDLLSEI 439 +T+ SAT ++ + D + G +P + VR +V+ + + Sbjct: 178 ERRTLLFSATLAREIVQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVEHAVVNL 237 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + LV T+ L L E G V L ++ ER + ++ LR G V Sbjct: 238 LRYFESPG-ALVFCNTRESVRALHSKLRERGFAVVGLSGELSQRERADALQALRDGHARV 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT- 558 V ++ GLD+P++ LV + ++ +L+ GR R T Sbjct: 297 CVATDVAARGLDLPDLGLVIHAELPV-----NKATLLHRSGRTGRAGKKGVSALVVPYTR 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 A+ + I + + + D Sbjct: 352 RRKAEQLLMAAGVEGHWGGAPTADEIRLKDTERLLDD 388 >UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=4 Tax=Eukaryota RepID=D1HEC3_VITVI Length = 786 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 119/385 (30%), Gaps = 23/385 (5%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL------LEEQRL 286 + +P + +V + AA +LE K + L Sbjct: 44 RKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLERLKQHVPQTGVRALIL 103 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + L+ + + + L G+ + F+ L + +++ + Sbjct: 104 SPTRDLALQTLKFTKELARYTDVRISLLV--GGDSMESQFEELAQNPDIIIATPGRLMHH 161 Query: 347 IGGMYRGDR--ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + E + K + QT+ SAT + E + Sbjct: 162 LSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTLLFSATLPSALAEFA 221 Query: 405 GGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + D + + L ++ LL IR++ + +++ L+ TK Sbjct: 222 KAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIREQISSDQQTLIFVSTKH 281 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E L E G + D+D R I R + +L+ ++ G+D+P + Sbjct: 282 HVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDN 341 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V D F + + +GRAAR G A + + + + Sbjct: 342 VVNWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAA 396 Query: 577 KYNEEHGITPQGLNKKVVDILALGQ 601 EE P + K+ I+A G Sbjct: 397 PTEEEVLQDPDEVMSKIDQIVANGG 421 >UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Paramecium tetraurelia RepID=Q6BFH3_PARTE Length = 664 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 61/367 (16%), Positives = 108/367 (29%), Gaps = 24/367 (6%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 R + + L R + L+ NK L + ++ Sbjct: 53 QQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKNPYVLVLLPTRELAIQ 112 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGD 354 + E EN R + G D + +VV + + D Sbjct: 113 VTTEFNTILHKENEYR-IYSIYGGTDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKLD 171 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEE-FEALAPQTIYVSATPGNYELEKSGGDV----- 408 + L E L K F Q + SAT ++ E S + Sbjct: 172 EIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANTK 231 Query: 409 -VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA----INERVLVTTLTKRMAED-- 461 ++ + R ++ + + L I + + R ++ TKR + Sbjct: 232 HINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEII 291 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L + LH DI +R + G+F LV N+ GLD P+V L+ Sbjct: 292 LHSKLPAE---TQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQC 348 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + S I GR R G I + K + + + + + + + Sbjct: 349 NPP-----KDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAPQ 403 Query: 581 EHGITPQ 587 I Sbjct: 404 HQDIIKA 410 >UniRef50_A5KB15 ATP-dependent RNA helicase, putative n=1 Tax=Plasmodium vivax RepID=A5KB15_PLAVI Length = 1341 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/415 (13%), Positives = 134/415 (32%), Gaps = 27/415 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L NN LT + ++ +E + + + G T + L Sbjct: 733 HQPPLRNNDGPIAIILTPTRELSKQVKSEARPYC--QAVNLRILAVYGGSNIGTQLNTLK 790 Query: 331 ADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++V I + + +R L E L +++ Sbjct: 791 RGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKD 850 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT +SAT NY + + + G + +EV ++ LL + Sbjct: 851 KQTAMISATFPNYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLEGGKKIYRLLKLL 910 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++ +L+ + A+ L L ++ + LH D +R ++ + G+ + Sbjct: 911 GEWSSYG-LILIFVNRQLEADLLYLELFKYDYKTLVLHGGQDQADREFTLQTFKEGKNKI 969 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +++ G+D+ ++ +V + I +GR R+ G A + Sbjct: 970 LIATSVMARGIDIKDIIVVINYECP-----DHLEDYIHRVGRTGRSNKIGYAYTFVSPEE 1024 Query: 559 PSMAKAIGETERRRE----KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + A I + K E + + + K Sbjct: 1025 HAKAYDIYSLIKNNIYYMNKTIDMPRELEELVREFTQSSNYAEVRKKGYKGKGFKFTPNE 1084 Query: 615 RPIVEPDN--VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + ++ D ++ Q +I +E + + N + + + Q+++L + Sbjct: 1085 KSRLQMDKANAKRELGLPNPQNEIKRIELEIQRIKMNDTMDLSLK-AKQINELMK 1138 >UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 Tax=Euteleostomi RepID=DDX59_HUMAN Length = 619 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/385 (17%), Positives = 121/385 (31%), Gaps = 31/385 (8%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++ P + L L + + L ++ G + Sbjct: 257 FLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQL 316 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y + P L D + + + V + + M + ++ Sbjct: 317 YRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQV--------- 367 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 L E QTI VSAT + + + + V TG + Sbjct: 368 --------LDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDI 480 II + L + + VLV K A+ L+E +++ G + +HS+ Sbjct: 420 IILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEK 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +ER I++ L G+++V+V +L GLD+ V LV D S + IG Sbjct: 480 SQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMP-----SSMDEYVHQIG 534 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R NG AI + + + + I + + + +K Sbjct: 535 RVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQ 594 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVP 624 QN T A R + ++ Sbjct: 595 TQNDLVTGANLMDIIRKHDKSNSQK 619 >UniRef50_D1YEX7 DEAD/DEAH box helicase n=3 Tax=Propionibacterium acnes RepID=D1YEX7_PROAC Length = 700 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 57/445 (12%), Positives = 117/445 (26%), Gaps = 42/445 (9%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDI---ALRVELF--DEEVERLSLFDPLTGQIVSTI 238 G F G +I A + R+++ + + D L + Sbjct: 222 VTGIDHEGGFSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGR---DVLGRASTGSG 278 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + R + L L L ++ Sbjct: 279 KTLAFGVP---LLSRLSATPREDNRPRALILSPTRELAMQIADVLSSLASSMG-LSTILI 334 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G G + + P L D L + + + + M Sbjct: 335 AGGMSYGPQTKAFKRGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELG---- 390 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + Q + SAT + + + V Sbjct: 391 -------------FMEAVGSILDAIPADGQRLLFSATLDGAVNKLVRRYMHEPVTHEVDP 437 Query: 419 LDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + + + + + A + +V T+R A + E L E G Sbjct: 438 DKGSVATMTHHAFQIKPHEKVGLMCEIANRSGHTIVFARTQRGASRMAEQLREAGVMAGA 497 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH + R ++ + G VLV ++ G+D+ +V+LV +D + + Sbjct: 498 LHGGLTQGARARVLAAFKDGSLPVLVATDVAARGIDVDDVTLVLQVDPPM-----NFKDY 552 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN--EEHGITPQGLNKK 592 + GR AR + G + + + + + ++H G + Sbjct: 553 LHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVKPVEAQVTRGDDHVAEVAGCSPA 612 Query: 593 VVDILALGQNIAKT--KAKGRGKSR 615 + + A K + K+R Sbjct: 613 LGAPIDEKDYEALVAPKQQRGKKAR 637 >UniRef50_C4Q9A6 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q9A6_SCHMA Length = 625 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 55/435 (12%), Positives = 118/435 (27%), Gaps = 55/435 (12%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + L L ++L + + G + S L+ Sbjct: 196 HAVTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHSQEASLRLNPDLVVA 255 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + L E L + + Sbjct: 256 TPGRLIDHLSNAP----------------SFNLQHIEYLVLDEADKLLDEYFAEQIGEII 299 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 +F + QT+ SAT E + + D V L + +RP Sbjct: 300 KFCSTKRQTLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHREDD 359 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + +R +V TK+ + L G LH ++ +R+E ++ Sbjct: 360 RRAIVIALLMRHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRLEALKRF 419 Query: 493 ---------RLGE---------------FDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 + D+L+ +L GLD+P V V Sbjct: 420 SYVGTSDECKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINY-----TL 474 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 ++ + + +GR AR G+A+ + + K I + + + I Sbjct: 475 PQTMKQYVHRVGRTARIMNVGRAVSLVGEDDRKVMKEIMKQA-PYPVKARVIASDVIATY 533 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 ++ + A+ + + ++ + + + Sbjct: 534 QSKITRLEPIIGKILAAEAEERELRAAQSQLSKAEELVSCMKSGTTPLSCVERRVDWFAE 593 Query: 648 QNLEFEEAAQIRDQL 662 + + + +I ++ Sbjct: 594 RKRDKKTIGRISKEI 608 >UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 Tax=Entamoeba dispar SAW760 RepID=B0ET33_ENTDI Length = 406 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 108/370 (29%), Gaps = 39/370 (10%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + + L + + + + + G ++ Sbjct: 61 KEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRPHV 120 Query: 318 PGEPPPTLFDYLPADGLL---VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P + ++ + + + I + + D A + + Sbjct: 121 IVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYL------------ 168 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVR 426 E T+ SAT + + V L Sbjct: 169 -----IEKLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFI 223 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + LLS +++ + +++ T+ L L + G LH + +R+ Sbjct: 224 PFKYRDGYLLSILKE--TEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRL 281 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + + G+ +LV ++ GLD+P V +V D E + I +GR AR Sbjct: 282 IALEKFKSGKRGILVATDVASRGLDIPNVDIVINYDCPLE-----PKDYIHRVGRTARAG 336 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA---LGQN 602 +G AI + + + + I ++ + K N+ I Q L ++ GQ Sbjct: 337 KSGYAITLVTQYSIELYQRIETMIEKKLNEYKANDAMRIVSQQLKEEAQKKKEKLQKGQK 396 Query: 603 IAKTKAKGRG 612 + Sbjct: 397 KLNEEEDNDE 406 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 115/386 (29%), Gaps = 30/386 (7%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + P ++A E + L L N + L++ + G + Sbjct: 55 FCLPIVNKLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQV 114 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 S + P + ++ + + + S + + M Sbjct: 115 VSLQHNAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMG-------------- 160 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---- 424 + ++ E QT+ SAT + + + + + I+ Sbjct: 161 ---FYDDIMEIIENLPKNRQTMLFSATYEKNIETFASNILKNPIYKEISDEKEILINQKF 217 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 ++ L+ + + L+ K E L + L + G + LHSD++ + Sbjct: 218 YEVTPSEKTALIPALISH-NQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQ 276 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R E + + +L+ ++ GL + +V LV D E+ IGR AR Sbjct: 277 RDETMVLFSNKSYPILIATDVASRGLHIDDVDLVINYD-----LSLDEKIHTHRIGRTAR 331 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G AI + + I E + + + ++ + + Sbjct: 332 AGKGGLAISLFTENEIDKFEIIKE--KFNNIKIENPKDIKDDISFEINSNFRTVFINGGK 389 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSP 629 + KG I E D+ Sbjct: 390 KQKLRKGDILGALISEAGLKSDDIGK 415 >UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6Y7_PHYIN Length = 847 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 61/439 (13%), Positives = 133/439 (30%), Gaps = 25/439 (5%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL------LEEQRLTQRT 290 +P V + V + AA ++E K + L+ Sbjct: 57 KVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEKLKEHSTKIGVRAVVLSPTR 116 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ + S + L GE F+ + ++ ++V + + + Sbjct: 117 ELAVQTLRFAKQLSKFTSLKMAL--IVGGEGMDQQFEAIASNPDVLVATPGRLMHLLQEI 174 Query: 351 --YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + E + + + + QT+ SAT ++ + + Sbjct: 175 PDFNLKAVEYVVFDEADRIFEMGFAEQLQEILKNMPTSRQTLLFSATLPKALVQFARAGL 234 Query: 409 VDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + + + I E + L +R+ ++ +V T+ E Sbjct: 235 SDPELIRLDVENKISENLKMAFFTVRSLDKPALFLYMVREFLPKGDQTIVFAATRHHVEF 294 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L + + D+D R + R + ++L+ ++ G+D+P ++ V Sbjct: 295 LHALLAANHIEASCAYGDMDQASRKINLGKFRAKKTNLLIVTDVAARGIDIPLLNNVLNY 354 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 F + + + +GRAAR G A + D + RR + E Sbjct: 355 -----SFPPTAKLFVHRVGRAARAGRSGTAFSFVDPDETPFMVDLHLYIGRRLEDSSPEE 409 Query: 581 EHGITPQGL-NKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 G P L +V D+ N + + P P+ + Sbjct: 410 SAGTKPYSLSTMRVEDVHYGAFPNELIDQENEALQETVRSHPQVSPLVKVCDNAYKAYAR 469 Query: 639 LEGLMMQHAQNLEFEEAAQ 657 +++ E A + Sbjct: 470 TRADPSKNSIRRGKELAVK 488 >UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HDE9_ANADF Length = 680 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 48/417 (11%), Positives = 115/417 (27%), Gaps = 18/417 (4%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + A + + + + T+ + + + + ++ + Sbjct: 65 KTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQE-FTALAKHRDLSVVAVY 123 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRP 376 G L A ++V I + D L E L Sbjct: 124 GGASMGEQLQKLEAGAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEV 183 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEVRPVAT-- 430 + + Q + SAT + + D ++ I V A Sbjct: 184 TRILDNLPKDCQQLLFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDA 243 Query: 431 --QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + +LL I E +V T+ + L +G L+ D+ ER + Sbjct: 244 YPKPRNLLYMI--EMEEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERV 301 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + ++ GE +V ++ G+D+ +++ V + +GR R Sbjct: 302 MAKVKRGEVRFMVATDIAARGIDISDLTHVINY-----SLPEDPAVFLHRVGRTGRIGKK 356 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G ++ A+ + +++K ++ VV++ Sbjct: 357 GTSLSIVSGAEIHTLTALQKKFGIAFEEKKLPTPDEARRLWTDRHVVELKDAMSASIFEA 416 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + + K + A++ E + + ++ + Sbjct: 417 FIPLSQELRNRPDGEYLVAFALKYFFTHHRMERAQDREKAEHKREEHERREKGEVKR 473 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 42/346 (12%), Positives = 100/346 (28%), Gaps = 19/346 (5%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + + + L + L++ +EL + + ++ G D L Sbjct: 88 LEKIPADERRVRALILCPTRELALQVADELKMLAKHKGLK--IAAIYGGASMKQQEDALE 145 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 ++V I + D L E L + + Q Sbjct: 146 EGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQV 205 Query: 390 IYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEVRPVAT----QVDDLLSEIRQ 441 + SAT + ++ I +R + + +L+ + Sbjct: 206 LLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVL-- 263 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + ++ T+ +T L +G L+ D+ ER ++ ++ GE +V Sbjct: 264 EKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMV 323 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ G+D+ + V + +GR R G AI + Sbjct: 324 ATDIAARGIDISGLEYVINY-----SLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELA 378 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 ++ + + +++ + V +I Sbjct: 379 TYTSLEKKYGIKFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFE 424 >UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gammaproteobacteria RepID=Q21EB3_SACD2 Length = 436 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 56/355 (15%), Positives = 106/355 (29%), Gaps = 17/355 (4%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 L + L+ + +G L GE + + ++V + Sbjct: 77 ILLPTRELALQTVKAFEQFAGYTQIKVGLIM--GGEAYKHQVATVRKNPEVLVATPGRLV 134 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 I L E L L Q + SAT + + Sbjct: 135 EHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQNLLFSATLKHKGIGG 194 Query: 404 SGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 G + D V + + + L+ ++ +RV+V T+ Sbjct: 195 ITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKLIAE-EDAQRVIVFCNTR 253 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + ++ L + Y+H ++ +R +++ G+ VLV ++ GLD+ +V Sbjct: 254 LQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLVATDVAARGLDIKDVD 313 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQ 575 LV A G + +GR R+ G AI + +I + R Sbjct: 314 LVINFSAAFTG-----DEHVHRVGRTGRSDKTGLAITLISPKEFNPMSSIERYLKIRLIP 368 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +K G K A + G+ + + D +PK Sbjct: 369 RKVKGLEGTYNGPKKLKSSGKAAGPKKKKTKTTAGKPGKKLPSKKDPQKKRSAPK 423 >UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Ustilago maydis 521 RepID=UPI00003C10F6 Length = 594 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 84/248 (33%), Gaps = 11/248 (4%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + LL+ L + ++ E G G P L Sbjct: 195 QPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLR--TCAVYGGVPKGPQIRDLQR 252 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + + I + G R + E L + + K + QT+ Sbjct: 253 GAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTL 312 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQR 442 SAT +G + + G + IIEV + L+ + Sbjct: 313 MFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETI 372 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +A N +V++ T TKR+A+DLT++L + G +H D ER ++ + + G ++V Sbjct: 373 SAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVA 432 Query: 503 INLLREGL 510 + GL Sbjct: 433 TAVASRGL 440 >UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Mycoplasma mobile RepID=Q6KI10_MYCMO Length = 557 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 49/324 (15%), Positives = 103/324 (31%), Gaps = 32/324 (9%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL--SGRGPGEPPPTLFDY 328 E + + E + + + G E++ P L DY Sbjct: 80 LVPTRELSVQVNENIKLFSSNLPITSLAIYGGMRNRESHFSIFKRGLDIIVATPGRLLDY 139 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + L + V + + M + + + Q Sbjct: 140 IKSGKLSLSQVDTVVLDEADLMVDMG-----------------FIDDVKEILKRTKEEKQ 182 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEV---RPVATQVDDLLSEIRQR 442 + SAT + + + T IE +++ +LL ++ + Sbjct: 183 VMLFSATMPKAIMNLVEDFMGKFELIQTESFAKPLQNIEHLAYFYTSSKPVELLQQMLKE 242 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 I +V TKR A+++ L + ++ LH D R I+R + G+ +LV Sbjct: 243 EKI-YSAIVFVKTKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQILVA 301 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+D+ ++S V L+ +GR R GKAI + K + Sbjct: 302 TDVASRGIDIDDISHVFNLNIP-----EDPEIYTHRVGRTGRASKVGKAISFFSKRDFFL 356 Query: 562 AKAIGETERRREKQQKYNEEHGIT 585 + + + +++ + Sbjct: 357 LAKVEKEIKMEIPKKQIQIIEDVI 380 >UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CF86_THAPS Length = 387 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 55/332 (16%), Positives = 98/332 (29%), Gaps = 28/332 (8%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + + + T+ + + + + G Sbjct: 49 WPMIIHIMDQPEIMPGVDGPIGIVLIPTRELAKQVYKYAKLFMEACGGKVCEVSGGNRGT 108 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L L ++V I + R L E L + + E Sbjct: 109 WELTKELKKGCEIIVSTPGRLIDMVKKKGTNLQRVTFVVLDEADRMLDMGFEKQVSSILE 168 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDD 434 QT+ +SAT G + + + V G +D + P Sbjct: 169 NVRPQRQTLLLSATFGKRVERVARSWLKNPVRIAIGRTGASSEHVDQHVMCLPSREAKIQ 228 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-------HGERVRYLHSDIDTVERME 487 L E+ + R LV T+ + L+E + V +H D D +R Sbjct: 229 WLVEMLPVLSPLGRCLVFVATRADCDLLSEKVTNSQALVGNDNSTVVSIHGDKDQRDRNS 288 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR--- 544 I + +L+ ++ GLD+P+V V DA ++ S + IGRA R Sbjct: 289 AIYQFKKNSQAILIATDVAARGLDIPDVMTVINFDA-----AKNIDSHVHRIGRAGRMSK 343 Query: 545 -----NVNGKAILYGDKITPSMAKAIGETERR 571 + G A A+++ E R Sbjct: 344 EDSGQHQRGVAYTLMTDGNADFAQSLVEAFER 375 >UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QWG1_IDILO Length = 474 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 70/460 (15%), Positives = 131/460 (28%), Gaps = 68/460 (14%) Query: 150 DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 P+L L+L A+L RL E+ Y + + P +S Sbjct: 17 SPELLHFNQLNL-------PPALLTRLDEIGYQQ------------------MTPVQSLS 51 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + + + D V D +G+ + + ++A + L Sbjct: 52 LPVILNNTDAVVRA----DTGSGKTTA------------FALTLLAKLEAKSFSPQALVL 95 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + E ++L + + G S I+ S P + D+L Sbjct: 96 CPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGAHVLVGTPGRVLDHL 155 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + + + + M + + QT Sbjct: 156 EQRNVDLSMLTTLVLDEADRMLEM-----------------GFQDSLNAIVKHIPKTRQT 198 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVDDLLSEIRQRA--AI 445 + SAT + P IE A +D + Sbjct: 199 LLFSATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQ 258 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E LV TK +D+ L + V LH +++ +R + I G VL+ ++ Sbjct: 259 PENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDV 318 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ E+ LV + IGR R G AI + + Sbjct: 319 ASRGLDIAELDLVI-----SVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRL 373 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + +T + + P N + + ++ Sbjct: 374 LEDTFAEPIQVKPAPALSNNRPLKANMSTIQVSGGKKDKL 413 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 86/663 (12%), Positives = 191/663 (28%), Gaps = 98/663 (14%) Query: 25 EEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPEN 84 + L+ T+ G ++ +A + ++P +V+ P+ A +++++ + Sbjct: 62 RKDLDSISGDLTISSPIGI-RSAIVAALAK--KKPVVVIVPSSRDAEDFIASVRDWYDGD 118 Query: 85 AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD--------V 136 A Q A + + +T + S R++ + + + Sbjct: 119 A-----------QDVAKLEAWETLPHERLSPRADTVASRIAVFRRLCHPENNTSLFGPIR 167 Query: 137 VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+V V ++ + L G + ++RL E Y R D +RG F VR Sbjct: 168 VLVMPVRSLIQPVVEGIGDIDPLLFECGKELTLEYAVKRLVENAYNRVDLVMERGEFAVR 227 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+F + +R+E F +E++ + F + + E+I Sbjct: 228 GGIIDVFAP-TMTHPVRIEFFGDEIDTIKQFHASDQRTYGNNIASIWATPCRELQITEKI 286 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + + LE + G+E+ L Sbjct: 287 CKRARSLIGSIPN--------------------ADDMLESIANSIPVEGMESLLPAL--- 323 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIG---GMYRGDRARKETLVEYGFRLPSALD 373 + ++ + LP + ++++ + A + G + + Sbjct: 324 --VDRMESVQNMLPKESVIILSDPEKCRRAADDVTATANEFLAASWHVAASGHGSGAPIT 381 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 F +F+ +TI + + + V +Q+ L + Sbjct: 382 FDQANFLDFD----ETISSLELSNHDVWKLTSFGVDNQIYGNIALPASAPQ--EFRGDES 435 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + I V +T L +H + Sbjct: 436 KVSGGITSLVDNGFAVTITAAASGTLARLRRA-----IYATGVH-------------EFT 477 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 + +G + + + D G + L KAI Sbjct: 478 TVRSSI-------SDGFIDNVARIAILTERDLTGKSSASAQL------KTPKRRRKAIDL 524 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + R ++ N I G + + L + +K A Sbjct: 525 MELKPGDFVVHEQHGIGRFVGMKQRN----IAVSGGS-ATREYLVIEYAPSKRNAPNDKL 579 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELFI 670 P + D V + + K+++L G + + +I + L +L R+ Sbjct: 580 FIPTDQLDLVSKYIGAEI--PKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSR 637 Query: 671 AAS 673 + Sbjct: 638 GFA 640 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 70/475 (14%), Positives = 140/475 (29%), Gaps = 41/475 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + EL D + + D LT P + + ++ Sbjct: 640 AFSKDTPWQKELEDAFPYQETA-DQLTTIDEVKADMENPIPMDRLICGDVGFGKTEIALR 698 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + + Q + G+ + SRF + + E Sbjct: 699 AAFKAVQDSKQVVVLVPTTLLVQQHYETFTNRFE--GFPVKVAAMSRFQTSKEIEET--- 753 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + VV +H + + + + Sbjct: 754 -LAGLQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEE--------QRFGVEHKETLKALR 804 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRA 443 + +SATP LE + + + T D + + V A + + I++ Sbjct: 805 TNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKREL 864 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + ++E RV H + + +IRD + DVLV Sbjct: 865 LRGGQVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLV 924 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + + AD+ G + L Q GR R +A Y Sbjct: 925 CTTIIETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHE-RAYAYFL---YDP 976 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 +K + + R + G G + + D+ G + + Sbjct: 977 SKPMTQQSHDRLSTIAQHTALG---SGFDVAMKDLELRGTGNLLGDEQSG-------HIE 1026 Query: 622 NVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 V D+ + + + + + + + +L E A+ D + + A Sbjct: 1027 GVGFDLYVRMVSEAVEKYKEPERVEPVCVTIDLPVE-ASLPVDYIASDKLRLEAY 1080 >UniRef50_A9UTS4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTS4_MONBE Length = 787 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 32/436 (7%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ER+ + + + + R ++ G + Sbjct: 56 FLIPLFERLKNHSARVGIRALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQ 115 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + P + L +V +V + ++ Sbjct: 116 FGDMHTNPDIVVATPGRFLHLIVEMELSLVTTEYVVFDEADRLFEMG------------- 162 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPII 423 + + QT SAT ++ + + + + T L + + Sbjct: 163 ----FAEQLREIMARLPDTRQTTLFSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQ 218 Query: 424 EVRPVATQVDD---LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + D LL +R+ + ++ TK E L E L + Y + + Sbjct: 219 TQFFHCRREDKPALLLYALREIIPKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSL 278 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D R + R G+ +L+ ++ G+D+P + V D F + + + +G Sbjct: 279 DPTARKINVAKFRNGKAPILLVTDVAARGIDIPMLDYVINYD-----FPAAPKLFVHRVG 333 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREK-QQKYNEEHGITPQGLNKKVVDILA 598 R AR G A + + R+ K K ++ G + V Sbjct: 334 RVARAGRSGTAYSFIGNDELPYVVDLHVFLGRKFKPALKRSKREEDGLFGAVPQSVLDED 393 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLEFEEAAQ 657 + K +S V ++ + + + + L E ++ Sbjct: 394 REAVESHLKGSVDLQSLHKVMINSYKNYDRSRPQAATESVKRSKQVEEIGYQLHPEFLSR 453 Query: 658 IRDQLHQLRELFIAAS 673 I + + A S Sbjct: 454 IATGELEKETVLKALS 469 >UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2 Tax=Viridiplantae RepID=Q00W64_OSTTA Length = 543 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 95/323 (29%), Gaps = 31/323 (9%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +V + ++ + L E +R + + G + Sbjct: 113 FVITVLQQLEPTHGEVGAVILCNTRELAYQISHEFERFSTFLGDVTTAVVFGGIPINQQR 172 Query: 309 YSRFLSG-RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L+ P L L + +H + + M R + Sbjct: 173 EQLKLNPPNIVVGTPGRLKALANDGTLNLKKCAHFVLDECDKMLEELDMRSDVQ------ 226 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---- 423 + + Q + +AT + D + + Sbjct: 227 ----------EIFKATPHDKQVMMFTATLSKELRALCKKFMNDPMEIFVDDETKLTLHGL 276 Query: 424 ---EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 V+ + + L+++ N +V++ + + L L E +H D+ Sbjct: 277 VQHYVKLEEAEKNRKLNDLLDSLMFN-QVVIFVSSVSRCKALDRLLRECNFPSIGIHGDM 335 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER+ + + G+ +LV +L+ G+D+ V++V D S + + +G Sbjct: 336 KQEERLACYKSFKDGDKRILVATDLVARGIDIERVNIVINYDMP-----SSADTYLHRVG 390 Query: 541 RAAR-NVNGKAILYGDKITPSMA 562 RA R G A+ + + Sbjct: 391 RAGRFGTKGLAVTFVASSEDTDV 413 >UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteria (class) RepID=A4AFV6_9ACTN Length = 757 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 100/315 (31%), Gaps = 12/315 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + T+ + ++ + G Sbjct: 434 LMENNGGKDRQMGRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQY-KQV 492 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +++ I + + L E + + Sbjct: 493 AALTRGVDVIIATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSE 552 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQR 442 Q + SAT +VD V D I+ + + + D + I+Q Sbjct: 553 GGQKLLFSATLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVLLIEQRDKRAIIKQL 612 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +A + LV T T+ AE++ E+L G LH D++ R ++ L G+ +VLV Sbjct: 613 SAGTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVA 672 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+ + ++SLV DA ++ + GR R GKA I + Sbjct: 673 TDVAARGIHVDDISLVIQADAP-----EEYKTYLHRAGRTGRA--GKAGTVVTLIPRNRR 725 Query: 563 KAIGETERRREKQQK 577 + + E R E + Sbjct: 726 RKMDELLGRAEIDAE 740 >UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD22_CELJU Length = 493 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/383 (16%), Positives = 111/383 (28%), Gaps = 15/383 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L N + LT + +++ S + GE Sbjct: 87 LQQILAQSAVNPRSTRLLILTPTRELARQIVKNAQSLLRFT--SIKVGSICGGEELRYQK 144 Query: 327 DYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L + +VV L E L L LK E Sbjct: 145 ALLRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDA 204 Query: 386 APQTIYVSATPGNY-ELEKSGGDVV-DQVVRPTGLLDPIIE---VRPVATQVDDLLSEIR 440 A QT+ SAT + + IE V + + L+ Sbjct: 205 ARQTLLFSATLEQKGLRHLIKQVITGEAEEIYIEDSSNQIEQQMVLADDDKHKERLAVAL 264 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A ++ +V TK A L L + R LH DI +R ++ R G+ VL Sbjct: 265 LNRAEYQKAIVFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVL 324 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ V LV L+ S + +GR R G+A+ + Sbjct: 325 VATDVAARGLDIDGVDLVINLEM-----AHSGDEYLHRVGRTGRADQPGRAVSFVSASEW 379 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 ++ K+I + + + K + A + + K Sbjct: 380 NLTKSIERYLKVSLQTIQIPGLEASYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTTAGG 439 Query: 620 PDNVPMDMSPKALQQK-IHELEG 641 + + + ++K I + Sbjct: 440 AKKITEKVKVRERERKNIGKRRK 462 >UniRef50_D0N7S6 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7S6_PHYIN Length = 709 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 118/408 (28%), Gaps = 31/408 (7%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + L E RL + + ++++ + Sbjct: 306 ILANLAAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQT 365 Query: 310 SRFLSG--RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L+ P L + + + V + + + + + Sbjct: 366 KSKLAVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELGFVEQVDEI----- 420 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PII 423 F Q SAT E + + D V G + I Sbjct: 421 -----------FAACTHPKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTID 469 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLV--TTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + + L ++Q ++ K A +L L G + +H+D Sbjct: 470 QKLVFVGKEEGKLVAMKQLLQQGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRT 529 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R ++IR R GE VL+ +L+ G+D V++V D F +S S I IGR Sbjct: 530 KEQRDDVIRRFRTGEVWVLICTDLMSRGMDFKAVNMVINYD-----FPQSAVSYIHRIGR 584 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R GKA+ + + I + + + + ++K+ + A Sbjct: 585 TGRNGRKGKAVTLFTEDDMVYLRTIANVMKIS-GCEVPDWMLSLKKASVSKRKELLKAPP 643 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 G R +PK ++ + A+ Sbjct: 644 MRHRINTVSGYDLQRANRLKQMKQGKTTPKKDGEQSESDPAKLEASAK 691 >UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellular organisms RepID=C4M986_ENTHI Length = 723 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 47/352 (13%), Positives = 94/352 (26%), Gaps = 26/352 (7%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + K E + E+ + G Sbjct: 117 KTISFTLPLMERLRAENERKGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGV 176 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + P + D L + + + + M + T + Sbjct: 177 DIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQI 236 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD---QVVRPTGLL 419 + + QT+ SAT + E S + D + G Sbjct: 237 -----------MDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNT 285 Query: 420 D-----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + R ++++ + R +V TK D + + Sbjct: 286 QVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPI-FECQ 344 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH DI +R + + R +F+VLV ++ GLD+ V L+ + + Sbjct: 345 QLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP-----KDIPQ 399 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + GR AR G I + + I + ++ ++ I Sbjct: 400 YVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQIA 451 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 110/394 (27%), Gaps = 33/394 (8%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + L L + L + T D+ + G Sbjct: 63 LQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATIT-GGVAYMNHAE 121 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + L Y+ + + + + M Sbjct: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDM---------------- 165 Query: 370 SALDNRPLKFEEFEALAPQTIYVSAT-PGNYELEKSGGDVVDQVVRPTGL-------LDP 421 QT+ SAT G+ + + + D V + Sbjct: 166 -GFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQ 224 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 LL + + R +V + +L +L E G YL ++ Sbjct: 225 WYYRADDLEHKTALLVHLLK-QPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMV 283 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R E I+ L G +VLV ++ G+D+P+VS V D + G + + IGR Sbjct: 284 QGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSG-----DTYLHRIGR 338 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 AR G AI + + +G K + +E T K+ Sbjct: 339 TARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKV 398 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 K K + K +P V+ + K + Sbjct: 399 LAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKP 432 >UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8H2_9CLOT Length = 480 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/419 (15%), Positives = 122/419 (29%), Gaps = 18/419 (4%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ + E L D L +I S + I + + + + Sbjct: 7 FNLDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICNKIKK 66 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP-PTLFDYLPADGLL 335 L+ + + L++ E+ I G+ P L + Sbjct: 67 LENKLKVLVIVPTRELALQVKEEI---EKIGRLKMIKCSVILGKEPLKNQILELKQGTNV 123 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V I I D + E + + + SA Sbjct: 124 IVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAFFSA 183 Query: 395 TPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLLSEIRQ--RAAINER 448 T N E G + D L + I E + + ++ E Sbjct: 184 TVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVLYKFKPET 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ T TK+ AE L E ++ G V +H DI R II + EF++L+ +++ Sbjct: 244 TIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISSDIISR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+ + +VSLV D + IGR R +GKAI + I Sbjct: 304 GIHIDDVSLVINYDIP-----SDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIEV 358 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + + E K + ++L + + + Sbjct: 359 YTKNKIEPIGI-EYCEKDKIEYQKTIKELLNKYALVENQEQDEFKGEVVKIHISIGKKK 416 >UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelowiella natans RepID=Q3LWE1_BIGNA Length = 378 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 58/372 (15%), Positives = 108/372 (29%), Gaps = 32/372 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + +++ ++L L G+ + T Y+ + + L L Sbjct: 31 YYCSKIQSITLIPLLKGRDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTREL 90 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 L T+ + G G + + + G P + L L Sbjct: 91 SIQIRNVFNVLNIYTKNSITSC-HGGRWLGEDLKNLKKNFHGIVGTPGRVLHLLQIGSLA 149 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + + Q I SAT Sbjct: 150 ITKIRTFVLDEAD-----------------ILMNKNFKIDIFNIYRYLNSKVQIIICSAT 192 Query: 396 PGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 Y L+ + ++D V + + L +I + + + Sbjct: 193 IPLYTLQAASKFLLDPVMILMRKEEINIDKIKQFYISVFIEENKLLALLDIFETLLVG-Q 251 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VL+ T R A + L + V +H + ER I ++ R G+ LV ++ Sbjct: 252 VLIFCNTIRKANWIHNKLLANNFNVGLIHGRVIQKERTNIFKNFRDGKTRALVTTDVSSR 311 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GL++PEVSLV D + + IGR R G AI + K + Sbjct: 312 GLNIPEVSLVINYDIPTF-----KDVYLHRIGRTGRFGRQGVAINFAKLRDLHNIKNLEV 366 Query: 568 TERRREKQQKYN 579 ++ Sbjct: 367 HFSITIEELVKF 378 >UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encephalitozoon cuniculi RepID=RRP3_ENCCU Length = 400 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 113/391 (28%), Gaps = 44/391 (11%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 ++ F + +H + + EL ++++ E + Q Sbjct: 43 AVSQTGSGKTLAFVLPIVSHLLQKNRSFYCLVVAPTREL---------SSQIAECFNMFQ 93 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY-LPADGLLVVDESHVTIPQI 347 T + G ++ P + ++ L + + Sbjct: 94 ATG-LRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIAEHVLKTKSFRTERVRKFVLDEA 152 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + D QT+ +AT + + S Sbjct: 153 DRFFEQDFVEDLE-----------------TIIPSLREKRQTLLFTATMSDEISKLSSSI 195 Query: 408 VVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + L + + L+ + + V+V A Sbjct: 196 LKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELL--EMSQGMSVIVFVSMCVTAR 253 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ L G LH ++ +R E +R + F+VLV +L GLD+ V LV Sbjct: 254 VMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGSRGLDISHVDLVIN 313 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D K G + I +GR AR G AI + + I T ++ ++ K Sbjct: 314 FDVPKSG-----KDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIEFTLEKKLEEFKMM 368 Query: 580 EEH-GITPQGLNKKVVDILALGQNIAKTKAK 609 +++ G + + + + + K + Sbjct: 369 KKNFGTICARIEEAIQEAQETLKEERKRNRR 399 >UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=uncultured marine bacterium 66A03 RepID=Q4PNH7_9BACT Length = 659 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 59/427 (13%), Positives = 125/427 (29%), Gaps = 36/427 (8%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 + S F I T + + + + +A R++ L+ K L Sbjct: 35 DSNSDLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRPKIPLAIIIAPTRELALQVRKEL 94 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 E + + QF G E + P L D++ L + D Sbjct: 95 EWLYVRTKAQFA---SCVGGMDPRAERRTLESGAHIVVGTPGRLRDHIERGVLRLSDIKA 151 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 V + + M + +T+ SAT + Sbjct: 152 VVLDEADEMLDM-----------------GFREDLTFILGKAPVERRTLLFSATVPTQIV 194 Query: 402 EKSGGDVVDQVVRPTGLLDP-------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + D V + + +++ +R +V Sbjct: 195 KLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSG--AIVFCN 252 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+ L L G V L ++ ER ++ +R G+ +V V ++ G+D+P Sbjct: 253 TRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAARGIDLPN 312 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 + LV D +S +++ GR R G +++ + + ++ Sbjct: 313 LELVIHADLP-----QSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFKKVERMFDSNGIEP 367 Query: 574 KQQKYNEEHG-ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 I ++ ++L + ++ + + + +E S A Sbjct: 368 IWVNPPSADQIIEKDRISLLKSELLTSPADASEVEIAQKILQKFPIEAIASAFVRSQMAG 427 Query: 633 QQKIHEL 639 + EL Sbjct: 428 KSAPEEL 434 >UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II protein n=2 Tax=Ostreococcus RepID=A4RSU9_OSTLU Length = 417 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 102/378 (26%), Gaps = 38/378 (10%) Query: 256 IVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + A E ++ E+ + + G + S Sbjct: 61 VHVLSVDPHGVFALCLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSKR 120 Query: 315 GRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L ++ + + + + + + Sbjct: 121 PHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYL--------- 171 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEK-------SGGDVVDQVVRPTGLLDPIIE 424 QT+ SAT + + + Sbjct: 172 --------LTNLPQKRQTLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYC 223 Query: 425 VRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 P + L+ +R+ + R ++ T + E ++ L G LH+ Sbjct: 224 FMPEKVKDTYLVHVLRELVSSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQR 283 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + +LV ++ GLD+P+V LV D R I IGR A Sbjct: 284 DRHSTLNAFKSTMVKILVATDVAARGLDLPDVELVVNYDIP-----SDPRQYIHRIGRTA 338 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQ--QKYNEEHGITPQGLN-KKVVDILAL 599 R G+AI + K I + ++ + + + + + +K+ + Sbjct: 339 RFHATGQAISLVTQYDVGKIKKIEKHLGHELEEFHVQEADVNKLVGEVFASRKMAKLHMA 398 Query: 600 GQNIAKTKAKGRGKSRPI 617 + + K + Sbjct: 399 SPGGFDEQLSAKKKRQSA 416 >UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma florum RepID=Q6F0U0_MESFL Length = 666 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 16/333 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 +E NK + + T+ + G + ++ G Sbjct: 55 FVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQI 114 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L + VV + + D R L E L N E + Sbjct: 115 KRLKDSQI-VVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSP 173 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQ---VDDLLSEI 439 Q SAT ++ + + + V ++ I + T+ +DL+ ++ Sbjct: 174 DVQIGLFSATTSPKVMQIANDYMNEYDVIEIENQIEVNANITNTFIFTKGFSKEDLIVKV 233 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ +R +V + TK + + + LE G R ++ D +R I R E V Sbjct: 234 FKKHK-PKRAIVFSNTKNHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISV 292 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-DKI 557 LV +++ G+D+ V V D E + IGR RN G +I + ++ Sbjct: 293 LVATDVVARGIDITGVDYVINYDVSMED-----EHFVHRIGRTGRNNTKGDSITFVQNQN 347 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 K I + + + +E + Q Sbjct: 348 VLRQIKGIEKNFNLIIDEMQISEYGEVDKQEGR 380 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 88/633 (13%), Positives = 201/633 (31%), Gaps = 79/633 (12%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + GS + + + +++ + A ++Y E+K N Sbjct: 12 VVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNN----------S 61 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRDVVVVASVSAIYGLGDPDLY 154 + P+ + S + I R M + ++ +++ S+S P + Sbjct: 62 KVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASF 121 Query: 155 -LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + L G +D L E Y + F++G F +RG +IDI+P S +A R Sbjct: 122 IQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGS-KVAFR 180 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++LFD E++ + + + + + I I P V + A++++ + Sbjct: 181 IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGD---- 236 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + Y SGIE Y + +L+DYLP Sbjct: 237 -------------KALNSTIATYIQNNEYFSGIEFYLPLFY-----DKLSSLYDYLPPST 278 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ-TIYV 392 + + ++ I + R L R +E + + Q Sbjct: 279 NIHLVDN--ITNSIEAFSDEVKFRYNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIK 336 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D ++++ L +P +++ + + ++V+ + Sbjct: 337 WFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDK------------SNFDKVIFS 384 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T + AE L E+L + + S + E +E L+ +EG+ + Sbjct: 385 TDSNGRAELLLEHLNKLNLN---IQSCKNFNEAIEASTKF------CLIIS-PFQEGMII 434 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 + + I +AD + + + + + + Sbjct: 435 -DKKIALITEADLFPEHSYNSTKV------------------SQHDHHPTVDLKDLTDLK 475 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + +HGI + + + I A PI + + + S Sbjct: 476 PGMHVVHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTE 535 Query: 633 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +++L + + ++ + L ++ Sbjct: 536 KIALNKLGTDKWKKQKEKTIKKIIDVAANLLEI 568 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 49/420 (11%), Positives = 119/420 (28%), Gaps = 40/420 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P + + ++ A + + Q + Sbjct: 612 DMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFT 671 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 ++ + LF+ L + ++ +H I Sbjct: 672 NTAVN------IEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLII 725 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + + + + +SATP L + + D + + Sbjct: 726 DEE--------HRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPP 777 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--VRY 475 + V ++++ + + ++ + E L+E R + Sbjct: 778 AKRLSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAI 837 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E +++ D + ++ +L+ ++ G+D+P + + I DA+ G + L Sbjct: 838 AHGQMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQ----L 893 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + P+ A + +R + G D Sbjct: 894 HQLRGRVGRSHHQ---AYAYMLIPNEASITKDALKR----LEAISNTESLGGGFTLANHD 946 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + G + + D + +++ L + I L + L EE Sbjct: 947 LEIRGAGEILGEEQSGN-------IDGIGLNLYMDLLDKTIANLR-----AGKELNIEEV 994 >UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q965K2_CAEEL Length = 970 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 62/423 (14%), Positives = 111/423 (26%), Gaps = 27/423 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLENNKLL 281 L F+ + +I + + + + LE Sbjct: 319 LKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGP 378 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 L + ++ E + ++ G L +VV Sbjct: 379 IAVILAPTRELAMQTYKEANKFAKP--LGLKVACTYGGVGISEQIADLKRGAEIVVCTPG 436 Query: 342 VTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + G + R L E + + +K QT+ SAT Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFP 496 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + V G + + + LL + ++ Sbjct: 497 RHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIV 556 Query: 451 VTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + A+D+ + L G V LH ID +R I D + G VLV ++ G Sbjct: 557 -FVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARG 615 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+ + LV D + +GR R G A + K GE Sbjct: 616 LDVKNLILVVNYDCPNH-----YEDYVHRVGRTGRAGRKGYAYTFVLPE--HQEKMAGEI 668 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 R E + ++ A G+ + G E + Sbjct: 669 CRAFETAGCKPPAD--LKAMFERFKSEMAAEGKEVKLGGKGFEGSGYKYDEGEAEADANK 726 Query: 629 PKA 631 + Sbjct: 727 KRM 729 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 50/363 (13%), Positives = 103/363 (28%), Gaps = 41/363 (11%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I ++ RI + ELA + L ++ Sbjct: 44 QAQTGTGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIA-- 101 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + P L D L + + + T+ + Sbjct: 102 -------LILGGVSYEKQKAALNSGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADE 154 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + N +K Q + +AT + S Sbjct: 155 LLKIG-----------------FYNEIIKIMNKLPKKRQNFFFTATFDEKTKKLSQEITN 197 Query: 410 DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + T +D V ++ L+ + ++ TKR ++L Sbjct: 198 EAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFL--DFKKPTASVIFGRTKRRVDEL 255 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+E G + D+ +R ++ + + +++V +++ G+D+ V LV D Sbjct: 256 ASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMARGIDVSHVDLVFNFD 315 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 IGR R G+AI + K I + K+ + Sbjct: 316 LP-----EEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKIMTETKSIIKEISIPSK 370 Query: 582 HGI 584 + Sbjct: 371 EHL 373 >UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP Length = 398 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 107/338 (31%), Gaps = 15/338 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L + L++ L + ++ + I + + G + Sbjct: 56 YLLPIIQNLVKKKTAFFSIILVPSRELAFQIASYFEAFGNI--FGIKIVVLVGGLENFSQ 113 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYR--GDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + +++ I + + + + E Sbjct: 114 KALLSLNPHILICTPGRLIEHLEKFLKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSEL 173 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDDLLSE 438 Q+++ SAT ++ + V ++ + ++ D Sbjct: 174 PKNKQSLFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFI 233 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +LV T++ AE T + G YLH ++ +R+EI++ R G+ Sbjct: 234 YLCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIK 293 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 +L+ +L GLD+P V LV D + + +GR AR +G+ I + Sbjct: 294 ILIATDLASRGLDIPNVDLVLNYDLPHL-----AKEYLHRVGRTARAGKSGRTINIVTQY 348 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + I +++ + H + + K+ Sbjct: 349 DIHLCQKIETLVQQKFILLNFKLAHVLILEQTVDKMKQ 386 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 88/644 (13%), Positives = 177/644 (27%), Gaps = 83/644 (12%) Query: 28 LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 L + +G +A R +++A ++ + F PE ++ Sbjct: 32 LASKEGQVYIER-SGMATRCRLAAEAFTQGRTVVLVARDREEYNSARALLTLFTPELSLA 90 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY- 146 + T + RL+A + + R +V SV ++ Sbjct: 91 DKSVSEPQWNSPCL-----TLPPLSQWQDRASWSARLAALYGLAQGRPRCIVCSVESLLL 145 Query: 147 GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAE 206 D + L L G +L + E Y R + G RG+++DIFP Sbjct: 146 RHIPLDFFAARNLDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGEMARRGDILDIFPTG 205 Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 +R+E F + ++ + +FD + + + + P + + + A E Sbjct: 206 HVK-PVRLEFFGDTLDEMRVFDAESQRSLQGCDELVLLPASPLALDAKSLAAARERCDRM 264 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A R E + ++ L P Sbjct: 265 FAEGRISENE----------------------CYSFKKSLDGGGLGLLPGSVLASPSLFE 302 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+LP D L ++ + G KE L LP L + A Sbjct: 303 DWLPKDSLWLLPGE---SDSADALRDGRLNLKERLEAADAPLP---QPASLALRKSSQPA 356 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE----IRQR 442 P + + + L I++ P+ D +++ Sbjct: 357 PWNTFQRVYAEPLVMGVEERGLDLPER----PLHSFIDLFPLPGAQDRPWQHLAAGLKEW 412 Query: 443 AAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + + VL + + A+ L L E V L + ++ R G LV Sbjct: 413 KSSRRQIVLSFSSGRSRAKFL--KLAEQDGIVPALRYAPEQRGLFALVSPFRSGAE--LV 468 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++L G D+ + R + + + Sbjct: 469 WDDVLVLGEDI---------------LYPKAE-------KTPRVSSRV---FKGLDSFDD 503 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K R ++ H + + + G++ A G + Sbjct: 504 LKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSGRDKLYVPADRLGLIQRF---- 559 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + ++ + L G + + +I L ++ Sbjct: 560 -----KGTEGVEPALDRLGGAAWVAGKEKARKAIEKIAADLVEM 598 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 60/431 (13%), Positives = 120/431 (27%), Gaps = 38/431 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q Q + Sbjct: 648 PMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRARLAGFPVNV 707 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ LS P + A + ++ +H + + + Sbjct: 708 GL------LSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDEE--- 758 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + + ++ATP L+ S + + + T D Sbjct: 759 -----QRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPV 813 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 V + D++L + + +V + E + EY+ R H + Sbjct: 814 ASAVLRKDDNVLRKVLEREIEREGQVFWVYNRVQGLERVAEYVRGLVPDARVGMAHGQMS 873 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + GE DVLV +++ GLD P + + + A G + L Q GR Sbjct: 874 EAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGLGQ----LYQLRGR 929 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + A+ + R + + G + D+ G Sbjct: 930 VGRSDRQAYAFFVVP----DAERLTAVAEERLRII---LDMDYLGAGFQVAMEDLRLRGA 982 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF---EEAAQI 658 + + V +D+ + L++ + L+G E A Sbjct: 983 GNILGEVQSG-------HMCRVGLDLYLEMLEEAVGRLKGTPESLVSETELTLGLPAHIP 1035 Query: 659 RDQLHQLRELF 669 + RE Sbjct: 1036 ASYIDDGRERL 1046 >UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Corynebacterineae RepID=Q0S0C5_RHOSR Length = 632 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 81/305 (26%), Gaps = 12/305 (3%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K L + ++++ L +G + G P D L ++V Sbjct: 98 KRPRALVLVPTRELAFQVVDSLNSYAGAMGL--TVRPAVGGTPFSKQVDQLRRGVDILVA 155 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + D L E Q + SAT Sbjct: 156 TPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQRLLFSATLD 215 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + D V T + E + + + + A + R ++ Sbjct: 216 REVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEIGARDGRTIMFAR 275 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK E +T+ L G LH +R ++ + G VLV ++ G+ + Sbjct: 276 TKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVAARGIHVDG 335 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 + LV +D + + GR AR G + + + Sbjct: 336 IDLVVHVDPP-----ADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAGVDA 390 Query: 574 KQQKY 578 Sbjct: 391 TAVPV 395 >UniRef50_Q0IH66 Ddx10 protein n=6 Tax=Euteleostomi RepID=Q0IH66_XENLA Length = 663 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 62/412 (15%), Positives = 121/412 (29%), Gaps = 27/412 (6%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L + ++ L ++ + + L +S L G+ Sbjct: 131 PALECLYRQQWTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGL--VIGGKDLKQ 188 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + + ++ + + + L E L + E Sbjct: 189 ETACIHRTNI-LICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIEN 247 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQVD 433 QT+ SAT + + + D L+ V + +++ Sbjct: 248 LPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQQKIN 307 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRD 491 L S IR ++ +V + + + L G V LH +RME+ D Sbjct: 308 LLYSFIRNHLK--KKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYND 365 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + VL ++ GLD P VS V LD + I +GR AR G Sbjct: 366 FIRKKSAVLFATDIAARGLDFPAVSWVLQLDCP-----EDANTYIHRVGRTARYKEGGEA 420 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 L PS K + + ++ + + + ++ LA Q++ +T + Sbjct: 421 LLVLL--PSEVKGMAKQLEEKKVPINEIKINPEKLLDVQGRLEAFLAQEQDLKETAQRCF 478 Query: 612 GKSRP--IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + D+ L L + + L +A + Sbjct: 479 VSYLRSVYLMKNKEVFDVFKLPLTPYAQSLGLAVAPRVRFLLKAQATSASKE 530 >UniRef50_A8L2W4 DEAD/DEAH box helicase domain protein n=3 Tax=Frankia RepID=A8L2W4_FRASN Length = 446 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 89/334 (26%), Gaps = 12/334 (3%) Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 L AR + T+ + +N++ +++ G Sbjct: 21 TLAFGLPLLARLATTGAARPRQPRGLILVPTRELAQQVNDVLAPLTR-ALGLWMTPVYGG 79 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLK 378 L LVV + D L E F Sbjct: 80 TSISRQISALRRGVHLVVATPGRLTDLVERDACILDEIEITVLDEADFMCDLGFLPAVKA 139 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDD 434 + Q + SAT G + + V+ + + + Sbjct: 140 LLDMTPSDSQRLLFSATLDREVEVLVRGYLPEPVLVAVDPEVSQVSTLARHAMESVDRTA 199 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + A R LV T+R A+ + + L E G LH + R + Sbjct: 200 QLRLVTALACGAGRTLVFVRTQRDADRVAQALTEAGVPAEPLHGGMPQGARTRALAGFTD 259 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G + VLV ++ G+ + + LV G ++ GR AR A + Sbjct: 260 GFYRVLVATDVAARGIHVDGIGLVLH-----LGPPEDAKTYQHRGGRTARAGADGADVLV 314 Query: 555 D-KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 A+++ + + I + Sbjct: 315 TVPAERGKARSLLRAVGIPTQPVPTQPDDPIVAE 348 >UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Trichomonas vaginalis RepID=A2DVG1_TRIVA Length = 478 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 109/361 (30%), Gaps = 38/361 (10%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F+I + ++ + ELA + + + Sbjct: 135 AQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRIPGL--- 191 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 D+ + P D + + L V + + + Sbjct: 192 ----DIAIFIGGAQRVVDAQARAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEAD 247 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + + E+ Q + SAT + Sbjct: 248 QMLSDNFI-----------------EQVNDIMEYFPEDVQILLFSATISQSIFHIMNTFM 290 Query: 409 VDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + + D L +I +I ++ ++ +K + Sbjct: 291 NDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLLDIYGSVSI-QKAIIFANSKNAVDY 349 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 ++E L++HG V +H+ +D +ER I+RD R G VL+ +LL G+D+ +V+LV Sbjct: 350 ISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTARVLISTDLLARGIDVQQVTLVINF 409 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + I IGR+ R G AI D ++ + + + + Sbjct: 410 ELP-----KKLEQYIHRIGRSGRYGRKGVAINICDHEDMNVIEMLKNHYMTTINELPSDI 464 Query: 581 E 581 E Sbjct: 465 E 465 >UniRef50_A1SQH8 DEAD/DEAH box helicase domain protein n=2 Tax=Actinomycetales RepID=A1SQH8_NOCSJ Length = 507 Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 86/310 (27%), Gaps = 12/310 (3%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + L + ++ L + + G G+ P L + Sbjct: 77 AQARKPRALVLAPTRELVNQIEEALKPLARTAGLTTQTVFGGVGQNP--QVQGLRRGADI 134 Query: 336 VVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ IG + + L E + + Q + SA Sbjct: 135 VLACPGRLEDLIGQGHCDLSQVEITVLDEADHMADLGFLPGVRRIMDRTPRDGQRLLFSA 194 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLV 451 T + + V + + + + + + + R +V Sbjct: 195 TLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVLHVAREHRVPVLVDLTSAPGRTVV 254 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T TK A+ L L + G LH ++ R + G LV ++ G+ Sbjct: 255 FTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLVATDIAARGIH 314 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + +V+LV D E ++ + GR AR G I + + Sbjct: 315 VDDVALVVHADPPVE-----HKAYLHRSGRTARAGARGTVITLMTDDQVRDVRDLTRAAG 369 Query: 571 RREKQQKYNE 580 + + N Sbjct: 370 IKPTTTRING 379 >UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya RepID=DBP5_YEAST Length = 482 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/389 (17%), Positives = 132/389 (33%), Gaps = 37/389 (9%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 F + +P P + + + + R + + + Sbjct: 111 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 170 Query: 286 LTQRTQFDLEMMNELGYCSGIENYS---------RFLSGRGPGEPPPTLFDYLPADGLLV 336 + + LE++ E+G + I + + ++ + P T+ D + + + Sbjct: 171 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQL 230 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + M L ++ ++ + F Q + SAT Sbjct: 231 QKIKIFVLDEADNMLDQ----------------QGLGDQCIRVKRFLPKDTQLVLFSATF 274 Query: 397 GNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + V + + + D+L+E+ I + Sbjct: 275 ADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSI 334 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + TK+ A L L+ G V LH D+ T ER +I D R G VL+ N+L G Sbjct: 335 I-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 393 Query: 510 LDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKAILYG-DKITPSMAKAIG 566 +D+P VS+V D + + I IGR R G AI + DK + ++ AI Sbjct: 394 IDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQ 453 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + + + + + KKV+ Sbjct: 454 KYFG-DIEMTRVPTDDWDEVEKIVKKVLK 481 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 116/412 (28%), Gaps = 35/412 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + I+ A Q E Sbjct: 544 KKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHFNTLRER 603 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + L + L + VV +H + Sbjct: 604 FADYPIHT------ALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLI 657 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + +SATP L + D + T Sbjct: 658 VIDEEQRFGVLQKEKWKEKFRFI--------DVLLLSATPIPRTLYLAMAGARDMSLIET 709 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 + V + ++ I + +V R E + L+ ++ Sbjct: 710 PPPNRFPIETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKI 769 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H + E E++ G+ DVL+ +++ GLD+P + + I AD G Sbjct: 770 DIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLA---- 825 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ Y + P I ++R K + + + G G + Sbjct: 826 DLYQLRGRVGRSNQK---AYAYLLLPRDL-FIQSDAKKRIKAMQEHSQLGT---GFQIAL 878 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 D+ G ++ ++ ++ K L++ I +++G + Sbjct: 879 RDLEIRGAGNLLGTSQSG-------HIASIGFELYCKLLKKAIQKIQGKETE 923 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 98/245 (40%), Gaps = 26/245 (10%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDG---LAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 ++ +++ D P L + L + + + SG++F +A+ + + P +V Sbjct: 27 EMTFSYEKWLDHP-----LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRGPLLV 81 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A N ++ ++ + P +P + + + Sbjct: 82 IAENIKKTNEIALGLECW---------------GSPYLILPEVEPVPAESL-PDPTFLAE 125 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RLS ++L+ +++ + A+ P+L + L L V D++A++ +L Y Sbjct: 126 RLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKLVTAGY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R D RG F VRG +ID F +S LR+E + L FDP+T + + + Sbjct: 186 ERVDSVDCRGQFAVRGAIIDTFCWDS-CYPLRMEWEGNRLISLRQFDPITQRSFKPLAQA 244 Query: 242 TIYPK 246 + Sbjct: 245 HLCFF 249 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 37/237 (15%) Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + L + + V++ + L E L G Sbjct: 302 FYQERRWQLFLEALGRWIEKQWEVVIFVNNEGEESRLKEILNNQGISTE----------- 350 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI--QTIGRAA 543 +L + L G PE L + DA+ G ++++ L+ Q Sbjct: 351 ------------KILFSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILLRSQQKNDYF 398 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R G I + + + + + + T +G N ++V++ Q Sbjct: 399 RAPLGSDI-FEQWKEGDIVVHLQKGICKFKGI--------KTIEGTNTEMVELEFDQQAK 449 Query: 604 AKTKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + + + A+ L A + Sbjct: 450 LYVPIDQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAER 506 >UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Saccharomycetales RepID=DRS1_YEAST Length = 752 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 52/418 (12%), Positives = 114/418 (27%), Gaps = 22/418 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + R L + + Sbjct: 257 IQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAI 316 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YR 352 ++ + + + G L + +V+ I I + Sbjct: 317 QVADVGKQIARFVSGI-TFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFN 375 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D + E L + + Q + SAT + + V Sbjct: 376 VDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPV 435 Query: 413 VRPTGLL--------DPIIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDL 462 + +R LL + ++ +R++V K A L Sbjct: 436 RIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRL 495 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + G V LH + +R++ + + E VL+ +L GLD+P++ +V D Sbjct: 496 RIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYD 555 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYG--DKITPSMAKAIGETERRREKQQKYN 579 +S + +GR AR G+++ + S+ +A ++ + Sbjct: 556 MP-----KSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKS-LTQG 609 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 + G + + + L N K + + + L+ K Sbjct: 610 KALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKE 667 >UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q2K3_9ACTO Length = 554 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 100/405 (24%), Gaps = 38/405 (9%) Query: 178 ELQYARN--DQAFQRGTFRVRGEVIDIFPAE-----SDDIALRVELFDEEVERLSLFDPL 230 + Y TF G ++ A ++ + + + Sbjct: 50 DAGYDEAAATVVSDDLTFADLGLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVL--G 107 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 G+ S + P + + L L LT Sbjct: 108 RGRTGSGKTYAFVLPLIARLATSGT--RRRPNQPRALILAPTRELATQIQASISPLTDAF 165 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 M G G + P L D++ A + + + M Sbjct: 166 G-LRTMTVFGGVGHGPQITGLRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHM 224 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + E Q + SAT + Sbjct: 225 ADLGFLPAVRRL-----------------LEATPATGQRLLFSATLDAGVDVLVKRFMRS 267 Query: 411 QVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 V + + Q D L + AA R LV T TK A+ LT+ L Sbjct: 268 PVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDLAAAPGRTLVFTRTKYGAKSLTKKLI 327 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G LH ++ R + G LV ++ G+ + +VSLV D E Sbjct: 328 AQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVATDIAARGIHVDDVSLVIHADPPIE- 386 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 ++ + GR AR G + + + Sbjct: 387 ----HKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVRDLTRKAGI 427 >UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S107_OSTLU Length = 478 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 58/366 (15%), Positives = 100/366 (27%), Gaps = 20/366 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L + L + ++ NE + G F L A Sbjct: 120 QRPLTKREGPIALVLAPTRELASQIANEAHKFTKFGVSGARCCAIFGGVSKRDQFKKLRA 179 Query: 332 DGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + + R L E L + + Q Sbjct: 180 GAEIVVATPGRLVDVLCMKNSTNLRRVTYLALDEADRMLDMGFEKIVRSICQAVRPDRQC 239 Query: 390 IYVSATPGNYELEKSGGDV-VDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQ 441 + SAT + + D V G + ++ V + L E Sbjct: 240 VMFSATMPAAMQRLARDVLARDAVTVSIGNVGGANEDVRQVVYVFEDDARRAAWLFENLG 299 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A + +V K E+L L G + LH D+D +R ++ + VLV Sbjct: 300 DAVDEGQAIVFVNHKSSVEELVNELATRGIKAVALHGDLDQAQRQFAMKAFKSEHAHVLV 359 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITP 559 ++ GLD+ + V R + + IGR R +G+A Sbjct: 360 ATDVAARGLDVEAIKTVVN-----FHPARDMSTHVHRIGRTGRAGALDGRAYTLFTARDS 414 Query: 560 -SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 A+ + + + + +G K G K GRG Sbjct: 415 AKFAQQLEQNLEAAGQ--PVPLDLKALARGTYNKRPRSDHGGDAPRHGKVGGRGLGFTSH 472 Query: 619 EPDNVP 624 + Sbjct: 473 HRPSAG 478 >UniRef50_A8R0I3 ATP-dependent RNA helicase (Fragment) n=7 Tax=Streptomyces RepID=A8R0I3_9ACTO Length = 626 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 102/361 (28%), Gaps = 19/361 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ +++ G + L G L ++V Sbjct: 1 ILTPTRELAMQVSDALQPYG-DVLGLKLKVVCGGTSMGNQIYALERGVDILVATPGRLRD 59 Query: 346 QIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 I DR + L E + + Q + SAT N Sbjct: 60 IIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLFSATLENEIDTLV 119 Query: 405 GGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 +VD V + + + D AA R ++ T+ A+ Sbjct: 120 KRYLVDPVTHEVDPSAGAVSTMTHHVLVVKPKDKAPVTAAIAARKGRTIIFVRTQLGADR 179 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + E L + G R LH + R + D + G +VLV ++ G+ + + LV + Sbjct: 180 VAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAARGIHVDGIDLVLNV 239 Query: 522 DADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + + GR AR +G + + E + Sbjct: 240 D-----PAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAG-------VDA 287 Query: 581 EHGITPQGLNKKVVDILALGQNIA-KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 I G + +A+ S E + + + +Q++ EL Sbjct: 288 SRHIVGGAGAFDEDVARITGARSLTEVQAESAANSAKQAEREVEQLTRELERVQRRATEL 347 Query: 640 E 640 Sbjct: 348 R 348 >UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 n=1 Tax=Hydra magnipapillata RepID=UPI00019270D8 Length = 599 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 126/387 (32%), Gaps = 29/387 (7%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++ P + L L + + L++ + G I+ Sbjct: 232 FLLPIIWAAISQSIKPIALVIAPTRELCIQIEEQAKALSKSIPNFSTALLIGGNPLPIQL 291 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + P L D L + D+ + + E L Sbjct: 292 HRLKHKIQLVIGTPGRLNDILQNYKDYLCF---------------DQIKIVAIDEVDVML 336 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 +N+ + PQ + SAT + + + V+ G + Sbjct: 337 HMGFENQIKSIIDAVPWKPQMMMFSATIPPAIETLAQSMMENPVMVSVGISGLPNAHVKQ 396 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDI 480 ++ A++ L + + +L+ +K+ A+ L + L ++ + +HSD Sbjct: 397 LVLWVEEASKRKKLFTILNDSKYFTPPMLIFVESKKGADLLCDALTQKFSLKCESMHSDK 456 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER I+ + G FD+LV N+L G+D+P V V + D F S + +G Sbjct: 457 TQSERTLIVNNFLTGSFDILVSTNILGRGIDLPNVRQVLLFD-----FPNSIEEYVHQVG 511 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 RA + + G +I + + + + E + + Q L + + + Sbjct: 512 RAGQLHSYGLSIAFINNSNKHIFLDLKELFETTKGNLPFEILSSPYLQTLRETRLKLYKE 571 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMD 626 G+ K S+ +++ Sbjct: 572 GKLKRKHGIDEDLNSQNLLQILTKSYK 598 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 97/313 (30%), Gaps = 11/313 (3%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A LE ++ + + T+ + + G + L +P Sbjct: 55 FAIPIIQNLEIDERSPQALVLTPTRELALQIQQDFDRIGTFKKIKTL-PIFGKQPFKFQK 113 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L +V+ + + + + L E L + ++ Sbjct: 114 EDLKQRCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPK 173 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPVATQVDDLLSEIRQR 442 T SAT S + T + + E V + +L Sbjct: 174 KHVTCLFSATYPAVIQRMSKKYLYKPAKVDLTSTNKPNILEEAYHVNEEHKELFLLHLLA 233 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 E ++ T+ + + LE++ V +H + ER+ +R + G+ +LV Sbjct: 234 LKKPESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVC 293 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ G+D+ +V ++ D + IGR+ R + G AI ++ Sbjct: 294 TDVASRGIDVFKVEMIINYDMPSP-----VETYTHRIGRSGRVDEQGLAISLVNEYDGVR 348 Query: 562 AKAIGETERRREK 574 + + E Sbjct: 349 KEKLEEYLGYNLP 361 >UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RXX8_OSTLU Length = 437 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 98/378 (25%), Gaps = 44/378 (11%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L L +E ++ T G + + Sbjct: 76 ARPKVLVLAPTRELALQIHMETRKFIFGTPLWCAC-AYGGSSIKPQLEELAFAPEIIVAT 134 Query: 322 PPTLFDYLPAD--GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L + D + + + + + M + + + +P Sbjct: 135 PGRLLSMVREDARYVDLSGVQTLVMDEADRMLDMGFEPQLNELLGDYGIP---------- 184 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----------VVRPTGLLDPIIEVRPV- 428 QT+ SAT L + + V + ++ P Sbjct: 185 ---AKNERQTLMFSATFPPQVLRLASYYMRAPPHAARVICGRVGSTVANIKQVLIETPHL 241 Query: 429 -ATQVDDLLSEIRQRAAIN-------ERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHS 478 ++ LL + A L+ K AE L + + E V LH Sbjct: 242 REQKLPYLLRVLEAVEAKRENDGEDVGLTLIFCKQKGTAEWLRQQIVEVTPSLAVEELHG 301 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + R+ + G +LV ++ GLDMP+V+ V D I Sbjct: 302 SLTQGARLRALDAFATGAAKILVATDVAARGLDMPDVNHVINFDMP--TKKSEFDDYIHR 359 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 IGR R G A + E + EE G + D Sbjct: 360 IGRTGRAGRKGIATSFYIPGFAEDIGNGPIYENLKL----VFEETQNELPGWFLQSRDAR 415 Query: 598 ALGQNIAKTKAKGRGKSR 615 I+ +G R Sbjct: 416 GSVGGISSAYDRGFKGGR 433 >UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DL95_9BACT Length = 482 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 140/441 (31%), Gaps = 44/441 (9%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + P + ++A + + L L E +L + + G Sbjct: 59 FAIPALQHLRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVK 118 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 S + P L D L + + I + + Sbjct: 119 KSLHGAQVIS-ATPGRLIDIKEQGLLNSNCINMLVIDEADRL-----------------F 160 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIE 424 + + QT+ SAT + S + V+ G + + E Sbjct: 161 DMGFREAVTSILKDLPKSVQTVLCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEE 220 Query: 425 V-RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V + L+E + N++V+V K +++ E L++ G V LHS ++ Sbjct: 221 WAVSVYPENHLKLTEKLLKKHKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKN 280 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R + ++ R + +LV ++ G+D+P + LV D + GR A Sbjct: 281 VRNQALKLFRDKQVRILVATDVASRGIDIPGLPLVVNYDLP-----YDFPDYVHRAGRTA 335 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQ---KYNEEHGITPQGLNKKVVDILAL 599 R +G I + + K+ E R+ + + +E ++ + L KK D + Sbjct: 336 RAGKSGLVISFYNGRKEKTIKSFEERTGRQMLRVSFNQIMDEKQVSQKPLAKKKQDSVRK 395 Query: 600 GQNIA--------KTKAKGRGKSRPIVEPDN----VPMDMSPKALQQKIHELEGLMMQHA 647 NI K +G D+ + +K L L + + Sbjct: 396 KANIRDCSRIIVYGGKKQGLNNGLLKKILAKNCGLDDSDIGYIEVNEKHTLLGVLREKSS 455 Query: 648 QNLEFEEAAQIRDQLHQLREL 668 + L + +I + +L Sbjct: 456 RVLTTLQKTKISGHILKLELR 476 >UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AWJ7_BABBO Length = 783 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 116/394 (29%), Gaps = 30/394 (7%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L R L ++ L + T+R G + + + Sbjct: 94 VRCLILLPTRELALQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQFGALTFNPDLVVA 153 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L ++ + + +H I + ++ + Sbjct: 154 TPGRLSQHIAEKSIDLTLVTHFVIDEADKLFEMG-----------------FMPDVYRIL 196 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDD 434 QT+ VSAT + E + + V+ I E Sbjct: 197 SRLPEKRQTMLVSATLPSELTEFVNFGLRNPVIAQVDKDMQINEQLELRFIYSRTEDKVA 256 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + + + ER +V TK E L G V ++ +D R + + Sbjct: 257 TLCRLLRNSNDTERTIVFVSTKHHVEFFRALLAATGITVSAVYGSMDMTARSHQMGLFKS 316 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + VLV +L GLD+P V V D F S + I +GR AR G AI Sbjct: 317 LKTRVLVVTDLAARGLDLPLVDCVINYD-----FPHSSKLFIHRVGRTARAGRQGLAISI 371 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEE-HGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + A I R+ K + I G + ++ ++I + + + Sbjct: 372 VTMYDFAYAFEILTAIGRKMVISKEQIVGNEICAIGTVGDITLLVENIKSIIQDDSDIKS 431 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + N+ P + I + L+ Sbjct: 432 LKMSMDASYNLYYKTRPNPSKNAIDRAQQLLKSM 465 >UniRef50_B5GG34 ATP-dependent RNA helicase n=14 Tax=Streptomyces RepID=B5GG34_9ACTO Length = 748 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 49/373 (13%), Positives = 101/373 (27%), Gaps = 38/373 (10%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G G + Y+ P L D + + + + M Sbjct: 163 LRMKVVCGGTSMGNQIYALERGVDILVATPGRLRDLINRGACSLEKVQIAILDEADQMAD 222 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + T + + Q + SAT N +V+ V Sbjct: 223 LGFMPEVTEL-----------------LDQVPAGGQRMLFSATLENEIDALVKRYLVNPV 265 Query: 413 VRPTGLLDPIIEVRPVA---TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + D A+ R ++ T+ A+ + E L + Sbjct: 266 AHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDA 325 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G + LH + R ++ D + G + LV ++ G+ + + LV +D Sbjct: 326 GVKADALHGGMTQGARTRVLADFKDGYVNALVATDVAARGIHVDGIDLVLNVD-----PA 380 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + + GR AR G + + E H I Sbjct: 381 GDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAG------VDAARHQIGGAV 434 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 G T+ + + + + D+ + L++ + + Sbjct: 435 F--DAELAEITGARSM-TEVQAESAGQSAKQAEREVEDL-TRELERAKRRAGEYRAEADR 490 Query: 649 NLEFEEAAQIRDQ 661 + AA+ R + Sbjct: 491 LVA--RAARERGE 501 >UniRef50_Q6BML1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=11 Tax=Saccharomycetales RepID=PRP5_DEBHA Length = 913 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 53/462 (11%), Positives = 121/462 (26%), Gaps = 32/462 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK--VLLENNKLL 281 + + + I + + L + L+ Sbjct: 332 EGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGP 391 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 +T + L++ EL + + N S G + L ++V Sbjct: 392 IGLIMTPTRELALQIHKELNHFTKKLNISSC--CCFGGSSIESQIAELKKGAQIIVGTPG 449 Query: 342 VTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + G + R L E + + K QT+ SAT Sbjct: 450 RIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQTVLFSATFP 509 Query: 398 NYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQV---DDLLSEIRQRAAINE 447 + + + + G + +E+ + S++ Sbjct: 510 RKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKLLSTLNDYG 569 Query: 448 ------RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE--FDV 499 ++L+ + A++L L +H D ++R IR+ ++ Sbjct: 570 DKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFSSSNSGVNI 629 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ GLD+ ++LV +A + +GR R G AI + Sbjct: 630 LIATSIAARGLDVKGLNLVINYEA-----ASHMEDYVHRVGRTGRAGRKGTAITFVSSKQ 684 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + R + + I + V N + Sbjct: 685 GRAITDLVKAMRLSKVSEDEINPRLIEISTKFLEGVKSGKEKYNFGFSGKGLDNLQEIRE 744 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 ++ + + + + + ++ D Sbjct: 745 SNRDLERKVYGEENDSSTFKANEKKQNKTDIHQSDLDVKLPD 786 >UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma RepID=Q978T9_THEVO Length = 373 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 18/309 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + T+ + ++ G + R + G + + ++ Sbjct: 65 AKEKGIRALILLPTRELAVQVAKVSEALGKRSGIRTV-VVYGGVSINKQIELILRGANII 123 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V T+ I + D+ L E L K + Q+ SAT Sbjct: 124 VGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPVERQSFLFSAT 183 Query: 396 PGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +E + G + ++ + +D V ++ L S I + E+ Sbjct: 184 IPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAVSRRERKLRTLFSYIDKYK--PEK 241 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ + TK A + E L HG+ +H D+ +R + + + LV N+ Sbjct: 242 SIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKNF-GRFLVATNVAAR 300 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+ +S + D R + +GR AR G+A + I Sbjct: 301 GLDIGGISDIINYDVP-----DDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSIDMIRH 355 Query: 568 TERRREKQQ 576 R + K+ Sbjct: 356 EARVKMKEI 364 >UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Actinomycetales RepID=D2Q1I3_9ACTO Length = 715 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 85/300 (28%), Gaps = 18/300 (6%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + L + +++ + L + + S L G P P D L L++ Sbjct: 338 RRPRGMILVPTRELAMQVHDALEPLAHVMGVSVKL--IAGGLPYPKQIDALRRGVDLLIA 395 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I L E + Q + SAT Sbjct: 396 TPGRLIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLLFSATLD 455 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERVLV 451 N + D V T + L +E+ A+ + R ++ Sbjct: 456 NDVDTIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQSLTAEL---ASRDGRTII 512 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK A+ + L + G LH + R + + G VLV ++ G+ Sbjct: 513 FVRTKLGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVATDVAARGIH 572 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 + +V LV D E + + GR AR G + + E+ Sbjct: 573 VDDVGLVVQADPPAE-----HKDYLHRAGRTARAGGKGAVVTLLLPHQRRGMIRMAESAG 627 >UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE46_9ALVE Length = 481 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 63/504 (12%), Positives = 140/504 (27%), Gaps = 67/504 (13%) Query: 141 SVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA--ILRRLAELQYARNDQAFQRGTFRVRGE 198 +V A G P + + V + D + R E ++ +A+ + F Sbjct: 10 TVDAAVGKPSPPEVIYGDSKIEVAGLSDPTEVPLARTFEESGLRKSLRAYLKDKFAT--- 66 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 P+ + L +V ++ F + + + + + Sbjct: 67 -----PSAIQAACWPLLLSGLDVIGVAE------TGSGKTLGFALPFMSKAMQKGDDSMM 115 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + ELA + ++ + +++ + + + + R Sbjct: 116 MVLSPTRELARQIHEVIVDVDKKKQKLPSI-------CLYGGTPKWEQQKQLKAEHPRIV 168 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P + D L L + ++ + + M +G+ Sbjct: 169 VGTPGRVLDLLQDGSLDLYKVNYAVLDEADRMLDMGFLPS-VTDIFGYLPSPD------- 220 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG----------------LLDP 421 Q++ SAT S + +++ + Sbjct: 221 -------KRQSLMFSATWNKEVRRLSRKLMKRERITVTVMGSNETKGNEDELTANTRITQ 273 Query: 422 IIEVRPVAT-QVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 I++ +++ L + +V+V L K+ A L L ++ V LH Sbjct: 274 TIDIVQDRKPKMNRLWYHLGNLCPNKGVWKVIVFALYKKEAAHLERTLRDY-YDVVGLHG 332 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ + R I+ G+ +LV ++ GLD+ +V+ V + Sbjct: 333 DMTQMAREASIKRFTEGQNLILVATDVAARGLDVKDVTGVINYTFPL-----VIEDYVHR 387 Query: 539 IGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ--GLNKKVVD 595 IGR R G A+ + + R Q + Q G Sbjct: 388 IGRTGRAGRTGNAVTIFNADEEKQFAFDLKGLLERCGQPVSEGLAKLANQTGGFKASKKK 447 Query: 596 ILALGQNIAKTKAKGRGKSRPIVE 619 + + K + + Sbjct: 448 VHPIYGAFFKDEEEMAKLEAKKTH 471 >UniRef50_Q9SA27 DEAD-box ATP-dependent RNA helicase 36 n=14 Tax=Eukaryota RepID=RH36_ARATH Length = 491 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 56/411 (13%), Positives = 111/411 (27%), Gaps = 40/411 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F + + + ELA +L E+ + Sbjct: 103 QTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELA---------FQLAEQFKALGSCL 153 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + S P + L + + Sbjct: 154 NLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVF------------ 201 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R + L E L + + + QT+ SAT + Sbjct: 202 --SRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLEHSSNKA 259 Query: 412 VVRPT----GLLDPIIEVRPVATQ--VDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLT 463 +D + + + + L I + ++ T R + L+ Sbjct: 260 YFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLS 319 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E +HS R+ + + G+ +L+ ++ GLD+P V LV D Sbjct: 320 LMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDI 379 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK---QQKYN 579 R R + +GR AR G A+ + + I E ++ + ++ Sbjct: 380 P-----RDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVIT 434 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + +T K+V + L R R + + + Sbjct: 435 DSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRKTLADKGLLKKRGKR 485 >UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DSB9_ZYGRO Length = 491 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 131/393 (33%), Gaps = 39/393 (9%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL-ENNKLLEEQ 284 F + +P P + + + + R L E + + Sbjct: 119 KFQKPSKIQEHALPLLLHNPPRNMIAQSQSGTGKTAAFSLAMLTRVNPELGEATQAICLA 178 Query: 285 RLTQRTQFDLEMMNELGYCSGIE---------NYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + LE++ E+G + I + + + P T+ D + + Sbjct: 179 PSRELARQTLEVIQEMGKFAKISTQLIVPEAFEKGQQIKAQVVVGTPGTVLDLIRRKLIN 238 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + M L ++ ++ ++F + Q + SAT Sbjct: 239 LSQVKIFVLDEADNMLD----------------KQGLGDQCIRVKKFLPKSTQLVLFSAT 282 Query: 396 PGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + E + V D + + + ++L+E+ I Sbjct: 283 FPDQVKEYAKRVVPDANSLELQRNEVNVSAIKQLYMDCNDESHKYEVLTELYGLLTIGSS 342 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+ A L L++ G +V LH D+ + ER +I D R G VL+ N+L Sbjct: 343 II-FVSTKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDFREGRSKVLITTNVLAR 401 Query: 509 GLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+P VS+V D + + + +GR R G AI + + I Sbjct: 402 GIDIPTVSMVVNYDLPTTQTGQPDPSTYVHRVGRTGRFGRKGVAISFVH---DKKSYQIL 458 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + ++ + + + K V +L Sbjct: 459 SSIQKYFQDVEMTRVPTDDWDKVEKIVKKVLKE 491 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/439 (14%), Positives = 133/439 (30%), Gaps = 42/439 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A + + Q ++ Sbjct: 580 KKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQQHYNTFIQR 639 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + L + L + +V +H + + Sbjct: 640 LKDFPV------RIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDLGLL 693 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + ++ATP L S + D V Sbjct: 694 IIDEEQRFGVT--------HKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEE 745 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERV 473 +D + V + + I + + +V D+ +++ G V Sbjct: 746 APMDRMPIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVPGASV 805 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + E +I+ D GE DVLV ++ GLD+ + + I DAD+ G + Sbjct: 806 SFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQ--- 862 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A + K + E +R + + G G+ + Sbjct: 863 -LYQLRGRVGRSSR-MAYAFLL---YRRDKLLKEVAEKRLAAIREFTDLG---SGIKIAM 914 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ----HAQN 649 D+ G +A+ V D+ K L + + EL+G + + Sbjct: 915 RDLEIRGAGNLLGEAQSG-------HMAAVGYDLYCKMLNEAVKELKGEKEEDQFTTTMD 967 Query: 650 L---EFEEAAQIRDQLHQL 665 L F + I+++ +L Sbjct: 968 LNIDAFIPESYIKNEYQKL 986 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 21/312 (6%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF ++ + + + + G S KT + + + +V ++ Sbjct: 3 AFLEPLEELADYQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYRVIVF-SSEEK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q Y E K P+ D + R+ K Sbjct: 62 AKQAYEEYKMLEEN---------------TFLYPAKDLLFYHADIKGAALTGKRMEVLKK 106 Query: 130 ML---ERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V V+ + A + GL + + + + G +ID + + L L Y R Sbjct: 107 LTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERES 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + + IYP Sbjct: 167 QIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 T V +E+ V E +E + + E + N Sbjct: 226 ATENVEKKEQAVSFSEYFPKEESLFFFDEPVRLQETLEAVEKEYFHSFESRKNAGMTEEA 285 Query: 306 IENYSRFLSGRG 317 E Sbjct: 286 DEIRVFQTKEII 297 Score = 74.9 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 79/240 (32%), Gaps = 27/240 (11%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L ++++ RV++ + ++ A+ L E L ++ D+ + Sbjct: 331 VNPYNNSFEMLTQDLKKLKRQGYRVILVSGSRTRAKRLAEDLRDY---------DLSSFY 381 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +++R +R GE ++V + EG + P + + I ++D G + + Sbjct: 382 SEDMVRTVRPGE--IMVVYGCVAEGYEYPMLKFMVISESDIFGKRKKK------------ 427 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 K + K Y + + + + I I Sbjct: 428 -RRRKVYEGQKIQEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGGIL 486 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKA---LQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A + D P ++ + +++ + AQ+L A + + + Sbjct: 487 YILATQMDLIQKYAGADAKPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQQTE 546 >UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinomycetales RepID=C7NGI5_KYTSD Length = 741 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 54/343 (15%), Positives = 104/343 (30%), Gaps = 16/343 (4%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 LT + +++ + L + + L G P P L Sbjct: 310 RAQRNKPRAVILTPTRELAMQVSDALQPFAHVAGLKHKLVA--GGLPYPPQISALERGLD 367 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +++ I I L E + + Q + S Sbjct: 368 ILIATPGRLIDLIEKGAADLSAVEIAVLDEADHMAEMGFLPEVTQIMDLMPSGGQRMLFS 427 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVL 450 AT N + +VD V T + E R + Q AA + R + Sbjct: 428 ATLDNGIDQLVENYLVDPVTHSTDDATASVTTMEHRAFLVHPHHKKTLTNQIAARDGRTV 487 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TK A+ + E L E G LH ++ +R ++ + G VLV ++ G+ Sbjct: 488 VFVRTKLGADRVAEQLRESGVFAAALHGGLNQAQRNRVLAAFKDGGLPVLVATDVAARGI 547 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 + +VS+V +D + + GR AR G + + + + Sbjct: 548 HVDDVSMVLQVDPP-----ADHKDYLHRAGRTARAGGKGVVVTLALPHQKRTMQRLLDQA 602 Query: 570 RR--REKQQKYNEEH--GITPQGLNKKVVDILALGQNIAKTKA 608 + + + + + IT + + + + + Sbjct: 603 GVDAKPQTMEPDSDELVAITGADVQPREAVDESRVRRMLAPPK 645 >UniRef50_B7G370 Predicted protein n=3 Tax=Bacillariophyta RepID=B7G370_PHATR Length = 491 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 68/461 (14%), Positives = 134/461 (29%), Gaps = 59/461 (12%) Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE- 220 + D + +RL +L R G+ + + +++ V+ FDE Sbjct: 52 RINSKKDSDELTKRLQKLALER--------QKASTGDRLKVIQSDTSSHLSSVKTFDELN 103 Query: 221 -----VERLSL--FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL------ 267 ++ + FD + +PR P + + + + Sbjct: 104 LPKHLLDAVYAMGFDRPSAIQEEALPRILADPMRNLIGQAQAGSGKSAAFTLGMLYRIVV 163 Query: 268 -------AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A E + ++ + + L + + + + Sbjct: 164 DSPATTQALCVTPTRELAIQIVDKAVKPLAANMKGLKICLAIANTFIDRGKTVDAHLVVG 223 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + + M L Sbjct: 224 TPGKVSDFLKRKNLNPRTIKVFVLDEADHMVEEG----------------GHRANSLVIR 267 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----------LDPIIEVRPVAT 430 + Q+++ SAT ++ + V ++ R Sbjct: 268 KVMPPTCQSLFFSATFPPEVVQFAEKMVEKPDKILIEDGPEFLVVDNIRQLWVDTRNYEG 327 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L++I +I + +V T A+ + L G LHS + R + Sbjct: 328 GKIEFLADIYSLMSIG-QSIVFVGTVVQADKVYNTLTSSGYTCSVLHSKVGPENRDTTME 386 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNG 548 R GE +VL+ N+L G+D+ V LV D + + + IGR R G Sbjct: 387 AFRNGESNVLITTNVLARGVDVDNVGLVINYDVPIDKDGNPDHETYLHRIGRTGRFGRKG 446 Query: 549 KAILYG-DKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 AI D+ + + AI + ++ K E T Sbjct: 447 TAINLISDEKSIGILAAIEKFYSPAKEMIKQVEADPETLAD 487 >UniRef50_A7RHS2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RHS2_NEMVE Length = 620 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 55/434 (12%), Positives = 128/434 (29%), Gaps = 39/434 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFD-PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 +++++ + + TG + + + H++T + Sbjct: 216 YHSPTPIQMQVLPVLLSGRDVMVCASTGSGKTASFLLPMISRIHHITGKLLPSSPEVRFI 275 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + + + G + + + + P Sbjct: 276 YGLILAPTRELCMQIEKQTKEFVHGMTNMRTALLIGGVPVPPQLHRLKMGVQVIVATPGR 335 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + + + + + ++ M + ++ E + Sbjct: 336 MVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQ-----------------ILERLS 378 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLS 437 QT+ SAT + + V G +I ++ L S Sbjct: 379 NRRQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKSKKKQLFS 438 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLGE 496 ++ N +V +K A+ L E + + + +H D ER +I++D GE Sbjct: 439 ILKDSRHFNPPAVVFVESKLGADMLAEAVSKVCHIKCLSMHGDKPQAERAQILQDFLAGE 498 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 ++V +L G+D+ + V D + + IGRA R G +I + + Sbjct: 499 CPLVVSTAVLGRGVDLLNIRQVINFDMP-----PTYEEYVHQIGRAGRLGATGWSISFIN 553 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + + + K +E + V+D N K K ++ Sbjct: 554 NASKGLFLQLIN--KLQPMGVKLPDELTRSA-----HVLDERRRASNSRKRAEKDEIVNQ 606 Query: 616 PIVEPDNVPMDMSP 629 + V + Sbjct: 607 SNLMDLIVKRKKNK 620 >UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Z1_THEAS Length = 558 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 94/329 (28%), Gaps = 17/329 (5%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A +E + + + T+ G + R ++ G Sbjct: 59 AFALPLLNRMEFGERSPKVLVLSPTRELALQTAREFQWLGYDLRIR-VASLVGGMDMERQ 117 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + I +R D L E L + Sbjct: 118 VKALREGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMT 177 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLS 437 ++ SAT + + + + + P + + L + Sbjct: 178 QVERSWLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLAN 237 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + R +V TK ++L E L + G + LH D+ ER + +LR G Sbjct: 238 VLLFE--RPRRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRS 295 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 +LV ++ GLD+ VS V G + I GR R G+ ++ Sbjct: 296 QILVATDVAARGLDISGVSHVIQ-----FGLPGCLETFIHRSGRTGRAGQEGRNLILLTA 350 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + + + + Sbjct: 351 REAGEFRGMIRGTSLEVEWLPAPDAEELE 379 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 96/629 (15%), Positives = 194/629 (30%), Gaps = 90/629 (14%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 GV+ S ++ + V+ PN A + Y + E+ V Sbjct: 25 GVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVL----------- 73 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGL-GDPDLYLK 156 + P T A + + RL + +L+ D +++ + I P+ Y + Sbjct: 74 --FYPMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYER 131 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 + ++V D + ++L Y N + G F +RG ++DI+ R++ Sbjct: 132 SVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIY-THDYKDPYRLDF 190 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F + +E + FD T + ++ I I P E QA+E+I + + + E Sbjct: 191 FGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKE 250 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + KL + DL + E + Y F + T+ D+ L++ Sbjct: 251 DKKL----------ETDLMHIEERKRMDSLSMYIEFFNDEVT-----TILDFSNPYDLIL 295 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 VD + + + E L + + + L+ Q VS P Sbjct: 296 VDSYKMELNEETTYQDLLTYSHTMQGEAFIGLN--FKVKLKELLKKNHLSFQIYSVSDKP 353 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 +V P ++ L+ I + +L++T T Sbjct: 354 STDLGVL--------------------DVDPFVGHLEQLILFINEY--NGFNILISTKTM 391 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E + E+L H + + VLV +L +D+ Sbjct: 392 VSFERIKEHLTNHKI--------------SYSVNQFKDAMV-VLVEEDLPGSFIDL-NHK 435 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 + + + + + + + A I + + Sbjct: 436 FIILTEDTILDTKKKAKVR-------------------YRSVINQAVKIRDISELQNGDY 476 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + GI K + + K P + D V S ++ K+ Sbjct: 477 VVHYDFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKL 536 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +L + ++ + D+L L Sbjct: 537 SKLNAKQWSKTKAQVKQKIKDLSDRLLNL 565 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 69/470 (14%), Positives = 141/470 (30%), Gaps = 53/470 (11%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE-VERLSLF 227 + + RL L YA+ QA F R +++ + + +E +++ Sbjct: 555 IKDLSDRLLNL-YAKRHQAEGY-QFSPRTDML---------TSFEKDFNYDETIDQQKAI 603 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + + P + + ++ A + Sbjct: 604 DAV------FEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLAR 657 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + + G LS + + + + VV +H + Sbjct: 658 QHYLTFKDRFEKYGGS------VALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDD 711 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + + T+ +SATP L+ + Sbjct: 712 IVFKDLGLFIIDEE--------QRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYG 763 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + D + T L+ V + L+ I + + +V E L Sbjct: 764 LKDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKL 823 Query: 467 EEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 ++ Y H + + + EFD+LV ++ G+D+P + + I DAD Sbjct: 824 QQLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDAD 883 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R+ I Y + K + + ++R + + G Sbjct: 884 HLGLAQ----LYQLRGRVGRSDR---IAYAYLMFDGY-KDVNDEAKKRLSVIEDFTDLG- 934 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 G + D+ G + + D+V MD+ K L + Sbjct: 935 --SGFKIALRDLGIRGAGDILGEEQSGF-------IDSVGMDLYMKLLDE 975 >UniRef50_Q54DV7 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54DV7_DICDI Length = 777 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/477 (12%), Positives = 135/477 (28%), Gaps = 62/477 (12%) Query: 146 YGLGDPDLYLKMMLHLTV-------GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 + + +M + + G I + I + D F G Sbjct: 251 MKQLTSEDHREMRIKIKANVSTSFDGQEIPRPIIT-------FEDQDLPLSMKKF--IGF 301 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPL---TGQIVSTIPRFTIYPKTHYVTPRER 255 + +P+ + ++ + + + + +G+ + + H + R Sbjct: 302 LTTKYPSITAPTPVQSQCWPGILSGQDILSIAQTGSGKTLGYLLPAIPNILEHLRQRKIR 361 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 Q + K E + K+L N + + ++ E ++ Sbjct: 362 RQQMTMQEKLENKKKSKLLKNTNMGPMVLIIVPTRELAKQV--ESSCKPLRSKFNIHSIA 419 Query: 316 RGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYR----GDRARKETLVEYGFRLPS 370 G D L +++ + I L E L Sbjct: 420 IYGGVDANEQKDILGQEHNEIIIATPGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQL 479 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------------- 417 ++ K E QT+ SAT + + + + + Sbjct: 480 GFGDQLQKISEQIRPDRQTLMFSATFPQTMQDAAKKWLTNPLKIRVKSSSTNQGSTSIIS 539 Query: 418 -LLDPIIEVRPVATQVDDLLSEIRQRAAI------NERVLVTTLTKRMA-------EDLT 463 + +++ + L + I +L+ T + E + Sbjct: 540 KNVKQVVKPIAEKEKSKYLTTFINSIMKKELLLRNRSLILIFVNTIKSVKPILTVIEKMC 599 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM-PEVSLVAILD 522 + E + +H D+ ER +I + + G+ +LV ++L G+ + + V D Sbjct: 600 DQFRERKYKCGAIHGDMKQFERDSVIDNFKSGKISILVATDILGRGIHIGGNLRFVINYD 659 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG--DKITPSMAKAIGETERRREKQQ 576 F S + +GR R G A+ MA+ + + ++Q Sbjct: 660 -----FPSSLEQYVHRVGRTGRQGNKGHALTLFTDTPQNTPMARGLIKILEECKQQI 711 >UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteriaceae RepID=C4K3R7_HAMD5 Length = 454 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 56/421 (13%), Positives = 113/421 (26%), Gaps = 35/421 (8%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 F I H + ++ L L + L + T Sbjct: 50 TGTGKTIAFLIPALQHLIDFPKKKP----GPPRILILAPTRELAIQVADQATELAKYTSL 105 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + + G + L Y+ + + + + M Sbjct: 106 KVAKIT-GGVAYMNHTEIFSTNQDILVATTGRLLQYIKEENFDCRAVEILILDEADRMLD 164 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-PGNYELEKSGGDVVDQ 411 QT+ SAT E S + D Sbjct: 165 M-----------------GFAQDIEVISAETRWRKQTLLFSATLESATIREFSERVLRDP 207 Query: 412 VVRPTGL----LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEY 465 + I++ + + ++ + ++ ++ T+ +L Sbjct: 208 IYLEAAPSVRERKKILQSYYRSDNLPHKIALLCYLLKTPSVQKSIIFVRTREKVHELVHR 267 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L+ G YL ++ +R E I L G VLV ++ GLD+ ++S V D Sbjct: 268 LQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVATDVASRGLDIEDISHVFNFDMPY 327 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + IGR AR G AI + + K + ++ K + +E Sbjct: 328 TG-----DVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVERYLKKTIKPRVVDELRPT 382 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 T KK + + K + + + + +++ + Sbjct: 383 TKAPNEKKAGKPSKKVLAKREEQKKAKKEKTKVKVKVKIRHRDKKNLGKRREPKNLKKNK 442 Query: 645 Q 645 + Sbjct: 443 E 443 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 59/433 (13%), Positives = 127/433 (29%), Gaps = 37/433 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + I+ A ++ + Q ++ Sbjct: 581 KHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQQHYNTFVQR 640 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + E L + + ++ +H + + Sbjct: 641 LKEFPV------RIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKDLGLL 694 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + ++ATP L S + D V Sbjct: 695 IIDEEQRFGVTHKEKIKKLKENI--------DVLTLTATPIPRTLHMSLIGIRDMSVLEE 746 Query: 417 GLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RV 473 + I+ + + + I + A + +V D+ ++ V Sbjct: 747 APNERMPIQTYVMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLVPDANV 806 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H + E +I+ D G+ DVLV ++ GLD+P + + I DAD+ G + Sbjct: 807 AFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLSQ--- 863 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + K + E +R + + G G+ + Sbjct: 864 -LYQLRGRVGRSNRMAYAFLLYQRD----KLLKEVAEKRLSAIREFTDLG---SGIKIAM 915 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQNLE 651 D+ G +A+ + V D+ K L + + +L+G ++ Sbjct: 916 RDLEIRGAGNLLGEAQSG-------HMEAVGYDLYCKMLNEAVRQLKGGPEAETFTTLID 968 Query: 652 FEEAAQIRDQLHQ 664 A I + + Sbjct: 969 LNVDAYIPEYYIK 981 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 56/302 (18%), Positives = 110/302 (36%), Gaps = 21/302 (6%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + + G + K ++ + + +V N+ A + Y E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYKLVVF-SNEEKAKKAYEEYLLF 72 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVV 137 E P+ D + + R+ +A+ E+ V Sbjct: 73 GEE---------------TYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117 Query: 138 VVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+ ++ A + G+ PD K +H+T +D + + L L Y R Q G F VR Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP ++++ +R+EL+ +E++ + +FD + + + I TIYP + + Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 V ++ E + E + T+ + G E F + Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEEELRVFQTKD 296 Query: 317 GP 318 Sbjct: 297 II 298 Score = 84.1 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 78/244 (31%), Gaps = 35/244 (14%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L ++++ RV++ + ++ A+ L E L ++ D+ + Sbjct: 332 VNPYNNSFELLTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDY---------DLSSFY 382 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI----QTIG 540 ++ R+++ GE ++ EG + P + V I ++D G + ++ Q I Sbjct: 383 SEDMQREVKPGE--IMAAYGYASEGYEYPMLKFVVISESDIFGRKKKKKKRKKYEGQRI- 439 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + K Y I + + K + I+ Sbjct: 440 ----------------QDFAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAE 483 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + D + + +++ + A++L A + Sbjct: 484 GGVLYIPVAQMDLIQKYAGADAKKPRLNKLGTIQWGKTKSQVKKAVQIVAKDLVELYAVR 543 Query: 658 IRDQ 661 + + Sbjct: 544 QQSE 547 >UniRef50_A8FF99 ATP-dependent RNA helicase n=71 Tax=Bacilli RepID=A8FF99_BACP2 Length = 439 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 55/426 (12%), Positives = 122/426 (28%), Gaps = 42/426 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + +E + + ELA + + + Sbjct: 47 QSQTGTGKTHAYLLPLIHSIDPSKEHVQVVITAPTRELANQIFK-----EAQTILKNASP 101 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + G P + D + L V + + I + Sbjct: 102 EEEIKAKLYIGGTDKQKSIQKLKNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADL 161 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + Q + SAT + Sbjct: 162 MLDMG-----------------FLEDVDRIGSQMPEQLQMLVFSATIPEKLKPFLKKYMD 204 Query: 410 DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTE 464 + I+ V ++ D L + + ++ TK +++ Sbjct: 205 NPKYAHVEPKRITAENIQHILVPSKQRDKLKLLHEMVTNVQPYLGIIFANTKTTVDEIAS 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L+E G +V LH + ER ++++ + EF +V +L G+D+ VS V + Sbjct: 265 FLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIVASDLAARGIDIKGVSHVINYELP 324 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + +GR AR +G A+ + I + E + + E Sbjct: 325 -----SDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQIEKMGVVFENKTIVHGEWR 379 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 L ++ N + KAK + V+P K + +++ +++ Sbjct: 380 DADDRLKRQRRK---KAPNEIEEKAKRLVRKPKAVKPG------YKKKMTREMDKIKRQE 430 Query: 644 MQHAQN 649 + ++ Sbjct: 431 RRKSKR 436 >UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KDQ4_9ALVE Length = 755 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 54/394 (13%), Positives = 104/394 (26%), Gaps = 46/394 (11%) Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 + I ++ +++ ++ + T+ V + Sbjct: 290 LHISYPNGSPTPIQAQVWPVALQGRDIVAIAETGSGKTLAYLLP----AIVHLNNQPPVT 345 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L L + E + + + Sbjct: 346 IPGEPIVLVLAPTRELASQIAEEVVVVVVVVALRVTYLFGGVKKREQVEQMNRDVPDMIV 405 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D + G+ + + + + M + Sbjct: 406 ATPGRLLDMMSDGGVCLRRVTFFVVDEADRMILLG-----------------FWKQVKTI 448 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + Q I +SAT + S D V G + I+ + Sbjct: 449 SQQIRPDRQCIMLSATWPEEVRDVSLKLCREDPVHINVGDISDNIDDSDPYNREK----- 503 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR----- 493 + A ++VL+ T K+ ++L L + G +HS + ER I + Sbjct: 504 -LRTARSVKQVLIFTSGKKSVDNLVGCLRQIGWPAVGIHSGKEQAEREWIFDQFKGRLNT 562 Query: 494 -------LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 E +LV +++ G+D V V D F S I IGR R Sbjct: 563 EDHSRASRAEAVILVATDIMARGMDFVSVRYVINFD-----FPESCEDYIHRIGRTGRAG 617 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + G A Y + +A+ + R Sbjct: 618 HQGNAYSYFSENDFWVAREMIPLLRESNVDIPPM 651 >UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JX58_SCHJY Length = 519 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 61/367 (16%), Positives = 109/367 (29%), Gaps = 36/367 (9%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L + +RL RT ++ +N P L + Sbjct: 154 PTRELAEQVNRQLKRLIARTDLKAIFYDKSNEKIQEKNTKLREIYDICVSTPMRLVHAIK 213 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + L + + + + + ++ + + V Sbjct: 214 SG-LSLANVEFLVLDEADRLFEKNFVEQTDGVL----------------SACTHPRICKC 256 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAIN 446 SAT + E + D + G D I + L RQ + Sbjct: 257 LFSATLPSTVEELAKTVAHDPLRIIVGQKDAATSTIEQKLLFVGNEASKLVIFRQMVSDG 316 Query: 447 E---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 E RV++ A+ L L G V +H ++ ++R E++ R GE VL+ Sbjct: 317 EIQPRVVIFVQDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVLIAT 376 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 +LL G+D V LV D F +S S I IGR R + G+AI + K Sbjct: 377 DLLARGIDFNGVKLVINYD-----FPQSVHSYIHRIGRTGRAGHGGRAITFYTKEDSEYL 431 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA----KTKAKGRGKSRPIV 618 K + + + E P+ + + + ++ + R Sbjct: 432 KLVAGVMKS--SGCEVPEWIMALPKPTKQLKKKLKYHAPDRKRITTRSSYDRHKEVRKKE 489 Query: 619 EPDNVPM 625 Sbjct: 490 AIQQAKK 496 >UniRef50_Q581A3 ATP-dependent DEAD/H RNA helicase, putative n=5 Tax=Trypanosoma RepID=Q581A3_9TRYP Length = 745 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 99/346 (28%), Gaps = 35/346 (10%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + L L L++ M +E Sbjct: 366 RAVPHVLVLCPTRELVQQTRRVFSLLSENAVRIAGMYGGQDREQQLEYVRHMGGCDVLVA 425 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ A + + S + + + M A + + Sbjct: 426 TPGRLCDFVEAREVSLKAVSFLIMDEADRMLELGFAPQLEFLMSD--------------I 471 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL----DPIIEVRPVATQVDDL 435 + + QT +AT + + ++++ + + + Sbjct: 472 KRYRRSRQTTMWTATWNATVGGLATRFMQPERLLLEVDREHKVNSNVTQRMYALSDPSQR 531 Query: 436 LSEIRQRAAIN-----ERVLVTTLTKRMAEDLTEYLEEHG----ERVRYLHSDIDTVERM 486 L I + ++VL+ K E L L +++LH + R Sbjct: 532 LQAIVKLYDDGVINRRQQVLIFANRKEEVEWLASELSRALRAPPNMLQFLHGGMRQKRRE 591 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +IR E VL ++ G+D+P +S V D + + IGR R Sbjct: 592 AMIRGFSCNEVRVLCATDVAARGIDVPGLSHVINYDLPAH-----VDAYVHRIGRTGRAG 646 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 G A + P+ A I ++++ ++ Q + + Sbjct: 647 RTGTAHTFVTAGDPN-APIIARFIVQQQQGAALPDDVLSIVQDVER 691 >UniRef50_A2QY39 ATP-dependent RNA helicase dhh1 n=35 Tax=Eukaryota RepID=DHH1_ASPNC Length = 505 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 106/374 (28%), Gaps = 30/374 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ ++ LTG+ + + +V P + + L L Sbjct: 73 IQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTS 132 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + ++ M+ G + + P + D + + Sbjct: 133 HVCKTLGKHLGINV-MVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECP 191 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + F Q + SAT Sbjct: 192 TFVMDEADKLL-----------------SPEFTPVIEQLLSFHPKDRQVMLFSATFPLIV 234 Query: 401 LEKSGGDVVDQVVRP-----TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + T Q L+ + + IN + ++ + Sbjct: 235 KSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQIN-QSIIFCNS 293 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E L + + E G Y H+ + R + D R G LV +LL G+D+ V Sbjct: 294 TNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 353 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 ++V D F ++ + + IGR+ R + G AI + I + + Sbjct: 354 NVVINFD-----FPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQ 408 Query: 575 QQKYNEEHGITPQG 588 N + + Sbjct: 409 PIPQNIDKKLYVYD 422 >UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgroup RepID=B5X544_DROME Length = 609 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/435 (15%), Positives = 129/435 (29%), Gaps = 39/435 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 T + R + E R T + ++E Sbjct: 188 FLTPIINGLRAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKH 247 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLV 362 G E R+ P + L + L + + + + Sbjct: 248 GAECKQRY---DILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEG-------- 296 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTI-YVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 + + + + + + SAT + + + + V G+ + Sbjct: 297 ------QNNFKEQLDDIYAACSNPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNS 350 Query: 422 IIEVRP----VATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRY 475 E L IR + VLV +K A+ L E L G V Sbjct: 351 ATETVQQELLFVGSEGGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDV 410 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +H++ +R ++ R G VL+ L+ G+D V+LV D F + S Sbjct: 411 IHAERSQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISY 465 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 I IGR R G+AI + + S + I + E+ + + + K Sbjct: 466 IHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVP---EYMLQMKKVRKSEA 522 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM-MQHAQNLEFE 653 + A + K RP + D K +++ L+ + N + + Sbjct: 523 KMRAKEP---LDREDISTKIRPETKGDEKHKSTKLKKVERTEKILKNRKGYEKDLNSKQK 579 Query: 654 EAAQIRDQLHQLREL 668 + I+ +L + Sbjct: 580 KLGNIKTELKPAGKR 594 >UniRef50_A4RUB4 Predicted protein n=4 Tax=Mamiellales RepID=A4RUB4_OSTLU Length = 474 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L L D + + ++ + + ++ + V Sbjct: 141 VDIVVATPMRLKILLQHDKIDLSKVLYLVLDEADKLFEMGFVEQIDAVVA---------- 190 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVAT 430 + SAT E + + + G + I + Sbjct: 191 ------ACDNKDVTRALFSATLPEKVEELARSVMARPIRLTVGERNSASNTISQRMVFCG 244 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 L +RQ + V++ T +K A+ L + L G + +H+++ +R E Sbjct: 245 HEAGKLLALRQIIREGIKPPVIIFTQSKERAKHLAKELTGDGLHIGLIHAEMSDSKREEQ 304 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + R+GE VL+ +L+ G+D VS V D F S S I IGR+ R Sbjct: 305 VDRFRMGETWVLIATDLMARGMDFVGVSTVINFD-----FPGSPTSYIHRIGRSGRAGRP 359 Query: 548 GKAILYGDKIT--PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G AI + + K I + + + +GL ++ Sbjct: 360 GAAITFFTEEDAQRGDLKPIANVMKNSGCEVPEWMLNHTGEKGLRRRKRK 409 >UniRef50_D2VE83 Dead box ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2VE83_NAEGR Length = 618 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 123/451 (27%), Gaps = 70/451 (15%) Query: 149 GDPDL--YLKMMLHLTVGMIIDQRAILRRLA----ELQYARNDQAFQRGTFRVRGEVIDI 202 P + LT G ++ + R L E + R Sbjct: 226 LPPRDDRMQTEDVTLTKGSDFEEFGLKRELLMGIFEKGFER------------------- 266 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 P+ + + + LF ++ + F I T + +I + Sbjct: 267 -PSPIQEQTVPLALFGRDILARAK------NGTGKTAAFIIPCLERVDTSKNQIQILILV 319 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 ELA + + + + M+ G + + P Sbjct: 320 PTRELALQTSHVCKEIGKYLNVEV---------MVTTGGTSLKDDIVRLYKPVHILVGTP 370 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D + + S + + + + K F Sbjct: 371 GRIIDLASKGVANLNNVSMLVMDEADKLL-----------------SPEFVPLIEKLISF 413 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-----IEVRPVATQVDDLLS 437 + Q + SAT + + + Q L+ Sbjct: 414 VPPSRQILLFSATFPITVKDFRDKWLTKPYEINLMDELTLKGVTQYYAFVEERQKVHCLN 473 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + IN + ++ + E L + + E G Y+H+ + R + D R G Sbjct: 474 TLFSKLQIN-QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGAC 532 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 LV +L G+D+ V++V D F ++ + + IGR+ R + G AI + Sbjct: 533 RNLVSSDLFTRGIDIQAVNVVINFD-----FPKNSETYLHRIGRSGRYGHLGLAINFVTY 587 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 I + K + + Sbjct: 588 EDRFNLYKIEQELGTEIKPIPPTIDKNLYVA 618 >UniRef50_A7AWS5 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AWS5_BABBO Length = 454 Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 100/373 (26%), Gaps = 21/373 (5%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 LLE+ + + L + ++ + S + + + G L Sbjct: 91 LHHLLEDVQRIYCVVLAPSRELCEQIAEQFRALS--SSIALQVCVIIGGVDMVHQASALA 148 Query: 331 ADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 ++V + + +K + E L D K Q Sbjct: 149 KRPHVIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQ 208 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP-----VATQVDDLLSEIRQRA 443 T SAT + + D + E V + Sbjct: 209 TFLFSATMTKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWY 268 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV---RYLHSDIDTVERMEIIRDLRLGEFDVL 500 +V T A+ YL+ LH + +R ++ + G ++L Sbjct: 269 YATRTAIVFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNIL 328 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V + GLD+P V LV D + I +GR AR G A+ + Sbjct: 329 VATEVGGRGLDLPMVELVINFDIP-----ECSKDYIHRVGRTARAGRSGLALTVVTQYDV 383 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + I ++ + + + K KGR + V Sbjct: 384 ELFQRIELALNKKL---EEFTDLDEDTALAKHALCAESLRRVQSEKLNHKGRTNTNKRVS 440 Query: 620 PDNVPMDMSPKAL 632 + + + Sbjct: 441 KFQAKYEAAKRKR 453 >UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318E3 Length = 460 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 57/367 (15%), Positives = 105/367 (28%), Gaps = 22/367 (5%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA---ARRKV 273 F + ++ LT + ++T + + ++Q+ + LA Sbjct: 5 FADLGSSNAVVTALTKRGIATAFPIQELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLMDR 64 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + +K L + L++++E + ++ G Sbjct: 65 IEATDKRPSALVLAPTRELALQIVDE--TREIAHARALSITAVYGGVGLERQARNAARSH 122 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + +V + + + L E L + + QT+ Sbjct: 123 I-LVATPGRLEDLLQRRAFTLANVKLLILDEADRMLDMGFRPAVDRIVKATNANRQTMLF 181 Query: 393 SATPGNYELEKSGGDVVD-------QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + D +D ++D L+ E+R Sbjct: 182 SATLKGEVDRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEHKLDHLVQELRHH--G 239 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 LV TKR A+ L + L +H D +R + GE DVLV ++ Sbjct: 240 RGLTLVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLVATDV 299 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 G+D+ VS V DA + IGR R G + + Sbjct: 300 AARGIDVNGVSHVINFDAP-----EDREGYVHRIGRTGRAGATGIGVTFVMADQAKDMGK 354 Query: 565 IGETERR 571 I Sbjct: 355 IAVELGL 361 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 85/675 (12%), Positives = 186/675 (27%), Gaps = 112/675 (16%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 ++ L + G TG +++ + +++ P + A + Sbjct: 4 ILHSWNELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAV 63 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ P +P + + S N H+ R+ A A+ +R Sbjct: 64 CTDLAH---------------AAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQR 108 Query: 134 R---DVVVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 V + A+ P Y++ + VG I+ + +L + YAR D Sbjct: 109 DATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSA 168 Query: 190 RGTFRVRGEVIDI---FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 F +RGE++DI A + A R+ +ER+ + T ++ + T+Y Sbjct: 169 CAEFSLRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAA 228 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + ERI + +++ +E + G Sbjct: 229 KEILWSEERIAFLHQNLQKLSECP-----------------AHCVPCIEELTHRKTYEGE 271 Query: 307 EN-YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 E Y + P+ + + + R + Sbjct: 272 EMFYPLCFERPTCVLEYFR---HSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQLAH 328 Query: 366 FRLPSALDNRPLKF----EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 +P+ +P AL T+Y + +S D Sbjct: 329 EHVPARWYPQPEHIVLDFSAVCALHLHTVYFTHFFPQLPACESICLASDPA--------- 379 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 R + E+ + + V V +++ A + Sbjct: 380 ----RSFFGNIPYFKEELLRLSKDGWHVFVFAESEQQALRI------------------- 416 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R L G DV V L G +P + ++ + + + G R +Q Sbjct: 417 --------RALVKG-CDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRARS 467 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 + + + ++ I + V++L + Sbjct: 468 T------PIDTFVELNPGDYVVHAQYGIGLFKGIER------IKTAQSERDYVNLLYAQE 515 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + + + + K+ + + ++ + AQ L Sbjct: 516 ETILIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKLV------- 568 Query: 659 RDQLHQLRELFIAAS 673 +L+ LR+ + Sbjct: 569 --ELYSLRKTTRGHA 581 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 59/463 (12%), Positives = 124/463 (26%), Gaps = 60/463 (12%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P V + ++ A + Q + Sbjct: 612 KQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTPTTLLVEQHFRTICNR 671 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 LS P + L + ++ +H I + Sbjct: 672 FKHFPV------RIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKDVSFKDLGLM 725 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + + +SATP L + D + T Sbjct: 726 ILDEE--------QRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLTT 777 Query: 417 GLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 + IE + + + IR+ ++ E + L++ + Sbjct: 778 PPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSI 837 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 HS + + E +I F +L+ ++ G+D+P + + I AD G + Sbjct: 838 CVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYGVSQ--- 894 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A+ + +R + + G G + Sbjct: 895 -LYQLRGRVGRSDKKAYAYLLYYHD----VALSDLAIKRLQVISDFTDLG---AGFKVAL 946 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ-------- 645 D+ G K + +V D+ + L++ I L+ + Sbjct: 947 KDMEIRGVGNLLGKEQSGDIY-------SVGFDLYVQLLEEAIERLQHAPNEQRIETVID 999 Query: 646 ------------HAQNLEFEEAAQIR-----DQLHQLRELFIA 671 A ++ E +I ++L ++R I Sbjct: 1000 LNYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETIT 1042 >UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FY34_9SPHI Length = 398 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 93/316 (29%), Gaps = 12/316 (3%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 +L E+ + + + T+ + + G+ L Sbjct: 60 LYLLTESKQSEHKTLVLSPTRELAQQTYLRILNCTPSEVNISTISIFGGQSYEKQAAELS 119 Query: 331 ADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 D +VV + + + +K + E L + + QT Sbjct: 120 TDPAIVVATPGRLLDLMDQKLIDLSAFKKVVIDEADELLQLGFMAALFRILGYLPSDKQT 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAIN 446 + SAT E + +P I + +D + I+ Sbjct: 180 LLFSATFPKELEELVPKVLHQPFRFEVQNREPQQSQIHQYLLFVDKNDKKNLIKYLIDHY 239 Query: 447 E--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + L+ T T + + L++HG + L+ D R + D + F+ LV + Sbjct: 240 KIDTALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTATVEDFKNRNFNFLVATD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAK 563 + GL + ++ V + + + IGR AR +G + D Sbjct: 300 IASRGLHLDDLDHVINYEIP-----DTSEQYMHRIGRTARGIRDGYTYTFCDAEDNPNLI 354 Query: 564 AIGETERRREKQQKYN 579 + ++ + Sbjct: 355 KLQIALKKNIPILSEH 370 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 59/416 (14%), Positives = 115/416 (27%), Gaps = 35/416 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + I+ A + + Q E Sbjct: 627 KTDMERTQPMDRLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRER 686 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G +S + A + ++ +H + Sbjct: 687 MA------GYPIAIEMVSRFRSRADQKKILTATAAGQVDILIGTHRVLQHDVKFRDLGLV 740 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + +G + + + +SATP L + D V T Sbjct: 741 IIDEEQRFGVKHKEVF--------KQMRSTVDVLSMSATPIPRTLYLALTGARDLSVIET 792 Query: 417 GLLDPIIEVRPVATQVDDL-LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR- 474 + V T + L + +R +V + L E V Sbjct: 793 APTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINLVAARLRELMPDVTI 852 Query: 475 -YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 H ++ + E++ + G + +LV ++ GLD+P + + I AD+ G + Sbjct: 853 GVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGADRFGLSQ--- 909 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R + A Y + + R+R + + + G G + Sbjct: 910 -LYQLRGRVGRFKHQ-AYAYLLLHRHTRL---LDVARQRLTAMRQHTQLG---AGFRIAM 961 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 D+ G + V ++ + L+Q + L+G A Sbjct: 962 RDLELRGAGNLLGAQQSG-------HIVGVGFELYCQLLRQSVARLKGEKTAAAIR 1010 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 96/245 (39%), Gaps = 22/245 (8%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPT-MVLAPNKTLAAQLYGEMKEFFPENAVEY 88 A L G+T S + + + P +V+A + A +L + F + + Sbjct: 5 ATRARHKLTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPH 64 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------LERR---- 134 + + PE+ + D AS + +L AT+++ RR Sbjct: 65 AQTTLVF--PESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGAT 122 Query: 135 ---DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +V+V + A+ + + L+ G + +L RL +L Y Sbjct: 123 ALPPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAP 182 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G + +RG +ID++P + + R++ F +E+E + FDP+T + +T+ TI + Sbjct: 183 GHYAIRGGIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVR 241 Query: 251 TPRER 255 + Sbjct: 242 LDPSK 246 >UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Tax=Dictyostelium discoideum RepID=DDX27_DICDI Length = 783 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 48/379 (12%), Positives = 116/379 (30%), Gaps = 33/379 (8%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIP 345 + + G + + S P L D+L A G+ + D + + Sbjct: 284 LAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILD 343 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + + K E QT+ SAT + + Sbjct: 344 EADRLLDMG-----------------FKDEINKIVESCPTNRQTMLFSATLNDEVKTLAK 386 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVA---------TQVDDLLSEIRQRAAINERVLVTTLTK 456 + + L + + +L + R ++ +K Sbjct: 387 LSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSK 446 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L + LH ++ +R + ++ R G+ + L+ ++ GLD+ V Sbjct: 447 KEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVK 506 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 V + + + I +GR AR +GK+ + + K I R + K Sbjct: 507 TVINYNMPN-----NMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKS 561 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + ++++ + +++ + + +A R + + + + + + K Sbjct: 562 RSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPK 621 Query: 636 IHELEGLMMQHAQNLEFEE 654 + ++ L E Sbjct: 622 VWYKTKQEEDKSKELWKIE 640 >UniRef50_A3FQ30 Putative uncharacterized protein n=2 Tax=Cryptosporidium RepID=A3FQ30_CRYPV Length = 862 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 99/351 (28%), Gaps = 16/351 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + +I V + R + L+ + L Sbjct: 30 IQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSHSQIVGIRGVILSPTRELAL 89 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 + + + N + G F+ L + +VV I Sbjct: 90 QTYRVVRKLACKTNLV--VCALTGGSSLDRQFESLSGNPDIVVATPGRLFHHIIEAGLSL 147 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + L E L ++ K E Q + VSAT S + + V Sbjct: 148 IAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVSATMPTALASFSKVMLNEPEV 207 Query: 414 RPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 L ++ LL +R +ER ++ TK + + + L Sbjct: 208 IQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSHERAIIFCATKHHVDYIVKIL 267 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E + V Y++ ++D R + R + L+ ++ G+D+P + V D Sbjct: 268 ESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIAARGVDIPMIKYVINFDFPL- 326 Query: 527 GFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 S + + GR AR +G+A + + Sbjct: 327 ----SPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDLCLFLGLKMTTL 373 >UniRef50_C5KHX3 ATP-dependent RNA helicase DRS1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHX3_9ALVE Length = 720 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/431 (13%), Positives = 129/431 (29%), Gaps = 64/431 (14%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVV 337 + + R + + G+ + + P + D L + + + Sbjct: 234 QCYKMLRDFTKFAPLTSCLVVGGFDAQKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLE 293 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 V + + + D ++ + QT+ SAT Sbjct: 294 MCEIVVLDECDRLLEMGF----------------RDECLTIIQKHCNRSRQTMMFSATMN 337 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPI--------IEVRPVATQVDDLLSEIRQRAAINERV 449 L+ + + V T + + I V + LL+ + +R Sbjct: 338 QEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVTSEQQREATLLAACTKH--FTKRC 395 Query: 450 LVTTLTKRMAEDLTEYLEEHG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 L+ K+ A + L G + LH ++ +R++ + D G+ L+ +L Sbjct: 396 LIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQRVKALADFESGKATHLICTDLAAR 455 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 GLD+P V V + + +GR AR +G ++ K I + Sbjct: 456 GLDLPHVETVINFELP-----PDVTKYVHRVGRTARAGASGTSVTMYTPGEYKQVKHIAK 510 Query: 568 T----ERRREK---------------------QQKYNEEHGITPQGLNKKVVDILALGQN 602 +R++ K E Q + ++ V+ + Sbjct: 511 KCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKITESEDKVKQIMQEESVERELRLAD 570 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----LMMQHAQNLEFEEAAQ 657 + K R ++ + A + I + A+ LE ++A + Sbjct: 571 VMAKKVDNMKTHRKEIDRRPRQQWIRKGAGAEAIDSASKVPKTRSEKRAARKLEVQQAKK 630 Query: 658 IRDQLHQLREL 668 +++ + E Sbjct: 631 DQERAERRHEE 641 >UniRef50_C5LT44 RNA helicase-1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5LT44_9ALVE Length = 1227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 105/386 (27%), Gaps = 41/386 (10%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL---PADG 333 ++ E+ G G + P L D L Sbjct: 582 ALQINEQAEALCHAVNLKCACAYGGGIMGPQLSKLKAGCHILVATPGRLIDVLTLSNGKV 641 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + S VT+ + M+ + A QT S Sbjct: 642 TNLRRVSTVTLDEADRMFDMGFEPQI-----------------SMVLRNINPARQTCMFS 684 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + + V G ++ VR + ++LL + + A Sbjct: 685 ATFPPHVEGLARQSLYKPVEVVIGDSGSAATNVKQKVVVVRDEEERFNNLLKLLGEWADH 744 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE---FDVLVG 502 ++ T + + + L ++G LH D +R I D + + ++L+ Sbjct: 745 GSILVFFTK-QDDVDGMYMRLLDYGYACLTLHGGQDQQDRDGTIDDFKKRKPPPANILLA 803 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI-TPS 560 ++ GLD+ V + +GR R N G A + Sbjct: 804 TSVAARGLDVKHCICVINY-----TPPDHAEDYVHRVGRTGRAGNVGFAYTLINSSTEGE 858 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKK--VVDILALGQNIAKTKAKGRGKSRPIV 618 A + E + ++ + ++ +V G + SR Sbjct: 859 YASELVEVLKAASQEVPADLVTLAQNNQVSISAGLVAKKRGGFGGRGFTFESSELSRNQQ 918 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMM 644 + +A ++ +L+ Sbjct: 919 QRKVEMDKAKAEADGTRLDKLKKEEE 944 >UniRef50_D1XKC6 DEAD/DEAH box helicase domain protein n=2 Tax=Streptomyces RepID=D1XKC6_9ACTO Length = 790 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 106/370 (28%), Gaps = 32/370 (8%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G G + Y+ P L D + + D + + M Sbjct: 214 LKMKVVCGGTSMGNQIYALERGVDVLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSD 273 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + T + + Q + SAT N + + V Sbjct: 274 LGFLPEVTEL-----------------LDQIPGGGQRMLFSATMENEIGTLVKRYLSNPV 316 Query: 413 VRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + D AA R ++ T+ A+ + E L E Sbjct: 317 THEVDSAQGNVSTMSHHVLVVKPKDKAPVTAAIAARKGRTIIFVRTQLGADRIAEQLIES 376 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G + LH + R ++ D + G + LV ++ G+ + + LV +D Sbjct: 377 GVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAARGIHVDGIDLVLNVD-----PA 431 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + + GR AR +G + + E H + G Sbjct: 432 GDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAG------VDASRHIVQGAG 485 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + + V + +++ + +A + E + + + +Q++ EL + Sbjct: 486 VFEPEVAEITGARSLTEVQADSANNAAKQAEREAADLTKQLERVQRRAVELREEADRLVA 545 Query: 649 NLEFEEAAQI 658 E Sbjct: 546 RAARERGDDP 555 >UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Y9_9FIRM Length = 474 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 50/347 (14%), Positives = 104/347 (29%), Gaps = 13/347 (3%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A L + + T+ + + + + + +P + Sbjct: 56 AYALPVCQQCHFEDRLPQALILAPTRELADQITQEIQNFSLFRRLTC-ARLVGRQPMKSQ 114 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +V+ I + + L E L + E Sbjct: 115 KYQLKQRVQIVIGTPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLP 174 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQ 441 QT SAT L+ + V D + + I + + + L+ + Sbjct: 175 SPIQTCLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLH 234 Query: 442 RAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V + AE++ E L++ G LH ++ +R +++ R G+ + Sbjct: 235 VFSTIQAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRI 294 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L ++ GLD+ +SL+ D + S I GR R G ++ Sbjct: 295 LCATDVAARGLDIDGLSLIVHWDLPL-----NLESFIHRCGRCGRIDQLGTSVALLTPSQ 349 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 S + ET +++ + + + K K Sbjct: 350 KSRYSSFLETLETQDEAFELDPFDDHSGLAHWKTKNQRQPEKAAELK 396 >UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHQ1_9BACT Length = 406 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 97/327 (29%), Gaps = 17/327 (5%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ + + + T+ + + + + F GE Sbjct: 86 TGKTAAFGLPLLQRIDPTQKRVQALVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGE 145 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV I + L E L + K Sbjct: 146 KIEGQIAALSRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKI 205 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLDPI-------IEVRPVATQ 431 EF A +T SAT + D +P+ V + + Sbjct: 206 LEFTRGAKRTWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEK 265 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D++ I+ A R +V +K +++ L E G V L D+ +R +++R Sbjct: 266 PDEIARFIK--AQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRG 323 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R +VLV ++ G+D+ ++ V GR AR G + Sbjct: 324 FRKERSEVLVSTDVSARGIDVEGLAYVVH-----HQLPDQIEYYTHRSGRTARAGRKGIS 378 Query: 551 ILYGDKITPSMAKAIGETERRREKQQK 577 + + + + + + ++ K Sbjct: 379 MAFITRGDVKRIRELQTELHIKFREIK 405 >UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIX8_9GAMM Length = 410 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 107/353 (30%), Gaps = 31/353 (8%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + + ++ A + E + + DL + +G + Sbjct: 54 YLIPVIQELSAGKSPTRQPKAIVLVPVRELAEQIASFFDKLAAGLDLNAVAIVGGEDFKK 113 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + P L +L + + + + + + Sbjct: 114 QEKQLARADLVVATPGRLIPHLENRSIELDSLDLLVLDEADRILETGFKEALDQ------ 167 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLD 420 A QT+ VSAT + + + + G ++ Sbjct: 168 -----------ILTLCPEARQTLLVSATLPTSVRKLAERILQEPEWVRVGQKREVEANIE 216 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I + T D L + + ++ +V +K A L ++ H + LH D+ Sbjct: 217 QRIILSDDQTLKDKQLCWLLEN-ESYDKAVVFCNSKTEARRLDGFIRYHKFKAALLHGDV 275 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R I R G +LV +L GLD+ V LV + ++G I IG Sbjct: 276 QQKGRFATIEGFRKGTTKILVTTDLAARGLDIEGVDLVINTEIPRKG-----DLYIHRIG 330 Query: 541 RAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 R R +GKA+ ++ +I + R ++ + + K Sbjct: 331 RTGRGGASGKAVSLISPAEWNLMSSIERYLKTRFRKSEISGLIANYKGPKKVK 383 >UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SB31_CHRVI Length = 454 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 118/421 (28%), Gaps = 37/421 (8%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + R V + L L + RL T+ + G + Sbjct: 61 IMQRFIDVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTR-LTSGVITGGESKAHQIA 119 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + P L ++L + D + + + M Sbjct: 120 TLRKNPEILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLD----------------- 162 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYEL-EKSGGDVVDQVVRPTGLLDPI---IEV 425 + L + Q++ SAT L + + + D + I Sbjct: 163 MGFADDVLAIIRYSRPERQSLLFSATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAH 222 Query: 426 RPV-----ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + + LL +R E+ L+ T T+ A L +L+ +RV LH ++ Sbjct: 223 CMLLSDGLEHKQQQLLWLLRHE--TYEKALIFTNTREGAVALGNFLQGQQQRVAVLHGEL 280 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D ER ++ L G + L+ +L G+D+P V V D + G + G Sbjct: 281 DQRERNRVMGLLHSGRVNTLIATDLAARGIDVPGVQRVFNFDLPRRG-----DDYLHRTG 335 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R G AI + ++I + ++ + A Sbjct: 336 RTGRAGEAGVAISLVGPPEWNRMESIARYLNLTFEPREIEGLKASFKGPTKRNKPSKPAA 395 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 K+ A K R + K + + E A Sbjct: 396 TSGKRKSTAAAEEKPRKKERLRDRKNI--GKRRVPTSAKAQEAGHAPLTRRAREHAKPDA 453 Query: 660 D 660 D Sbjct: 454 D 454 >UniRef50_B9RED5 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RED5_RICCO Length = 578 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 76/238 (31%), Gaps = 27/238 (11%) Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L L + V + ++T+ + + + Sbjct: 280 LRSLLCIGVVDVKSQLYLTLDEADRLVDLGFEEDIRE-----------------VLSYFK 322 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIR 440 QT+ SAT + +V V+ G +++ Q + Sbjct: 323 AQRQTLLFSATMPTQVQNFAISALVKPVIINVGRPGAANINVVQRVKYVKQERKKSYILH 382 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 V++ K +D+ L G +H +D ER + + G+ DVL Sbjct: 383 CLKKTQPPVIIFCKDKADVDDIHLNLLSEGVDAVAIHGGMDQEEREHAVSSFKAGKKDVL 442 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 + ++ +GLD ++ V D E + + IGR R + G+A + +K Sbjct: 443 IATDVASKGLDFADIQHVINYDMPAE-----VENYVHRIGRTGRCSKKGRATTFINKS 495 >UniRef50_C1G4K2 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1G4K2_PARBD Length = 1079 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/428 (13%), Positives = 107/428 (25%), Gaps = 48/428 (11%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLEN 277 ++ + + + + I + + + + LEN Sbjct: 478 TLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLEN 537 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + +T + ++ E N G P L ++V Sbjct: 538 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRA--VCAYGGAPIKDQIAELKRGAEIIV 595 Query: 338 DESHVTIPQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 I G + R L E + + +K QT+ S Sbjct: 596 CTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFS 655 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRA--- 443 AT + + V G + I+EVR T+ LL+ + Sbjct: 656 ATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLGDLYADD 715 Query: 444 -AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + R L+ + AE G G F +L+ Sbjct: 716 NNEDARTLIFVDRQEAAEWSAPRPYAQGLPA---------------------GVFPILIA 754 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ ++ LV DA + GR R G A+ + ++ Sbjct: 755 TSVAARGLDVKQLKLVINYDAPNH-----LEDYVHRAGRTGRAGNTGTAVTFLTEVQERY 809 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + I + ++ + E +KV + Sbjct: 810 SVDISKALKQSGQ--PVPEAVQKMVNSFIEKVKAGKEKASGSGFGGKGLERLDQERDAAR 867 Query: 622 NVPMDMSP 629 N Sbjct: 868 NRERKTYK 875 >UniRef50_Q5SM34 ATP-dependent RNA helicase n=4 Tax=Thermus RepID=Q5SM34_THET8 Length = 517 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 44/371 (11%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-------- 299 + +A R E + LT + L++ +E Sbjct: 47 DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL 106 Query: 300 ------LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 G G + + P DYL L + + + M Sbjct: 107 KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 166 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + + QT+ SAT ++ + + + V+ Sbjct: 167 GFEEEVEAL-----------------LSATPPSRQTLLFSATLPSWAKRLAERYMKNPVL 209 Query: 414 RPTGLLDPIIEV-----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 +P+ PV +++ L + A +R +V T TK E++ + L Sbjct: 210 INVIKDEPVTYEEEAVPAPVRGRLEVLSDLLY--VASPDRAMVFTRTKAETEEIAQGLLR 267 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G + LH D+ ER ++ R GE VLV ++ GLD+P+V LV Sbjct: 268 LGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLP---- 323 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + GR R G ++ +A+ RR K+ + Sbjct: 324 -DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEA 382 Query: 588 GLNKKVVDILA 598 + + Sbjct: 383 KWRHLLARLAR 393 >UniRef50_Q6CKI1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Kluyveromyces lactis RepID=PRP5_KLULA Length = 812 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 51/401 (12%), Positives = 125/401 (31%), Gaps = 26/401 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + F LT IP ++ + + + L + Sbjct: 258 DLISNELQFVTLTPIQCQAIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPD 317 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + T+ + E + + G + L ++V Sbjct: 318 ETGPIGLILTPTRELAVQIQEEALKFCKGSGISSICCV-GGSELKQQINELKRGVDIIVA 376 Query: 339 ESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 I + G + R + E + + Q + SA Sbjct: 377 TPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQCVLFSA 436 Query: 395 TPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVAT-QVDDLLSEIRQRAA-- 444 T + + + + + + +++ + + LL + R A Sbjct: 437 TFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLSDRLALH 496 Query: 445 --INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +E+ ++ ++++ + L + L +G +H+ + ER+ ++ + + +L+ Sbjct: 497 RGEDEKTIIFVGSQQLCDLLYDELLLNGITTFPIHAGKPSAERLRNLQKFKETDNGILIC 556 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSM 561 +L GL++PEVSLV I +A ++ + T+GR R NG A+ + + Sbjct: 557 TEVLSRGLNVPEVSLVIIYNA-----AKTIAQYVHTVGRTGRGTNNGVALSFVMVDELAS 611 Query: 562 AKAIGETERRRE---KQQKYNEEHGITPQGLNKKVVDILAL 599 A + + + E ++ + + Sbjct: 612 AYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYR 652 >UniRef50_B6AAR3 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AAR3_9CRYT Length = 942 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/489 (11%), Positives = 137/489 (28%), Gaps = 41/489 (8%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + ++I FP + I + + + + + H + Sbjct: 223 YLQSKDIIKPFPIQMQSIPI--------LMSGKDMIGIAETGSGKTLAYVLPLIRHVIIQ 274 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + ++ + N + + + L++ + S I + Sbjct: 275 KSNNYP-----FNKMERSNTTINTNIHYVTALIIVPTRELALQVYKQTKILSNIVKLNST 329 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRL 368 + G + L + +VV I I + + E L Sbjct: 330 VIC--GGFSISNQLNKLRSGCDIVVCTPGRFIDIISLNYKRVSVFQYISYIVIDEGDRLL 387 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 + Q SAT + + + + G + Sbjct: 388 DMGFAPQLTNILSIIRPDRQCCIFSATFPPVVEQLVNNLLTNPIQVIVGQKGQLTSNVKQ 447 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+ + L ++ + +++ + ++L L +G + LHS D Sbjct: 448 HIELWKDDQEKFYRLLQLLGEWSEFGLIVIFCNRQVEVDELYAQLLPYGYKCFTLHSGQD 507 Query: 482 TVERMEIIRDL-RLGEF------DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +R + + + ++L+ ++ GL + + +V G Sbjct: 508 NNDRHSNLMQFSKSNKVEISSGNNILIATSIFSRGLHIDNILVVINY-----GPPHHIED 562 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I +GR R G + S + E ++ + ++ I K Sbjct: 563 YIHRVGRTGRAGKFGTSFTLLLSSEISQCFDLIELTQKYDNDIVIIDQKVIDSYNNEKIK 622 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 Q K K + S + L+ ++ GL+ ++ NLE+E Sbjct: 623 FCFERSEQTRNKRNRKSNFGFGGKGYKFSKDEKTSLQLLKDDTKKILGLVPEN--NLEYE 680 Query: 654 EAAQIRDQL 662 + +++ Sbjct: 681 PINEFDNEI 689 >UniRef50_A4RXF6 Predicted protein n=2 Tax=Ostreococcus RepID=A4RXF6_OSTLU Length = 346 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 86/304 (28%), Gaps = 40/304 (13%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + L + ++ NE+ + S G P L +VV Sbjct: 73 RNPKCIVLAPTRELAKQVENEICITAP----SLETVCVYGGTPIGQQEGKLRRGVDIVVG 128 Query: 339 ESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + L E L + + + QT SAT Sbjct: 129 TPGRVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQTFLFSATMP 188 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 ++ + + + L +++ + T TKR Sbjct: 189 SWVKQITKKFLK-PGHVVVDL---------------------------DKKAICFTQTKR 220 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A++LT L LH DI +R ++ R F VL+ ++ GLD+ +V L Sbjct: 221 AADELTAALGRR-VASEVLHGDIAQAQRERTLQRFRDNRFSVLIATDVAARGLDISDVDL 279 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V + S + GR R G AI M + I + + Sbjct: 280 VIHYELPN-----DVESFVHRCGRTGRAGQLGAAIAMHTDRESYMIRRIKKETGCEFRTI 334 Query: 577 KYNE 580 Sbjct: 335 GIPS 338 >UniRef50_C6XFC1 ATP-dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFC1_LIBAP Length = 573 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 49/375 (13%), Positives = 110/375 (29%), Gaps = 35/375 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + + + +R A + +A R++ ++ + LE Sbjct: 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + + G E P L D++ GL + V + + Sbjct: 102 G---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + + + + SAT + Sbjct: 159 EMLDLG-----------------FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201 Query: 409 VDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D V + + ++ + + +++ +R A N +V T+ Sbjct: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSR 259 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 T+ L EH +V L ++ ER ++ +R G V + ++ G+D+P++ LV Sbjct: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP-SMAKAIGETERRREKQQKYNE 580 + + +L+ GR R ++ A+ + + Sbjct: 320 E-----LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 Query: 581 EHGITPQGLNKKVVD 595 I + + + D Sbjct: 375 VEAIRERDAQRILQD 389 >UniRef50_B0CQW8 Predicted protein n=4 Tax=Agaricales RepID=B0CQW8_LACBS Length = 450 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/439 (15%), Positives = 125/439 (28%), Gaps = 61/439 (13%) Query: 165 MIID-QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 D + L++ Y+ G + + E Sbjct: 25 ERYDIPPHLFSNLSKCGYSHPTSIQSSG------------------MPVLFE-------- 58 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 ++ + + P ++ L L + E Sbjct: 59 SRDLAAISPTGTGKTLSYLFPVLSKLACPLSASQDPTKKGARALILAPTRELAHQIHNEC 118 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 RLTQ ++ + + ++ S R P L L + H+ Sbjct: 119 LRLTQGRKWRIVLFSKATANSLANKAVRDK-VDIIISTPLRLISSYQDGKLELNSVQHLV 177 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + + + Q SAT + Sbjct: 178 LDEADRLLDREFLPQVQEIVG----------------ACSFSGIQKAVFSATLPAEIEKL 221 Query: 404 SGGDVVDQVVRPTGLLDP--------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + + + GL D + V +++ LL+ + Q VLV T + Sbjct: 222 ALEMLRNPIRVVVGLKDTPLPLISQSLTYVADDPSKLPSLLAYLSQPYNPP--VLVFTSS 279 Query: 456 KRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + A L E L +G V LH+ + ER + I +R G+ VLV +L G+D Sbjct: 280 QPRATSLAEELVLNGISNVDCLHAGLTRKEREDTISRMRQGQSWVLVSTEVLARGMDFQG 339 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V V D F + +S + IGR R GKA+ + K I + Sbjct: 340 VREVINYD-----FPTTVQSYVHRIGRTGRAGREGKAVTFFTDEDGPYLKTIANVILQSG 394 Query: 574 KQQKYNEEHGITPQGLNKK 592 P + +K Sbjct: 395 YTVPDWILKLPKPSKMKRK 413 >UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FX17_SORC5 Length = 632 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 80/286 (27%), Gaps = 32/286 (11%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G G E S P L D+L L + + + M Sbjct: 116 ARVACVTGGTSFGAEARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQMLD 175 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + QT VSAT + D V Sbjct: 176 LG-----------------FRDDLEAIVGKMPGDRQTHLVSATFSREVRALADRFQRDAV 218 Query: 413 VRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 G + + + A + +++ + A ER LV T+ A +L + Sbjct: 219 SVEGTRPGAANGDIAHVAHLVLPAERDAAVVNLLL--LAPGERTLVFVRTREGAAELADK 276 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G R L D++ ER + R G LV ++ G+D+PEV V D Sbjct: 277 LTALGLPARALSGDLEQRERTRTLDAFRSGAITTLVATDVAARGIDVPEVGRVIHADPP- 335 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 GR R G ++L A + R Sbjct: 336 ----GDPEIFTHRSGRTGRAGRKGTSVLLVAPFAREHALRLLRRAR 377 >UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplantae RepID=C0Z3A8_ARATH Length = 617 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 126/404 (31%), Gaps = 39/404 (9%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L Q L Q T + G + P + Sbjct: 180 LILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMI 238 Query: 327 DYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + D + + + + + + A + T + Sbjct: 239 DHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVR-----------------LCPK 281 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLLS 437 QT+ SAT E + + P GL + ++ +R + + Sbjct: 282 RRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVL 341 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +V++ + TK+ A L G + LH ++ +R++ + R E Sbjct: 342 LSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 401 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D L+ ++ GLD+ V V +E S + +GR AR G A+ + Sbjct: 402 DFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFVTD 456 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 S+ K I + + K + E+ + + ++ D Q A A+ ++ Sbjct: 457 SDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMED-----QYSAVISAERDERALR 511 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 E + + + + I+ + + A +D Sbjct: 512 KAEMEFAKAENMLEHRDE-IYARPKRTWFMTEKEKKLVAQAEKD 554 >UniRef50_P39517 ATP-dependent RNA helicase DHH1 n=162 Tax=Eukaryota RepID=DHH1_YEAST Length = 506 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 55/374 (14%), Positives = 111/374 (29%), Gaps = 30/374 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ ++ +TG+ + + +V P V+ + L L Sbjct: 72 IQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 131 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + M+ G + + P + D + D S Sbjct: 132 QVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 190 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + M D F Q++ SAT Sbjct: 191 LFIMDEADKMLSRDFKTIIEQ-----------------ILSFLPPTHQSLLFSATFPLTV 233 Query: 401 LEKSGGDVVDQVVRP---TGLLDPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLT 455 E + L I + + L L+ + + IN + ++ + Sbjct: 234 KEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQIN-QAIIFCNS 292 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E L + + + G Y H+ + ER ++ + R G+ LV +LL G+D+ V Sbjct: 293 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 352 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 ++V D F ++ + + IGR+ R + G AI + I + Sbjct: 353 NVVINFD-----FPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIA 407 Query: 575 QQKYNEEHGITPQG 588 + + Sbjct: 408 AIPATIDKSLYVAE 421 >UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=Lactococcus lactis RepID=O66085_9LACT Length = 455 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 185/280 (66%), Positives = 228/280 (81%), Gaps = 1/280 (0%) Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + QRL QRT +D+EM+ E+GYC+G+ENYSR + GR GEPP TL D+ P D ++ Sbjct: 169 KVQEAWMAQRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMI 228 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 ++DESH+T+ Q+ GMY GDRARKE L YGFRLPSALDNRPLK EEFE+ Q +YVSAT Sbjct: 229 MIDESHMTMGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSAT 288 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 PG+YE+E++ +V+Q++RPTGLLDP++EVRP+ Q+DDL+ EI +RA NERV VTTLT Sbjct: 289 PGDYEMEQTDT-IVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLT 347 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+M+EDLT Y +E G +V+Y+HSDI T+ER EIIRDLRLG FDVLVGINLLREG+D+PEV Sbjct: 348 KKMSEDLTAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEV 407 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 SLVAILDADKEGFLR+ER LIQTIGRAARN G ILY D Sbjct: 408 SLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVILYSD 447 >UniRef50_C4JU32 ATP-dependent RNA helicase SUB2 n=4 Tax=Onygenales RepID=C4JU32_UNCRE Length = 564 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 44/332 (13%), Positives = 95/332 (28%), Gaps = 35/332 (10%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY---SRFLSGRGPGEPPP 323 L L E R ++ + G + S+ P Sbjct: 253 LVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIETLSSKDTYPNIVVGTPG 312 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + L + + + + M + + Sbjct: 313 RLNALVREKKLSLRNIKAFVLDECDKMLDQ----------------IDMRRDVQEIFRAT 356 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLL 436 Q + SAT + + + ++ ++ + L Sbjct: 357 PAEKQVLMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYFIKLSESEKNRKL 416 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +E+ N +V++ + A +L + L E +HS + ER++ ++ + Sbjct: 417 NELLDNLEFN-QVIIFVKSTSRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFN 475 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 + V ++ G+D+ ++L D S + +GRA R G +I + Sbjct: 476 KRICVATDVFGRGIDIERINLAINYDMP-----ADADSYLHRVGRAGRFGTKGLSISFVS 530 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 K + + E+R E E G+ Sbjct: 531 SED--DMKVLKDIEKRFEVALPEYPEEGVDAS 560 >UniRef50_A8LRE5 DEAD/DEAH box helicase domain protein n=57 Tax=cellular organisms RepID=A8LRE5_DINSH Length = 730 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 53/394 (13%), Positives = 111/394 (28%), Gaps = 36/394 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +++ + D + L F + + A + +A Sbjct: 21 TPVQIAVSDPALVEADLL-VSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAPLGLVIAP 79 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 R++ ++ + LE + G + E + P L D++ Sbjct: 80 TRELAMQVRRELEW-LYGPAGAQITSCV--GGMDARDERRALGRGAHVVVATPGRLRDHI 136 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + V + + M +T Sbjct: 137 ERGNIDLDAVRAVVLDEADEMLDLG-----------------FREDLEFILGAAPSERRT 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQR 442 + SAT + D T + V + + +++ +R Sbjct: 180 LMFSATVPPAIASLAQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYY 239 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A N +V T+ M LT G +V L ++ ER ++ +R G V V Sbjct: 240 EAAN--AIVFCNTRAMVNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVA 297 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ G+D+P + LV + S +L+ GR R G + + Sbjct: 298 TDVAARGIDLPNLELVVHAELP-----SSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKK 352 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 A+ + + + + Q + + D Sbjct: 353 AERLLKWAKVTPDWVSPPSAEDVRAQDAARLLED 386 >UniRef50_C5L4T1 ATP-dependent RNA helicase dbp-10, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5L4T1_9ALVE Length = 977 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 49/353 (13%), Positives = 104/353 (29%), Gaps = 44/353 (12%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 L+ + ++ + + L G + FD L ++ +++ Sbjct: 103 AVILSPTRELAMQTIKVTRMLGKFTDLRLCL--IVGGHSMESQFDRLSSNPDVLICTPGR 160 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + + R + E + + + Q + SAT + Sbjct: 161 LVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFSATLPSQLT 220 Query: 402 EKSGGDVV---------DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA-------- 444 + S + D + LD ++ L++ +R+ + Sbjct: 221 QFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKLQSMSNKSTGD 280 Query: 445 ------------------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + +V T+ E L + G ++ +D +R Sbjct: 281 ATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQTQRT 340 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + R G+ VL+ ++ G+D+P++ V D F S + + GR AR Sbjct: 341 SSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYD-----FPSSSKLFVHRCGRTARAG 395 Query: 547 -NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G A + R+ Q +H I +G + VD Sbjct: 396 AKGLCASLVTHDDMPYAVELMLFLGRKLGLQALGSDHPIPAEGEGEGEVDEKR 448 >UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intestinalis RepID=A8BQS0_GIALA Length = 900 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 106/335 (31%), Gaps = 18/335 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 +A I+ + A + L + + + G + + + Sbjct: 97 GCHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALTAN 156 Query: 315 GRGPGEPPPTLF---DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D + + +V + M+ + ++ + Sbjct: 157 PDIIVCTPGRILHIHDQVSTFKSQLKSIEYVCFDESDRMFEMNFQQQVNEILDLLPAERT 216 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPII 423 + + L Q I VSAT N S + + + + I Sbjct: 217 GGHITETRSARDFLGYQIIMVSATMPNNLAVFSKARLQNPTIIAAENDMVLPNELTNQFI 276 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 P+ + LL R+ R+LV TK E LT L+ + R ++ +D Sbjct: 277 Y-CPINYREAALLYICRELVPKTWRLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQK 335 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + G + +L+ ++ G+D+P ++ V + G ++ + +GR+A Sbjct: 336 QRTLALSEFDKGRYSILISTDVAARGIDIPNLNCVINYNFPSSG-----KNYVHRVGRSA 390 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 R + G + + + + + Sbjct: 391 RAGSYGLCVSIIEGDELPYCLDVMLHIGIKFHSMR 425 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 93/664 (14%), Positives = 221/664 (33%), Gaps = 80/664 (12%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 S D L GV+ + K + + +RP + + + A + Sbjct: 3 ESILSAATFLNKINYTADKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKE 62 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 Y + + E + Y P+ E S + + R++ K + Sbjct: 63 TYLNLSDILSEKDIL-------------YYPAKPITHEFIDSHSMELTNKRVNVIKNAVM 109 Query: 133 RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 ++V S++A G ++ I+D + L + YAR + +G Sbjct: 110 GSKKIIVTSINAAIEKGL-FWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGA 168 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + V+G ++D+F D++ +R+E FD+E++ + FD TG+ + I +FT+ P + Sbjct: 169 YSVKGGIVDVFIMG-DEVPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLD 227 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + I + ++++ +L + + L ++ D + + + + S Sbjct: 228 YDEINKLNKKVRAKLEKAITQNEDEEIDKNYRELYEKIADDTNDTTKYIFYASKQTKS-- 285 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L D L D L++ D+ + ++ ++ + L E+G L + Sbjct: 286 ------------LID-LYKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQV 332 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 +N E S + + + D + D I + Sbjct: 333 NNHFKFAEA---EERFINLDSLIYFDLSMASNNLFCKD--IVEVKSSDNI----NYVKNI 383 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L+ I + +V++T ++ ++L+E+L + + + Sbjct: 384 NYLIDNIVTYLKEDYKVIITYKNEKEKKNLSEFLSNYNI---------------DYTHTV 428 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + G V + + +R G+++ L + D +++ + Sbjct: 429 KEG--HVALVKSNIRNGVNILSEKLFILSYNDVLIKKEAKKK-------RTKKDKHNEKA 479 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + +IT +Y + GL ++I G + Sbjct: 480 FFSEIT-----KGDYVVHETYGIGRYLGMVNMEAGGLYNDYLEIEFAGNDKL-------- 526 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELF 669 + + V + K+++L + ++ +N + ++ + L R Sbjct: 527 -YVIANKMNLVSKYIGSSDAPPKLNKLGSQVWENTKNKTRKAVKELAKEYITLYAKRREI 585 Query: 670 IAAS 673 + Sbjct: 586 KGFA 589 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/476 (14%), Positives = 131/476 (27%), Gaps = 43/476 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEE 262 A S D + E D + V + YP + + Sbjct: 589 AFSADTPWQKEFEDN---FGYELTEDQERCVREVKEDMEKPYPMDRLICGDVGFGKTEVA 645 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + A + Q +E + LS + Sbjct: 646 ARAIFKAVMDGKQCAVLVPTTILAMQHYNTFVERFKDFPV------KIEMLSRFKTKKEE 699 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D L + +V +H + + + Sbjct: 700 NRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVVDEE--------QRFGVAHKDKLKL 751 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQ 441 T+ +SATP L S + D + V D ++ I + Sbjct: 752 LKENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREETETYVIEYDDYIIKDAINR 811 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V + + AE L + G +V + + + E + + EFDV Sbjct: 812 ELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEFDV 871 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV ++ GL++ + + I + + G + L Q GR R+ A Y Sbjct: 872 LVCTAIVENGLNILNANTMIIKEGNNLGLSQ----LYQLRGRVGRSNK-NAYCYVT---Y 923 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 KA+ E +R K + G G + D+ G + Sbjct: 924 EKDKALNEVAMKRLKAINEFTKFG---SGFQIAIRDLQIRGSGNLLGANQSG-------H 973 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLE---FEEAAQIRDQLHQLRELFIAA 672 NV ++ K LQ+ + E +G + A + + ++ I Sbjct: 974 FTNVGYELYTKMLQEALKESKGEAQKEPVETTINIKINAYIDKKYIEDEKQRIITY 1029 >UniRef50_Q0AR94 DEAD/DEAH box helicase domain protein n=10 Tax=Proteobacteria RepID=Q0AR94_MARMM Length = 787 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 45/381 (11%), Positives = 103/381 (27%), Gaps = 35/381 (9%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + + ++ + + +A R++ L+ + L + Sbjct: 42 VSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAW-LYGE 100 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G E + P L D++ Sbjct: 101 ARGQIASCV--GGMDPRAERKALERGCHIVVGTPGRLRDHIERGA--------------- 143 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + L E L + + +T+ SAT + + Sbjct: 144 --LDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASRRTLLFSATVPRAIADIARRFQ 201 Query: 409 VDQVVR-PTGLLDPIIEV------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + ++ + + + +++ +R ER ++ T+ Sbjct: 202 KDALRISTVSERGQHADIEYRALSVAPSDRENAIINVLRYY--DAERAIIFCATREAVNR 259 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L G L ++ ER ++ LR G V V ++ G+D+P + LV Sbjct: 260 LAARFGNRGFAAVALSGELTQKERTHALQALRDGRARVCVATDVAARGIDLPGLELVIHA 319 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS-MAKAIGETERRREKQQKYNE 580 D + L+ GR R T A + + + + + Sbjct: 320 DLPT-----NSDVLLHRSGRTGRAGAKGVCAIIVPHTRRGRANRLLRDAKLQAEWAEAPS 374 Query: 581 EHGITPQGLNKKVVDILALGQ 601 + + + + D + Sbjct: 375 SDDVRARDRERLMADPILTEA 395 >UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianus RepID=C7JD45_ACEP3 Length = 400 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 46/333 (13%), Positives = 85/333 (25%), Gaps = 24/333 (7%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE------LGYCSGIENYSRFLS 314 A L ++ + T+ + + + G + L Sbjct: 51 TGKTAAYALPLSQKLLKSRKPRFVLVLVPTRELVLQVEKVFRTCLGESKKGQKQTPVTLV 110 Query: 315 GRGPGEPPPTLFDYLPA--DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSA 371 G +L +++ + + + L E Sbjct: 111 PLFGGSDRAEQEHFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPE 170 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIE 424 + QT+ +SAT + V G + Sbjct: 171 FQEDTETLLSYLPSMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAAL 230 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + A R +V TK A+ L L++ LH DI + Sbjct: 231 FLDPTQKPGFIKEFFSR--APKMRSIVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDK 288 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + G +LV ++ GLD+P V V D + + IGR R Sbjct: 289 RTSTVASFESGRLFILVATDVAARGLDVPSVKQVINYDVP-----DQPETYLHRIGRTGR 343 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 G A+ + I + + Sbjct: 344 GGEKGSALTLCTMDDRQSLRQIEVGAHVKLRII 376 >UniRef50_P90897 Protein F58G11.2, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=P90897_CAEEL Length = 958 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 48/384 (12%), Positives = 107/384 (27%), Gaps = 33/384 (8%) Query: 228 DPLTG--QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE-NNKLLEEQ 284 D L F + + E + LA E ++ E Sbjct: 418 DVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILAPTRELAAQIHEAL 477 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 R + + +++ + D+ + ++ + Sbjct: 478 RTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVKSHISLLHLRFLVF 537 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + + + + A QTI SAT + + Sbjct: 538 DEADRLLQDMKKDPLGHLGAIIK-DAGFME--------SAATRQTIMTSATFNASVMTVA 588 Query: 405 GGDVVDQ--------VVRPTGLLDPIIEVRPVATQ----VDDLLSEIRQRAAINE--RVL 450 + +V G L + + + + L EI ++ + + + Sbjct: 589 NELMKRLPGQDEMIKIVLANGRLSKRVNLEFFECKGLAEKNAKLREILKQNVNGKTLKTI 648 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + K + L G + LH D R ++I D + ++LV +LL G+ Sbjct: 649 IFVQKKDQCDACAAKLTSGGMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGI 708 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKAILYGDKITPSMA----K 563 D+ ++ V D + + I GR R G + + D + + K Sbjct: 709 DVSDLDRVINFDLPDGDPDQGADTFIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPK 768 Query: 564 AIGETERRREKQQKYNEEHGITPQ 587 + + K + + Sbjct: 769 LVELIISQNLPDLKVPDFLDAMAK 792 >UniRef50_B1YL87 DEAD/DEAH box helicase domain protein n=2 Tax=Exiguobacterium RepID=B1YL87_EXIS2 Length = 450 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 54/436 (12%), Positives = 112/436 (25%), Gaps = 36/436 (8%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F + + + + + ELA + L++ L ++ Sbjct: 45 QSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHEELKS-------ILVKQ 97 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + G + +S + P + D L H I + Sbjct: 98 PDYIKTSLITGGMDRERQIGRVKVSPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQ 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + + Q + SAT + Sbjct: 158 MLDMGFLPEVD-----------------RIAQALPEKLQMMVFSATIPEKLQPFLKKYMN 200 Query: 410 DQVVRPTGLLDPII-----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + PV + L+ +A LV T TK A +L Sbjct: 201 NPRYAHVDPKQQTAKKIVHHTVPVKHRDRSDLTLKLAKALNPYICLVFTNTKTEAIELEA 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 E G V LH D+ R + I+++ ++ ++ +L G+D+ VS V Sbjct: 261 LFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQYVIVTDLAARGIDISGVSHVIN---- 316 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 G + + +GR R + +G A + + + Sbjct: 317 -HGIPKDLDFYVHRVGRTGRVDQDGLAYTLFEDHENGSINRLEDR-GIEFINVDVKSGQV 374 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + + + A ++ G K + E Sbjct: 375 SEVKERRRAKPHMKTAVSKTAHSRLSGEAAKAKKRVKPGYKKKHQYKLKETAKRERIKEQ 434 Query: 644 MQHAQNLEFEEAAQIR 659 + A++ + Sbjct: 435 RGIGRAERKANASKNK 450 >UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VX62_MARMS Length = 452 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 39/350 (11%), Positives = 86/350 (24%), Gaps = 27/350 (7%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I + ++ + L L E +LT Sbjct: 114 QAQTGTGKTAAFLIAMISDFLDYPLE-EKRANNFARGLIIAPTRELAIQIADEAVKLTSN 172 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 ++ + + + P L D+ + + + + + + Sbjct: 173 CHLNVVTLVGGLSYEKQKIALETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADR 232 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + QT+ SAT + Sbjct: 233 MLSMGFIPDVKSIIR---------------MTPHKETRQTMLFSATFPKDIQALAQQWTY 277 Query: 410 DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAAI--NERVLVTTLTKRMAEDLTE 464 + I+ + D ++Q +R ++ + DL E Sbjct: 278 FPKEVSVVPKEATNQNIDQVIYTVEADQKWPVLQQLIEKNGGQRTIIFANRRDETRDLYE 337 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + L ++ +R++ + + + G VLV ++ G+ + V LV Sbjct: 338 RLRKANINCAILSGEVAQDKRVKTLANFKEGIIQVLVATDVAGRGIHVDNVELVVNY--- 394 Query: 525 KEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + I GK++ + + M I Sbjct: 395 --SLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFMIPEIERVVGESI 442 >UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XCU0_CAEBR Length = 1248 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 49/398 (12%), Positives = 109/398 (27%), Gaps = 36/398 (9%) Query: 227 FDPLTG--QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 +D + F + + + + I V +++E Sbjct: 702 YDVIGQAETSAGKTAAFGLPIVDYILKMDQNIRDEGFGTSPIALVIAPVRELAQQIVESF 761 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 R + L D + + + + + Sbjct: 762 RQYACGTDIKIRLAIGQQSRARCLADIREGCDVVVGTSGRLMDLIGKGEVCLDHLKFLVL 821 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + + + N A QT+ SAT N E + Sbjct: 822 DEADRLLQDVKQDPCGHLGAIINDHDFMRN---------ADNRQTLMTSATFDNAVEEVA 872 Query: 405 GGDVV------DQVVR--PTGLLDPIIEVRPVAT----QVDDLLSEIRQRAAINE--RVL 450 + D V +G L +++ + D L + E + L Sbjct: 873 NRLMKKVDGQNDLVRIVLASGRLSNRVDLHFHEAGGAAKHDTLKKILLDTNERGEIPKTL 932 Query: 451 VTTLTKRMAEDLTEYLE------EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + K + L ++ E V+ LH D R I + G +LV + Sbjct: 933 IFVQKKASCDFLASKIQMIGQKLEKDFGVQTLHGDRSQDNRDNTISAFKNGSLKILVTTD 992 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 +L G+D+ ++ V D + I GR R G + + + + Sbjct: 993 VLSRGIDVVDLERVVNFDLPDGSVETGVDTFIHRSGRTGRMHKGTCHSFINPGFDNDVRL 1052 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + + + ++ + + ++++ G N Sbjct: 1053 VPKLIELVKSTGNPDDL-----AKVPEFMLELAKRGSN 1085 >UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2G6R5_TRIVA Length = 865 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 107/361 (29%), Gaps = 45/361 (12%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I T+ + ++ + ++ E + + Sbjct: 531 QTGSGKTAAYLIPAITYVINQNKKRGPHVL-------IMANTRELVKQIQEFGEILTKNT 583 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P L D++ + + V I + M Sbjct: 584 SVKVAVAYGGENNRRQQIRDIAGADIIAAAPGRLLDFIRNNNIKPESIGIVVIDEADKMV 643 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 D + QT+ SAT + + + + Sbjct: 644 SNDFEP-----------------QCKAVISRCPKNIQTLMFSATWPDEVQFMAQNYLGEY 686 Query: 412 VVRPTGLLDPIIEVRPVA---TQVDDLLSEIRQRA---------AINERVLVTTLTKRMA 459 + + I + + D L ++ + ++++ TKR Sbjct: 687 IRVIVNSRELTININIKQMVIEKDRDSLRQLGEIVEGIKRSKGNESYPKIIIFCKTKRTV 746 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV-LVGINLLREGLDMPEVSLV 518 E+ +YL H +V Y H D++ ++R + + + + + +V +L G+D+ +++ V Sbjct: 747 EEAHDYLAPH-IKVVYTHGDVNQIDREKALNAFKHANYPIAMVCTAVLSRGIDVNDITHV 805 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD-KITPSMAKAIGETERRREKQQ 576 LD S IGR R G AI D + + + + + + Sbjct: 806 VNLDMP-----DSITEYAHRIGRTGRMDRTGVAISLFDRRKDDRLRYELRKYMEQAGQDI 860 Query: 577 K 577 Sbjct: 861 P 861 >UniRef50_B4L0G8 GI13618 n=8 Tax=Eumetazoa RepID=B4L0G8_DROMO Length = 595 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 127/431 (29%), Gaps = 39/431 (9%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCS 304 + L L E LT+ T + ++E Sbjct: 180 FLTPIINGLRCHKTTGLRALVLAPTRELAQQIYRECGELTKGTGLRTHFISKVSEAKQQY 239 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLV 362 G E ++ P + L L + + + + + + + Sbjct: 240 GPECKQKY---DILISTPNRVRFLLQQQPPLLDFKSIEWLVLDEADRLMEEGQNNFKEQL 296 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----L 418 + + + + SAT + + + + V G Sbjct: 297 DD-------------IYAACTNPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSA 343 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYL 476 D + + L +R+ + VLV +K A+ L E L G V + Sbjct: 344 TDTVKQELLFVGSESGKLLAVREMVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVI 403 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H++ +R +R R G VL+ L+ G+D V+LV D F S+ S I Sbjct: 404 HAERTQHQRDNCVRAFREGHIWVLICTELMGRGIDFKGVNLVINYD-----FPPSKISYI 458 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV- 594 IGR R G+A+ + + + ++I + + + K+ Sbjct: 459 HRIGRTGRAGRPGRAVTFFTQDDTANLRSIAQIIKNSGGEVPEYMLQMKKVSKSEAKMRS 518 Query: 595 -DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA--LQQKIHELEG--LMMQHAQN 649 L K + + S + + D + K + I++ + M + + Sbjct: 519 KKPLDREDITTKIRPETPKNSVKLQKIDKAEKVLKRKGNTDKNSINKAKKLGKMKEQLKG 578 Query: 650 LEFEEAAQIRD 660 + + Sbjct: 579 KAPLAKGKAKK 589 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 82/631 (12%), Positives = 168/631 (26%), Gaps = 120/631 (19%) Query: 47 FTIANVIADL--QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 N+ L + +++AP+ A LY + + +A + Q Y Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSA---------WQQTLYYFSD 65 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMM-LHLTV 163 +T + + + R+ + +V+ S SA P +L +H V Sbjct: 66 WETLPYDHYTPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAV 125 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G I Q+ ++ RL + Y ++G + RG ++D+FP + +R+E D+E++ Sbjct: 126 GDHIAQKTVINRLLQAGYQSTHFISEKGEYATRGNIVDLFPM-AAQTPIRLEWLDDEIDS 184 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + FD T + + +I P V + ++ Sbjct: 185 IRFFDLKTQLTLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGEHI------------ 232 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + ++E G+E Y + L DY P++ + Sbjct: 233 -----HQSGIYQSLSEGRTPQGLEYYLPLF-----FDETAHLLDYFPSNTCYIP------ 276 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + ++ R E LAP+ ++ S L Sbjct: 277 ---ADELA--------VSLQNHDDYCHKRYQRLNHLRENSLLAPEQLWFSPQELQERLAT 325 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + D + Q + ++ R + L Sbjct: 326 LPTHMPKNRCTALPFSDETPRGQQWLEQFATAERAVLHFSSQGLREYWF-------DRLY 378 Query: 464 ---------EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + L + + L + Sbjct: 379 QEYPQCLISDELPPKNYPALCIS---------PLQYSFCADGITHLAETD---------- 419 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 R+ + Y I + Sbjct: 420 -----------------------------RHGSHTTPNYRQNKHKDAGAIIQSLQDLTLG 450 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + +HG+ + + D + AKG I + D + + Sbjct: 451 APVVHIDHGVGRYRGLEMIDDDEM----LVIEYAKGARLFVAISDLDLISKYSGTASENA 506 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +HEL G + Q+A+ + A +L + Sbjct: 507 PLHELGGKVWQNAKKKAQQTARDTAAELLAI 537 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 57/453 (12%), Positives = 125/453 (27%), Gaps = 44/453 (9%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + P V + ++ AA Sbjct: 569 PDQQAAIDAVLNDLQQAKPMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLA 628 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q L+ + + +S + L + +V +H + + Sbjct: 629 DQHVHNFLDRFSHIAV------RIAAISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQK 682 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 R + + + + + ++ATP L + Sbjct: 683 DIAFARLGLVIVDEE--------HRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALS 734 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEY 465 + D + T ++ ++ E + ++ + + Sbjct: 735 GLRDLSIIATAPAGRQSIQTIISQYDPIVIEEACERELNRGGQIYFLHNDVSSIDRIARA 794 Query: 466 LEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L E + H + +I++D +D+LV ++ G+D+P + + I A Sbjct: 795 LSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIIINRA 854 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + Y ITP+ + + + +RR E Sbjct: 855 DKLGLAQ----LHQLRGRVGRSHHQ---AYAYLITPA-WQTLNKDAQRRLSA---FTELD 903 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE--- 640 G D+ G + + + M L++ L+ Sbjct: 904 SLGAGFLLASQDLEIRGAGEILGDEQSG-------QIQQIGMSYYLDLLERATAALKSGQ 956 Query: 641 ---GLMMQHAQNLEFEEAAQIRD-QLHQLRELF 669 + ++ EAA + D + + Sbjct: 957 DFNQEEIAVRYQIDIGEAALLPDTYVFDPQIRL 989 >UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEI7_TOLAT Length = 468 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 97/367 (26%), Gaps = 19/367 (5%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + L + ++ +L + L GE L ++V Sbjct: 72 RGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSL--VLGGENFNDQIKALRKTPEILVA 129 Query: 339 ESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEALAPQTIYVSAT- 395 + + + D L E L + QT SAT Sbjct: 130 TPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLRQTWLFSATL 189 Query: 396 PGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 SG + G ++ + + LL + ++ Sbjct: 190 NNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHLLS-QPDYQQ 248 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V T+ E L + E L D+ +R ++I G VL ++ Sbjct: 249 AIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVLFTTDVAAR 308 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD+ VSLV D + I IGR R G A+ + + Sbjct: 309 GLDLLHVSLVVNFDMP-----KLPEEYIHRIGRTGRAGNQGNAVSLISPKDWVSFQGLMA 363 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 +RR G L +K G + R + + Sbjct: 364 LQRREVTFTVIPGLEGRFKGVLAQKNTKFSGKGAHPLAEAKAAAQGKRSFNKNTATKGPV 423 Query: 628 SPKALQQ 634 ++ + Sbjct: 424 RKESKNR 430 >UniRef50_Q12Q06 DEAD/DEAH box helicase-like protein n=14 Tax=Gammaproteobacteria RepID=Q12Q06_SHEDO Length = 465 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 96/328 (29%), Gaps = 28/328 (8%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + K + + ++ +EL + N + + G Sbjct: 91 LLLQAKEKSVAQDKPSALVIVPTRELAQQVHHELNTVAMKLNLTSAIVC--GGADLDKQI 148 Query: 327 DYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L L++ + + + L E L K F Sbjct: 149 DALAQGPQLLIATPGRLLALVQEKAVSLSDIKHLVLDEADRLLEMGFWPDIQKIIAFIPA 208 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSE 438 Q + SAT E + + ++ + ++ L++ Sbjct: 209 NCQKLLFSATLPVPLRELADSLLYKPQRIEAKAASTQVAEIEERAYLVNKGSKAQALIAL 268 Query: 439 IRQ------------RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 ++ + + LV K A+ L + L + G + LH D + R Sbjct: 269 LKDAPLKQAGNKQTGIKQPSLQTLVFINGKDDADSLAKKLNKAGLNAKALHGDKEQNIRE 328 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + + + G VLV +LL G+ + E+ V S + + IGR R Sbjct: 329 QTLAEFKQGTVTVLVATDLLARGIHLSELPQVIN-----FALPESGATYVHRIGRTGRAG 383 Query: 547 -NGKAILYGDKITPSMAKAIGETERRRE 573 G AI +AI +R Sbjct: 384 AKGLAISLVCHGESQYLEAIEAFTQRPL 411 >UniRef50_C4JDV3 ATP-dependent RNA helicase DDX18 n=2 Tax=Fungi/Metazoa group RepID=C4JDV3_UNCRE Length = 568 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 47/404 (11%), Positives = 105/404 (25%), Gaps = 41/404 (10%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 T+ + R + + + L + L Sbjct: 131 SEKTLKAIQDMGFETMTEIQRRGIPPLMAGTGVIVVSPTRELALQIFGVARELMAHHSQT 190 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYR 352 + G E P L D+L DG + + + I + + Sbjct: 191 Y-GIVIGGANQRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILE 249 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-Q 411 + + + + QT+ SAT + + + Sbjct: 250 VGFEDQMRQI----------------VKILPSEDRQTMLFSATQTTKVEDLARISLRPGP 293 Query: 412 VVRPTGL---------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + L+ + + L S +++ ++++V + + Sbjct: 294 LYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLKRNLK--KKIIVFFSSCNCVKYH 351 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E L V LH +R + + L+ ++ GLD+P V + D Sbjct: 352 AELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFD 411 Query: 523 ADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 R I +GR AR G+++L+ K + + E Sbjct: 412 PP-----DDPRDYIHRVGRTARGANGKGRSLLFLQPSEVGFLKHLKDAR----VPVVEFE 462 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++ ++ + K+ G ++ Sbjct: 463 FPAKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLR 506 >UniRef50_D1H1T0 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1H1T0_VITVI Length = 611 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 77/270 (28%), Gaps = 27/270 (10%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V + E L L E + T+ G G + Sbjct: 355 LVHVSAQPPLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTK-IRSTCIYGGAPKGPQI 413 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P L D L A + +++ + + M + Sbjct: 414 RDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIR-------- 465 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLD 420 K QT+Y SAT + + + G + Sbjct: 466 ---------KIISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQ 516 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 ++EV + + L+ + + R+L+ TK+ + +T + G +H D Sbjct: 517 QVVEVVTETEKYNRLI-RLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDK 575 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + ER ++ + + G ++ ++ GL Sbjct: 576 NQAERDWVLAEFKSGRSPIMTATDVAARGL 605 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 56/412 (13%), Positives = 123/412 (29%), Gaps = 35/412 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 P + + ++ A + Q + Sbjct: 539 KKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSFSQR 598 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M++ LS + + + + +V +H + + + Sbjct: 599 MSDFPI------KIATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQKDINFQKLGLL 652 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + + +SATP L S + D T Sbjct: 653 VVDEE--------QRFGVESKEALKRMRVNVDILSMSATPIPRTLYLSMTGLRDFSTILT 704 Query: 417 GLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + V + D+++ IR+ +V + E++ L+ Sbjct: 705 APHNRKPVRTIVTKENDEIIEVAIRRELERGGQVYYLHNRVKTIENVALKLKRQFPEANI 764 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L H +D E ++ + G+ +LV ++ G+D+ + + I AD+ G Sbjct: 765 LIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVIDRADRFGLS---- 820 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 SL Q GR R+ Y + P +AI + + R + + G G + Sbjct: 821 SLYQLRGRVGRDHRQ---AYCYLLMPRD-EAIMDNAKERLSALRKHTHPG---AGFKLAM 873 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 D+ G + V ++ + L++ + +L+G + Q Sbjct: 874 RDLEIRGAGNMLGSQQSG-------HIAAVGFELYCQLLKKSVEDLKGSIHQ 918 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 87/217 (40%), Gaps = 8/217 (3%) Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE---HIEQMRLSATKAMLE- 132 + F + E + + YQ + +P+ D + + + ++ I+ R +L+ Sbjct: 45 LCVFETSSKAESCFNEFKKYQSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQLLQN 104 Query: 133 -RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQ 189 V++ SV+++ + P L L L + + E+ + Q Sbjct: 105 RGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSL 164 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG ++D+F +R++ FD+E++ L LFD + + ++ + + P Sbjct: 165 PGEFSLRGGILDVFSP-DQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVEKC 223 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 I++ ++ K + + + E+ +L Sbjct: 224 GLEPRGILEYIKGFKLCVVEEESIDRHLERYQEKVQL 260 >UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Streptococcus suis 98HAH33 RepID=A4VYI1_STRS2 Length = 320 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 134/323 (41%), Gaps = 33/323 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + I + + GL Q LLG++G+ K+ +A L M++ + A Sbjct: 3 ILDLLHKNKQINQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ V F + D+ I + ++ Q R+ + + Sbjct: 62 EKLVADLTAIIGSENVYNFFT-------------DDSPIAEFVFASKERTQSRIDSLNFL 108 Query: 131 LER-RDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + ++VAS V+ L P+ Y + L VG I+ +++ L + Y + + Sbjct: 109 TDSTSSGILVASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVL 168 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 +G F RG+++DIF +S+ R+E F +E++ + +FD + + + + +I P + Sbjct: 169 TQGEFSQRGDILDIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASD 227 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + E +A + I+ +E+ L ++ + E++ ++ + Sbjct: 228 IILSSEDYSRASQYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPD 273 Query: 309 YSRFLSGRGPGEPPPTLFDYLPA 331 +FLS E TL DYLP Sbjct: 274 LRKFLSCIY--EQSWTLLDYLPK 294 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 89/628 (14%), Positives = 195/628 (31%), Gaps = 89/628 (14%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 ++ + + ++P ++ N+ A+ LY E+K V Y+ Sbjct: 26 HLSVVQEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHLDENANVVYYNHE------ 79 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKM 157 ++ + +E ++ R+ A ++ + + A P ++ Sbjct: 80 -------ESLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKAS 132 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 ++++ G + + R L L Y R + T+ +RG V D+F + + LR+E F Sbjct: 133 IINIKTGDEWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQ-PLRIEFF 191 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D EV+ L FD + +S + TI T + I + + ++ L + Sbjct: 192 DVEVDSLRYFDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIH 251 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++ +++ L Q QFD+ + L + S +L P + + Sbjct: 252 -EMEQKRELLQMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSP---IEAIERTLKQNA 307 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +SH I + M + F A FE + SA Sbjct: 308 LDSHTFIEEQYEMNQMIFVSDIFE---SFERIKAKHTHREIFEYQTEGEVFIPWHSANIV 364 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + +E++ + + + + ++D + + Q + +VL T Sbjct: 365 SESIEQTMKWLKK------EAITQKVIITLDEDTMEDFIKIMLQ-QGVEYQVLTDKPT-- 415 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 +G + Y H + G + +++ Sbjct: 416 ----------SNGIYIDYGH----------------------------ITSGFILEDLNT 437 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 V + + + +A S + R+ K Sbjct: 438 VVYTANELYKYKKKMFRYDNKFLKAE-----------SLSQLSDLDTLDYVVHRQYGIGK 486 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 Y +G++K + IL + + R + + + +S Sbjct: 487 YMGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLS--------- 537 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +L Q + ++ A + D+L L Sbjct: 538 KLGTSTWQKNKERIKQDVADVADKLVTL 565 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 59/429 (13%), Positives = 138/429 (32%), Gaps = 35/429 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ E D T P + + I+ A Sbjct: 587 FEDAFEYELTQDQKTAIDEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQV 646 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + E +++ + IE +RF+S + E + D + + Sbjct: 647 VFLCPTTILSQQHARTLKERLSD--FPVTIEVLNRFVSDKEKNEIIQRVKD----GKVDI 700 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + +G + ++ + +SATP Sbjct: 701 LVGTHRVLSRDVKFKDLGLLIIDEEQRFGVEHKER--------IKEFKVSVDVLSLSATP 752 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLT 455 L+ S + + + + + + +++I + + +V Sbjct: 753 IPRTLQMSLIGLRSLSQLNMPPSNRLPVMTYIIEKNQKTINDIISKELNRDGQVFYLFNN 812 Query: 456 KRMAEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + H V +H ++ E +++ E +VLV ++ G+D+P Sbjct: 813 VEQIYSVASVIANHVEAANVAVVHGQMERHEIEDVMIRFISKEINVLVCTTIIETGIDIP 872 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + +A + G + L Q GR R+ + Y + P+ + + E ++R Sbjct: 873 NANTIIVDNAHRFGLSQ----LYQIKGRVGRSDR---LAYAYFVVPNK-RGLTELAQKRL 924 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K + G G + D+ G + D V +D+ + L+ Sbjct: 925 QAIKEFTQLG---SGYKIAMRDLTIRGAGELLGGNQSGF-------IDTVGIDLYVQLLK 974 Query: 634 QKIHELEGL 642 + I + +G Sbjct: 975 EAIAKRQGK 983 >UniRef50_A0M3C7 RhlE-like DEAD box family ATP-dependent RNA helicase n=10 Tax=Bacteroidetes RepID=A0M3C7_GRAFK Length = 455 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 64/437 (14%), Positives = 129/437 (29%), Gaps = 18/437 (4%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + + + L R + K + Sbjct: 26 DLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLLRMLKYSEQKNPRILIMV 85 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ- 346 + ++++ E+ + N ++G G T L +VV Sbjct: 86 PTRELVVQVVEEIEKLAKYINLR--VAGVYGGVNINTQHQDLMQGLDIVVATPRRLYDLV 143 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + + +K + E L + E Q+I SAT E Sbjct: 144 LRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQSIMFSATMTETVEEMIDT 203 Query: 407 DVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + +D P +LL + ++VL+ KR+A Sbjct: 204 NFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLLKHLLADTETYQKVLIFIGDKRIA 263 Query: 460 EDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + L E L E +H+ R++ + D G +L+ +++ GLD+ VS V Sbjct: 264 DRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRILIATDVMARGLDIENVSHV 323 Query: 519 AILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + + IGR R G+++L+ + AI E + + Sbjct: 324 VNFDTPQY-----PENYMHRIGRTGRAEKKGQSLLFTTEAEQEYLDAIEELMQTEVPKYD 378 Query: 578 YNEEHGITPQGLNKKV-VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 EE I + + ++ I + +A + + + QK Sbjct: 379 LPEEVEIATELIPEEKPRAIEINNPHNVTEEAGPAFHEKKDKNKKVNLGGSYRREIAQKY 438 Query: 637 HELEGLMMQHAQNLEFE 653 + + ++A + Sbjct: 439 KKPKTRGDKNANRRRKK 455 >UniRef50_Q09775 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosaccharomyces pombe RepID=ROK1_SCHPO Length = 481 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 99/331 (29%), Gaps = 30/331 (9%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +++ + + L + ++L+ T + +++ + Sbjct: 100 YLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEK 159 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 P L + L + + ++ + + Sbjct: 160 APKLREKYDMCIGTPMRLVQAIQTG-LSFEKVEFFVMDEADRLFEPGFIEQTDHIL---- 214 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLD 420 + SAT + E + VD + G +D Sbjct: 215 ------------SACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSID 262 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + T +L ++ + RV++ A+ L L V +H ++ Sbjct: 263 QRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGEL 322 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R E + R GE VL+ +LL G+D V +V D F +S S I IG Sbjct: 323 PQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFD-----FPQSVHSYIHRIG 377 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETER 570 R R G+A+ + K K I R Sbjct: 378 RTGRAGNTGQAVTFFTKEDGEYIKLIAGVMR 408 >UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA Length = 640 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 94/337 (27%), Gaps = 53/337 (15%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM-MNELGYCSGIENY 309 + +A E + +++ + G + Sbjct: 144 LIHIDQQPRLRRGDGPIALILAPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQD 203 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P L D+L ++ + S++ + + M Sbjct: 204 DLEYGVEIVIATPGRLIDFLSSNQTNLRRCSYLVLDEADRMLD----------------- 246 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------P 421 + + E QT+ SAT + + D G L Sbjct: 247 MGFEPQIRTIIEQIRPDRQTLMWSATWPDIVARLVKDYLKDYAQINVGSLKLAANHNILQ 306 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 II+V + L +R+ A E + ++ TK+ +D+T ++ G R +H D Sbjct: 307 IIDVCQEYEKESKLSILLREIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDK 366 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER + + +V V D F + I IG Sbjct: 367 SQNERDATLN--------------------YVDDVKFVINFD-----FPTTSEDYIHRIG 401 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 R R N G A + S A+ + + + ++ Sbjct: 402 RTGRCNNTGTAYTFFTPNNASKARDLIDVLKEAKQVI 438 >UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EF0_THICR Length = 401 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 106/386 (27%), Gaps = 39/386 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E E + + F + + + Sbjct: 21 YHKPTPIQAEAIPEMLLSKDVL-AGAATGTGKTAAFVLPALQFLLDDPRPSRKPRV---- 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L F+ + G+ S + P L Sbjct: 76 -LILAPTRELAFQIHKVVKQLGAHCPFE-SNVVTGGFASDKQLEILQSKIDILVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + + + + + D + I + M + L E Sbjct: 134 LNIMSKEFIDLSDIELLIIDEADRMLDMGQ-----------------GPDVLALIEAIPG 176 Query: 386 APQTIYVSAT-PGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 Q SAT G+ + + + + + + + LL Sbjct: 177 DFQAACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLK 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + + +V K A +L ++L+ LH D +R+E + + G+ Sbjct: 237 AILED-ETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKI 295 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+ V+ V D G I IGR R G AI ++ Sbjct: 296 KVLVATDVAARGLDILNVTHVINYDVPYRG-----DIYIHRIGRTGRAQQVGIAINLVER 350 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 + + I ++ K Sbjct: 351 HDITNLQRIEYHLQQSLPVSKIKGLE 376 >UniRef50_A2DFG9 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DFG9_TRIVA Length = 441 Score = 175 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 62/434 (14%), Positives = 130/434 (29%), Gaps = 58/434 (13%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ ++ F + + I + ELA + Sbjct: 36 QIITGHNCIVISQTGTGKTAAFALPIISTLSKDPYGIYALVISPTRELA---------QQ 86 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + ++ ++ R G + + + P + +L Sbjct: 87 ICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPHIVVATPGRILHHL---------- 136 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + D + L E + L+ ++ QT+ SAT + Sbjct: 137 --RSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEKRQTLCFSATKSDQ 194 Query: 400 ELEKSGGDVVDQ-----------------------VVRPTGLLDPIIEVRPVATQVD--- 433 + + PT L P IE V Q + Sbjct: 195 VDLLT--IMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKPKIEHVKVLVQDEGRE 252 Query: 434 -DLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 L+ I++ + ++V+V TK A+ +T L + +HSD+ ER++ + Sbjct: 253 VYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAVMHSDMQESERLKELE 312 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 + R G +LV ++ GLD+P V V ++ + + GR R G+ Sbjct: 313 EFRAGRQRILVATDVAARGLDIPFVDNVIH-----FNPPQNAATYVHRAGRTGRAGREGR 367 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +IL+ + + I + ++ + K + + D K Sbjct: 368 SILFVSGREKKIEQEIEKEIGQQFTELKVEKSEMKEKMNVFWAKKDAKIAMSQSDFGKRD 427 Query: 610 GRGKSRPIVEPDNV 623 K ++ V Sbjct: 428 EMLKQLDKIQAGEV 441 >UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=Embryophyta RepID=RH28_ARATH Length = 789 Score = 175 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 126/404 (31%), Gaps = 39/404 (9%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L Q L Q T + G + P + Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMI 300 Query: 327 DYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + D + + + + + + A + T + Sbjct: 301 DHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVR-----------------LCPK 343 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLLS 437 QT+ SAT E + + P GL + ++ +R + + Sbjct: 344 RRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVL 403 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +V++ + TK+ A L G + LH ++ +R++ + R E Sbjct: 404 LSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEV 463 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D L+ ++ GLD+ V V +E S + +GR AR G A+ + Sbjct: 464 DFLIATDVAARGLDIIGVQTVINYACPRE-----IDSYVHRVGRTARAGREGYAVTFVTD 518 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 S+ K I + + K + E+ + + ++ D Q A A+ ++ Sbjct: 519 SDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMED-----QYSAVISAERDERALR 573 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 E + + + + I+ + + A +D Sbjct: 574 KAEMEFAKAENMLEHRDE-IYARPKRTWFMTEKEKKLVAQAEKD 616 >UniRef50_B7G0R3 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G0R3_PHATR Length = 822 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 60/429 (13%), Positives = 120/429 (27%), Gaps = 78/429 (18%) Query: 199 VIDIFP--AESDDIALRVELFD------EEVERLSLFDPLTGQIVS-TIPRFTIYPKTHY 249 VID+ + ++ E F + + R TG+ ++ +P T Sbjct: 148 VIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRT---GTGKTLAFGLPALTRLVTFTT 204 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIEN 308 + M+ ++ E + ++E+ + G ++ Sbjct: 205 ENGKRDARGVMKSGRKVSMIILCPTRELARQVQEELSQVARPLGLFVEVFHGGVSYDPQS 264 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + P + D++ L + + + + M A +V Sbjct: 265 RALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVV------ 318 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT------GLLDPI 422 Q + SAT ++ E D + + + Sbjct: 319 -------LKNVGSNNPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAET 371 Query: 423 IEVRPVA-----TQVDDLLSEIRQ-----------------------------------R 442 + V +L +I + Sbjct: 372 VRHLAVQLAPGADAKRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQ 431 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 I + +V T TKR A++L + LH D+ +R + R G F+VLV Sbjct: 432 QKIFGKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVA 491 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ G+D+ +V LV D R + + GR R G ++L ++ Sbjct: 492 TDVAARGIDIQDVDLVIQFDPP-----RDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRD 546 Query: 562 AKAIGETER 570 I Sbjct: 547 IVRIERDLG 555 >UniRef50_Q1Q4V2 Similar to ATP-independent RNA helicase DbpA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4V2_9BACT Length = 407 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 95/338 (28%), Gaps = 33/338 (9%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + E +++ +T + G+ + + P L Sbjct: 73 LVIVPTRELCMQYVEEIRKIAAKTD-VIPYAVYGGFDRAAQIARVKQTVHILVATPGRLI 131 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D L L V + + + + Sbjct: 132 DLLYEGILSFARIKCVILDEADELLKVGFLEDIEF-----------------ILSCIRHK 174 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + + + ++ + ++L+ + Sbjct: 175 HQTLLFSATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFSYVNPKQKHEELVKYL 234 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + L+ + M + L L + + Y+H+ + +R IIR R + Sbjct: 235 KGEEVN--QALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRY 292 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ GLD VS V D ++G GRA R G A K Sbjct: 293 LIASDVAGRGLDFSHVSHVINWDMPRDG-----EQYTHRTGRAGRMGRKGIAFTLVAKKD 347 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 S+ + + + N + I Sbjct: 348 LSLLSKVISSRKISPCWIGKNPFNEEARSRQRIPRKKI 385 >UniRef50_C5KW96 Helicase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KW96_9ALVE Length = 393 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 14/245 (5%) Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + D + G + + + L + + + Sbjct: 87 MFSATFPKEIQQLARDFLHDYIFLTVGRVGSTHSSIRQVLRYVEDSDKYRDLRRLLEEQS 146 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 L+ TKR A++L L +H D +ER E +R+ + G +LV + Sbjct: 147 EEGLTLIFVETKRRADELEHVLCRDRYPATSIHGDRSQMEREEALREFKSGVRPILVATD 206 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ V+ V D + + IGR R N G A + ++ ++ + Sbjct: 207 VAARGLDISHVNHVINYDLPH-----NIDDYVHRIGRTGRVGNLGTATSFVNESGRAILR 261 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E+ + + +N A G+ K ++G V + Sbjct: 262 DLWALLEENEQ--EVPSWFLSLMRDVNSARETRFASGKGRYKGSSRGASFGSRDVRQYSS 319 Query: 624 PMDMS 628 +D Sbjct: 320 GVDFR 324 >UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=Magnoliophyta RepID=RH57_ARATH Length = 541 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 111/353 (31%), Gaps = 36/353 (10%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I T + + + +L + L + L +T Sbjct: 168 QRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTA 227 Query: 292 FDLEMMNELGYCSGIENYSR--------FLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + + + + L P L + A + + ++ Sbjct: 228 REGKKLIKGSNFHIRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLV 287 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + ++ ++ V + + SAT + E Sbjct: 288 LDESDKLFEQSLLKQIDCV----------------VKACSNPSIIRSLFSATLPDSVEEL 331 Query: 404 SGGDVVDQVVRPTGLLDPIIEVR----PVATQVDDLLSEIRQRAAI--NERVLVTTLTKR 457 + + D V G + E A + L +RQ A N VL+ +K Sbjct: 332 ARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKE 391 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A++L + L+ R +HSD+ ER + R GE VL+ +++ G+D ++ Sbjct: 392 RAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINC 451 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 V D F S + I IGR+ R G+AI + + + I T Sbjct: 452 VINYD-----FPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTM 499 >UniRef50_Q86IZ9 Probable ATP-dependent RNA helicase ddx52 n=3 Tax=Eukaryota RepID=DDX52_DICDI Length = 668 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 110/358 (30%), Gaps = 28/358 (7%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ RL + + + + N + + P L + + L + Sbjct: 281 AQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSL 340 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 ++ + ++ + + +V + + SAT Sbjct: 341 NKVEYLVFDEADKLFDKNFQEQVDIV----------------VTACQNPKLKICLFSATM 384 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAIN--ERVL 450 E + + + G + + + + + L +RQ +L Sbjct: 385 NQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVRQLIQKGLEPPIL 444 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T +K A DL + L G V +HS+ +R I++ R+G+ VL+ L+ G+ Sbjct: 445 IFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGM 504 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D V+ V D F + S I IGR R G A M I Sbjct: 505 DFKGVNFVINFD-----FPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAM 559 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 ++ + ++ ++ + R S+ + + ++ Sbjct: 560 KQSGSHVPDWMLNLKVQGKKKQQYRLKGVERESFSTIPLSERTSSKFKLRKNKKSFNL 617 >UniRef50_B6AGA4 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AGA4_9CRYT Length = 939 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 98/351 (27%), Gaps = 16/351 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + I V + R + L+ + L Sbjct: 31 IQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQRLGCKHSTIVGIRGLILSPTRELVL 90 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 + + + + + G F+ L + +V+ I Sbjct: 91 QTYRVVRKFAIKTD--IRICTLTGGSSLDRQFENLSGNPDIVIATPGRLCHHIVEAKLSL 148 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E + L + + + Q I VSAT + S +V+ Sbjct: 149 SAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCILVSATMPTGLVSFSRAKLVEPEF 208 Query: 414 RP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + L I ++ LL +R NERV+V TK E L + L Sbjct: 209 IRLDSDHLISDTLKLIFIFTREDDKLATLLYLLRVTIPHNERVMVFCATKHHVEYLAKIL 268 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E + ++ ++D R + R + V++ ++ GLD+P + V D Sbjct: 269 TECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVTDIAARGLDIPLLENVINFDYPL- 327 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 S + + GR R GKA + R Sbjct: 328 ----SAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYTVDLMLFLGLRVSTL 374 >UniRef50_Q95XM9 Putative uncharacterized protein n=2 Tax=Caenorhabditis RepID=Q95XM9_CAEEL Length = 763 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 68/445 (15%), Positives = 133/445 (29%), Gaps = 37/445 (8%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + R L L ++ + R + G + Sbjct: 206 ILERMIYRPKGASCTRVLVLVPTRELA-IQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEA 264 Query: 310 SRFLSGRGPGEPPPTLFDYLPA-------DGLLVVDESHVTIPQIGGMYRGD-RARKETL 361 + P L D+L + + ++ + + L Sbjct: 265 ALRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVL 324 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT----- 416 E L A ++ + A QT+ SAT E + + V Sbjct: 325 DEADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTD 384 Query: 417 ---GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L I +R + + +V TK+ + + L G +V Sbjct: 385 TALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKV 444 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + S + +R+E + + E DVLV +L GLD+ V V ++ +S + Sbjct: 445 GQMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMP-----KSIK 499 Query: 534 SLIQTIGRAARNVN-GKAILYGDKITPSMAKAI-----GETERRREKQQKYNEEHGITPQ 587 I +GR AR G++I + + K I T ++R + E + Sbjct: 500 QYIHRVGRTARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRID 559 Query: 588 GLNKKVV--DILALGQNIAKTKAKGRGKSRPIVE-------PDNVPMDMSPKALQQKIHE 638 L + + D + + K++ +E P + M ++ +K + Sbjct: 560 ELEETIQQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQIEKQRK 619 Query: 639 LEGLMMQHAQNLEFEEAAQIRDQLH 663 E + EAA+ + + Sbjct: 620 REEKRQMKVDARKKAEAAKTPEDIQ 644 >UniRef50_C6LWE2 ATP-dependent RNA helicase-like protein n=2 Tax=Giardia intestinalis RepID=C6LWE2_GIALA Length = 657 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 52/453 (11%), Positives = 111/453 (24%), Gaps = 94/453 (20%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I T + ++ E+ R + + + T Sbjct: 172 SQTGSGKTCAFIIPILHRIATEKLKLYTMSPGHHEDREFRFNP--KGGRAYPFCIIMSPT 229 Query: 291 QFDLEM-----------------MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + ++ + G SG + + + P L D++ Sbjct: 230 RELVQQTAKASWMLSYGTSILTRVAYGGDPSGPQRDALQMGCDILVATPGRLLDFIKQGV 289 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVE------------------------------ 363 + V + M + + Sbjct: 290 VETTYVRFVVFDECDRMLDMGFEPQIRDILHELPPIHHSIQDPSNPDITHQIERQTLLFS 349 Query: 364 -----YGFRLPSALDNR-------PLKFEEFEALAPQTIYVSATPGNYELEKSGGDV--- 408 L + + Q + + + + Sbjct: 350 ATFPKEIKNLAMEFLRQDRLVSITVGQIGSSNPNLAQRVVLVERSNDKLRLLTEYITGQN 409 Query: 409 ----------------VDQVVRPTGLLDPIIEVRP------VATQVDDLLSEIRQRAAIN 446 D + + I E + + I Sbjct: 410 ADLNNMLTDVYGADKEQDPSLSTVSSVAGISEEFNEAMNATYPDSHAARHETLNKDGIIQ 469 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +V T K A+ + Y ++ RV +H D+ ER ++ + G ++L+G ++ Sbjct: 470 YQTIVFTNFKSEADRIFRYFDDMRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVA 529 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 + GLD+P V LV D + IGR R G A+ + A+ Sbjct: 530 QRGLDIPNVRLVLNYDLP-----GNVDDYTHRIGRTGRAGRPGLAVTFVCP-DRDNVSAL 583 Query: 566 GETERRRE-KQQKYNEEHGITPQGLNKKVVDIL 597 + R+ +Q + T + + Sbjct: 584 KDIRRKMMDTKQPIPDWFNRTIDEMLSDKRNAK 616 >UniRef50_C4QLH4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QLH4_SCHMA Length = 454 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 103/331 (31%), Gaps = 16/331 (4%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A L + + T+ + L G + + + G + Sbjct: 57 AFAIPILQDLLSKPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQV 116 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 D ++V + + R + R L E L + + Sbjct: 117 RDLKRLKFHVIVGTPGRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIITKL 176 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLL 436 QT SAT + V+ LD P + L+ Sbjct: 177 HPNKQTFLYSATMTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFIPDKEKDFYLI 236 Query: 437 SEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEH----GERVRYLHSDIDTVERMEIIRD 491 + + ++ R ++ T T R + + L+ L+ + +R + D Sbjct: 237 YLLLSSKSADKSRSIIFTSTWRESFRIVAMLKSLADVISAASAPLNGVMQQDKRQSSLFD 296 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD-KEGFLRSERSLIQTIGRAARNVN-GK 549 R G +LV +L GLD P+V LV D + + S ++ I +GR AR G+ Sbjct: 297 FRTGRVSILVATDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGR 356 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNE 580 AI + + + KAI R Q + Sbjct: 357 AITFVTPYSVTRLKAIESALNERIPQLPWPG 387 >UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EQ41_TRIVA Length = 416 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 19/322 (5%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ ++ + G + R + G + L A +VV Sbjct: 78 LVFAPTRELATQIDHVTRDIGKDIKVR-VCTIIGGVDEDSQVKALKAQPHVVVATPGRLA 136 Query: 345 PQIG---GMYRGDRARKETLVEYGFRL-PSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I + ++ E L + QT SAT Sbjct: 137 RLIRNNPKVIPLNKVECLVFDEADNMLREPSFQTDIQLILSKLNSTHQTYLFSATMPEEI 196 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + D V ++ + V + + L + +++ ++ Sbjct: 197 EQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVALMN-QYPDKQTIIFVG 255 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + A ++ L R H + ER+ I + G++ VLV N+ GLD+P Sbjct: 256 SCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRVLVATNVGSRGLDVPH 315 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT-PSMAKAIGETERRR 572 V LV + I +GRA R G A+ + +++ Sbjct: 316 VDLVINYELP-----EEHEEYIHRVGRAGRAERSGVAVTIITANEVVGYIRLENFLKKKI 370 Query: 573 EKQQKYNEEHGITPQGLNKKVV 594 K+ E+ + + Sbjct: 371 PKKDIPLEKIEEVTEKVELAKR 392 >UniRef50_D2SG81 DEAD/DEAH box helicase domain protein n=2 Tax=Frankineae RepID=D2SG81_9ACTO Length = 508 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 53/335 (15%), Positives = 92/335 (27%), Gaps = 18/335 (5%) Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 LA + + L + ++ + L ++ L+ G Sbjct: 84 PMLARLGETARRGPRAPRALVLVPTRELAQQVFDNLAPL--GQSIGVQLTTVYGGASMYR 141 Query: 325 LFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L V+ I G D + E F + + Sbjct: 142 QIQQLRRGVDAVIATPGRLQDLISQGEVTLDEVSVTVIDEADFMSDLGFLPVVQELLDQT 201 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIR 440 Q + SAT + D P E + D + Sbjct: 202 RPDAQRLLFSATLDGEVDTLVRRYLKDPARHEVKRAGDDAPPAEHLAYSLAFRDKVPVTE 261 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q AA R L+ T+ A+ L L+ G + +H + R + + VL Sbjct: 262 QLAARPGRTLIFVRTQLGADRLAGNLQAAGIKAEAIHGGLPQGARRRALEEFTDARSPVL 321 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+ + +VSLV D ++ + GR AR G + Sbjct: 322 VATDVAARGIHVDDVSLVLHYDPP-----ADHKTYLHRSGRTARAGAGGVVVSLLLPDQV 376 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 AK RR + + E + P + Sbjct: 377 GQAK------RRFRQAKIEPEVSRVRPGDAPIAEL 405 >UniRef50_A4S294 Predicted protein n=4 Tax=Viridiplantae RepID=A4S294_OSTLU Length = 723 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 52/451 (11%), Positives = 122/451 (27%), Gaps = 62/451 (13%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR------- 285 + P + + + + A +L + E Sbjct: 134 RSGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAYILPMLRHINAQEPLASGDGPIG 193 Query: 286 -LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + + + G +S G L +V I Sbjct: 194 MIMGPTRELVTQIGKDCKRYGKAMGFSAVSV-YGGSGIAAQIGDLKRGAEIVACTPGRMI 252 Query: 345 PQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + G + R L E + + + QT+ SAT + Sbjct: 253 DLLTTGSGKITNLRRVTYMVLDEADRMFDMGFEPQITRILANLRPDRQTVMFSATFPHTM 312 Query: 401 LEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + + G ++ ++E+RP + +L + + ++++ Sbjct: 313 EALARAALDNPIEIQIGGKSVVNSDIEQLVELRPEEDRFLRVLELLGEWYERG-KIIIFV 371 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++ A+ I D + ++LV ++ GLD+ Sbjct: 372 ASQDKAD-------------------------STTISDFKSDVCNILVATSVAARGLDVK 406 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRR 572 ++ LV D + +GR R G A+ + + A + + + Sbjct: 407 DLRLVINYDTPNH-----LEDYVHRVGRTGRAGQKGTAVTFISEDEEKFAPDLVKALKES 461 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 ++ + + + D + A G G + + D+ K Sbjct: 462 KQNVPQD----------VQAMADEFTRKRKEGLVGAAGSGFGGSGFKFNQEEQDLLRKQK 511 Query: 633 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + + + + E AA L Sbjct: 512 RDAARAAGLDVDDGESDSDEEPAAHTPGALV 542 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 85/666 (12%), Positives = 203/666 (30%), Gaps = 93/666 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 ++ + I L + +E ++G + K+ I ++ + ++++PN+ Sbjct: 4 NSLISYISNSQIITELVKRIEKNKE-LNIIGSSRYAKSIIINSLAKKENKNIILVSPNEE 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +A + YG + Y P S + ++ E +LS Sbjct: 63 IAYKWYGYFNSIG--------------NRNILYYPPSKNLPYGSINKSKETEYSQLSVIS 108 Query: 129 AMLER---RDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++ +++ + ++ L +++ + ++ L G+ I+ + + +L L Y + Sbjct: 109 KLINNDKEEKNIIITTERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKE 168 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + Q G++ RGE+IDI+P ++ + +R+E FD ++++ +DP+T + + +I + I Sbjct: 169 NLTSQEGSWSRRGEIIDIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIV 227 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + RE++ +E NN + + + +NE Sbjct: 228 QVGYNSLIREKLELLSDEGVFNSEEITTK---NNLDRYLGIIEEYPSNLINYINEDSIIV 284 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 E FD+ +I R + + Sbjct: 285 IDEIDDCTKFANNWYIESVNNFDHFK--------------DEITQNLRSNNINIKVKPNL 330 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + L ++ + + Sbjct: 331 HEKFEYILKTFSDFIVINLYEFESK-----------RNLDNRFLLSDKRINSSSKN---- 375 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L EI + ++V + + L L EH YL Sbjct: 376 -------IGKLSKEINKFILNKDKVWILSAQPLRTRSL---LFEHDCNTNYL-------- 417 Query: 485 RMEIIRDLRLGEFDVLVGINLL--------REGLDMPEVSLVAILDADKEGFLRSERS-L 535 E DL + + ++ EG +P ++ I D + + Sbjct: 418 --EKPNDLDNAYKLIDIPTPVIIKNKNNYEIEGFYLPIWKIILITDKELFSQQALFNNVF 475 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 I+ R I + + ++ + I G ++ + Sbjct: 476 IRRRKR----------SVNSNINVNKINPGDYIVHKNHGIGQFLKLEKINITGESRDYLV 525 Query: 596 ILALGQNI--AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 I L I A + + R + + + + ++ + A ++ Sbjct: 526 IKYLDGKISVAADQLGSINRYRSTGKIMPKINKLGGAEWLKIKDKNRKIIKKVAYDILKL 585 Query: 654 EAAQIR 659 A + + Sbjct: 586 YAKREK 591 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 58/441 (13%), Positives = 125/441 (28%), Gaps = 42/441 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 I + P V + ++ A Q + Sbjct: 627 KIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHWRTFNNR 686 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + N ++ L + + +V +H + + + Sbjct: 687 FSPYPIKVSLLNR------FKTSSEKKDIYAGLKNNKIDLVVATHQILGKEIEIKNLGLL 740 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + R + + + +SATP L S + + T Sbjct: 741 VIDEE--------QRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNT 792 Query: 417 GLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAE----DLTEYLEEHGE 471 ++ +D + + I Q ++ + LT + Sbjct: 793 PPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVNKLTNMFNDLKF 852 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 V H ++ ++ + GE D+++ ++ GLD+P+V+ + I D+ K G + Sbjct: 853 IVA--HGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQ- 909 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L Q GR R+ I E ++R K K E G G Sbjct: 910 ---LYQLRGRVGRSGIQAHAWLFYPN----LNNINEASKQRLKAIKDFSELG---SGYQL 959 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + D+ G + + + + + D+ + L + I E+ G + ++ + Sbjct: 960 AMKDMEIRGVGSLLGEEQSG-------KVNAIGYDLYIEMLHEAISEINGQEIPEVKDTQ 1012 Query: 652 F---EEAAQIRDQLHQLRELF 669 A + E Sbjct: 1013 VDLPINAFIPATWILNREEKL 1033 >UniRef50_C4M8U4 DEAD/DEAH box helicase, putative n=2 Tax=Entamoeba RepID=C4M8U4_ENTHI Length = 542 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 119/397 (29%), Gaps = 40/397 (10%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V +I + L +++ ++ ++ G E Sbjct: 138 PIVEILNKIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLII-GGSSKKKE 196 Query: 308 NYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + P L D++ + + + I + + Sbjct: 197 EEALKKGASIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFE---------- 246 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------- 418 + QT+ SAT + + + VV Sbjct: 247 -------EEMRQILNRLPKNRQTMLFSATQSEKVDDIANISLKQPVVINVESQSTISTSS 299 Query: 419 -LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 L+ + + L + +R+ N++ +V + + + ++ L V+ LH Sbjct: 300 KLEQGYVLIEAKDRFRLLYTFLRK--NKNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALH 357 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 +D +R ++ + + +L+ ++ GLD+P V + +D S + I Sbjct: 358 GQLDQDKRTKVFFEFCKAKEAILITTDIAARGLDIPAVDWIIQVDLP-----DSPKDYIH 412 Query: 538 TIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 +GR AR G+A+L+ + + + + E+ Q + E + +++ + Sbjct: 413 RVGRTARADTKGRALLFVQPCEIRILEYL-KGEKIPLTQYEVPE---KKIANIQRELEKL 468 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + G ++ + L Sbjct: 469 VEKNYYLNTEAKDGYKAYIMAYNSRSLKDVFNVNDLD 505 >UniRef50_B3L6I2 ATP-dependent RNA helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6I2_PLAKH Length = 1354 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 104/315 (33%), Gaps = 20/315 (6%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L NN LT + ++ +E + + + G T + L Sbjct: 684 HQAPLRNNDGPIAIILTPTRELSKQVKSEARPYC--QAVNLRILAVYGGSNIGTQLNTLK 741 Query: 331 ADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++V I + + +R L E L +++ Sbjct: 742 RGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKD 801 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT +SAT +Y + + + G + +EV V ++ LL + Sbjct: 802 KQTAMISATFPSYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLQVKEKIFRLLKLL 861 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +L+ + A+ L L ++ + LH D +R ++ + G+ + Sbjct: 862 GDWSTYG-LILIFVNKQLEADLLYLELFKYDYKTLVLHGGQDQADREFTLQTFKEGKNKI 920 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +++ G+D+ ++ +V + I +GR R+ G A + Sbjct: 921 LIATSVMARGIDIKDIIVVINYECP-----DHIEDYIHRVGRTGRSNKIGYAYTFVSPDE 975 Query: 559 PSMAKAIGETERRRE 573 + A I + Sbjct: 976 HAKAYDIYSLIKNNI 990 >UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q5R2_SCHMA Length = 463 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 106/367 (28%), Gaps = 30/367 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ F+I + + +I + ELA + ++ + Sbjct: 58 QIILGRDLIAQAQSGTGKTATFSIGTLQNILPEICQIQVLVLAPTRELAVQIHHVMSSLS 117 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 R + P + + L + + Sbjct: 118 DYLSIRCVA--------CCGGRNNTMQMARELDKGVHVVVGTPGRVLELLRQGNIRLNKL 169 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + + + L+N +++ Q + +SAT Sbjct: 170 RSLVLDEADEMLNRGLHDQLEEIYRRLPSHTNLNN-------KKSVNCQIVIISATMLKE 222 Query: 400 ELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 LE + V L + L+++ + + +V Sbjct: 223 HLELFQNLTSNPVCVLVPRDELSLSDLQQFYIDVGSEEWKFEALNDLFSSVCV-SQTVVF 281 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+R E L L+ G V H D+D +R +++ R GE +L+ ++ G+D+ Sbjct: 282 VNTRRKVEWLASQLKREGFTVAAAHGDLDQSQRESVMKQFRSGECRILISSDMWARGIDV 341 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG-DKITPSMAKAIGETER 570 V LV D + + IGR+ R G A+ + + I + Sbjct: 342 QTVGLVVNFDLPM-----NTSEYLHRIGRSGRFGRTGLAVSFIANAEERKQLLEICNYYQ 396 Query: 571 RREKQQK 577 Sbjct: 397 IAIPPAP 403 >UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DUF1_STRAG Length = 451 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/469 (17%), Positives = 162/469 (34%), Gaps = 58/469 (12%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 Q + +R GL Q ++G +G+ K IA+ L + MV+ +T + Sbjct: 3 IIELFSQNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDS 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ E+ V F + D + + RLSA + + Sbjct: 62 DKLSSDISSLIGEDNVYQFF-------------ADDVPAAEFIFSSLDKSISRLSALRFL 108 Query: 131 LERRD-VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + V++ S+S + L P+++ K +G + + L L Y + Q F Sbjct: 109 KDPEKNGVLITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVF 168 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F RG+++DIF + + R+E F +E++ + FD T + + + I P Sbjct: 169 SPGEFSQRGDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADD 227 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + +A ++++ L +V L S I Sbjct: 228 IILQDADFERAKKKLEGYLVTASEVQR------------TYLSEVLSTTENHFKHSDIRR 275 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + G + DY+P L VD+ + + + A T + Sbjct: 276 FLSIFYEKEWG-----ILDYIPEGTPLFVDDFQKIVDRN-AKLDLEIASLLTEDLQQGKS 329 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPG------NYELEKSGGDVVDQVVRPTGLLDPI 422 S+L+ +++ P T + + G + + + + Sbjct: 330 HSSLNYFSDPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYGMQE------------ 377 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 Q L+ EI + VL+ +++ L E L+E+G Sbjct: 378 -----FFNQFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGL 421 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 98/652 (15%), Positives = 190/652 (29%), Gaps = 107/652 (16%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 + +A + L + F PE V F P+ D AS Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTF-------------PAWDCLPYDRASPA 92 Query: 117 EHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAIL 173 RL+ A+ R V+V +V+A+ P +++ L G +D+ + Sbjct: 93 LRATSERLATLHALQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLA 152 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y R D ++G + VRG ++D+FPA + ALR++ F +E+E + FD + Sbjct: 153 AMLQANGYIRTDTVTEQGEYAVRGSLVDLFPAG-EPHALRLDFFGDEIESVRQFDATDQR 211 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + FT+ P + + E I + +E + Sbjct: 212 TIGPVDGFTLLPASEALLDEETIKRFRGRYRERFG-----------------ASATGDPI 254 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYR 352 + +++ +G++++ R TLFD+L + L++ + + + Sbjct: 255 YQAVSDGRRLAGMDHWLPLFEERL-----ETLFDHLAPEDLILREAGSIKAAEARFEAIA 309 Query: 353 GDRARKETLVEYG----FRLPSALDNRPLKFEEFEALAPQTIYVSATPGN---YELEKSG 405 A + L V+ L+ Sbjct: 310 DYHANRVRARTTDPGSYRPLEPGELYLAADEWRTAIADRPIHLVTPFAEPESARVLDLGV 369 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 D T ++ D ++ + +RV++ + + E Sbjct: 370 DGARDFAPERTQGVNIY----------DAVIEHVEALGKAGKRVVLASYSTGSRERFAGL 419 Query: 466 LEEHGER--------------VRYLHS-----DIDTVERMEIIRDLRLGEFD-------- 498 L EHG L + E Sbjct: 420 LAEHGLDRGDLVDDWQSAITLPLPLAGGGRGVGLPRKENDGAQAGGPPPPPPASGRGGNM 479 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL--YGDK 556 V + + L G ++ + + D G + R R + A L Sbjct: 480 VALAVLPLDHGFTSGDI--ALLTEQDMLGDR--------LVRRQKRKKSADAFLAELATL 529 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG-RGKSR 615 + + R E I V + G + + SR Sbjct: 530 SPGDLVVHMDHGIGRYEG------LTSIPVAKAPHDCVALTYAGGDKLYVPVENIDVLSR 583 Query: 616 PIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNLEF---EEAAQIRDQLH 663 E + V +D + A Q + ++ + + A L E A + + + Sbjct: 584 YGAENEGVQLDKLGGVAWQARKARMKERIREIAGELIKTAAERALRPAEAIE 635 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 63/441 (14%), Positives = 127/441 (28%), Gaps = 43/441 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P V + ++ A + Q + +E Sbjct: 665 DLAAGKPMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICPTTLLARQHYRNFVER-- 722 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+ LS D L + +V +H + + R Sbjct: 723 ----FHGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAKGIAFKRLGLVIV 778 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + ++ATP L+ + + + V T Sbjct: 779 DEEQRFGVTHKER--------LKALKTDVHMLTLTATPIPRTLQMAMSGLRELSVIQTPP 830 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL- 476 +D + VA ++ + + + + T + D+ +YL + V Y+ Sbjct: 831 VDRLAVRTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLPDIEDYLRKEVPEVSYVV 890 Query: 477 -HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E E + +FD+LV ++ GLD+P + + + AD+ G + L Sbjct: 891 AHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNRADRFGLAQ----L 946 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ Y T + + ET +R + + G G D Sbjct: 947 YQLRGRVGRSKTR---AYAYLTTGD--RGLTETAEKRLHILQNIDTLG---AGFQIASHD 998 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE-- 653 + G + V ++ L++ I + + + + F Sbjct: 999 LDIRGAGNLLGDEQSG-------HIKEVGFELYQSMLEEAILDAKAGGLADTKRESFSPQ 1051 Query: 654 -----EAAQIRDQLHQLRELF 669 D + L Sbjct: 1052 INVDAPILIPEDYVPDLDLRM 1072 >UniRef50_Q39189 DEAD-box ATP-dependent RNA helicase 7 n=18 Tax=Embryophyta RepID=RH7_ARATH Length = 671 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 51/312 (16%), Positives = 94/312 (30%), Gaps = 35/312 (11%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 G ++ P + D++ L + + M R Sbjct: 206 CCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGF 265 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVR 414 L+ ++ QT+ SAT ++ S + DQ Sbjct: 266 VEDVELILGKV---------------EDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTI 310 Query: 415 P-TGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G I + + L+ +I + + ++ TK +L+ L Sbjct: 311 DLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLL 370 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R LH +I +R + R G+F LV N+ GLD+ +V L+ + +E Sbjct: 371 D----GSRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPRE 426 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + I GR R G A+ D S I + + + + I Sbjct: 427 -----VEAYIHRSGRTGRAGNTGVAVTLYDSR-KSSVSRIEKEAGIKFEHLAAPQPDEIA 480 Query: 586 PQGLNKKVVDIL 597 G + + Sbjct: 481 RSGGMEAAEKVK 492 >UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly similar to Probable ATP-dependent RNA helicase DDX52 (EC 3.6.1.-) n=5 Tax=Chordata RepID=B3KM65_HUMAN Length = 413 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 106/332 (31%), Gaps = 29/332 (8%) Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + ++ Q + L L + E ++++ T F + M+++ + Sbjct: 35 IPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGP 94 Query: 310 SRFLSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 P L L D + + + + + ++ Sbjct: 95 KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG------------- 141 Query: 368 LPSALDNRPLKF-EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 + ++ + + SAT + ++ + + G + +E Sbjct: 142 -KTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETV 200 Query: 427 P----VATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 L +R+ VLV + A++L L G V +H++ Sbjct: 201 EQELLFVGSETGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAER 260 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R + R G+ VL+ LL G+D V+LV D F S I IG Sbjct: 261 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYD-----FPTSSVEYIHRIG 315 Query: 541 RAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 R R GKAI + + + +++ ++ Sbjct: 316 RTGRAGNKGKAITFFTEDDKPLLRSVANVIQQ 347 >UniRef50_UPI000186E757 ATP-dependent RNA helicase DDX54, putative n=3 Tax=Neoptera RepID=UPI000186E757 Length = 723 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 58/450 (12%), Positives = 129/450 (28%), Gaps = 31/450 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ------- 284 + IP + +V + A + E + Sbjct: 43 QKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPKSRLGVRA 102 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + G + L+ G+ F + + ++V + Sbjct: 103 LILSPTRELALQTVKFIKELGKFTKLKALAI-LGGDSMDQQFGAIHENPDIIVATPGRFL 161 Query: 345 PQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 M + E + + + ++ QT+ SAT ++ Sbjct: 162 HICVEMELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRLGVSRQTVLFSATLPKLLVDF 221 Query: 404 SGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + +V+ V+ + I E+ + L + N + L+ TK Sbjct: 222 AKAGLVNPVLLRLDVETKIPEMLDLVYFSVKHDEKLAALLCLLNLLPKNTQTLIFVATKH 281 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E + + LE+ Y++SD+D R + VL+ ++ G+D+P++ Sbjct: 282 HVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNKVCSVLIVTDVAARGVDIPQLDY 341 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 V F + + +GR AR G A + ++ Sbjct: 342 VINYH-----FPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYIIDLHLFLGKKINLL 396 Query: 577 KYNEEHG---ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + L K D++ Q+ + + + + + K+ Sbjct: 397 DKTSKLTTSCNAKEALGKIPSDVIESQQSELISWHHNDEEISNLEKVCDNGYKKYLKSRP 456 Query: 634 QKIHELEGLMMQHAQNLEF---EEAAQIRD 660 ++ A+ L+ E RD Sbjct: 457 GA----SIESLKRAKELDLYNVEVHPFFRD 482 >UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHS8_BDEBA Length = 549 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 97/371 (26%), Gaps = 53/371 (14%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I + R + EE K + R + K + T+ Sbjct: 46 QTGTGKTAAFVIPVMERILRARPIQGEVTEEQKALIEKRAYK---DWKPQNFVLILVPTR 102 Query: 292 FDLEMMN-----------------ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E + G + + P L D + Sbjct: 103 ELAEQVQDNINKLSVDSGLRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLV 162 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + M+ + + Q + SA Sbjct: 163 DLKQVRAIVFDEADRMFDMG-----------------FKDDMKYILQRVPRERQLLVFSA 205 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINE 447 T L + V I + LLS ++ + Sbjct: 206 TLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQIFHVGSDEKPQHLLSLLK--VHNPK 263 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR-LGEFDVLVGINLL 506 + ++ T K E + ++L E+G + S + +R +I + + +VLV ++ Sbjct: 264 QAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQAQRNRVIEQFKAENDMNVLVATDVA 323 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ V +V + S + IGR R G+A I Sbjct: 324 ARGLDIKGVDMVVNYELPM-----DSESYVHRIGRTGRAGTTGQAFSLVGDKDIESLGRI 378 Query: 566 GETERRREKQQ 576 + + + + Sbjct: 379 EDYLKHKIEIG 389 >UniRef50_C5YS52 Putative uncharacterized protein Sb08g003560 n=1 Tax=Sorghum bicolor RepID=C5YS52_SORBI Length = 531 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 44/369 (11%), Positives = 104/369 (28%), Gaps = 48/369 (13%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 P ++ + + + + LLE+ + L+ Sbjct: 134 PRMQLVIDVGSSLNLDLTCEGMDLIALAQTGSGKTAAFALPILQALLEHRRPFFACVLSP 193 Query: 289 RTQFDLEMMNE----------------LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + +++ + G + S P L D+L Sbjct: 194 TRELAIQIAEQFEALGSAIGLVCSVLVGGVDRMQQVISLARHPHIIVATPGRLLDHLTDT 253 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + ++ + L E L + + +T Sbjct: 254 ----------------KGFSLNKIKYLVLDEADVLLDMEFEKSLNDILKVIPKERRTFLF 297 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 SAT + L + P + L+ + + +++ Sbjct: 298 SATMTDKLKVSCKYS-------TVDTLREEFYLVPANDKDCCLVYVLNKI--PGSMIMIF 348 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T T + L L G +++ + +R+ + + +++ ++ GLD+ Sbjct: 349 TETCYSSRLLALMLRNLGFEAIFINGKMSQDKRLGALNRFKSKGCNIITCTDVASRGLDI 408 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 V +V D S +S + +GR AR +G A+ ++ K I + + Sbjct: 409 QGVDVVINYDIP------SLKSYVHRVGRTARAGQSGYALSLVNQYEVLRFKYIEKLLGK 462 Query: 572 REKQQKYNE 580 + + +E Sbjct: 463 EISKSEVDE 471 >UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Alphaproteobacteria RepID=A5VCX7_SPHWW Length = 593 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 55/458 (12%), Positives = 120/458 (26%), Gaps = 41/458 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ E + + + E + +A E + Sbjct: 19 YTAPTPVQAQVIAAEA-HDRDLLVSAQTGSGKTVAYGLAIAETLLQGAEALPRAGEPLAL 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +A R++ L+ + L+ + + G +E P L Sbjct: 78 IIAPTRELALQVQRELQWLYAKLGAR---VVSCVGGMNVRVEQRQLSYGCHIVVGTPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L L V + + M + + Sbjct: 135 KDHLERGALQPGSLRAVILDEADEMLDLG-----------------FREDLEEILDLTPP 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP------IIEVRPVATQVDDLLSEI 439 +T+ SAT + D + T + + + + + Sbjct: 178 ERRTLLFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNV 237 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +V T+ L+ L E G L ++ ER ++ LR V Sbjct: 238 LRFHEAKG-AMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARV 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 V ++ G+D+P + LV + +L GR R + Sbjct: 297 CVATDVAARGIDLPGLELVIHAELPI-----DPETLQHRSGRTGRAGRKGTCVLITPYQR 351 Query: 560 SM-AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI-LALGQNIAKTKAKGRGKSRPI 617 A+ + K I + + + + + + A+ ++R Sbjct: 352 RRHAERLLRGANVNATWDKVPTPDEIYARDQERLLESLSVGEISDEDLDVARKLLETRSA 411 Query: 618 VEPDNVPMDM------SPKALQQKIHELEGLMMQHAQN 649 E + +P+ L G Q + Sbjct: 412 EEIAAAFVRTQRQSLPAPEDLIDASPIARGDREQATRE 449 >UniRef50_Q9AW05 DEAD box protein n=1 Tax=Guillardia theta RepID=Q9AW05_GUITH Length = 386 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 95/358 (26%), Gaps = 40/358 (11%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + + + + + + EL + E + R+ Sbjct: 44 VYSQTGSGKTLAYILPLLQKLLYKKNNYLPIIIVPSRELVFQISTTFETISCVFNIRIAS 103 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T G ++ + P L + L + Sbjct: 104 LT---------GGIDPNVQLVMISSNPDIIISTPGRLVEILK----------------LT 138 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 L E + S + + SAT + + Sbjct: 139 KNLEIKFCTDLVLDEADKLIHSDFKREINIINSKTNKNKKLMLFSATMSLGLEKIKFFKI 198 Query: 409 VDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + V L P + LL I + +++ T++M E Sbjct: 199 SNPVRIIINQNFFISPNLIQNYIFCPFRYKEIYLLYLINEFYEE--KLICFVETQKMTEK 256 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 ++ L++ +H + ER++ + G+ +LV +L GLD+ VSL+ Sbjct: 257 ISILLKKFSFDCYIIHGSLSQNERIDTLSKFTNGKKKILVATDLASRGLDICAVSLIINY 316 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + I GR R G+AI + + I + + Sbjct: 317 DFPIY-----LKDYIHRTGRTGRAGRAGRAISLITQYDLRTFQKIESILNIKIAELNI 369 >UniRef50_Q9FNM7 DEAD-box ATP-dependent RNA helicase 26 n=12 Tax=Embryophyta RepID=RH26_ARATH Length = 850 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 49/406 (12%), Positives = 111/406 (27%), Gaps = 42/406 (10%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ-RLTQRTQ 291 F + + + + L L + E L Sbjct: 428 TGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPS 487 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG---LLVVDESHVTIPQIG 348 ++++ + + + P L D++ ++ + + + Sbjct: 488 IGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEAD 547 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + QT SAT + + Sbjct: 548 HLLDMG-----------------FRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVAL 590 Query: 409 -VDQVVRP-----TGLLDPIIEVRPVATQVDD---LLSEIRQRA---AINERVLVTTLTK 456 D +G + + +D LL + + ++ +V++ T Sbjct: 591 KRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTA 650 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + + L + VR +HS R + + R + +LV ++ G+D P+VS Sbjct: 651 MVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVS 710 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQ 575 LV G I +GR R G+ +L ++ + + Sbjct: 711 LVVQ-----MGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVKDL---PITK 762 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + K + + + A G KS+ ++ D Sbjct: 763 SPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIARD 808 >UniRef50_A8MAW4 DEAD/DEAH box helicase domain protein n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MAW4_CALMQ Length = 359 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 93/309 (30%), Gaps = 28/309 (9%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + T+F+ ++ SG R P L Sbjct: 68 ALVISPTRELALQIMNQFLIFNKYTKFNSAVVYGGVGYSGQVKALRD--ASLIVATPGRL 125 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + ++ I ++ M Sbjct: 126 LDLTGKSIVDLSNVKYLIIDEVDRMLDMGFI-----------------KDVYTISSLTGN 168 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQR 442 QT +AT + + + + + + P+++ Sbjct: 169 RKQTHAATATLPSEVHDVVKRVLRNPLFIRVSNHEYELPMVDQLVYLVDGSWRSKYGLTG 228 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + + ++ T+ A L L G RV LH + R +R R + L+ Sbjct: 229 KVLEGKSIIFVNTRERAYRLYRQLRNDGLRVLLLHGGMRQETRESTLRRFRELDSGSLIS 288 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 +L GLD+ +V+L+ DA R + I IGR AR N GKAI + + Sbjct: 289 TDLASRGLDIIDVNLILNFDAP-----RDPETYIHRIGRTARLNRRGKAITLATRDELRI 343 Query: 562 AKAIGETER 570 + + Sbjct: 344 LNEVTKLTG 352 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 82/663 (12%), Positives = 179/663 (26%), Gaps = 118/663 (17%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + + F P Q E + + E ++ H ++ G GS + A + ++ Sbjct: 1 MMQLKTIKETFLPDMLQNEFGKEIFENIDQ-FRHLSVKGSAGSAPSIFAAELFVTRKKTV 59 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 + L +K A EM++ + V Y P++ + Sbjct: 60 LFLIEDKEDALYATAEMEDLLGKENVL-------------YFPATHLAPYQIEKTQNANL 106 Query: 121 QMRLSATKAM-LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAE 178 +R + ++ V++A S++ + + + + VG +D L + Sbjct: 107 VLRTDVLNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFTGELLQQ 166 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 + D + G F VRG ++D+F S++ R+ F E+E + F+ T + Sbjct: 167 FNFQLTDFVSEPGEFSVRGGIVDVFS-YSNEEPYRISFFGNEIESIKTFNIETQLTNGKV 225 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 F + +Y ++ + +L K+ + Sbjct: 226 NEFQLVSNMNYAVSGSKVSLLGLLPNDSFVVSVNAILATRKISD---------------- 269 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + + + Y L+ +PP LF V E + Sbjct: 270 ---FFTKADEYYEALNKDIKHQPPAELF----------VSEEEFLKDIAAFKHIDFTLDT 316 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + L + F + L + D V + Sbjct: 317 LKTSQADTLLIQLNQTQQPGFHKNFEL---------------------LLEDLVEKRNAN 355 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 D I + + + L I + + + ++ + Sbjct: 356 FD--IWISFSTEKQKERLEAIFKEISTPQEMISDSE------------------------ 389 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ ++ + + L EG + + D + + Sbjct: 390 DLPVFQQKAFFKSFKSE----------LHEGFVDADHKISVYTDHQIFDRYQRFK----- 434 Query: 539 IGRAARNVNGKAIL-YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 N A K K+ + G ++ + Sbjct: 435 ------AKNTFAKSEQLTLKDLMQMKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLT 488 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDN---VPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 ++ K PD V + A + + + + Q A +L Sbjct: 489 YKNGDLLYVSIHSLHKISKYNGPDGREIVLSKLGSPAWKTLKQKTKAKVKQIAFDLIRLY 548 Query: 655 AAQ 657 A + Sbjct: 549 AKR 551 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 55/411 (13%), Positives = 115/411 (27%), Gaps = 35/411 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + ++ A + Q + E Sbjct: 589 KTDMEKETVMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQHYRSFKER 648 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + + N R + L + +V +H + Sbjct: 649 LKDFPVNISYMNRFRT------AKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGLL 702 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + T+ ++ATP L+ S D V T Sbjct: 703 IIDEE--------HKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKT 754 Query: 417 GLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + +E V + + I + +V +D+ ++ + Sbjct: 755 PPPNRQPVETSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKDIAGLIQRLVPDAKV 814 Query: 476 L--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + H ++ + + D G++DVLV ++ G+D+P + + I DA + G Sbjct: 815 ITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMA---- 870 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ + ITP + R+R + + + G G + Sbjct: 871 DLHQMRGRVGRSNRK---AFCYLITPP-FDMMTSDARKRLEAIEQFSDLG---SGFQIAM 923 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 D+ G + + + D K +Q+ + EL+ Sbjct: 924 KDLEIRGAGDLLGGEQSGF-------INEMGFDTYQKIMQEALEELQNDEE 967 >UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H4C0_CHAGB Length = 602 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 92/317 (29%), Gaps = 31/317 (9%) Query: 266 ELAARRKVLLENN-KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L E ++ E R + G + P Sbjct: 206 PLVVIICPTRELAVQIFNEARKFCYRTMLRPCVVYGGGALRDQAQQLQKGCDILIASPGR 265 Query: 325 LFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L ++ + L + ++ I + M D + + T + G + Sbjct: 266 LIHFINKPETLTLRRVRYMVIDEADEMLMDDWSEELTTILSG-----GARDLAQTHLAET 320 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 + + ++ + + + + L+ I+ Sbjct: 321 HVRLRVGRAGSSH--------------------ANIKQNVIYVDPSLKKQALIDLIKSL- 359 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 R ++ +KR AE++ ++L G +H D + +ER +R R G++ +L+ Sbjct: 360 -PPTRTIIFVNSKRAAEEVDDFLFNLGMPCTSMHGDRNQLEREAAMRGFRGGKWPILIAT 418 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 + G+D+ V V D + IGR R G A + +A Sbjct: 419 GVTARGIDVRNVMHVINYDLPSMEYGG-IEEYTHRIGRTGRIGHRGLATSFYSDRDEPIA 477 Query: 563 KAIGETERRREKQQKYN 579 + T ++ Sbjct: 478 SVLTRTLMETHQEIPDF 494 >UniRef50_A2DP01 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DP01_TRIVA Length = 402 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 111/350 (31%), Gaps = 16/350 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L LLE ++ + + T+ + + E+ + + G Sbjct: 56 LIPLLHQLLEKDRPEKYGIILAPTRELVIQIAEVAQLMSA-KLNITIVPIYGGVDDVEQM 114 Query: 327 DYLPADGLLVVDESHVTIPQIG--GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V I + R + E + A Sbjct: 115 AQLAKRPHIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCA 174 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSE 438 Q + SAT + + + + + + +Q + L Sbjct: 175 KTHQIMLFSATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTSPKSQKEATLVA 234 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++++ R A LT LE+ V + +R E ++ R + Sbjct: 235 LLHHFET-SQIIIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIR 293 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 +LV ++ G+D+P + +V D G + I GRA R +G AI + Sbjct: 294 ILVATKVVGRGVDIPNIDVVVNYDLPDNG-----KEYIHRAGRAGRALKSGIAITFVTME 348 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + + + +R + ++++E I + + LA+ + ++ Sbjct: 349 SLQKYQDLEKYLKRELPKFEFDKEKKIQEISKDLEEAHELAVEKYKKLSR 398 >UniRef50_C1MQ70 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MQ70_9CHLO Length = 748 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 53/386 (13%), Positives = 109/386 (28%), Gaps = 34/386 (8%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 G+ ++ + + P L A + L + + Sbjct: 176 GKTLAFVLPIVEAINREHPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHI--GHAF 233 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G G + P + D+L L + + M Sbjct: 234 KLTAICVYGGAPYGDQQRLLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEML 293 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-D 410 ++ + QT+ SAT + + S + D Sbjct: 294 NMGFVEDIEMILNH---------------AKDNEKLQTLLFSATLPKWVADISRRFLQPD 338 Query: 411 QVVRP-TGLLDPI----IEV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 V G + + + + + IR + + RV+V TKR + Sbjct: 339 HVTVDLVGDEKQKASAAVTHMLLNCQWSERTELVCDLIRAKVPGDGRVIVFCDTKRDCGE 398 Query: 462 LTEYLE-EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L E L+ E + + LH D++ +R ++ R +F LV ++ GLD+ V LV Sbjct: 399 LQEALQKELEKGAKALHGDVNQAQREVVLAGFRANKFQTLVATDVAARGLDISGVELVVQ 458 Query: 521 LDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + + + I G+ + I + ++ Sbjct: 459 CEPP-----KEPETYIHRSGRTGRGGATGECVTLCTPRNEWAIPNIERKGGFKFQRIAPP 513 Query: 580 EEHGITPQGLNKKVVDILALGQNIAK 605 + + + + A+ + AK Sbjct: 514 QPAEMAAAAAKIVIAQVRAVAKGAAK 539 >UniRef50_Q22MC1 Type III restriction enzyme, res subunit family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22MC1_TETTH Length = 440 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 115/363 (31%), Gaps = 29/363 (7%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + + ++E G + + +S G L +VV T+ Sbjct: 74 IVLTANRELAMQISEQFTIFGS-SLNLRVSTLVGGVDFNKQLSELERIPHIVVGTPGRTL 132 Query: 345 PQIGG----MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN-- 398 I + + L E ++ EF Q I +AT + Sbjct: 133 DMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIILATATINDDF 192 Query: 399 ------YELE---KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 L+ K V+Q + L + P + + ++ + + + Sbjct: 193 NDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVKDQNFINLLNKFK--GISM 250 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ R + L + LHS + +R+ ++ + ++LV ++ G Sbjct: 251 IIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANILVATDVASRG 310 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+P V LV D ++ I +GR AR G AI + + I + Sbjct: 311 LDIPTVDLVINYDIP-----KNSDDYIHRVGRTARKGKRGLAISIMTQYDVQLILNIEKN 365 Query: 569 ERRREKQQKYNEEHGITPQ-GLNKKVVDILAL----GQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ K +EE + +NK + G + K + KS + Sbjct: 366 IGEKLEELKVDEEEALEIAPKVNKAKKFVKIKMSEDGSSENFDKQEQDKKSYKEFIREQK 425 Query: 624 PMD 626 + Sbjct: 426 KLK 428 >UniRef50_A3PFY9 DEAD/DEAH box helicase domain protein n=28 Tax=cellular organisms RepID=A3PFY9_RHOS1 Length = 793 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 90/315 (28%), Gaps = 14/315 (4%) Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + L++ ELG+ G ++ G T L +VV Sbjct: 90 PIALAIAPTRELALQVARELGWLYGEA--GAHIATCVGGMDYRTERRALDRGAHIVVGTP 147 Query: 341 HVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 I R L E L +T+ SAT Sbjct: 148 GRLRDHIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKE 207 Query: 400 ELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE--RVLVTTL 454 + D V T IE R + D I E +V Sbjct: 208 IEALAKEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCK 267 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+ L + G +V L ++ ER ++ LR G V + ++ G+D+P Sbjct: 268 TRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPG 327 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 + LV D + +L+ GR R G ++L A+ + + Sbjct: 328 LELVIHADLPT-----NSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVA 382 Query: 574 KQQKYNEEHGITPQG 588 K + + Sbjct: 383 DWGKPPSADEVQERD 397 >UniRef50_B5DQ82 GA23405 n=4 Tax=Drosophila RepID=B5DQ82_DROPS Length = 597 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/407 (15%), Positives = 120/407 (29%), Gaps = 39/407 (9%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCS 304 + L L E LT+ T + ++E Sbjct: 177 FLTPIINGLRSHKTTGLRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKH 236 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLV 362 G E ++ P + L L + + + + + + + Sbjct: 237 GAECKQKY---DILISTPNRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEGQNNFKEQL 293 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 + + + SAT + + + + V G+ + Sbjct: 294 DD-------------IYAACSHPQKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSA 340 Query: 423 IEVRP----VATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + L +R + VLV +K A+ L E L G V + Sbjct: 341 TDTVQQELLFVGSESGKLVAMRNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVI 400 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H++ +R +R R G VL+ L+ G+D V+LV D F + S I Sbjct: 401 HAERSQHQRDNCVRAFREGNIWVLICTELMGRGIDFKGVNLVINYD-----FPPTTISYI 455 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 IGR R G+AI + + + ++I + E+ + + + K Sbjct: 456 HRIGRTGRAGRPGRAITFFTQDDTANLRSIALIIKNSGGTVP---EYMLQMKKVRKSEAR 512 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 I A + K RP + + +Q+ + L+ Sbjct: 513 IRAKKP---LEREDISTKIRPEASIEATQKSAKLQKIQKAENILKKR 556 >UniRef50_A8IYU1 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IYU1_CHLRE Length = 235 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 68/248 (27%), Gaps = 35/248 (14%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P L D + L++ +V + + M + + Sbjct: 1 VLVATPGRLLDLADSGHLVLGHVRYVVLDEADKMLGLGFKPQLDRL-------------- 46 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-----GLLDPIIEVRPVATQ 431 PQ + SAT + + + + + Sbjct: 47 -------PQRPQVLLFSATMPAEVEAAAAQWLRKPERVAVSAGGANAISRTVTQVGHLGR 99 Query: 432 VD---DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + RVLV + L L G +V LH ER + Sbjct: 100 IRAQYQQQQAAGAGGRNPPRVLVFANRVKAVRFLAAALAREGYKVAQLHGQRSQGERNQA 159 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + + R G+ VLV ++ GLD+ + V D F + + +GR R Sbjct: 160 VSEFRAGKAQVLVATDVAARGLDIRALPYVVNYD-----FPARIETYVHRVGRTGRLAAC 214 Query: 548 GKAILYGD 555 G A + Sbjct: 215 GHAYSFFT 222 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 129/457 (28%), Gaps = 40/457 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD D LT P + + ++ A Sbjct: 545 FDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQV 604 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + +E M E + + + + + Sbjct: 605 AVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQEEREA------LKGIKSGKVDI 658 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H Q + + + + + +SATP Sbjct: 659 VVGTHRLASQDVDFHNLGLVIIDEE--------QRFGVDVKERLKALKATVDVLTLSATP 710 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S V D + D + V +DL+ + + ++ Sbjct: 711 IPRTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNR 770 Query: 456 KRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E + L + R H ++ E +++ D G+FD+L+ ++ GLD+P Sbjct: 771 VNDIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIP 830 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 + + I +A++ G L Q GR R L D K+I RR Sbjct: 831 NANTIFINEAERYGLA----DLHQLRGRVGRYKNRAHCYLLIDSN-----KSITPNAARR 881 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + + E G G + D+ G + V ++ + L Sbjct: 882 LRAIEEFSEMG---AGFQISMRDLEIRGAGNLLGTQQSG-------HIAAVGYELYCQLL 931 Query: 633 QQKIHELEGL--MMQHAQNLEFE-EAAQIRDQLHQLR 666 + + L+ Q A +L EA D + +R Sbjct: 932 ENAVRSLQRQPPKQQLAVDLNLPGEAFLPSDYVDDMR 968 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 91/285 (31%), Gaps = 27/285 (9%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + + T+ GV GS A + + P + + P + A L Sbjct: 22 IAQLAGFAEVVAAMSR-HEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADDLA 80 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F Q +PS ++ I + + RL K +L R Sbjct: 81 IDIALF--------------RSQGILPLPSFESAIVAELGRD-DAFGPRLRTLKELLVAR 125 Query: 135 ---------DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +VV S+ ++ ++ + ++ LR L E Y Sbjct: 126 ENPRAAATLQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGYEAT 185 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 G F RG +ID+F A R+ELFD+EVE + FD T + + + I Sbjct: 186 TSVQLPGEFCHRGGIIDLF-AHDWQRPARIELFDDEVESIRQFDVATQRSLGALDWVEIT 244 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 I + L L + + L + + Sbjct: 245 AIPAANLAGGVIADYLPPNSRILLFSPDRLSDEGRALHARSTAEA 289 Score = 56.0 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 48/174 (27%), Gaps = 24/174 (13%) Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G ++G LREG +P+ L+ I + R + +G+A + Sbjct: 377 GRLSYVIGT--LREGFRVPDEKLIIITGGELFHRGELRRLPRRRLGKA-------IDSFL 427 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 D + + R + + G Sbjct: 428 DLREGDLVVHLAHGIGRFAGI--------KLLERGETSEEHLEIEFDG-------GTRIY 472 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 P V D V + + + ++ G + A + ++ +L+ + Sbjct: 473 VPAVRIDLVQKYVGGTKTRPSLAKIGGKTWLKQKKAAESAVADLAVEMLELQAM 526 >UniRef50_C1E0H4 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E0H4_9CHLO Length = 523 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 97/327 (29%), Gaps = 17/327 (5%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 L+ + L+ S + G+ FD L ++ L+V Sbjct: 144 AVVLSPTRELALQTYKFAQELSKFTDLRC--VCVVGGDSMEAQFDDLASNPDLLVATPGR 201 Query: 343 TIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + L E L ++ + A Q + SAT + Sbjct: 202 LLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLRDIMKQVADQRQCLLFSATMPSAL 261 Query: 401 LEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 E + D V + L V ++ LL +R+ N++ +V T Sbjct: 262 AEFVRVGLKDPQVIRLDAEMKVSPDLKLSFTVMRQDEKIPSLLFFLREVVPENQQTVVFT 321 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 T+ E L LE G V ++ +D R I R + V+V ++ G+D+P Sbjct: 322 ATRHHVELLVTVLESEGITVSAVYGSMDMAARKLHIGKFRNRKTSVMVVTDVAARGIDIP 381 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 + V D F + + +GR AR G A K + R Sbjct: 382 LLDNVVNFD-----FPPRPKLFVHRVGRVARAGRTGVAHSLLVKEEMGFLVDLHLFLGRS 436 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILAL 599 D Sbjct: 437 LVAAPVKPPESRDEARQIADEADEAQR 463 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 90/623 (14%), Positives = 183/623 (29%), Gaps = 84/623 (13%) Query: 41 TGSGKTFT-IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + K+F I + I + ++ +++ N+ A QLY + F P + Sbjct: 7 PQAAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIY------------ 54 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLY-LKM 157 Y PS DT S N +I R + + + +V+ + + P + K Sbjct: 55 -YFPSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKY 113 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L M + + + L E + RN G F VRGE++D+ ES R+ Sbjct: 114 YLKLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESKG--YRINFS 171 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + VE + FD T + I P V E I + Sbjct: 172 WDYVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDNYLRNFGVNH------ 225 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 E + SG E G DYL ++ Sbjct: 226 -----------TDNPLYEAITGGRKFSGYEQLLPLFYDSYSGLT-----DYLNNPVIIFD 269 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + I + Y + N+ + L+P +Y ++ Sbjct: 270 NLTKQAILEFEHSYNDFYKARLDA------------NKLKFNSFYPTLSPSQLYFTSLEA 317 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV---DDLLSEIRQRAAINERVLVTTL 454 LE+ ++ + I + D L I+ A +++++ + Sbjct: 318 IELLEQENNILISYENSEQASIVENIAAASFVEKKTIFDKLFEVIK--ANSRKKIIIGSS 375 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 E + +E + + E + + + ++ + Sbjct: 376 VLSSFERVKSIIENYEYSYNEI----------EYLEEAKTNTINIAI------------- 412 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + L + F+ + L + + N K IL + Sbjct: 413 LPLNQSFSTPEYLFIAASELLEEKVTPTNTNKKLKNILL----ELDHLAEGELIVHKDHG 468 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 ++ + + +G + IL G + + + + + Q+ Sbjct: 469 IGQFLKLEALEIKGKLHDFLKILYAGNDKLYIPVENIEVIKKYGSDVAQLDKLGSVSWQK 528 Query: 635 KIHELEGLMMQHAQNLEFEEAAQ 657 +L+ + + A +L A + Sbjct: 529 NKAKLKNRIKEIALHLMQIAAKR 551 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/318 (15%), Positives = 108/318 (33%), Gaps = 29/318 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + + ++ +H + ++ + +G +F + + Sbjct: 679 LESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVG--------QKEFLKSLKSSTH 730 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINE 447 + +SATP L+ S + + + T L+ + V ++ + Sbjct: 731 VLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRDALLHEHFRGG 790 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + ED+ + L++ + Y H + + EI+ + G+FD+L+ + Sbjct: 791 KSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDILISTTI 850 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+ + + + I AD G + L Q GR R GK Y PS K Sbjct: 851 IESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGR---GKMRGYAYLTLPSHKKMT 903 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + RR + + G D+ G + + + V Sbjct: 904 PHSLRR----LEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSG-------QIREVGT 952 Query: 626 DMSPKALQQKIHELEGLM 643 ++ + L+++I + Sbjct: 953 ELYQEMLEEQIAIFKDEP 970 >UniRef50_Q4N0E9 ATP-dependent RNA helicase, putative n=2 Tax=Theileria RepID=Q4N0E9_THEPA Length = 839 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 107/347 (30%), Gaps = 30/347 (8%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + S I P + +V L R L L + + + Sbjct: 55 RTGSGKTVAYIAPIVQLLDFHSPVVG--VRCLILLPTRELALQVEGVLKKFVNFSNQDDA 112 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G + S + P L +L L + +H+ I + ++ Sbjct: 113 LRVSLLIGGKSVESQFGSLSFNPDIVIATPGRLVYHLEQKSLTLSLLTHLVIDEADKLFE 172 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 K + Q I VSAT E + + V Sbjct: 173 MGFLP-----------------DVYKVFAYLPKIKQVILVSATLPTQLSEFVSFGLNEPV 215 Query: 413 VRPTGLLDPIIEVR---PVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE 467 + I E + ++ ++ +S + + A ++ + +V T+ E L Sbjct: 216 LAKLDQDQHINEQLQMSFIFSRNEEKISVLLRLLAKHKDLKTIVFVATRHHVEFFRTLLL 275 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + G + ++ +D R+ + R + +L+ ++ GLD+P V LV D Sbjct: 276 KLGYSISCVYGTMDMDNRVIEMSRFRSNKTRILLVTDVASRGLDIPLVDLVINFD----- 330 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 F S + I +GR AR G A+ S I + Sbjct: 331 FPYSTKLFIHRVGRTARAGRQGLAVSIVTNKDFSFLLQILYKLNKTL 377 >UniRef50_O96264 DEAD/DEAH box helicase, putative n=9 Tax=Eukaryota RepID=O96264_PLAF7 Length = 562 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 42/356 (11%), Positives = 104/356 (29%), Gaps = 20/356 (5%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + + + L N + ++ + +++ N + G Sbjct: 206 KTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGM--NLLINICTIYGGVD 263 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKF 379 T L ++V + + + + E L ++ K Sbjct: 264 IVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKL 323 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII-----EVRPVATQVDD 434 T SAT + + + V + + + Sbjct: 324 LLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKY 383 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ T T A+ L + G + LH + +R+ + ++ Sbjct: 384 TYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKV 443 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 ++++L+ + GLD+ ++ +V D S + I +GR AR GK+I + Sbjct: 444 NKYNILISTQVGARGLDLQDIKIVINFDI------CSCKEYIHRVGRTARAGRSGKSITF 497 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN----KKVVDILALGQNIAK 605 + AI + ++ + +E+ + ++ +I Sbjct: 498 VTQYDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEALRLSEIEMKENQELY 553 >UniRef50_Q5KDK3 ATP-dependent RNA helicase ROK1 n=2 Tax=Filobasidiella neoformans RepID=ROK1_CRYNE Length = 620 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 105/348 (30%), Gaps = 33/348 (9%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 L P L + + + + +V + + + D + + Sbjct: 297 LGIDMLVATPERLHHLIDSRRISLARTKYVILDESDRLLSSDFLPQVEPIL--------- 347 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIE 424 A Q ++SAT + + D VR +D + Sbjct: 348 -------SACSNPAVQKCFLSATMPAGAESLAKKWLKDGGVRVVVGVKDSAVTTVDQSLL 400 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L + + L+ + AE+L + L G +V +H + Sbjct: 401 YTGSESGKLLALRNLISSGQLPYPSLIFVQSIDRAEELYKTLVLDGIKVDAVHGGKAKTK 460 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R E I+D R+G +LV +L G+D V +V D F ++ S I IGR R Sbjct: 461 RDEAIKDFRVGAVWMLVVTEVLARGMDFRGVKVVINYD-----FPQTVPSYIHRIGRTGR 515 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 GKAI + + + I R P KK + + Sbjct: 516 AGRPGKAITFFNIEDGPYLRTIANVLRSSGCPVPEYMLDMKKPTKNEKKKLAKAPPKRKA 575 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + + V K L+ + +G + + E Sbjct: 576 VGGGGRDLNREAGKKKKQMVEASKKRKMLE---RKGKGGNEEKNDDEE 620 >UniRef50_B2W6H0 ATP-dependent RNA helicase SUB2 n=4 Tax=Saccharomyceta RepID=B2W6H0_PYRTR Length = 471 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 42/348 (12%), Positives = 97/348 (27%), Gaps = 35/348 (10%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 T ++ + L L E R + + G + Sbjct: 141 LATLQQMDEKPEAGAATILVMCHTRELAYQIRNEYNRFAKFLPEVRVGVFYGGTPVQKDI 200 Query: 309 YSRFL---SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 P + + L + + H + + M Sbjct: 201 ELLSNKDSHPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQ------------ 248 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----- 420 + N Q + SAT + + + Sbjct: 249 ----PDMRNDVQAIFRATPQHKQVMMFSATLNKDVRVVCKKFMQNPLEIYVDDEKKLTLH 304 Query: 421 --PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 ++ + + L+++ N +V++ + +L + L E +HS Sbjct: 305 GLQQYYMKLDEKEKNRKLNDLLDSLEFN-QVIIFVRSTLRCSELDKLLRECNFPSTAVHS 363 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 I ER++ ++ + + + V ++ G+D+ +++ D + + Sbjct: 364 GISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMP-----DKADAYLHR 418 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 +GRA R G +I + +P + E R + + E+GI Sbjct: 419 VGRAGRFGTKGLSISFVS--SPDDEAVLKSIEERFQVELPEFPENGIE 464 >UniRef50_B3RR31 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RR31_TRIAD Length = 497 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 46/326 (14%), Positives = 103/326 (31%), Gaps = 31/326 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++T E+ + + K + + + L + ++ +T R + G Sbjct: 192 PLIHMTFFEKDDEQEQAPKVLILSPTRELCIQIEDQCKEIMTGRLPNMKTCLIVGGLPLP 251 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + Y + P L D + + V I ++ M + ++ Sbjct: 252 QQLYRLKQGIQFVIATPGRLIDIISKHEINFSKVKTVVIDEVDAMMQLGFEKQVEQ---- 307 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----- 420 + QT+ SAT + + + + + G + Sbjct: 308 -------------IMQVIPRDHQTLMFSATVTVGVEKMTSVMLSNPIKISVGKPNSLNPS 354 Query: 421 --PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE-EHGERVRYLH 477 ++ ++ L + I + L+ +K A+ L + + + R LH Sbjct: 355 VKHLVLWVEEQSKKKMLFTIINDGKHFHPPTLIFVASKIGADFLADAINAKCRIRAASLH 414 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 D +R+ ++ G+ +LV + G+D+ V V D + I Sbjct: 415 GDKPQQDRINTLKLFLEGKHPILVTTGVAGRGIDLECVKQVIHFDLPT-----NIHEYIH 469 Query: 538 TIGRAARNVN-GKAILYGDKITPSMA 562 +GR R + G AI + + + Sbjct: 470 QVGRTGRLHSLGWAISLINNDSKDIL 495 >UniRef50_Q0BUS0 ATP-dependent RNA helicase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BUS0_GRABC Length = 731 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 93/332 (28%), Gaps = 18/332 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L + + +++ EL + G + G L Sbjct: 109 DERLGQAGAPLALIVAPTRELAMQVQQELLWLYGPA--GARVVSCIGGMDARREAQALER 166 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV +G R R L E L + + + +T+ Sbjct: 167 GCHIVVGTPGRLCDHLGRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRTL 226 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + T +D + +++ +R Sbjct: 227 LFSATIAREIAALAKRYQTNALRIDTVSRNKPHADIDYRVVRVLPHEARHSVVNVLRFY- 285 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V T+ L E G L ++ ER + LR G+ V V Sbjct: 286 -DAPIAMVFCGTREEVRHFQASLMERGFSSVALSGELSQTERSRALHLLREGQARVCVAT 344 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP-SMA 562 ++ GLD+P + LV D + +L+ GR R + + A Sbjct: 345 DVAARGLDLPALDLVIHADLPT-----NSATLLHRSGRTGRAGRKGVSVLIAPVNRQRKA 399 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + T R + I+ + + + Sbjct: 400 DQLLHTAGIRAEWTPVPTVEEISIRDRERMLE 431 >UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4R1_HYPNA Length = 708 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 50/374 (13%), Positives = 99/374 (26%), Gaps = 31/374 (8%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 ++ + S + + E L L E + L Sbjct: 41 LVSARTGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYA 100 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T ++ G E + P L D++ V + + Sbjct: 101 NTNAEIATCV-GGMDMRDERRALERGAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEAD 159 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + L+ +T+ SAT + Sbjct: 160 EMLDLGFREELELILED-----------------TPKERRTLMFSATVPKGIAALATRYQ 202 Query: 409 VDQVVRPTGLLDP------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + T + ++ + I + + E +V T+ L Sbjct: 203 KNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIVRHSDT-ESAIVFCSTRASVNHL 261 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L G V L + ER + LR G V + ++ GLD+P++ LV D Sbjct: 262 VARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATDVAARGLDLPKLDLVIHAD 321 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 R +L+ GR R G + L + + + + + + Sbjct: 322 LP-----RDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERLLQDAKVEARWGRPPSA 376 Query: 582 HGITPQGLNKKVVD 595 + + + + D Sbjct: 377 DEVINRDDTRLLAD 390 >UniRef50_A3BT52 DEAD-box ATP-dependent RNA helicase 29 n=6 Tax=Viridiplantae RepID=RH29_ORYSJ Length = 851 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 114/381 (29%), Gaps = 23/381 (6%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL------LEEQRLTQRT 290 +P + I + AA +++ + + L+ Sbjct: 70 RVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTR 129 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI--G 348 + + + L G+ + F+ L + +++ + + Sbjct: 130 DLATQTLKFAQQLGKFTDLKISL--IVGGDSMESQFEELAENPDIIIATPGRLVHHLAEV 187 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 E L + + QT+ SAT + + + Sbjct: 188 EDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGL 247 Query: 409 VDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + + L ++ LL +R+R + E+ ++ TK E Sbjct: 248 RDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEEQTIIFVSTKHHVEF 307 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L E G + +D R I R + +L+ ++ GLD+P + V Sbjct: 308 LNILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNW 367 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D F + + +GR AR +G A + + + + + E Sbjct: 368 D-----FPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTEE 422 Query: 581 EHGITPQGLNKKVVDILALGQ 601 E +G+N K+ LA G+ Sbjct: 423 ELLKDMEGMNLKIDRALANGE 443 >UniRef50_Q4U8S0 DEAD-box family helicase, putative n=2 Tax=Theileria RepID=Q4U8S0_THEAN Length = 570 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 109/401 (27%), Gaps = 34/401 (8%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLL 335 + + + + ++ G + P D L + + Sbjct: 174 AAQCFQVFKSLSKYLSSKAILLTGGIPIKEQENRLRQFPETIICTPGRALDMLINSSSIN 233 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + V + + + + L+ ++ QT+ SAT Sbjct: 234 VENIEVVIMDEADKLLELG-----------------FRDECLQVLKYCNRNRQTMLFSAT 276 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERV 449 E +V+ V + + + + ++ Sbjct: 277 LTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMIPKEEYREACALYLCTKYSKDKT 336 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TKR A + + LH ++ +R E + + GE D L+ L G Sbjct: 337 ILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRFESVERFKNGEIDYLLASELASRG 396 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGET 568 LD+P V V +D I +GR AR +GKAI S K Sbjct: 397 LDIPGVKTVINVDLPT-----DITRYIHRVGRTARMGSHGKAITLYVDEQRSQVKL---F 448 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP-DNVPMDM 627 ++ ++ + ++ D Sbjct: 449 LKKTSDIGATLSKNKKKVTSATLNKYKTKIDELEEKIKELLLEENIEKDIKMCDATLKTH 508 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + +++ + A EFEEA + ++ + Sbjct: 509 GDQDREKRKWFRSKKDKKMASKEEFEEANRKTQRMVDKEQK 549 >UniRef50_D2UYJ4 ATP-dependent dead box RNA helicase n=1 Tax=Naegleria gruberi RepID=D2UYJ4_NAEGR Length = 892 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 106/362 (29%), Gaps = 18/362 (4%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 +++R F+P + I + L R + Sbjct: 52 QIKRCGFFNPTP---IQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERLDYKHSSIV 108 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + L++ + G + + G+ F+ L A+ +++ Sbjct: 109 GARAVIIVPTRELVLQVNKVIYDFIGKTSDLKT-CMLFGGKSMEGQFERLSANPDIIIAT 167 Query: 340 SHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I R E L + + QT+ SAT + Sbjct: 168 PGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTLLFSATLPS 227 Query: 399 YELEKSGGDVVDQVVR----PTGLLDPIIE---VRPVATQVDDLLSEIRQRAAINERVLV 451 E S + + + D I +V LL + + E ++ Sbjct: 228 AVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNSVISHRETTII 287 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T+ AE + ++ +D RME + R GE ++L+ ++ G+D Sbjct: 288 FIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILLVTDVAARGID 347 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 +P+V+ V + F + + +GR R G A + Sbjct: 348 IPDVNNVINYN-----FPGKPKLFVHRVGRVGRAGKVGTAYSLIAPDEVPFFLDLELFLG 402 Query: 571 RR 572 R+ Sbjct: 403 RK 404 >UniRef50_Q7S2N9 ATP-dependent RNA helicase has-1 n=65 Tax=Eukaryota RepID=HAS1_NEUCR Length = 578 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 94/338 (27%), Gaps = 35/338 (10%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G E P L D+L + + + I + + Sbjct: 212 VVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFE 271 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRP 415 + + + QT+ SAT + + + + Sbjct: 272 DEMRQI----------------IKILPKEDRQTMLFSATQTTKVEDLARISLRPGPLYVN 315 Query: 416 TGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 V V LL + ++V+V + + +E L+ Sbjct: 316 VDEEKQFSTVEGLDQGYVVVDADKRFLLLFSFLKKMQKKKVIVFFSSCNSVKYYSELLQY 375 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 +V LH +R + + L+ ++ GLD+P V + D Sbjct: 376 IDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQFDPP---- 431 Query: 529 LRSERSLIQTIGRAARNV--NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 R I +GR AR G+++L+ + + + + + + + Sbjct: 432 -DDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLAHL-KAAKVPVVEYDFPKSKILN- 488 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++ ++ + ++ G ++ Sbjct: 489 --VQSQLEKLIGQNYYLNQSAKDGYRSYLHAYASHSLR 524 >UniRef50_UPI0001C428F3 ATP-dependent RNA helicase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C428F3 Length = 454 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 102/344 (29%), Gaps = 33/344 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F + +E + + ELA++ L+ + Sbjct: 47 QSQTGTGKTLSFLLPILDKIDPAKEEVQAIITAPTRELASQLFDELKKLLEHCPEE---- 102 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + G + D + LLV + + + + Sbjct: 103 -EMIHAKLLVGGTDRNRAIEGLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQ 161 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M K A Q + SAT + Sbjct: 162 MLDMG-----------------FIADVDKVASRMAEDLQMMIFSATIPEKLQPFLKKYMN 204 Query: 410 DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTE 464 D IE R V + D L+ + A +V T TK A+++T Sbjct: 205 DPRHVQVEPKHVTASKIEHRIVPLRNRDKLTFTVELAKSINPYFAIVFTNTKEQADEVTA 264 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 ++E G V LH + +R +I++ ++ + LV +L G+D+ V+ + Sbjct: 265 AMQEAGLNVECLHGGLQPRQRKQIMKQVKEVKMQYLVATDLAARGIDVKGVTHIIN---- 320 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 G + + +GR AR +G A ++ + + + Sbjct: 321 -FGLPKDLDFYVHRVGRTARAGADGVAYTIFEQNDQLAVEKLLK 363 >UniRef50_Q9NVP1 ATP-dependent RNA helicase DDX18 n=124 Tax=cellular organisms RepID=DDX18_HUMAN Length = 670 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 39/340 (11%), Positives = 94/340 (27%), Gaps = 39/340 (11%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G E P L D++ + Sbjct: 284 LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKN----------------L 327 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVR- 414 + + E L + + + QT+ SAT + + + + + Sbjct: 328 QCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVG 387 Query: 415 --------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 L+ V P + L + +++ ++++V + + E L Sbjct: 388 VDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK--NRKKKLMVFFSSCMSVKYHYELL 445 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 V +H +R + L+ ++ GLD+PEV + D Sbjct: 446 NYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPP-- 503 Query: 527 GFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + I +GR AR G A+L + + ++ + + Sbjct: 504 ---DDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYL----KQSKVPLSEFDFSWS 556 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++ ++ + K+ + + ++ Sbjct: 557 KISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK 596 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 60/428 (14%), Positives = 123/428 (28%), Gaps = 40/428 (9%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P + + I+ A + Q + + E + Sbjct: 601 TKPMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPF 660 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 N G L A + V+ +H + + + Sbjct: 661 MVDAVNR------FKSGAKQKETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQ 714 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-P 421 +G + + ++ATP L S + + T D Sbjct: 715 RFGVEHKER--------LKHLRATVDVLTMTATPIPRTLHASLLGIREISNLETPPADRQ 766 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSD 479 +E L + I + +V + ++ +E + H Sbjct: 767 PVETHITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVGHGQ 826 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 +D + + + E D+LV ++ GLD+P + + I +AD G L Q Sbjct: 827 MDAHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIFIDEADTYGLA----DLHQLR 882 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ + + + K + T +RR K + E G G + D+ Sbjct: 883 GRVGRSKHRAYAYFI----VNPLKLLNPTAQRRLKAIEEFTELG---AGFKIAMRDLEIR 935 Query: 600 GQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---A 655 G I + G + ++ + L+ + L+ + A ++ + + Sbjct: 936 GAGNILGGEQSG--------HIAAIGYELYCQLLENAVRALKHQPPKVAVDVVVDLPWPS 987 Query: 656 AQIRDQLH 663 RD + Sbjct: 988 YLPRDYVQ 995 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 88/342 (25%), Gaps = 16/342 (4%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 A + E + L G T+ G GS A + A+++ +V+ P+ Sbjct: 16 ALPSLLHRTEGWTEMRAALAAG-RSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVE 74 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 +M F + + T Sbjct: 75 VEPWAEDMASFLGTRPAVFEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGG------- 127 Query: 130 MLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 E VVV +SA+ L G I++ + L Y R D Sbjct: 128 -AEGPPKVVVCGISAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYKRVDAVE 186 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F RG + DIFP +S R+E F +EVE L F + + + R T+ P Sbjct: 187 FPGEFSRRGGICDIFPPDS-PDPFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTLLPTDQ 245 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNK--LLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + + + + T G+ Sbjct: 246 GTAGARPAKGHLADYLPPDSWVVLIEPRDLREQAKHFHERVSTTDGLHTTEQAFA---GL 302 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + P H ++ Sbjct: 303 MKLPSVVLSALPRPSVEASVHLRVESVNRFSGSVHRVRDELD 344 >UniRef50_C7QBM5 DEAD/DEAH box helicase domain protein n=16 Tax=Actinomycetales RepID=C7QBM5_CATAD Length = 854 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 77/284 (27%), Gaps = 33/284 (11%) Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + YS P L D + + + + + M Sbjct: 170 VYGGAPMYKQVYSLRRGVELLVATPGRLTDLIEQGECDLSEVEIAILDEADQMADMGFMP 229 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT- 416 T + Q + SAT E + D V+ Sbjct: 230 IVTEL-----------------LSQTDPTGQRLLFSATLDGAVDELVRQYMTDPVLHSVT 272 Query: 417 ------GLLDPIIEVRPVATQVDDLLSEIRQRA---AINERVLVTTLTKRMAEDLTEYLE 467 +D + + A + + R ++ TK A+ + E + Sbjct: 273 ADSEDSAQMDHHLLIVEPADKSMVTAEIAARHTPGDDDGRRTILFARTKLGADRIAEKIR 332 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 E G LH + R + + D + G VLV ++ G+ + + LV +D Sbjct: 333 EAGVSALALHGGMTQRARTKTLADFKEGRVPVLVATDVAARGIHVDGIDLVLHVD----- 387 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + + GR AR +G + + E Sbjct: 388 PAGDPKDYLHRAGRTARAGESGTVVTLVLPKQRKSTMRLLEQAG 431 >UniRef50_Q7RYZ7 ATP-dependent RNA helicase dbp-8 n=2 Tax=Sordariaceae RepID=DBP8_NEUCR Length = 626 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/423 (14%), Positives = 116/423 (27%), Gaps = 50/423 (11%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E+ + + F + + I + ELA + Sbjct: 228 EILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELA---------LQ 278 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL----PADGLL 335 ++E+ + ++ G + P L D++ Sbjct: 279 IMEQVIALSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICG 338 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + + +G LP QT+ +AT Sbjct: 339 LRRVKFIVLDEADRLLANSG--------HGSMLPD---VEECFSVLPPPSERQTLLFTAT 387 Query: 396 PGNYELEKSGG---DVVDQVVRPTGLLDPIIE---------VRPVATQVDDLLSEIRQRA 443 S V + PV + L + Sbjct: 388 MTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLHMFLLTPQ 447 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +++ V++ A+ L L RV LHS + +R++ + R +LV Sbjct: 448 NVDKSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVAT 507 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ GLD+PEV +V D R I +GR AR G A+ + + + Sbjct: 508 DVAARGLDIPEVKIVINYDIP-----RDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLV 562 Query: 563 KAIGETERRREKQ--------QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 AI + R+ + + + G K+ + Q K K + Sbjct: 563 LAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQKEVGGKRKRGKEK 622 Query: 615 RPI 617 Sbjct: 623 LRA 625 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 60/428 (14%), Positives = 126/428 (29%), Gaps = 40/428 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A Q + M + Sbjct: 572 PMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTFTQRM--GSFGV 629 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + E + + V+ +H + + + Sbjct: 630 RVEMLSRFRTPKQQREIMER----VAEGKIDVLIGTHRILNPDVEFHDLGLLIIDEE--- 682 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 + + + + +SATP L + D + + D + + Sbjct: 683 -----QRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLPV 737 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 E + + + R+ + +L E G + H + Sbjct: 738 ETYVAEYDDGMVREALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMT 797 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ G+FDVL+ ++ GLD+P + + I A+ G + L Q GR Sbjct: 798 EDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQ----LYQMRGR 853 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + K + + E ++R + + E G G + D+ G Sbjct: 854 VGRSSRLAYAYFLYKKD----RVLSEVAQKRLQAIRDFTELG---AGFKIAMRDLEIRGA 906 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----LMMQHAQNLEFEEAA 656 + + V D+ + L++ I+ L+ + +E + A Sbjct: 907 GNLLGAEQHG-------QITGVGFDLYCRLLEKTINTLQNGGNPDEPVPPDPVIEMKLDA 959 Query: 657 QIRDQLHQ 664 I D Sbjct: 960 YIPDDYID 967 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 17/242 (7%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLA 64 + + Q + +R + + L G+TGS K + + +P ++L Sbjct: 1 MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 N+ E+ F+P+ A+ P+S + + NE + R Sbjct: 61 VNRESIRAQRRELAHFYPDLAMR------------ELYPAS-LIHGQVDTRNEQVMAERA 107 Query: 125 SATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +A + ++ + ++ A+ A P+ ++ L L VG I+Q ++ +L + Y R Sbjct: 108 AALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +Q G VRG+++D+FP D +R+E FD ++ + FD T + + TI + I Sbjct: 168 TEQVDTLGQVAVRGDILDVFPINGKDS-VRIEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226 Query: 244 YP 245 P Sbjct: 227 MP 228 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 94/338 (27%), Gaps = 54/338 (15%) Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 +LF YL AD L V+DE + + +R + L++ + A Sbjct: 239 SLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLDQETMIQQAG----------- 287 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQR 442 + D+ + + + DLL +++ Sbjct: 288 ---------------ETHLLTVSDLGHPYFPQAPRIHVQVRAMAPYNKNTDLLQKDLKGW 332 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 L+ T+ A L E L+ G + + + + Sbjct: 333 LDQGIHPLIMMGTRDKAAGLAESLKGAGLPMAF--AGQFQGVPETGGQVFA--------- 381 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L G + + + ++D G + R G A+ Y S Sbjct: 382 -GSLTNGFYFWDEKWLLLTESDIFGAQKKRRL-------TKTKGKGPALNYF-----SDI 428 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 KA + +Y I G+++ + + G + + G V + Sbjct: 429 KAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGDKLHVPVEQVGLLHKYVGNEG 488 Query: 623 VPMDM---SPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 P + K Q+ + + + A L A + Sbjct: 489 TPPKLSNMGRKDWQKATRKAQKAITILATELLRLYAQR 526 >UniRef50_C4V744 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V744_NOSCE Length = 490 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 59/384 (15%), Positives = 117/384 (30%), Gaps = 42/384 (10%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L NK E L + + ++ + S + + P L L Sbjct: 115 LTKKLFVNKKNENCDLYYNPKTANQPISVMTIRSDKQELVDYSDANIIIATPGRLIFNLE 174 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + + + + +Y R+ ++ + + F + I Sbjct: 175 KKFINFDNLDTIVFDEADKLYDSTFKRQIDTIKSFIKKD----VQTCMFSATYCKEIRDI 230 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR--------QR 442 + T + ++ ++ + E+ P ++D ++ ++ + Sbjct: 231 FNLITKPDRVYFEADFEIK---------TNVKQEIYPNFKKIDKIVEVLKSLTLVGNWRE 281 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +E+V++ K + L G LH D ER E I + G +L+ Sbjct: 282 TVESEKVMIFVERKVDCLKVANLLNSKGYNSVTLHGDKSQYERNEAISKFKSGLSSILIA 341 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 N+ GLD+ EV LV D R+ I IGR R G+AI + D S Sbjct: 342 TNVAARGLDIREVKLVINYDLP-----RTIDEYIHRIGRTGRAGEEGRAISFFDWKYNSN 396 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K ++ + +L + +K + K+ + + Sbjct: 397 IVD---------GLIKIFSDNKKEIPKV------LLQRNADASKKEFTSVNKAFKPRKNE 441 Query: 622 NVPMDMSPKALQQKIHELEGLMMQ 645 N+ Q I+ Q Sbjct: 442 NIYKYKKTVKNMQYINTSSKSQEQ 465 >UniRef50_B8BWZ3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BWZ3_THAPS Length = 409 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 83/279 (29%), Gaps = 32/279 (11%) Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L + + + + + + + G + Sbjct: 142 DCLISTPLRLVECIERGM-RLNGVRLIVLDEADR----------QNAQSGSSQSRTFLQQ 190 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------------LDPI 422 SAT G S + + TG+ + I Sbjct: 191 IDSILSHLPSTATRALFSATLGPSVRHLSESILRSPIDITTGIHAGIGGNSAAGGASEHI 250 Query: 423 IEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + + + L IRQ A VL+ +K A+ L L G RV +H+ Sbjct: 251 QQELKFVGREEGKLLAIRQLVAEGITPPVLIFLQSKERAQALFGELLYDGIRVDVIHAGR 310 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R + R GE VL+ +L+ G+D V+LV D EG + + IG Sbjct: 311 SASAREASVAKFRKGETWVLICTDLVARGVDFKAVNLVINYDLPMEGV-----TYVHRIG 365 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 R R G+AI + + + I + + Sbjct: 366 RTGRAGRAGRAITFFTEADFENLRTIANVMKLSGCEVPE 404 >UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=Lactobacillales RepID=A5VIX6_LACRD Length = 457 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 70/414 (16%), Positives = 129/414 (31%), Gaps = 21/414 (5%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L + ++ ++ T + ++ N + + + G Sbjct: 54 KTHAFLLPIFSKIKPEDQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTD 113 Query: 322 PPTLFDYLPADGLLVVD-ESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 D L +V + I A+ + E L + + Sbjct: 114 KQHQVDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQI 173 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLL 436 Q + SAT + + VV ++P ++ ++T+ D Sbjct: 174 ASHFPNDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRN 233 Query: 437 SEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 I + LV TK A LT+YLE G +V +H ++ R +R +R Sbjct: 234 QLIYRLLTLGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRD 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 E+ +V +L G+D+ VSLV D + +GR RN G AI Sbjct: 294 LEYQYVVATDLAARGIDIDGVSLVINDDLPT-----DLEYFVHRVGRTGRNGMKGTAITL 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + I + E R K ++G ++ QN KG K Sbjct: 349 YEPAEDDL---IAKLEERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVK 405 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + ++ I E E + + +A + R + H+ Sbjct: 406 KTKKKVKPGYKKRI-----KKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRER 454 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 104/635 (16%), Positives = 203/635 (31%), Gaps = 104/635 (16%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 ++ +G + R +V+A A + +++ + P P Sbjct: 28 LSAAGVALAWHRLA---PRRMVVVAEGDREAEAIANDLRWWLP-------------RIPV 71 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 A +P DT + + RL A ++++ +VVV +V A Sbjct: 72 ALLPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLVASAARLE 131 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L + G + + ++ L + Y R Q G + VRG ++D+ +R++LF Sbjct: 132 RLIVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLAS-PVRIDLF 190 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +EV+RL+ FDP T + V + R EL R+V ++ Sbjct: 191 GDEVDRLAFFDPTTQRSVGDLERV------------------------ELFPAREVRIDT 226 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + + L R + + + L G+ PT+ D + L++V Sbjct: 227 DLAKQLEALAARVPAVADRVEAVLAGREP---PEPLVPLVLGDVAPTVLDIVDEADLVLV 283 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + +R+ +E L AL + L E A + VSA P Sbjct: 284 PAKGMDAVIADRLVAEERSIREALAPTWGLEADALGSVSLMAEPERLRAVRARLVSADPA 343 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + + + IR V+V T Sbjct: 344 GFGARLG----------------------VSHRDLAGVFGRIRSARRDGVHVVVATHGSE 381 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A + + L E G V + + L V G++L+ +++ SL Sbjct: 382 RARHVAQRLGEEGIDV----------QLASVATCLEGHGVRVAAGLDLVES-VELEPASL 430 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 V I DA + R+ + T + + D + S + Sbjct: 431 VVIADA-SLVRPTAPRASVPTRTTGG-------LSFDDLVEGSFVV------HEAYGVAR 476 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 Y G++++ +++ + + P V + + ++ Sbjct: 477 YRGLVRQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGSE-----------EPRLT 525 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 L G Q + A ++ +L L + +AA Sbjct: 526 RLRGGDWQRQVHRARRAAQEVAQELVVLYQRRLAA 560 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 120/433 (27%), Gaps = 41/433 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + E Sbjct: 603 PMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTTLLAAQHAEVFRERFEGTPIRV 662 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ + ++ L + L V +H + R + + Sbjct: 663 GMLSRLST------AREAASIRAELASGELDVCIATHAALGASTRFARLGLLVIDEEQRF 716 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + +SATP LE S + D V T +D Sbjct: 717 GVRHKEQ--------LKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPI 768 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V ++ IR+ +V R E + + R L H + Sbjct: 769 LTHVGPFDPAVVTEAIRRELLREGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLP 828 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + GE DVLV ++ G+D+ + + + A++ G + L Q GR Sbjct: 829 PAALERTMAQFWHGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQ----LHQLRGR 884 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ T I + R + N + G G + D+ G Sbjct: 885 VGRSGRQAYAYLLTSTTGG----ISDIALERLRTVAENTDLG---AGYRIAMRDLELRGA 937 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE-----AA 656 + V ++ + + +++ ++G + + + E A Sbjct: 938 GTVLGMRQSG-------HVSEVGYELYVRLVAEEVARMDG-VEEPTPDREVALDVPVSAL 989 Query: 657 QIRDQLHQLRELF 669 D + + Sbjct: 990 LAEDYVAEAETRM 1002 >UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RJU3_TRIAD Length = 512 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 110/393 (27%), Gaps = 44/393 (11%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R+ L D+ ++ L+ + T + ++ I + + E L R K Sbjct: 108 RLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLIHRIK 167 Query: 273 VLLEN------NKLLEEQRLTQRTQFDLEMMNE----------------LGYCSGIENYS 310 E + + + + G + + Sbjct: 168 EEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSLCHVSKYRVVGVIGGKKQKLLEKA 227 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L Y + + D +H+ + + ++ + + ++ Sbjct: 228 LETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEKIKIRG 287 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPII 423 Q V AT + + T + I Sbjct: 288 GKPMSLDT----LQKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQQDI 343 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ LL +++R + ++ T L YL + + LH + Sbjct: 344 LKLKQTSKAGTLLKLLKER--RHGSTIIFCNTVDSCNWLGHYLAKVDLPLLRLHGGMPPE 401 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER+ + GE+++L+ ++ GLD V V D S I GR Sbjct: 402 ERLIRYDKFQRGEYNILIATDIASRGLDTKNVECVINFDFPI-----SVADYIHRAGRTG 456 Query: 544 RNVN---GKAILYG-DKITPSMAKAIGETERRR 572 R + G+ I + S+ K + E R Sbjct: 457 RVGSKCTGRVISLVSSRKELSLTKLLEEAAARN 489 >UniRef50_D2UXS9 DEAD-box ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2UXS9_NAEGR Length = 887 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 123/398 (30%), Gaps = 20/398 (5%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ E R G L + +++ Sbjct: 338 RKETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQVLQSKPEIIIA 397 Query: 339 ESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + +R D L E L + + + A QT+ SAT Sbjct: 398 TPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQTMLFSATM 457 Query: 397 GNYELEKSGGDVVDQVVRP----TGLLDPIIEVRPVATQVDDLL---SEIRQRAAI--NE 447 + + + + + TG+ + + ++++ + + Sbjct: 458 TDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQAILLSLCTRSFPS 517 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 V++ TK M L L G +V L S + R++ + E D LV ++ Sbjct: 518 EVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHETDFLVCTDVAS 577 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ V V D + ++ I +GR AR +G A+ + + ++ + I Sbjct: 578 RGLDIKGVKTVINFDMPL-----NLKTYIHRVGRTARAGASGVAVSMSSESSIAILRKIV 632 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 +++ + + + + K+ ++ + + + + E + Sbjct: 633 RHSKKKGQSVQQRVIPTESIEFWTDKIEEMKPQLKEL--EQQLRMEEEMQQAEMLAAKNE 690 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + + ++ E + + Q+ + Sbjct: 691 NIEEFREDIMSRPRKE-WIMSKAQREELNEKAKAQMVE 727 >UniRef50_Q4N4B1 ATP-dependent RNA helicase, putative n=4 Tax=Eukaryota RepID=Q4N4B1_THEPA Length = 470 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 103/338 (30%), Gaps = 28/338 (8%) Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + LLE + L L + L++ +L + G + L Sbjct: 100 LQKLLEKPQRLFSLILAPTRELSLQIKEQLISL--GSEIGLDVCLILGGLDMVSQALQLS 157 Query: 331 ADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 ++V + + + + L E L + D+ K Sbjct: 158 KKPHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKV 217 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-----QVDDLLSEIRQRA 443 T SAT + + ++ + E + Sbjct: 218 TYLYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWK 277 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE------- 496 ++V T ++ +T +L+ + LH + ++R+ + + G+ Sbjct: 278 YSTSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQP 337 Query: 497 ------FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGK 549 F++LV ++ GLD+P V LV D + + I +GR AR +G Sbjct: 338 HIISGLFNILVVTDVGSRGLDIPFVDLVINFDVPN-----TSKDYIHRVGRTARAGKSGI 392 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 ++ + + ++ ++ K E + + Sbjct: 393 SLTLITQYDIESFQRTEYALNKKLEEYKDISEEEVYNK 430 >UniRef50_Q93ZG7 DEAD-box ATP-dependent RNA helicase 38 n=4 Tax=Viridiplantae RepID=RH38_ARATH Length = 496 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 116/377 (30%), Gaps = 37/377 (9%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 F+ + ++P P H + + +R L + L Sbjct: 111 KFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICP 170 Query: 286 LTQRTQFDLEMMNELGYCSGIEN---------------YSRFLSGRGPGEPPPTLFDYLP 330 + ++E++ ++G +GI +S P TL ++ Sbjct: 171 TRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKWMA 230 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 L + + + M D R ++L + +K Q + Sbjct: 231 FKRLGLNHLKILVFDEADHMLATDGFRDDSL-------------KIMKDIGRVNPNFQVL 277 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRA 443 SAT + V D D V P +++ + Sbjct: 278 LFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMEL 337 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + ++ TK A+ + + L E G V +H ++ +R +I+++ + VL+ Sbjct: 338 GDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIAT 397 Query: 504 NLLREGLDMPEVSLVAILDADK--EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ G D V+LV + E + +GRA R A+ Sbjct: 398 DVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWD 457 Query: 562 AKAIGETERRREKQQKY 578 + + + E+ E K Sbjct: 458 KEVMEKIEKYFEANVKE 474 >UniRef50_B3L794 DEAD/DEAH box ATP dependent DNA helicase,putative n=6 Tax=Plasmodium RepID=B3L794_PLAKH Length = 605 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 77/280 (27%), Gaps = 30/280 (10%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDR 355 + G E P L D++ + + + I + + + Sbjct: 257 IIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLISLIIDEADRLLQIGF 316 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + L + QT SAT + + Sbjct: 317 EEEINL-----------------IVKRLPKKRQTALFSATQTTKVENLIRLSLQKPIFIE 359 Query: 416 TGLLDPIIEVRP-----VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 +E V LL + I+++++V + + L Sbjct: 360 VTTKIATVERLQQGYALVDEDKRFLLLFTFLKRNISKKIMVFFNNCMSVQFYNDLLNYID 419 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H +R++ + + +L+ N+ GLD+P V+ + D Sbjct: 420 IPTFCIHGKKKQNKRLKSFSEFSAAQSAILLCTNVAARGLDIPNVNYIIQYDPP-----D 474 Query: 531 SERSLIQTIGRAARNV--NGKAILYGDKITPSMAKAIGET 568 + I +GR R NG AI++ K + Sbjct: 475 DSKEYIHRVGRTCRGKDSNGSAIIFLMKHELKFLNYLKFY 514 >UniRef50_A0C321 Chromosome undetermined scaffold_146, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0C321_PARTE Length = 564 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 48/417 (11%), Positives = 118/417 (28%), Gaps = 37/417 (8%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLE-NNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 ++ P + ++ ++ A E + E + + + Sbjct: 170 FLLPIMQRFGNLKNLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQ 229 Query: 308 NYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 P D L + L + + + + + ++ Sbjct: 230 ETELRKYPDIIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQ----- 284 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--------GL 418 + + QT+ +SAT + S + + + GL Sbjct: 285 ------------ILQATSKDRQTVLISATLNATVKQLSLLALNNPIKVNVDFVGGLAYGL 332 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 ++ +R + + E+ ++ TK L L LH Sbjct: 333 KQYLLRIRSNQDSDREATLITLLKTKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHG 392 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++ +R++ D + G+F L+ +L GLD+ +V V + I Sbjct: 393 NLSQQQRIQAYEDFKEGKFQFLLATDLAARGLDLTDVKAVINYEIP-----YEVTRYIHR 447 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 +GR AR G ++ + + R+ ++Q + + +++ + Sbjct: 448 VGRTARIGAQGISVTICLENE---VVKFKKMIRQSKQQLFKMIADTNKVRQMRRQIQQLE 504 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE-LEGLMMQHAQNLEFE 653 + + K + + + + M I E +G + + Sbjct: 505 PQIRKVIKEEVAEMEVRKTEMMTQKGEIPMEESEDDDNIPEPKKGKPQMKNKKRAKK 561 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 421 e-116 UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 419 e-115 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 405 e-111 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 402 e-110 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 389 e-106 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 386 e-105 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 383 e-104 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 380 e-104 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 379 e-103 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 374 e-102 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 370 e-100 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 369 e-100 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 369 e-100 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 368 e-100 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 365 3e-99 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 348 3e-94 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 336 1e-90 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 314 9e-84 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 313 1e-83 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 309 2e-82 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 309 2e-82 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 306 2e-81 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 303 1e-80 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 303 1e-80 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 300 1e-79 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 299 2e-79 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 298 3e-79 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 297 8e-79 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 296 2e-78 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 294 6e-78 UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoe... 294 7e-78 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 294 8e-78 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 293 1e-77 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 293 1e-77 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 293 2e-77 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 292 2e-77 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 292 4e-77 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 292 4e-77 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 291 6e-77 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 291 6e-77 UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Gl... 291 7e-77 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 290 1e-76 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 289 2e-76 UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 288 4e-76 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 288 5e-76 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 288 7e-76 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 287 1e-75 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 287 1e-75 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 286 1e-75 UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=O... 286 1e-75 UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Ta... 286 2e-75 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 286 2e-75 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 285 3e-75 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 285 4e-75 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 285 5e-75 UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 285 5e-75 UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 285 5e-75 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 285 6e-75 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 284 7e-75 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 284 8e-75 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 284 8e-75 UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa Re... 283 1e-74 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 283 1e-74 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 283 1e-74 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 283 2e-74 UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 ... 283 2e-74 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 283 2e-74 UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 282 2e-74 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 282 2e-74 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 282 3e-74 UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 282 3e-74 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 282 3e-74 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 282 4e-74 UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 281 5e-74 UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Te... 281 5e-74 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 281 6e-74 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 281 6e-74 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 281 7e-74 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 281 8e-74 UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacte... 281 8e-74 UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 T... 281 8e-74 UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 281 8e-74 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 280 1e-73 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 280 1e-73 UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular org... 280 1e-73 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 280 1e-73 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 280 1e-73 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 280 2e-73 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 280 2e-73 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 280 2e-73 UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 279 2e-73 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 279 3e-73 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 279 3e-73 UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria R... 279 3e-73 UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 278 3e-73 UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 278 4e-73 UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=... 278 4e-73 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 278 4e-73 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 278 5e-73 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 278 6e-73 UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA 278 6e-73 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 278 7e-73 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 277 8e-73 UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 ... 277 8e-73 UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 T... 277 9e-73 UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax... 277 9e-73 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 277 1e-72 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 276 1e-72 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 276 2e-72 UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 276 2e-72 UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=C... 276 2e-72 UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=c... 276 2e-72 UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 276 2e-72 UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Ta... 276 2e-72 UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepI... 276 3e-72 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 275 3e-72 UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteo... 275 3e-72 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 275 3e-72 UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Cl... 275 4e-72 UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 275 5e-72 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 275 5e-72 UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-depend... 275 5e-72 UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micr... 275 5e-72 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 275 5e-72 UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax... 275 5e-72 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 274 7e-72 UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME 274 7e-72 UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular orga... 274 8e-72 UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria Rep... 274 9e-72 UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoo... 274 9e-72 UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabd... 274 1e-71 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 273 1e-71 UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi... 273 1e-71 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 273 2e-71 UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5... 273 2e-71 UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=De... 273 2e-71 UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, s... 273 2e-71 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 273 2e-71 UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular or... 273 2e-71 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 273 2e-71 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 272 3e-71 UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttle... 272 3e-71 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 272 3e-71 UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase p... 272 3e-71 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 272 3e-71 UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cell... 272 3e-71 UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA 272 3e-71 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 272 3e-71 UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax... 272 4e-71 UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Ni... 272 4e-71 UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-depend... 271 4e-71 UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24... 271 4e-71 UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box ... 271 4e-71 UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Ta... 271 4e-71 UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Ta... 271 5e-71 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 271 5e-71 UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, s... 271 5e-71 UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Al... 271 5e-71 UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Cio... 271 6e-71 UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS 271 6e-71 UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmat... 271 7e-71 UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, s... 271 8e-71 UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana Re... 271 8e-71 UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Ni... 270 9e-71 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 270 1e-70 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 270 1e-70 UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 ... 270 1e-70 UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zy... 270 1e-70 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 270 1e-70 UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase prote... 270 1e-70 UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/M... 270 1e-70 UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=F... 270 1e-70 UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=F... 270 1e-70 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 270 1e-70 UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 270 2e-70 UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Ma... 270 2e-70 UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 270 2e-70 UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI 270 2e-70 UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospi... 269 2e-70 UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 ... 269 2e-70 UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetaz... 269 2e-70 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 269 3e-70 UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Ba... 269 3e-70 UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria... 269 3e-70 UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gru... 269 3e-70 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 269 3e-70 UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=B... 269 3e-70 UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulv... 269 3e-70 UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=A... 268 3e-70 UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Proc... 268 4e-70 UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacte... 268 4e-70 UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospiri... 268 4e-70 UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza s... 268 4e-70 UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteoba... 268 5e-70 UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genom... 268 5e-70 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 268 5e-70 UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT... 268 6e-70 UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=... 268 6e-70 UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 268 6e-70 UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Ta... 268 6e-70 UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 268 7e-70 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 268 7e-70 UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=B... 267 9e-70 UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bact... 267 9e-70 UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n... 267 9e-70 UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 266 1e-69 UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID... 266 1e-69 UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicu... 266 1e-69 UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=A... 266 2e-69 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 266 2e-69 UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 266 2e-69 UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 266 2e-69 UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms R... 266 2e-69 UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ko... 266 2e-69 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 266 2e-69 UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eg... 266 2e-69 UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 266 2e-69 UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L... 266 2e-69 UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Try... 266 2e-69 UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7... 266 3e-69 UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=... 266 3e-69 UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root R... 266 3e-69 UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Ta... 265 3e-69 UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 265 3e-69 UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=De... 265 3e-69 UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3... 265 3e-69 UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=An... 265 3e-69 UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organism... 265 3e-69 UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=... 265 3e-69 UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteri... 265 3e-69 UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 265 4e-69 UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomona... 265 4e-69 UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family... 265 4e-69 UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment)... 265 4e-69 UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Ta... 265 4e-69 UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Ta... 265 4e-69 UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=ro... 265 4e-69 UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptob... 265 5e-69 UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus ... 265 5e-69 UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=A... 265 6e-69 UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Be... 264 7e-69 UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus... 264 7e-69 UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 T... 264 7e-69 UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=B... 264 8e-69 UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ... 264 9e-69 UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 ... 264 9e-69 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 264 9e-69 UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase p... 264 1e-68 UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 ... 264 1e-68 UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=... 264 1e-68 UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteob... 264 1e-68 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 263 1e-68 UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7... 263 1e-68 UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 263 1e-68 UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 263 1e-68 UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms Rep... 263 1e-68 UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyos... 263 2e-68 UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fe... 263 2e-68 UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabd... 263 2e-68 UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 263 2e-68 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 263 2e-68 UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Strepto... 263 2e-68 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 263 2e-68 UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 263 2e-68 UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH... 263 2e-68 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 263 2e-68 UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase P... 263 2e-68 UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7V... 263 2e-68 UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, puta... 263 2e-68 UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizos... 263 2e-68 UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Ve... 262 2e-68 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 262 3e-68 UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteob... 262 3e-68 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 262 4e-68 UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-depend... 262 4e-68 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 262 4e-68 UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinom... 262 4e-68 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 262 4e-68 UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=P... 262 4e-68 UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bac... 261 5e-68 UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alp... 261 5e-68 UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida ... 261 6e-68 UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteri... 261 6e-68 UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria Rep... 261 6e-68 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 261 6e-68 UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, puta... 261 6e-68 UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brev... 261 6e-68 UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax... 261 7e-68 UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH 261 7e-68 UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Ac... 261 8e-68 UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=A... 261 8e-68 UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=... 261 8e-68 UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 261 8e-68 UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genom... 261 9e-68 UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=De... 261 9e-68 UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 261 9e-68 UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=El... 261 9e-68 UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria Rep... 260 9e-68 UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2... 260 9e-68 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 260 9e-68 UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary f... 260 1e-67 UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=De... 260 1e-67 UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desu... 260 2e-67 UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=B... 260 2e-67 UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Ne... 260 2e-67 UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=F... 260 2e-67 UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9... 260 2e-67 UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreoco... 260 2e-67 UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 260 2e-67 UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomyc... 260 2e-67 UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, put... 260 2e-67 UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=... 260 2e-67 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 259 2e-67 UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa Re... 259 3e-67 UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=B... 259 3e-67 UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria R... 259 3e-67 UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=De... 259 3e-67 UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8... 259 3e-67 UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus P... 259 3e-67 UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepI... 259 3e-67 UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax... 259 3e-67 UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=ce... 259 3e-67 UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCM... 259 3e-67 UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Prop... 258 4e-67 UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 258 4e-67 UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 258 4e-67 UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 ... 258 4e-67 UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae Rep... 258 5e-67 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 258 6e-67 UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 258 6e-67 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 258 6e-67 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 258 6e-67 UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellu... 258 6e-67 UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyos... 258 6e-67 UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulop... 258 7e-67 UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID... 258 7e-67 UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=A... 258 7e-67 UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales ... 258 7e-67 UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Cl... 258 7e-67 UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Ta... 258 7e-67 UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=R... 258 8e-67 UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular orga... 258 8e-67 UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=... 258 8e-67 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 257 8e-67 UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomy... 257 8e-67 UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=be... 257 8e-67 UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 257 9e-67 UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Try... 257 9e-67 UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=B... 257 9e-67 UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter ... 257 9e-67 UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A... 257 1e-66 UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase p... 257 1e-66 UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukary... 257 1e-66 UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole geno... 257 1e-66 UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-... 257 1e-66 UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 257 1e-66 UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23... 257 1e-66 UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 257 1e-66 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 257 1e-66 UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon... 257 1e-66 UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermoph... 256 1e-66 UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepI... 256 1e-66 UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA)... 256 1e-66 UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID... 256 1e-66 UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 256 2e-66 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 256 2e-66 UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 256 2e-66 UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=At... 256 2e-66 UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=E... 256 2e-66 UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 256 2e-66 UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E... 256 2e-66 UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosa... 256 2e-66 UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 256 3e-66 UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 256 3e-66 UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chro... 255 3e-66 UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 255 3e-66 UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Tr... 255 3e-66 UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hy... 255 3e-66 UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 255 3e-66 UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. N... 255 3e-66 UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=... 255 3e-66 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 255 4e-66 UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 255 4e-66 UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lent... 255 5e-66 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 255 5e-66 UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family... 255 6e-66 UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae... 255 6e-66 UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltap... 255 6e-66 UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 T... 255 6e-66 UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=... 255 6e-66 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 255 6e-66 UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured me... 254 7e-66 UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria... 254 7e-66 UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Le... 254 8e-66 UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax... 254 8e-66 UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transc... 254 8e-66 UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=... 254 9e-66 UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Rein... 254 9e-66 UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase P... 254 1e-65 UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 254 1e-65 UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepI... 254 1e-65 UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickett... 254 1e-65 UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase... 254 1e-65 UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipel... 254 1e-65 UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limn... 254 1e-65 UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythr... 253 1e-65 UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 253 1e-65 UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 253 1e-65 UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family... 253 1e-65 UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasi... 253 1e-65 UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=... 253 1e-65 UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1... 253 2e-65 UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 253 2e-65 UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 253 2e-65 UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, puta... 253 2e-65 UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Ak... 253 2e-65 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 253 2e-65 UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Pr... 253 2e-65 UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 253 2e-65 UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n... 253 2e-65 UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dy... 253 2e-65 UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bac... 253 3e-65 UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacter... 252 3e-65 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 252 3e-65 UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudom... 252 3e-65 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 252 3e-65 UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponem... 252 3e-65 UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacter... 252 3e-65 UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuri... 252 3e-65 UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genom... 252 4e-65 UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 252 4e-65 UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Nept... 252 4e-65 UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome... 251 4e-65 UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=V... 251 4e-65 UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candi... 251 5e-65 UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 251 5e-65 UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cell... 251 5e-65 UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 ... 251 6e-65 UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=... 251 6e-65 UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Fi... 251 6e-65 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 251 6e-65 UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Ta... 251 7e-65 UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales ... 251 7e-65 UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=De... 251 9e-65 UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacter... 251 9e-65 UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp... 251 9e-65 UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gam... 250 1e-64 UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter... 250 1e-64 UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=A... 250 1e-64 UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum '... 250 1e-64 UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Po... 250 1e-64 UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase ... 250 1e-64 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 249 2e-64 UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Crypto... 249 2e-64 UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-o... 249 2e-64 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 249 2e-64 UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Lept... 249 2e-64 UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Pir... 249 2e-64 UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacte... 249 2e-64 UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=... 249 2e-64 UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Camp... 249 2e-64 UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Ve... 249 2e-64 UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=ro... 249 2e-64 UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepI... 249 3e-64 UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabd... 249 3e-64 UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 248 4e-64 UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved... 248 4e-64 UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME 248 4e-64 UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 T... 248 4e-64 UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=De... 248 4e-64 UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammapr... 248 5e-64 UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteob... 248 5e-64 UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Euk... 248 5e-64 UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein... 248 6e-64 UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 248 6e-64 UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincent... 248 6e-64 UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 T... 248 6e-64 UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=... 248 7e-64 UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 248 7e-64 UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collins... 248 7e-64 UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoaltero... 248 7e-64 UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Cory... 248 7e-64 UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerot... 248 7e-64 UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=G... 248 7e-64 UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=As... 247 8e-64 UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatim... 247 8e-64 UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudona... 247 9e-64 UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (Dea... 247 9e-64 UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacte... 247 1e-63 UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genom... 247 1e-63 UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter ... 247 1e-63 UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 247 1e-63 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 246 1e-63 UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomyceta... 246 2e-63 UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=An... 246 2e-63 UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 246 2e-63 UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 T... 246 2e-63 UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 T... 246 2e-63 UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum... 246 2e-63 UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacteri... 246 2e-63 UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcr... 246 3e-63 UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase P... 246 3e-63 UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=... 245 4e-63 UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 245 4e-63 UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA 245 4e-63 UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 245 5e-63 UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 ... 244 5e-63 UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccha... 244 5e-63 UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Pr... 244 6e-63 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 244 6e-63 UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospir... 244 7e-63 UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 244 7e-63 UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Su... 244 7e-63 UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteri... 244 7e-63 UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 244 7e-63 UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichop... 244 8e-63 UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Ba... 244 8e-63 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 244 8e-63 UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CB... 244 9e-63 UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiother... 244 9e-63 UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malasse... 244 9e-63 UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasm... 244 1e-62 UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyos... 243 1e-62 UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminoco... 243 1e-62 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 243 2e-62 UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoe... 243 2e-62 UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=... 243 2e-62 UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 ... 243 2e-62 UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Se... 243 2e-62 UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa Re... 243 2e-62 UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorh... 243 2e-62 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 243 2e-62 UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=De... 243 2e-62 UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteri... 242 3e-62 UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Euk... 242 3e-62 UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=G... 242 3e-62 UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 242 3e-62 UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=A... 242 3e-62 UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii Re... 242 4e-62 UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes... 242 4e-62 UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Pla... 242 4e-62 UniRef50_D2KCE8 CNB00610 n=1 Tax=Cryptococcus heveanensis RepID=... 242 4e-62 UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C... 241 5e-62 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 241 5e-62 UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=... 241 6e-62 UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 241 6e-62 UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis R... 241 6e-62 UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 241 7e-62 UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4... 241 7e-62 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 241 7e-62 UniRef50_A3FQ30 Putative uncharacterized protein n=2 Tax=Cryptos... 241 8e-62 UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 241 8e-62 UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema Rep... 241 8e-62 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 241 8e-62 UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfur... 241 9e-62 UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromo... 241 9e-62 UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Meth... 241 9e-62 UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1... 241 1e-61 UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 240 1e-61 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 240 1e-61 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 240 1e-61 UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH 240 1e-61 UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 240 1e-61 UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 ... 240 1e-61 UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Ba... 240 1e-61 UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis... 240 1e-61 UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 240 1e-61 UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi R... 240 2e-61 UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=De... 240 2e-61 UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=De... 239 2e-61 UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammap... 239 2e-61 UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 239 2e-61 UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Ol... 239 2e-61 UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter... 239 2e-61 UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter Re... 239 2e-61 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 239 3e-61 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 239 3e-61 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 239 3e-61 UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gam... 239 3e-61 UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella ma... 239 3e-61 UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Pr... 239 4e-61 UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleos... 238 4e-61 UniRef50_A0C369 Chromosome undetermined scaffold_146, whole geno... 238 4e-61 UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF... 238 4e-61 UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family... 238 4e-61 UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12... 238 5e-61 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 238 5e-61 UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteob... 238 5e-61 UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera ... 238 6e-61 UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=G... 238 6e-61 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 238 7e-61 UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhard... 238 7e-61 UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammapr... 238 8e-61 UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 238 8e-61 UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus t... 238 8e-61 UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aq... 237 9e-61 UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein... 237 9e-61 UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12U... 237 1e-60 UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bactero... 237 1e-60 UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacteriu... 237 1e-60 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 237 1e-60 UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 237 1e-60 UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas Re... 237 1e-60 UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorh... 237 1e-60 UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota ... 236 1e-60 UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 236 2e-60 UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Sp... 236 2e-60 UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6... 236 2e-60 UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella gry... 236 2e-60 UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 236 2e-60 UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=c... 236 2e-60 UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialiste... 236 2e-60 UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergi... 236 3e-60 UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 236 3e-60 UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 236 3e-60 UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=D... 236 3e-60 UniRef50_C5LT44 RNA helicase-1, putative n=3 Tax=Perkinsus marin... 236 3e-60 UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1... 235 3e-60 UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphi... 235 4e-60 UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano Re... 235 4e-60 UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax... 235 4e-60 UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B... 235 4e-60 UniRef50_B6AGA4 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 235 4e-60 UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammap... 235 4e-60 UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 235 5e-60 UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 235 5e-60 UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fi... 235 5e-60 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 235 5e-60 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 235 5e-60 UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostrid... 234 5e-60 UniRef50_D1YEX7 DEAD/DEAH box helicase n=3 Tax=Propionibacterium... 234 6e-60 UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Ta... 234 6e-60 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 234 6e-60 UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase P... 234 6e-60 UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lent... 234 9e-60 UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 ... 234 9e-60 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 234 1e-59 UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genom... 234 1e-59 UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA hel... 234 1e-59 UniRef50_A9UTS4 Predicted protein n=1 Tax=Monosiga brevicollis R... 234 1e-59 UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, s... 234 1e-59 UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=The... 233 1e-59 UniRef50_Q9SA27 DEAD-box ATP-dependent RNA helicase 36 n=14 Tax=... 233 1e-59 UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=... 233 1e-59 UniRef50_Q0UN57 Pre-mRNA-processing ATP-dependent RNA helicase P... 233 2e-59 UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 233 2e-59 UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira... 233 2e-59 UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis R... 233 2e-59 UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Ka... 233 2e-59 UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) ... 233 2e-59 UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 233 2e-59 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 233 2e-59 UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobact... 233 2e-59 UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algo... 233 2e-59 UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Pla... 233 2e-59 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 233 2e-59 UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids ... 233 2e-59 UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 ... 233 3e-59 UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bac... 232 3e-59 UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchi... 232 3e-59 UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosa... 232 3e-59 UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Pla... 232 3e-59 UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein... 232 3e-59 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 232 4e-59 UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intes... 232 4e-59 UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis R... 232 4e-59 UniRef50_A5KB15 ATP-dependent RNA helicase, putative n=1 Tax=Pla... 231 5e-59 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 231 5e-59 UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 231 6e-59 UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Ta... 231 6e-59 UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836... 231 6e-59 UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lambl... 231 6e-59 UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus K... 231 7e-59 UniRef50_C7DHL0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 231 7e-59 UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gamm... 231 7e-59 UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteob... 231 8e-59 UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 231 9e-59 UniRef50_Q9NVP1 ATP-dependent RNA helicase DDX18 n=124 Tax=cellu... 231 9e-59 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 231 1e-58 UniRef50_B6KVV0 ATP-dependent RNA helicase, putative n=5 Tax=Alv... 230 1e-58 UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii Re... 230 1e-58 UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marin... 230 1e-58 UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genom... 230 1e-58 UniRef50_C1G4K2 Pre-mRNA-processing ATP-dependent RNA helicase P... 230 1e-58 UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCM... 230 1e-58 UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Us... 230 1e-58 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 230 1e-58 UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=ce... 230 2e-58 UniRef50_C7PZF8 DEAD/DEAH box helicase domain protein n=35 Tax=A... 230 2e-58 UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kr... 230 2e-58 UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=... 230 2e-58 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 230 2e-58 UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyos... 230 2e-58 UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira ps... 230 2e-58 UniRef50_Q6BML1 Pre-mRNA-processing ATP-dependent RNA helicase P... 230 2e-58 UniRef50_Q0IH66 Ddx10 protein n=6 Tax=Euteleostomi RepID=Q0IH66_... 229 2e-58 UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acid... 229 2e-58 UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dicheloba... 229 2e-58 UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 229 2e-58 UniRef50_C5L4T1 ATP-dependent RNA helicase dbp-10, putative n=4 ... 229 2e-58 UniRef50_Q23WN3 Helicase conserved C-terminal domain containing ... 229 2e-58 UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE 229 3e-58 UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S... 229 3e-58 UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma fl... 229 3e-58 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 229 3e-58 UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas ... 229 3e-58 UniRef50_C4Q9A6 DEAD box ATP-dependent RNA helicase, putative n=... 229 3e-58 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 229 3e-58 UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box fa... 229 3e-58 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 229 3e-58 UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=To... 229 4e-58 UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII ... 229 4e-58 UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Te... 228 4e-58 UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornu... 228 4e-58 UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 T... 228 4e-58 UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Br... 228 5e-58 UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteure... 228 5e-58 UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 228 5e-58 UniRef50_D1H1T0 Whole genome shotgun sequence of line PN40024, s... 228 5e-58 UniRef50_A0K1H7 DEAD/DEAH box helicase domain protein n=27 Tax=A... 228 6e-58 UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostri... 228 6e-58 UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 T... 228 6e-58 UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lent... 228 6e-58 UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 228 6e-58 UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=St... 228 6e-58 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 228 7e-58 UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa ... 228 7e-58 UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing ... 228 8e-58 UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 228 8e-58 UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria g... 228 8e-58 UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Sacchar... 228 8e-58 UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME 227 9e-58 UniRef50_Q6CKI1 Pre-mRNA-processing ATP-dependent RNA helicase P... 227 9e-58 UniRef50_B6AAR3 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 227 9e-58 UniRef50_A7RHS2 Predicted protein n=1 Tax=Nematostella vectensis... 227 9e-58 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 227 1e-57 UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammap... 227 1e-57 UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus... 227 1e-57 UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmod... 227 1e-57 UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Vi... 227 1e-57 UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulf... 227 1e-57 UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ... 227 1e-57 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 227 1e-57 UniRef50_A8NE02 Putative uncharacterized protein n=1 Tax=Coprino... 226 2e-57 UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteri... 226 2e-57 UniRef50_UPI00006CA44F DEAD/DEAH box helicase family protein n=1... 226 2e-57 UniRef50_C1B4T7 ATP-dependent RNA helicase n=15 Tax=Actinomyceta... 226 2e-57 UniRef50_A1SQH8 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 226 2e-57 UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostrid... 226 2e-57 UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 226 2e-57 UniRef50_A4IDF5 DEAD box RNA helicase, putative n=6 Tax=Trypanos... 226 2e-57 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 226 2e-57 UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacter... 226 3e-57 UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplant... 226 3e-57 UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encepha... 226 3e-57 UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina lo... 226 3e-57 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 226 3e-57 UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium d... 226 3e-57 UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanoso... 226 3e-57 UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteob... 225 3e-57 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 225 3e-57 UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Para... 225 3e-57 UniRef50_C4M8U4 DEAD/DEAH box helicase, putative n=2 Tax=Entamoe... 225 4e-57 UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 225 4e-57 UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in... 225 4e-57 UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsu... 225 5e-57 UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=... 225 5e-57 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 225 5e-57 UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacte... 224 6e-57 UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 ... 224 6e-57 UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcu... 224 7e-57 UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospir... 224 7e-57 UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Ac... 224 7e-57 UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Cory... 224 7e-57 UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n... 224 7e-57 UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-... 224 7e-57 UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia ja... 224 7e-57 UniRef50_B7G0R3 Predicted protein n=1 Tax=Phaeodactylum tricornu... 224 8e-57 UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellula... 224 8e-57 UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 224 8e-57 UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micr... 224 9e-57 UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1... 224 1e-56 UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II p... 224 1e-56 UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 224 1e-56 UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Ve... 224 1e-56 UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmod... 224 1e-56 UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3... 224 1e-56 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 224 1e-56 UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Tryp... 224 1e-56 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 224 1e-56 UniRef50_D2UYJ4 ATP-dependent dead box RNA helicase n=1 Tax=Naeg... 224 1e-56 UniRef50_Q95XM9 Putative uncharacterized protein n=2 Tax=Caenorh... 223 2e-56 UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI... 223 2e-56 UniRef50_D0L6I3 DEAD/DEAH box helicase domain protein n=5 Tax=Ac... 223 2e-56 UniRef50_O96264 DEAD/DEAH box helicase, putative n=9 Tax=Eukaryo... 223 2e-56 UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 223 2e-56 UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2... 223 2e-56 UniRef50_Q54DV7 Putative uncharacterized protein n=1 Tax=Dictyos... 223 2e-56 UniRef50_B0T8G9 DEAD/DEAH box helicase domain protein n=52 Tax=A... 223 2e-56 UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Myco... 223 2e-56 UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilagi... 223 3e-56 UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteri... 222 3e-56 UniRef50_B5GG34 ATP-dependent RNA helicase n=14 Tax=Streptomyces... 222 3e-56 UniRef50_D2UXS9 DEAD-box ATP-dependent RNA helicase n=1 Tax=Naeg... 222 3e-56 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 222 3e-56 UniRef50_A2QAX7 ATP-dependent RNA helicase drs1 n=37 Tax=Fungi/M... 222 4e-56 UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinom... 222 4e-56 UniRef50_Q5SM34 ATP-dependent RNA helicase n=4 Tax=Thermus RepID... 222 4e-56 UniRef50_Q5KMS9 ATP-dependent RNA helicase DBP10 n=1 Tax=Filobas... 222 4e-56 UniRef50_B3L6I2 ATP-dependent RNA helicase, putative n=1 Tax=Pla... 222 4e-56 UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 222 4e-56 UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Te... 222 4e-56 UniRef50_B3L794 DEAD/DEAH box ATP dependent DNA helicase,putativ... 222 5e-56 UniRef50_Q13206 Probable ATP-dependent RNA helicase DDX10 n=35 T... 222 5e-56 UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Ta... 221 5e-56 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 221 5e-56 UniRef50_A8L2W4 DEAD/DEAH box helicase domain protein n=3 Tax=Fr... 221 7e-56 UniRef50_C4Q2N0 DEAD box ATP-dependent RNA helicase, putative n=... 221 7e-56 UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Ca... 221 8e-56 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 221 8e-56 UniRef50_D1XKC6 DEAD/DEAH box helicase domain protein n=2 Tax=St... 221 8e-56 UniRef50_A0M3C7 RhlE-like DEAD box family ATP-dependent RNA heli... 221 8e-56 UniRef50_A3BT52 DEAD-box ATP-dependent RNA helicase 29 n=6 Tax=V... 221 8e-56 UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA 221 9e-56 UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 221 9e-56 UniRef50_B8BT14 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 221 1e-55 UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricom... 221 1e-55 UniRef50_B4L0G8 GI13618 n=8 Tax=Eumetazoa RepID=B4L0G8_DROMO 221 1e-55 UniRef50_Q9UTP9 ATP-dependent RNA helicase dbp4 n=1 Tax=Schizosa... 221 1e-55 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 220 1e-55 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 220 1e-55 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 220 1e-55 UniRef50_A2QY39 ATP-dependent RNA helicase dhh1 n=35 Tax=Eukaryo... 220 1e-55 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 220 1e-55 UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 220 1e-55 UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelo... 220 1e-55 UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarin... 220 1e-55 UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pu... 220 1e-55 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 220 2e-55 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 220 2e-55 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 219 2e-55 UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacter... 219 2e-55 UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Para... 219 2e-55 UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Tox... 219 2e-55 UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=u... 219 2e-55 UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgrou... 219 2e-55 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 219 3e-55 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 219 3e-55 UniRef50_D0N7S6 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 219 3e-55 UniRef50_C1E0H4 Predicted protein (Fragment) n=2 Tax=Micromonas ... 219 3e-55 UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA 219 3e-55 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 219 3e-55 UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma ... 219 3e-55 UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum Rep... 219 3e-55 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 219 3e-55 UniRef50_C5YS52 Putative uncharacterized protein Sb08g003560 n=1... 219 3e-55 UniRef50_C4QLH4 DEAD box ATP-dependent RNA helicase, putative n=... 219 3e-55 UniRef50_Q0BUS0 ATP-dependent RNA helicase n=1 Tax=Granulibacter... 219 3e-55 UniRef50_Q8NHQ9 ATP-dependent RNA helicase DDX55 n=124 Tax=Fungi... 219 4e-55 UniRef50_Q9FNM7 DEAD-box ATP-dependent RNA helicase 26 n=12 Tax=... 219 4e-55 UniRef50_D1HIP4 Whole genome shotgun sequence of line PN40024, s... 218 4e-55 UniRef50_Q9SB89 DEAD-box ATP-dependent RNA helicase 27 n=1 Tax=A... 218 4e-55 UniRef50_D0N9A9 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 218 5e-55 UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Tr... 218 5e-55 UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 218 5e-55 UniRef50_A4S294 Predicted protein n=4 Tax=Viridiplantae RepID=A4... 218 5e-55 UniRef50_UPI000186E757 ATP-dependent RNA helicase DDX54, putativ... 218 5e-55 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 218 6e-55 UniRef50_B0CQW8 Predicted protein n=4 Tax=Agaricales RepID=B0CQW... 218 6e-55 UniRef50_Q5KIK3 ATP-dependent RNA helicase DRS1 n=2 Tax=Agaricom... 218 6e-55 UniRef50_Q4N0E9 ATP-dependent RNA helicase, putative n=2 Tax=The... 218 6e-55 UniRef50_A8N6Y1 Putative uncharacterized protein n=2 Tax=Agarica... 218 6e-55 UniRef50_C0S632 ATP-dependent RNA helicase dbp2 n=1 Tax=Paracocc... 218 7e-55 UniRef50_B8PIE5 Predicted protein n=3 Tax=Agaricomycetes RepID=B... 218 7e-55 UniRef50_A7AWS5 DEAD/DEAH box helicase and helicase conserved C-... 218 7e-55 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 218 7e-55 UniRef50_Q7RYZ7 ATP-dependent RNA helicase dbp-8 n=2 Tax=Sordari... 218 7e-55 UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 218 8e-55 UniRef50_A7S2R2 Predicted protein n=3 Tax=Eumetazoa RepID=A7S2R2... 217 1e-54 UniRef50_Q1Q4V2 Similar to ATP-independent RNA helicase DbpA n=1... 217 1e-54 UniRef50_A3PFY9 DEAD/DEAH box helicase domain protein n=28 Tax=c... 217 1e-54 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 217 1e-54 UniRef50_UPI000180CC42 PREDICTED: similar to ATP-dependent RNA h... 217 1e-54 UniRef50_B1YL87 DEAD/DEAH box helicase domain protein n=2 Tax=Ex... 217 1e-54 UniRef50_A9UXI8 Predicted protein n=1 Tax=Monosiga brevicollis R... 217 1e-54 UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 217 1e-54 UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii Re... 217 1e-54 UniRef50_A8NVZ5 RNA-dependent helicase, putative n=1 Tax=Brugia ... 217 1e-54 UniRef50_C5KHX3 ATP-dependent RNA helicase DRS1, putative n=3 Ta... 217 1e-54 UniRef50_UPI0001976677 Superfamily II DNA and RNA helicase n=1 T... 217 1e-54 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 217 1e-54 UniRef50_UPI0001791615 PREDICTED: similar to LOC495097 protein n... 217 1e-54 UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intes... 217 1e-54 UniRef50_C1E981 Predicted protein (Fragment) n=2 Tax=Micromonas ... 217 1e-54 UniRef50_Q4Q1N9 DEAD box RNA helicase, putative n=6 Tax=Trypanos... 217 2e-54 UniRef50_P39517 ATP-dependent RNA helicase DHH1 n=162 Tax=Eukary... 216 2e-54 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 216 2e-54 UniRef50_D2VE83 Dead box ATP-dependent RNA helicase n=1 Tax=Naeg... 216 2e-54 UniRef50_A8FF99 ATP-dependent RNA helicase n=71 Tax=Bacilli RepI... 216 2e-54 UniRef50_A2DFG9 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 216 2e-54 UniRef50_A1A121 Possible ATP-dependent RNA helicase n=16 Tax=Bif... 216 2e-54 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 216 2e-54 UniRef50_Q0CMM5 ATP-dependent RNA helicase dbp4 n=35 Tax=Dikarya... 216 2e-54 UniRef50_A8Q312 DEAD/DEAH box helicase family protein n=5 Tax=Ch... 216 2e-54 UniRef50_Q4U8S0 DEAD-box family helicase, putative n=2 Tax=Theil... 216 2e-54 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 216 2e-54 UniRef50_Q4P9P3 ATP-dependent RNA helicase DRS1 n=3 Tax=Fungi/Me... 216 2e-54 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 216 2e-54 UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetom... 216 3e-54 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 216 3e-54 UniRef50_Q5ZBH5 DEAD-box ATP-dependent RNA helicase 25 n=13 Tax=... 216 3e-54 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 216 3e-54 UniRef50_Q7A5D2 SA1387 protein n=64 Tax=Staphylococcaceae RepID=... 216 3e-54 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 216 3e-54 UniRef50_D0MSW7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 216 3e-54 UniRef50_P54475 DEAD-box ATP-dependent RNA helicase cshB n=22 Ta... 215 3e-54 UniRef50_B8NRZ0 ATP-dependent RNA helicase, putative n=4 Tax=Eur... 215 3e-54 UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp... 215 4e-54 UniRef50_A8R0I3 ATP-dependent RNA helicase (Fragment) n=7 Tax=St... 215 4e-54 UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly si... 215 4e-54 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 215 4e-54 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 215 4e-54 UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Nept... 215 5e-54 UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 215 5e-54 UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya... 215 5e-54 UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP 215 5e-54 UniRef50_Q0DBS1 Putative DEAD-box ATP-dependent RNA helicase 51 ... 215 5e-54 UniRef50_Q54Q94 Probable ATP-dependent RNA helicase ddx10 n=4 Ta... 215 6e-54 UniRef50_B7G381 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 215 6e-54 UniRef50_Q7S2N9 ATP-dependent RNA helicase has-1 n=65 Tax=Eukary... 215 6e-54 UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoid... 214 6e-54 UniRef50_A2D7F9 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 214 7e-54 UniRef50_UPI000196C3AC hypothetical protein CATMIT_02030 n=1 Tax... 214 7e-54 UniRef50_Q09719 ATP-dependent RNA helicase dbp10 n=1 Tax=Schizos... 214 7e-54 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 214 7e-54 UniRef50_C4JDV3 ATP-dependent RNA helicase DDX18 n=2 Tax=Fungi/M... 214 8e-54 UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So c... 214 1e-53 UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdema... 214 1e-53 UniRef50_B0WR51 DEAD box ATP-dependent RNA helicase n=1 Tax=Cule... 214 1e-53 UniRef50_Q57UA6 ATP-dependent DEAD/H RNA helicase, putative n=8 ... 214 1e-53 UniRef50_Q4N4B1 ATP-dependent RNA helicase, putative n=4 Tax=Euk... 214 1e-53 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 214 1e-53 UniRef50_C9LM75 ATP-dependent DNA helicase RecG n=1 Tax=Dialiste... 214 1e-53 UniRef50_C5KWB5 DEAD box ATP-dependent RNA helicase, putative n=... 214 1e-53 UniRef50_C1DZ78 Predicted protein (Fragment) n=2 Tax=Micromonas ... 214 1e-53 UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family... 214 1e-53 UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothe... 214 1e-53 UniRef50_UPI000180C1AE PREDICTED: similar to Ddx10 protein n=1 T... 213 1e-53 UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianu... 213 1e-53 UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Al... 213 1e-53 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 213 1e-53 UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 213 1e-53 UniRef50_Q4Q8D5 ATP-dependent RNA helicase, putative n=8 Tax=Try... 213 1e-53 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 213 1e-53 UniRef50_A8LRE5 DEAD/DEAH box helicase domain protein n=57 Tax=c... 213 2e-53 UniRef50_A5FFZ1 DEAD/DEAH box helicase domain protein n=6 Tax=Ba... 213 2e-53 UniRef50_D2SG81 DEAD/DEAH box helicase domain protein n=2 Tax=Fr... 213 2e-53 UniRef50_A2QRY2 ATP-dependent RNA helicase dbp10 n=20 Tax=Leotio... 213 2e-53 UniRef50_Q0AR94 DEAD/DEAH box helicase domain protein n=10 Tax=P... 213 2e-53 UniRef50_Q4P5U4 ATP-dependent RNA helicase DBP4 n=5 Tax=Fungi/Me... 213 2e-53 UniRef50_B3RR31 Putative uncharacterized protein n=1 Tax=Trichop... 213 2e-53 UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Ch... 213 2e-53 UniRef50_UPI000179E51F Probable ATP-dependent RNA helicase DDX43... 213 2e-53 UniRef50_C7QBM5 DEAD/DEAH box helicase domain protein n=16 Tax=A... 213 2e-53 UniRef50_C4PXM8 DEAD box ATP-dependent RNA helicase, putative n=... 213 2e-53 UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP 213 3e-53 UniRef50_C6XFC1 ATP-dependent RNA helicase protein n=1 Tax=Candi... 213 3e-53 UniRef50_B5DQ82 GA23405 n=4 Tax=Drosophila RepID=B5DQ82_DROPS 213 3e-53 UniRef50_Q9N478 Putative uncharacterized protein n=2 Tax=Caenorh... 212 3e-53 UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 212 3e-53 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 212 4e-53 UniRef50_Q9Y2R4 Probable ATP-dependent RNA helicase DDX52 n=33 T... 212 4e-53 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 212 4e-53 UniRef50_Q12Q06 DEAD/DEAH box helicase-like protein n=14 Tax=Gam... 212 4e-53 UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 212 4e-53 UniRef50_C0QQE8 ATP-dependent DNA helicase RecG n=2 Tax=Hydrogen... 212 4e-53 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 211 5e-53 UniRef50_Q9FLB0 DEAD-box ATP-dependent RNA helicase 18 n=16 Tax=... 211 5e-53 UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillone... 211 6e-53 UniRef50_P38719 ATP-dependent RNA helicase DBP8 n=25 Tax=Dikarya... 211 6e-53 UniRef50_A8IS61 Predicted protein (Fragment) n=1 Tax=Chlamydomon... 211 6e-53 UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichop... 211 6e-53 UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=... 211 6e-53 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 211 6e-53 UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=... 211 6e-53 UniRef50_A8MAW4 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 211 7e-53 UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosa... 211 7e-53 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 211 7e-53 UniRef50_C1E8E1 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 211 7e-53 UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=S... 211 8e-53 UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryot... 211 8e-53 UniRef50_D0MY83 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 211 8e-53 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 211 8e-53 UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=M... 211 9e-53 UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorh... 211 9e-53 UniRef50_Q8SY39 CG32344 n=9 Tax=Diptera RepID=Q8SY39_DROME 211 1e-52 UniRef50_A4RXF6 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 211 1e-52 UniRef50_B6KP61 ATP-dependent RNA helicase, putative n=4 Tax=Tox... 211 1e-52 UniRef50_Q238V7 Type III restriction enzyme, res subunit family ... 211 1e-52 UniRef50_Q39189 DEAD-box ATP-dependent RNA helicase 7 n=18 Tax=E... 211 1e-52 Sequences not found previously or not previously below threshold: >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 421 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 419/670 (62%), Positives = 537/670 (80%), Gaps = 2/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS V V PTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQIVEQVVR-PTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMS-PKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + ++ PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLRELFI 670 ++ +L+ + Sbjct: 665 EILRLKAQML 674 >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 441/671 (65%), Positives = 533/671 (79%), Gaps = 6/671 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP + Sbjct: 15 DSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPAL 74 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLAPNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQ Sbjct: 75 VLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQ 134 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY Sbjct: 135 MRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R+D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RF Sbjct: 195 TRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRF 254 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G Sbjct: 255 TVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMG 314 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE L Sbjct: 315 FCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENL 374 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G V V PTGL+DP Sbjct: 375 VGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEHQGQVVEQVVR-PTGLIDP 433 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDID Sbjct: 434 AIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDID 493 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 494 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 553 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AAR++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ Sbjct: 554 AARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDII---D 610 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + G R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 611 GVYGGDVERDG--RSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 409/668 (61%), Positives = 504/668 (75%), Gaps = 6/668 (0%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA ++ A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK--KVVDILA 598 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K V + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSVDEVRFIT 599 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + R + S + L+ + ELE M + A L+FE AA++ Sbjct: 600 RVADARVEREGEAPAPRR---LASESAPRSREELETLVGELEIAMREAAVALDFEAAARL 656 Query: 659 RDQLHQLR 666 RDQL ++R Sbjct: 657 RDQLFEVR 664 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 370/667 (55%), Positives = 486/667 (72%), Gaps = 11/667 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+ Sbjct: 12 DNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTL 71 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I++ Sbjct: 72 VIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDK 131 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ Sbjct: 132 LRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQF 191 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + Sbjct: 192 ERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHL 251 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 ++P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+G Sbjct: 252 VLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMG 311 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ L Sbjct: 312 YTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKML 371 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V+YGFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ V+Q++RPTGLLDP Sbjct: 372 VDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTETV-VEQIIRPTGLLDP 430 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI Sbjct: 431 EVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIK 490 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGR Sbjct: 491 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 550 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D++++ + Sbjct: 551 AARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITK 610 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A+ M+ K Q+ I +L+ M + A+ L+FE AAQIRD Sbjct: 611 TNEAEVAEDTVNY----------SAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDM 660 Query: 662 LHQLREL 668 + +L+ + Sbjct: 661 VLELKSM 667 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 377/697 (54%), Positives = 496/697 (71%), Gaps = 32/697 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+ Sbjct: 1 MSEFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ Sbjct: 61 VMAHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDM 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY Sbjct: 121 LRHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQY 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND RG FR++G+V++I PA D + +R+E F +E+E + L DP+TG+I++++ Sbjct: 181 ERNDLELVRGRFRLKGDVLEIVPAYEDRV-IRIEFFGDEIEAIRLIDPVTGEILNSLSAL 239 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +YP H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+G Sbjct: 240 RVYPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVG 299 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKET 360 YC+GIENYSR L+GR GEPP L DY D LLVVDESHVT+PQI GMY GDRARK+ Sbjct: 300 YCNGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQV 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG----------GDVV- 409 LV++GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S + Sbjct: 360 LVDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKF 419 Query: 410 ---------DQVVRPTGLLDPIIEVRPVATQVDDLLSEI-----RQRAAINERVLVTTLT 455 +QV+RPTG++DP + VRP A QVDDLL EI R + ERV+VTTLT Sbjct: 420 YVQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLT 479 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KRMAEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEV Sbjct: 480 KRMAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEV 539 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 SLVAILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q Sbjct: 540 SLVAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQ 599 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 +YN +H ITP+ + KK + + +A ++ + ++ + + Sbjct: 600 LQYNRQHNITPKPIVKKNSNAIL--SFLAISRKLNDPDLEKAFQAAQ---EIPLSEIPEL 654 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 I +LE M + A+NLEFEEAAQ+RD++ +LR+ + Sbjct: 655 IGQLELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLGH 691 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 353/674 (52%), Positives = 473/674 (70%), Gaps = 6/674 (0%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L R DV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL----AL 599 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + ++ V+ + +P+ + EL M + A +E+E+AA +R Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667 Query: 660 DQLHQLRELFIAAS 673 D++ +L A S Sbjct: 668 DEIARLMHGLEAQS 681 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 363/670 (54%), Positives = 475/670 (70%), Gaps = 6/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 + F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P + Sbjct: 6 EQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVL 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +++ NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE+ Sbjct: 66 LISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIER 125 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL AT ++L R DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L Sbjct: 126 LRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLH 185 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + R+D G FRVRG+VID+ P ++ ALRVE F +E+ERL LFD TG+I Sbjct: 186 FVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEY 244 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ EL Sbjct: 245 AFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKEL 304 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GYCSGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK Sbjct: 305 GYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTI 364 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLD Sbjct: 365 LVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLD 424 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P I VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I Sbjct: 425 PEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEI 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q G Sbjct: 485 KSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAG 544 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA-- 598 RAARNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L Sbjct: 545 RAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTT 604 Query: 599 --LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + + R +++ + + L EL M + A+++EFE+AA Sbjct: 605 GVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAA 664 Query: 657 QIRDQLHQLR 666 +RD++ +L Sbjct: 665 YLRDEVTKLE 674 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 374/693 (53%), Positives = 480/693 (69%), Gaps = 28/693 (4%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V Sbjct: 12 APFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLV 71 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 + NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++ Sbjct: 72 MVQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERL 131 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 R SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY Sbjct: 132 RHSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYV 191 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V Sbjct: 192 RNDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMY 250 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 I+P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GY Sbjct: 251 IFPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGY 310 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 C+GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLV Sbjct: 311 CNGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLV 370 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 E+GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V+Q++RPTGL+DP Sbjct: 371 EHGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQ 429 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT Sbjct: 430 VVVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDT 489 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 + R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRA Sbjct: 490 LRRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRA 549 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL----- 597 ARNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 550 ARNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLAR 609 Query: 598 --------ALGQNIAKTKAKGRGKSRPIVEPDN-------------VPMDMSPKALQQKI 636 G K+ R + D P + K L I Sbjct: 610 EDADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLI 669 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 670 EQMSQQMHQAAADLQFELAARLRDEVGELKKEL 702 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 339/666 (50%), Positives = 459/666 (68%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P SD LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYSDAT-LRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S V + PTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRRVVEQLIR-PTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I D + + +L M + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMD-----------NEALEKL---MWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 363/693 (52%), Positives = 478/693 (68%), Gaps = 32/693 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDEDG-LRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K+ + + Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEE-DLRIIDP 639 Query: 604 AKT-----------------------------KAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + K + + R P D KA + Sbjct: 640 LGDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASES 699 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 K+ +LE M + A L+FEEAA+IRD + L Sbjct: 700 KLADLERQMKEAAARLDFEEAARIRDIIRSLDA 732 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 343/668 (51%), Positives = 457/668 (68%), Gaps = 7/668 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+ Sbjct: 1 MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I + Sbjct: 61 VISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINR 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 121 MRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQY 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ Sbjct: 181 ERNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEEL 239 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+G Sbjct: 240 TVYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMG 299 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YC GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L Sbjct: 300 YCHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNL 359 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPTGLLD 420 +++GFRLP A DNRPLK EFEAL Q +++SAT E++ +V+Q++RPTGLLD Sbjct: 360 IDFGFRLPCARDNRPLKDSEFEALLNQAVFISAT--PGVKERTQSVQIVEQLIRPTGLLD 417 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I Sbjct: 418 PCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEI 477 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +T+ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IG Sbjct: 478 ETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIG 537 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Sbjct: 538 RAARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVRE 597 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 Q + K A+ + +V A ++ + L M A+ L FEEAA IRD Sbjct: 598 QEVKKDAARVQVAPLLRAADADVRTH---AARKKMVQALRLHMKVCARELRFEEAALIRD 654 Query: 661 QLHQLREL 668 ++ QL+ Sbjct: 655 KILQLQRQ 662 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 371/682 (54%), Positives = 483/682 (70%), Gaps = 15/682 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT+ Sbjct: 33 MNKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTL 92 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L+ NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I++ Sbjct: 93 ILSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDK 152 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL+AT A+L R DVVVV+SVS IYG+G+P + ++ + G + LRRL + Sbjct: 153 LRLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSL 212 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ Sbjct: 213 YVRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDA 271 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + IYP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM EL Sbjct: 272 YKIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMREL 331 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK Sbjct: 332 GHCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTN 391 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLD Sbjct: 392 LVEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLD 451 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIEVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+ Sbjct: 452 PIIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDV 511 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 DT+ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT G Sbjct: 512 DTLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAG 571 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K + G Sbjct: 572 RAARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAG 631 Query: 601 QNIA-----KTKAKGRGKSRPIVE--------PDNVPMDMSPKALQQKIHELEGLMMQHA 647 + RP VE D + MS L++ I + LM + A Sbjct: 632 TEGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAA 691 Query: 648 QNLEFEEAAQIRDQLHQLRELF 669 + L+F EAAQ RD++ ++ EL Sbjct: 692 KKLDFIEAAQYRDEVLKMEELL 713 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 352/698 (50%), Positives = 473/698 (67%), Gaps = 28/698 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 +PF++ + F P GDQP AI L +G+ +D L +QTLLGVTGSGKTFT+AN+I Q+ T Sbjct: 38 QQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTT 97 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E Sbjct: 98 LIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVE 157 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++Q Sbjct: 158 KLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQ 217 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 218 YDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPIRVSFFGDEIEMIAEFDEVTGDTLSQYDA 276 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ + Sbjct: 277 LPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETM 336 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK T Sbjct: 337 GFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKIT 396 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S V+QV+RPTGLLD Sbjct: 397 LVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQNV-VEQVIRPTGLLD 455 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 456 PRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDT 515 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+G Sbjct: 516 ATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMG 575 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI---- 596 RAARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ Sbjct: 576 RAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFI 635 Query: 597 ---------LALGQNIAKTKAKGRGKSRPIVEPDNVPMD------------MSPKALQQK 635 + T + + +P + M + + + Sbjct: 636 QAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKI 695 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L+ M+ + +++FE AA++RDQ+ +++ + S Sbjct: 696 LGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLS 733 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 314/669 (46%), Positives = 448/669 (66%), Gaps = 11/669 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 S+ E D M + K + Q + + M Q A+ +FEEA +IRD Sbjct: 601 -------ILSEDHSKYYGEKDLSQMKHNKKFIDQMVRK----MTQLAKANKFEEAIEIRD 649 Query: 661 QLHQLRELF 669 L ++ Sbjct: 650 YLIEIGIEL 658 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 343/720 (47%), Positives = 461/720 (64%), Gaps = 68/720 (9%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+ Sbjct: 1 MSSFELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V++ NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ +++ Sbjct: 61 VISHNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDR 120 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + L+A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + Sbjct: 121 LSLNAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLF 180 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + + Sbjct: 181 ERQDFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSY 240 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T +P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG Sbjct: 241 TFFPAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELG 300 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK L Sbjct: 301 FCKGIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNIL 360 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN--------------YELEKSGGD 407 VE+GFRLPSALDNRPLKF EF Q +Y SATPG + Sbjct: 361 VEHGFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSG 420 Query: 408 VV-----------DQVVRPTGL------------------------------LDPIIEVR 426 L+P I +R Sbjct: 421 EKAPEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIR 480 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P+ Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+ Sbjct: 481 PLKGQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERV 540 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 EI+R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++ Sbjct: 541 EILRALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHL 600 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 NG+ +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ K Sbjct: 601 NGECVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRSEQ-------GQLKL 653 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 A+ +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 654 YAEDDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 323/672 (48%), Positives = 429/672 (63%), Gaps = 25/672 (3%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADG---LLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ + LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-- 597 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + L Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHEDLSG 604 Query: 598 --ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + + QKI EL+ M + A+ E+E A Sbjct: 605 HDYKQNAELYAAKASKNEY------------------NQKIKELKKKMEEAAKKREYEVA 646 Query: 656 AQIRDQLHQLRE 667 AQ RD + +L Sbjct: 647 AQYRDMIVELEA 658 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 228/673 (33%), Gaps = 64/673 (9%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 L+ Q + L + G Q + G++ S +T +A + L P Sbjct: 1 MAEKALSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLC 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ + A ++ +++ P+ V P+++ + + + + Sbjct: 61 VVTHSIQQARRIAEDLQVLLPDEEVLS-------------FPATEVMPYEVLTSSHELLA 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 RL + R V VV ++ A+ P + + L VG ++ I RL L Sbjct: 108 QRLDVLSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y R G + +RG ++D++P + + R+E FD+E++ + LFD T + R Sbjct: 168 YQRTPMVEAPGQYSLRGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDR 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P + E + Q E+++E A R+ LL++ RL + LE ++E Sbjct: 227 YAAGPAREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEG 286 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + G+E + F +LF YL + ++ DE + Sbjct: 287 IWVEGLEQFQNFFYPDQV-----SLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVH 341 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G LP+ + + E LA + A Sbjct: 342 LLEAGSVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKKIE-----------RVTVEDTI 390 Query: 421 PI--IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + P ++D L E++ VL+ + + + + L ++G + + Sbjct: 391 QFNAKNMHPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG 450 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 I +L G V V L G ++ + LV I D + G + Sbjct: 451 ---------IDAELHPGTVAVGV--GQLEAGFELVQARLVLITDLEIFGREKRP-----R 494 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 R + + + D + +Y + G++K + I Sbjct: 495 KPRKSAREGQRIDSFVDLALGDYVVHV------NHGIGRYMGVEKLEVGGVHKDYLVIRY 548 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 G++ P + + + + + K++ L G + + ++ Sbjct: 549 AGEDRL---------YVPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVREL 599 Query: 659 RDQLHQLRELFIA 671 L +L + Sbjct: 600 AGDLLKLYAARES 612 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 76/480 (15%), Positives = 144/480 (30%), Gaps = 45/480 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + E F+E D + + I+ Sbjct: 617 AYSADTPWQKE-FEEAFPYEETPDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIR 675 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + Q E + GY ++ SRF S + Sbjct: 676 AAFKAVQDGKQVAILVPTTILAQQHYNTFRERFS--GYPVRVDVLSRFRSPKEQKAS--- 730 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L + + +V +H + + + + Sbjct: 731 -LEGLKSGEVDIVIGTHRLVSNDVSFKDLGLLIIDEE--------QRFGVAHKEKIKHLK 781 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRA 443 + +SATP L S + D + T D V +L+ +R+ Sbjct: 782 ENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRREL 841 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 +V + + L R + H + + +++ D GE+D+LV Sbjct: 842 NRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILV 901 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P V+ + + AD G + L Q GR R+ + + Sbjct: 902 CTTIIETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNRLAYAFFTYRKD--- 954 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + E +R + E G G + D+ G + + Sbjct: 955 -KVLTEVAEKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHG-------QMA 1003 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQL--RELFIAA 672 +V D+ + L++ I EL+G + A F + D L ++ + +AA Sbjct: 1004 SVGFDLYCRLLEEAIQELKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQFYKRLLAA 1063 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 314 bits (804), Expect = 9e-84, Method: Composition-based stats. Identities = 120/666 (18%), Positives = 232/666 (34%), Gaps = 66/666 (9%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 N++ E + GL G L G+ K +A ++ + P +V+ P Sbjct: 3 NNSILQIIRDSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGS 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A +L +++ F+P ++ Y+P S+ + + + + RL Sbjct: 62 EEAQRLAADIESFWPGEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVL 108 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ R ++V V + P L+ L L VG IID+ A+L++L L Y R + Sbjct: 109 TNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEV 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G VRG +IDIFP +++ +R+ELF +E++ L FDP++ + V+ + + P Sbjct: 169 VEAPGQLAVRGGIIDIFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPA 227 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR-LTQRTQFDLEMMNELGYCSG 305 + P + +E +K E + L + + R L R Q + M+ + G Sbjct: 228 QEVL-PPPDLGPGLETLKAEFSQTYATLR--QRQPQAARELKDRVQELIAMLEAGSWPGG 284 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 F R TLF+Y LLV+D+ + ++ + ++ G Sbjct: 285 SSQLQPFFYPR-----QATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAG 339 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LPS + + + G+ I Sbjct: 340 LALPSQGQAYLDSADLERLWQRYQRLYFSLLPRRVPG------SNP-RPAVGISAQTI-- 390 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++ ++ E+ + R+++ L + L E G R Sbjct: 391 PAFQGKLGLVVEELTRWRREGYRIILMVADPNRVVALRQALAEQGIEALT-----HPEAR 445 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + G +V++ LR+G PE+ L I D + G +R + R Sbjct: 446 DTL------GRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRRP-----RRVKTPRE 494 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + + D + R + G+ K + I G++ Sbjct: 495 GSKIS-SFTDLKEGDYVVHVHHGIGRYLG------LQQLDVGGVKKDYLLIQYAGKDRL- 546 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + V + + +++ L G ++ E ++ +L L Sbjct: 547 --------YVPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQELLDL 598 Query: 666 RELFIA 671 A Sbjct: 599 YARREA 604 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 62/488 (12%), Positives = 131/488 (26%), Gaps = 45/488 (9%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF------- 227 RL L ++ R V+ ++ + A+ F + F Sbjct: 568 RLYRLGGNEWNKVKSRVQEAVQEMAQELLDLYARREAIPGHAFGPDTPWQREFEEAFPYT 627 Query: 228 ---DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 D L P + + ++ A + + Sbjct: 628 ETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTI 687 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q + + + + + L + +V +H + Sbjct: 688 LAQQHYETFKARFAPFPVKIAVLSRFCSPREQKVV------VEALKRGEVDIVIGTHRLL 741 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + + ++ATP L S Sbjct: 742 SSDVNFKNLGLVIIDEE--------QRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMS 793 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLT 463 V D + T D V +L+ IR+ +V + + + Sbjct: 794 LAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFA 853 Query: 464 EYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 ++++ RV H + E ++ D G +DVLV ++ GLD+ + + + Sbjct: 854 YHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVD 913 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 ++D G + L Q GR R A Y + I +R + Sbjct: 914 ESDNFGLAQ----LYQLRGRVGRTNR-LAYAYFTYRPDKVLGEI---AEKRLAAIREFTA 965 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G + V D+ + L++ + +L+ Sbjct: 966 FG---SGYKIALRDLQIRGAGNFLGPEQHG-------HMVAVGFDLYCQLLEEAVRKLKE 1015 Query: 642 LMMQHAQN 649 + Sbjct: 1016 QRGEGVPR 1023 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 273/597 (45%), Positives = 372/597 (62%), Gaps = 27/597 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ-RAILRRLAELQYAR 183 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + + Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 184 N--DQAFQRGTFRVRGE------VIDIFPAESDDIALRVEL----FDEEVERL--SLFDP 229 D F+RGT++ ++++P + +R+E + + Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEFASVGDGAVKDGMVVRAIQE 239 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + + I+P H+VT +R+ QA I+EEL R + LL K +E RL QR Sbjct: 240 GTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRLQQR 299 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG---LLVVDESHVTIPQ 346 D+ MM E G+CSG ENYSR L+GR G PP TL DY+ + LL+VDESHVT+PQ Sbjct: 300 VLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVTLPQ 359 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL K+ Sbjct: 360 LKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGKAEY 419 Query: 407 ----DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 ++ DP IEVR Q+D+LL+E+R R +R LV TLTKR AEDL Sbjct: 420 PPVEMMIRPTYVC----DPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDL 475 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + YL EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L+ Sbjct: 476 SSYLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLN 535 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 AD EGFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN Sbjct: 536 ADSEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYN 592 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 62/474 (13%), Positives = 128/474 (27%), Gaps = 80/474 (16%) Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR----------------GT 192 P + L D + + + +N Sbjct: 26 LPPKKFGNPGERLRK-KKWDLSELPK------FEKNFYVEHPEVARLTPYEVDELRRKKE 78 Query: 193 FRVRGEVIDIFPAE--------------------SDDIALRVELFDEEVERLSLFDPLTG 232 VRG + P ++ ++ + F + + Sbjct: 79 ITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL-SGRDMVGIAQ 137 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + H + L L + ++ Sbjct: 138 TGSGKTLAYLLPAIVHINHQPYLERG---DGPICLVLAPTRELAQQVQQVADDYGKCSR- 193 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 G G + P L D+L + + +++ + + Sbjct: 194 LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR--- 250 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 L + + K + QT+ SAT + + + D Sbjct: 251 --------------MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYT 296 Query: 413 VRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLT 463 G L+ I++V + + L+ + + A E + ++ TKR +DLT Sbjct: 297 QINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLT 356 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + G +H D ER ++ + R G+ +L+ ++ GLD+ +V V D Sbjct: 357 RRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDY 416 Query: 524 DKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 S + IGR AR+ G A + A+ + + + Sbjct: 417 PN-----SSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 61/478 (12%), Positives = 138/478 (28%), Gaps = 53/478 (11%) Query: 181 YARNDQAFQRG-----------TFRVRGEVIDIFPAE--SDDIALRVELFDEEVERLSLF 227 Y R+ + RG V+D+ + ++ A++ + + + Sbjct: 76 YRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDM 134 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + + + H +E + E + +++ Sbjct: 135 VGVAQTGSGKTLSYLLPAIVHI-----NHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 189 Query: 288 QRTQ-FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 G G + P L D+L + +++ + + Sbjct: 190 YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 249 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 L + + K + QT+ SAT + + Sbjct: 250 ADR-----------------MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAED 292 Query: 407 DVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKR 457 + D + G L+ I++V + + L+ + + + E + +V TKR Sbjct: 293 FLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKR 352 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 ++LT + G +H D ER ++ + + G+ +L+ ++ GLD+ +V Sbjct: 353 RCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKF 412 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D S I IGR AR+ G A + + R + Sbjct: 413 VINYDYPN-----SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAI 467 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + + + + + G+ L++ Sbjct: 468 N-PKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKR 524 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 64/427 (14%), Positives = 118/427 (27%), Gaps = 26/427 (6%) Query: 217 FDEEVERL---SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR-- 271 F + V F T + P V + Sbjct: 86 FPDYVMSEINNQGFKLPTPIQAQSWPVGLSG--RDVVGIAQTGSGKTLAYVLPSIIHIKN 143 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L + L T+ + ++ + G + G P L Sbjct: 144 QPPLRHGDGPIALILCP-TRELAQQVHSVSTTFGRLARI-NCACIYGGSPKGPQLRELSR 201 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + V + + +R L E L + + + QT+ Sbjct: 202 GVEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPRQTV 261 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQR 442 SAT + + D V G + I+EV + D L + Sbjct: 262 MWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLLSDI 321 Query: 443 AAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +E+ +V TK+ ++ L+ L G V +H D ER ++ + R G VL+ Sbjct: 322 LRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIPVLI 381 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+ +V LV D + + IGR AR+ G A + Sbjct: 382 ATDVAARGLDISDVKLVINYDFPN-----NSEDYVHRIGRTARSGKTGTAYTFFTASNIR 436 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD-ILALGQNIAKTKAKGRGKSRPIVE 619 + + R + + G++ + + P + Sbjct: 437 QSPNLIALLREANQPINPDLIQLGDAARAEMAQKHRGKMRGRDRFYNRDRNASNRYPYAK 496 Query: 620 PDNVPMD 626 Sbjct: 497 SKLSGSY 503 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 59/418 (14%), Positives = 117/418 (27%), Gaps = 37/418 (8%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 F+ G F + A++ + + + + + Sbjct: 155 PSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWP-IAMSGRDLVGVAQTGSGKTLAYVL 213 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 H + L L T G Sbjct: 214 PAVVHINNQPRLERG---DGPIALVLAPTRELAQQIQQVAIEFGSNTH-VRNTCIFGGAP 269 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G + P L D+L + +++ + + Sbjct: 270 KGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADR-------------- 315 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--- 420 L + + K + Q + SAT + + + + + G L Sbjct: 316 ---MLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSA 372 Query: 421 -----PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVR 474 I++V ++ L+ + +A NE + ++ TK+ +++T + G R Sbjct: 373 NHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRAC 432 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +H D ER ++ R G +LV ++ GLD+ +V V D + Sbjct: 433 AIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYP-----SNSED 487 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + IGR R+ N G A + A + + R + + G NK Sbjct: 488 YVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNK 545 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 112/663 (16%), Positives = 241/663 (36%), Gaps = 69/663 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F ++ + I+ +EE L+ G+T S K ++ + +V+AP++ A Sbjct: 2 FTRQIEELKEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++ F + + P + K + ++ + RL K + Sbjct: 62 RKIYEDLYSF--------------NFGNASLFPKREALFYKIDAASQEVVSQRLQVIKKL 107 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E VV S+ A G P DL+ K +G+ ++ +++ L + Y R Sbjct: 108 SEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEG 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+F +++ R+ELFD+E++ + FD +T + + I + I+P T + Sbjct: 168 KGQFSVRGGIIDVFSP-TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEF 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E I + + + L + + ++ + ++L Q+ + +E + E I Sbjct: 227 IAGAEHIKKGISAVSNYLNSYLSKIKKSKSGI-AEKLQQKFEEIMEEITESKRVENIYEL 285 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 286 IDYFYDDVY-----SIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 Query: 370 SA--LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 L + + I + EL+ + + Sbjct: 341 EQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQ--------PQTI-VNFVSRSMHH-- 389 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +D L+ +++ +VL+ + + A L + L+ + + Sbjct: 390 FHGNMDILVDDLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KD 440 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 D++ G V++ + +G + + I D + G + R + N Sbjct: 441 SEYDIQKG--QVVIYPASVSKGFEYVDAKFAVISDGEIFGQTK-------RRKRTVKIKN 491 Query: 548 GKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 I + + S + + E I G+ + + I+ G + Sbjct: 492 ADKIKSFTELEIGSYVVHVNYGIGKYEGI------EKIKVDGIVRDYLKIIYAGGDTL-- 543 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 P+ + D V + P K+++L G A+ + + L QL Sbjct: 544 -------FVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLY 596 Query: 667 ELF 669 Sbjct: 597 AKR 599 Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 47/202 (23%), Gaps = 22/202 (10%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + + L +L YA+ A S D + E F+E+ D Sbjct: 586 EDLAKDLIQL-YAKRQMVKGH--------------AFSPDTPWQKE-FEEQFPYEETEDQ 629 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 L P + + ++ A Q Sbjct: 630 LRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQH 689 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 +E E IE SRF + + + L + ++ +H + Sbjct: 690 YTNFIERFKEF--PVKIEMLSRFRTP----KEQSKIIKELAEGNIDIIVGTHRLLQNDIK 743 Query: 350 MYRGDRARKETLVEYGFRLPSA 371 + +G Sbjct: 744 FKDLGLLIIDEEQRFGVVHKEK 765 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 108/384 (28%), Gaps = 16/384 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQ-AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 P + L+ + + + T+ Sbjct: 26 EEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTREL 85 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYR 352 E + G+P L +V+ I I Sbjct: 86 AIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGTVQVVIGTPGRVIDHIKRGTLH 145 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D L E L QTI SAT L+ + D Sbjct: 146 LDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQPILDITRRFQRDPQ 205 Query: 413 VRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLE 467 + P IE + + D L + + E LV TKR +DL ++ Sbjct: 206 FVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVFCNTKRTVDDLMSRMQ 265 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G V LH D+ +R ++ R G DVL+ ++ G+D+ +V +V D Sbjct: 266 ARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGIDVDDVDIVFNYDVP--- 322 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH---G 583 + + IGR AR GK++ + + I + + + Sbjct: 323 --QDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYAKIQIAKTPLPTLDDVAE 380 Query: 584 ITPQGLNKKVVDILALGQNIAKTK 607 + Q KV DI+A G Sbjct: 381 MKQQIFLDKVRDIMAAGNLELYLP 404 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 110/668 (16%), Positives = 239/668 (35%), Gaps = 67/668 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 F + + +E+ ++ + G S K I + + +V+ N Sbjct: 2 KTFTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDI 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++Y ++K + + P+ D I + R+ K Sbjct: 61 KAKEIYEDLKLY---------------DRNVYLYPAKDIIFYSADIHGNAIVRERMRILK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +LER+ + VVA++ P D ++ + I+ + +L L Y R Q Sbjct: 106 NLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + IYP + Sbjct: 166 ENPGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPAS 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E + + ++ E L K E R+ Q + E + L ++ Sbjct: 225 EIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 +Y RF + + FDY D ++ DE + + ++ +E G+ Sbjct: 285 SYIRFFYDKTC-----SFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LPS +D E L+ + + +T + ++ + +V ++ Sbjct: 340 ILPSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAA---KKKVDITVKSVN------ 390 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + L+ +++ RV++ + ++ A L + L ++ Y + V+R+ Sbjct: 391 PYNNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIY----SEDVDRI 446 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + +++V + G + P + LV I ++D G + ++ + Sbjct: 447 PV-------KGEIVVMHGSVHRGFEYPLIKLVIISESDIFGAEKKKKKKK-------PSY 492 Query: 547 NGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 GK I + D Y I ++K + + G + Sbjct: 493 EGKQIQSFTDLNIGDYV------VHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVL- 545 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 D + A + K+++L + ++ + +I +L +L Sbjct: 546 --------YILATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVEL 597 Query: 666 RELFIAAS 673 A + Sbjct: 598 YATRQAKA 605 Score = 218 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 64/433 (14%), Positives = 124/433 (28%), Gaps = 41/433 (9%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + + + + I+ A Sbjct: 619 FEEMFPYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQV 678 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL---FDYLPADG 333 + Q + M + + P + L Sbjct: 679 VFLVPTTILAQQHYNTFSQRMMNFPISVDMLCRF---------KTPAQQKKTLENLKKGQ 729 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 L ++ +H + + + + + + ++ Sbjct: 730 LDILIGTHRVLSKDIQFKNLGLLIIDEE--------QRFGVTHKEKIKQMKGDIDVLTLT 781 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVT 452 ATP L S + D V +D + V D+++ I + A +V Sbjct: 782 ATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYV 841 Query: 453 TLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 +++T + V + H + + +I+ + GE DVLV ++ GL Sbjct: 842 HNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGL 901 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 D+ V+ + I +AD+ G + L Q GR R+ K K + E Sbjct: 902 DISNVNTMIIDNADQLGLSQ----LYQLRGRVGRSNRTSFAFLMYKRD----KLLKEVAE 953 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +R + K E G G + D+ G + + V D+ K Sbjct: 954 KRLQAIKEFTELG---SGFKIAMRDLEIRGAGNLLGAQQSG-------HMEAVGYDLYCK 1003 Query: 631 ALQQKIHELEGLM 643 L + L+G + Sbjct: 1004 MLNDAVKGLKGEI 1016 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 123/665 (18%), Positives = 240/665 (36%), Gaps = 73/665 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + E ++ G+ T+ G + S K + L + +A N+ A Sbjct: 11 LIEPLFEIKEYTNVLENIKRGI-PTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQA 69 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +++ ++ FF ++AV + PS + + + + R++A + Sbjct: 70 RKMFEDVSFFFGKDAV--------------FFPSKEIMLHDVEAKSYDSIYERINALYRI 115 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + +V S A+ L+ + ++++ +G ID ++L + Y R Sbjct: 116 VNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEG 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 + F VRG ++DIFP +D A+R+ELFD+EV+ + FD +T + V + TI P Sbjct: 176 KSQFAVRGGIVDIFPVNAD-TAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPAREL 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + P ME+I +L + K + N Q+L + D+E ++ Y +G++ Y Sbjct: 235 IYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRY 294 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 E P + DY+ ++ L+ VDE +I + ++ +E G L Sbjct: 295 IP-----YIIEKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLA 349 Query: 370 SALD--NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR- 426 + D + T+Y + P + E + I+ Sbjct: 350 GSFDIFFDCNYLWDKVKKCKNTLYFTTLPSDDGQE--------------EKRENIVSKLL 395 Query: 427 -PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++ L +I RV++ + TK E L E L YL Sbjct: 396 NSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL--------- 446 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E RD++ GE V++ +L G + P + V + + G + +++ + Sbjct: 447 EEPHRDIQPGE--VVITHGVLNRGFEYPGIGFVVVSGKELFG--QEKKTRRHK------S 496 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 GK I KY + + + K + I Sbjct: 497 AKGKKISVFT-----DLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQY------- 544 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + G P + D + + + K+ +L G + E ++ +L L Sbjct: 545 --SDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELINL 602 Query: 666 RELFI 670 Sbjct: 603 YAQRE 607 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 125/428 (29%), Gaps = 35/428 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ D L + P + + ++ A Sbjct: 624 FEDLFPYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQV 683 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q E M + + + R + + A + V Sbjct: 684 AYLVPTTVLAQQHYNTFKERMKDFPITVEVLSRFRTQ------AEQKRILKDVKAGMVDV 737 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + E + + + ++ATP Sbjct: 738 LIGTHRLLQKDVCFKDLGLL---VIDE-----EQRFGVTHKEKIKRMKTNIDVLTLTATP 789 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLT 455 L S + D + V + + I + + +V Sbjct: 790 IPRTLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNR 849 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 R +++ RV H ++ E I+ GE+D+LV ++ GLDMP Sbjct: 850 VRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMP 909 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + + DADK G + L Q GR R+ A Y K + E +R Sbjct: 910 NVNTIIVEDADKMGLAQ----LYQLRGRVGRSNR-LAYAYIT---YKKDKVLSEIAEKRL 961 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K E G G + D+ G + D+V DM K L Sbjct: 962 QAIKEFTEFG---SGFKIAMRDLQLRGAGNLLGPQQHG-------HIDSVGYDMYCKLLA 1011 Query: 634 QKIHELEG 641 + ++EL G Sbjct: 1012 EAVNELRG 1019 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 63/412 (15%), Positives = 123/412 (29%), Gaps = 40/412 (9%) Query: 181 YARNDQAFQRGTFRVRGEVID--IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y+ + ++ + + + + ++ +E Sbjct: 177 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKT 235 Query: 239 PRFTIYPKTHYVTPRERIVQ-AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F I H V + + + L L L E Q+ + T + Sbjct: 236 AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP-LRSCV 294 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + + + P L D++ + + + + Sbjct: 295 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKI-----------------SLEFCK 337 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEA----LAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E L + + K E + QT+ SAT + + + + + Sbjct: 338 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIF 397 Query: 414 RPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I +++ L I A N +L+ TK+ A+ L +L Sbjct: 398 MTVGRVGSTSDSIKQEIIYMTDVEKLNYL-KNIFNTTAPNTLILIFVETKKGADSLARFL 456 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G V +H D VER + R G+ +LV + GLD+P V V D Sbjct: 457 LSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLP-- 514 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R +G+A + ++A + + + + Sbjct: 515 ---SDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEANQIVP 563 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 106/363 (29%), Gaps = 21/363 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F T + P V + K + N ++ + Sbjct: 42 FSAPTPIQAQSWPVALQS--RDIVAIAKTGSGKTLGYLIPGFIHLKRIRNNPQMGPTVLV 99 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + G + + G P L +VV Sbjct: 100 LSPTRELATQIQDEAVKFGRSSR-LSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLNDI 158 Query: 347 IG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + L E L + + K + QT+ +AT + + Sbjct: 159 LEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAA 218 Query: 406 GDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 +V+ V G +D +EV P + L +I + ++++ TK Sbjct: 219 DLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRL-EQILRSQEPGSKIIIFCSTK 277 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 +M + L L +H D ER ++ R G VLV ++ GLD+ ++ Sbjct: 278 KMCDQLARNLTRP-FGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIR 336 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 +V D + IGR R G A + + A + + ++ Sbjct: 337 VVINYDFPT-----GVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQR 391 Query: 576 QKY 578 Sbjct: 392 VPP 394 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 64/450 (14%), Positives = 132/450 (29%), Gaps = 31/450 (6%) Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR----VRGEVIDIF 203 P + L D + + + Y N + + R I + Sbjct: 29 PPPPKKFGNPGDRLRK-KKWDLDQLP-KFEKNFYNENPEVHHMSQYDVEEYRRKREITVR 86 Query: 204 PAESDDIAL----RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 + + + + ++ L + + V + Sbjct: 87 GSGC-PKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGK 145 Query: 260 MEEIKEELAARRK--VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 LE + T+ + + ++ + G + + + Sbjct: 146 TLAYLLPAIVHINHQPYLERGDGPIC-LVLAPTRELAQQVQQVAFDYGKSSRIKS-TCVY 203 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRP 376 G P L + + I + G R L E L + + Sbjct: 204 GGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQI 263 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPV 428 K + QT+ SAT + + + D V G L+ I++V Sbjct: 264 RKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCME 323 Query: 429 ATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + + L+ + + A E + ++ TK+ ++LT + G +H D ER Sbjct: 324 NEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDW 383 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V 546 ++ + R G+ +L+ ++ GLD+ +V V D S + IGR AR+ Sbjct: 384 VLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPN-----SSEDYVHRIGRTARSTN 438 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQ 576 G A + A+ + + Sbjct: 439 KGTAYTFFTPGNLRQARDLVRVLEEARQAI 468 >UniRef50_C4LZM8 DEAD/DEAH box helicase, putative n=4 Tax=Entamoeba RepID=C4LZM8_ENTHI Length = 578 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 68/500 (13%), Positives = 142/500 (28%), Gaps = 71/500 (14%) Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA------IYGLGDPDLYLKMMLHLTV 163 +D+ + + R + E R+ ++ +VS + G P ++ + + Sbjct: 79 YRDSREDPKRLEKRNQWLEETKEEREKLIDVTVSYENLEIEVTGKDLPKDTIETFYDIDL 138 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G +D + + + P + I + ++ Sbjct: 139 GEELD-----HNIFKAGFYHP------------------MPVQKATIPIVLD-------- 167 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE-----RIVQAMEEIKEELAARRKVLLENN 278 F + + + L L Sbjct: 168 KRDLMSCAQTGSGKTAAFLFPIISDILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQ 227 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 E R T+ T + G S + P L + + + Sbjct: 228 IYEEAVRFTEDTP-IRSVCVYGGSDSYTQIQEMGKGCDILVATPGRLLYFTEKKIVSLSS 286 Query: 339 ESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 ++ + M + + E P QT+ SAT Sbjct: 287 VRYLIFDEADRMLDMGFEPQIREICEDNEMPPVG--------------KRQTLMFSATFP 332 Query: 398 NYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + D V G + II + + +L + + A ++ + Sbjct: 333 KQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEEIKQEAILDVLGEFAGKGQKTV 392 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKR A+ L YL +HG +V +H D +R ++ + +LV ++ GL Sbjct: 393 IFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDFSLKRFKENVIQLLVATDVASRGL 452 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+P++ +V D S + +GR R G AI + ++ T ++ + Sbjct: 453 DIPDIEVVINYDMPN-----EIESYVHRVGRTGRAGKKGTAITFINEKTQNLIPPLVSLL 507 Query: 570 RRREKQQKYNEEHGITPQGL 589 ++ E Sbjct: 508 EEAKQTIPDWLEEKAQEYRK 527 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 55/372 (14%), Positives = 108/372 (29%), Gaps = 19/372 (5%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E + L + + V + + + Sbjct: 444 PEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRND 503 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++ + T+ + + G + + G P L +VV Sbjct: 504 SRNGPTVLILAPTRELATQIQDEALRFGRSSRI-SCTCLYGGAPKGPQLKELERGADIVV 562 Query: 338 DESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + M + L E L + + K QT+ +AT Sbjct: 563 ATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATW 622 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINE 447 + + +V+ V G +D +EV P + L +I + Sbjct: 623 PKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRL-EQILRSQERGS 681 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V++ TKR+ + L + H +H D ER ++ R G+ VL+ ++ Sbjct: 682 KVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAA 740 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ ++ +V D + IGR R G A + + A + Sbjct: 741 RGLDIKDIRVVINYDFPT-----GVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLI 795 Query: 567 ETERRREKQQKY 578 + +Q Sbjct: 796 KVLEGANQQVPP 807 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 112/677 (16%), Positives = 234/677 (34%), Gaps = 61/677 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 + L+ GL Q + G++ + K+F IA ++ +++ +++ Sbjct: 6 NGIKEWLLQPLINTPEFIDLQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIIT 65 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 + AA L ++K P+ V P+ + + ++ I + R+ Sbjct: 66 ASDQEAAGLTEDLKNLLPDLKVMT-------------FPARRLLPYQVFAYSKEILRQRM 112 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +++ + V++A V A+ P + L L VG + ++ L E Y R Sbjct: 113 EVLESLCRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYER 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F VRG ++DI+P +RVE FD+EV+ + +F+P T + + + I Sbjct: 173 VNLVESHGQFSVRGGILDIYPITG-INPVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P V + +A + + +E R + L+ E R + L+ +++ Y Sbjct: 232 FPVREMVVRQGDWERAYQALSQEYQYR-RRNLDKKSDSEVLDNLSRCEEVLDNISQAKYF 290 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE Y + TL +Y+ A+ L++VDE + R L++ Sbjct: 291 DSIEQYLPYFYDEDI-----TLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMK 345 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G LP + Q A ++ ++ P+ Sbjct: 346 AGRVLPGQFKGYTDW----AGIHKQITGFRAIYFSFLPRQASLW-RSCNTVNF----PVK 396 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID-- 481 ++ +V+ L EIR V++ A L L ++ YL D+ Sbjct: 397 TMQNFMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSEY 456 Query: 482 -----TVERMEIIRDLR--LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 + + + G +++ L G ++ L I + + G + Sbjct: 457 PHLNVQEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPSV 516 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 Q + K L+ + T + +Y+ +T + + + Sbjct: 517 QRQRV-------QDKMELFAELKTGDYVVHV------NHGIGRYDGVVQLTIGDVKRDYL 563 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + G++ P + + + + + K+ L G ++ E Sbjct: 564 LVKYAGEDKL---------YIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKSKVKEA 614 Query: 655 AAQIRDQLHQLRELFIA 671 ++ +L L A Sbjct: 615 VKEMAQELLALYAAREA 631 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 68/512 (13%), Positives = 134/512 (26%), Gaps = 48/512 (9%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR----------VELFDEEVERL 224 +L+ L A + + V+ ++ + A++ + F+ Sbjct: 595 KLSRLGGAEWSRVKSKVKEAVKEMAQELLALYAAREAVQGHPFSKDTVWQQEFEAAFPYE 654 Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 D L P + + ++ A + Sbjct: 655 ETPDQLKAIEEVKADMERPRPMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTI 714 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q E LS + L + +V +H + Sbjct: 715 LAQQHFNTFKERFA------KYPVNIAMLSRFITARRQRQIVQELLLGQVDIVIGTHRLV 768 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + ++ATP L S Sbjct: 769 QDDIKFKDLGLVVVDEE--------QRFGVTHKEKLKQLRQNVDVLTLTATPIPRTLHMS 820 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLT 463 V D + T D I V + ++ IR+ +V + + Sbjct: 821 IVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVREAIRRELGRGGQVYYVHNRVADLDRVA 880 Query: 464 EYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +L+ H + ++ D +FD+L+ ++ GLD+ V+ + + Sbjct: 881 GWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVK 940 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 DAD G + L Q GR R A Y K + E +R + E Sbjct: 941 DADYMGLAQ----LYQLRGRVGRTNR-LAYAYCT---FRGDKVMSELAEKRLSAVREFTE 992 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G + V D+ + L++ + E +G Sbjct: 993 FG---SGYKIAMRDLEIRGAGNILGPEQHG-------HIAAVGFDLYCRLLEEAVLEAKG 1042 Query: 642 LMMQHAQNLEFEE---AAQIRDQLHQLRELFI 670 E A + + L + Sbjct: 1043 GENAKPIETLVELPVTAYIPDEYVIDLNQKVE 1074 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 120/659 (18%), Positives = 220/659 (33%), Gaps = 72/659 (10%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + I R+ L TL G+ GS + +A ++ +RP +V+AP+ AA++ Sbjct: 2 PLVDSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEI 61 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 E++ F P+ D + S + + RL+ + +++R Sbjct: 62 CTELRFFSG------------RPFDVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDR 109 Query: 134 RDVVVVASVSAIYGLGDPDLYLKM-MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + VV + A+ P L L+ G ++ L +L L Y RGT Sbjct: 110 KTAAVVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGT 169 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F VRG ++DIFP + +R+E F + VE + FDPL+ + ++ + + P V Sbjct: 170 FAVRGGIVDIFPPGFEQ-PVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLT 228 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 E + A IK E + LE + + Y +G+E Sbjct: 229 DEVLKSASHHIKA-------RCDELEISPVA------RRELLEQLQQGLYPTGVEWLLPL 275 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL--PS 370 R TLFDY D + VV + + R ++ E G P+ Sbjct: 276 FHPRL-----ETLFDY-AGDAVRVVLDPEALAEEDERFDRELVTAEDQARERGDLFASPA 329 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + T EK+ + D ++V + Sbjct: 330 EFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALD-----IQENTDLKVDVSSDSE 384 Query: 431 Q-VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID-TVERMEI 488 + + L++ + +RV+V + A+ L E L + + SD ER Sbjct: 385 RILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNI--SDRPFPAERERD 442 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 G+ DV++G L G +PE L+ I + + G + G + Sbjct: 443 -----DGKVDVVIGD--LSRGFRLPEEKLIVIAEEEIFGRRQK------RRGVSELRKKQ 489 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + Y I+ G + + G + Sbjct: 490 IMTSLAELKPGDYMVHLDHGIGI------YRGLQHISLSGCAGDFILLEYAGGDKLYLPV 543 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 V + + L+ ++ +L G + A+ ++ +L Q+ Sbjct: 544 DRLNL---------VQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYA 593 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 68/464 (14%), Positives = 136/464 (29%), Gaps = 42/464 (9%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ D ++ + + P V + ++ A Sbjct: 613 FEASFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQV 672 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + + Y +E SRF + + + + + + V Sbjct: 673 AVLVPTTVLAQQHLETFKARL--GAYPVTVEMLSRFRTP----KEQKEILEKVKKGAIDV 726 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + + + ++ATP Sbjct: 727 IIGTHRLLQSDVTFKDLGLLIVDEE--------QRFGVTHKEKLKKYKAVVDILTLTATP 778 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L S + D + T +D + VA DDL+ + + ++ Sbjct: 779 IPRTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNR 838 Query: 456 KRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + E+L H +D E +++ GE ++L+ ++ GLD+P Sbjct: 839 VQSIMNWAEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIP 898 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD G + L Q GR R+ AI R R Sbjct: 899 NANTLIIDRADTFGLAQ----LYQLRGRVGRSKQRAYAYLLIPGEG----AISSDARERL 950 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + E G G D+ G + V D+ + L+ Sbjct: 951 KIIQELTELG---AGFRLATHDLEIRGAGDILGAKQSGN-------IAAVGFDLYTELLE 1000 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIR-----DQLHQLRELFIAA 672 + I L+G + + +E E +I D + + + I Sbjct: 1001 EAIQNLKGE--ERLERVEPEINLRIPAFVPEDYVREPNQRLIIY 1042 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 112/662 (16%), Positives = 228/662 (34%), Gaps = 68/662 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ + +E + L G+ + K+ + +++ ++ N+ A Sbjct: 6 LLAPIRNSTDYIQVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEA 65 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q+Y ++K + + A+ ++PS + + + + ++ R+ A + + Sbjct: 66 RQIYEDLKFYAGDRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETI 111 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LE D +VV ++ L P Y K + VG +D ++ L Y R D + Sbjct: 112 LEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEE 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F +RG++IDIFP+ ++ + +RVELF +E++ + F P T + + I +Y Sbjct: 172 RGQFSIRGDIIDIFPSSAE-MPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKET 230 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ ++ K L + K L + E + LG G+E Sbjct: 231 TIESFDVEAVILKLNQDYKNISKKLNQAAKEN----LKNSLEELSEKLRSLGNFRGVEKL 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 ++ + L Y + L ++DE + G + + LVE G P Sbjct: 287 LPYIYEKTT-----CLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFP 341 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + L + I + + P + Sbjct: 342 GQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFP------PKEIINFDTRP---MASFH 392 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ L EI++ ++ + TK L E+L E YL + Sbjct: 393 GKLELLGKEIQRLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK--------- 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +DL GE +L LR G + + I D + G + +R + + Sbjct: 444 QDLVTGEVVIL--SGNLRRGFEYVKNKFAVITDYEIYGVHKQQRK-------TNKTKDAS 494 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + D G + + +G+ K + I G+ Sbjct: 495 PIKSFIDLKVGDYVVHEGHGIGKYIGI------EELKVEGVKKDYLKIRYSGEGFL---- 544 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 P + D + + K+++L G + + + +L +L Sbjct: 545 -----YVPTDQMDLIQKYIGSDDAPPKLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYAE 599 Query: 669 FI 670 Sbjct: 600 RE 601 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 62/440 (14%), Positives = 128/440 (29%), Gaps = 35/440 (7%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + + I+ A Sbjct: 618 FEELFPYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQV 677 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + ++ + + + + + + + + + Sbjct: 678 AFLVPTTILAQQHYNTFKQRFSDFPITVEMLSRFKNATA------QKKIIENIRTGNVDI 731 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + + + ++ATP Sbjct: 732 VIGTHRLLSKDIEYKDLGLLIVDEE--------QRFGVKHKEALKKLKKSIDVLTLTATP 783 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLT 455 L S + D V + V ++ I + A +V Sbjct: 784 IPRTLHMSMIGIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNR 843 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + L+E RV H + E +I+ + GE+D+LV ++ G+D+ Sbjct: 844 VQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDIS 903 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DADK G + L Q GR R+ + K + E +R Sbjct: 904 NVNTIIIQDADKLGLSQ----LYQLRGRVGRSYRQGYAYLMYEKD----KILSEVAEKRL 955 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K K E G G + D+ G + + D+ K L+ Sbjct: 956 KAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGGEQHG-------HMAAIGYDLYVKLLE 1005 Query: 634 QKIHELEGLMMQHAQNLEFE 653 + + E+ G + ++ E Sbjct: 1006 ETVGEMRGEYTEKFEDTTIE 1025 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 112/394 (28%), Gaps = 25/394 (6%) Query: 207 SDDIALRVELF------DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 D++ + F E ++ + + + V + Sbjct: 142 GDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKT 201 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 K L N + + T+ + E G + + G Sbjct: 202 LGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISS-TCLYGGA 260 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L +VV + + L E L + + K Sbjct: 261 PKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKI 320 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVAT 430 + QT+ +AT + +V V G +D +E+ + Sbjct: 321 VKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSE 380 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 ++ L +I + +VL+ TKRM + L L +H D ER +++ Sbjct: 381 KLRRL-EQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLS 438 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 R G +LV ++ GLD+ ++ +V D + IGR R G Sbjct: 439 HFRSGRSPILVATDVAARGLDIKDIRVVINYDFPT-----GIEDYVHRIGRTGRAGATGV 493 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 A + A + + ++ + Sbjct: 494 AYTFFCDQDSKYAADLIKILEGANQRVPRDLADM 527 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 122/667 (18%), Positives = 238/667 (35%), Gaps = 72/667 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + + + GL +GL Q L G++GS ++ + + + +P ++ N Sbjct: 2 DNIQTFIKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ ++ + +V P ++ + A + + RL Sbjct: 62 QAQKVTDDLTSLLEDRSVLL-------------YPVNELISSEIAVASPELRAQRLDVIN 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +VVA V+AI + P +++ + + VG I+ + RL E+ Y R+D Sbjct: 109 RLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDI+P S+ +R+ELFD EV+ + F+ + + T+ I P Sbjct: 169 SAPGEFSIRGGIIDIYPLTSE-NPVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E +AME+I LAA K L + + D E ++E + Sbjct: 228 ELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHANISH---DKERLSEGQTDQELV 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y + E P +L DY P + LL++DE + + + L+E G Sbjct: 285 KYLSYFY-----EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKI 339 Query: 368 L-PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--IE 424 L L K +Y S + + + + Sbjct: 340 LHDIRLSFSFQKIVAE--QKRPLLYYS------------LFLRHVHHTSPQNIVNVSGRQ 385 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 ++ Q++ L E+ + N V+ K + L+ L ++ S Sbjct: 386 MQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKK---- 441 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 L G+ ++ L+ G ++P + L I + + ++ Q + A R Sbjct: 442 ------ALVQGQVYIM--EGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAER 493 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + S + KY + G++K ++I G + Sbjct: 494 IKS-----------YSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSDKL 542 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ + D V + + + K+++L G + + I D L + Sbjct: 543 ---------YVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIK 593 Query: 665 LRELFIA 671 L A Sbjct: 594 LYAEREA 600 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 81/512 (15%), Positives = 150/512 (29%), Gaps = 48/512 (9%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF------- 227 +L +L + + ++ V+ D+ ++ A + F + E F Sbjct: 564 KLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFPYQ 623 Query: 228 ---DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 D L P + + I+ A + Sbjct: 624 ETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTI 683 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q + E + G+ + R + L + +V +H + Sbjct: 684 LAQQHYETIKERFQDYPINIGLLSRFRTR------KEANETIKGLKNGTVDIVIGTHRLL 737 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + + ++ATP L S Sbjct: 738 SKDVVYKDLGLLIIDEE--------QRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMS 789 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLT 463 V D V T + V L+ I + A +V E Sbjct: 790 MLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKA 849 Query: 464 EYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + + +V Y H + E ++ GE DVLV ++ G+D+P V+ + + Sbjct: 850 DEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVF 909 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 DADK G + L Q GR R+ + + K + E +R + K E Sbjct: 910 DADKMGLSQ----LYQLRGRVGRSNRVAYAYFTYRRD----KVLTEVAEKRLQAIKEFTE 961 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G + D+V D+ + L++ I E +G Sbjct: 962 LG---SGFKIAMRDLTIRGAGNLLGAQQHGF-------IDSVGFDLYSQMLKEAIEERKG 1011 Query: 642 ---LMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 Q ++ E A I + Q + I Sbjct: 1012 DTAKTEQFETEIDVELDAYIPETYIQDGKQKI 1043 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 117/386 (30%), Gaps = 37/386 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + + H + L Sbjct: 144 APTPIQQQAWP-MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPG---DGPIVL 199 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + + ++ G G + P L D Sbjct: 200 VLAPTRELAVQIQQECTKFGKSSR-IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++ + +++ + + L + + K + Sbjct: 259 MLDSNKTNLRRVTYLVLDEAD-----------------RMLDMGFEPQIRKIVDQIRPDR 301 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + D + G + I+EV A + L +I Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361 Query: 440 RQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +VL+ T TKR+A+D+T +L + G +H D ER ++ + R G+ Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 ++V ++ G+D+ ++ V D + + IGR R G A Y Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFP-----GNTEDYVHRIGRTGRAGAKGTAYTYFTSD 476 Query: 558 TPSMAKAIGETERRREKQQKYNEEHG 583 A+ + ++ E Sbjct: 477 NAKQARELVSILSEAKQDIDPKLEEM 502 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 119/404 (29%), Gaps = 17/404 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +EL + + + + I + + +A Sbjct: 23 IELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNP 82 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ + + G +N + L G+ L Sbjct: 83 R----DGRVQALVLCPTRELAIQVAQEISKIGRQNDLKAL-PVYGGQSIDRQIRALRYGV 137 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + + R + R L E L + QT+ Sbjct: 138 QVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLF 197 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINE 447 SAT + + + + P+IE + + + + Sbjct: 198 SATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIG 257 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ TKR ++L LE G LH D+ +R +++ R G+ ++L+ ++ Sbjct: 258 SSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAA 317 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ V+ V D + S + IGR R G AI + K I Sbjct: 318 RGLDVENVTHVINYDIP-----QDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIE 372 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + R +++ I + + I+ L + K Sbjct: 373 RVTKARIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKS 416 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 112/369 (30%), Gaps = 22/369 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK--VLLENNKLLEEQ 284 FD TG P V LL Sbjct: 133 FDKPTGIQCQGWPMALSG--RDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPI-V 189 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + G + R + G P L +V+ I Sbjct: 190 LVLAPTRELAVQIQTECSKFGHSSRIRN-TCVYGGVPKSQQIRDLSRGSEIVIATPGRLI 248 Query: 345 PQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + G R L E L + + K + QT+ SAT + Sbjct: 249 DMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQL 308 Query: 404 SGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTL 454 + + D + G + I+EV + D L + + N + L+ Sbjct: 309 AADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFAS 368 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TKRM +D+T+YL E G +H D D ER ++++ R G ++V ++ G+D+ Sbjct: 369 TKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKG 428 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 ++ V D + + IGR R G AI + + + + R Sbjct: 429 INYVINYDMP-----GNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREAN 483 Query: 574 KQQKYNEEH 582 + Sbjct: 484 QNIPPELLK 492 >UniRef50_B8A609 Novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 (DDX43) n=2 Tax=Eumetazoa RepID=B8A609_DANRE Length = 719 Score = 291 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 52/415 (12%), Positives = 123/415 (29%), Gaps = 39/415 (9%) Query: 193 FRVRGEVID--IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +++ + ++ + + + + L + + H Sbjct: 283 FAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGI-AQTGTGKTLAYLLPGFIHMD 341 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L E + + + + G + Sbjct: 342 GQPMPRDKR--NGPGMLVLTPTRELALQIEAECNKYS--YKGFKSICIYGGGDRNAQIKV 397 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + + + +++ + + L Sbjct: 398 VTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADR-----------------MLDM 440 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPI 422 + + +K QT+ SAT + + D ++ G + Sbjct: 441 GFEPQIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQT 500 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + D + I + ++VL+ K A+DL+ L G V+ LH D + Sbjct: 501 VLFVQEDEKKDYVFDFIHR-MEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQ 559 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R E ++D + G +LV +L GLD+ +++ V D R+ + +GR Sbjct: 560 CDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFP-----RNVEEYVHRVGRT 614 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 R G+++ + +A + R + +++ ++ Sbjct: 615 GRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEELVLMAERYEKHRREKEM 669 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 101/360 (28%), Gaps = 19/360 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F T + P V + K L N++ + Sbjct: 251 FSAPTPIQAQSWP--IALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDGPTVLV 308 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + G + + G P L +VV Sbjct: 309 LSPTRELATQIQDEAKKFGRSSRISSV-CLYGGAPKGPQLRDLERGADIVVATPGRLNDI 367 Query: 347 IG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + L E L + + K + QT+ +AT + + Sbjct: 368 LEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIAS 427 Query: 406 GDVVDQVVRPTGLLDPII--------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 + + V G D ++ + L +I + ++++ TKR Sbjct: 428 DLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKR 487 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 M + L L +H D ER ++ + R G +LV ++ GLD+ ++ + Sbjct: 488 MCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRV 546 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + IGR R G A + A + + + Sbjct: 547 VVNYDFPT-----GVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSV 601 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 56/385 (14%), Positives = 113/385 (29%), Gaps = 41/385 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++V+ + + + F I H + L Sbjct: 234 KPTPIQVQGWPVAL-SGRDMVGIAETGSGKTLAFMIPAVIHINAQPYLQKG---DGPIVL 289 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E R + ++ G G + + P L D Sbjct: 290 ILAPTRELALQIKAECDRFGRSSR-ITNTCVYGGTQRGPQARALQNGVEICIATPGRLID 348 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L + + +++ + + L + + K Sbjct: 349 FLESGTTNLKRVTYLVMDEADR-----------------MLDMGFEPQVRKIVSQIRPDR 391 Query: 388 QTIYVSATPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V+ G + +EV + + LL+ + Sbjct: 392 QTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALM 451 Query: 440 RQRAAINE-----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + +A + L+ TKR A+D+T L G +H D ER ++ + Sbjct: 452 QAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKT 511 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G +++ ++ GLD+ +V V D + + IGR R +G A + Sbjct: 512 GRSAIMIATDVASRGLDVKDVKYVINYDFP-----GTIEDYVHRIGRTGRAGASGVAYSF 566 Query: 554 GDKITPSMAKAIGETERRREKQQKY 578 +A+ + R + Sbjct: 567 FSPDKGKLARQLVNCLREANQSVPE 591 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 52/446 (11%), Positives = 121/446 (27%), Gaps = 48/446 (10%) Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE-----LQYARNDQAFQRGTFRVRGEVI 200 D + L + + + L + + Q G + Sbjct: 58 LEPFKKDFFTPASSVLER----SRTEVCQYLDKNEITMIGKNVPAPIMQFGESGFPSVFL 113 Query: 201 DIFPAESDDIALRVELFDEEV-ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 D + ++ + + + + H Sbjct: 114 DEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPALIHISNQPR----- 168 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQ-FDLEMMNELGYCSGIENYSRFLSGRGP 318 + +A E + +++ + + G + Sbjct: 169 LLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQADDLRRGVEIV 228 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D+L + + +++ + + L + + K Sbjct: 229 IATPGRLIDFLESGTTNLRRTTYLVLDEADR-----------------MLDMGFEPQIRK 271 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVAT 430 Q + SAT + + + + + G L+ IIE Sbjct: 272 IISQIRPDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYE 331 Query: 431 QVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L + + + + + ++ TKR + +T ++ +G R +H D +R ++ Sbjct: 332 KETRLFKLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVL 391 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG 548 R +LV ++ GLD+ +V V D + I IGR R+ G Sbjct: 392 NTFRRLRSGILVATDVASRGLDVDDVKYVINFDFPN-----NTEDYIHRIGRTGRSTNKG 446 Query: 549 KAILYGDKITPSMAKAIGETERRREK 574 + + + A + R + Sbjct: 447 TSYTFFTPANGAKAGDLIGVLREANQ 472 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 110/675 (16%), Positives = 225/675 (33%), Gaps = 74/675 (10%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQ 72 + + L + L+ G + G S K + + +V+ + T A + Sbjct: 4 PLLELQEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTYDDTRAKE 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 +Y +++ F P+ D + + R++ + ++E Sbjct: 64 IYDDLRSFT---------------SRVWLYPAKDLLFYSADIHGNLMARQRIAVLRRLME 108 Query: 133 RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 R+ VVV ++ + L + + + G +ID RL + Y R Q G Sbjct: 109 DREGVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMG 168 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F +RG ++DIFP ++++ +R+EL+D+EV+ + FD + + V + TIYP V Sbjct: 169 QFSIRGGIVDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAEVVL 227 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 +++ + +++E K L E +K E R+ ++E G++ Y R Sbjct: 228 SADQLAAGIRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIR 287 Query: 312 FLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + + +Y P ++ +DE + + R +E G+ LP Sbjct: 288 YFCPDTV-----SFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLEKGYLLPG 342 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + E + + + G V + ++ Sbjct: 343 QTELLYPAAEILARMQKPYAVMLTGLD---QKLPGMKVNQKFSIDVKNVN------SYQN 393 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI---------- 480 + L+ ++ + RV++ + ++ A L L E+ R Sbjct: 394 SFEILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGESGNAGGEG 453 Query: 481 -------DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + +R +R GE +LV L G + P + V I + D G + + Sbjct: 454 AGSADTGNPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMFGVEKKRK 511 Query: 534 SLIQTIGRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 N GKAI + + + + + K Sbjct: 512 RRK------KTNYQGKAIQSFTELSVGDYVVHEEHGLGIYKGI------EKVERDKVIKD 559 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + I G P +++ +A + K+++L G + Sbjct: 560 YIKIEYG---------DGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEWNKTKTRVR 610 Query: 653 EEAAQIRDQLHQLRE 667 +I L +L Sbjct: 611 GAVQEIARDLVKLYA 625 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 64/432 (14%), Positives = 126/432 (29%), Gaps = 35/432 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D + + + + ++ A + Sbjct: 645 FEELFPYDETDDQMDAIDAVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQV 704 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q ++ M + ++ SRF + + L + + Sbjct: 705 VYLVPTTILAQQHYNTFVQRMKDF--PVRVDMLSRFCTP----ARQKRTLEDLRKGMVDI 758 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + ++ATP Sbjct: 759 VIGTHRVLSKDMQFKDLGLLIIDEE--------QRFGVAHKEKIKHLKENVDVLTLTATP 810 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLT 455 L S + D V +D V + + I + A N +V Sbjct: 811 IPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNR 870 Query: 456 KRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +++ ++ H + E I+ D GE DVLV ++ GLD+ Sbjct: 871 VTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIS 930 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DAD+ G + L Q GR R+ K K + E +R Sbjct: 931 NANTMIIHDADRMGLSQ----LYQLRGRVGRSNRTSYAFLMYKRD----KLLREEAEKRL 982 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + E G G+ + D+ G + + V D+ K L Sbjct: 983 QAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG-------HMEAVGYDLYCKMLN 1032 Query: 634 QKIHELEGLMMQ 645 Q + L+G ++ Sbjct: 1033 QAVLALKGETLE 1044 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 288 bits (736), Expect = 7e-76, Method: Composition-based stats. Identities = 72/459 (15%), Positives = 137/459 (29%), Gaps = 24/459 (5%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L +T + I + + A L Sbjct: 20 ALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGK----TAAFALPILQNLSPEISTT 75 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + T+ + E + ++ G+ L + +VV Sbjct: 76 QALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSGAQVVVGTPGR 135 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + I + + L E L E Q SAT Sbjct: 136 ILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMALFSATMPYRIR 195 Query: 402 EKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + D ++ V + D L+ + + V+V Sbjct: 196 QIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL--EVEDYQGVIVFVR 253 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK E++ E L++HG R +H DI R II + G D+LV ++ GLD+ Sbjct: 254 TKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAARGLDVER 313 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V+ V D + + IGR R G IL+ + +I R+R Sbjct: 314 VTHVINYDMPH-----DNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSIERHTRQRI 368 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIA-KTKAKGRGKSRPIVEPD--NVPMDMSPK 630 ++ + +H I + + +I + + + + + +V ++ Sbjct: 369 EKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVDVAAALALL 428 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + E M + A + E A + ++ LR F Sbjct: 429 LHKDMPWRKELNMPKAASAFKEERA-RAGEKGLDLRGRF 466 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 66/441 (14%), Positives = 132/441 (29%), Gaps = 30/441 (6%) Query: 165 MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI-FPAESDDIALRVELFDE---- 219 D ++ + + Y + +R V + ++ VE FDE Sbjct: 87 QEWDLDSLP-KFEKSFYKEHADVAERSQRDVDEFRKKHEMAVQGRNVPRPVETFDEAGFP 145 Query: 220 ----EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + FD T P + + + + L Sbjct: 146 QYVLSEVKAQGFDRPTAIQSQGWPMALSG-RDVVGIAETGSGKTLTYCLPAIVHINAQPL 204 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + T+ + G + R + G P L + Sbjct: 205 LAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRN-TCVYGGVPKGPQIRDLSRGVEV 263 Query: 336 VVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + I + G R L E L + + K QT S Sbjct: 264 CIATPGRLIDMLEAGRT-NLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWS 322 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + + D + G + I+EV + D ++ + + Sbjct: 323 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEN 382 Query: 446 NE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + L+ T TKR+A+++T +L + G +H D ER ++ + + G+ ++V + Sbjct: 383 RANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATD 442 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + G+D+ +++ V D + + IGR R G AI + A+ Sbjct: 443 VASRGIDVRDITHVLNYDYPN-----NSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQAR 497 Query: 564 AIGETERRREKQQKYNEEHGI 584 + ++Q + Sbjct: 498 DLVTILTEAKQQIDPRLAEMV 518 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 106/662 (16%), Positives = 246/662 (37%), Gaps = 64/662 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + G++ + G++ S +++ I V +P +++ + Sbjct: 4 DGLMEPIRKSSEFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDV 63 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + P+ Y P+ + +++ + RL + Sbjct: 64 EARKLYEDLCFYLPQ---------------VYYFPTKEVVFYNIDAISGDLRWERLKVIR 108 Query: 129 AMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ML +++ V ++ +LY + ++VG +D + I +L + Y R + Sbjct: 109 EMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F +RG ++DI+ S + RVELF +EVE + F+ + + + + I+ Sbjct: 169 ERRGQFSIRGGIMDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + RERI +IKE+LA+ + L EN +++ T +LE + E I+ Sbjct: 228 EIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESID 287 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ + + DY ++V D ++ +Y + +E G Sbjct: 288 SFLPYFYEHT-----SSFLDYAKNYFVIVDDIK-RCSGKLDSVYFEFLENYKNFLERGNV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP + E + + I + +V+ Sbjct: 342 LPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLIVNFTQITLNN--------- 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ L+ EI+ + + + ++L+ + T+ E L + L ++G Y + Sbjct: 393 YQGKLELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RD 442 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ +++ GE + G L +G + PE+ + I D + G + + I + + Sbjct: 443 VVNEIKPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAKRKN-----IRKTNKKGT 495 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K + + + + + QG K ++++ ++ Sbjct: 496 SKIKSFTELKPGDFIVHVNHGIGVYKGI------KQLELQGHKKDYLELVYECEDKL--- 546 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 P+ + D V + + KI++L + + ++ + L +L Sbjct: 547 ------YVPVEQLDMVQKYIGSEGKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYA 600 Query: 668 LF 669 + Sbjct: 601 IR 602 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 136/453 (30%), Gaps = 37/453 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++E D L+ + + + + ++ A Sbjct: 620 FEDEFPYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQV 679 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q ++ ++ I+ SRF + + + V Sbjct: 680 AFLVPTTILAQQHYNNFIQRFSDF--PVKIDMISRFKTAAQQKAT----IKAVKIGDVDV 733 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + + + + +SATP Sbjct: 734 LIGTHRILQKDVQFKDLGLLIIDEE--------QRFGVSHKEKIKQIRKNVDVLTLSATP 785 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L S V D V T + V D L+ + + + +V Sbjct: 786 IPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGGQVYFVYNR 845 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +++ Y+ + +V H + E II D ++D+LV ++ G+D+ Sbjct: 846 VENIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQ 905 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DADK G + L Q GR R + K + E +R Sbjct: 906 NVNTMVIYDADKMGLSQ----LYQLRGRVGRTNRIAYCYLSYRKD----KVLKEVAEKRL 957 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K K E G G + D+ G ++ V D+ + L+ Sbjct: 958 KVIKEFTELG---SGFKIALKDLEIRGAGNMMGSSQHG-------HMAAVGYDLYCRMLE 1007 Query: 634 QKIHELEGLMMQHAQN--LEFEEAAQIRDQLHQ 664 I ++G + + +E + A I D + Sbjct: 1008 DSIKLIKGEIDKEPVETTVELKVDAYIPDNYIE 1040 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 59/430 (13%), Positives = 123/430 (28%), Gaps = 64/430 (14%) Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R FQ G F + + A++ + + + + + Sbjct: 112 RPILTFQEGCFPDYCMKMIETQNYTTPTAIQSQGWPIAL-SGRDMVGIAQTGSGKTLAYI 170 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELG 301 + H ++ +A E + +++ + G Sbjct: 171 LPAIVHI-----THQPYLQRGDGPMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGG 225 Query: 302 YCSGIENY-------------------------SRFLSGRGPGEPPPTLFDYLPADGLLV 336 G + P L D+L A + + Sbjct: 226 APKGSQLRDWREFGALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNL 285 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 +++ + + L + + K E QT+ SAT Sbjct: 286 RRCTYLVLDEADR-----------------MLDMGFEPQIRKIVEQIRPDCQTLMWSATW 328 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAA-INE 447 + + D + G L I++V + + + L+ ++ + Sbjct: 329 PKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDN 388 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + L+ TK+ ++LT + +G +H D ER ++ + R G +LV ++ Sbjct: 389 KTLIFAETKKKVDELTRRMRRNGWPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAA 448 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ ++ V D I IGR AR+ G A + AK + Sbjct: 449 RGLDVDDIRFVINYDYPH-----CSEDYIHRIGRTARSNKTGTAYTFFTPGNMKQAKELI 503 Query: 567 ETERRREKQQ 576 + + Sbjct: 504 AVLKEANQAI 513 >UniRef50_Q5N7W4 DEAD-box ATP-dependent RNA helicase 30 n=3 Tax=Oryza sativa Japonica Group RepID=RH30_ORYSJ Length = 666 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 105/378 (27%), Gaps = 37/378 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + + + + + + H + L Sbjct: 273 EPTPIQSQGWPMAL-KGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQG---DGPIVL 328 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + ++ G G + P L D Sbjct: 329 ILAPTRELAVQIQQESGKFGSYSRT-RSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 387 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +++ + + L + + K Sbjct: 388 MLEGGHTNLRRVTYLVLDEAD-----------------RMLDMGFEPQIRKIVAQIRPDR 430 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSEI 439 QT+Y SAT + + + G + IIEV + L + Sbjct: 431 QTLYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLL 490 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R+L+ TK+ + +T L G +H D ER ++ + + G+ + Sbjct: 491 SDLMD-GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPI 549 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 + ++ GLD+ ++ V D + I IGR R +G A + Sbjct: 550 MAATDVAARGLDVKDIKCVINFDFPT-----TLEDYIHRIGRTGRAGASGTAFTFFTLSN 604 Query: 559 PSMAKAIGETERRREKQQ 576 ++ + + R + Sbjct: 605 AKFSRNLVKILREAGQVV 622 >UniRef50_Q54CE0 Probable ATP-dependent RNA helicase ddx17 n=2 Tax=Eukaryota RepID=DDX17_DICDI Length = 785 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 51/380 (13%), Positives = 113/380 (29%), Gaps = 37/380 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + + + L F + H ++ L Sbjct: 406 NPTPIQSQAWPIAL-KGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVL---REDDGPIVL 461 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + T G + + P L D Sbjct: 462 VLAPTRELALQIQEETNK-FGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + + +++ + + L + + K Sbjct: 521 ILESGKTNLRRVTYLVLDEAD-----------------RMLDMGFEPQIRKIISQIRPDR 563 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + D + G + I+EV + + +LS + Sbjct: 564 QTLMFSATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFL 623 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +E+V+V T++ +DL L+ G + +H + ER ++ + G + Sbjct: 624 GS-VGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPI 682 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 ++ ++ GLD+ ++ V D + I IGR AR +G + Sbjct: 683 MIATDVASRGLDIKDIKYVVNYDFPN-----TIEVYIHRIGRTARAGASGVSYSLLTTDN 737 Query: 559 PSMAKAIGETERRREKQQKY 578 +A + + +++ Sbjct: 738 ARLANELIKVLTEAKQKIPI 757 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 108/654 (16%), Positives = 223/654 (34%), Gaps = 51/654 (7%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L G + G S K + + P +V+ + T A ++Y Sbjct: 2 ELQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYD 61 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + F + P+ D + + R++ + ++E + Sbjct: 62 DFRNFTKQ---------------VWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQG 106 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID +RL + Y R Q G F Sbjct: 107 GVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDIFP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++ Sbjct: 167 IRGGIIDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKK 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 226 QLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 + +Y P +V + + + G + L Sbjct: 286 PDTV-----SFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQTE 340 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 EE A + + V T + + G V + ++ + Sbjct: 341 LLYPVEEVMARVQRPLTVMLTGLD--QKLPGMKVNHKFSIDVKNVN------SYQNSFEI 392 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE----RMEIIR 490 L+ ++ + RV++ + ++ A L L E+G R +E R Sbjct: 393 LIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKDA 452 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 ++ +++V L G + P + V I + D G + ++ N GKA Sbjct: 453 HPKVKPGEIMVTYGSLHRGFEYPLLKFVYITEGDMFGVEKKKKRRK------KTNYQGKA 506 Query: 551 I-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 I + + + + + K + I A Sbjct: 507 IQSFSELSVGDYVVHEEHGLGIYKGI------EKVERDKVIKDYIKIEYGDGGNLYLPAT 560 Query: 610 GRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + D + + ++G + + A++L AA+ Sbjct: 561 RLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYAARQEK 614 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 65/460 (14%), Positives = 132/460 (28%), Gaps = 39/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D + + + + ++ A + Sbjct: 629 FEELFPYDETDDQMDAIDAVKTDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQV 688 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q ++ M + ++ SRF + + L + + Sbjct: 689 VYLVPTTILAQQHYNTFVQRMKDF--PVRVDMLSRFCTP----ARQKRTLEDLRKGMVDI 742 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + ++ATP Sbjct: 743 VIGTHRVLSKDMQFKDLGLLIIDEE--------QRFGVAHKEKIKQLKENVDVLTLTATP 794 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLT 455 L S + D V +D V + + I + A N +V Sbjct: 795 IPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNR 854 Query: 456 KRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +++ ++ H + E I+ D GE DVLV ++ GLD+P Sbjct: 855 VTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIP 914 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DAD+ G + L Q GR R+ + K + E +R Sbjct: 915 NANTMIIHDADRMGLSQ----LYQLRGRVGRSNRTSYAFLMYRRD----KLLKEEAEKRL 966 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + E G G+ + D+ G + + V D+ K L Sbjct: 967 QAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG-------HMEAVGYDLYCKMLN 1016 Query: 634 QKIHELEGLMM-QHAQNLEFE---EAAQIRDQLHQLRELF 669 + + L+G + + E +A + + Sbjct: 1017 EAVLALKGEKPDEDSYETVVECDIDAYIPSSYIKNEYQKL 1056 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 115/379 (30%), Gaps = 38/379 (10%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 V + F + H L L N Sbjct: 246 IVLSGHDLIGIAQTGSGKTLSFMLPALVHINAQDPVKPGE---GPIALVLAPTRELANQI 302 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + + + + G + P L D+L ++ + + Sbjct: 303 QEQCFKFGSKCK-ISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRV 361 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 +++ + + L + K QT+ SAT Sbjct: 362 TYLVLDEA-----------------DRMLDMGFEPSIRKIVGQIRPDRQTLMFSATWPQT 404 Query: 400 ELEKSGGDVV-DQVVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + D + G +D +E+ + + D + EI +++ + Sbjct: 405 VRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEIIDKSQKYDR-VKEILSTMTRSDKTI 463 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T TK+ +DL++ L+ R +H D +R +++ + G + L+ ++ GL Sbjct: 464 IFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGL 523 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMA-KAIGET 568 D+ ++ LV D + + +GR R GKAI + D+ K + + Sbjct: 524 DVKDIKLVINYDFP-----KQIEDYVHRVGRTGRAGAQGKAISFLDQYEDKKISKELVDV 578 Query: 569 ERRREKQQKYNEEHGITPQ 587 ++ ++ + Sbjct: 579 LKQNNQEISQDLLELSEAN 597 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 57/391 (14%), Positives = 118/391 (30%), Gaps = 24/391 (6%) Query: 209 DIAL----RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI- 263 + ++ D ++ L + +T + + E Sbjct: 109 PNPVESISKIGFPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFI 168 Query: 264 KEELAARR-KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L+ + T+ E + + +E+ R G Sbjct: 169 LPAFVHILAQPSLKYGDGPI-VLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKS 227 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L +++ I + R L E L + + K E Sbjct: 228 G-QIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVE 286 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + + G + I + ++ Sbjct: 287 QIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKI 346 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 +L +++ N+R++V TK+ A+ +T+ L G +H D ER ++ D Sbjct: 347 ANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDF 406 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 + G+ +L+ ++ GLD+ +V V D + IGR R +G + Sbjct: 407 KTGKSPILIATDVASRGLDIKDVKYVVNFDFPN-----QIEDYVHRIGRTGRAGAHGASF 461 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + +A+ + + R E+ E Sbjct: 462 TFLTSDKYRLARDLVKILRESEQPVPPQLEK 492 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 285 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 125/664 (18%), Positives = 236/664 (35%), Gaps = 64/664 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 E ++ +G+ G + + G+ G+ F N++ + + +++ + Sbjct: 2 KLSDLLLSSEKTEKIMKGINQGQ-NLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + Y ++ PE V P S+ + + R+ ++ Sbjct: 61 LNRYYEDLIRMMPEEKVLL-------------YPESEVLPHEQIVPDLAETAQRIRVLQS 107 Query: 130 -MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +++ V++ + +A+ P + K + L VG ID +L Y R + Sbjct: 108 VITDKKPAVLLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDIFP + R+ELF +E++ + F+P T + ++ + I P Sbjct: 168 ENPGEFSIRGGIIDIFPLSVNK-PFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAR 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +I +A+ IK + L ENN E L ++ LE + E G E Sbjct: 227 EIIVSPRQIKKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSE 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + TL DYLP D ++ D++ T +I G + + TL+E G Sbjct: 287 QFLPYYYPEL-----HTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP+ N + + L S+T N EL +E P Sbjct: 342 LPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWVKDFEK------VSFTTRSVE--P 393 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++D +R+ RV VT + A + YL+E+ V + R E Sbjct: 394 YHGKLDLFAERVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF---------RRE 444 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 R ++V L EG + +++L + + G + +R + I N Sbjct: 445 EFSRER-----IIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRRQLNDI------EN 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G I + + KY + QG +K + + G++ Sbjct: 494 GVKIS-----SIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVP 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + + DN P + +L G + + E ++ L +L Sbjct: 549 TDQFNLVQKYIGADNKPPKLY---------KLGGNDWKKVKQKVKESVKEMAIGLLELYA 599 Query: 668 LFIA 671 Sbjct: 600 ERET 603 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 65/460 (14%), Positives = 130/460 (28%), Gaps = 39/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + P + + I+ A Sbjct: 619 FEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQT 678 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q E M IE SRF + + L A + + Sbjct: 679 AVLVPTTILAQQHYNTFSERMKNY--PINIEMISRFKTP----AEQREVLKKLAAGEVDI 732 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + + + + ++ATP Sbjct: 733 IIGTHRLLSRDVVFNDLGLLIIDEE--------QRFGVSHKEKIKDLKRNVDVLTMTATP 784 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLT 455 L + V D V T + + + + +R+ +V Sbjct: 785 IPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNR 844 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++ +++ RV H ++ + ++ D ++DVLV ++ GLD+P Sbjct: 845 VEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIP 904 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + + AD+ G + L Q GR R+ + + + E +R Sbjct: 905 NVNTIIVNRADQMGLAQ----LYQLRGRVGRSNRIAYAYLLYEKD----RVLPEVAEKRL 956 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K G G + D+ G + +V + K L+ Sbjct: 957 RAIKEFTNLG---SGFKIAMRDLEIRGAGNLLGPEQHG-------HIASVGFSLYCKLLE 1006 Query: 634 QKIHELEGLMMQHAQNLEFEE----AAQIRDQLHQLRELF 669 + EL+G E A + + R+ Sbjct: 1007 GAVEELKGKEKDKGITRVEIELDIDAYLPDEYITDSRQKI 1046 >UniRef50_UPI000192615D PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 n=1 Tax=Hydra magnipapillata RepID=UPI000192615D Length = 745 Score = 285 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 113/404 (27%), Gaps = 39/404 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + + + F + H + Sbjct: 292 FTEPSPIQCQAWPVLLSGMDCIGI-AQTGTGKTLAFLLPAFIHIDGQPIPRDKRG----G 346 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E + +E + + + G + P L Sbjct: 347 PSCLVLSPTRELAQQIEMEVKKFHYRGIRSVCIYGGGDRSAQINLVRQGVEIIIGTPGRL 406 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L V +++ + + M + K Sbjct: 407 NDLLMNGFFSVKSVTYLVLDEADRMLD-----------------MGFEPEIKKILLDIRP 449 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLS 437 QTI SAT + + D + G LD ++E + D ++ Sbjct: 450 DRQTIMTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMD 509 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIRDLRLG 495 I A + ++++ K A+D++ L G ++ +H D D +R + + D++ G Sbjct: 510 FI-SAMAPDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTG 568 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 VL+ ++ GLD+ +++ V D + + IGR R G A+ + Sbjct: 569 AARVLIATDVASRGLDIKDLTHVLNYDFPRH-----IEDYVHRIGRTGRAGRSGCALTFV 623 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + ++ + D Sbjct: 624 TREDWMHVAKLIPIMEEAGQEVPEELIEMAERWKKTQDRRDEEK 667 >UniRef50_C8WWM6 DEAD/DEAH box helicase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WWM6_ALIAD Length = 541 Score = 285 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 55/396 (13%), Positives = 108/396 (27%), Gaps = 24/396 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++ + + + + + L R Sbjct: 27 RVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVERVSTEPRVQ 86 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ + R + G+ L +V+ Sbjct: 87 -----AIVLTPTRELAIQVAGEIRKIAKYKRVRSV-PIYGGQSIVHQIRALKQGVQIVIG 140 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I R L E L + QT+ SAT Sbjct: 141 TPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFP 200 Query: 398 NYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 N + + D +D + ++D L + + + Sbjct: 201 NEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSE--DIQLGI 258 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKR +DL E L G LH D+ +R ++R R E ++LV ++ GL Sbjct: 259 IFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGL 318 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V+ V D + S + IGR R G AI + K I Sbjct: 319 DVDDVTHVINYDVP-----QDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREI 373 Query: 570 RRREKQQKYNEEHGITPQGLN--KKVVDILALGQNI 603 +++ ++ + + + + + + Sbjct: 374 KQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGL 409 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 285 bits (728), Expect = 6e-75, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 115/393 (29%), Gaps = 39/393 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A + ++ + + + + F + + R +I + Sbjct: 146 AFTSPTPIQAQGWPMAL-TGKDMVGIAQTGSGKTLSFVLPA---LIHARAQIPLRSGDGP 201 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L R G S + + P Sbjct: 202 IVLVLAPTRELCLQIKDVFDEYC-RFFNMRCTAVYGGVSSYTQKRDISMGCEVVVGCPGR 260 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D L + + + + M L + + K Sbjct: 261 LIDLNEQGALHFNRVTFLVLDEADRM-----------------LDMGFEPQLKKIIVNTN 303 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLL 436 QT+ SAT + + + V G + I+ V + + L Sbjct: 304 PDRQTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLH 363 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + NE+V++ TKRM ++L + L G + +H D R II D R G Sbjct: 364 ESLNE--KKNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGY 421 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYG 554 ++L+ ++ GLD+ V+LV D + + IGR AR G + + Sbjct: 422 KNILIATDVAARGLDIKNVALVINYDFPN-----NIEDYVHRIGRTARGDVTEGLSHSFF 476 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + AK + + + + T + Sbjct: 477 TSENSACAKELVKILKEANQDVPSKLIDMSTTK 509 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 119/383 (31%), Gaps = 39/383 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 A++ + + S F + + + H + + Sbjct: 301 YKAPTAIQAQGWP-IAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRG---DGPI 356 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + G G + P L Sbjct: 357 ALVLAPTRELAQQIQQVATEFGSS-SYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRL 415 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L A + +++ + + L + + K Sbjct: 416 IDFLSAGSTNLKRCTYLVLDEADR-----------------MLDMGFEPQIRKIVSQIRP 458 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPV---ATQVDD 434 QT+ SAT + + + + + G + +++V ++ Sbjct: 459 DRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKT 518 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LLS+I + ++++ TKR ++L ++ G R +H D ER ++R+ R Sbjct: 519 LLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRS 578 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G+ ++LV ++ GLD+ + V D ++ I IGR R+ G + + Sbjct: 579 GKSNILVATDVAARGLDVDGIKYVINFDYP-----QNSEDYIHRIGRTGRSNTKGTSFAF 633 Query: 554 GDKITPSMAKAIGETERRREKQQ 576 K AKA+ + R ++ Sbjct: 634 FTKNNAKQAKALVDVLREANQEI 656 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 110/391 (28%), Gaps = 43/391 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + F + + + Sbjct: 166 YVKPTPVQRNAIP-ILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVY 224 Query: 266 ELAAR--RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 LA L E ++ + +T ++ G + P Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTG-VKVVVAYGGTPVNQQIRELERGVDILVATPG 283 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D L + + + + + M L + + K + Sbjct: 284 RLNDLLERGRVSLQMVRFLALDEADRM-----------------LDMGFEPQIRKIVQQM 326 Query: 384 ----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQV 432 QT+ SAT + + + + G + +E + + Sbjct: 327 DMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKR 386 Query: 433 DDLLSEIRQRAAINER-----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L+ + + + LV TK+ A+ L +L +G +H D ER Sbjct: 387 SHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREV 446 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 +R + G +LV ++ GLD+P V+ V D + IGR R Sbjct: 447 ALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPN-----DIDDYVHRIGRTGRAGN 501 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQK 577 +G A + + +MAK + E + ++ Sbjct: 502 SGLATAFFNDNNTTMAKPLAELMQEANQEVP 532 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 50/388 (12%), Positives = 107/388 (27%), Gaps = 36/388 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-------TPRERIVQ 258 ++ + V F + + + Sbjct: 221 YERPTPVQ-KFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSLRI 279 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 L L E ++ T + G + Sbjct: 280 KRMAYPVALVLSPTRELAIQTYEESRKFCFGTG-IRTNVLYGGSEVRSQIMDLDRGSDII 338 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D + + + + + + M A + + +P +LD Sbjct: 339 VATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLD----- 393 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQ 431 QT+ SAT + + + + + G + + + Sbjct: 394 -------GRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHK 446 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L+ + ++ +V KR A+ + ++L + +H D ER +R Sbjct: 447 PRLLVKLLLEQGE--GLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRL 504 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G+ +LV ++ GLD+P ++ V LD + + IGR R N G A Sbjct: 505 FRSGQRPILVATDVAARGLDIPNITHVINLDMPC-----NIDDYVHRIGRTGRAGNTGLA 559 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKY 578 + ++ + + + + Sbjct: 560 TSFVNESNKPILRDLLAALEESGQDAPE 587 >UniRef50_Q9GV13 Vasa-related protein CnVAS1 n=6 Tax=Eumetazoa RepID=Q9GV13_HYDMA Length = 797 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 113/391 (28%), Gaps = 33/391 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT--PRERIVQAMEEI 263 ++ + F I + + + Sbjct: 373 YIKPTPVQKYAIP-IITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQFRSELTSSLSEVQA 431 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L E ++ Q T ++ G P Sbjct: 432 PLALVIAPTRELAVQIQKEARKFAQNTS-IKPVVIYGGVQVAYHLRQVQQDCHLLVGTPG 490 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D+L + + + ++ + + M + + F +P Sbjct: 491 RLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPP------------- 537 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLL 436 T+ SAT + + + V G + I + + D L+ Sbjct: 538 KEDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLI 597 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + R LV TKR+A+ L YL ++G +H D +R E + + + G Sbjct: 598 EILDTEGTN--RNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGT 655 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 VL+ + GLD+ +V V D I IGR R GKAI + Sbjct: 656 QHVLIATAVAARGLDIADVKQVINYDLP-----DEIEEYIHRIGRTGRIGNKGKAISFFT 710 Query: 556 K-ITPSMAKAIGETERRREKQQKYNEEHGIT 585 + +A+A+ +T E++ E Sbjct: 711 RGKDEGLARALVKTLADAEQEVPSWLEEAAE 741 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 57/427 (13%), Positives = 122/427 (28%), Gaps = 40/427 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ A++V+ + + + F + H + Sbjct: 188 FTEPTAIQVQGWPVAL-SGHDMIGIAETGSGKTLGFLLPAMIHIRAQPLLRYG---DGPI 243 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + G + S P L Sbjct: 244 CLVLAPTRELVEQIREQANQFGSIFK-LRNTAIYGGVPKRPQQASIRNGVEICIACPGRL 302 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L + +++ + + L + + K Sbjct: 303 IDLLEEGYTNLSRVTYLVLDEAD-----------------RMLDMGFEPQIRKLVSQIRP 345 Query: 386 APQTIYVSATPGNYELEKSGGDVVD-QVVRPTG---------LLDPIIEVRPVATQVDDL 435 QT+ SAT + + + + G + + V + + L Sbjct: 346 DRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKL 405 Query: 436 LSEIRQRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + Q +VL+ TKR A+ LT+ L G +H D ER ++ + R Sbjct: 406 KMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRT 465 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G +++ ++ GLD+ +++ V D I IGR R G ++ + Sbjct: 466 GASPIMIATDVAARGLDIKDINFVINFDFPN-----QIEDYIHRIGRTGRAGATGVSLSF 520 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 MA + + + +++ E ++PQ + N G + Sbjct: 521 FTPDKYRMASDLIKVLKEAKQRVP-PELFKLSPQNKRMHPRNTGFRRNNPNSLPLGGSNR 579 Query: 614 SRPIVEP 620 + ++ Sbjct: 580 AYRDLQR 586 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 62/469 (13%), Positives = 127/469 (27%), Gaps = 43/469 (9%) Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRR--LAELQYARNDQAFQRGTFRVRGEVI 200 SA + Y + L + + A ++ ++ V ++ Sbjct: 46 SAELPKFEKKFYQEHPLSASRSEA-EVEAFRKKYKMSLSGRDVPRPVLSFNELNVPDYIL 104 Query: 201 DIFPAESD--DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 + ++ + + + + F + H + + Sbjct: 105 SVIAKNGWQLPTPIQSQGWPMAL-SGRDVVGIAQTGSGKTASFLLPAVIHIMAQPRLLRN 163 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 L L L+ + M G G + G Sbjct: 164 E---GPICLILVPTRELAQQVLVVAKEFADAAS-LRAMCFYGGSAKGTQLREMQKGGEIC 219 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D++ L+ +++ + + L + + K Sbjct: 220 IATPGRLIDFIRVQRNLLSRVTYLVLDEAD-----------------RMLDMGFEPQIRK 262 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVAT 430 QT+ SAT + + D + G + I+E+ + Sbjct: 263 IIGHTRPDRQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWS 322 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + L+ + R LV TKR + LT L G V +H +R + Sbjct: 323 KEQRLIELLTSFGR--ARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLA 380 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 + + G ++LV ++ GLD+ + V D I IGR AR+ G Sbjct: 381 NFKSGRMNILVATDVASRGLDIDNIEYVVNFDFPN-----QTEDYIHRIGRTARSDKTGT 435 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 A + A+ + + ++ +K + Sbjct: 436 AFTFFTHKNVRQARDLIDILDEANQEISAELVQLAGMSNYLRKSSTLKK 484 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 56/419 (13%), Positives = 130/419 (31%), Gaps = 41/419 (9%) Query: 193 FRVRGEVIDIFPA--ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F ++++ S ++ + + ++ + F + H Sbjct: 288 FAEYPDMLEEITKMGFSKPSPIQSQAWPILLQG-HDMIGIAQTGTGKTLAFLLPGMIHTE 346 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 L L E + + + G ++ Sbjct: 347 YQSTPRG--TRGGANVLVLAPTRELALQI--EMEVKKYSFRGMKAVCVYGGGNRNMQISD 402 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + A+ + V +++ + + L Sbjct: 403 LERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADR-----------------MLDM 445 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPI 422 + + K QTI SAT + + + + G + I Sbjct: 446 GFEPQIRKVMLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQI 505 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 I++ + ++ + + +++++ K A+DL+ L G + +H + D Sbjct: 506 IKLMEDDMDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQ 565 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ++R + I D++ G +LV ++ GLD+ +++ V D + + +GR Sbjct: 566 MDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPH-----NIEEYVHRVGRT 620 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R G +I + + +MAK + E + E++ + K + D A Sbjct: 621 GRAGRQGTSISFFTREDWAMAKELIEILQEAEQEVP---DELHNMARRFKAMKDKRAAE 676 >UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 Tax=Trypanosoma RepID=Q388E8_9TRYP Length = 660 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 104/382 (27%), Gaps = 31/382 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI---VQAMEE 262 + ++ + + I + Sbjct: 177 YTKPTPVQSLGIPTALNH-RDLMACAQTGSGKTASYLIPAINEILLNISNRPPYSPGSHS 235 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L L E ++ T T ++ G + + + P Sbjct: 236 SPQALILAPTRELSLQIYGEARKFTYHTP-VRCVVVYGGADPRHQVHELSRGCKLLVATP 294 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D + + + + + M + ++ G + Sbjct: 295 GRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDMPRAGQ------- 347 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDL 435 QT+ SAT + + G + + + L Sbjct: 348 ----RQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQAL 403 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L+ +R+ + VLV KR A+ L +L +H D ER E +R + G Sbjct: 404 LTLLRE--NEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSG 461 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 VLV ++ GLD+P V +V D + + IGR R G AI + Sbjct: 462 ACQVLVATDVASRGLDIPNVGVVIQYDMP-----SNIDDYVHRIGRTGRAGKVGVAISFF 516 Query: 555 DKITPSMAKAIGETERRREKQQ 576 ++ ++ + + Sbjct: 517 NEKNRNIVDDLIPLLNETNQVI 538 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 62/391 (15%), Positives = 111/391 (28%), Gaps = 36/391 (9%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 + ++ E ++ F I Sbjct: 61 RSGYTHPTPIQAEAIPFALQG-RDLLLSAQTGSGKTAAFVIPVLDRL------------- 106 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L + + T+ + +++ + F G P Sbjct: 107 ----------SRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPY 156 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L ++V + I G L E L + Sbjct: 157 NGQITALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILR 216 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLLS 437 + QTI SAT + + + ++ + + LL Sbjct: 217 AAPIDRQTIMCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKVYYCDDFDHKNRLLD 276 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +I + E++++ TKR E L + L+E G + +LH D+ +R I++DLR G+ Sbjct: 277 KIVCHKDM-EQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKC 335 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+P +S V D R + IGR R G AI Sbjct: 336 KILVATDVAARGLDVPALSHVINYDLP-----RQTEDYVHRIGRCGRAGRTGVAISLCSM 390 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AI R+ + Sbjct: 391 DDRPQLNAINRYLDRKMEASVIEGMEPKKTY 421 >UniRef50_D2LSA7 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSA7_BACS4 Length = 528 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 122/407 (29%), Gaps = 25/407 (6%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 ++ ++ + + + I + + L + Sbjct: 8 QISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEKVT-- 65 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 +++ ++ LT + +++ EL S + G+ L Sbjct: 66 --SDRQVQSLILTPTRELAIQVAGELQKLSKF--KRSQILPIYGGQSIGHQIKALKRGVQ 121 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV + + + L E L K + QT+ S Sbjct: 122 VVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTMLFS 181 Query: 394 ATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + S + + ++ + ++D L I Sbjct: 182 ATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVIDSE--TI 239 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ TK+ +LTE L+ G LH D+ +R +++ R + L+ ++ Sbjct: 240 DLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFLIATDVA 299 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ VS V D + S + IGR R G A+ ++I Sbjct: 300 ARGIDVENVSHVINYDIP-----QDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRSI 354 Query: 566 GETERRREKQQKYNEEHGITPQG---LNKKVVDILALGQNIAKTKAK 609 + Q+ + + +++D++ ++ A Sbjct: 355 EAEIKMTIPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDD 401 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 107/402 (26%), Gaps = 47/402 (11%) Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE- 254 R + I P + + + + F + Sbjct: 176 RAQYIHPTPVQKYALPI--------IAAKRDLMACAQTGSGKTAAFLLPILNMLFEDNHC 227 Query: 255 ----RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L + E ++ + G + Sbjct: 228 ENSDASALSCAVCPLALILAPTRELSSQIYDEARK-FSYRSNIKPCVVYGGASILAQIRE 286 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + + + + + L Sbjct: 287 LSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADR-----------------MLDM 329 Query: 371 ALDNRPLKFEEFEAL----APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPI 422 + + + E + QT+ SAT + + + G + + I Sbjct: 330 GFEPQIRRIVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENI 389 Query: 423 IEVR--PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I+ D+L + Q + LV TKR A+ L ++L + V +H D Sbjct: 390 IQEVLNVADKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDR 449 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER ++ R G +L+ + GLD+P V V D + IG Sbjct: 450 PQTEREHALQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLP-----SDIEEYVHRIG 504 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 R R G A + + ++ + + E R ++ E Sbjct: 505 RTGRMGQPGSATSFFSEKNQNVVRDLVELLRESKQAVPPWLE 546 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 59/387 (15%), Positives = 111/387 (28%), Gaps = 41/387 (10%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 A + ++ + F + H + ++ + Sbjct: 1031 SAYTVPTPIQKVSIP-VISAGRDLMACAQTGSGKTAAFLLPILNHIL---DKGYELEIGK 1086 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + L E ++ + + G +N S P Sbjct: 1087 PQAIIMSPTRELAVQIFNEARK-FAHNSYLKITIVYGGTSVKYQNESITKGCHILIATPG 1145 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF- 382 L D++ + D V + + M L K Sbjct: 1146 RLLDFVERTFITFEDTRFVVLDEADRM-----------------LDMGFSESMRKIITHP 1188 Query: 383 -EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 QT+ SAT +G + D V G + I + Sbjct: 1189 TMRKEHQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKFNKRAK 1248 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ +R A +V TKR A+ L + E +H D +R + +R+ + Sbjct: 1249 LMEILRDGADG---TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKS 1305 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ VL+ ++ GLD+ VS V D + + IGR R NG+A + Sbjct: 1306 GKMKVLIATSVASRGLDIKNVSHVINYDMP-----STIDDYVHRIGRTGRVGNNGRATSF 1360 Query: 554 GD-KITPSMAKAIGETERRREKQQKYN 579 D ++A + + ++ Sbjct: 1361 FDSDKDRALAGDLVKILEGSGQEVPDF 1387 >UniRef50_D2QWU0 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWU0_9PLAN Length = 598 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 51/384 (13%), Positives = 102/384 (26%), Gaps = 35/384 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ A++++ + F + + + + + Sbjct: 21 YTEPTAIQLQAIPPAI-AGRDLQGCAQTGTGKTAAFALPLLDRLIKNPRQ-GKLRGRLPR 78 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L +R + + + G + P L Sbjct: 79 ALVLSPTRELAGQIHDSVRRYGRHAMQNSLTI-YGGVSQVPQVKGLNAGQDVLIATPGRL 137 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + L E L + Sbjct: 138 CDLMQQGYI-----------------NLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQ 180 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + D V + + P + + L S Sbjct: 181 QKQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASV 240 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +++ R +V TK LE+ G +V +H + R + + G Sbjct: 241 LKRE--EVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQ 298 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ GLD+ VS V D + + IGR R G AI + D Sbjct: 299 VLVATDVAARGLDVTGVSHVINYDLPM-----EPETYVHRIGRTGRAGKSGIAISFCDDE 353 Query: 558 TPSMAKAIGETERRREKQQKYNEE 581 + + + ++ + + Sbjct: 354 QRGLLRDVQRILGKKIPVENEMPD 377 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 108/404 (26%), Gaps = 47/404 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY----------VTPRER 255 + ++ +E+ F + + Sbjct: 241 YTRPTPVQKHAIPIIIEK-RDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENG 299 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ L L EE R + G G + Sbjct: 300 RYGRRKQFPLSLVLAPTRELAVQI-YEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGC 358 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D + + + ++ + + L + + Sbjct: 359 HLLVATPGRLVDMMERGKIGLDFCKYLVLDEA-----------------DRMLDMGFEPQ 401 Query: 376 PLKFEEF----EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIE 424 + E QT+ SAT + + + + G + + Sbjct: 402 IRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVV 461 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + LL + + LV TK+ A+ L ++L G +H D + Sbjct: 462 WVEEMDKRSFLLD-LLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRD 520 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R E + R G+ +LV + GLD+ V V D + IGR R Sbjct: 521 REEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP-----SDIEEYVHRIGRTGR 575 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 N G A + ++ ++ K + + +++ E+ Q Sbjct: 576 VGNLGLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENMAYEQ 619 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 55/421 (13%), Positives = 111/421 (26%), Gaps = 17/421 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L DE + + + I + + Sbjct: 8 QLNLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVELID 67 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + T+ G P L Sbjct: 68 TE--ELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKRG 125 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + + + D + L E L + QTI Sbjct: 126 ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTIL 185 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINER 448 SAT L + D + IE + + + + ++ Sbjct: 186 FSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245 Query: 449 V--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TKRM +++T +L+ G LH D+ +R +++ + G +LV ++ Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD-KITPSMAKA 564 G+D+ V V D +++ + IGR R GKA+ + Sbjct: 306 ARGIDVNNVDYVINYDVP-----QNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELYH 360 Query: 565 IGETERRREKQQKYNEEHGITP--QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 I + K++ I ++ K + P Sbjct: 361 IVRMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKGYNPTT 420 Query: 623 V 623 + Sbjct: 421 I 421 >UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Magnaporthe grisea RepID=PRP28_MAGGR Length = 674 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 109/383 (28%), Gaps = 22/383 (5%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ ++ ++ F + ++ E Sbjct: 277 YTEPTPVQRAAIPIALQ-CRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPY 335 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + R F + + + ++ P L Sbjct: 336 ALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRL 395 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR--------PL 377 D L L++ S+V + + M G + + + Sbjct: 396 VDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAALPPSNGKPDDRDAEDPNIMS 455 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVAT 430 KF QT+ SAT + + + G + + Sbjct: 456 KFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIGTIGEAVDTVEQQAMWVVSED 515 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + L + + V+V TK + + + L+ LH + +R ++ Sbjct: 516 ERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAALQ 575 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G +VLV ++ GLD+P+VSLV + + IGR R G Sbjct: 576 SFRDGRTNVLVATDVAARGLDIPDVSLVINFNM-----AGTIEVYTHRIGRTGRAGKEGM 630 Query: 550 AILYGDKITPSMAKAIGETERRR 572 AI + + + + + Sbjct: 631 AITFCGPEDHGVLYHLKQIMSKS 653 >UniRef50_Q24I45 DEAD/DEAH box helicase family protein n=2 Tax=Tetrahymena thermophila RepID=Q24I45_TETTH Length = 713 Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats. Identities = 51/386 (13%), Positives = 113/386 (29%), Gaps = 39/386 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ F V + F + H + L Sbjct: 123 KPSPIQSLAFP-VVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQP---TVKKGDGPIVL 178 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E +R + ++ G + P L D Sbjct: 179 VLAPTRELAMQIERESERFGKSSK-LKCACIYGGADKYSQRALLQQGVDVVIATPGRLID 237 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L ++ + +++ + + L + + K Sbjct: 238 FLESETTTLRRVTYLVLDEADR-----------------MLDMGFEIQIRKILGQIRPDR 280 Query: 388 QTIYVSATPGNYELEKSGGDVVD-QVVRPTG--------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + V G + I+ V + +++ L+ + Sbjct: 281 QTLMFSATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQ 340 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++VL+ TK+ E ++ L + G + +H D +R ++ + GE Sbjct: 341 L-DCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECR 399 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +L+ ++ GLD+ +VS V D + + IGR R G A+ + Sbjct: 400 ILIATDVASRGLDVKDVSHVFNYDFP-----KVMEDYVHRIGRTGRAGAYGCAVSFLTFE 454 Query: 558 TPSMA-KAIGETERRREKQQKYNEEH 582 + + +++ + Sbjct: 455 DDKKISREYVQMLHDAKQEIPIDLLD 480 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 114/667 (17%), Positives = 217/667 (32%), Gaps = 67/667 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAH---QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 +++ + E Q + G++GS +A + RP ++ + Sbjct: 4 LVDIIPYENSLQNIIEDFSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDN 63 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A LY ++ + V P + + A + + R Sbjct: 64 YRAESLYSDLVTLLDKEQVY-------------IYPEHQVYPFELAWQSRDVNNERAQVL 110 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVG-MIIDQRAILRRLAELQYARND 185 +AML ++ V + S+ + P +K +L VG + I +L L Y Sbjct: 111 QAMLSKKSAVYIFSLKSAKEKLSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTS 170 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q+G F RG +ID+FP S+ + +R+E FD+E+E + FD T + + + P Sbjct: 171 MVEQKGQFSHRGGIIDVFPVASE-LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGP 229 Query: 246 KTHYVTPRER-IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + V + QA+ ++ E ++ L+++ + L +R DL + Sbjct: 230 GSQLVIGDNTNLSQALNQLTREFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLP 289 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Y + + T+ D+LP + L VDE + E+L+E Sbjct: 290 HFHRYLSYFYP----KNYGTIIDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEE 345 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVV-RPTGLLDPI 422 G LP N E+ + P SA + + + Sbjct: 346 GKILP-GESNLFYSIEDVLSGNPFDTIYSA-----------NFLRQNPFENVSQATNMSV 393 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + Q D L E++Q N R+++ + T A L E L++ + Sbjct: 394 KSMNQFYGQWDFFLKEMKQWMNNNYRIILFSPTPESARTLYENLKKEEIGATIVEKGNTK 453 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E V++ + L+ G + E L I D G + + Sbjct: 454 TE------------NQVVIAVGDLKSGFILQESKLAVITYGDLWGHQKKKIR-------- 493 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 +R + + + KY + GL K + I G + Sbjct: 494 SRKRDKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGND 553 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 P + D + + + K++ L Q + ++ + L Sbjct: 554 SL---------YVPTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDL 604 Query: 663 HQLRELF 669 +L Sbjct: 605 LKLYAER 611 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 65/466 (13%), Positives = 133/466 (28%), Gaps = 42/466 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + E F++ D + P + + ++ Sbjct: 618 AFSQDTPWQKE-FEDYFPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMR 676 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + Q Q E + + + Sbjct: 677 AAFKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVK---- 732 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + ++ +H + + + + + + Sbjct: 733 --EEMKEGNAEIIIGTHKLLNKSVKFRDLGLLIIDEE--------QRFGVQHKEKIKMLK 782 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRA 443 + ++ATP L S V D V T V L+ + + Sbjct: 783 KNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREI 842 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V V + + + + + +V H + + ++ D G++DVLV Sbjct: 843 SREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLV 902 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ GLD+ V+ + I +AD+ G + Q GR R+ + Sbjct: 903 STSIVEAGLDIQNVNTIIIYNADRMGLSQP----YQLRGRVGRSNRMAYAYLTYQKD--- 955 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + + +R K K E G G + D+ G + Sbjct: 956 -KVLTQEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNILGPEQHG-------HIM 1004 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 V DM K L+ I E+ EE +I+D ++ + Sbjct: 1005 AVGFDMYTKMLKDAIKEISQESQ------TQEETTKIQDDKTEVEK 1044 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats. Identities = 57/394 (14%), Positives = 112/394 (28%), Gaps = 38/394 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ + + + + F + V + + + Sbjct: 98 DSPTPIQCQGWPVAL-SGRDLVGIAQTGSGKTASFLLPA---IVHAKAQPSLKRGDGPIV 153 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + G + + S P L Sbjct: 154 LILVPTRELAQQVEKVAEDFCYSAG-FKSACLYGGASRTGQAEALGQSPEVVIATPGRLL 212 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L + + +++ + + L + + Sbjct: 213 DFLESRHTNMRRCTYLVLDEADR-----------------MLDMGFEPSIRRVVSQVRPD 255 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + D + G + +E+ + + LLS Sbjct: 256 RQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSL 315 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + N RVLV T TK+ ++L + L++ G +H D ER + R G Sbjct: 316 LNSF--DNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHIS 373 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 VLV ++ GLD+ +V + D I IGR R+ G A + Sbjct: 374 VLVATDVASRGLDINDVRYIINYDYP-----SQTEDYIHRIGRTGRSDKKGTAYTFFSAK 428 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 P +A+ + E + + + + Sbjct: 429 QPRLARELIEVLKEARQTIPDELFKIAEGYYVER 462 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 56/412 (13%), Positives = 113/412 (27%), Gaps = 50/412 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-------RERIVQ 258 ++ + F + + R Q Sbjct: 287 YDKPTPVQKYAIP-IILSGRDLMSCAQTGSGKTAAFLVPILNRMLEQGASMNPASNRPYQ 345 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ L L E ++ + G + + Sbjct: 346 RRKQYPLGLVLAPTRELATQIYEEAKK-FSYRSRMRPAVLYGGNNTSEQMRELDRGCHLI 404 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P L D + + + + + + + L + + Sbjct: 405 VATPGRLDDIINRGKIGLENLRFLVLDEADR-----------------MLDMGFEPQIRH 447 Query: 379 FEEFEAL----APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRP 427 E + QT+ SAT E + + + + G + I Sbjct: 448 IIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVN 507 Query: 428 VATQVDDLLSEIRQRAA------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + LL + + + L+ TK+ A+ L E+L ++ V +H D Sbjct: 508 ENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRS 567 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER + ++ R G+ +LV + GLD+P V V D + IGR Sbjct: 568 QREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLP-----SDVEEYVHRIGR 622 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK-YNEEHGITPQGLNK 591 R N G A + ++ ++ + E ++ + EE G + Sbjct: 623 TGRMGNLGIATSFFNEKNRNIVSDLVELLIETNQELPSFLEEMANDRYGGPR 674 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 113/406 (27%), Gaps = 46/406 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY-----VTPRERIVQAM 260 ++ + F + V P + Q Sbjct: 315 YDKPTPVQKHAIP-IIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYS 373 Query: 261 EEIKEELAARRKVLLENNKLL-EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L E + EE + + G + + Sbjct: 374 RRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIV 433 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D + + + + + + + L + + + Sbjct: 434 ATPGRLEDMITRGKVGLENIRFLVLDEADR-----------------MLDMGFEPQIRRI 476 Query: 380 EEFEAL----APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPV 428 E + QT+ SAT E + + + + G + I Sbjct: 477 VEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYE 536 Query: 429 ATQVDDLLSEIRQRAA-----INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + LL + + L+ TK+ A+ L E+L + V +H D Sbjct: 537 PDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQK 596 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E +R R G+ +LV + GLD+P V V D + IGR Sbjct: 597 EREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLP-----SDVEEYVHRIGRTG 651 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 R N G A + ++ ++ + E +++ E + +G Sbjct: 652 RMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMSSDRG 697 >UniRef50_Q0K893 ATP-dependent RNA helicase n=129 Tax=Proteobacteria RepID=Q0K893_RALEH Length = 646 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 57/386 (14%), Positives = 106/386 (27%), Gaps = 21/386 (5%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F + + Sbjct: 78 YNTPTPVQAQAIPAFL-AGRDLLVSSQTGSGKTAAFMLPAIQRISEMPAPQRATEPAKR- 135 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + + T+ + E G + G P P Sbjct: 136 ----MKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASILGGMPYPKQ 191 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V + I G + E L + Sbjct: 192 LAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNATP 251 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + D ++ + + + LL Sbjct: 252 ATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHFTDDMSHKERLLD 311 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + A + ++ +V T TKR A+ L E L + G LH D+ R + LR G Sbjct: 312 HLLRDATL-KQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGNL 370 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ G+D+P+++ V D + + IGR R G AI + Sbjct: 371 RVLVATDVAARGIDVPDITHVVNFDLP-----KQAEDYVHRIGRTGRAGRSGTAINLVNH 425 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 K I +R Sbjct: 426 NDMFQWKRIERFTNQRIDASVIEGLE 451 >UniRef50_Q9NXZ2 Probable ATP-dependent RNA helicase DDX43 n=23 Tax=Euteleostomi RepID=DDX43_HUMAN Length = 648 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 50/411 (12%), Positives = 126/411 (30%), Gaps = 37/411 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + L + + H V ++ L Sbjct: 264 KPTPIQSQAWPIVLQGIDLIGV-AQTGTGKTLCYLMPGFIHLVLQP--SLKGQRNRPGML 320 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + + + + G + P L D Sbjct: 321 VLTPTRELALQVEGECCKYS--YKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND 378 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ + + + +++ + + L + + +K Sbjct: 379 LQMSNFVNLKNITYLVLDEADK-----------------MLDMGFEPQIMKILLDVRPDR 421 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + + ++ G + I V + + + + Sbjct: 422 QTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFL 481 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++ + +V+V K +A+ L+ L V LH D + +R + + + + G+ + Sbjct: 482 QSMSSTD-KVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +L GLD+ +V+ V D R+ + IGR R G +I + Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFP-----RNIEEYVHRIGRTGRAGRTGVSITTLTRND 595 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +A + R + +++ ++ + K Sbjct: 596 WRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERPQGRPKK 646 >UniRef50_C4LJP9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=C4LJP9_CORK4 Length = 823 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 101/347 (29%), Gaps = 16/347 (4%) Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + Q A L+ ++ + + T+ + + + Sbjct: 195 VGLAQTGTGKTAAFALPILSRLDRSQKKPQALVLSPTRELALQVADAFQEFADHLGGVHV 254 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSAL 372 G+ L +VV I + + L E L Sbjct: 255 LPIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDHLERGSLDLSELKYLVLDEADEMLNMGF 314 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEV 425 + QT SAT S + D + + Sbjct: 315 QEDVERILADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKSQQRTADNIHQQYLL 374 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++D L + + +++ TK+ E+L E L G ++ D+ +R Sbjct: 375 VNHHYKLDALTRIL--EVTEFDAMIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQR 432 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + LR G D+LV ++ GLD+ +S V D S + IGR R Sbjct: 433 ERTVDQLRDGRLDILVATDVAARGLDVERISHVVNYDIPH-----DTESYVHRIGRTGRA 487 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 G+AIL+ + ++I + ++ + + K Sbjct: 488 GRSGEAILFVTPRERRLLRSIERATKSSIEEMQLPTVDEVNETRKAK 534 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 113/435 (25%), Gaps = 69/435 (15%) Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + G +++ + Y + G + + Sbjct: 173 IRTFEQGQF--PEVLMKEFEKAGYTEPTNIQKIG------------------WPVAL--- 209 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + F + H + L L Sbjct: 210 -----SGRDMVGVAQTGSGKTVAFMLPAIIHVNAQAPLKHG---DGPVVLVLVPTRELAM 261 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 E R + + G + P L D+L + Sbjct: 262 QVQAEATRFGKMAG-LMNTAIFGGVPRYNQANDLRRGVEICIATPGRLLDFLETGVTNLK 320 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +++ + + L + + + QT SAT Sbjct: 321 RVTYLVLDEAD-----------------RMLDMGFEPQIRRIVSQIRPDRQTTMWSATWP 363 Query: 398 NYELEKSGGDVVD-QVVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + G + +EV + +++ R Sbjct: 364 KEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDWLKETYPKGSR 423 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++V T TK+ A+ LT + + +H D + ER I+ D + G +VLV ++ + Sbjct: 424 IIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVLVATDVAQR 483 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG-----DKITPSMA 562 GLD+ V V D ++ + IGR R G ++ + MA Sbjct: 484 GLDIKNVEWVVNYDMP-----KTVEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRVRMA 538 Query: 563 KAIGETERRREKQQK 577 K I + ++ Sbjct: 539 KDIVKCMEDVKQTPP 553 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 97/341 (28%), Gaps = 19/341 (5%) Query: 217 FDEEVER-LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F E+ + L + V + + Sbjct: 495 FPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAFILLRQCR 554 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 N + + T+ + + G + + G P L + Sbjct: 555 NNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRV-SCTCLYGGAPKGPQLKELTRGADI 613 Query: 336 VVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + L E L + + K QT+ +A Sbjct: 614 VVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTA 673 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAI 445 T + + +V+ V G +D +EV P + L +I + Sbjct: 674 TWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRL-GQILRAQER 732 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V++ TKR+ + L + +H D ER ++ R G+ +LV ++ Sbjct: 733 GSKVIIFCSTKRLCDQLARSIGHQ-FGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDV 791 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 GLD+ ++ +V D + IGR R Sbjct: 792 AARGLDIKDIRVVINYDFPT-----GIEDYVHRIGRTGRAG 827 >UniRef50_B1VFV5 ATP-dependent RNA helicase n=35 Tax=cellular organisms RepID=B1VFV5_CORU7 Length = 778 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 60/397 (15%), Positives = 113/397 (28%), Gaps = 18/397 (4%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR--ERIVQAMEEIKEELAARRKVL 274 F + +FD + + + + Q A Sbjct: 133 FGDLGLSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSR 192 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L + + T+ + E + + G+P L Sbjct: 193 LNLKSRKPQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV I + R L E L + E Q S Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + S + ++ + ++D L + Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRIL--EVTDF 370 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +++ TK E+L E L G ++ DI +R + L+ G D+LV ++ Sbjct: 371 DAMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 430 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ ++ V D R S + IGR R G+A+L+ M K+I Sbjct: 431 ARGLDVERITHVFNYDIP-----RDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSI 485 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + R + + + K ++ ++ Sbjct: 486 ERATKSRLNEIELPSVDQVNEARKAKFNRELTKNLED 522 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 119/393 (30%), Gaps = 38/393 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + V + + + H Sbjct: 114 FTEPSPIQAQAWP-VVLGGRDLVGIAQTGSGKTLAYVLPAAIHMSDQ------------- 159 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + + T+ ++ ++++ Y + + G Sbjct: 160 -----PQPERDEG---PIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQ 211 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + + + + R L E L + + K + Sbjct: 212 IARLQGGAHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTR 271 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + + + D V G + ++ V + + LL Sbjct: 272 PDRQTVMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLL 331 Query: 437 SEIRQRAAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +R+ A +R L+ TK + + L ++G R H D+ +R + R G Sbjct: 332 ETLREINAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSG 391 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + +LV ++ GLD+ ++ V D + S + IGR R+ G AI Sbjct: 392 KTPILVATDVAARGLDVSDIKYVINYDYP-----DTSESYVHRIGRTGRSNRSGTAITLF 446 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AK + + +++ + Q Sbjct: 447 TPDNAGQAKQLVSVLQEAKQEVNPELLELVDRQ 479 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 53/391 (13%), Positives = 108/391 (27%), Gaps = 29/391 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ F + + + + Sbjct: 200 YTRPTPVQKHAIP-IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG--------EA 250 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A + K + T+ + E + R G Sbjct: 251 LRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRP-CVVYGGADIGQQ 309 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEF-- 382 L L+V + + D + L E L + + + E Sbjct: 310 IRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDT 369 Query: 383 EALA--PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 T+ SAT + + + + G + + + + Sbjct: 370 MPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS 429 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LL + + LV TK+ A+ L ++L G +H D +R E + R Sbjct: 430 FLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 488 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ +LV + GLD+ V V D + IGR R N G A Sbjct: 489 SGKSPILVATAVAARGLDISNVKHVINFDLP-----SDIEEYVHRIGRTGRVGNLGLATS 543 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + ++ ++ K + + +++ E+ Sbjct: 544 FFNERNINITKDLLDLLVEAKQEVPSWLENM 574 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 280 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 102/665 (15%), Positives = 217/665 (32%), Gaps = 70/665 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + S ++ + + L E G + + G++G+ K IA + ++ +V+ N Sbjct: 1 MKSIITEYINEDKRYQELNEVF--GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A +L ++ +F ++ + P D E+ ++ + R+ Sbjct: 59 LYQADKLESDLLQFVEDSEIYK-------------YPMQDIMTEEFSTQSPQFMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + + ++ + P D++ L L VG ID L +L + Y R Sbjct: 106 LTALAQEERGLFIVPLNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG ++DI+P +R+E FD EV+ + FD + + I I Sbjct: 166 VVSHIGEFSLRGGIVDIYPLIGK--PVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + Y+ + + ++K+ + L + + +L Sbjct: 224 ASDYIITEDVLKHTKHKLKQAYE----DTRPKIEKSVRNELKETYESF-----QLFEAEM 274 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ E P T+ DY D ++ VDE + + + L+E G Sbjct: 275 FDHQVLRRLVAFMYEQPATIMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQNLIESG 334 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + FE T + T + + + + Sbjct: 335 KGFIDQSFLQYEGFENLLKPFAVTYFTLFTATMPVQ------LNEIIKFSCKPVQQFY-- 386 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 Q D + SE ++ + ++V T+ E + L E R Sbjct: 387 ----GQYDIMRSEFQRFIQNDYTIVVLAETETKKERIQSMLNEMHIPTFI----DTPSRR 438 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E G + + L EG ++P + LV + + + + ++ Sbjct: 439 NE-------GGSAI-ITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTL----T 486 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K Y D + R + G++K + + G + Sbjct: 487 NAEKIKSYQDLKVGDYVVHVHHGVGRYLG------VETLEVGGVHKDYIKLQYKGTDQL- 539 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D V ++ + K+++L G + + + + D+L +L Sbjct: 540 --------FVPVDQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMADELIEL 591 Query: 666 RELFI 670 + Sbjct: 592 YKARE 596 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 70/480 (14%), Positives = 145/480 (30%), Gaps = 42/480 (8%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVS--TIPRFTIYPKTHYVTPRERIVQAM 260 E D E++ P + + P + + Sbjct: 597 MSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTE 656 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 ++ A + + Q + +E M + ++ SRF + + E Sbjct: 657 VAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF--PIEVQLISRFRTTKEVKE 714 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + L + + +V +H + + + R + Sbjct: 715 TK----EGLKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEE--------QRFGVRHKERI 762 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEI 439 + + ++ATP L S V D V T + V Q + + + Sbjct: 763 KSLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEAL 822 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V + + E L+ H ++ + E + E+ Sbjct: 823 ERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEY 882 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 D++V ++ G+D+P + + I DAD+ G + L Q GR R+ + Sbjct: 883 DIIVTTTIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPT 938 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 K + ET R + K E G G + D+ G K + Sbjct: 939 N----KVLSETAEDRLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF----- 986 Query: 618 VEPDNVPMDMSPKALQQKIHELE--GLMMQHAQNLEFE---EAAQIRDQLHQLRELFIAA 672 D+V D+ + L++ ++E Q A +E E +A + + + Sbjct: 987 --IDSVGFDLYSQMLEEAVNEKRGIKAEKQDAPEIEIELNIDAYLPAEYIPNEQSKIEIY 1044 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 280 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 117/448 (26%), Gaps = 67/448 (14%) Query: 146 YGLGDPDL-YLKMMLHLTVGMIIDQ-RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF 203 Y ++ + + L + + + + Sbjct: 335 YEKIPVEVTGRGAPASIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKY------------- 381 Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM-EE 262 I + V F + T + + Sbjct: 382 -----SIPI--------VMSGRDLMACAQTGSGKTAAFLLPVLTGMMKNGLTGSAFSDVQ 428 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L L + ++ ++ G G + P Sbjct: 429 EPQALVVAPTRELALQIFNDARK-FSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTP 487 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D + + + ++ + + M L K Sbjct: 488 GRLIDVINKGKISLAKLKYLILDEADRM-----------------LDMGFGPDIKKIVHE 530 Query: 383 E----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQ 431 QT+ SAT + +G + D + G + + Sbjct: 531 LGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQK 590 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L + + A + LV KR A+ L YL E G +H D ER E +RD Sbjct: 591 RQKLCDILSESGAD--KTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRD 648 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G+ +L+ ++ GLD+P V V D +S + IGR R GKA Sbjct: 649 FKQGKAPILIATSVAARGLDIPNVKHVINYDLP-----QSIDEYVHRIGRTGRCGNLGKA 703 Query: 551 ILYGDKI-TPSMAKAIGETERRREKQQK 577 + + S+AK + ++ Sbjct: 704 TSFFSEDGDGSLAKPLMRILVDAQQNIP 731 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 280 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 114/416 (27%), Gaps = 26/416 (6%) Query: 217 FDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KV 273 FDE++ T + + + + + Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 LE + + ++ E Y+ G L Sbjct: 320 ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA--YNLRSVAVYGGGSMWEQAKALQEGA 377 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + R E + + QT+ Sbjct: 378 EIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLF 437 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + ++D + G + I+E+ + L+ Sbjct: 438 SATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTS 497 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + VL+ K AE+L L++ G + LH D+D ER ++I D + + VLV ++ Sbjct: 498 SGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDV 557 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 GLD+P + V D R + IGR R G A + A Sbjct: 558 AARGLDIPSIKTVINYDV-----ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 612 Query: 565 IGETERRREKQQ-KYNEEHGITPQGLNKKV------VDILALGQNIAKTKAKGRGK 613 + + K + + K + G + + G G Sbjct: 613 LVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGS 668 >UniRef50_C6VX00 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VX00_DYAFD Length = 590 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 57/390 (14%), Positives = 121/390 (31%), Gaps = 16/390 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + ++ L + + + + + + Sbjct: 12 LGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIP---VLER 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + ++ ++ L + +++ ELG S + G+ L Sbjct: 69 IDTSSNAVQALILCPTRELAVQVSEELGRLSKF-MRGVRIEAIYGGDSIDRQIRSLKKGV 127 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + D R L E L QTI Sbjct: 128 HIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILF 187 Query: 393 SATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAAIN--E 447 SAT + + + D + L + IE + + + + ++ + Sbjct: 188 SATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIK 247 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +LV TKR +++ E L+ G +H D+ +R ++ + G +LV ++ Sbjct: 248 SLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAA 307 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 G+D+ + V D E + IGR R +GKA + K+I Sbjct: 308 RGIDVSGLDGVINYDIPM-----DEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIE 362 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + + ++ I + V +I Sbjct: 363 SYTKVKIEKGVIPSFEDIVGVRKARFVENI 392 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 113/663 (17%), Positives = 230/663 (34%), Gaps = 66/663 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +Q ++L + + G Q + G++GS +T +A ++ Q+P + + + + Sbjct: 10 LTNFIEQSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQV 68 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ P + V P + + A+ + + R+ A A+ Sbjct: 69 EELADDLANLLPPDRVYQ-------------FPVEEVLAAEVATSSPNYRLQRVQALDAL 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 +R VVV SV+ + P+ + + L + VG +D ++L+ + Y + Sbjct: 116 DSQRPAVVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLR 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +ID++ +D +R++LFD EV+ L FD T + V I P T Sbjct: 176 PGDFAIRGSIIDVYALNTD-NPVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDL 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + P + +K++ + K L++ Q++ R L + E + + + Sbjct: 235 ILPPAEFSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEF 293 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 G +L DYL ADG L +D+ + G + D+ E V+Y + Sbjct: 294 -----GDLVYPTRHSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKYHQLVS 348 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + Q G L S V + + Sbjct: 349 VPSLSNEFAKLVKADQHAQLFGALFKKGAGNLRFSQL-----VEITSRPMQR------FF 397 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ L +E+++ + +++ + + L + G V Sbjct: 398 GQMPLLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPVI-----------ETAA 446 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 L++ ++ L G +MP LV I + + ++ R + A K Sbjct: 447 DQLQVNTVQLVAAS--LNNGFEMPAAGLVVITEGELFKQVKKRR---HRAQKLANAERIK 501 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + K ++ + G+++ + I Sbjct: 502 SYT--------DLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQI----- 548 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + + V +S ++ +I+ L G + + I D+L L Sbjct: 549 ----FVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKR 604 Query: 670 IAA 672 AA Sbjct: 605 EAA 607 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 65/449 (14%), Positives = 126/449 (28%), Gaps = 38/449 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L P + + ++ A + Sbjct: 633 DQLRSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTVLAQ 692 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + + + + + L A + +V +H + + Sbjct: 693 QHFDTLSKRFAGFPVKIALMSRFKTN------QELKETDAGLAAGSIDIVVGTHRILSKD 746 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + +G + + + ++ATP L S Sbjct: 747 VQFRDLGLVIVDEEQRFGVKHKER--------LKELKNNVDVLTLTATPIPRTLNMSMLG 798 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYL 466 V D V T V Q + + I + +V E+ L Sbjct: 799 VRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGGQVYYLHNRVSDIEETVMKL 858 Query: 467 EEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + Y+H + E ++ D G +DVLV +++ G+D+P V+ + + +AD Sbjct: 859 QALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENAD 918 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R+ + + K + E +R + E G Sbjct: 919 HLGLAQ----LYQIRGRIGRSNRVAYAYFMYQPN----KVLTELGEKRLAAIRDFTELG- 969 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G K + D+V D+ L + + +G Sbjct: 970 --SGFKIAMRDLAIRGAGNILGKQQHGF-------IDSVGYDLYSSMLNEAVARKQGKKR 1020 Query: 645 QHAQNLEFE---EAAQIRDQLHQLRELFI 670 + E E EA ++ R+ Sbjct: 1021 AARADAEVELGVEAYLPDSYVNDQRQKIE 1049 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 52/444 (11%), Positives = 121/444 (27%), Gaps = 31/444 (6%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E + + + I I Q ++ + Sbjct: 12 EIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIPILETIDESSRN 71 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + E + G+ L +VV Sbjct: 72 TQALILAPTRELAIQVAEEIDSIKGSKR-LNVFPVYGGQSIDRQIRELKRGVQIVVGTPG 130 Query: 342 VTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + I + + L E L + + + + + + SAT + Sbjct: 131 RILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRMLLFSATLPDSI 190 Query: 401 LEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 ++ + + + + D + + L I L+ Sbjct: 191 MKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEKEFYG--LIFC 248 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK ++++ L E G LH D+ +R + + + + +VLV ++ G+D+ Sbjct: 249 KTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVATDVAARGIDIN 308 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 +++ V D ++ S + IGR R G A+ + + K I + Sbjct: 309 DLTHVVNYDIP-----QNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFKYIQKIANTE 363 Query: 573 EKQQKYNEEHGITPQGLNK------------KVVDILALGQNIAK--TKAKGRGKSRPIV 618 ++++ + I K K D + + + + Sbjct: 364 IRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQEVLSAVLKYA 423 Query: 619 EPDNVPMDMSPKALQQKIHELEGL 642 D + + + E Sbjct: 424 LKDELSESNYKRIGKPANREGRDR 447 >UniRef50_Q126W4 DEAD/DEAH box helicase-like n=153 Tax=Bacteria RepID=Q126W4_POLSJ Length = 579 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 57/438 (13%), Positives = 114/438 (26%), Gaps = 35/438 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + L FT+ T + Sbjct: 21 YDTPTPIQAQAIPAVLAGSDLLG-GAQTGTGKTAAFTLPMLQRLSTEPRLTNRRGVNAVR 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E G + G Sbjct: 80 ALIMTPTRELAAQ------------------VEESVRTYGKYLDLTSMVMFGGVG-MGAQ 120 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D L ++V + G + + L E L + K Sbjct: 121 IDKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVP 180 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSE 438 Q++ SAT + E + G + D + + ++ ++ LL+ Sbjct: 181 KHKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTH 240 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I +VLV T TK A ++ E+L ++G LH + R + ++ + G Sbjct: 241 IINE-HNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIR 299 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 LV ++ G+D+ E+ V + + IGR R +G+A+ Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNV-----SEDYVHRIGRTGRAGNSGEAVSLVCLD 354 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLN-KKVVDILALGQNIAKTKAKGRGKSRP 616 + I ++ ++ + + G + Sbjct: 355 EEGFMQDIERFTKQNIEKVLVPGFEAEPGERAEPLAMGRQTIWGGLGKPPSRDVMQAAAK 414 Query: 617 IVEPDNVPMDMSPKALQQ 634 + + K Q Sbjct: 415 AARSEMMQRIRDTKGAQP 432 >UniRef50_C4ZJL9 DEAD/DEAH box helicase domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJL9_THASP Length = 545 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 55/457 (12%), Positives = 118/457 (25%), Gaps = 45/457 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + FT+ Sbjct: 21 YTEPTPIQRQAIPIVI-AGKDVMGGAQTGTGKTAGFTLPLLHRIARHANTSTSPARHQTR 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E + + + G + P L Sbjct: 80 ALILAPTRELAMQ-VFESVKTYSKHLPLRSVCVYGGVDIRPQQAELRRGIEIVIATPGRL 138 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + + + + L + Sbjct: 139 LDHLEQKSINLSQVEVLVLDEADR-----------------MLDMGFIPDIKRILALLPK 181 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQ---VDDLLSEI 439 Q++ SAT + + + + + + I +LL+ + Sbjct: 182 QRQSLLFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAHL 241 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + + LV TK M L YLE G +H D +R + + + G+ V Sbjct: 242 LRH-KPDTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRV 300 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ GLD+ E+ V + + + IGR R +G AI Sbjct: 301 LVATDVAARGLDIDELPFVINFELPH-----TAEDYVHRIGRTGRAGHHGYAISLVSSEE 355 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 I + + + Q++ + + G +GR + Sbjct: 356 KHWLSEIEKLIKLQIPQERVPGFDPDP------DFHEAGSRGH-------RGRRPAAAAA 402 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + + ++ + + A+ E A Sbjct: 403 DTEAQAPAARSGGRERGVERSAEARREPAREREGLRA 439 >UniRef50_D2QD85 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QD85_9SPHI Length = 643 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 54/418 (12%), Positives = 125/418 (29%), Gaps = 16/418 (3%) Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 + EV+ + + + + E ++ ++ ++ + I Sbjct: 9 VEEPKAAAAVAEVVTPKADPNQLLFSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDG 68 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + L++ + + T+ + E Sbjct: 69 RDVIGQAQTGTGK----TAAFGIPALDLIDVQDRSVQTLILCPTRELALQVAEEIKKLAK 124 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 + G+ L + +V+ + + + + + L E Sbjct: 125 YKRGIRIEAIYGGDSIERQIRSLKSGVHIVIGTPGRVMDHMERNTLKLNNVKMMILDEAD 184 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--- 422 L E QTI SAT ++ + D V+ + Sbjct: 185 EMLDMGFREDIESILEEMPEERQTILFSATMSKPIMQITQKFQKDPVLVKVVKKELTNVN 244 Query: 423 IEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 IE + + + + + + +LV TKR +++ E L+ G + LH D+ Sbjct: 245 IEQVYFEVKSKAKVEVMCRLIDMYDLKLLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDL 304 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R ++ R G ++LV ++ G+D+ +V V D E + IG Sbjct: 305 RQAQRNNVMSKFRAGTTNILVATDVAARGIDVDDVDAVINFDIPL-----DEEYYVHRIG 359 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 R R G+A + + + I + + ++ I + + + Sbjct: 360 RTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVKVEKGVIPSFEDIVGVRKARFIEQLQ 417 >UniRef50_B9SM44 Dead box ATP-dependent RNA helicase, putative n=2 Tax=Magnoliophyta RepID=B9SM44_RICCO Length = 650 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 63/441 (14%), Positives = 125/441 (28%), Gaps = 39/441 (8%) Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G ID + + + P + A ++L + Sbjct: 149 GDDIDSEQVFTEQESTGINFDAYEDIPVETSG-----ENVPPPVNTFA-EIDLGEALNLN 202 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR---------KVL 274 + + V + + + + + L Sbjct: 203 IRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMKMQGQSAQRPL 262 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + + T+ ++E + + G P L Sbjct: 263 RGARMVYPLALILSPTRELSMQIHEEARKFSYQTGV-KVVVAYGGAPINQQLRELERGVD 321 Query: 335 LVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----ALAPQT 389 ++V + + R L E L + + K E A QT Sbjct: 322 ILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRKIVEQNDMPRPGARQT 381 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQR 442 + SAT + + + + G + +E + + L+ + + Sbjct: 382 MLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQESDKRSHLMDLLHAQ 441 Query: 443 AAINER-----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 A + LV TK+ A+ L +L +G +H D ER + +R R G Sbjct: 442 RANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQQEREQALRSFRSGNT 501 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+P V+ V D + IGR R G A + ++ Sbjct: 502 PILVATDVAARGLDIPHVAHVVNFDLPN-----DIDDYVHRIGRTGRAGKSGLATAFFNE 556 Query: 557 ITPSMAKAIGETERRREKQQK 577 S+A A+ + + ++ Sbjct: 557 GNASLAMALADLMQESNQEVP 577 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats. Identities = 119/668 (17%), Positives = 225/668 (33%), Gaps = 73/668 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 AF + + E ++ G + K+ I ++ +++ + Sbjct: 2 KAFTEPLLSLAGFEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQ 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY E F E Y PS D + + R+ A K Sbjct: 61 KAKELYDEYSFFDKE---------------VVYYPSKDVLFYQSDIRGNLLTAERIRALK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A+ E+ V +V + A+ P + + +L L G ++D + I L + Y + Q Sbjct: 106 AIREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG ++D+FP +++ +R+EL+ +E++ + FD + + + I R +IYP Sbjct: 166 QTMGQFSVRGGILDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAA 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V E ++++K E L + K E R+T E EL +G++ Sbjct: 225 ELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + + G + DY D L+ DE Q + + G+ Sbjct: 285 AFLSYFFDERVG-----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNY---ELEKSGGDVVDQVVRPTGLLDPII 423 LP ++ + E L + A N + + Q Sbjct: 340 ILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANGLHQLGSYGIHCQS----------- 388 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V P + L+ ++++ RV++ + ++ A+ L+E + + G Y Sbjct: 389 -VSPYNNSFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYT------- 440 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +L G ++V +R G + P + I ++D G + ++ Sbjct: 441 --ENYDHELFEG--QIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRH------- 489 Query: 544 RNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G+ I + D Y + K + I G Sbjct: 490 RTYEGEKIQSFTDLSVGDYV------VHENHGLGIYRGIEKLEVDKKVKDYIKIEYQG-- 541 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 G + D + A + K+++L G +N QI L Sbjct: 542 -------GSNLYILATQLDMIQKYAGKDARKPKLNKLGGQEWTRTKNRVRGAVKQIAGDL 594 Query: 663 HQLRELFI 670 +L Sbjct: 595 VKLYAQRE 602 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 69/428 (16%), Positives = 125/428 (29%), Gaps = 35/428 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D + + + + + I+ A + Sbjct: 619 FEELFPFDETEDQILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQV 678 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + M + + R + L + + Sbjct: 679 AYLAPTTILAQQIYDTFSQRMKDFPVNVDLMCRFRS------AAEQKKTIEKLKKGEVDI 732 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + E + + + + ++ATP Sbjct: 733 IIGTHRILSKDVQFKDLGLL---VIDE-----EQRFGVTHKEKIKQMKVNVDVLTLTATP 784 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L S + D V +D + V D+L+ I + A N +V Sbjct: 785 IPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNK 844 Query: 456 KRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 R D+T L+E V + H + E I+ GE DVLV ++ GLD+ Sbjct: 845 VRDIADITAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDIS 904 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DAD G + L Q GR R+ + K + E +R Sbjct: 905 NVNTMIIHDADNMGLSQ----LYQLRGRVGRSNRTAYAFLMYRRN----KMLKEVAEKRL 956 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + G G + D+ G + + V D+ K L Sbjct: 957 AAIKEYSDLG---SGFKIAMRDLEIRGAGNLLGAEQSG-------HMEAVGYDLYCKMLS 1006 Query: 634 QKIHELEG 641 + + E +G Sbjct: 1007 EAVKEAKG 1014 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 58/450 (12%), Positives = 115/450 (25%), Gaps = 46/450 (10%) Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAE-LQYARNDQAFQRGTFRVRGEVIDI--FPAES 207 P Y + L I+ E + V++ S Sbjct: 101 PAEYSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYS 160 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA-------M 260 ++ + F + H + +V+ Sbjct: 161 KPTPVQKHSIP-TLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRR 219 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L L E + + ++ ++ + Sbjct: 220 TYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIA 279 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + ++ + + L + + K Sbjct: 280 TPGRLIDIIEQGFIGLAGCRYLVLDEADR-----------------MLDMGFEPQIRKIV 322 Query: 381 EF---EALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVA 429 A T SAT + + D + G ++ + Sbjct: 323 GQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEM 382 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + +L+ + + N VLV TKR A +L +L R +H D+ +ER + Sbjct: 383 EKRSNLMEILMNEHSEN-LVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 441 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R G+ +LV + GLD+P V V D + IGR R G Sbjct: 442 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLP-----GDSDEYVHRIGRTGRCGNLG 496 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKY 578 A + + + + + ++ Sbjct: 497 IATSFFNDKNRGIGRDLKNLIVESNQEVPE 526 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 118/356 (33%), Gaps = 19/356 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLE--NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 Q A +LE + K + L+ + +++ +E+ + + R Sbjct: 43 GQSQTGTGKTAAFAIPIIEMLEVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRT 102 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSA 371 ++ G+ L +VV + I R D+ R L E L Sbjct: 103 VAV-YGGQQISKQILELKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMG 161 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIE 424 E QT+ SAT LE + + V T ++ + Sbjct: 162 FREDIETVIEALPQQRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYY 221 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + + L+ I ++ TK+M ++LT L G LH D+ Sbjct: 222 VCPKEAKKEILMQLI--SMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEM 279 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R ++ + + G+ ++LV ++ G+D+ + +V D + + IGR R Sbjct: 280 RTGVMDNFKKGKINILVATDVAARGIDVDSMDVVFNYDLP-----QESEYYVHRIGRTGR 334 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 G A+ + + T R + Q+ + L+ D+ Sbjct: 335 AGKEGLAVTLITARQKYALRDLERTTRSKLTQKPLPSLEEVRKIRLDFLREDLEHR 390 >UniRef50_B4PSL1 GE25850 n=3 Tax=Sophophora RepID=B4PSL1_DROYA Length = 688 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 53/402 (13%), Positives = 123/402 (30%), Gaps = 39/402 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + F + H L Sbjct: 290 KPSPIQSQAWPILLQG-HDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG--TRGGANVL 346 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + + + G ++ P L D Sbjct: 347 VLAPTRELALQI--EMEVKKYSFRNMKAVCVYGGGDRRMQISDLERGAEIIICTPGRLND 404 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + A+ + V +++ + + M L + + K Sbjct: 405 LVQANVIDVSTITYLVLDEADRM-----------------LDMGFEPQIRKVMLDIRPDR 447 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSEI 439 QTI SAT + + + + G + +I++ + + Sbjct: 448 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSF 507 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + +++++ K A+DL+ L G + +H + D +R + I D++ G + Sbjct: 508 VRNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHI 567 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ GLD+ +++ V D R+ + +GR R G +I + + Sbjct: 568 LVATDVASRGLDIEDITHVINYDFP-----RNIEEYVHRVGRTGRAGRKGTSISFITRED 622 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 MAK + + + E++ + K + + A Sbjct: 623 WGMAKELIDILQEAEQEVP---DELHNMARRFKAMKEKRAAE 661 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 278 bits (710), Expect = 7e-73, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 111/394 (28%), Gaps = 26/394 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT---HYVTPRERIVQAMEE 262 + ++ +E F + + + Sbjct: 89 YTTPTPIQARAIPAALEG-RDLLLSAQTGSGKTAAFVLPILHQLSELQAKEKAAEKTASG 147 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + + + T+ + + G + G Sbjct: 148 KRG----------RQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAY 197 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L ++V + I L E L + E Sbjct: 198 SGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILE 257 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDLLS 437 QTI SAT + + D +D + + LL Sbjct: 258 ATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFDHKNKLLE 317 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + ++ T TKR +E++ E L++ + YLH D+ +R I+ DLR G+F Sbjct: 318 QLICDPERG-QAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKF 376 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D++V ++ GLD+P ++ V D R + IGR+ R G AI + Sbjct: 377 DIVVATDVAARGLDLPNITHVFNYDLP-----RQVEDYVHRIGRSGRAGRTGIAINLCSR 431 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 I +R + + + Sbjct: 432 DDRRQFGNIARYLKRDINEAQVEGLEPRFVEKFE 465 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 60/398 (15%), Positives = 105/398 (26%), Gaps = 41/398 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER----IVQAME 261 + ++ + + F I + + Sbjct: 231 YTRPTPVQRYAVP-IIMQRRDLMACAQTGSGKTAAFLIPLLSMMYQDGPGNSLSHSGYKK 289 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 E L L E ++ + G + Sbjct: 290 EYPVALILAPTRELAVQIYDEARK-FSYRSLVRPCVVYGGRDIRGQLQDISQGCNMLVAT 348 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D L + + ++ + + L + + K E Sbjct: 349 PGRLSDMLERCKIGLDCIRYLVLDEAD-----------------RMLDMGFEPQIRKIVE 391 Query: 382 FE----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVAT 430 QT+ SAT + + D + G + I Sbjct: 392 QTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENE 451 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + D LL + + +LV TKR A+ L +L G V +H D +R ++ Sbjct: 452 KRDHLLDILTD-IDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQ 510 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G +LV + GLD+P V V D + IGR R N G+ Sbjct: 511 SFREGSTPILVATRVAARGLDIPNVKFVINYDLPT-----DIEEYVHRIGRTGRVGNLGE 565 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 AI + ++AK + + + I Sbjct: 566 AISFYTDKNNNVAKELVDILLEANQIVPDWLRDKIGEA 603 >UniRef50_C8P265 DEAD/DEAH family ATP-dependent RNA helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P265_ERYRH Length = 594 Score = 277 bits (709), Expect = 8e-73, Method: Composition-based stats. Identities = 60/453 (13%), Positives = 129/453 (28%), Gaps = 22/453 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +EL +E V ++ + + + + + + + Sbjct: 22 LELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPM---LSL 78 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 +K + T+ + E ++ G P L Sbjct: 79 TQPGDKKRTNSLILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRGA 138 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I R D R L E L + F Q + Sbjct: 139 DIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFF 198 Query: 393 SATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT ++ S +V+ + I +VD + ++ Sbjct: 199 SATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTS 258 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ TK+M ++LT L + G LH D+ R ++ + G VL+ ++ Sbjct: 259 G--TMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDV 316 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ + +V D + + IGR R G AI + K Sbjct: 317 AARGIDVDSMDVVINYDIP-----QELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQ 371 Query: 565 IGETERRREKQQKYNEEHG---ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 I + + + L +++ Q A ++ + + Sbjct: 372 IERLSNSTIVETPLPTKEQLNDLMVDQLAREIRKWNDHEQGKLFNIAYEGLRNENFTQEE 431 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + ++ + + ++ + +N Sbjct: 432 IIVAFINKMISESNLEAIKVSKQKDVKNKGEIS 464 >UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE40_9ALVE Length = 695 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 52/391 (13%), Positives = 109/391 (27%), Gaps = 44/391 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP------RERIVQA 259 ++ + + I + + Sbjct: 227 FDRPTPVQKYSIP-TLTTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPDATSSGDYGR 285 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L L + E ++ T ++ G + Sbjct: 286 RKAYPITLILSPTRELASQIHEEARKFCFNTG-IRPVVVYGGADVRTQLRELERGCDILV 344 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D + + + + + M + + + Sbjct: 345 ATPGRLSDLMERFRVSLCQIKMLIFDEADRMLD-----------------MGFEPQIRRI 387 Query: 380 EEFE-----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRP 427 E E Q+ SAT + + + D + G + I+ Sbjct: 388 VEQEDMPSSRDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVD 447 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ DL + + LV TKR A+++ L +H D ER E Sbjct: 448 ENSKLRDLYRVL-EEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREE 506 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ + GE +LV ++ GLD+ V+LV D + + IGR R N Sbjct: 507 ALKAFKSGELPILVATDVAARGLDISHVNLVINYDLPN-----NIDDYVHRIGRTGRAGN 561 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQK 577 G AI + ++ + + + + +++ Sbjct: 562 LGTAIAFVNEGSKPILRDLWTLLEENKQEIP 592 >UniRef50_Q54QS3 Probable ATP-dependent RNA helicase ddx3 n=3 Tax=Eukaryota RepID=DDX3_DICDI Length = 712 Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats. Identities = 46/393 (11%), Positives = 97/393 (24%), Gaps = 43/393 (10%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-------RER 255 + ++ + + F + + + Sbjct: 264 HAKYTKPTPVQKSALP-IILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYK 322 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 L L E + ++ G + Sbjct: 323 PGVPRAACPRALVLAPTRELAQQIFDEANK-FSYGSPVSSVVIYGGAEVFHQINELDRGC 381 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 L D L + + ++ + + L + + Sbjct: 382 DILVATTGRLVDLLMRGRVSLSKIKYLVLDEADR-----------------MLDMGFEPQ 424 Query: 376 PLKFEEFEA----LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEV 425 + QT+ SAT + + + + G + IE Sbjct: 425 IRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEY 484 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + LL + + L+ TKR + LT +L + +H D+ ER Sbjct: 485 VVEEDKNSYLLDYLSGLKSDG-LCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPER 543 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ R LV ++ GL + V+LV D + IGR R Sbjct: 544 ENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPT-----DIHIYVHRIGRTGRA 598 Query: 546 V-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 G AI + ++ + + + + + Sbjct: 599 GKKGLAISFFNEKNKPVGAELLKLMKASNQDIP 631 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 110/670 (16%), Positives = 228/670 (34%), Gaps = 71/670 (10%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 + + E + + + G+ + K I + L V+A Sbjct: 2 TNTKTTLTKPLKKIEGMNKFINEFNRNKTGI-VGGIIEAAKGHLIYTLADFLDTCPFVIA 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 ++ A + ++ F V Y PS D + I + R+ Sbjct: 61 SSEEEAEVVKEDLAFLFGSENV-------------IYYPSRDILFYNADVHSNEIVKQRI 107 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 A A+++ + ++V ++ A+ P +++ + + +G +D +++ +L E Y R Sbjct: 108 EALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQIVIKIGDTVDLQSMSYQLIENGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F +RG ++DIF ++ +R+EL+D E++ + F P+T + + I R I Sbjct: 168 VGRVEVVGQFAIRGGIMDIFSPANN-TPIRMELWDTEIDSIRRFSPITQRTIDNIERAYI 226 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP + PRE++++A+ I++EL A VL E+ R+ + T D+E + Sbjct: 227 YPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGAKSAANRIKENTNEDIESIVNGLNI 286 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 Y+ F +LFDYL + + + ++ ++ ++ +E Sbjct: 287 ETQVLYAPFCDMET-----ASLFDYLEYKKTIFITDIKKCKDKLLRVFLEYEESVKSRLE 341 Query: 364 YGFRLPS--ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 YG LPS + ++ + + + ++ Sbjct: 342 YGHMLPSMVKFIFNREEIIAKVFEKNYIGFMPFLASDDMAT-----TKNILEIRLNEINS 396 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + Q ++Q A + + TK A + E LEE D+ Sbjct: 397 NYKGLKIFEQD------LKQYKAEGKATVFLAGTKSKAAHVAEILEEQKIYTAL--GDLT 448 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 D++ G +L+ L G ++ V + D + G R Sbjct: 449 --------YDIQKG--QILIASGSLSHGFIYEDLEFVILSDRELFGKDRKVS-------- 490 Query: 542 AARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + G I + + + I +G+ + + I G Sbjct: 491 TKKKYKGAKIESFMELAEGDYV------VHENHGIGIFIGIEKIVTEGVARDNLKINYEG 544 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 I + D V + + K++ L + A++ I Sbjct: 545 ----------GTLYVNINQMDLVQKYVGSEGAAPKLNMLGNPEWKKAKSKARNSVKNIAK 594 Query: 661 QLHQLRELFI 670 +L L Sbjct: 595 ELILLYSKRE 604 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 64/463 (13%), Positives = 130/463 (28%), Gaps = 49/463 (10%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D + + + + I+ A Sbjct: 621 FEESFPYEETSDQIDAIQAVKTDMESDKIMDRLILGDVGYGKTEVAIRAAFKAILNHKQV 680 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL---FDYLPADG 333 + Q + L+ M G+ + R P + + + Sbjct: 681 AYLVPTTVLAQQHFERFLKRMESQAISVGVLSRFR---------TPKQIKETLKGIESGM 731 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + +V +H + + + + + + ++ Sbjct: 732 IDIVIGTHRLLSKDVLFKDLGLLIIDEE--------QRFGVAHKEKLKQMRTEVDALTLT 783 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVT 452 ATP L+ S + D V + V + DD + I + +V Sbjct: 784 ATPIPRTLQMSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVYFL 843 Query: 453 TLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + + + L +V H + E I+ E +VLV ++ GL Sbjct: 844 SXRVQNIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGL 903 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 D+ + + I+DADK G + L Q GR R+ K + E Sbjct: 904 DIANANTIIIVDADKMGLSQ----LYQLRGRVGRSDKQAYAYLLYKRDX----ILSEVAE 955 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +R K + G G + D+ G ++ + ++ K Sbjct: 956 KRLNAIKQFTQLG---AGFKIAMRDLEIRGAGDLLGASQSG-------HMAKIGYELYSK 1005 Query: 631 ALQQKIHELEG--------LMMQHAQNLEFEEAAQIRDQLHQL 665 L++ I +G + F + I+D++ +L Sbjct: 1006 MLREAILIEQGGGIEEEKIETTIEIKINAFISSNYIKDEIQKL 1048 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 59/395 (14%), Positives = 123/395 (31%), Gaps = 39/395 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TPRERIVQAMEEIK 264 ++ + + F + T+ V T + +++ Sbjct: 404 YDSPTPVQ-KFSLPIILADRDLMACAQTGSGKTAAFLLPVLTNLVRTGLASSSFSEKQLP 462 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + + L LE ++ ++ T ++ G + + P Sbjct: 463 QAIIVGPTRELVYQIYLEARKFSRGT-IIRPVVAYGGTSTNYQLKELQKGCHLLIATPGR 521 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF-- 382 L D++ + + ++ + + L + K + Sbjct: 522 LMDFINRGKIGLSSVQYIILDEADR-----------------MLDMGFETEIRKLVDSPG 564 Query: 383 --EALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQV 432 T+ SAT + + + + D + G + ++ + Sbjct: 565 MPAKNERHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKR 624 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L+ + A R LV TKR A+ L L + G +H D ER E +RD Sbjct: 625 NKLIELLADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDF 684 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G+ +LV ++ GLD+P+V V D + IGR R G+A Sbjct: 685 KSGKCPILVATSVAARGLDIPKVEHVVNYDLP-----SEVDEYVHRIGRTGRCGNLGRAT 739 Query: 552 LYGDKI-TPSMAKAIGETERRREKQQKYNEEHGIT 585 + D S+A+++ + ++ E Sbjct: 740 SFYDDSANASLARSLVKILADSIQEVPSWLEECAE 774 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 114/383 (29%), Gaps = 26/383 (6%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L + + V + + + LE Sbjct: 18 ALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENLNSGLEA----- 72 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + T+ + + + G + + G P L +V+ Sbjct: 73 --IVLVPTRELAQQVERVARSIGK-AHGKRTVVIYGGAPMERQIAGLK-GASMVIGTPGR 128 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + + + R L E L + + Q + SAT + Sbjct: 129 VMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEII 188 Query: 402 EKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + + ++ L S + + L+ Sbjct: 189 SLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISER---GKYLIFCN 245 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+R +++ E L+++G + LH D+ R + + G+ D+LV ++ G+D+ Sbjct: 246 TRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHG 305 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRRE 573 ++ V D + + IGR R +GKAI + + + I + +R Sbjct: 306 ITHVVNYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIEDFIGKRI 360 Query: 574 KQQKYNEEHGITPQGLNKKVVDI 596 + + I + K++ DI Sbjct: 361 PKMEIKNVGKIKERIDYKEISDI 383 >UniRef50_D0MZ17 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZ17_PHYIN Length = 2091 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 58/471 (12%), Positives = 122/471 (25%), Gaps = 33/471 (7%) Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 ++ + P + ++ + + I Sbjct: 1467 EEVEAQRKVAEMKVRGKNCPRPLQKW-TQCGFSVRMLQLIKKHGYEEPFAIQKQALPAIM 1525 Query: 245 PKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + + + L+ N+ + + ++ E Sbjct: 1526 SGRDVIGIAKTGSGKTLAFLLPMFRHVLAQPPLQENEGPIGIIMAPARELAQQIYVEARK 1585 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ----IGGMYRGDRARK 358 S + G L +V+ I G M R Sbjct: 1586 FSK--GLGLRATAVYGGSSVSEQIANLKRGSDIVICTPGRMIDILCMSAGKMVSLQRVTY 1643 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 L E + + K QT+ SAT + + V G Sbjct: 1644 VVLDEADRMFDMGFEPQITKIMMNIRPDRQTLLFSATFPRSVESLARKVLKKPVEITVGT 1703 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + +EVR + LL + +LV ++ + + + L + G Sbjct: 1704 RSTASGDITQYVEVREEDDKFMRLLQLLGLWYEKGN-ILVFVNKQQACDQIFQDLMKAGY 1762 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 LH D V+R I D + V+V ++ GLD+ ++ LV Sbjct: 1763 PALSLHGGKDQVDRDYTIDDFKRKVRTVMVATSVAGRGLDVKDLVLVINYHCPNH----- 1817 Query: 532 ERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + +GR R G A + + + + ++ E +G Sbjct: 1818 MEDYVHRVGRTGRAGRKGTAYTFISPDEEEYSVDLVKALENAKQTIPP--ELTALAEGFT 1875 Query: 591 KKVVDILAL-------GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 KV A G+ + + +++ + ++ L + Sbjct: 1876 AKVKRGEARYHGSGFKGKGFTFDETER-NETQRTADLQRRQYELDQGILVE 1925 >UniRef50_C5CU85 DEAD/DEAH box helicase domain protein n=10 Tax=Comamonadaceae RepID=C5CU85_VARPS Length = 601 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 104/395 (26%), Gaps = 35/395 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +E FT+ T + Sbjct: 21 YDTPTPIQAQAIPAVLEG-HDLLGGAQTGTGKTAAFTLPMLHKLSTGASATNKFGGIGIR 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E R + + G + P L Sbjct: 80 ALVLTPTRELAAQ-VEESVRTYGKYLELDSTVIFGGVGMNPQISKLKKGVDILVATPGRL 138 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D M + + L E L + K Sbjct: 139 LDLQQQG-----------------MLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPK 181 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q++ SAT + + + + + + ++ + LL+ I Sbjct: 182 EKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHI 241 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +VLV T TK A + E+L ++G LH + R + + + G+ Sbjct: 242 INE-NKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ E+ V + + IGR R +G+A+ + Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNV-----SEDYVHRIGRTGRAGSSGEAVSFVCMDE 355 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + I + + G P+ + Sbjct: 356 EGFMQEIERFTK---QTIPVQFVEGFGPEEGERAE 387 >UniRef50_B4SPP3 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=B4SPP3_STRM5 Length = 646 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 70/478 (14%), Positives = 138/478 (28%), Gaps = 34/478 (7%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L + ++ ++ T + + + + A Sbjct: 13 QLGLSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGK----TAAFALPVL 68 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 ++ ++ + + T+ + E + + G+P L Sbjct: 69 SNIDLQQIKPQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRG 128 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV I + + L E L + + Q Sbjct: 129 VHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVAL 188 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + D V + ++D L + Sbjct: 189 FSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRIL--EVE 246 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + +++ TK E+L L+ G ++ D+ +R I L+ G+ D+LV + Sbjct: 247 PFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATD 306 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ +S V D S + IGR R G+AIL+ M + Sbjct: 307 VAARGLDVERISHVLNYDIP-----YDTESYVHRIGRTGRAGRSGEAILFATPREKGMLR 361 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDI-LALGQNIAKTKAKGRGKS-----RPI 617 I R+ ++ + + +NK I LGQ + + P Sbjct: 362 QIERATRQPIEEMQLPSVEAVNDNRINKFTSRITETLGQGGLDFYRQLLERFETEQNVPA 421 Query: 618 VEPDNVPMDMSPKA----LQQKIHELEGLMMQHAQNLEFEEAAQI-RDQLHQLRELFI 670 +E M LQ + + A FE + R ++ F Sbjct: 422 IEVAAALAKMMQGDTPFLLQPPVRAPR---EERAPRERFERTERPERGDRNERGPRFE 476 >UniRef50_B6KEK5 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KEK5_TOXGO Length = 734 Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats. Identities = 53/397 (13%), Positives = 106/397 (26%), Gaps = 33/397 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE----------- 254 + ++ + F + Sbjct: 250 YTKPTPIQKNSIP-TILSGRDLMACAQTGSGKTAAFLYPIIARMLQDGPPPLPQAAAGGG 308 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + L L E ++ T + G + Sbjct: 309 SGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTG-VRTVAVYGGSDVKRQLIDLDGG 367 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D L + + + + M + L+ F LP + Sbjct: 368 CDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIVESFDLPPSPTP 427 Query: 375 RPLKFEEF-------EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE--- 424 + + + QT+ SAT + + D + G + E Sbjct: 428 QTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYLAVGRVGSTNEFIR 487 Query: 425 ---VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 Q LL ++ + ++ TKR A+ + +YL + +H D Sbjct: 488 QRLQYADEDQKLKLLVKLLRETEKG-LTIIFVETKRKADMIEDYLVDDDFPAVSIHGDRT 546 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E +R + + +LV ++ GLD+ V+ V D + + IGR Sbjct: 547 QQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPT-----NIDDYVHRIGR 601 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 R N G A + ++ + + + ++ Sbjct: 602 TGRAGNLGLATSFVNESNKPILRDLLNLLEEAKQDIP 638 >UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWX2_PHYIN Length = 546 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 118/410 (28%), Gaps = 42/410 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP--------- 252 + ++ + + + ++ F + H Sbjct: 117 VRLGFDKPTPIQCQGWPMAL-SGRDMVGISATGSGKTLAFLLPAIVHINAQVRILQSLFT 175 Query: 253 ------------RERIVQAMEEIKEELAARR-KVLLENNKLLEEQRLTQRTQFDLEMMNE 299 ++ A LA L+ + T+ + Sbjct: 176 KLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPI-VLMIAPTRELAVQIQA 234 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARK 358 G + + + G P L + + I + R Sbjct: 235 ECNKFGASSKIKN-TCVYGGVPKGGQIADLRRGVEICICTPGRMIDMLSMGKTNLRRVTY 293 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 L E L + + K QT+ SAT + + + D + G Sbjct: 294 LVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALANDFLTDFIQVTVGS 353 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + I+EV + L +R R+++ TKR A++L+ L Sbjct: 354 LDLTANKRIKQIVEVMDDHQKYSSLQDHLRD-IYEGGRIIIFCETKRGADELSRNLRNTR 412 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + +H + ER ++R+ + G +LV ++ GLD+ ++ V D + Sbjct: 413 YICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVVNFDMP-----K 467 Query: 531 SERSLIQTIGRAARNV-NGKAILYGD-KITPSMAKAIGETERRREKQQKY 578 + I IGR AR G +I + +A + + E++ Sbjct: 468 NIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLVKIMEEAEQEVPR 517 >UniRef50_Q7UG20 ATP-dependent RNA helicase n=2 Tax=Bacteria RepID=Q7UG20_RHOBA Length = 931 Score = 276 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 67/463 (14%), Positives = 124/463 (26%), Gaps = 45/463 (9%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 ++ E+ ++ + F + + R + Sbjct: 322 SGYDKPTPIQAEIIPYMLDG-RDVLAQSQTGTGKTAAFALPILSRV---DVRSRR----- 372 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + T+ + G + ++ G+ Sbjct: 373 ------------------PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYE 414 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L +VV I + L E L E Sbjct: 415 PQLKQLRRGVQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEK 474 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDL 435 Q SAT + + + D + ++D L Sbjct: 475 SPEGRQVALFSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDAL 534 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + V+V T TK + E L + G L+ D+ R I L+ G Sbjct: 535 TRILEVEETDG--VIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRG 592 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + DVLV ++ GLD+P +S V D S + IGR R G+AI++ Sbjct: 593 QLDVLVATDVAARGLDVPRISHVFNFDLPH-----DSESYVHRIGRTGRAGRSGQAIIFL 647 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + I T ++ + I + + I + + T K Sbjct: 648 TNAQRRQLRFIENTTKQPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQ 707 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 E PM+M AL + +++ + E + + Sbjct: 708 --YAEESGKPMEMIAAALAEMSQNGRPFLLKERPKKQRERSDR 748 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 62/408 (15%), Positives = 130/408 (31%), Gaps = 23/408 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVST---IPRFTIYPK---THYVTPRERIVQAMEEIKEEL 267 +E F++ + + I + I + + + Sbjct: 2 IENFNDFNLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPI 61 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + N+K + L + +++ E+ + + G+P Sbjct: 62 VEKVNK---NSKTTQAMVLCPTRELSIQVAEEISKLAKY--KGVTVVPIYGGQPIERQIR 116 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L ++V I I + + + L E K F Sbjct: 117 SLKMGVQVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYE 176 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA 443 QT + SAT + ++ + + + + P + A + + L + + Sbjct: 177 RQTTFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRIL 236 Query: 444 A--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V TK+M +DLT L+ G LH D+ ++R ++ R D+LV Sbjct: 237 DVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +V LV D + + IGR AR G AI + + Sbjct: 297 ATDVAARGIDVDDVDLVINYDMP-----QDVEYYVHRIGRTARAGREGTAISFVSPREMN 351 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + + +++ + + + + DI TK Sbjct: 352 TLSQIQKYTKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKE 399 >UniRef50_Q2SZW4 ATP-dependent RNA helicase RhlE n=104 Tax=Proteobacteria RepID=Q2SZW4_BURTA Length = 571 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 49/377 (12%), Positives = 97/377 (25%), Gaps = 36/377 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ V F++ + Sbjct: 121 YTTPTPIQANAIP-VVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVR 179 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + T + G Sbjct: 180 ALILTPTRELADQVAANVHAYAKHTPL-------------------RSAVVFGGVDMNPQ 220 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +++ + + + + L E L + Sbjct: 221 MAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLP 280 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 QT+ SAT + + + + + I+ + ++ Sbjct: 281 KERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVK 340 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 IR R+ ++V+V +K A L +E G +H D ERM+ + + GE Sbjct: 341 LIRDRSL--KQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 398 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 + LV ++ GLD+ E+ V D + + IGR R +G A+ Sbjct: 399 EALVATDVAARGLDIAELPAVINFDLPF-----NAEDYVHRIGRTGRAGASGDALSLCSP 453 Query: 557 ITPSMAKAIGETERRRE 573 I + +R Sbjct: 454 NERKQLADIEKLIKRTL 470 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats. Identities = 111/590 (18%), Positives = 196/590 (33%), Gaps = 69/590 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNKTL 69 L GLE+ Q + G++GS ++ A + P +V+ P + Sbjct: 4 LLKPLQAVPEFIGLIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTPGERE 63 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q+ E+ P AV+ P + + ++ +E RL ++ Sbjct: 64 ACQMADEIAGLLPGAAVKL-------------FPVWQLLPFQIIAHSKEVEAQRLQVLES 110 Query: 130 MLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ VV+A A + L P ++ + L L G + ++RRL + Y R Sbjct: 111 LVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERVGLVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I I Sbjct: 171 GRGQFCLRGGILDVFPM-TAHRPVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIGAARE 229 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL-GYCSGIE 307 + + +K+E A+ L+ K E Q + E GY +GIE Sbjct: 230 LIVEDKAWENFRRALKKEYRAQA---LKLEKAGETGAARQLAEKFAETAEGACGYFNGIE 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 N+ + T+ DYLPA ++VD+ I + R L+ G Sbjct: 287 NFLPYFYREVI-----TILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSRGRV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---- 423 LPS + L+ + S+ Sbjct: 342 LPSQFLAYAGWSDIQGGLSRHPVIYSSLLP-----------RQPDFV---RPQQTFSLPW 387 Query: 424 -EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + L EIR ++ + A+ + L++HG Y S Sbjct: 388 KAMPSFLGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASS---- 443 Query: 483 VERMEIIRDLRLGEFD---VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 G VLV + L G ++P+ L + + D G R + + + Sbjct: 444 ----------PEGHVRSGNVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRV 493 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 GR A + D + +G+ Sbjct: 494 GRMAP--------FVDLRVGDYVVHANHGIGQYLGVVPLTIGGHSQEKGI 535 >UniRef50_A6M3F5 DEAD/DEAH box helicase domain protein n=5 Tax=Clostridium RepID=A6M3F5_CLOB8 Length = 525 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 54/449 (12%), Positives = 125/449 (27%), Gaps = 26/449 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + V+ +S + + + + + Sbjct: 9 LGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITKMSD 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD- 332 + + T+ +NE L+ G+ L Sbjct: 69 NR-----GIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAV-YGGDSIDRQIRALRKGD 122 Query: 333 GLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + + + L E L + + QT+ Sbjct: 123 VDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLL 182 Query: 392 VSATPGNYELEKSGGDVV-DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + + D + ++ + +++ L + Sbjct: 183 FSATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLL--DL 240 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ TKR ++L + L+ G V +H D+ R+ + + G ++L+ Sbjct: 241 DNPSSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIAT 300 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ G+D+ V+ V D + S + IGR R G A SM Sbjct: 301 DVAARGIDVEGVTHVFNYDLP-----QDVESYVHRIGRTGRANKSGTAYSLVTPKDFSML 355 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSRPIVEP 620 K I + Q+ I + + ++ ++ K + Sbjct: 356 KQIQNVTKSSITQKPVPTAEEINNKKFKDMMSEVESTIKAGDLTKFIPSAIELTESYDAV 415 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + M K + + + ++ + Sbjct: 416 SIISALMKMKFENEIVFDYSSNKLEAPKK 444 >UniRef50_B8J1L5 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B8J1L5_DESDA Length = 595 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 57/377 (15%), Positives = 110/377 (29%), Gaps = 21/377 (5%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E ++ + + + + + + + Sbjct: 13 ELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPILDKLTPER--- 69 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + T+ + E + G+P L +VV Sbjct: 70 --NTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAKGVQVVVG 127 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + R +A L E L E + Q + SAT Sbjct: 128 TPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVP 187 Query: 398 NYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 E S + + + ++ I ++D L + RA + L Sbjct: 188 PAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRA--FHKAL 245 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR A+++T +L++ G + LH ++ +R +++ R DVLV ++ GL Sbjct: 246 VFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGL 305 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V V D + IGR R G A + + I Sbjct: 306 DVDDVDAVINYDIPH-----DVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRCT 360 Query: 570 RRREKQQKYNEEHGITP 586 R R + + + Sbjct: 361 RARITEGRLPSLRDVDN 377 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 100/665 (15%), Positives = 213/665 (32%), Gaps = 71/665 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + + + L++ G + + G++ S K IA Q+ +++ N Sbjct: 1 MRQVISNYVKEDKRFQELDQVF--GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++ ++ ++ + P D E+ ++ + + R+ Sbjct: 59 LYQADKIEADILQYVSGEEIYK-------------YPVQDIMTEEFSTQSPQLMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + ++ + P +++ + L VG ID L +L + Y R Sbjct: 106 LTALAHGEKGLFIVPLNGLKKWLTPVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG +IDI+P +R+ELFD E++ + FD T + + I Sbjct: 166 VVSHIGEFSLRGGIIDIYPLIGS--PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + Y+ E I ++K R + ++ + L + + L + Sbjct: 224 ASDYIITDEVISHLQTQLKAAYEDTRPKIEKSVRND----LKETYESFK-----LFESTF 274 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ + P T+ DY D ++ VDE + + L+E G Sbjct: 275 FDHQLLRRLVAFMYDQPSTIIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISNLIESG 334 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + FE P + T + + + Sbjct: 335 NGFIGQSFMQYDGFETLLDERPVAYFTLFTSSMPVE------LDHIIKFSCKPVQQFY-- 386 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 Q D + SE ++ + ++V T+ E + L E V H ID Sbjct: 387 ----GQYDIMRSEFQRFIHNDYAIVVLVETETKVERIQSMLNEMHIPVVT-H--IDQA-- 437 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 +V L EG ++P + LV I + + + ++ + Sbjct: 438 --------STSGQAVVVEGSLSEGFELPYMQLVVITERELFKTKQKKQRKRTKTM----S 485 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K Y D + R + ++ + + G + Sbjct: 486 NAEKIKSYQDLNVGDYVVHVHHGVGRYLGV------ETLEVGEQHRDYIKLQYKGTDQL- 538 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D V ++ + ++++L G + + + I D+L L Sbjct: 539 --------FVPVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDL 590 Query: 666 RELFI 670 + Sbjct: 591 YKQRE 595 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 69/465 (14%), Positives = 142/465 (30%), Gaps = 40/465 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F+ + D P + + ++ A + Sbjct: 611 TFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQ 670 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + Q + +E M + I+ SRF S + E + L + + Sbjct: 671 VAFLVPTTILAQQHYETLIERMQDF--PVEIQLISRFRSTKEVKETK----EGLKSGYVD 724 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 +V +H + + + R + + + ++AT Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEE--------QRFGVRHKERIKTLKNNVDVLTLTAT 776 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTL 454 P L S V D V T + V Q + + + + + + +V Sbjct: 777 PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYN 836 Query: 455 TKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + + E L+ H + + E + E+D+LV ++ G+D+ Sbjct: 837 KVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDV 896 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P + + I +AD+ G + L Q GR R+ + K + ET R Sbjct: 897 PNANTLIIEEADRFGLSQ----LYQLRGRVGRSSRIGYAYFLHPAN----KVLNETAEER 948 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + K E G G + D+ G K + D+V D+ + L Sbjct: 949 LQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSVGFDLYSQML 998 Query: 633 QQKIHELEGLMMQ--HAQNLEFE---EAAQIRDQLHQLRELFIAA 672 ++ ++E G+ + ++E E +A + + + Sbjct: 999 EEAVNEKRGIKEETPDVPDVEVELNLDAYLPAEYIQNEQAKIEIY 1043 >UniRef50_UPI0001792ED5 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792ED5 Length = 621 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 52/415 (12%), Positives = 120/415 (28%), Gaps = 37/415 (8%) Query: 193 FRVRGEVIDIFPAESD--DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F ++++ + ++ + + + + F + H Sbjct: 203 FEDYPDILEEIQKQKFEVPSPVQCQTWP-VIMSGHDLIAIAQTGTGKTLAFLLPAFIHID 261 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L E + + M G SG + Sbjct: 262 FQPTPRS--ERKGPSILVLAPTRELVLQI--ESEVKKYSYKGIKAMSIYGGASSGKQKEV 317 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D++ + + + D + + + + M Sbjct: 318 LRKGVEIVIATPGRLNDFVGSGAIDLSDVTFLILDEADRMLDL----------------- 360 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP--- 427 + + QTI SAT + + + G LD Sbjct: 361 GFEPQIRVSLLRVRPDRQTIMTSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQD 420 Query: 428 ----VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + L + + + ++++++ K + L+ L G V +H + Sbjct: 421 ILIMDEEEKEVWLDDFLKSCSADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQC 480 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + LR GE ++L+ ++ G+D+ ++++V D F + + +GR Sbjct: 481 DREMALESLRNGEVNILIATDVASRGIDINDITVVINYD-----FTKDIEEYVHRVGRTG 535 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 R G AI + AK + E + + + + K+ Sbjct: 536 RAGKTGLAITLMTRRDWGKAKDLVEVMEKSGQDVPPELQEMASRYEAKKERDRAE 590 >UniRef50_C1EIE9 Dead-box ATP-dependent RNA helicase n=1 Tax=Micromonas sp. RCC299 RepID=C1EIE9_9CHLO Length = 576 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 56/393 (14%), Positives = 116/393 (29%), Gaps = 38/393 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + ++ + + H + R+ Sbjct: 145 YKSPTPIQAQSWPIALQG-YDLISVAKTGSGKTVGYLFPGIMH-IRGRQGPSFPRPVGPT 202 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L E + R + G G + + P L Sbjct: 203 VTVLAPTRELATQIQDETAK-FGRAIGMYSVCLYGGAPKGHQLRELRHGPQIAIATPGRL 261 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + + ++V + + L + + K + Sbjct: 262 NDFLESGAVNLGSSTYVVLDEAD-----------------RMLDMGFEPQIRKILQRAPA 304 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLL 436 QT++ +AT + + + + + G D ++EV + L+ Sbjct: 305 QRQTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLM 364 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +R + +V TK+M + + + G +H D + ER I+ R G Sbjct: 365 EVLRNPPTQPLKAIVFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSGR 421 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 VLV ++ GLD+ EV++V D + IGR R G A + + Sbjct: 422 VPVLVATDVAARGLDIKEVNMVVNFDFPN-----QIEDYVHRIGRTGRAGNKGWAHSFIE 476 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 +MA+ + R + + G Sbjct: 477 PGEGNMARKLIPILRDAGQDVPAELDDMARRGG 509 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 64/433 (14%), Positives = 129/433 (29%), Gaps = 22/433 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L + + ++ + + + L + Sbjct: 9 LQLDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQKVDP 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K L+ L + +++ E+ + + + G+ L Sbjct: 69 K---VKKLQAIILLPTRELAIQVAEEMRRLAKF-MHGTKVLPIYGGQDIVKQIRSLKDGT 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + D L E L QT+ Sbjct: 125 QIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMF 184 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INE 447 SAT + + D V + P + + + + + + + Sbjct: 185 SATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPK 244 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V TKR ++L + L+ G LH D+ V+R ++ R G D+LV ++ Sbjct: 245 LSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAA 304 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ +V V D + + + IGR R GKA + I Sbjct: 305 RGIDVGDVEAVFNYDVP-----QDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQ 359 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + Q + IT KV +L +I K I+E + D Sbjct: 360 RYCKTKIIPQAIPSLNDIT----EIKVEKVLDQVMDIL--NDNDLTKMVNIIEKKLIEED 413 Query: 627 MSPKALQQKIHEL 639 + L + ++ Sbjct: 414 YTSMDLAAALLKM 426 >UniRef50_A8QDF3 ATP-dependent RNA helicase P62, putative n=1 Tax=Brugia malayi RepID=A8QDF3_BRUMA Length = 587 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 52/379 (13%), Positives = 115/379 (30%), Gaps = 22/379 (5%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE-LAARRKVL 274 +E+L ++ +I ++ + + Sbjct: 195 FPPAIIEKLKKACFEKPTVIQSISWPVALTGHDMISIARTGSGKTLAYTLPGIVHMQNQE 254 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + T+ ++ ++ + ++ G + Sbjct: 255 QPEKVRGPAVLILAPTRELVQQISSMAMNFHS-----KVACAYGGSGRDQQARTIREGVD 309 Query: 335 LVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++ + I G+ +R L E L + + + QT+ S Sbjct: 310 ILAAAPGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIRRIVSMIRPDRQTLMFS 369 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRA-A 444 AT + + D V G L ++ V + + LL + + + Sbjct: 370 ATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEEKLLEFLNRTSSE 429 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + + L+ KR A+ LT + + G LH D ER ++ D + GE +LV + Sbjct: 430 QHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGECSILVATD 489 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ ++ V D ++ I IGR AR+ G + + + Sbjct: 490 VAARGLDVNDIKYVINFDCP-----KNIEDYIHRIGRTARHDKTGTSYTLCTRSDAPIVN 544 Query: 564 AIGETERRREKQQKYNEEH 582 + + ++ + Sbjct: 545 ELVSVLKEAKQTVPSDLLD 563 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 65/367 (17%), Positives = 106/367 (28%), Gaps = 17/367 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + LS + + I + + R K Sbjct: 6 LGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLHRNKR 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 N + + + T+ + G SR + G D+L Sbjct: 66 AQGN-RTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLL-VGGTDMRRQIDFLRRPW 123 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 LV+ I + L E L + QT+ Sbjct: 124 DLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQTLLF 183 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQR-AA 444 +AT + D V+ +D + Q LL I Sbjct: 184 TATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTEPQT 243 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + L+ T TKR AEDL L G LH D +R ++ R G+ +LV + Sbjct: 244 TEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATD 303 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ V+ V D +S + IGR R G+AI + ++ + Sbjct: 304 VAARGLDIDTVTCVINYDLP-----QSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLR 358 Query: 564 AIGETER 570 I Sbjct: 359 DIERLLG 365 >UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME Length = 630 Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats. Identities = 57/464 (12%), Positives = 118/464 (25%), Gaps = 45/464 (9%) Query: 147 GLGDPDLYLKMMLHLTVGMII--DQRAILRRLAELQYARNDQAFQRGTFRV-RGEVIDI- 202 P+L G+ I + + Q + R V+D Sbjct: 152 QYIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIESFEAAGLRNIVLDNI 211 Query: 203 -FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ + F + + +V Sbjct: 212 KKSGYKKPTPVQKHALP-IIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTST 270 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGE 320 + E + +Q + ++ G + Sbjct: 271 YCE-PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVA 329 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + + + + M L K Sbjct: 330 TPGRLLDFVEKGRVKFSSVQFLVLDEADRM-----------------LDMGFLPSIEKMV 372 Query: 381 EFEAL----APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVA 429 + E + QT+ SAT + + + + + G ++ Sbjct: 373 DHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARN 432 Query: 430 TQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + D L + + LV K+ A+ + +L E+ +H D +R E Sbjct: 433 KKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREE 492 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + D + G +LV + GLD+ VS V D + + IGR R Sbjct: 493 ALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLP-----KGIDEYVHRIGRTGRVGN 547 Query: 547 NGKAILYGDKITPSMAK-AIGETERRREKQQKYNEEHGITPQGL 589 G+A + D + + + ++ + G + Sbjct: 548 RGRATSFFDPEEDAPLRGDLVRILKQANQSVPDWMMGGNANRNF 591 >UniRef50_Q46G62 ATP-dependent RNA helicase n=7 Tax=cellular organisms RepID=Q46G62_METBF Length = 579 Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats. Identities = 58/436 (13%), Positives = 124/436 (28%), Gaps = 23/436 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT-HYVTPRERIVQAMEEIKEELAARRK 272 + L D ++ L + + + + + Sbjct: 10 LGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIEKIP 69 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + ++ LT + +++ EL G + + G+ F L + Sbjct: 70 ---EKSGKVQAIVLTPTRELAIQVSEELNSLKG--DKKLHIVPIYGGQSMTQQFRMLKSG 124 Query: 333 GLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV I + + L E L + + + + ++ Sbjct: 125 VDIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLF 184 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AIN 446 SAT L + + D + E + D + + Sbjct: 185 FSATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDE 244 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 LV TK L + L + G LH D+ ER +I+ R + ++LV ++ Sbjct: 245 FYGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVA 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ +++ V + S + IGR R G AI + I Sbjct: 305 ARGIDIMDLTHVINYSLP-----QDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYI 359 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT-----KAKGRGKSRPIVEP 620 +T + K+ + E + + ++ +N K + Sbjct: 360 KKTSKSAMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKIL 419 Query: 621 DNVPMDMSPKALQQKI 636 + + + + Sbjct: 420 AALLKYSFKEMFDESM 435 >UniRef50_A6T3R2 ATP-dependent RNA helicase n=86 Tax=Bacteria RepID=A6T3R2_JANMA Length = 778 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 68/438 (15%), Positives = 129/438 (29%), Gaps = 29/438 (6%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 Q A ++ + + + T+ + E + Sbjct: 49 GQAQTGTGKTASFALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVL 108 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALD 373 G+ L +VV I + R + L E L Sbjct: 109 PIYGGQSYGAQLSALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFI 168 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVR 426 + + + QT SAT + + + D + + + Sbjct: 169 DDVETILQKTPESRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLV 228 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 ++D L + A + +++ TK E+L L+ G ++ DI +R Sbjct: 229 SGMQKLDALTRIL--EAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRE 286 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 I+ L+ G+ D+LV ++ GLD+ +S V D S IGR R Sbjct: 287 RTIQQLKDGKIDILVATDVAARGLDVERISHVINYDVPH-----DPESYTHRIGRTGRAG 341 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G+AIL+ ++ KAI R+ + + +++ I Sbjct: 342 RSGEAILFIAPRERNLLKAIERATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGL 401 Query: 606 TKAKGRGKS------RPIVEPDNVPMDMSPKA---LQQKIHELEGLMMQHAQNL---EFE 653 + P VE ++ L K +E+ + + FE Sbjct: 402 EVFHSLIEDYEREHNVPAVEIAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFE 461 Query: 654 EAAQI-RDQLHQLRELFI 670 A + R + + F Sbjct: 462 RAERFERGDRPERGDRFE 479 >UniRef50_Q299A2 GA20653 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q299A2_DROPS Length = 743 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 120/397 (30%), Gaps = 38/397 (9%) Query: 193 FRVRGEVIDIFPAES--DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +++ + ++ + + + + + F + H Sbjct: 314 FAEYPDLLGEIEKQGFPKPSPIQSQAWP-ILLKGHDMIGIAQTGTGKTLAFLLPGMIHTE 372 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 Q E +E + + + G C ++ Sbjct: 373 YQSIPRGQRGGAN----VLVLAPTRELALQIEMEVKKYSFRDMRAVCVYGGGCRRMQISD 428 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + A + V +++ + + L Sbjct: 429 VERGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADR-----------------MLDM 471 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPI 422 + + K QTI SAT + + + + G + + Sbjct: 472 GFEPQIRKVLMDIRPDRQTIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQV 531 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IE+ ++ ++ + ++++V K A+DL+ L G + +H D Sbjct: 532 IELLEDESEKYGIIKSFIKNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQ 591 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R + I D++ G +L+ ++ GLD+ ++S V D R+ + +GR Sbjct: 592 SDREQAIADIKSGVVRILIATDVASRGLDIEDISHVINYDFP-----RNIEEYVHRVGRT 646 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 R G +I + + MA+ + ++ Sbjct: 647 GRAGRTGTSISFITRSDWGMAQELINILEEADQVVPE 683 >UniRef50_A8WWC4 C. briggsae CBR-VBH-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WWC4_CAEBR Length = 692 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 53/410 (12%), Positives = 105/410 (25%), Gaps = 58/410 (14%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA--- 259 + ++ + F + H + +++ Sbjct: 180 RSGYTKPTPVQKHSIP-TLLFNRDLMSCAQTGSGKTAAFLLPIIQHIMAGGPDMIKTVSS 238 Query: 260 -------------------MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 L L E + + +T ++ Sbjct: 239 ATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYGG 298 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 + P L D + + + ++ + + Sbjct: 299 RENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADR----------- 347 Query: 361 LVEYGFRLPSALDNRPLKFEEF---EALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPT 416 L + + K A T SAT + + + V Sbjct: 348 ------MLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAV 401 Query: 417 G-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 G ++ + + +L+ + A N VLV TKR A +L +L Sbjct: 402 GRVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATN-LVLVFVETKRGANELAYFLNRQ 460 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 R +H D+ +ER + R G+F +LV + GLD+P V V D Sbjct: 461 QIRSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLP----- 515 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R G A + + + + + ++ Sbjct: 516 GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVPE 565 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 66/451 (14%), Positives = 131/451 (29%), Gaps = 30/451 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + L + + + + + Sbjct: 24 LNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPIIQKINE 83 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + + T+ + + G R L G+P L Sbjct: 84 KDRHIQA----LVMSPTRELCIQVADEISKIGKTKRIRVL-PVYGGQPIERQIRSLKRGI 138 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + I + L E L + + QT+ Sbjct: 139 QVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTMLF 198 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRAA--INE 447 SAT L S + V P I+ T+ D + + + + Sbjct: 199 SATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETR--DKVDGLCRILDTTDDC 256 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++++ TK+ ++L L G LH D+ +R +++ R G+ D+LV ++ Sbjct: 257 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAA 316 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ ++ V D S + IGR R N G A+ + K I Sbjct: 317 RGLDIDNITHVVNFDVP-----SDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKLIE 371 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + + + + + + + V + + PIVE D Sbjct: 372 RSIKTKIIRGTLPTDASVLERQREQIVSKMQT------ILEQDRYQDYLPIVETLEKDYD 425 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + Q M + A+ LE + Sbjct: 426 V-----QDIAAAALKFMQEGAKALEEPAEEE 451 >UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi RepID=D2VEC4_NAEGR Length = 535 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 107/393 (27%), Gaps = 34/393 (8%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 + ++ V F + + + Sbjct: 123 SGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIINALLKSGIHKDK----- 177 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 NK + + T+ + + + + Y G Sbjct: 178 ---------RRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTY-LKTVVVYGGASSG 227 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEE- 381 L ++V I + L E L + + E Sbjct: 228 YQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEG 287 Query: 382 ---FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQ 431 T+ SAT + + + D++ G + + Sbjct: 288 SGMPPKGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGK 347 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D L+ + ++ E+ LV K + + E L G + +H D D R +R Sbjct: 348 QDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQ 407 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + G ++LV ++ GLD+ +V+ V D + S I IGR R N G A Sbjct: 408 FKDGYTNILVATDVAARGLDIEKVAHVINYDLP-----KEIDSYIHRIGRTGRVGNLGIA 462 Query: 551 ILYGDKITPSMA-KAIGETERRREKQQKYNEEH 582 + D + + + + ++ E+ Sbjct: 463 TAFFDPSEDGKLCRELVKILKDANQEIPEFIEN 495 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 60/382 (15%), Positives = 110/382 (28%), Gaps = 21/382 (5%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 +L + + + + + + L + Sbjct: 9 QLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPE 68 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 N + + T+ ++E Y G ++ + G+ L + Sbjct: 69 SPNIQA----IVIAPTRELAIQVSEELYKIG-QDKRARVLPIYGGQDIGRQIRALKKNPH 123 Query: 335 LVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++V + I R L E L QT+ S Sbjct: 124 IIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFS 183 Query: 394 ATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + + + + + D L + Sbjct: 184 ATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL--DIQSP 241 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E +V TKR ++LTE L G +H D+ +RM +R + G +VLV ++ Sbjct: 242 ELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVA 301 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ V+ V D + S + IGR R G A+ + M +AI Sbjct: 302 ARGLDISGVTHVYNFDVP-----QDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAI 356 Query: 566 GETERRREKQQKYNEEHGITPQ 587 +T +R+ + K Sbjct: 357 EQTTKRKMDRMKAPTLDEAIEG 378 >UniRef50_A9V2S5 Predicted protein n=2 Tax=Eukaryota RepID=A9V2S5_MONBE Length = 545 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 69/466 (14%), Positives = 132/466 (28%), Gaps = 51/466 (10%) Query: 141 SVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 SV L+ + + + G D A A V +++ Sbjct: 94 SVKKADRKAIDALWKEFNVTIEAGEGHDAYAF------------PPAMTFADAGVDADLM 141 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 A++ + V+ L FT+ H + + ++ Sbjct: 142 ACTKGFDKPTAIQSCCWPIVVQGQDLVGVAA-TGSGKTLAFTLPALQHV----KGLGRSK 196 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L L Q + + G + + Sbjct: 197 TNCPRVLVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTALRQGCELVIA 256 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L L E L + Sbjct: 257 TPGRLVDFLNDGK-----------------LDLSHVSYLVLDEADRMLDMGFERDIKLIL 299 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + + + + G + +++V + Sbjct: 300 GAVGTQRQTLMFSATWPEEVRAIAANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKD 359 Query: 433 DDLLSEIRQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL +R+ A+ N +VL+ L K+ A L +L+ V +H D++ +R +R Sbjct: 360 RRLLDVLRKHPASKNAKVLIFALYKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRA 419 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 + G+ +L+ ++ GLD+ V++V + + IGR R G A Sbjct: 420 YKSGDSHILIATDVAARGLDVKGVAVVINYTFPL-----TIEDYVHRIGRTGRAGATGIA 474 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + + + A A+G R + E Q +K + Sbjct: 475 YTFFTQHDKAHAGALGNVLREA--DVEVPEALMKFGQHTKRKEHAL 518 >UniRef50_A5FST0 DEAD/DEAH box helicase domain protein n=5 Tax=Dehalococcoides RepID=A5FST0_DEHSB Length = 561 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 104/383 (27%), Gaps = 38/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + L + + ++ V+ Sbjct: 21 YKEPTPIQAQAIPP-IMAGHDVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRT------ 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + L QR + E G + P L Sbjct: 74 -LVIAPTRELACQISDSFRSLGQRAR-IRECSIYGGVNMDQQIRRLRSGVDVVVACPGRL 131 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + V + I + M+ + Sbjct: 132 LDHIWRGTIDVCGVETLIIDEADRMFD-----------------MGFQPDIQSILKCLVQ 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + V G + Q LL EI Sbjct: 175 PHQTLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEIL 234 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + VL+ TK AE+L + + + G L ++ R ++ R G F +L Sbjct: 235 KTVET-KSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ +S V D S IGR R G+A Sbjct: 294 VATDIAARGLDIDHISHVINYDMP-----DSPEDYTHRIGRTGRFDRTGQAFSLVTGRDG 348 Query: 560 SMAKAIGETERRREKQQKYNEEH 582 M + I ++ + + Sbjct: 349 DMVRDIQRLLSSPIQRLRVDGFD 371 >UniRef50_D1IXE3 Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=8 Tax=Magnoliophyta RepID=D1IXE3_VITVI Length = 797 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 54/416 (12%), Positives = 117/416 (28%), Gaps = 24/416 (5%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 R P + I L ++ + F + T+ Sbjct: 322 ERAGYKTPSPIQMAAIPLGLQ--------QRDVIGIAETGSGKTAAFVLPMLTYISRLPP 373 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + E + L E + + G + + Sbjct: 374 MSEENEAEGPYAVVMAPTRELAQQIEDETVK-FAHYLGIKVVSIVGGQSIEEQGFRIRQG 432 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D L ++ ++V + + M + V + Sbjct: 433 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 492 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRP 427 + + + + T SAT + + + VV G + + + Sbjct: 493 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMK 552 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + ++ L + + ++ +V TK+ A++L + L++ G RV LH +R Sbjct: 553 ESEKMFKLQKLLDEL--GDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREI 610 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + R ++VLV ++ G+D+P+V+ V D + IGR R Sbjct: 611 SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP-----GNIEMYTHRIGRTGRAGK 665 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 G A + + + + + + + D + Sbjct: 666 TGVATTFLTLHDSDVFYDLKQMLIQNNSPVPPELARHEASKFKPGAIPDRPPRRND 721 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 60/457 (13%), Positives = 124/457 (27%), Gaps = 40/457 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + +E L F + + Sbjct: 24 YNEPTPIQAQAIPPVLEGRDLLGI-AQTGTGKTAAFMLPSIDRLREADNQTPFKSC---R 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + G +G + G Sbjct: 80 MLVLAPTRELAGQI--------------AQSAKDYGAMAG-----LKVHSIVGGTSVGKD 120 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L ++V + I ++ + L E L + + + Sbjct: 121 RNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVP 180 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSE 438 QT++ SAT E G + V E + L+ Sbjct: 181 AERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEM 240 Query: 439 IRQRAA----INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 I + ER+LV T TK A+ + + L + G +H + +R + + + Sbjct: 241 ILKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKR 300 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + +L+ ++ G+D+P VS V + + IGR AR G AI + Sbjct: 301 AKTPILIATDVAARGIDIPGVSHVINYELPNV-----PEQYVHRIGRTARAGKDGVAIAF 355 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + K I + + E +G+ + G I + Sbjct: 356 CAEDERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQG 415 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 +P + ++ + + +H Sbjct: 416 GTNRSKPQGGNPQSAGGPVENPVKKQGTSKQKHPARK 452 >UniRef50_Q3AX69 DEAD/DEAH box helicase-like n=18 Tax=cellular organisms RepID=Q3AX69_SYNS9 Length = 624 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 60/402 (14%), Positives = 117/402 (29%), Gaps = 16/402 (3%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + ++ L+ + + V + A L Sbjct: 78 FSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGK----TAAFALPLLERL 133 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E+ + + + T+ + + + + G + L + Sbjct: 134 ESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDV 193 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + L E L + E Q + SA Sbjct: 194 VVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSA 253 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAI--NERV 449 T S + D D +I R + + L +++ E V Sbjct: 254 TMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGV 313 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TK + + E LE G +V L+ D+ +R + LR G DVLV ++ G Sbjct: 314 IIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARG 373 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+ + LV D + + IGR R G+A+L+ + + Sbjct: 374 LDVERIGLVINYDMPF-----DSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERA 428 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + I L++ + +A +G Sbjct: 429 TGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEG 470 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 114/670 (17%), Positives = 228/670 (34%), Gaps = 68/670 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + V + +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QLY +++ + + P+ D I + R+ + Sbjct: 63 RAEQLYSDLRFYSRD---------------VYMYPAKDILFFSADVHGNAITRKRMDVLR 107 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ +VA+V A++ K ++++ +D + ++L+ L Y + D Sbjct: 108 RLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 168 EEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAG 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V ++RI + + +I+ EL + L E+ R+ + E + E G++ Sbjct: 227 EIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVD 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +Y + +L D LP D +++DE+ + G R+ +E G+ Sbjct: 287 SYVDYFYSDTV-----SLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP ++ + + + + S + Sbjct: 342 LPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGRDDRISYAHKTEIECHEV---------HS 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVERM 486 D L+++IR VL + + A+ + + L + YL +D R Sbjct: 393 YRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKVLTPRE 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 R LR G +P + LV + + D S R Sbjct: 453 IAAMAGR------------LRSGFMIPAMHLVVVSEGDVFSSRSSSGK---------RTQ 491 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + S + Y I G K + I Sbjct: 492 KKLPYSGEIIKSFSDVSVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGGKL-- 549 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 E D + S + KI+ L G Q +N ++ + L +L Sbjct: 550 -------YVLASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLY 602 Query: 667 ELF---IAAS 673 + Sbjct: 603 AERQSKEGHA 612 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 66/429 (15%), Positives = 117/429 (27%), Gaps = 35/429 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + V + I+ A Sbjct: 623 FEETFPYKETDDQLRAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQV 682 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + E M + R L + L + + Sbjct: 683 AYLVPTTILAEQHYETFTERMKDYPVV------IRLLCRFCTQKEIKNTLRELKEGKVDI 736 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + ++ATP Sbjct: 737 VIGTHRLLSKDVEFKNLGLLIIDEE--------QRFGVNHKEKIKEMKTNVDVLTLTATP 788 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL-LSEIRQRAAINERVLVTTLT 455 L S + D + +D V +L I + A +V Sbjct: 789 IPRTLHMSLVGIRDMSLLEEAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNR 848 Query: 456 KRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E T +++ V + H +D +I+ E DVLV ++ GLD+P Sbjct: 849 VNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIP 908 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DA+ G + L Q GR R+ + K I E +R Sbjct: 909 NANTIIIHDANNFGLAQ----LYQLRGRVGRSDRSAFAFMFYRRN----KVISEVAEKRL 960 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K + G G+ D+ G +++ V D+ K L Sbjct: 961 RAIKEYTDLG---SGVKISKADLNIRGAGSVLGESQSGNYEV-------VGYDLYCKMLN 1010 Query: 634 QKIHELEGL 642 + E G Sbjct: 1011 DAVRERRGD 1019 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 98/665 (14%), Positives = 215/665 (32%), Gaps = 76/665 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + L LE G + G++GS KT ++ ++ +++ N+ A Sbjct: 3 LIDMVQADPELSALWPKLETG--RHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ + V P D + A + R++A + Sbjct: 61 DELAADLSSLLGDALVYD-------------FPVEDVLAAEVAVSSPETRNDRINALTFI 107 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + ++V S++ + P + L + + +D + + ++L + Y R+ Sbjct: 108 QSGQPGIIVTSLAGYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSA 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI+P + D +R+ELFD E++ + FD T + + + + I P T Sbjct: 168 PGQFAIRGGIIDIYPL-NQDDPIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDM 226 Query: 250 VTPRE--RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + A + + + + + LT + + L + Sbjct: 227 IASDQVLTDAGARIGKQATAYKAKVKDAAAKQAITDGLLTTS-----QQLQALERPENLA 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y+ L + DYL D L+ D+ + + + L E G Sbjct: 282 LYAPELYP-----EHHRITDYLAGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRL 336 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP + + + + + + P+ + Sbjct: 337 LPKTPNP---TIQALNQRDRHPRLYLSLFQKGMGQLRLDSLTN---VPSRNVQQ------ 384 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +Q+ L +E + + V+ K + L+ L + Sbjct: 385 FFSQMPLLKTETDRWVKQKQTVVFLVSDKNRLDKLSATLHDFEISNVV-----------T 433 Query: 488 IIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 L G+ + + L+ G ++P++ LV + + + + R+ QT+ R Sbjct: 434 EPNQLLSGKVQL---TDGSLKNGFELPDLKLVVVTEHELFNARQRRRARHQTLANTER-- 488 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + K +Y + G+++ + I+ + Sbjct: 489 ---------LRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKL-- 537 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 P+ + + V +S +++L G Q + I D+L L Sbjct: 538 -------FIPVDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLY 590 Query: 667 ELFIA 671 A Sbjct: 591 AKREA 595 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 134/462 (29%), Gaps = 38/462 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F++E D L P + + ++ A Sbjct: 609 QKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGK 668 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q + + G SRF + L + Sbjct: 669 QVAILVPTTILAQQHFDTMKDRFADFPVKIG--LLSRFQTPHQNKMT----IKGLKNGTI 722 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H + + + E + + + + ++A Sbjct: 723 DIVVGTHRLLSKDVAFRDLGLL---VIDE-----EQRFGVKHKERIKQLKSNVDVLTLTA 774 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTT 453 TP L S V D V T + V Q ++ I + +V Sbjct: 775 TPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLH 834 Query: 454 LTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E LEE Y H + + +I D G +DVLV ++ G+D Sbjct: 835 NRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVD 894 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 MP + + I +AD G + L Q GR R+ + + K + E + Sbjct: 895 MPNANTLIIENADHYGLSQ----LYQLRGRIGRSSRVAYAYFMYQ----PMKVLNEVAEK 946 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + K E G G + D+ G K + D+V D+ + Sbjct: 947 RLQAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF-------IDSVGYDLYTQM 996 Query: 632 LQQKIHELE--GLMMQHAQNLEF-EEAAQIRDQLHQLRELFI 670 LQ+ +++ + + ++ EA D + R+ Sbjct: 997 LQEAVNKRRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIE 1038 >UniRef50_C4G990 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G990_9FIRM Length = 538 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 126/464 (27%), Gaps = 38/464 (8%) Query: 194 RVRGEVIDIFPAESDDIALRVELFD-----EEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 R D P + + ++ + + + + V I Sbjct: 42 SSRDSQRDQEPDQGFRRGVNLKFSEFGLKKDLLSAIRKAGYEEPTPVQEESIPVILEGRD 101 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLE--EQRLTQRTQFDLEMMNELGYCSGI 306 + Q A L K LT + +++ + Sbjct: 102 MI----GCAQTGTGKTAAFALPVLHKLTLLKRPRVRALVLTPTRELAIQIFDNFKKYGRY 157 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 + G L ++V + +G + L E Sbjct: 158 LH--LRTVCLYGGAKRGPQIGALRRGADILVATPGRLLDFMGQDLVDLSSVEILVLDEAD 215 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---I 422 L + E QT+ SAT + + + D V + Sbjct: 216 RMLDMGFLPDVSRIVESTPSKRQTLMFSATMEKEVRQLADRMLKDPVQVQVTPENEAADT 275 Query: 423 IEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 +E + + + +D I E +V T TK A+ L+ L+ G +H D Sbjct: 276 VEQKLIFSSREDKREIIASLLTDEAVESAIVFTRTKHGADKLSRELKRRGIESVAIHGDK 335 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R + + + G+ V+V ++ GLD+P++S V D + I IG Sbjct: 336 TQGQRQDALNRFKSGKVRVMVATDVAARGLDIPKLSHVFNYDVP-----EEAGAYIHRIG 390 Query: 541 RAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R +G AI + + + E + + + + + Sbjct: 391 RTGRAGESGIAITLCCEAELDALREVEELLEKPIPELQTQWSLPLERK-----------A 439 Query: 600 GQNIAKTKAKGRGKSRPIVEPD--NVPMDMSPKALQQKIHELEG 641 + GR R + + + Q + Sbjct: 440 RKGKGGRTRHGRSGYRSGGQKNAGKSGHKTGSRNRQGHADRRQK 483 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 66/474 (13%), Positives = 134/474 (28%), Gaps = 50/474 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ +E + F+I + + Sbjct: 22 FTKPTPIQGMAIPAALEGKDILGT-AQTGTGKTLAFSIPLINKLILDKNAF--------- 71 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + + G + R P + Sbjct: 72 ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRSRIIVGTPGRI 131 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L L + ++ + + M + +F Sbjct: 132 NDHLKRKSLNLSATKYLVLDETDRMLD-----------------MGFTPQIEMVLKFVPK 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT L S + TG + + D+L+ Sbjct: 175 DHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELID- 233 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 Q A +LV TKR A+ + + L+E G +H D+ +R +I R G Sbjct: 234 --QFLARKGSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKR 291 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +L+ ++ GLD+P + V D + + IGR AR + G A+ + Sbjct: 292 ILIATDVAARGLDIPLIQHVINYDLP-----QVPEDYVHRIGRTARAGSEGSALTFLTPD 346 Query: 558 TPSMAKAIGETERRREKQQK----YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 SM +I + K + ++ +G N K ++ K + Sbjct: 347 DRSMWNSINKLIDPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSS 406 Query: 614 SRPIVEPDNVPMDMSPKALQQKIH---ELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 R + + P +K + + ++ + + + + Sbjct: 407 FRNKPKSYDKSRSGKPPRDGEKKSFGFKGKSSFRDKPKSYSKDRSQRPSRDGEK 460 >UniRef50_Q0D1K3 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=34 Tax=Dikarya RepID=PRP5_ASPTN Length = 1181 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 60/428 (14%), Positives = 115/428 (26%), Gaps = 27/428 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLEN 277 ++ + + + I + + + + + LEN Sbjct: 560 TLDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLEN 619 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + +T + ++ + + G P L +VV Sbjct: 620 MEGPIGLIMTPTRELATQIHKDCKPFLKA--LNLRAVCAYGGAPIKDQIAELKRGAEIVV 677 Query: 338 DESHVTIPQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 I G + R L E + + +K QT+ S Sbjct: 678 CTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFS 737 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQR---- 442 AT + + V G + I+EVR + LL + Sbjct: 738 ATFPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGNLYSSD 797 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + R L+ + A+ L L G +H D ++R I D + G F VL+ Sbjct: 798 ENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIA 857 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+ ++ LV DA + GR R N G A+ + + Sbjct: 858 TSVAARGLDVKQLKLVVNYDAPNH-----LEDYVHRAGRTGRAGNTGTAVTFLTEDQERF 912 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + I + ++ ++ +KV + Sbjct: 913 SVDIAKALKQSGQKVPEP--VQQMVDSFLEKVKAGKEKASASGFGGKGLERLDQERDAAR 970 Query: 622 NVPMDMSP 629 Sbjct: 971 MRERRTYK 978 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 70/467 (14%), Positives = 128/467 (27%), Gaps = 24/467 (5%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L T + + + Q A ++ Sbjct: 22 ENLQSLGYETATPIQAGTIPLLLEGRDV----VGLAQTGTGKTAAFALPILANIDVKVRS 77 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + + E G + G L +VV Sbjct: 78 PQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGTHIVVATPG 137 Query: 342 VTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + I L E L + + SAT Sbjct: 138 RLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALFSATMPKRV 197 Query: 401 LEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 + + + + + IE + L +++ E V+V T T Sbjct: 198 RDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTEGVIVFTRT 257 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + E L + G + L+ D+D R+ + DL+ G DVLV ++ GLD+ + Sbjct: 258 RESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAARGLDVERI 317 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 + V D E + + IGR R GKAIL+ M + I R+ Sbjct: 318 THVINYDVPF-----DEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQSIP 372 Query: 575 QQKYNEEHGIT-------PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 + K I + + D + R I + Sbjct: 373 EIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAVALAGMLHS 432 Query: 628 SPKALQQKIHELEGLMMQHAQN-LEFEEAAQIRDQLHQLRELFIAAS 673 + K + E ++ + + + R + Q + A S Sbjct: 433 PGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQGLQKKAATS 479 >UniRef50_B0SEU1 Superfamily II DNA and RNA helicase n=5 Tax=cellular organisms RepID=B0SEU1_LEPBA Length = 471 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 49/390 (12%), Positives = 114/390 (29%), Gaps = 37/390 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++++ ++ F + + + + + Sbjct: 26 YTKPTPIQIQAIPLLLDN-HDLLGCAQTGTGKTAAFALPMIHNLI---STRAKPNPKQPR 81 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + T + G + + P L Sbjct: 82 SLVLVPTRELAIQVHESFVLYGKYT-QIRTAVIFGGVGQNPQAKAIASGLDVLIATPGRL 140 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + + M L + K + Sbjct: 141 VDLMNQNLVSLKNLEIFVLDEADRM-----------------LDMGFIHDIRKIISYLPK 183 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 Q ++ SAT + + +V+ + + + +A + + LL Sbjct: 184 RRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHL 243 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++ ++ T TK A ++E L + G + +H + R + D R G+ Sbjct: 244 FKD--KNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNR 301 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 LV +L G+D+ +++ V + + + IGR AR G AI + Sbjct: 302 ALVATDLAARGIDIDDITHVINYEIPYV-----PETYVHRIGRTARAGKNGIAIAIAEAD 356 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQ 587 S+ K I + + + H + Sbjct: 357 ERSLIKDIEKVIGISIPVDRDHPYHAARVE 386 >UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA Length = 770 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 58/395 (14%), Positives = 113/395 (28%), Gaps = 39/395 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT-PRERIVQAMEEIK 264 ++ + F + T +T + + ++ Sbjct: 333 YERPTPVQKYSIP-IINADRDLMACAQTGSGKTAAFLLPVLTKLITNGLQSSQFSEKQTP 391 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L LE ++ ++ T ++ G + P Sbjct: 392 RAIVVGPTRELIYQIFLEARKFSRGT-VVRPVVAYGGTSMNHQIRDLQRGCHILIATPGR 450 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF-- 382 L D++ + + V + + L + K Sbjct: 451 LMDFINRGLVGLDHVEFVILDEADR-----------------MLDMGFETEIRKLASSPG 493 Query: 383 --EALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQV 432 T+ SAT + + + D + G + I + Sbjct: 494 MPSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKR 553 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LL I A R LV TKR A+ L L + G +H D ER + +RD Sbjct: 554 AKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDF 613 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + +L+ ++ GLD+P+V V D + + IGR R G+A Sbjct: 614 KSAVCPILIATSVAARGLDIPKVEHVINYDMP-----KEIDEYVHRIGRTGRCGNLGRAT 668 Query: 552 LYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 + D +A+++ + +++ E Sbjct: 669 TFYDNNKDGELARSLVKILSEAQQEVPGWLEECAE 703 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 114/380 (30%), Gaps = 40/380 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + + F I H + + M + Sbjct: 147 KPTPIQSVSIPVAL-KGHDLIGIAKTGSGKTAAFLIPAMVHI-----GLQEPMYRGDGPI 200 Query: 268 AARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 E + + E + G G + P L Sbjct: 201 VLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQANDLRHLPSLVVATPGRLI 260 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D++ +R L E L + + K + Sbjct: 261 DFIEGGQ-----CP------------MNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKD 303 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + +VD V G + +I ++ L Sbjct: 304 RQTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEV 363 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + ++++ T TKR +DL E L G + LH D +R ++ R + Sbjct: 364 LNEHKDD--KIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKG 421 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ ++ +V D + + IGR AR G A+ + Sbjct: 422 ILVATDVAARGLDVNDIDIVINYDFP-----GDIETYVHRIGRTARGNKEGLAVTFFTDE 476 Query: 558 TPSMAKAIGETERRREKQQK 577 +M++ + + + +++ Sbjct: 477 NKNMSRKLAKIMTQAKQELP 496 >UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax=Brugia malayi RepID=A8P4I3_BRUMA Length = 754 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 63/486 (12%), Positives = 121/486 (24%), Gaps = 49/486 (10%) Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAEL-QYARNDQAFQRGTFRVRGEVIDIF--PA 205 D L+ L + I+ E ++ + Sbjct: 249 LPRDELLESELFAGMNSGINFDKYEEIPVEATGQDCPPPIALFADLKLHPWIEGNIRLSG 308 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT--------PRERIV 257 ++ + F + + + + Sbjct: 309 YGRPTPVQKYSIP-TLMNNRDLMSCAQTGSGKTAAFLVPLINNVLQAGPEALYKSTTQQN 367 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L E ++ RT ++ + L Sbjct: 368 GRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGGRENYREQINKLRLGVHI 427 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D + + + + + + L + + Sbjct: 428 LIATPGRLIDVMEQGLIGLDGCRFLVLDEADR-----------------MLDMGFEPQIR 470 Query: 378 KF--EEFEALAPQ--TIYVSATPGNYELEKSGGD-VVDQVVRPTGLLD-------PIIEV 425 + Q T SAT + + + V G + I Sbjct: 471 QIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIVW 530 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + L+ + + LV TKR A DL YL++ G V +H D+ +R Sbjct: 531 VEEHEKKSFLMD-LLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 589 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + R G +LV + GLD+P V V D + IGR R Sbjct: 590 EKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLP-----SDIDEYVHRIGRTGRV 644 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 N G A + + ++A+ + E ++ I+ A G + Sbjct: 645 GNVGLATSFFNDKNRNIARDLAELVVEANQELPEW-LEKISADAQRYGTRPGRAKGGSRF 703 Query: 605 KTKAKG 610 + Sbjct: 704 GGRDHR 709 >UniRef50_Q0AFH3 DEAD/DEAH box helicase domain protein n=1 Tax=Nitrosomonas eutropha C91 RepID=Q0AFH3_NITEC Length = 488 Score = 272 bits (695), Expect = 4e-71, Method: Composition-based stats. Identities = 51/434 (11%), Positives = 112/434 (25%), Gaps = 36/434 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ + FT+ H Sbjct: 25 YINPTPIQAQVIPP-ILAGKDVMASAQTGTGKTAGFTLPLLHHLQAHASSSTSPARHPVR 83 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E R + + G + P L Sbjct: 84 ALIMAPTRELAMQI-DESVRKYGKYLALRTTVVFGGVNIEPQITELRNGVEILVATPGRL 142 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + M K Sbjct: 143 LDLVEHKAVNFSKTEILVLDEADRML-----------------DMGFLPDIKKVMALLPS 185 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQR 442 Q++ SAT + + + G + V ++ I + + + + Sbjct: 186 QRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHL 245 Query: 443 AAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ LV TK A L + L H +H D + +R + + + + G+ +L Sbjct: 246 VKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQIL 305 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ G+D+ ++S V + + + IGR R GKAI + Sbjct: 306 VATDVAARGIDIEKLSHVVNYELP-----GNPEDYVHRIGRTGRAGSKGKAISLVSEHET 360 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + +I + + + I V + ++ A+ K + Sbjct: 361 ELLTSIEKLLNTKLEI------EQIAGFDAELFVRSLPDRKNRVSADIARRSNKQAEVAN 414 Query: 620 PDNVPMDMSPKALQ 633 + + Sbjct: 415 GEKTRKYSGSRRSA 428 >UniRef50_UPI00015B57D6 PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Nasonia vitripennis RepID=UPI00015B57D6 Length = 715 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 59/457 (12%), Positives = 128/457 (28%), Gaps = 41/457 (8%) Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGT-FRVRGEVIDIFPAES--DDIALRVELF 217 ++V D E Y + FR +++ ++ ++ + + Sbjct: 248 ISVDHTFDIDPSQADSEE--YKIPNPVQTFEQAFRNYPDILVEIRKQNFEKPSPIQCQAW 305 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + + F + H L L Sbjct: 306 P-ILLSGKDMIGIAQTGTGKTLAFLLPALIHIDNQDTPRS--ERSGPTVLVMAPTRELAL 362 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 E + + G + P L D + + L V Sbjct: 363 QIEKEVNKYYYH--GIKAVCVYGGGDRKKQMNIVSKGVEIVIATPGRLNDLIQTEVLDVK 420 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 S++ + + M L + + K QT+ SAT Sbjct: 421 CVSYLVLDEADRM-----------------LDMGFEPQIRKSLLDIRPDRQTVMTSATWP 463 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVL 450 + + + G LD + D+L + A +++V+ Sbjct: 464 PGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLKDFFHNMAPSDKVI 523 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V K +D+ L G + +H + +R + + D++ G+ ++L+ ++ G+ Sbjct: 524 VFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNILLATDVASRGI 583 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +++ V D R + +GR R G++I + + K + + Sbjct: 584 DIEDITHVFNYDFP-----RDIEEYVHRVGRTGRAGKTGESISLVTRRDWGLTKELIKIL 638 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 E++ KK D G + Sbjct: 639 EEAEQEIPTELYSMSERYEAMKKKRD-EERGDGDRRE 674 >UniRef50_Q485D3 ATP-dependent RNA helicase, DEAD box family n=24 Tax=Gammaproteobacteria RepID=Q485D3_COLP3 Length = 455 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 60/462 (12%), Positives = 123/462 (26%), Gaps = 40/462 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ E + + F++ + E A Sbjct: 25 TPIQQEAIP-VIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTSTDENSAE 83 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 + + + LT + ++ + + S + G + L Sbjct: 84 ---EKSASGQAIRALILTPTRELANQVADNIKQFS--QYLPIKSGVVYGGGKMASQTKML 138 Query: 330 PADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 ++V + + + L E L K Q Sbjct: 139 KQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQ 198 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT + + + G + + + + L I Sbjct: 199 TLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLSELIG- 257 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++VLV TK A L + L+ G + H D R + + G+ VLV Sbjct: 258 -VNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLV 316 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+P+++ V + +GR R G AI Sbjct: 317 ATDVAARGLDIPDLAFVVNFHLPFL-----PEDYVHRVGRTGRAGKSGTAISLVSPKDER 371 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I + R+ ++ + A A K + + R E Sbjct: 372 FLENIEQLIERKFERIVAPGYE----------FNRLEASEYQEATVKRDSKNRYRAAQEK 421 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 + L +K +++ L + +I+ + Sbjct: 422 NQN--------LAKKDVKIKSLSKNKTARTNSKYNNKIQKKR 455 >UniRef50_Q11UP8 ATP-dependent RNA helicase (Cold-shock DEAD-box protein A) n=2 Tax=Bacteria RepID=Q11UP8_CYTH3 Length = 580 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 61/442 (13%), Positives = 117/442 (26%), Gaps = 25/442 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E VE + + + Q Sbjct: 6 LGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDL----TGQAQTGTGKTAAFGIPAIE 61 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ + + + T+ + + GE L A Sbjct: 62 HVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGA 121 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + + L E L QT+ Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--E 447 SAT L + + + + +E + + Q +N + Sbjct: 182 SATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ 241 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +L+ TKR E++T+ L+ +G LH D +R E++ R G ++LV ++ Sbjct: 242 LMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA 301 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ V V D + + IGR R GK+ + I Sbjct: 302 RGIDVTGVDAVINYDVPL-----DIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIE 356 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + ++ + + K + + + + + Sbjct: 357 RYTKATIEKAETPTRQELVAY----KKDKLATRITTELEKP-----NIKIWSDLLEEYKE 407 Query: 627 MSPKALQQKIHELEGLMMQHAQ 648 A Q I L M A+ Sbjct: 408 KGITADQIAIALLSKEMKDLAE 429 >UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Tax=Entamoeba RepID=B0ED30_ENTDI Length = 535 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 130/458 (28%), Gaps = 53/458 (11%) Query: 141 SVSAIYGLGDP---DLYLKMMLHLTVGMIIDQRAILRRLAEL-----QYARNDQAFQRGT 192 V+ P D Y++ + L + + R L E Sbjct: 102 PVNYDINTLPPFKKDFYVESPITLNR----NIEEVSRYLQENEIQVNGCESIKALLTFEE 157 Query: 193 FRVRGEVIDI--FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 ++D+ ++ + ++ + F I H + Sbjct: 158 CNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAE-TGSGKTISFLIPAIIHIL 216 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L E + T+ T + G + Sbjct: 217 DTPLAQYRE---GPRVLILAPTRELVCQIADEAIKFTKGTS-IKTVRCFGGVPQSCQMKD 272 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D++ + + + + + M Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLE-----------------M 315 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PI 422 + + QT+ +AT + + G + + G D I Sbjct: 316 GFEVQVQDIIGQIRPDRQTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQI 375 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 +EV + + +++ + ++VL+ TKR A++L L + RV +H D Sbjct: 376 VEVCQERDRDSKMNEIVKRIGSE-KKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQ 434 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER + D + G + L+ +L GLD+ + +V + + I IGR Sbjct: 435 AERDRALSDFKSGAVNYLIATDLASRGLDIRNIEIVINYEMP-----SDIENYIHRIGRT 489 Query: 543 ARNVN---GKAILYGDKITPSMAKAIGETERRREKQQK 577 R G+AI +AK + + ++ Sbjct: 490 GRMGRSVEGEAISLFTYADARLAKDLISVLKGAHQEVP 527 >UniRef50_Q5L3G9 DEAD-box ATP-dependent RNA helicase cshA n=94 Tax=Firmicutes RepID=CSHA_GEOKA Length = 467 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 59/390 (15%), Positives = 114/390 (29%), Gaps = 17/390 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ + + + + + + V Sbjct: 7 LGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNV 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ ++E Y G R L G+ L Sbjct: 67 KNSAVQA----LVVAPTRELAIQVSEELYKIGAVKRVRVL-PIYGGQDIERQIRALKKHP 121 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I I R + L E L QT+ Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAI--NE 447 SAT + + + + + + P I+ + + + I E Sbjct: 182 SATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPE 241 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V TKR ++L E L G +H D+ +R+ ++R + G ++LV ++ Sbjct: 242 LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAA 301 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ V+ V D + S + IGR R G A+ + I Sbjct: 302 RGLDISGVTHVYNFDIP-----QDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIE 356 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDI 596 T +R+ ++ K + + Sbjct: 357 RTTKRKMERMKPPTLDEALEGQQRIAIEKL 386 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 123/669 (18%), Positives = 225/669 (33%), Gaps = 69/669 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + +++ L EGL+ +Q + G+ S +T +A + RP +++ P+ Sbjct: 1 MLREVAAELLALPSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA-SVNEHIEQMRLS 125 +T A ++Y +M F + V P + + S + R++ Sbjct: 61 QTHAGRIYEDMLSVFKDEDVYL-------------FPGKELLYYSNLFSESGDAAAQRIA 107 Query: 126 ATKAMLERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A K + ++VVVA+VSA+ P + + L I +L +L + Y R Sbjct: 108 AMKRLARGDNIVVVATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERV 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + +G VRG ++DI+PA + R+E F E V+ + FDP + + + + Sbjct: 168 EMVDVQGQVSVRGGIVDIYPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELT 226 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ-RLTQRTQFDLEMMNELGYC 303 P V A+ + +E A+ L E + +L +R +E + E Y Sbjct: 227 PARELVVTAAERKNALSALAKE-DAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYF 285 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G+E Y + + DY P + LL +DE + R + TL Sbjct: 286 PGMEQYLLYFYDQAAKIT-----DYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFA 340 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G + D L Q + S + R L + Sbjct: 341 QGDLPARSADMVWSYKSLLANLLTQLVAFSL--------FAHSSDHHPYRRSVSLSAKPV 392 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 Q D E+ Q RV++ T +++ + + E L E Y S+ D Sbjct: 393 --PKFLGQWDLFGEEVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLA 450 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG-RA 542 +R V + L G +PE+ LV + + D + +R + G R Sbjct: 451 QR------------SVTLLHGSLESGFVLPEIKLVLLTEQDILPQKKKKRRIKGKEGVRV 498 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + + +Y + G + + I G + Sbjct: 499 G--------------DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGND 544 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 PI + D V + + + K+ L G + ++ +L Sbjct: 545 KL---------YIPIEQIDVVRKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKEL 595 Query: 663 HQLRELFIA 671 L Sbjct: 596 LALYAARET 604 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 69/460 (15%), Positives = 123/460 (26%), Gaps = 38/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ D L + + ++ A Sbjct: 620 FEAAFPYEETPDQLQAIAEVKQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQA 679 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q +E + GI + + L + + Sbjct: 680 AFLVPTTVLAQQHYHNFVERLEGFPVNVGILSRFQS------PAEQKETIKGLKEGTIDL 733 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + R + + + ++ATP Sbjct: 734 VVGTHRILSKDIRFRDLGFLVVDEE--------QRFGVRHKERIKMLKKNLDVLTMTATP 785 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L S V D V T D V D L+ + + +V Sbjct: 786 IPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNR 845 Query: 456 KRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + L+E V H + +++ GE+DVL+ ++ GLD+P Sbjct: 846 VQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIP 905 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DADK G + L Q GR R+ + K + E +R Sbjct: 906 NVNTIIIQDADKFGLAQ----LYQLRGRVGRSNRIAYAYLTYQKD----KVLTEVAEKRL 957 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K E G G + D+ G + V D+ K L+ Sbjct: 958 QAIKEFTELG---SGFKIAMRDLEIRGAGNILGPEQHGF-------MMAVGFDLYVKLLE 1007 Query: 634 QKIHELEGLMMQHAQN---LEFEEAAQIRDQLHQLRELFI 670 I +G Q +A + R+ + Sbjct: 1008 DAIRTYKGQEEDTRQEPRIEIQADAYLPASYISDARQKIV 1047 >UniRef50_D1I3Q7 Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I3Q7_VITVI Length = 916 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 111/390 (28%), Gaps = 43/390 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ F + + A Sbjct: 441 YVKPTPIQRHAIP-IAMAGRDLMACAQTGSGKTAAFCFPIICGILRNQLSRGGARLACPT 499 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++ + +T + G P Sbjct: 500 ALILSPTRELSCQIHEEAKKFSYKT-------------------GLKVVVAYGGAPISQQ 540 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE- 383 F L ++V + I + L E L + + K E Sbjct: 541 FRNLERGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMD 600 Query: 384 ---ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVD 433 A QT+ SAT N + + + + G + +E + Sbjct: 601 MPPPGARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRY 660 Query: 434 DLLSEIRQRA-----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 L+ ++ + LV TKR + L ++L +G +H D +ER Sbjct: 661 HLMDLLQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERA 720 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 ++ + G ++V ++ GLD+P V+ V D ++ + IGR R Sbjct: 721 LKSFKSGATPIMVATDVAARGLDIPHVAHVINFDLP-----KAIDDYVHRIGRTGRAGKS 775 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQK 577 G A + + S+AK++ E + ++ Sbjct: 776 GLATAFFNDGNLSLAKSLVELMQESNQEVP 805 >UniRef50_A5G1U8 DEAD/DEAH box helicase domain protein n=7 Tax=Alphaproteobacteria RepID=A5G1U8_ACICJ Length = 525 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 66/392 (16%), Positives = 112/392 (28%), Gaps = 23/392 (5%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 L + + + I +I I Q + N+ Sbjct: 69 LRAISEQSYETPTPIQARSIPVMLE-GHDLVGIAQTGTGKTAAFVLPILHRIAANRARPA 127 Query: 284 -----QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ + + G ++ G P + + L+V Sbjct: 128 PRACRALVLAPTRELATQIADAARTYGKFTR-PSVAVVIGGAKPGPQARRMESGVDLLVA 186 Query: 339 ESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + G+ R D L E L + Q + SAT Sbjct: 187 TPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMP 246 Query: 398 NYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 +G + D +D + + + D L + A R + Sbjct: 247 KPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVE--RAI 304 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T TK A+ +T +LE+ G +H + +R + R G VLV ++ G+ Sbjct: 305 VFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGI 364 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ VS V + S + IGR AR G AI + + I Sbjct: 365 DVDNVSHVVNFELPNV-----PESYVHRIGRTARAGAEGVAISLVEPSELPYLRDIETLI 419 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ P L + + GQ Sbjct: 420 GRHLVPGGAQPVRGLAPPHLLRARNQVARQGQ 451 >UniRef50_UPI00006A5795 PREDICTED: similar to GE24123 n=1 Tax=Ciona intestinalis RepID=UPI00006A5795 Length = 573 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 52/406 (12%), Positives = 109/406 (26%), Gaps = 46/406 (11%) Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R F F + + A++ + + + F Sbjct: 143 RPVLDFSELQFSDHIDSKLRQSNFNVPTAIQSTGWPATL-SGRDVIGIAQTGSGKTLSFI 201 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + H + + + + +A E E F G Sbjct: 202 LPALIHI-----QAQRPLGRGEGPIALVMCPTRELAVQCERVANQFAGPFIRTACAYGGS 256 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 I+ P L D+L + + +++ + + Sbjct: 257 SRNIQLDKIGAGCSILVATPGRLMDFLQHGEVNLRRCTYLVLDEADR------------- 303 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV--VDQVVRPTG--- 417 L + + K E Q SAT + + + + G Sbjct: 304 ----MLDMGFEPQIRKIIEQIRPDRQVTMWSATWPSEIRQLAKDFISTKSATHIKVGSSD 359 Query: 418 -----LLDPIIEVRPVATQVDDLLSEIRQRAAINE-------RVLVTTLTKRMAEDLTEY 465 + + + I + N+ + LV TK + L++ Sbjct: 360 LQASENIQQKFAICHSPDKFKQFKEIIIELKNANKDQFSQFPKTLVFCNTKATCDRLSQQ 419 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G R +H D +R ++ + R G ++L+ ++ GLD+ ++ V D Sbjct: 420 LRNAGLRSNAIHGDKTQSQRDSVLNNFRRGRSNILIATDVAARGLDINDIQYVINFDTP- 478 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + I IGR R G + + ++ K + + Sbjct: 479 ----PTCTDYIHRIGRTGRAGKQGTSYTLLTEENGAIVKDLISSLE 520 >UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS Length = 578 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 55/385 (14%), Positives = 109/385 (28%), Gaps = 41/385 (10%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 ++ + F + +T + Sbjct: 180 SGYKLATPIQKVAIP-VIAAGRDLMACAQTGSGKTAAFLVPILNLLLTDAVDL---EIGK 235 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + L E ++ + + G +N S + P Sbjct: 236 PQAVIVSPTRELAIQIYHEARK-FSHESYLKISILYGGTSVKYQNESIMMGCHLLIATPG 294 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ + D + + + M K Sbjct: 295 RLLDFVERAFITFDDTRFLVMDEADRML-----------------DMGFSESMRKIVTHC 337 Query: 384 --ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 QT+ SAT +G + + + G + I + Sbjct: 338 TMRAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRRK 397 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ +++ A +V TKR A+ L YL E +H D +R + +RD + Sbjct: 398 LIDILKESADG---TIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKT 454 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ VL+ ++ GLD+ V V D ++ + IGR R NG+A + Sbjct: 455 GKMKVLIATSVASRGLDIKNVKHVVNYDMP-----KTIDDYVHRIGRTGRVGNNGRATSF 509 Query: 554 GDKI-TPSMAKAIGETERRREKQQK 577 D ++A + + ++ Sbjct: 510 FDPDQDSALASDLVKILEGSDQVVP 534 >UniRef50_UPI00016C5336 ATP-dependent RNA helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5336 Length = 523 Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 115/433 (26%), Gaps = 28/433 (6%) Query: 165 MIIDQRAIL--RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 ++ + L A G + P E D LF + Sbjct: 38 DELNPDELATAHTLEPEDDAEEGDEEPVGDPADDPDHEAAPPPEVDP----AMLFADLKL 93 Query: 223 RLSLFDPLTGQIVST---IPRFTIYPKTH---YVTPRERIVQAMEEIKEELAARRKVLLE 276 L D +T I I P + + Sbjct: 94 MRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPF---LNRWRP 150 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + T+ + R + G D L LV Sbjct: 151 HTLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCV-PVYGGTGMQRQLDGLTRGCDLV 209 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + + R L E L + + + QT+ +SAT Sbjct: 210 VGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLMSAT 269 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLSEIRQ--RAAINERVL 450 + + D V P ++ D +++ + L Sbjct: 270 VPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPRQCL 329 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + KR A++L L+ + +H D+ +R +I+ R + L+ +++ G+ Sbjct: 330 IFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMSRGI 389 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ +S V D + + IGR R +G AI + I Sbjct: 390 DVSGLSHVINYDLPM-----DIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMI 444 Query: 570 RRREKQQKYNEEH 582 R ++ + Sbjct: 445 NRLIEEDRVEGFE 457 >UniRef50_D1H3Q8 Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) n=14 Tax=Viridiplantae RepID=D1H3Q8_VITVI Length = 568 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 110/379 (29%), Gaps = 41/379 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + F I H + + Sbjct: 143 YTRPTFIQAQAMPVAL-SGRDLLGCAETGSGKTAAFAIPMIQHCLAQPPVRRG---DGPL 198 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + ++ + G + P Sbjct: 199 ALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAGVNIVVATPGRF 258 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +L + S V + + L + + + + Sbjct: 259 IHHLQEGNTSLSRISFVVLDEADR-----------------MLDMGFEPQIREVMQNLPQ 301 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + V G + I+E + ++D LL+ Sbjct: 302 KHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLAL 361 Query: 439 IRQRAAINERV-------LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + + A+ ER +V K +++ E L G R LH ER +RD Sbjct: 362 LVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRD 421 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G ++LV ++ GLD+ V+ V LD ++ + + IGR R + G+A Sbjct: 422 FRNGATNILVATDVASRGLDVTGVAHVINLDLP-----KAMENYVHRIGRTGRAGSTGQA 476 Query: 551 ILYGDKITPSMAKAIGETE 569 + + I + Sbjct: 477 TSFYTDRDVFLVAHIRKAI 495 >UniRef50_Q4W7T8 VASA RNA helicase n=1 Tax=Artemia franciscana RepID=Q4W7T8_ARTSF Length = 726 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 114/410 (27%), Gaps = 42/410 (10%) Query: 196 RGEVIDI--FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT-P 252 R +++D + ++ + + + + I + Sbjct: 312 RPKILDNIKKSGYTQPTPVQ-KWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINRLIEEG 370 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + E + L E + + T ++ G ++ Sbjct: 371 CAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDT-IIKPVVVYGGVAPRYQSDKVK 429 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D++ + + + M L Sbjct: 430 SGCNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRM-----------------LDMGF 472 Query: 373 DNRPLKFEEF----EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------P 421 K + T+ SAT N E + + + + G + Sbjct: 473 MGEVKKVVYHGTMPVKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQ 532 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + +++D LL + + + LV +K+ A+ L L +H D Sbjct: 533 EVIEIDAKSRIDRLLEILTE--KEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRF 590 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R E++RD + G ++LV + GLD+ V LV + + IGR Sbjct: 591 QYQREEVLRDFKSGHRNILVATAVAARGLDIKGVGLVINYELPT-----DIDEYVHRIGR 645 Query: 542 AAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 R G AI + + ++A + ++ E + Sbjct: 646 TGRLGNTGHAISFFNPDKDSAIAGKLVNVLAAAQQTVPVFLESMASGVSF 695 >UniRef50_Q82T78 RhlE; ATP-dependent RNA helicase RhlE n=1 Tax=Nitrosomonas europaea RepID=Q82T78_NITEU Length = 498 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 47/435 (10%), Positives = 113/435 (25%), Gaps = 34/435 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ + FT+ V Sbjct: 25 YVNPTPIQAQVIP-SILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVR 83 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E R + + G + + P L Sbjct: 84 ALIMAPTRELAMQI-DESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVATPGRL 142 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + M + + Sbjct: 143 LDLVEQKAVNFSKTEILVLDEADRML-----------------DMGFLPDIKRVMALLSP 185 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQR 442 Q++ SAT + + + V ++ I + D + + Sbjct: 186 QRQSLMFSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHL 245 Query: 443 AAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ L+ TK A L + L H +H D + +R + + + + G+ +L Sbjct: 246 IRQQNLKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQIL 305 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ G+D+ ++S V + + + IGR R GKAI + Sbjct: 306 VATDVAARGIDIEKLSHVINYELP-----GNPEDYVHRIGRTGRAGSKGKAISLVSEHEK 360 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK----TKAKGRGKSR 615 + I + + + ++ + ++ G + + +S Sbjct: 361 ELLANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSAGNSRYGNKPMENGSEKSRSE 420 Query: 616 PIVEPDNVPMDMSPK 630 + + + Sbjct: 421 KHRKLPSSQKYSGSR 435 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 111/378 (29%), Gaps = 33/378 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ ++ ++ L L F + + R R Sbjct: 22 YSEPTPIQENAIPYILDGKDLLG-LAQTGTGKTAAFAVPLLQRLLESRYRAAPKSV---R 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + G + ++ P L Sbjct: 78 SLILTPTRELADQITK-NIKAYAGRTKMYTSCVVGGVPFPPQFHALQRGLDVLVATPGRL 136 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D +G+ + + + M L + Sbjct: 137 LDLHRKNGVSFDELEIFVLDEADQM-----------------LDLGFIAELEEIAYLLPK 179 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR---PVATQVDDLLSEIRQR 442 QT++ SAT + S + + V T +E + D +++ Sbjct: 180 KRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKEL 239 Query: 443 AAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +E R LV TLTK+ + L L G +H D+ ER + + + G+ L Sbjct: 240 LEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ ++S V D + + + IGR AR G AI + Sbjct: 300 VATDVAARGIDVSDISHVINFDMPN-----ATENYVHRIGRTARAGKSGTAITFCLPEDR 354 Query: 560 SMAKAIGETERRREKQQK 577 M +AI + ++ + Sbjct: 355 GMLRAIQKLIGKKIAEMD 372 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 111/663 (16%), Positives = 203/663 (30%), Gaps = 70/663 (10%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L + LE G GV F ++ + L P +V+ + A + Sbjct: 5 QEKKILPVLVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTE 64 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-R 134 + + F P +A A PS + + + R+ M E Sbjct: 65 DARFFQPADA----------RAEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLA 114 Query: 135 DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+V +V A+ P + ++ G +D A+ +L Y R + G F Sbjct: 115 PAVLVLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG ++D+F + R++LF + VE + F P+T + T+ P V + Sbjct: 175 SIRGGIVDLFSPFHEA-PARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAK 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +RI + L A K L ++ ++ M + G+E+ + Sbjct: 234 DRIGR--------LIAAVKKRSAELNLPVSV-----SRDIIDRMEQGTDTEGMESLMPLV 280 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P TLFDYLP LLV+ + + + R ET E G Sbjct: 281 Y-----ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEGRWCVPPDA 335 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + + + VV G+ D + TQ Sbjct: 336 LYLDWQAVQKEAFKKPLLSFPVLP--VSATPEDGDNTPVVETAGVTDNSAVTLMLRTQPR 393 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D LLS I + + ++ + + + +L H L Sbjct: 394 DTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVPHESL---------- 443 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + L G L I D + G +R + Sbjct: 444 DAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVR------HRSSAGKKGA 497 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + + R E +K T +G+ + + + Sbjct: 498 RDVYLDLETLKQGDLVVHVDHGIGRYEGIRKV------TVEGIANDFLLLSYRDGDRLYL 551 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +R V D+ A + ++ + +EA +I +L L Sbjct: 552 SVDRMDMARKYVGADD--------AEAPLLDKMGAKTWGRVKAKARKEAEKIAKELLDLY 603 Query: 667 ELF 669 Sbjct: 604 ARR 606 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 71/506 (14%), Positives = 141/506 (27%), Gaps = 54/506 (10%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I + L +L YAR G P EE + D Sbjct: 593 EKIAKELLDL-YARRRVQQGHG----------FHPPGQWFSDFEAGFDFEETD-----DQ 636 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 L + P V + ++ + Q Sbjct: 637 LKVINEVLSDMASSTPMDRLVCGDVGYGKTEVAMRSSFMCVCDGFQVAVLVPTTVLAEQH 696 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 GY I SRF + + L + +V +H + + Sbjct: 697 FATFSRRFA--GYPFNIACLSRFKTP----ARQKQIVADLKEGRVDIVIGTHRLLSKDVA 750 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + + + + ++ATP L S + Sbjct: 751 FKQLGLVILDEE--------QRFGVKHKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMR 802 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D V T ++ D ++ IR+ ++ + ++L++ Sbjct: 803 DISVITTPPEHRKAIKTYISEFDDAIIRTAIRKELERGGQIYFVHNNIHKIAFIADHLKK 862 Query: 469 HGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 V +H +D + E D+LV ++ G+D+P + + I AD Sbjct: 863 LVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPSANTIFINRADMF 922 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G + Q GR R+ A+G+ R+R K + + G Sbjct: 923 GLAQI----YQLRGRVGRSDEQAYAYLFIPRE----SALGKDARKRLKVLMEHSDLG--- 971 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM--M 644 G + D+ G A ++ V DM + ++Q + EL+G Sbjct: 972 SGFQIAMNDLKIRGGGAALGVSQSG-------HITAVGYDMFLQLMEQAVAELKGEPVTE 1024 Query: 645 QHAQNLEFEEAAQIRD-QLHQLRELF 669 + ++ + + + + + Sbjct: 1025 TLNPEINIPVSSFLSEAYISDIDQRM 1050 >UniRef50_Q04VV9 ATP-dependent RNA helicase (Superfamily II) n=4 Tax=Leptospira RepID=Q04VV9_LEPBJ Length = 513 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 104/359 (28%), Gaps = 20/359 (5%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I + + A LLE + + T+ + ++E Sbjct: 36 PVILKGKDIIGHAQTGTGK----TAAFAIPAIELLEVESKHLQALILCPTRELVIQVSEQ 91 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKE 359 + + G+ L + +V+ + + R + + Sbjct: 92 FRKLMKYKGNFEVVPVYGGQEIERQLKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIV 151 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--- 416 L E L + + QTI SAT L + Sbjct: 152 VLDEADEMLDMGFREDMEFILKDTPIDRQTIMFSATMTEDILTLMKRFQKHPQIIDVTHQ 211 Query: 417 ----GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 ++ I + + L I + LV TK + + E L+ G Sbjct: 212 KLSAPKIEQIYYEIQENAKGEALARLI--EYRNVKLALVFCNTKAQVDTVVELLKSRGYF 269 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH D++ +R +++ R G ++LV ++ G+D+ V V D ++G Sbjct: 270 AEALHGDLNQKQRDKVMNGFRNGNIEILVATDVAGRGIDVNNVEAVFNYDLPRDG----- 324 Query: 533 RSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + IGR R G A + K I + + K + ++ Sbjct: 325 EDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERINGIKIEAGKIPTLDDLEETKIH 383 >UniRef50_C8WFI7 DEAD/DEAH box helicase domain protein n=3 Tax=Zymomonas mobilis RepID=C8WFI7_ZYMMN Length = 506 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 49/372 (13%), Positives = 99/372 (26%), Gaps = 18/372 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ ++ V ++ + + + Sbjct: 20 LGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAH 79 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ L + ++ S L G P L Sbjct: 80 GRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLL--IGGVPMAEQQAALEKGV 137 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + + E L + QT+ Sbjct: 138 DVLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLF 197 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + + +D + ++ L +R A Sbjct: 198 SATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLR--AEK 255 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + ++ K L LE+ G V +H D+ ER + + G+ VLV ++ Sbjct: 256 DHTAIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDI 315 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 GLD+ +S V D I IGR R +G+A+ + A Sbjct: 316 AARGLDVKGISHVFNFDVPTH-----PDDYIHRIGRTGRGGASGEALTFVTPADEEAITA 370 Query: 565 IGETERRREKQQ 576 I + + Sbjct: 371 IEKLMGVEIPRL 382 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 120/393 (30%), Gaps = 23/393 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ L + + V + + + Sbjct: 11 LNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIVEKVNP 70 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K ++ L + +++ E+ N + G+ ++L Sbjct: 71 K---QKKVQALILVPTRELAIQVAKEIKELGK--NKKVYTLAVYGGKSISHQINFLKKGS 125 Query: 334 -LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++VV + + D + L E L + + + Q + Sbjct: 126 DVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNLL 185 Query: 392 VSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT L+ + + + + II + L + Sbjct: 186 FSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL--SQ 243 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 E+V++ T TK A++L E L E G +H D +R ++ + R G+ +LV Sbjct: 244 NEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVAT 303 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ V LV G R S I IGR R G AI Sbjct: 304 DVAARGLDIKGVDLVINY-----GLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQL 358 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + I + + + +E ++ +K Sbjct: 359 QNIQKKTKANIEVINEAQEKKLSSAQKDKSSQK 391 >UniRef50_UPI0000E87E35 putative ATP-dependent RNA helicase protein n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E35 Length = 427 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 102/426 (23%), Gaps = 38/426 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + E+ F + ++ Sbjct: 21 YDQPTPIQTKSIP-EIMLNKHVLASAQTGTGKTAAFVLPILDKL-----TKNRSEGRGPR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + R + G G++N P L Sbjct: 75 VLIVSPTRELATQITD-SIKKYSRYLRINSITITGGISYGLQNRMFSKPIDILVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + M K + Sbjct: 134 LDLYQQKKINFKGLEVMILDEADRMLD-----------------MGFVPDIRKIYNATSK 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 Q + SAT + + + + V + +I + +L Sbjct: 177 KQQMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDH 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + ++ T TKRMA+ L++ L + LH D+ R + I + E Sbjct: 237 FIKN-DEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETK 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 +LV +L G+D+ +S V D + I IGR R G AI Sbjct: 296 ILVATDLASRGIDVKNISHVFNYDMPRF-----AEDYIHRIGRTGRANNKGIAISLVSPT 350 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + I + + + K ++ Sbjct: 351 DREFLRKIERFTNLKIEIASIPGMEATILKEAKAPKRKSKGRSFVKKGKVFKNEANAKKR 410 Query: 618 VEPDNV 623 + V Sbjct: 411 IRSKPV 416 >UniRef50_Q8SRB2 ATP-dependent RNA helicase DBP2 n=18 Tax=Fungi/Metazoa group RepID=DBP2_ENCCU Length = 495 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 109/392 (27%), Gaps = 39/392 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ A++ + + + + F + V +++ + Sbjct: 107 FSEPTAIQGQGWPMAL-SGRDMVGIAQTGSGKTLSFILPA---LVHAKDQQPLRRGDGPI 162 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L G S + + P L Sbjct: 163 VLVLAPTRELVMQIKKVVDEFCGMF-NLRSTAVYGGASSQPQIRALHEGAEVVIATPGRL 221 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + L + + K Sbjct: 222 IDLHDQGHAPLSRVTFLVLDEADR-----------------MLDMGFEPQLRKIIPKTNA 264 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + G + I+EV + D L+ Sbjct: 265 NRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIG 324 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + ++V+V KR +DL L G LH D R +++ D R G Sbjct: 325 VLDNFK--GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRR 382 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGD 555 +L+ + GLD+ +V LV D S + IGR AR G + + Sbjct: 383 PILIATEVAGRGLDVNDVKLVINFDFP-----GSCEDYVHRIGRTARGNTKEGISHTFFT 437 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + A+ + R + + E + Sbjct: 438 VGDKANARELIRMLREANQTVPSDLEDMVRVS 469 >UniRef50_A6TTG0 DEAD/DEAH box helicase domain protein n=28 Tax=Firmicutes RepID=A6TTG0_ALKMQ Length = 549 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 105/408 (25%), Gaps = 44/408 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++++ + F + + I Sbjct: 24 TEPTPVQLQAIPPLL-AQRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQ--------A 74 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L E ++L E + G+ Sbjct: 75 LIITPTRELAIQITAETKKLA-------------------EVKGINILAAYGGQDVEQQL 115 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L +++ + + + L E L Sbjct: 116 RKLKGSIHIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPK 175 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 Q ++ SAT N + + D V + ++ + D L Sbjct: 176 RRQNMFFSATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQL 235 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++ TKR A L E L G LH D+ +R ++++ + + Sbjct: 236 FDEY--NPFMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQ 293 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 LV ++ GLD+ V+ + D + S I IGR R G AI + Sbjct: 294 YLVATDVAARGLDIEGVTHIFNYDIP-----QDGESYIHRIGRTGRAGETGMAITFMTSR 348 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K I + + QK + G + +K Sbjct: 349 DRDELKIIEKVIKMDLDVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSK 396 >UniRef50_C6CYC6 DEAD/DEAH box helicase domain protein n=89 Tax=Firmicutes RepID=C6CYC6_PAESJ Length = 578 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 54/390 (13%), Positives = 115/390 (29%), Gaps = 21/390 (5%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 + + + E + L + V + + + Sbjct: 6 ISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP---IL 62 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + + + ++ LT + +++ +EL + + G+ L Sbjct: 63 QRIDIDKEQVQALILTPTRELAIQITSELKKLAAA--VGAKVLAAYGGQDVDAQIRKLNN 120 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV I + + + L E L + A QT+ Sbjct: 121 SPHIVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTM 180 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + + + V + ++ + L+S I Sbjct: 181 LFSATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMI--ET 238 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ TK A+ L + L++ G LH D+ +R ++++ R + +LV Sbjct: 239 QRPYLAVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVAT 298 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMA 562 ++ GLD+ V+ V D I IGR R G AI + Sbjct: 299 DVAARGLDVEGVTHVFNFDVPT-----DSEIYIHRIGRTGRAGQRGTAITIASPYDRAAV 353 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKK 592 I + +++ + I + Sbjct: 354 AHIERSINAILERRTIEADGTIVKNTAPRS 383 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 254/611 (41%), Positives = 353/611 (57%), Gaps = 37/611 (6%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 + + F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ Sbjct: 71 NGVRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVV 130 Query: 64 APNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 PNKTLAAQ+ E++ + E + VE FVS++ Y PE+Y S+ + EK ++++ ++ + Sbjct: 131 VPNKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDAL 188 Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVG---MIIDQRAILRRLAE 178 R AT+A++E + VVVASVS +YGLG P Y+ L + +G + +L + Sbjct: 189 RHRATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD 248 Query: 179 -LQYARN--DQAFQRGTFRVRG-------EVIDIFPAESDD-IALRVELFDEEVERLSLF 227 L Y R +RG ++ I I+P + + +RV D V Sbjct: 249 DLLYERVMPYMDIERGQYKTTAAPDDDNCFTITIWPPYLESALDVRVRGDDGVVVACEA- 307 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + TI+P+ HY+TP ER+ +A+ IK EL + K L +E RL Sbjct: 308 -----RGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEADRLE 362 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA--------DGLLVVDE 339 QRT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV DE Sbjct: 363 QRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLVADE 422 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP--- 396 SHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATP Sbjct: 423 SHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATPGDI 482 Query: 397 -GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + KS +VD VVRP+G+LDP + V Q++ L + ++A I ER LV LT Sbjct: 483 ETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVCVLT 542 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+P V Sbjct: 543 KADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDLPSV 602 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 SLVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR KQ Sbjct: 603 SLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRRVKQ 662 Query: 576 QKYNEEHGITP 586 K+N ++ + P Sbjct: 663 HKHNVDNNLVP 673 >UniRef50_C5RIK3 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridia RepID=C5RIK3_CLOCL Length = 536 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 58/402 (14%), Positives = 123/402 (30%), Gaps = 18/402 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L DE ++ ++ + + + + Sbjct: 10 LNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGS---IILNN 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + E ++ + L + +++ EL + N + G+P L Sbjct: 67 MSEKRRVPQALILAPTRELAIQVNEELVRIAK--NMRLNILPIYGGQPIDRQLRALRNGV 124 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + + L E L + + + QT+ Sbjct: 125 DIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLF 184 Query: 393 SATPGNYELEKSGGDVV-DQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA--IN 446 SAT + S + D + I + D + + Sbjct: 185 SATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E ++ TK+ ++L ++ G V +H D++ +RM ++ + D LV ++ Sbjct: 245 EAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVA 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ V+ V D + S + IGR R GKA + K I Sbjct: 305 ARGIDVENVTHVINYDLP-----QDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQI 359 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 +T + + K+ I + + +N +K Sbjct: 360 EKTTKSKIKRNSVPTVDEIYDVKYKNVLNKVRDTIENEDLSK 401 >UniRef50_Q6YS30 DEAD-box ATP-dependent RNA helicase 5 n=6 Tax=Magnoliophyta RepID=RH5_ORYSJ Length = 512 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 64/441 (14%), Positives = 129/441 (29%), Gaps = 40/441 (9%) Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 + +V+D ++ + ++ F + F + H V + Sbjct: 100 ALPPQVLDCCKGFERPSPIQAYAWPYLLDG-RDFIGIAATGSGKTIAFGVPALMH-VRRK 157 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 A + + L L + G G + + Sbjct: 158 MGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCG-ISSVCLYGGTSKGPQISALKS 216 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P + D + + D S V + + L + Sbjct: 217 GVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADR-----------------MLDMGFE 259 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLD--------PIIE 424 A QT+ SAT + + + + + G D I+E Sbjct: 260 PEVRAILSQTASVRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVE 319 Query: 425 VRPVATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V ++ L++ + + A RVLV L KR A + L+ G +H D Sbjct: 320 VLDDRSRDSRLVALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQH 379 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + + G +++ ++ GLD+P+V +V + + IGR Sbjct: 380 DRTKALSLFKEGSCPLMIATDVASRGLDIPDVEVVINYSYPL-----TTEDYVHRIGRTG 434 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G A + + +A + R + +T G + K + G + Sbjct: 435 RAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVPP----ALTKFGTHVKKKESQIYGSH 490 Query: 603 IAKTKAKGRGKSRPIVEPDNV 623 + KA ++ + Sbjct: 491 FKEIKADAPKSTKITFGDSDE 511 >UniRef50_D1B4W7 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D1B4W7_SULD5 Length = 583 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 139/458 (30%), Gaps = 24/458 (5%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E F + L + S + I Q + Sbjct: 5 ESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQ-GHDIVAQAQTGTGKTAAFGLPTMSM 63 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 ++ N+ + + T+ +++ Y G + ++ G + Sbjct: 64 IDANQNRVQLLVITPTRELATQVSDELYSLGRFCGIKTVT-IYGGSSYSRQIGLIEKGAS 122 Query: 335 LVVDESHVTIPQIGGMYRGDRARKET-LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++V + + A K L E L + + QT+ S Sbjct: 123 VIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLLFS 182 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + + ++ + V + D ++ + Sbjct: 183 ATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDAL--E 240 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E+ +V TK+ + L+ L G + LH D++ +R +I+ R + ++LV ++ Sbjct: 241 PEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDV 300 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 GL++ ++S V S + IGR R G AI I + Sbjct: 301 AARGLNVADISHVFNYHMPF-----DPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQR 355 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-----QNIAKTKAKGRGKSRPIVE 619 IG+ + + + + L K DI + + S+ ++ Sbjct: 356 IGKKVGSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILEEEMDMSQIALK 415 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + KI + + +N+E E ++ Sbjct: 416 LLSNLLKENTPVGPDKIGLDKKTLESVVKNIEERENSR 453 >UniRef50_B4N414 GK13754 n=2 Tax=Bilateria RepID=B4N414_DROWI Length = 839 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 59/412 (14%), Positives = 113/412 (27%), Gaps = 22/412 (5%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI--KEELAARRKV 273 D+ ++ + + + + + + + Sbjct: 308 FDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQR 367 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + L + L++ NE + Y+ + G L Sbjct: 368 ELKAGEGPIGLILAPTRELSLQIYNEAKRFGKV--YNLRVVCCYGGGSKWEQSKALEQGA 425 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I + R L E + + + QT+ Sbjct: 426 EIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQTLLF 485 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDD-LLSEIRQRAA 444 SAT + + D + G L+ + V P Q + LL + + A Sbjct: 486 SATFKRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLCHLVKFLA 545 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 L+ K AE + L LH D+D +R ++I + E D+L+ + Sbjct: 546 EGS-CLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDILIATD 604 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+P + V D R + IGR R G A + A Sbjct: 605 VAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFAG 659 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + ++ + + G+ T R Sbjct: 660 HLVRNLEGADQPVPSDLLELAMKSSWFRSSR--FKQGKGKKVTPTHVGLGYR 709 >UniRef50_A3EUK2 Putative ATP-dependent helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EUK2_9BACT Length = 444 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 56/378 (14%), Positives = 112/378 (29%), Gaps = 38/378 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + ++ L F + R ++ Sbjct: 21 HASPTPIQKQSIPHVIDGRDLLGI-AQTGTGKTGGFLLPVLHKIAEGRRHGIR-----NR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + ++ G + + + P L Sbjct: 75 ALVLSPTRELATQIHQAAKDYAKYLHTNA-VLLVGGVDFIRQERNLKRNWDIVVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + L + + S V I + M Sbjct: 134 LDHVRRNNLTLANTSLVIIDEADRMLD-----------------MGFLPDINTIVRQLPK 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------DPIIEVRPVATQVDDLLS 437 Q++ SAT E + D V+ I V + ++ L Sbjct: 177 GRQSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKK 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V++ T TKR AEDL+ L + G LH D R ++ R G+ Sbjct: 237 VLDEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDL 296 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+ ++ V D ++ + IGR R G+A+ + Sbjct: 297 KVLVATDVAARGLDIDGITHVINYDLP-----QTAEDYVHRIGRTGRAGRTGRALSFFHP 351 Query: 557 ITPSMAKAIGETERRREK 574 + ++I + Sbjct: 352 ADRDIVRSIETMAGKPIP 369 >UniRef50_Q4DBF7 ATP-dependent DEAD/H RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4DBF7_TRYCR Length = 622 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 58/392 (14%), Positives = 110/392 (28%), Gaps = 39/392 (9%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 I + ++ + + + F + H + Sbjct: 86 IDLGYKEPTPIQSIAWPILLNS-RDLVGVAKTGSGKTMAFMVPAALHIMAQPPVRPG--- 141 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L L E +++ +R G G + + Sbjct: 142 DGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQIRTLRAGVHVAIAT 201 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D L ++ +++ + + M + K Sbjct: 202 PGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEI-----------------QIRKICS 244 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVD 433 QT+ SAT + D + G D + V + Sbjct: 245 QIRSDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQR 304 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDL 492 L +++ RVL+ TKR A+ L L G V +H D + +R ++ Sbjct: 305 RLEEILQKLGRQ--RVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRF 362 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R + VLV ++ GLD+ + +V D + + IGR R G A Sbjct: 363 RRDDRSVLVATDVAARGLDIKNLDVVINFDMPT-----NIEDYVHRIGRTGRAGQRGDAY 417 Query: 552 LYGDKITPSM-AKAIGETERRREKQQKYNEEH 582 + PS + + + RR ++ Sbjct: 418 SFVSGADPSKTIRDLVDLLRRANQEVPPELYE 449 >UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetazoa RepID=VASA_DROME Length = 661 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 114/405 (28%), Gaps = 26/405 (6%) Query: 192 TFRVRGEVIDIFPAESDDIALR----VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 F + ++ +L D ++ ++ + I Sbjct: 224 HFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR 283 Query: 248 HYVTPRERIVQAMEEIKEELAARRKV-LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + ++ E + + T+ + Sbjct: 284 DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAF 343 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA-RKETLVEYG 365 E+Y + G + + +V+ + + + R L E Sbjct: 344 ESY-LKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 402 Query: 366 FRLPSALDNRPLKFEEF--EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------ 417 L + QT+ SAT +G + + V G Sbjct: 403 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGAC 462 Query: 418 -LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + I + L+ + ++A +V TKR A+ L +L E + Sbjct: 463 SDVKQTIYEVNKYAKRSKLIEILSEQADG---TIVFVETKRGADFLASFLSEKEFPTTSI 519 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H D +R + +RD + G VL+ ++ GLD+ + V D + Sbjct: 520 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP-----SKIDDYV 574 Query: 537 QTIGRAAR-NVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYN 579 IGR R NG+A + D ++A + + + Sbjct: 575 HRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDF 619 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 121/443 (27%), Gaps = 44/443 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++ E + F + + P R + + Sbjct: 21 TEASPIQAESLPHTL-AGKDLIGRARTGTGKTLAFALPIIQNLTAPDGRGSRERGRLPRA 79 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + L E + G Sbjct: 80 IVIAPTRELAKQVAEEFSKSGP---------------------QLSTVTVYGGAAYGPQE 118 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L +VV I + + L E L + + Sbjct: 119 NALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPA 178 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP---TGLLD--PIIEVR-PVATQVDDLLSEI 439 A QT+ SAT + + + + VV G +E + + Sbjct: 179 ARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRTRVLAD 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 E+ +V T TKR A++L L G LH D+ +R + R G V Sbjct: 239 LLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGV 298 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+PEV LV + S + GR R G AI+ Sbjct: 299 LVATDVAARGLDIPEVDLVVQYHLP-----QDPESYVHRSGRTGRAGRTGTAIVMYGDRE 353 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + + K++ K+V A K + Sbjct: 354 NRELRNLEYRTGVQFKERPLPT---------PKEVQAASARASADLVRKVDSGVAATFQA 404 Query: 619 EPDNVPMDMSPKALQQKIHELEG 641 E + + ++ +AL + + ++ G Sbjct: 405 EAERLFSELGLEALARALAKISG 427 >UniRef50_D2LXV0 DEAD/DEAH box helicase domain protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LXV0_BACS4 Length = 500 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 63/394 (15%), Positives = 114/394 (28%), Gaps = 21/394 (5%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 VE + + + + + V Sbjct: 11 PSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPCVEQVVVEE-- 68 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 K + LT + +++ EL + G+ L ++V Sbjct: 69 -KHPQALVLTPTRELAIQVAEELNKLG--QVKGIKALPIYGGQEITRQITALKKRPQIIV 125 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + R + + L E L + QT+ SAT Sbjct: 126 ATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPGERQTLLFSATM 185 Query: 397 GNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + V ++ + D L + + E Sbjct: 186 PPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNLL--DMETPELA 243 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TKR ++LTE L G V LH D+ R ++IR + G DV+V ++ G Sbjct: 244 IIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVMVATDVAARG 303 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 LD+ +VS V D + S + IGR R G + + + I E+ Sbjct: 304 LDVNDVSHVINFDLP-----QDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRYIEES 358 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R++ KQ + V ++ N Sbjct: 359 TRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNN 392 >UniRef50_P0A9P7 Cold-shock DEAD box protein A n=201 Tax=Bacteria RepID=DEAD_ECOL6 Length = 629 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 54/434 (12%), Positives = 120/434 (27%), Gaps = 23/434 (5%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 +E L+ + + + + L L+ Sbjct: 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKA-- 74 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + T+ + E + G+ L +VV Sbjct: 75 --PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + L E L QT SAT Sbjct: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE 192 Query: 399 YELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + + + + L+ + A + ++ Sbjct: 193 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL--EAEDFDAAII 250 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK ++ E LE +G L+ D++ R + + L+ G D+L+ ++ GLD Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + +SLV D S + IGR R G+A+L+ + + + I T + Sbjct: 311 VERISLVVNYDIPM-----DSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + + + + L K + ++ ++P ++ + Sbjct: 366 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDL---DQYRALLSKIQPTAEGEELDLE 422 Query: 631 ALQQKIHELEGLMM 644 L + ++ Sbjct: 423 TLAAALLKMAQGER 436 >UniRef50_D2V713 ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2V713_NAEGR Length = 629 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 109/417 (26%), Gaps = 54/417 (12%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR- 253 R P + I + V F ++ +T Sbjct: 168 ERAGFGKPTPVQKHSIPI--------VLAGRDLLSCAQTGSGKTCAFLFPIISNLMTQPG 219 Query: 254 -------ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 ++ + L L E ++ T T ++ G Sbjct: 220 YETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGR-RTVVAYGGAAIQY 278 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + P L D + + + + ++ + + Sbjct: 279 QLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADR----------------- 321 Query: 367 RLPSALDNRPLKFEEFE----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-- 420 L + + E T+ SAT + + + + G + Sbjct: 322 MLDMGFEPQIRYIVEKTGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGST 381 Query: 421 -----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + D +L I LV TK+ A L +L ++G + Sbjct: 382 HENILQKFVYCKDDEKRDLMLEAIASVET---LTLVFVKTKKEASILEYFLMKNGFKSSS 438 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 +H D ER + + R G +LV ++ GLD+ +V V D + Sbjct: 439 IHGDKTQRERETALENFRRGITPILVATDVASRGLDINDVGHVINYDLP-----ENIEDY 493 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + IGR R N G + + +A + +++ G K Sbjct: 494 VHRIGRTGRAGNTGISTSFFTDKNNQIADDLITVLEEAKQEVPPFIVEGRDKLRYAK 550 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 107/663 (16%), Positives = 209/663 (31%), Gaps = 60/663 (9%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 P+ + +A + + LG+ S + + IA + + +R +VLAP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ F + + P+ K S + R+SA M Sbjct: 64 LCADLDFFLQDLKQPESALPGQGW--ILEFPAYHILPFKGISYHTETAANRISALSRMAN 121 Query: 133 -RRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +VV + A+ L + G +D+ A + +L Y +N + Sbjct: 122 SPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEP 181 Query: 191 GTFRVRGEVIDIF-PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG ++D++ P S LR+E F +EV+ + F P T + + + I P T Sbjct: 182 GDFCVRGSIVDVYGPPYSQ--PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEA 239 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V ++R+ + ++E+ + + ++ + GIE + Sbjct: 240 VVSKDRLQSVIHRVREKAVLADMP-------------VTKIREVVDSLKATQQFPGIEGF 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR---GDRARKETLVEYGF 366 L G +LFDYLPAD L V + + + + Sbjct: 287 VPLLYENGG----DSLFDYLPADTLCTVLDPVAASQEYEKYLEDVEENFETAQAENRLSI 342 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 + P T A G E E + V T L+ + + Sbjct: 343 PPAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKASK 402 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L + + +++ +K AE L L +G + R Sbjct: 403 ERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVGLS----------RN 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + V++G L G P SL + + + G R + R Sbjct: 453 QNWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPKHRRRKIETQRPRT---- 506 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + + +Y + G+ + + Sbjct: 507 --------ELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLEYR------- 551 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 G P+ + + + + + +L G + ++ + +I +L +L Sbjct: 552 --DGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKLY 609 Query: 667 ELF 669 + Sbjct: 610 AVR 612 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 62/463 (13%), Positives = 128/463 (27%), Gaps = 40/463 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ E D P + + ++ A Sbjct: 630 FEANFEYEETPDQAKAINDVLADMENRRPMDRLICGDVGYGKTEVALRASFKAVSDSKQT 689 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + L+ G L+ + L + + Sbjct: 690 AFVTPTTILSEQHYRTFLKRYE------GYPVKIACLNRFRKAAEKKEILKGLENGDIDI 743 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + + ++ATP Sbjct: 744 VIGTHSVLQKSVQFKDLRLVIIDEE--------QRFGVKHKETLKKIRATVDVLALTATP 795 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL--SEIRQRAAINERVLVTTL 454 L S + D V T V ++ D+++ IR A +V Sbjct: 796 IPRTLHMSMVGIRDITVINTPPEQRRPITTYV-SKFDEVIAAEAIRAELARKGQVFFVHN 854 Query: 455 TKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + + + L+ RV H + +++ E D+LV ++ GLD+ Sbjct: 855 RVQSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDI 914 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P + + I AD G + Q GR R + + +RR Sbjct: 915 PAANTILINRADMFGLAQI----YQLRGRVGRGDDQAYAYLFIPDE----SVLTRDAQRR 966 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 K + + G G + D+ G A+ + V +M + + Sbjct: 967 LKVLMEHSDLG---AGFAIAMSDLQIRGGGTILGSAQSG-------QIAAVGYEMYLQLM 1016 Query: 633 QQKIHELEGL--MMQHAQNLEFEEAAQIRD-QLHQLRELFIAA 672 + I +L+G + + +A I + + + + +A Sbjct: 1017 ETAIGQLKGEGSAPPLDPEINVDFSAFIPEWYIPDVDQRLLAY 1059 >UniRef50_C6XMJ7 DEAD/DEAH box helicase domain protein n=23 Tax=Bacteria RepID=C6XMJ7_HIRBI Length = 769 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 54/383 (14%), Positives = 101/383 (26%), Gaps = 37/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +E + F + H + Sbjct: 22 YETPTPIQAQAIPLVMEGGDILGI-AQTGTGKTAAFALPLLHHLCKLPDMPGPGAV---R 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + Q + G + P L Sbjct: 78 CLVIAPTRELASQIAEAFSKYGQ-CLSLRVLKVFGGVPIRKQMRDLHRGADVLVATPGRL 136 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + L + + Sbjct: 137 IDLMEQGAVDLSYVEKLVLDEADQ-----------------MLDLGFIHPLRRIAAAVPK 179 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 QT++ SAT + + + + + + A + LL Sbjct: 180 ERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVN 239 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ +R LV T TK A+ + L G R +H + +R + R G+ Sbjct: 240 LQDE--SIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSK 297 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ G+D+P VS V + + IGR AR GKAI + + Sbjct: 298 VLVATDIAARGIDVPGVSHVFNYEIPNV-----PEQYVHRIGRTARAGREGKAISFVSRD 352 Query: 558 TPSMAKAIGETERRREKQQKYNE 580 I R + E Sbjct: 353 EKKYLLDIQRQIRMKIPIVDLPE 375 >UniRef50_Q0G0P8 Superfamily II DNA and RNA helicase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0P8_9RHIZ Length = 457 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 114/405 (28%), Gaps = 39/405 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ + + F + H +T + + Sbjct: 25 TTPTPIQERAIPHAL-AGRDMLGIAQTGTGKTAAFALPLLHHLMT---VGGKPTTRTTKA 80 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L L++ T + G + + P L Sbjct: 81 LILSPTRELAVQIAESIADLSEGTP-ISHCVVFGGVSVRPQIQALARGVDILVATPGRLL 139 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + + + H+ + + M +K Sbjct: 140 DLMEQRAIDLRETRHLILDEADRMLD-----------------MGFVRDVMKIVGKCPDD 182 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 Q++ SAT + S + + + + P + L+ + Sbjct: 183 RQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFV 242 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + R++V T TK A LT L++ G + +H + R + + + GE DV Sbjct: 243 SK--NDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDV 300 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV +++ G+ + ++S V D S + IGR AR G+AI D Sbjct: 301 LVATDIVARGIHVDDISHVVNFDLP-----EEPESYVHRIGRTARAGRSGQAIALVDPSE 355 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + K I + ++ + D G Sbjct: 356 RAKLKQIIKLTGIDLT--PQATDYTVNVLAGELDADDGKRRGPRN 398 >UniRef50_B8ILJ8 DEAD/DEAH box helicase domain protein n=10 Tax=Alphaproteobacteria RepID=B8ILJ8_METNO Length = 506 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 105/383 (27%), Gaps = 37/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + F + Sbjct: 22 YVTPTPIQAQAVPPA-MTGRDLCGIAQTGTGKTAAFALPILHRL---------------- 64 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A + + T+ + + G + G Sbjct: 65 ---ASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGK-FLPFSTTVVFGGVTIGRQ 120 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V + + D L E L + + Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLS 437 A Q+++ SAT + + D V + + + + L + Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +R +RVLV T TK A+ + LE+ G +H + +R + R G Sbjct: 241 ILRDE--SIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTC 298 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV ++ G+D+ V+ V D + + IGR AR +G AI + ++ Sbjct: 299 RVLVATDIAARGIDVEGVTHVVNFDLPNV-----PEAYVHRIGRTARAGADGLAISFCNE 353 Query: 557 ITPSMAKAIGETERRREKQQKYN 579 + + I R++ + Sbjct: 354 EERAYLRDIERLTRQKVPEMAIP 376 >UniRef50_Q31AC4 DEAD/DEAH box helicase-like protein n=9 Tax=Prochlorococcus marinus RepID=Q31AC4_PROM9 Length = 593 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 127/430 (29%), Gaps = 17/430 (3%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + LS + + + + L + Sbjct: 58 FNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNK 117 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E + + T+ + E E+ + G L + Sbjct: 118 EL---NAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDV 174 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + I ++ + L E L + Q + SA Sbjct: 175 VVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSA 234 Query: 395 TPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAA-INERVL 450 T N + + D +I + + Q L +++ NE V+ Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNNEGVI 294 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TK + + E LE G V L+ DI +R + L+ G D+LV ++ GL Sbjct: 295 IFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARGL 354 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ + LV D + + IGR R G+AIL+ + + + + Sbjct: 355 DVERIKLVVNYDFPF-----DKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENST 409 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 R + ++ I + + K I + ++ + K+ I DN+ S Sbjct: 410 RTKIEEINIPSNKIINEKRMEK---LIENVNESSLAKEDNEENKALIIDVLDNLKEKHSM 466 Query: 630 KALQQKIHEL 639 + + Sbjct: 467 DDSNIAMAAI 476 >UniRef50_A8REA9 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REA9_9FIRM Length = 572 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 92/331 (27%), Gaps = 17/331 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 +++ + T+ + + + Sbjct: 44 GRSNTGTGKTAAFGIPAIEMVQPQDKYANALIICPTRELVTQVAMELRKFSKYKEGVKIV 103 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALD 373 G+P L +VV + + + R L E L Sbjct: 104 PIYGGQPIERQIQLLKRGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFK 163 Query: 374 NRPLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR----- 426 + QTI SAT + + + D V I+ Sbjct: 164 EDIEEILSLMPSERSYQTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYY 223 Query: 427 -PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + + L + E ++ TK+M ++L L +H + LH D+ R Sbjct: 224 EVPRGKKANALRVLLNHYD-PELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFR 282 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ R G +L+ ++ G+D+ +V LV D + I IGR R Sbjct: 283 SRVMEQFRSGSMPILIATDVAARGIDVDDVDLVINFDIP-----QDNEYYIHRIGRTGRA 337 Query: 546 V-NGKAILYGD-KITPSMAKAIGETERRREK 574 G AI S K I + K Sbjct: 338 GKKGLAITLISGGRQRSELKNIMRYTKTNIK 368 >UniRef50_Q2FKY7 DEAD/DEAH box helicase-like n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FKY7_METHJ Length = 531 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 51/391 (13%), Positives = 115/391 (29%), Gaps = 20/391 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L ++ + + I + Sbjct: 9 LQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIELCQP 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 N+ ++ L + +++ EL + + G+P L Sbjct: 69 ---ANRNVQTIVLCPSRELAVQVGTEL-NKLAMHKKGISILPVYGGQPIERQIKALSRGV 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ I I D L E L + QT+ + Sbjct: 125 QIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVIL 184 Query: 393 SATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT L+ S + + ++ + D L+ + Sbjct: 185 SATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVL--EFYQ 242 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +R ++ T+ + ++ L+ G LH + +R +++ R G+ ++L+ ++ Sbjct: 243 PQRTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDV 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ E+ LV D + + + IGR AR G+AI + + Sbjct: 303 AARGIDVEEIDLVCNFDFP-----QDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRD 357 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + + R + I + + D Sbjct: 358 VRRSTRAEPEPLPIPTLREIGGKKATTTLAD 388 >UniRef50_B9ETM9 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9ETM9_ORYSJ Length = 468 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 48/409 (11%), Positives = 111/409 (27%), Gaps = 48/409 (11%) Query: 209 DIALR----VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 +R V + ++ ++ + + + + E Sbjct: 87 PKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYL 146 Query: 265 EELAARRK--VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +L L + +++ + + P Sbjct: 147 LPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQI----------QQEATKFGVEIVIATP 196 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D + + + +++ + + M + + K Sbjct: 197 GRLIDMIESHHTNLRRVTYLVLDEADRMLD-----------------MGFEPQIKKIVSQ 239 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDD 434 QT+Y SAT + + + D G + +E+ + + + Sbjct: 240 IRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNK 299 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L++ + R+L+ TK+ + +T L G +H D ER ++ + + Sbjct: 300 LVNLLEDIMD-GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKS 358 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G+ ++ ++ GLD+ +V V D S + IGR R G A + Sbjct: 359 GKSPIMTATDVAARGLDVKDVKYVINYDFP-----GSLEDYVHRIGRTGRAGAKGTAYTF 413 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 AK + ++ + G Sbjct: 414 FTAANARFAKDLINILEEAGQKVSPELANMGRGAPPPSSGHRDRYRGYG 462 >UniRef50_C4XQY7 ATP-dependent RNA helicase n=7 Tax=Deltaproteobacteria RepID=C4XQY7_DESMR Length = 496 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 62/471 (13%), Positives = 119/471 (25%), Gaps = 37/471 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E V L F + +T A Sbjct: 21 YETPTPIQAEAVPH-VMEGHDLMGLAQTGTGKTAAFLLPILHRLITNP-----ARTRSPR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + T+ + G + + P L Sbjct: 75 TLILAPTRELAEQIFRSTLDFMRGTR-LRATVIYGGVGMFPQVRALRQGVDVIVACPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + + + M+ + Sbjct: 134 LDHLNQGNVRFDGLETLVLDEADHMFD-----------------MGFLPDIKRILAALPA 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP--IIEVRPVATQVDDLLSEIRQRA 443 QT+ SAT + + D V G L P +E + + Sbjct: 177 KRQTLLFSATMPPAISGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLL 236 Query: 444 AINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + V+V T TK A++L + L G + L ++ +R + R G F +LV Sbjct: 237 GEAGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +V+ V D + + IGR R G+A + Sbjct: 297 ATDIAARGIDVSQVAHVVNFDIP-----DTAEAYTHRIGRTGRAERDGQAHTFVTGEDMG 351 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT--KAKGRGKSRPIV 618 M +AI ++ ++ + A + G G + Sbjct: 352 MVRAIESHMKKPLPRRNVEGFEPEPGEFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQG 411 Query: 619 EPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + P+ + + A + R + Sbjct: 412 DRPYGDRPRGPRPEGARADSARDDRPRSDRPRSDRPAADRPRSDRPRTERQ 462 >UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0C015_PARTE Length = 532 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 66/515 (12%), Positives = 145/515 (28%), Gaps = 54/515 (10%) Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + + + I + + R + A + Sbjct: 50 EYLDEHSIVVEQNDIQVPQPFIEW---------KDCQFPNQLNKRISLK----AYNRPTP 96 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 ++ +F + + + + H + R++ L Sbjct: 97 IQASVFP-IIMSGHDLIGIAQTGSGKTIAYLLPGLVHIESQRKKGGPM------MLILVP 149 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L ++ + + G + + P L D+L A Sbjct: 150 TRELAMQIQEHISYFSEAYNMNSACI-YGGADKRPQEMALARDPDIVVATPGRLIDFLDA 208 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + +++ + + L + + K + + QT++ Sbjct: 209 QVTNLHNVTYLVLDEADR-----------------MLDMGFEQQVRKIDSYIREDRQTVF 251 Query: 392 VSATPGNYELEKSGGDVVD-QVVRPTGLLDPII-------EVRPVATQVDDLLSEIRQRA 443 SAT + + + G + I + + + L I + Sbjct: 252 FSATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILEEL 311 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + ++VL+ TK+ EDL YL EHG LH D +R ++++ + + +L Sbjct: 312 SNKDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCAT 371 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI--TPS 560 ++ GLD+ ++SLV D + + IGR R G++I P Sbjct: 372 DVASRGLDVRDISLVINYDFPN-----QIDNYVHRIGRTGRAGDKGRSITMITLDAMDPR 426 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 +AK + + + E+ + + K N S + Sbjct: 427 VAKQLVDLLKDSEQVVNDDLYDFAYSKPYQKSKRPNQRKKPNDKPITQSKPVNSNNLNTQ 486 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + KA + F +A Sbjct: 487 KPQQKQFNLKASSPVKQSTSSMPPPPELKKAFSDA 521 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 100/665 (15%), Positives = 227/665 (34%), Gaps = 75/665 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 +N F + + + +++ + G+ K ++ DL R + + + Sbjct: 1 MNDVFLYPLQNSKEYKDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSS 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++Y ++ + + Y+ D + + + + E +L Sbjct: 61 DLEAKKVYEDLSFYMEDK--------------VEYLGFQDIYFYHLDAKDRNEEAKKLKV 106 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + +++V S+ A+ + L + H VG +D + +L L Y R Sbjct: 107 LLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVS 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F +RG +ID+F E +R+ELFD+E++ + FD + + + + +F+I P Sbjct: 167 KIEGFGQFSIRGGIIDVFSLEY-TNPIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ P + L K + + T +++ ++ Y G Sbjct: 226 SREFIYPEKT----------------TDALVKLKKETTKNTDEGTFQNIDYISSKTYFEG 269 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENY ++ ++F YL D ++ +++ + R + +E G Sbjct: 270 AENYIDYIYPE----ENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERG 325 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + +++ +++ S +++ R Sbjct: 326 LAIKNQGKLLYHYTDLEYLVKDKSVVLNSLLPKSINNFSIKSIINFESREVPT------- 378 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD L+ E+ + ++++ T T A L + L + G + +R Sbjct: 379 --FNGKVDLLVEELNRLKYNGYKIILATNTLERANKLGKDLLDKGLETTI------SKDR 430 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ V++ + G + V I D + G + RA++ Sbjct: 431 DIEIKS-----SQVIIVPAHINSGFQYKSIKFVVITDNEMIGVYK----------RASKT 475 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 N K + +Y IT + K + I+ G + Sbjct: 476 SNKKVKKGKKIESFLDLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGDNL- 534 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 PI + D V + + + K+++L A+ +E + L +L Sbjct: 535 --------YVPIDQMDKVQKYIGAEVEKVKLNKLGTNEWTKAKAKVKKEIEDMTKDLIEL 586 Query: 666 RELFI 670 Sbjct: 587 YAKRE 591 >UniRef50_Q2RQT0 DEAD/DEAH box helicase n=59 Tax=root RepID=Q2RQT0_RHORT Length = 799 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 64/474 (13%), Positives = 131/474 (27%), Gaps = 49/474 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++V+ V+ + FT+ +A + Sbjct: 21 YTTPTPIQVQAIP-YVQMGRDVLGIAQTGTGKTASFTLPMIDIL-----ASGKAKARMPR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E L + Q + G + P L Sbjct: 75 SLILAPTRELATQ-VSENFTLYGKYQKLSMALLIGGESMNEQQKVLDRGVDVLIATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D +L+ D + I + M + Sbjct: 134 IDLFERGSILLRDVKVLVIDEADRMLD-----------------MGFIPDVERIVALLPK 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT++ SAT + +++ ++ + + + + + L Sbjct: 177 IRQTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQL 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R+ N + KR + L + L HG + LH D+ R E + + E Sbjct: 237 LRRETVTN--AFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQ 294 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 ++V ++ G+D+ EVS V D I IGR R G+A Sbjct: 295 LMVCSDVAARGIDVTEVSHVFNFDVPTH-----PEDYIHRIGRTGRAGRLGRAYTLATPE 349 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKTKAKGRGKSRP 616 +AI + E + + + V + + +G +S Sbjct: 350 DAKYLRAIENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRPERGARRSGR 409 Query: 617 IVEPDNVPMDMSPKALQ--------QKIHE-LEGLMMQHAQNLEFEEAAQIRDQ 661 P ++P+ + + L + +E +A + ++ Sbjct: 410 GSADAERPRPLAPERAANDQAPVERPAVEKTLAEQPVAERPPVERGQAERTAER 463 >UniRef50_B7S475 Predicted protein n=2 Tax=Bacillariophyta RepID=B7S475_PHATR Length = 575 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 103/361 (28%), Gaps = 19/361 (5%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE--EQRLTQR 289 + + + + + V + + Sbjct: 161 PTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVFHQHLVKQTRIQGFTKPILLVLAP 220 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + E G R + G L V+ I Sbjct: 221 TRELSVQILEEAQKFGRPLGIRSVCC-YGGASKHPQIAALQRGVECVIATPGRLNDLIEM 279 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYELEKSGGD 407 + + L E L + + QT+ SAT + Sbjct: 280 RKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENRQTLLFSATWPKEIQALAHDF 339 Query: 408 VVDQVVRPTG---------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + G + I + + ++D L +R + +++V K Sbjct: 340 LKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQILRDLM--HGKIIVFVAKKIS 397 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 DL L E G V LH D ER +++ + G+ VL+ ++ GLD+ +V +V Sbjct: 398 CNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVLIATDVAARGLDVKDVGVV 457 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + IGR R GKA + + A + + + +++ Sbjct: 458 VNYDMPS--GVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDRKNATQLVQVLTKAQQEIP 515 Query: 578 Y 578 Sbjct: 516 P 516 >UniRef50_B1ZXI6 DEAD/DEAH box helicase domain protein n=3 Tax=Verrucomicrobia RepID=B1ZXI6_OPITP Length = 594 Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats. Identities = 56/413 (13%), Positives = 106/413 (25%), Gaps = 17/413 (4%) Query: 207 SDDIAL-RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + + L E + + + T+ V Sbjct: 1 MEKRPFAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAI 60 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R L + + T+ + E G+ Sbjct: 61 PALERVDPKLRAVQ----VLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQ 116 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L A +V+ + + + + L E L K Sbjct: 117 YRALAAGSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVP 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ 441 + Q ++ SAT E D + +E L + + Sbjct: 177 VPRQLLFFSATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTR 236 Query: 442 RAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +V TK M +DL E+L G V LH D+ +R ++ R F+ Sbjct: 237 LIDVHDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEF 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ ++ GLD+ ++ +V D IGR R G+A + Sbjct: 297 LIATDVAARGLDVDDLEVVFNYDLPN-----DAEDYTHRIGRTGRAGKSGRAFTFVSGQE 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 +A+ + ++ + + N I A + Sbjct: 352 IYKLQAMVRWAKLDLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRM 404 >UniRef50_Q81IT9 DEAD-box ATP-dependent RNA helicase cshA n=84 Tax=cellular organisms RepID=CSHA_BACCR Length = 533 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 64/404 (15%), Positives = 116/404 (28%), Gaps = 17/404 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L D ++ + + + + L + Sbjct: 7 LGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDT 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 E+ + + T+ + E Y G R L G+ L Sbjct: 67 HKESVQG----IVIAPTRELAIQVGEELYKIGKHKRVRIL-PIYGGQDINRQIRALKKHP 121 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V + I R L E L QT+ Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INE 447 SAT + + + + + P I+ + Q + + E Sbjct: 182 SATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPE 241 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V TKR ++L+E L G +H D+ +RM ++R + G +VLV ++ Sbjct: 242 LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAA 301 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ V+ V D + S + IGR R G A+L+ K I Sbjct: 302 RGLDISGVTHVYNFDIP-----QDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 T +R+ + + + +N K Sbjct: 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKR 400 >UniRef50_C9RPH4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPH4_FIBSS Length = 486 Score = 268 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 57/428 (13%), Positives = 114/428 (26%), Gaps = 37/428 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK- 264 ++ +E L F + + + Sbjct: 21 YETPTPIQERSIPSLLEGKDLLGI-AQTGTGKTAAFALPILQRLL----DSGKFRSPKTC 75 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + Q T G + P Sbjct: 76 RALILLPTRELAIQVEDCFREYAQFTA-ISTACIFGGVNDNPQKQKLIRGVDVLVATPGR 134 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + + + M K Sbjct: 135 LLDLIGQKAISLKKLEFFVLDEADRMLDMGFIH-----------------DIRKVVAMLP 177 Query: 385 LAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG----LLDPIIEVRPVATQVDD--LLS 437 Q ++ SAT + + + + V ++ I + + LL Sbjct: 178 QDRQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLK 237 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ ++VLV TK A+ + LE+ G + +H + R E + + + + Sbjct: 238 ELLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQI 297 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ G+D+ +VS V D + + IGR AR G AI + Sbjct: 298 RVLVATDIAARGIDVDDVSHVFNYDLPN-----EHETFVHRIGRTARAGKEGVAISFCSP 352 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 S + I + R + + + + P + +++ +A+ R Sbjct: 353 DEESDLRGIEKLTRVKIPEGDQSIYENLPPPQKETAESMMRNSRGRMSREEAQARAAETR 412 Query: 617 IVEPDNVP 624 + Sbjct: 413 NNRGNRKG 420 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 268 bits (684), Expect = 7e-70, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 122/398 (30%), Gaps = 37/398 (9%) Query: 217 FDEEVER-LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE--LAARRKV 273 F ++ L + + I T + + + A + Sbjct: 284 FPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLVHAAAQP 343 Query: 274 LLENNKLLEEQRLTQRTQFDLEM------MNELGYCSGIENYSR-----FLSGRGPGEPP 322 L + L + +++ E + E+ R + G P Sbjct: 344 PLAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTACVYGGVPR 403 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L +++ I + G+ R L E + + + K Sbjct: 404 QGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQVRKIFS 463 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + V G + IEV Sbjct: 464 QVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVVSSNQLQ 523 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LLS +++ ++ L+ TKR + L L R +H D + ER I+ D Sbjct: 524 HRLLSVLQEEV-TGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHDF 582 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R G+ ++L+ ++ GLD+ +V V D ++ S I IGR R G AI Sbjct: 583 RKGDCEILLATDVASRGLDIQDVKFVINYDVP-----KNIESYIHRIGRTGRAGNKGTAI 637 Query: 552 LYG-----DKITPSMAKAIGETERRREKQQKYNEEHGI 584 + +MA+ I E R Q+ + I Sbjct: 638 SFFQYDFYSPEKVTMARKICEVM-RSVGQEPPADLEKI 674 >UniRef50_Q11039 Cold-shock DEAD box protein A homolog n=27 Tax=Bacteria RepID=DEAD_MYCTU Length = 563 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 68/446 (15%), Positives = 126/446 (28%), Gaps = 28/446 (6%) Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + PA S +++ + + + + + + + Q Sbjct: 5 EYSPAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDV----VGLAQTG 60 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + + T+ + E G + G Sbjct: 61 TGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGS 120 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L +VV I + R L E L + + Sbjct: 121 SYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERI 180 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQV 432 Q SAT + S + D + A ++ Sbjct: 181 LSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKM 238 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L + E ++V TK+ E++ E L G + D+ +R I L Sbjct: 239 DALTRVL--EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITAL 296 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R G+ D+LV ++ GLD+ +S V D S + IGR R G A+ Sbjct: 297 RDGDIDILVATDVAARGLDVERISHVLNYDIPH-----DTESYVHRIGRTGRAGRSGAAL 351 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 ++ + KAI + R+ + + + Q + K I G Sbjct: 352 IFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGP------GI 405 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIH 637 R +VE D+ + + Sbjct: 406 ELFRRLVEEYEREHDVPMADIAAALA 431 >UniRef50_D2NRF7 Superfamily II DNA and RNA helicase n=3 Tax=Bacteria RepID=D2NRF7_9MICC Length = 732 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 111/400 (27%), Gaps = 37/400 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +E L F + + Sbjct: 81 YEKPSPIQEQTIPLLLEG-HDVVGLAQTGTGKTAAFALPALSRM---------------A 124 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 ELA V + + T+ + E + G P Sbjct: 125 ELADINGVSR-----DTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQ 179 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV I + + L E L K E Sbjct: 180 LAGLRRGAQVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTP 239 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 + Q SAT N + + + D + + ++D + Sbjct: 240 DSKQVALFSATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTR 299 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++V TK+ E++ + L+ G ++ DI R + LR G Sbjct: 300 VL--EVENYDGIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRI 357 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D+LV ++ GLD+ +SLV D S + IGR R G AIL+ Sbjct: 358 DILVATDVAARGLDVERISLVVNYDIPH-----DTESYVHRIGRTGRAGREGAAILFVTP 412 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 M + I + R++ + + + I Sbjct: 413 REKYMLRQIEKATRQKVEPMHMPTAEAVNETRKQRFAQQI 452 >UniRef50_D1Y000 ATP-dependent RNA helicase DeaD family protein n=2 Tax=Prevotella RepID=D1Y000_9BACT Length = 589 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 58/456 (12%), Positives = 132/456 (28%), Gaps = 25/456 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L D ++ L V I + + Sbjct: 6 LDLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGK----TAAYLLPILS 61 Query: 274 LLENNKLLEEQ---RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP---PPTLFD 327 L + E+ + T+ + +++ G Sbjct: 62 KLADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIK 121 Query: 328 YLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +++ I I G + L E L + Sbjct: 122 SLALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPST 181 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRP--TGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 QTI SAT + + + + + + I+ + I+ Sbjct: 182 CQTIMFSATMPSKIEDLAKTLLKEPEMVKLAVSKPAEKIQQSAYVCYETQKIEIIKDIFK 241 Query: 445 IN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 RV++ + +K+ + + L +HSD+D +R +++ + G+ DVLV Sbjct: 242 AGDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVA 301 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 +++ G+D+ ++++V D + IGR AR G AI + + Sbjct: 302 TDIVARGIDIDDITMVINYDVPH-----DVEDYVHRIGRTARADRDGVAITFVNGDDIYY 356 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + I + ++ + E G P+ + + AK + + + + Sbjct: 357 FQQIESFLEKTIEKNRLPEALGEGPEYKS----NGRPSKNKKAKNRRRHDRDQQSHKDKK 412 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + Q + + + E+ Sbjct: 413 SNYRRVKNRQEQPAPTDEKEQHKPQTSEKKSEKVQD 448 >UniRef50_C6WW85 DEAD/DEAH box helicase domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW85_METML Length = 576 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 64/406 (15%), Positives = 115/406 (28%), Gaps = 24/406 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + T + + + + Sbjct: 6 LNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALNLLAT 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL-FDYLPAD 332 E+ + T+ +NE G + R + G P L L Sbjct: 66 PHESRSRGPRILVLTPTRELAAQVNEAARKYGK--FLRARTVSIVGGMPYPLQNKLLSQP 123 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + + R + L E L + E + QT+ Sbjct: 124 LDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQTLL 183 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + ++ + T + LL + A Sbjct: 184 FSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL-IAP 242 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++ T TKR A+ L E L G + LH D+ R + LR G+ VLV + Sbjct: 243 EVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLVATD 302 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + G+D+ ++ V D K + IGR R N G AI + + + + Sbjct: 303 VAARGIDVHGITHVINYDLPKF-----AEDYVHRIGRTGRANNTGIAISFASNMDRHLLR 357 Query: 564 AIGETERRREKQQKYNEEHGI------TPQGLNKKVVDILALGQNI 603 I + R + P G + G Sbjct: 358 KIEQYTGNRLEASVIEGFEPKRPVKMDGPSGGRRDGHKAGGRGGFK 403 >UniRef50_Q8IAU1 RNA helicase, putative n=10 Tax=Plasmodium RepID=Q8IAU1_PLAF7 Length = 941 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 51/399 (12%), Positives = 111/399 (27%), Gaps = 33/399 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR-------ERIVQ 258 ++ + + + + + + H + E+ + Sbjct: 382 YDKTTPIQ-KYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 440 Query: 259 A------MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + L L + ++ T ++ G + + Sbjct: 441 TSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETG-IKPVVLYGGNNIKTQLSNLD 499 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D L + + + + + + M + + + + +P Sbjct: 500 KGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGND 559 Query: 373 DNRPLKFEEFEALA-------PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 ++ + E QTI SAT + + G + E Sbjct: 560 NDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEY 619 Query: 426 -----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 V + N ++ TKR A+ + +L +H D Sbjct: 620 IKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDK 679 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER ++ + G ++LV ++ GLD+ + V D + I IG Sbjct: 680 SQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLP-----SNIDDYIHRIG 734 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 R R N G A + ++ ++ K + T +Q Sbjct: 735 RTGRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIPR 773 >UniRef50_P42305 ATP-dependent RNA helicase dbpA n=99 Tax=Firmicutes RepID=DBPA_BACSU Length = 479 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 56/430 (13%), Positives = 124/430 (28%), Gaps = 21/430 (4%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + L + L + + + I V + L + Sbjct: 12 DILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELAN----WD 67 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + + T+ + E G + + L +VV Sbjct: 68 ENKPQALILTPTRELAVQVKEDITNIGRFKRIKA-TAVFGKSSFDKQKAELKQKSHIVVG 126 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I DR + E L + + T+ SAT Sbjct: 127 TPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLP 186 Query: 398 NYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVT 452 + S + + GL IE + + ++ S ++ + ++ Sbjct: 187 QDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIF 246 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK LT+ L++ G +H + +R +++ + + GE+ LV ++ G+D+ Sbjct: 247 CRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDI 306 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 +SLV D + S + GR R GKAI + I E Sbjct: 307 ENISLVINYDLPL-----EKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 361 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 ++ + + + + + + ++ + + + Sbjct: 362 EIQKIEAPSQEEVARKKPE-FLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD 420 Query: 632 LQQKIHELEG 641 I +++G Sbjct: 421 FVGTIAKIDG 430 >UniRef50_C6ATS7 DEAD/DEAH box helicase domain protein n=15 Tax=Alphaproteobacteria RepID=C6ATS7_RHILS Length = 580 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 106/363 (29%), Gaps = 15/363 (4%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA-RRKVLLENN 278 + L T + + + + L + Sbjct: 34 IIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPD 93 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ + + E ++ S ++ G L ++V Sbjct: 94 NRTTRTLILAPTRELVNQIAESLKKFIRKS-SLRINVVVGGVSINKQQLQLEKGTDILVA 152 Query: 339 ESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I R L E L + K + QT+ SAT Sbjct: 153 TPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMP 212 Query: 398 NYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQRA--AINERVLV 451 + +G +VD V D + + +D +R+ + R +V Sbjct: 213 KAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAMV 272 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK AE L ++LE G V +H + +R ++ R G L+ ++ G+D Sbjct: 273 FLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGID 332 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 +P VS V D + + IGR AR G AI + + + I Sbjct: 333 IPAVSHVYNYDLP-----EVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLMG 387 Query: 571 RRE 573 Sbjct: 388 IDI 390 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 66/447 (14%), Positives = 130/447 (29%), Gaps = 30/447 (6%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D V+ L + + + L + Sbjct: 22 DNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ-- 79 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++ L + +++ +L S + + G P L +VV Sbjct: 80 --GVQSLILAPTRELAMQVAEQLREFSRGQ--GVQVVTVFGGMPIERQIKALKKGPQIVV 135 Query: 338 DESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSAT 395 I + + D L E + + + QT+ SAT Sbjct: 136 GTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSAT 195 Query: 396 PGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + T ++ + + D + + E Sbjct: 196 MPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFL--DVHQPEL 253 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V TKR ++LT L G + LH DI +R+E+++ + + ++LV ++ Sbjct: 254 AIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAAR 313 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ VS V D + S IGR R G A+ + + I + I + Sbjct: 314 GLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 368 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 R+ + + DI +N K++ + + + Sbjct: 369 ANGRKMSALRPPHRKEVLQAR----EDDIKEKVENWMSKKSES---RLKRISTELLNEYN 421 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEE 654 + + EL + L FE+ Sbjct: 422 DVDLVAALLQELVEANDEVEVQLTFEK 448 >UniRef50_C1D673 RhlE3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D673_LARHH Length = 582 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 50/384 (13%), Positives = 96/384 (25%), Gaps = 34/384 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ E V F + Sbjct: 24 YTEPTPIQREAIAP-VLAGRDLMAAAQTGTGKTAGFALPLLQRLAATHPHPHP--AGRPR 80 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++ G + + P L Sbjct: 81 GLVLTPTRELAAQVG-ESIATLGTHLPLTSLVIFGGVRVKPQIEALTQRVDILIATPGRL 139 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + L K + Sbjct: 140 IDLAKQEAVDLSGVEILVLDEADR-----------------MLDMGFIRDVRKVLKLLPA 182 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q + SAT + + + D + + E + +LL+ + Sbjct: 183 ERQNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHL 242 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++VLV T TK A L E L + G +H + R + + + G V Sbjct: 243 V-ESRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRV 301 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+D+ E+ V + + IGR R + G+A+ Sbjct: 302 LVATDIAARGIDISELPQVVNYELPNV-----PEDYVHRIGRTGRAGSPGEAVSLVCVDE 356 Query: 559 PSMAKAIGETERRREKQQKYNEEH 582 + I R Q Sbjct: 357 LKLLADIEAFIGRPIPQFTEPGFE 380 >UniRef50_D2QGG1 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=D2QGG1_9SPHI Length = 485 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 44/383 (11%), Positives = 101/383 (26%), Gaps = 37/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + F I E ++ + Sbjct: 21 YTNPTPIQEKAIP-ILLSRRDLLGCAQTGTGKTAAFAIPILQLL---SEERSKSTGGPRR 76 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 E + E + G + + P Sbjct: 77 IKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNTLKAGVDVLIATPGR 136 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + D + + L + K Sbjct: 137 LLDLMNQGFISLRDVQFFVLDEADR-----------------MLDMGFIHDVKKVITKLP 179 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 Q+++ SAT + + + + ++ + + L+ Sbjct: 180 THRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVH 239 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + LV TK A+ + + L + G +H + R + + + E Sbjct: 240 ILDD--KNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRET 297 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ G+D+ E+S V + + + IGR R + G A+ + D Sbjct: 298 RVLVATDIAARGIDVDELSHVINYELPNI-----PETYVHRIGRTGRAGHDGIALSFCDA 352 Query: 557 ITPSMAKAIGETERRREKQQKYN 579 + I + +R + Sbjct: 353 EETEYLRDIHKLIGKRVPVIDNH 375 >UniRef50_Q2NEZ7 Predicted helicase n=20 Tax=cellular organisms RepID=Q2NEZ7_METST Length = 583 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 56/441 (12%), Positives = 125/441 (28%), Gaps = 15/441 (3%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ-AMEEIKEELAARR 271 +++ D + P ++ Sbjct: 3 KLKFKDLNISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPL 62 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 +++ + + T+ + E + + G+P L Sbjct: 63 LENIDSEDNNLQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQK 122 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +++ + I + + L E L E Q + Sbjct: 123 GVQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFL 182 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE 447 SAT L+ + + + + +E + + D L + + +++ Sbjct: 183 LFSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHD 242 Query: 448 --RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 LV TKR + L +L+ G LH D+ +R ++ + G ++LV ++ Sbjct: 243 FDLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDV 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ V V D + IGR R GKA + + Sbjct: 303 AARGIDVGGVEAVFNFDIPN-----DNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRD 357 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I + + +Q + + + ++ +K +VE D Sbjct: 358 IQRYAKTKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKET--YIIEKLVEEDYNS 415 Query: 625 MDMSPKALQQKIHELEGLMMQ 645 +D++ L+ I + + Sbjct: 416 IDIAATLLKGVIDDKRYKEEE 436 >UniRef50_C5CGQ2 DEAD/DEAH box helicase domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGQ2_KOSOT Length = 524 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 54/452 (11%), Positives = 124/452 (27%), Gaps = 23/452 (5%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + + + + + I + +L+ + Sbjct: 15 LNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGK----TAAFGIPLLEMLDYSSK 70 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + T+ + + G+ + L +VV Sbjct: 71 KVQALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKGIQVVVGTP 130 Query: 341 HVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + D + L E L Q SAT Sbjct: 131 GRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITMFSATMPKA 190 Query: 400 ELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTL 454 + + + + + +E + + + + LV Sbjct: 191 IIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQLSLVFCN 250 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK+ ++L L+ G V LH D+ R ++ R VLV ++ G+D+ + Sbjct: 251 TKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAARGIDVDD 310 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 + V D + E + IGR R GKA + + + I + + Sbjct: 311 IEAVFNYDIP-----QDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLREIQRYTKIKI 365 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K E + + + + G+ + P VE + + + + Sbjct: 366 KSLNVPSEKDVNTKRMESFL------GEINDILEQGNLSDYVPAVE-ELIARGYTSMEIA 418 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + ++ ++QN + ++ +L Sbjct: 419 AALIKMNVSKRAYSQNEAGAKNNNRDREMIKL 450 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 58/461 (12%), Positives = 129/461 (27%), Gaps = 41/461 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKT---HYVTPRERIVQAMEEIKEELAARRKVLLEN 277 ++ + D + + I I + + + + E Sbjct: 13 LDINRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIEKIDIEQEK 72 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + T+ + + G L +V+ Sbjct: 73 PTA--QVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLK-KAHIVI 129 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + L E L + QT+ SAT Sbjct: 130 GTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSATM 189 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVL 450 + + + ++ + + ++L+ + + + Sbjct: 190 PPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGS-KLTI 248 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKRM +DLT++L ++G LH DI ER ++ + + + +LV ++ G+ Sbjct: 249 IFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGI 308 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V V D ++ I IGR AR G +I + Sbjct: 309 DVKDVEYVINYDIP-----QNSEYYIHRIGRTARGGKTGTSITMT--NNRKQVTDLKMIL 361 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + K +DI +K ++ +N D Sbjct: 362 KETNS---------------KIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMI 406 Query: 630 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 L+ L Q A+ + ++ + ++ ++ I Sbjct: 407 SDLKD----LGYSENQIAKAALNLYFGETKENIVKIEDISI 443 >UniRef50_C8WL27 DEAD/DEAH box helicase domain protein n=3 Tax=Eggerthella lenta DSM 2243 RepID=C8WL27_EGGLE Length = 508 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 65/490 (13%), Positives = 130/490 (26%), Gaps = 65/490 (13%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 A L + L Y ++++ +E Sbjct: 11 EAALAAVERLGYEN-------------------------PTPVQLQAIPLVLEG-RDLIA 44 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + + + + L L ++T++ Sbjct: 45 AASTGTGKTAAFLLPILSTLP-----RGKRGKRAPRVLVVSPTRELAQQISQTCMQITRK 99 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + + G G + P L D + + + + + + Sbjct: 100 TGHYVTTV-FGGTPYGPQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADR 158 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + QT+ SAT + + G + Sbjct: 159 MLD-----------------MGFLPAVTTIVDATPADRQTLLFSATIDHSIQKNLGSLLN 201 Query: 410 DQVVRPTGLLDPIIEVRPVAT------QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 D V + + +LL + + + RV+V TK ED Sbjct: 202 DPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSD-RVIVFARTKNRTEDCA 260 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L + G R +HSD +R + + R G +LV ++L G+D+P+V V D Sbjct: 261 EALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFDL 320 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK---YN 579 + IGR R G A+ + + + I + + + Y Sbjct: 321 P-----DMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSDIEKLIGKNVPLMELETYE 375 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + +G G + A + + E + +A + + Sbjct: 376 LDMTVLEKGKKGAPKKGGYKGNKGSGRPAGAKRSDKRGGEKRDFERRSDSRAEGRSDNRP 435 Query: 640 EGLMMQHAQN 649 + Sbjct: 436 GRGKRAEGKR 445 >UniRef50_D2QY81 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY81_9PLAN Length = 458 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 101/375 (26%), Gaps = 42/375 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ L +E + + F I + + Sbjct: 32 YEYPTPIQAGLIPRALEGVDVVG-QARTGTGKTASFVIPIL-ELLDIERG-----APTPQ 84 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E +L+ E + G+P + Sbjct: 85 ALILVPTRELAVQVRDEVVKLS-------------------EGLKINCAAVYGGKPIKSQ 125 Query: 326 FDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D L +VV + G L E L + + Sbjct: 126 VDKLKKGCHVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCP 185 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLS 437 QT+ +SAT + + + + + ++ + D L+ Sbjct: 186 RERQTLLLSATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMK 245 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++ +V TKR + + + L + +H D+ +R ++ R G Sbjct: 246 LLLRE--EPKQAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSV 303 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 LV +++ G+D+ VS + D + +GR R G A + Sbjct: 304 RYLVATDVIGRGIDVSTVSHIVNFDIPVF-----CDDYVHRVGRTGRMGREGVAYTFVCP 358 Query: 557 ITPSMAKAIGETERR 571 I E + Sbjct: 359 DEGHELTRIEERINK 373 >UniRef50_B3M5L4 GF23818 n=1 Tax=Drosophila ananassae RepID=B3M5L4_DROAN Length = 795 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 61/404 (15%), Positives = 110/404 (27%), Gaps = 20/404 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI--KEELAARRKV 273 + ++ + + + T + + + + Sbjct: 272 FDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLMHLMDQK 331 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ L + L++ NE + Y+ + G L Sbjct: 332 ELQPGDGPIGLILAPTRELSLQIYNEAKKFGKV--YNLNVVCCYGGGSKWEQSKALEQGA 389 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + R L E + + QT+ Sbjct: 390 EIVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLF 449 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-----TQVDDLLSEIRQRAA 444 SAT + + D V G L+ I + + LL + + + Sbjct: 450 SATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLCHLVKFLS 509 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 VL+ K AE + L LH D+D +R ++I + E D+LV + Sbjct: 510 EGS-VLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDILVATD 568 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+P + V D R + IGR R G A A Sbjct: 569 VAARGLDIPHIRNVVNYDI-----ARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAG 623 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + ++Q + + G+ A T Sbjct: 624 HLVRNLEGADQQVPEDLMELAMKSSWFRSSRFKQGKGRKPANTY 667 >UniRef50_Q4FWG0 ATP-dependent RNA helicase, putative n=7 Tax=Trypanosomatidae RepID=Q4FWG0_LEIMA Length = 923 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 115/416 (27%), Gaps = 58/416 (13%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 A+ + Y + + G I + + S Sbjct: 480 ALAANIERCGYKKPTPVQRYG------------------IPVAL--------SGSDLMAC 513 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F I + + + + L L E ++LT T Sbjct: 514 AQTGSGKTAAFLIPVVQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNT 573 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 +++ Y + P L D + L + + + M Sbjct: 574 DIFYDVVYGGTR------YPQRFEQDILVACPGRLRDMFNEEYLSFSAIKFLILDEADRM 627 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV- 409 + + + QT SAT L + + Sbjct: 628 LEMGFEEQIEELVASRYTDMPTVDD-----------RQTFMFSATFPQRILNLAKRYLRR 676 Query: 410 DQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G + IE P ++D LL I + VL+ TK+MAED+ Sbjct: 677 KYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM-VLIFVETKKMAEDV 735 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L G +H D +R + D + +LV ++ GLD+P+V+ V D Sbjct: 736 NRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASRGLDIPDVAHVVQFD 795 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R G A + ++ +A + + ++ Sbjct: 796 LP-----QEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLALDLHKYFSEHGQEIP 846 >UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7_9CRUS Length = 843 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 54/391 (13%), Positives = 111/391 (28%), Gaps = 29/391 (7%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D ++ + V + + + + Sbjct: 418 DLVLQNIKASGYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPVVNILLEKQVQ 477 Query: 278 N------KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + E ++ + +++ E S N G L Sbjct: 478 GAPSGEVQKPEVVIISPTRELAIQIHREARKFS--HNSVLKSVIVYGGTQVSHQKSSLMN 535 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL----A 386 ++V + + L E L + + + Sbjct: 536 GCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQHPTMTPVGR 595 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEI 439 T+ SAT + + +G + D V TG + + + L+ + Sbjct: 596 RVTLMFSATFPDDVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRNKLVEIL 655 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R N RV+V +K+ A+ + +L + +H D +R + +R+ + G+ ++ Sbjct: 656 RDL--GNSRVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRNI 713 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV N+ GLD+ V V D + IGR R G++I + D Sbjct: 714 LVATNVAARGLDIAGVEYVINYDLP-----ADIEEYVHRIGRTGRVGNAGRSISFYDP-D 767 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGL 589 A +R + + G+ Sbjct: 768 RDAPNAGRLVQRLVASEADVPSFLQSSVSGV 798 >UniRef50_C4QME8 DEAD box ATP-dependent RNA helicase, putative n=7 Tax=Fungi/Metazoa group RepID=C4QME8_SCHMA Length = 1544 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 60/435 (13%), Positives = 116/435 (26%), Gaps = 35/435 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + F + H + Sbjct: 870 FDKPTPIQCQALP-VIMSGRDMIGIAKTGSGKTLAFLVPLMRHLEHQAPLNPG---DGPI 925 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++L Q + G + P + Sbjct: 926 ALLLAPTRELALQIFKETKKLCQAAD-ARAVCVYGGTGISEQIAELKRGAEIIVCTPGRM 984 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L A+G R L E + + ++ E Sbjct: 985 IDMLAANG-------GRV-------TNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRP 1030 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + G ++ + +V +L Sbjct: 1031 DRQTLMFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLEL 1090 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + VLV + A++L L ++G LH ID +R +I D + G Sbjct: 1091 LGIYQEEGS-VLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIR 1149 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +L+ ++ GLD+ ++ LV D + GR R G A + Sbjct: 1150 LLIATSVAARGLDVTDLLLVINYDCPNH-----YEDYVHRCGRTGRAGRKGFAYTFLTPD 1204 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 A + ++ + K EE ++ + + KG Sbjct: 1205 QERSAGDVVRAFKQSGQ--KPPEELMNMWNAYKIRMEHEGKKVYGSSGFRGKGFMFDEVE 1262 Query: 618 VEPDNVPMDMSPKAL 632 + ++ + AL Sbjct: 1263 AQLNSEKRRLQKAAL 1277 >UniRef50_P25888 ATP-dependent RNA helicase rhlE n=363 Tax=root RepID=RHLE_ECOLI Length = 454 Score = 266 bits (679), Expect = 3e-69, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 100/383 (26%), Gaps = 32/383 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + +E FT+ H +T + Sbjct: 21 YREPTPIQQQAIPAVLEG-RDLMASAQTGTGKTAGFTLPLLQHLIT--RQPHAKGRRPVR 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E R + ++ G + P L Sbjct: 78 ALILTPTRELAAQIG-ENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL 136 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + L + + Sbjct: 137 LDLEHQNAVKLDQVEILVLDEADR-----------------MLDMGFIHDIRRVLTKLPA 179 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQR 442 Q + SAT + + + + + + + + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 443 AAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++VLV T TK A L E L + G R +H + R + D + G+ VL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+ E+ V + + IGR R G+A+ Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNV-----PEDYVHRIGRTGRAAATGEALSLVCVDEH 354 Query: 560 SMAKAIGETERRREKQQKYNEEH 582 + + I + ++ + Sbjct: 355 KLLRDIEKLLKKEIPRIAIPGYE 377 >UniRef50_Q54IV3 Probable ATP-dependent RNA helicase ddx42 n=3 Tax=Eukaryota RepID=DDX42_DICDI Length = 986 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 108/378 (28%), Gaps = 18/378 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKV 273 D ++ ++ T + + + + Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQP 371 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 LE L + ++ E S + + G L A Sbjct: 372 YLEKGDGPIALFLAPTRELAHQIYLETLKYSKY--FKLKTTVLYGGVSKQQQCKELKAGC 429 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I I + +R L E + L QT+ Sbjct: 430 EIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLF 489 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT E + + D + G + I++V + + L+ Sbjct: 490 SATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLS 549 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 VL+ TK E L+ L + G + LH D + +ER + I+ + G+ ++L+ ++ Sbjct: 550 QGSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDV 609 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+P + V D R S IGR R N G A + Sbjct: 610 AARGLDIPLIKNVVNYDT-----SRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVD 664 Query: 565 IGETERRREKQQKYNEEH 582 + + + Sbjct: 665 LIKNLESASQFVPPELID 682 >UniRef50_B4WCQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCQ8_9CAUL Length = 510 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 35/386 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + V + + F + E + Sbjct: 36 YTKPTPIQEKAIPD-VMQGKDLLGIAQTGTGKTAAFALPILHRL---AENRIAPKPRTTR 91 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + G G + + P L Sbjct: 92 VLVLSPTRELATQIGDSFKAYGAHLG-FRVAVIFGGVKYGAQERALQQGLDILVAAPGRL 150 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ L + + + + M + Sbjct: 151 LDHIQQKNLDLSSTEILVLDEADQMLDL-----------------GFIKPIRQIVSRIPA 193 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEI 439 Q ++ SAT + +G + D V ++ V + LL+E+ Sbjct: 194 KRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEM 253 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R LV T TK A+ + YLE G +H + +R + + G+ V Sbjct: 254 FSD-PEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRV 312 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ VS V + + + IGR AR +G AI + Sbjct: 313 LVATDIAARGIDVDGVSHVVNFELPHV-----PEAYVHRIGRTARAGADGTAISFVAGDE 367 Query: 559 PSMAKAIGETERRREKQQKYNEEHGI 584 + K I + R++ + + Sbjct: 368 MKLLKDIEKVTRQKIPAIDRRNDKAL 393 >UniRef50_D2L498 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L498_9DELT Length = 492 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 61/394 (15%), Positives = 115/394 (29%), Gaps = 37/394 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ E E L F + +T ++ + Sbjct: 21 YENPTPIQAEAIPHVTEG-RDLMGLAQTGTGKTAAFLLPIIHRLMT-----TKSEKRGVR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L L + T+ + G + + P L Sbjct: 75 ALILAPTRELAEQIYRAGLDLGRGTR-LRAAVIYGGVGMFPQTRALRQGVDIIVACPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + + + M+ + Sbjct: 134 LDHMNQGNVRFDALETLVLDEADHMFD-----------------MGFLPDIKRILSALPS 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP--IIEVRPV---ATQVDDLLSEIR 440 QT+ SAT + + D V G + P +E TQ LL + Sbjct: 177 ERQTLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLL 236 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + A + V+V T TK A++L L G + L ++ +R + R G F VL Sbjct: 237 EEAGK-QSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ +V V D + + IGR R + G+A + Sbjct: 296 VATDIAARGIDVSQVGHVVNFDIP-----DTAEAYTHRIGRTGRAEHEGQAHTFVTGEDM 350 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 M +AI ++ +++ P + Sbjct: 351 GMVRAIESHMKKPLPRREVEGFEP-DPSEFRRSY 383 >UniRef50_Q725W5 ATP-dependent RNA helicase, DEAD/DEAH family n=3 Tax=Desulfovibrio vulgaris RepID=Q725W5_DESVH Length = 532 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 51/382 (13%), Positives = 109/382 (28%), Gaps = 16/382 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L +E ++ + + +I + + + Sbjct: 10 LPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGK----TAAFGLPLLQ 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ + + T+ + + G+P L Sbjct: 66 RIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGA 125 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + R L E L + Q+ + Sbjct: 126 QVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQSAFF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAA--INE 447 SAT + LE + + + + + E + + + + I Sbjct: 186 SATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFDAYIPR 245 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + +V TK+ ++L L++ G LH D++ +R ++ R G VLV ++ Sbjct: 246 KAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVATDVAA 305 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ +V V D + + IGR R G+A + + I Sbjct: 306 RGLDVDDVDTVINFDLPN-----DPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ 360 Query: 567 ETERRREKQQKYNEEHGITPQG 588 R ++ + Sbjct: 361 RVTGSRIDRRAMPTAADASRAR 382 >UniRef50_C7RHZ9 DEAD/DEAH box helicase domain protein n=3 Tax=Anaerococcus RepID=C7RHZ9_ANAPD Length = 536 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 59/411 (14%), Positives = 119/411 (28%), Gaps = 21/411 (5%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +E + + + + + + A +E Sbjct: 10 NEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGK----TAAFAIPIIENIEA 65 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 N + + L + +++ E+ + + LS G L +VV Sbjct: 66 NGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSV-YGGSHIVRQIKSLKKGVEIVV 124 Query: 338 DESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + D+ + L E + + QT + SAT Sbjct: 125 GTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNPNRQTCFFSATM 184 Query: 397 GNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 G E S + +D + + + L+ + Sbjct: 185 GPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRLL--EIHKANLA 242 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V TKR + L E L + V LH D+ R ++++ R +LV ++ G Sbjct: 243 IVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQILVATDIAARG 302 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+ +V +V D + + IGR AR G + + + I Sbjct: 303 LDVDDVDIVFNYDLPQLD-----EYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQIENY 357 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + KQ + Q + + DI + + R + + Sbjct: 358 TKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEK 408 >UniRef50_Q3SF48 DEAD/DEAH box helicase n=7 Tax=cellular organisms RepID=Q3SF48_THIDA Length = 533 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 62/461 (13%), Positives = 117/461 (25%), Gaps = 16/461 (3%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ + V + R Sbjct: 6 LGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQRLLA 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ + + G E + G P L Sbjct: 66 EPAVKSIGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLSQPV 125 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + R L E L + QT+ Sbjct: 126 DVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQTLLF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + D ++ + + LL + + + Sbjct: 186 SATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLRDVEM 245 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +V TKR E++++ L E G LH D+ +R ++ LR G VLV ++ Sbjct: 246 -VQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDV 304 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ +S V D R + IGR R G A+ + + K Sbjct: 305 AARGIDVASISHVINFDLP-----RQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVKN 359 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I R + + + G K R Sbjct: 360 IERYTGNRIEVHTLPGLEPTQRPSTGRP-GNGRPRGNGPRGGYEKRSFGDRSEPRSYGDR 418 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + + + A F+ + + ++ Sbjct: 419 PRGDSRDNRDRGYRGDARRNDGAPARRFDNGVRGPSDVPRM 459 >UniRef50_C7PD17 DEAD/DEAH box helicase domain protein n=139 Tax=root RepID=C7PD17_CHIPD Length = 492 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 44/385 (11%), Positives = 106/385 (27%), Gaps = 31/385 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + ++ F I ++ + + Sbjct: 47 YTAPTPIQQQAIPHVLDT-RDLLGCAQTGTGKTAAFAIPLLQLMHQDQQAQQRKGLRNIK 105 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + ++ G + + P L Sbjct: 106 ALILTPTRELAIQIQ-ESFTAYGKFLDLKSLVIFGGVSQHPQTEALKKGVDILIATPGRL 164 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + D + + + L + + Sbjct: 165 LDLISQNYITLRDIKYFVLDEADR-----------------MLDMGFVHDVQRVIVKLPE 207 Query: 386 APQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ 441 Q+++ SAT + + + + I +D + + Sbjct: 208 QRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLH 267 Query: 442 RAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +LV T TK A+ + + L + +H + R + + + + V Sbjct: 268 ILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTRV 327 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ E++ V + + + IGR R +G AI + + Sbjct: 328 LVATDIAARGIDIDELTHVVNYELPNV-----PETYVHRIGRTGRAGADGIAISFCEPEE 382 Query: 559 PSMAKAIGETERRREKQQKYNEEHG 583 + K I + R + + H Sbjct: 383 KAFLKDILKLISREIPVETEHPFHN 407 >UniRef50_Q5NZY2 ATP-dependent RNA helicase DeaD n=12 Tax=Bacteria RepID=Q5NZY2_AZOSE Length = 658 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 59/386 (15%), Positives = 113/386 (29%), Gaps = 19/386 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 +++L ++ LS T + I + + + A Sbjct: 48 QLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGK----TAAFALPLL 103 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L+ + + T+ + E + G+ L Sbjct: 104 DRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARG 163 Query: 333 GLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + I D L E L + + QT Sbjct: 164 AHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTAL 223 Query: 392 VSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + + VA ++D L + I + Sbjct: 224 FSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDAL-TRILEVEE 282 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++ TK +L + LE G L+ D+ R +I L+ G+ D++V + Sbjct: 283 DFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATD 342 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ +S V D + + IGR R G AIL+ M K Sbjct: 343 VAARGLDVSRISHVINYDIP-----YDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLK 397 Query: 564 AIGETERRREKQQKYNEEHGITPQGL 589 I R+ + + + + + Sbjct: 398 VIERATRQPIEALQLPSREAVADKRV 423 >UniRef50_C7HXF4 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=C7HXF4_THIIN Length = 666 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 131/453 (28%), Gaps = 28/453 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ L T + + + + A ++ N Sbjct: 18 LLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGK----TAAFALPILAKIDCNA 73 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + T+ + E + G+ L +VV Sbjct: 74 RHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRGAHVVVGT 133 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + + D+ L E L + + Q SAT + Sbjct: 134 PGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALFSATMPS 193 Query: 399 YELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + D + ++D L + E +++ Sbjct: 194 AIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRIL--EVEPFEGMII 251 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK+ E+L E L G L+ D+ R +++ L+ G+ D+LV ++ GLD Sbjct: 252 FARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAARGLD 311 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + +S V D S + IGR R G AIL+ + +AI R Sbjct: 312 VERISHVVNYDIPT-----DTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATR 366 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + Q + + +++ + I + +G + +VE D+ Sbjct: 367 QPITQMQLPSTEAVNDSRISRFMERITEA------REQEGLEDYQRLVERYEQEFDIPAI 420 Query: 631 ALQQKIHEL--EGLMMQHAQNLEFEEAAQIRDQ 661 + + + + E A R++ Sbjct: 421 EIAAALARMVQGNKPLLMRPGSEPSYNADTREE 453 >UniRef50_Q0AVQ9 ATP-dependent RNA helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVQ9_SYNWW Length = 530 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 54/388 (13%), Positives = 104/388 (26%), Gaps = 41/388 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++V+ F I + + L Sbjct: 26 KPTPIQVKSIP-IAMAGLDLMGQAQTGTGKTASFGIPILNRVIKGE---------GLQAL 75 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L E+ + + ++++ G ++ S + P L Sbjct: 76 VLCPTRELAVQV--TEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNPEIIVGTPGRLM 133 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D++ + + +V + + M K Sbjct: 134 DHMNRGTISLSPLKYVVLDEADEML-----------------DMGFLPDIQKILSQCPRE 176 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRA 443 QT SAT + E + + + + E + + + Sbjct: 177 RQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRII 236 Query: 444 AINERVL--VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + + + TKR A++L L G LH D+ ER ++ R G +LV Sbjct: 237 DAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 +L GLD+ V+ V D S I +GR R G AI + Sbjct: 297 ATDLAARGLDIELVTHVFNFDIP-----EDLDSYIHRVGRTGRAGRSGIAITLVEPTQIR 351 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQG 588 + + I +R ++ + Sbjct: 352 LLRMIERHTGKRIERALLPTLAEAVEKR 379 >UniRef50_Q0ST49 ATP-dependent RNA helicase, DEAD/DEAH box family n=23 Tax=cellular organisms RepID=Q0ST49_CLOPS Length = 528 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 52/383 (13%), Positives = 108/383 (28%), Gaps = 16/383 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + ++ + + + + + Sbjct: 9 LGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN-AD 67 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K + L + +++ EL E + G+P L Sbjct: 68 FSGKKKSPKALILAPTRELAIQVNEELVRLGKHEK--LSVLPIYGGQPIDRQIRALKNGV 125 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + L E L + + + QT+ Sbjct: 126 DIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLF 185 Query: 393 SATPGNYELEKSGGDVV-DQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAA--IN 446 SAT + + + D + E + D + + Sbjct: 186 SATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEP 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TK+ +++ E ++ G V +H D+ R++ +R + G D LV ++ Sbjct: 246 NAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVA 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ V+ V D + S + IGR R G A M K I Sbjct: 306 ARGIDVESVTHVINYDLP-----QDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQI 360 Query: 566 GETERRREKQQKYNEEHGITPQG 588 + + + ++ I Sbjct: 361 QKHTKSKIIRKAVPTVDEIFQNK 383 >UniRef50_C0AEG7 DEAD/DEAH box helicase domain protein (Fragment) n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEG7_9BACT Length = 606 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 50/405 (12%), Positives = 106/405 (26%), Gaps = 16/405 (3%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ + + + + V R Sbjct: 3 LGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVDT 62 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + + T+ + E G+ F L A Sbjct: 63 KLKAVQ----VLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGA 118 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + + + D+ L E L + + Q+++ Sbjct: 119 QVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFF 178 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRA--AINE 447 SAT + + + ++ L + + Sbjct: 179 SATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFR 238 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ TK M ++L E L G LH DI +R + + F+ L+ ++ Sbjct: 239 YGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAA 298 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ ++ +V D IGR R GKA + +++ Sbjct: 299 RGLDVDDLEVVFNFDLPN-----DAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMV 353 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 R ++++ + N + A Sbjct: 354 RFARLDIRRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRF 398 >UniRef50_Q9NQI0 Probable ATP-dependent RNA helicase DDX4 n=53 Tax=Coelomata RepID=DDX4_HUMAN Length = 724 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 58/417 (13%), Positives = 119/417 (28%), Gaps = 48/417 (11%) Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + + + + P + I + + Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPI--------ILAGRDLMACAQTGSGKTAA 341 Query: 241 FTIYPKTHYVT-PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 F + H + + E + L N LE ++ + T ++ Sbjct: 342 FLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGT-CVRAVVIY 400 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G P L D + + + + ++ + + Sbjct: 401 GGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADR---------- 450 Query: 360 TLVEYGFRLPSALDNRPLKFEEF----EALAPQTIYVSATPGNYELEKSGGDVV-DQVVR 414 L K QT+ SAT + + + + Sbjct: 451 -------MLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFV 503 Query: 415 PTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G + + ++ + L+ +R +ER +V TK+ A+ + +L Sbjct: 504 AVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI--GDERTMVFVETKKKADFIATFLC 561 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + +H D + ER + + D R G+ VLV ++ GLD+ V V D Sbjct: 562 QEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLP--- 618 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQKYNEEH 582 + + IGR R G+AI + D +A+ + + ++ E Sbjct: 619 --STIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEE 673 >UniRef50_O26305 ATP-dependent RNA helicase, eIF-4A family n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O26305_METTH Length = 425 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 117/389 (30%), Gaps = 14/389 (3%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD + D + + + I T+ Q A LE Sbjct: 9 FDISGDINRALDDMGFESTTPIQALTLPVTLD-GMDVVGEAQTGTGKTAAFAIPVLENLE 67 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ + + + L++ E+ + G+ L ++ Sbjct: 68 AERVPQALIICPTRELCLQVSEEIKRIGKYMK--VKVLAVYGGQSIGNQIAQLRRGVHVI 125 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V I I L E L + + QT+ SAT Sbjct: 126 VATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSAT 185 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVT 452 L + + + V P I+ T+ +D + + + N L+ Sbjct: 186 VSKPILRIARKYMRNPQVMRVEKKHSPKIDEFYFKTREEDKVELLDWILSSNNIRMGLIF 245 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR + L L G +H D+ +R ++ R G+F +LV ++ G+ + Sbjct: 246 CNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARGIHV 305 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 P+V V D E + IGR R +GK+ + I + Sbjct: 306 PDVEAVVNYDLPFEN-----EYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGK 360 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALG 600 R KQ I +G + +IL Sbjct: 361 RIKQSNMPSPEEI-RRGYEMDLREILRRN 388 >UniRef50_Q9C551 DEAD-box ATP-dependent RNA helicase 5 n=5 Tax=rosids RepID=RH5_ARATH Length = 537 Score = 265 bits (677), Expect = 4e-69, Method: Composition-based stats. Identities = 62/411 (15%), Positives = 124/411 (30%), Gaps = 38/411 (9%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 V+D ++ + ++ + F I H + ++I Sbjct: 126 NVLDCCKTFEKPSPIQSHTWPFLLDG-RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIG 184 Query: 258 QAMEEI-KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 +++ L L + + + G G + + Sbjct: 185 GGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCG-LKSICVYGGSSKGPQISAIRSGVD 243 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P L D + ++ L + D S V + + L + Sbjct: 244 IVIGTPGRLRDLIESNVLRLSDVSFVVLDEADR-----------------MLDMGFEEPV 286 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLD--------PIIEVRP 427 Q + SAT + + + + + G +D IIEV Sbjct: 287 RFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLD 346 Query: 428 VATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L++ + + + RVLV L K AE L +L++ G + +H + ER Sbjct: 347 ERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERT 406 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G +LV ++ GLD+P+V +V + + IGR R Sbjct: 407 RSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPL-----TTEDYVHRIGRTGRAG 461 Query: 547 -NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 G A + + +A + R + + + KK + Sbjct: 462 KKGVAHTFFTPLNKGLAGELVNVLREAGQV--VPADLLKFGTHVKKKESKL 510 >UniRef50_C7MN05 DNA/RNA helicase, superfamily II n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MN05_CRYCD Length = 551 Score = 265 bits (677), Expect = 5e-69, Method: Composition-based stats. Identities = 59/438 (13%), Positives = 112/438 (25%), Gaps = 40/438 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +D ++ + V F++ R Sbjct: 23 YTDPTPVQEQAIP-AVLAGRDVIAAAKTGTGKTAAFSLPTMDRLGHARHGQG------PL 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + G + S P L Sbjct: 76 LLIVTPTRELALQIESVCRTIAK-RSGHRVTCVVGGVSYNPQIDSLRRGTDVLIATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + D + + + + M L + Sbjct: 135 IDLMNQDAAHLNQVETLVLDEADRM-----------------LDMGFLPDMRRIVAACPT 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + V ++ + D L++ Sbjct: 178 QRQTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIAL 237 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R++V T+ + L + G V +HSD +R I L G+ D Sbjct: 238 LNE--RGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCD 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++L G+D+P V+ V LD + IGR R G AI + Sbjct: 296 ILVATDVLARGIDIPNVNYVVNLDMP-----DQVEDYVHRIGRTGRAGEAGCAISFVTPE 350 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 ++ + I + + + + A KSR Sbjct: 351 NKAILRDIQKLIGKDIPEMSVESFDSSASDNALAAKATRANAQNDPELATAAREDKSRKK 410 Query: 618 VEPDNVPMDMSPKALQQK 635 + Q+ Sbjct: 411 AKSSRSSRREHNTEDQRA 428 >UniRef50_B6YWR7 DEAD/DEAH box RNA helicase n=3 Tax=Thermococcus RepID=B6YWR7_THEON Length = 403 Score = 265 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 50/375 (13%), Positives = 109/375 (29%), Gaps = 16/375 (4%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + + + + + E K ++ L + L Sbjct: 28 QKEVIPRLLSGDADIIGQSQTGTGKTAAFALPIIEAID---EKEKSVQAIILAPTRELAL 84 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 ++ +E+ G ++ G+P L +VV + I Sbjct: 85 QVADEIKSLRGR--KRVYVYAVYGGQPIGPQIRALERGTHVVVGTPGRVLDHIRRGTLDL 142 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + L E L + + + SAT L + + D V Sbjct: 143 SKVKFFILDEADRMLDMGFIDDIEAIFRETPKKKRVLMFSATMPREILRLARRYMNDYEV 202 Query: 414 RPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + +E + S +++ + + +V TKR +L+E L + G Sbjct: 203 IKVSSDELVPGMVEQEYIEVVPARKFSTLKKILSDDFYGIVFCATKRETRELSEKLRKQG 262 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 L+ D+ R + +LV ++ GLD+ ++S + Sbjct: 263 YSAEALNGDMSQAARERTFWRFKTKRTRILVATDVAARGLDVQDISHIVNYSLPM----- 317 Query: 531 SERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT-PQG 588 + + IGR R GKA+ + + I ++ + +EE + Sbjct: 318 TAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYIASVAGVDIQKSELSEELPREYHER 377 Query: 589 LNKKVVDILALGQNI 603 ++ Sbjct: 378 YKREERPQRYRKNGR 392 >UniRef50_A7IK90 DEAD/DEAH box helicase domain protein n=36 Tax=Alphaproteobacteria RepID=A7IK90_XANP2 Length = 559 Score = 265 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 57/444 (12%), Positives = 122/444 (27%), Gaps = 33/444 (7%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ E ++ + F + V R L Sbjct: 60 PTPIQAEAIP-QILAGRDLIGIAQTGTGKTAAFALPILDRLVRHPHRPEPKSV---RALV 115 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + ++ + + G G + + P L D Sbjct: 116 LSPTRELSGQIVENFEKFGRHA-NISVSLAIGGVPMGRQIRALSRGVDVLVATPGRLIDL 174 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + + + + M L + Sbjct: 175 VENHAVKLDQVEVLVLDEADQM-----------------LDMGFVHAIRAIVRRLPHKRH 217 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA-- 443 +++ SAT + E +G + D V + +E R + + + + Sbjct: 218 SLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVLST 277 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +R LV + TK A+ + L + G +H + +R ++ R G+ L+ Sbjct: 278 EDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIAT 337 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ G+D+ VS V D S + IGR AR G AI + D + Sbjct: 338 DIAARGIDVTGVSHVINFDLPNV-----PESYVHRIGRTARAGREGIAISFCDHEERAFL 392 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 ++I + + + + ++ + G+ P + Sbjct: 393 RSIEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERDETSERSDYIGRSGRQNPRGQRPR 452 Query: 623 VPMDMSPKALQQKIHELEGLMMQH 646 + S + + EG Sbjct: 453 HGDERSGEGRSRAPRSEEGRPQAA 476 >UniRef50_C5C5R9 DEAD/DEAH box helicase domain protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C5R9_BEUC1 Length = 589 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 55/370 (14%), Positives = 99/370 (26%), Gaps = 20/370 (5%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ ++ T + T + V + L A L + Sbjct: 31 LLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLAAVDPQLAAVQ 90 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T+ +++ + G L +VV Sbjct: 91 A----LVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERGAQVVVGT 146 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + D R L E L Q SAT Sbjct: 147 PGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVALFSATMPP 206 Query: 399 YELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + + + + P + + L + + + +V Sbjct: 207 PIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLAT--SDADAAIV 264 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T+ AE++ L G + D+ ER I+ LR G DVLV ++ GLD Sbjct: 265 FVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVAARGLD 324 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + + LV D R + + IGR R G A+ + + I Sbjct: 325 VERIGLVVNFDVP-----REVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTIERVTG 379 Query: 571 RREKQQKYNE 580 R + Sbjct: 380 SRLVEATIPT 389 >UniRef50_C5LZN9 RNA helicase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LZN9_9ALVE Length = 580 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 67/474 (14%), Positives = 121/474 (25%), Gaps = 69/474 (14%) Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQR--GTFR--VRGEVIDIFPAESDDIALRV 214 L G+ D + + + Y + R G R I + A V Sbjct: 123 LSWDAGIDWDYEKLAQFNKDF-YVPHPTVEGRSEGEVDDIRRANRIQLIEAHGMKCPKPV 181 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK-------THYVTPRERIVQAMEEIKEEL 267 F+E L L + P V E Sbjct: 182 TTFEESNFPDYLISTLNQRFPGGHPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYLMPA 241 Query: 268 AARR--KVLLENNKLLEEQRLTQRTQF----------------DLEMMNELGYCSGIENY 309 + +E L + G + Sbjct: 242 IVHIAAQPEVEQGDGPVALVLVPTRELSQQLLAESMLQIGSVPLRIACVYGGQPKRQQER 301 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + P L D+L + +++ I + M Sbjct: 302 ELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEMLAL---------------- 345 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLL-----DPII 423 + QT+ SAT + + + V G + Sbjct: 346 -GFGRQLDSICSAIRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAACHQVT 404 Query: 424 EVRPVATQ--------VDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERV 473 + +D+++ ++ N + L+ TKR + LT+ L G Sbjct: 405 QDFVFLEHPGMKQKEFMDNVIPKVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNA 464 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +HSD + ER + R G+ +LV NL+ G+D+ + V D ++ Sbjct: 465 VCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMP-----QNVE 519 Query: 534 SLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + IGR AR +G +I AK + + + Sbjct: 520 EYVHRIGRTARAGAHGTSITLFTAQEGRHAKDLVDILNEAGQNIPEFLLMLKDN 573 >UniRef50_B0U160 DEAD-box subfamily ATP-dependent helicase n=18 Tax=Francisella RepID=B0U160_FRAP2 Length = 581 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 59/468 (12%), Positives = 131/468 (27%), Gaps = 24/468 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L + ++ + + I + + L Sbjct: 11 QLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMD 70 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 LE+ + + T+ + E + ++ G+ + L Sbjct: 71 --LESRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQG 128 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + + I + D R L E L + + Q + Sbjct: 129 VKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRLL 188 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQ--RAAIN 446 SAT + + + + + + + + + + Sbjct: 189 FSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEET 248 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + V++ TK ++ + L+ G RV ++ D+ +R I+ R + DVLV +++ Sbjct: 249 DGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVV 308 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ +S V D + + IGR R G +I + + Sbjct: 309 ARGIDLERISHVINYDMPN-----DSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRTL 363 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++ + ++ I + K K + I+ + Sbjct: 364 ERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASA-----LDKNKSLDNYKEIITSIRDEL 418 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 ++ L + L F Q RD Q S Sbjct: 419 ELDSDELLAVLTLLAQGKKSF-----FPREIQARDDRPQRDRNLRGNS 461 >UniRef50_Q0HYG8 DEAD/DEAH box helicase domain protein n=78 Tax=Bacteria RepID=Q0HYG8_SHESR Length = 549 Score = 264 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 55/383 (14%), Positives = 103/383 (26%), Gaps = 38/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + V FT+ + + +A Sbjct: 21 YDTPSPIQAQAIP-AVLTGKDVMAAAQTGTGKTAGFTLP----LLELLSKGNKAKAGQIR 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E + + G + P L Sbjct: 76 ALVLTPTRELAAQ-VSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + M K Sbjct: 135 LDLVQQNVVKFNQLEILVLDEADRML-----------------DMGFIRDIKKILALLPA 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 Q + SAT + E + G V V + I + L+ Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQL 237 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I+Q ++VLV + TK A L + L + +H + R + + D + GE Sbjct: 238 IKQE--DWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVR 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ GLD+ ++ V D + IGR R +G+A+ Sbjct: 296 VLVATDIAARGLDIDQLPQVVNFDLPNV-----PEDYVHRIGRTGRAGASGQAVSLVSSE 350 Query: 558 TPSMAKAIGETERRREKQQKYNE 580 + + I R ++Q+ Sbjct: 351 EFKLLRDIERLINRVLERQEIEG 373 >UniRef50_A8IAJ3 Helicase n=4 Tax=Alphaproteobacteria RepID=A8IAJ3_AZOC5 Length = 582 Score = 264 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 71/506 (14%), Positives = 141/506 (27%), Gaps = 25/506 (4%) Query: 182 ARNDQAFQR---GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 R + R GTF RG P + + L ++ + ++ T + Sbjct: 38 DRRPLVWARTRHGTFDQRGAATSSDPMSFSE----LGLSEKVLSAVAATGYTTPTPIQAQ 93 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + + + + + ++ L + ++ Sbjct: 94 AIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLLEQGRARARMPRTLILEPTRELAAQVEE 153 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRAR 357 + L G L +++ + + Sbjct: 154 NFVRYGKNHKLNVALL--IGGVSFGDQDTKLLRGVDVLIATPGRLLDHVERGRLLLSGIE 211 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + E L + + QT++ SAT + + V Sbjct: 212 VLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEIQRLVSQFLSNPVRVEVS 271 Query: 418 LL---DPIIEVR-----PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + I + + L E+ + A + +V KR + L++H Sbjct: 272 KPASANTSITQLLVASGREDYEKRETLRELIRNADQLQNGIVFCNRKRDVAVVHRSLQKH 331 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G V LH D+D R + + R GE +LV ++ GLD+P VS V D Sbjct: 332 GFNVVCLHGDMDQHARTQALDQFRTGEATLLVASDVAARGLDIPAVSHVFNYDVPHH--- 388 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + IGR R G AI+ AI + Q + Sbjct: 389 --SEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAIEKLIGNAIPWQGEPLGEAPPREK 446 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 ++ G+ + K GRG+S E ++ + +A + + + Sbjct: 447 RSRGGDRREERGERSERNKRSGRGRSERKAEVEDGVEVRAERAPRPAREGRPEREPRPER 506 Query: 649 NLEFEEAAQI-RDQLHQLRELFIAAS 673 E + R+ + + Sbjct: 507 EPRAERQPRPEREARPEREARPEREA 532 >UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 Tax=Amniota RepID=D2I3Z4_AILME Length = 645 Score = 264 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 58/402 (14%), Positives = 127/402 (31%), Gaps = 37/402 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + L + + H I + L Sbjct: 263 KPTPIQSQAWPIILQGIDLIGV-AQTGTGKTLSYLMPGFIHLNNQP--ISREERNGPGML 319 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + + + + G + P L Sbjct: 320 VLTPTRELALQVEAECSKYS--YKGLKSICIFGGRNREQQIRDITKGIDIIIATPGRLNY 377 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + + +++ + + M +++ +K Sbjct: 378 LQMNNFVNLQSITYLVLDEADKML-----------------DLGFEHQIMKILLDVRPDR 420 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ +SAT + + + + ++ G LD + + + LL E Sbjct: 421 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRS-LLQEF 479 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q + ++V+V + +A+DL+ L G V+ LH D D +R + D R G+ V Sbjct: 480 LQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKV 539 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +L GLD+ +++ V D R+ + +GR R G +I + Sbjct: 540 LIATDLASRGLDVNDITHVYNYDFP-----RNIEEYVHRVGRTGRAGKTGLSITLMTQND 594 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +A + + +R + + L+K+ D Sbjct: 595 WKIATELIKILKRANQSVPEDLLTMAEQYKLHKQKKDTGKRK 636 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 264 bits (674), Expect = 9e-69, Method: Composition-based stats. Identities = 59/388 (15%), Positives = 119/388 (30%), Gaps = 26/388 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L D ++ L + V + I + Q Sbjct: 6 LDLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIA----CAQTGTGKTAAYVLPVIN 61 Query: 274 LLENNKLLE---EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP---PPTLFD 327 L + T+ + +++ S G Sbjct: 62 ELSKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKR 121 Query: 328 YLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +V+ + I G + L E L + ++ + Sbjct: 122 GLEMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPY 181 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPT------GLLDPIIEVRPVATQVDDLLSEIR 440 QTI SAT + + D + + ++ L Sbjct: 182 CQTIMFSATMPPKIRTLAKTILKDPEEVKIAISRPPESIMQTAYICYDPQKLKILQDLFT 241 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q + +RV++ + +K ++L L+ V +HSD++ +R E++++ + G D+L Sbjct: 242 Q--SRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDIL 299 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKIT 558 V +++ G+D+ ++ LV D + IGR AR G AI + Sbjct: 300 VATDVVARGIDINDIKLVVNFDIPH-----DPEDYVHRIGRTARGTNGEGLAITFVSIDE 354 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITP 586 + K I + + + + E G P Sbjct: 355 QAQFKRIEDFLEKEVYKIPVSPEFGEVP 382 >UniRef50_Q9P7C7 Pre-mRNA-processing ATP-dependent RNA helicase prp11 n=1 Tax=Schizosaccharomyces pombe RepID=PRP11_SCHPO Length = 1014 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 65/480 (13%), Positives = 135/480 (28%), Gaps = 29/480 (6%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AAR 270 + L + + ++ + I + + + + Sbjct: 422 QCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIK 481 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + L+ + +T + +++ E + G P L Sbjct: 482 DQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLK--LLNIRACCAYGGAPIKDQIADLK 539 Query: 331 ADGLLVVDESHVTIP----QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +VV I G + R L E + + ++ Sbjct: 540 RGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPD 599 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V G ++ I+EVRP ++ LL + Sbjct: 600 RQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELL 659 Query: 440 RQRAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + R LV + A+ L L + G +H D +R I D + G F Sbjct: 660 GELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVF 719 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 DVL+ +++ GLD+ + LV D + +GR R + G A+ + Sbjct: 720 DVLIATSVVARGLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFITP 774 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 A I + + ++ +E +KV Sbjct: 775 EQEKYAVDIAKALKMSKQ--PVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDET 832 Query: 617 IVEPDNVPMDMSPKALQ--QKIHELEGLMMQHAQNLE--FEEAAQIRDQLHQLRELFIAA 672 + + + + E + + + ++R + + A Sbjct: 833 RNAERKMQRKAYGEDEEDVETEAEAKSPLEKITPEKSTGDPTLDRVRAAVGGIAARAFAN 892 >UniRef50_C1D891 Putative ATP-dependent RNA helicase protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D891_LARHH Length = 520 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 99/383 (25%), Gaps = 36/383 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ E + F + + + Sbjct: 25 TTPTPVQAEALP-LLLSGRDLMASAQTGTGKTAAFLLPALSRLLVEPVARS----RGPRI 79 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L Q + + G +N P L Sbjct: 80 LVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLTRPIEVMVATPGRLM 139 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + + + + + L ++ A Sbjct: 140 DQMRSGRIDFSRLEMLVLDEADR-----------------MLDMGFSEDVMEIASQLPKA 182 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEI 439 QT + +AT L+ + + + ++ L+ I Sbjct: 183 RQTAFFTATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHI 242 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ +V TKR + L + L G R LH D+ +R + LR G+ +V Sbjct: 243 LS-QPDVKQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEV 301 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ +S V D + + +GR R G A+ + Sbjct: 302 LVATDVAARGIDVAGISHVINFDLPRF-----AEDYVHRVGRTGRAGATGTAVSLVGRQD 356 Query: 559 PSMAKAIGETERRREKQQKYNEE 581 K I ++ + Sbjct: 357 AFPLKKIERFTGQKLIVTEIEGM 379 >UniRef50_P93008 DEAD-box ATP-dependent RNA helicase 21 n=12 Tax=Viridiplantae RepID=RH21_ARATH Length = 733 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 47/393 (11%), Positives = 107/393 (27%), Gaps = 18/393 (4%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++ +++ + F + + + E Sbjct: 333 YKKPSPIQMAAIPLGLQQ-RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPY 391 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L E + G + P L Sbjct: 392 AVVMAPTRELAQQIEEETVK-FAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRL 450 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L ++ ++V + + M + V + + + + + Sbjct: 451 IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKI 510 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 T SAT + + + VV G + + + + + L Sbjct: 511 YRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKL 570 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + + +V TK+ + + + L++ G RV LH +R + R ++ Sbjct: 571 LDELGE--KTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYN 628 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV +++ G+D+P+V+ V D + IGR R G A + Sbjct: 629 VLVATDVVGRGIDIPDVAHVINYDMP-----KHIEMYTHRIGRTGRAGKSGVATSFLTLH 683 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + + + + E Sbjct: 684 DTEVFYDLKQMLVQSNSAVP-PELARHEASRFK 715 >UniRef50_B7VSB7 ATP-dependent RNA helicase n=74 Tax=Gammaproteobacteria RepID=B7VSB7_VIBSL Length = 689 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 59/406 (14%), Positives = 120/406 (29%), Gaps = 18/406 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + L ++ + + + + L + Sbjct: 39 LALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKIN- 97 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 N+ + + T+ + G + + G L Sbjct: 98 ---LNQHKPQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGA 154 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + D A L E L + E + Q + Sbjct: 155 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 214 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAIN 446 SAT + + + + + D+ +S + + + Sbjct: 215 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 274 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V T++ E L ++L G + LH DI R + ++ G D+LV +++ Sbjct: 275 -ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVV 333 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+P ++ V D S I IGR R GKAIL M + I Sbjct: 334 ARGLDVPRITHVFNYDIPF-----DVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 388 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + ++ + + + + K ++ ++ A G Sbjct: 389 ERVTKSQMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGL 434 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 71/447 (15%), Positives = 134/447 (29%), Gaps = 30/447 (6%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D+ V+ L + + + L + Sbjct: 11 DKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVG---- 66 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + ++ L + +++ +L S + + G P L +VV Sbjct: 67 QQGVQSLILAPTRELAMQVAEQLREFSKGQK--VQVVTVFGGMPIERQIKALKRGPQIVV 124 Query: 338 DESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-LAPQTIYVSAT 395 I + + L E + + + QT+ SAT Sbjct: 125 GTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSAT 184 Query: 396 PGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINER 448 E + + T +D + + D + + E Sbjct: 185 MPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFL--DVHQPEL 242 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V TKR ++LT L G + LH DI +R+E+++ + + D+LV ++ Sbjct: 243 AIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAAR 302 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ VS V D + S IGR R G A+ + + I + I + Sbjct: 303 GLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIED 357 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 RR K + + DI QN + + + + + Sbjct: 358 VNNRRMKALRPPHRKEVLKAR----EDDIKDRVQNWMSRENE---PRLQRISSELLKEYD 410 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEE 654 S + + + EL + L FE+ Sbjct: 411 STELVASLLQELVEANDEVEVQLTFEK 437 >UniRef50_C1ECK7 Predicted protein n=8 Tax=Eukaryota RepID=C1ECK7_9CHLO Length = 462 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 50/442 (11%), Positives = 109/442 (24%), Gaps = 44/442 (9%) Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + +V+ ++ + + V + F + Sbjct: 47 TPVAEFSEAGFSKDVLAATANFKKPSPIQAQSWP-IVLSGHDMVGIAATGSGKTMAFGLP 105 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + + L L + + G Sbjct: 106 ALMQILAQP----KCAPGSPQCLVLAPTRELAQQTAKVFEDAGTACG-VRCVCVYGGAPK 160 Query: 305 GIENYSRFLS--GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + P L D++ + + + + + + Sbjct: 161 WEQKKLMQQGGGCAVIVATPGRLRDFMNDGDVKLDKVTMLVLDEADR------------- 207 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----- 417 L + + QT+ SAT + + + V G Sbjct: 208 ----MLDLGFEPEIREIAGKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAEGLK 263 Query: 418 ---LLDPIIEVRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGE 471 + ++EV + L +++ + R LV L K+ L E L Sbjct: 264 ASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPRTLVFALYKKECARLHENLRRQNW 323 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + +H D+ +R + + G +L+ ++ GLD+ V V + Sbjct: 324 QAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARGLDIKGVEYVINYTFPL-----T 378 Query: 532 ERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + IGR R G A + + + A + R + + Sbjct: 379 TEDYVHRIGRTGRAGQTGLAHTFFTQHDKARAGELANVLREAG--AEVPTALTAFGTHVK 436 Query: 591 KKVVDILALGQNIAKTKAKGRG 612 KK + T K + Sbjct: 437 KKESKLYGAHFKDIDTSVKAKK 458 >UniRef50_B5EAF1 DEAD/DEAH box helicase domain protein n=3 Tax=Deltaproteobacteria RepID=B5EAF1_GEOBB Length = 471 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 59/383 (15%), Positives = 107/383 (27%), Gaps = 38/383 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ + L F + V V+ Sbjct: 21 YVTPTPIQLQAIPSVI-SGQDVLGLAQTGTGKTAAFGLPMLHRLVQEERGHVRG------ 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + T+ E +N+ G + R ++ G T Sbjct: 74 -------------------LVLAPTRELAEQINDALNGMGKQTRLRSVTV-YGGVNINTQ 113 Query: 326 FDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + I G R L E K Sbjct: 114 IKKLKEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALP 173 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLLSEIR 440 Q + SAT + + + + V P V PV + L Sbjct: 174 GKRQNLMFSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEM 233 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + E VL+ T TK A+ + E LE+ G + L ++ R + R G F ++ Sbjct: 234 LKHTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIM 293 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ +S V D + + IGR R G A Sbjct: 294 VATDIAARGIDVSLISHVINYDIP-----DTPEAYTHRIGRTGRAAKTGDAFTMVTSEDD 348 Query: 560 SMAKAIGETERRREKQQKYNEEH 582 ++I + + ++++ Sbjct: 349 YTVRSIEKVLGTKIERRRIEGFD 371 >UniRef50_A9KIB7 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIB7_CLOPH Length = 514 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 105/405 (25%), Gaps = 44/405 (10%) Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 + + + I+ P + I L +E Sbjct: 1 MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLE--------GRDILGCAQTGTGKT 52 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 F + + L L E + + + Sbjct: 53 AAFALPILQSL-------SKGEGSGVRALIITPTRELAIQI-YESFECFGKYTSLKQSVI 104 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G ++ S P L D + + + + + Sbjct: 105 YGGVGQSLQVNSLKAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQ--------- 155 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 L N K + QT+ SAT + + + + Sbjct: 156 --------MLDMGFLNDIKKVIKLLPKTRQTLLFSATMPKEIESLATNLLNNPEIIKISP 207 Query: 419 LDPII---EVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERV 473 + + E + +S + ++ RVLV T TK A+ + + L + + Sbjct: 208 VTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKMSRVLVFTKTKHGADRVADKLNKAKVKT 267 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + +H R + D + G+ VLV ++ G+D+ E+S V D Sbjct: 268 QAIHGGKGQNARQTALSDFKEGKIKVLVATDIAARGIDISELSYVVNYDIPN-----QAE 322 Query: 534 SLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 I IGR R G AI + + I + + Sbjct: 323 IYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHIGMVIPEVP 367 >UniRef50_C7JBN9 DNA/RNA helicase n=19 Tax=cellular organisms RepID=C7JBN9_ACEP3 Length = 636 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 53/387 (13%), Positives = 106/387 (27%), Gaps = 18/387 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +EL + + +S + I + + + Sbjct: 160 LELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEILSD 219 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ L + L++ + L GE + L Sbjct: 220 SRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALL--IGGESMADQKEVLNRGV 277 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + + + E L K QT+ Sbjct: 278 DVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLF 337 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + + I V ++ + L ++ A Sbjct: 338 SATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQ 397 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N +V KR + LT+ L +HG LH D+ R + + E VLV ++ Sbjct: 398 N--AIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDV 455 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ +S V D + IGR R G A ++A+A Sbjct: 456 AARGIDIGGLSHVFNFDLPFH-----AEDYVHRIGRTGRAGREGHAYSIATPYDKALAEA 510 Query: 565 IGETERRREKQQKYNEEHGITPQGLNK 591 I + + + + + + Sbjct: 511 IEKLTGKEIPRMALDGVKQLEWSDEKR 537 >UniRef50_Q553B1 ATP-dependent RNA helicase ddx46 n=1 Tax=Dictyostelium discoideum RepID=DDX46_DICDI Length = 1151 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 57/426 (13%), Positives = 117/426 (27%), Gaps = 28/426 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLL 281 L F + I + + + + + Sbjct: 524 LKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGM 583 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 ++ + L++ E S + + G L +VV Sbjct: 584 IALIMSPTRELALQIHVECKKFSKV--LGLRTACVYGGASISEQIAELKRGADIVVCTPG 641 Query: 342 VTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + + R L E + + QTI SAT Sbjct: 642 RMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFP 701 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + G ++ +EVRP T+ L+ + ++L Sbjct: 702 PKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKG-QIL 760 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T + ++L L + LH D +R E I D + +L+ L GL Sbjct: 761 IFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGL 820 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ +++LV D + +GR R G A + + +I + Sbjct: 821 DIKDLNLVVNFDCP-----DHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKAL 875 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + + LN G+++ G+ + ++ Sbjct: 876 EQSGSKVPD------ELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEEDKKNIER 929 Query: 630 KALQQK 635 K ++ Sbjct: 930 KQQRKA 935 >UniRef50_A7HKQ8 DEAD/DEAH box helicase domain protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKQ8_FERNB Length = 571 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 59/396 (14%), Positives = 120/396 (30%), Gaps = 20/396 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK----THYVTPRERIVQAMEEIKEELA 268 R E F E L + + I + + + + L Sbjct: 19 RFEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLL 78 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 R + NK ++ +T + L++ EL G ++ G+ F Sbjct: 79 ERID--FKANKFVKAIIVTPTRELALQIFEELKSLKG--TKRVKITTLYGGQSLEKQFKD 134 Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L +VV I + L E L + L+ + Sbjct: 135 LEKGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENK 194 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA- 443 +T SAT ++ + + + + T + E D L + + Sbjct: 195 RTFLFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIID 254 Query: 444 -AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + +V TK +++++ L + G LH D +R ++ R + +LV Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ G+D+ ++ V R + IGR R G AI + + Sbjct: 315 TDVAARGIDIDGLTHVINYSVP-----RDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFH 369 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + + + + + I + L K + + Sbjct: 370 FARVKRFAKAKIIKDSIPQVEDILNRQLEKLLDTLK 405 >UniRef50_A8X9Q1 C. briggsae CBR-LAF-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X9Q1_CAEBR Length = 653 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 123/425 (28%), Gaps = 45/425 (10%) Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 I+Q +L+ + + + ++ A DD+ + LF + Sbjct: 183 RDERIEQELFAGQLSGINFDKYEEI--------------PVEATGDDVPQPIGLFSDLSL 228 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + D + +F P ++ L L E Sbjct: 229 HEWIEDNIKTAGYDRQHQFRNGP-DAVHRSVISSGGRKKQYPSALVLSPTRELSLQIYNE 287 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 ++ RT ++ + + L P L D + + + ++ Sbjct: 288 SRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLLDVMEQGLIGLEGCRYL 347 Query: 343 TIPQIGGMYRGDRARKETL-VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + + M + VE+ P T SAT Sbjct: 348 VLDEADRMLDMGFEPQIRQVVEFNRMPP--------------KEERVTAMFSATFPKEIQ 393 Query: 402 EKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + V G + I + L+ + + LV Sbjct: 394 LLAQDFLKQNYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMD-LLDATGDSSLTLVFV 452 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR A DL YL +V +H D+ ER + + R G +LV + GLD+P Sbjct: 453 ETKRGASDLAYYLNRQNYQVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIP 512 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 V V D + IGR R N G A + + ++A+ + + Sbjct: 513 NVKHVINYDLP-----SDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEA 567 Query: 573 EKQQK 577 ++ Sbjct: 568 NQELP 572 >UniRef50_C7LND0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LND0_DESBD Length = 545 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 58/457 (12%), Positives = 114/457 (24%), Gaps = 22/457 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L E ++ + + I + + + + Sbjct: 5 QLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQILG 64 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG--PGEPPPTLFDYLP 330 + N LT + L++ G L G L Sbjct: 65 LTRGNGHHPRALILTPTRELALQV----GESIKAYARKVSLRCTVAFGGVRIEPQIARLE 120 Query: 331 ADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 ++V + E L + +T Sbjct: 121 RGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRT 180 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQR 442 + SAT + + + + ++ LL I Sbjct: 181 MLFSATYTPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLI--E 238 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +R+LV T+ A LT+ L HG V LH R + + + G+ +LV Sbjct: 239 KQKQDRILVFARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVA 298 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ GLD+ + LV D S + IGR R +G A+ ++ Sbjct: 299 TDVAARGLDISNLPLVVNYDIPN-----SPEDYVHRIGRTGRAGVSGIAVSLVSPEERNL 353 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 AI + R + + + + A K + + Sbjct: 354 LLAIEDLLRHQIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLT 413 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 PK + + ++ + Sbjct: 414 VQGRGKKPKDAGPESTTRGNKNEKSDARKAEDKDTRP 450 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 123/664 (18%), Positives = 228/664 (34%), Gaps = 73/664 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + A++ GL Q +LGV G + A + D P +++ P + Sbjct: 2 QGLTEFLRETPALKTAVSGLAR-YKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGER 59 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 AA L ++ P + F + + + + + I R+ + Sbjct: 60 EAAALADDLVTLLPGRGIFVFS-------------AWELLPVQVLAYSREIGVRRMRVLE 106 Query: 129 AMLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A++ + VV+A V A+ L P + + + L G A+ RL + Y Q Sbjct: 107 ALITGTNPVVIAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG + D+FP + +RVE F +E+ L FDP T + + R T+ P T Sbjct: 167 DTAGQFSIRGGIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPAT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V + +E + E + L + +RL + + L ++ + GIE Sbjct: 226 ELVVEDDAWEAGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIE 285 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + + TL DYL G++ V E + L+E G Sbjct: 286 DLLAYFYPQA-----ATLMDYLGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRL 340 Query: 368 LPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LP + + F ALAP +T+Y+S S + EVR Sbjct: 341 LPGQFRLYLDREQLFAALAPFRTVYLSLFG--RVGAFSRS-----------DREIRFEVR 387 Query: 427 PVATQVDD---LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + +L EIR+R +RV++ T A L L + G + ++ V Sbjct: 388 ELPGNLGRTGAVLGEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAAFQAY-ELGQV 446 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + V VG+ L +G ++ E L + + + G +R Sbjct: 447 Q-----------PGQVAVGVGRLNKGFEIAESQLAVLTEREIYGKQLQDRR--------- 486 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + +Y+ + + ++ + I LG++ Sbjct: 487 ---EPYRLRRRTLDELN-LAPGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLINYLGEDK 542 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P + V + + + L G ++ E ++ +L Sbjct: 543 L---------YVPTDQLGLVQKYIGAEGETPRCSRLGGSEWARSKKRVREAVREMAQELL 593 Query: 664 QLRE 667 +L Sbjct: 594 KLYA 597 Score = 208 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 68/467 (14%), Positives = 134/467 (28%), Gaps = 39/467 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 D + E F+ D L + P + + ++ Sbjct: 609 ADNPWQRE-FELAFPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVF 667 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + Q Q E N + + R + + Sbjct: 668 KAVTDGKQAAVLVPTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVR------EQKQVLA 721 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L A + +V +H + + + + Sbjct: 722 DLAAGKVDIVIGTHRLVQDDVQFADLGLIVVDEE--------QRFGVLHKEKLKLRHPNV 773 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAIN 446 I ++ATP L S + D + T LD V + L+ + + A Sbjct: 774 DVITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARG 833 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + + +L+E H + + +++ D G +DVLV Sbjct: 834 GQVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTT 893 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+ V+ + + +AD+ G + L Q GR R+ + + + Sbjct: 894 IIETGLDITNVNTLVVKEADQLGLAQ----LYQLRGRVGRSNRLAYAYFTFRRD----RL 945 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +GE +R + + + G G D+ G + S V Sbjct: 946 LGEAAEKRLRAIRDFTDFG---SGFRLAKRDLEIRGAGNLLGTEQHGNISV-------VG 995 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLREL 668 +M + L++ + EL+G E A D + + Sbjct: 996 FEMYCRLLEESVRELKGEAPPEEFETVVEVPVTAFLPDDYIPDPEQK 1042 >UniRef50_D2B0M6 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0M6_STRRD Length = 697 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 55/362 (15%), Positives = 110/362 (30%), Gaps = 17/362 (4%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E + L +T + + + + R +N Sbjct: 48 PEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRVGKPRKN 107 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 K + + +++ +L +G + G + L ++V Sbjct: 108 RKKPRGLVVVPTRELAVQVTEDLVTAAGK--LGSRILTVYGGRAYEPQVEALKQGVDVIV 165 Query: 338 DESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + L E L + + QT+ SAT Sbjct: 166 GTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTMLFSATL 225 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAINER-- 448 + S + D P D + + + + R Sbjct: 226 PGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIVGRLLQCDGRGL 285 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TKR + + E L+E G +H D+ +R + +R R G+ DVLV ++ Sbjct: 286 TMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVAAR 345 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ +V+ V D + E++ + IGR R G A+ + + + K I Sbjct: 346 GIDVDDVTHVVNYDCP-----QDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTRWKVINN 400 Query: 568 TE 569 Sbjct: 401 AL 402 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 52/394 (13%), Positives = 107/394 (27%), Gaps = 45/394 (11%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + FP ++ + + ++ F I V P E Sbjct: 87 GITHPFPIQAMTLPVALQA--------HDIIGQAKTGTGKTLGFGIPLLNRVVAPGEPGW 138 Query: 258 QAMEEI--KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + + + L + + + G + Sbjct: 139 DELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQIEQLQRGA 198 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P + D L L ++ + + + M Sbjct: 199 EVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEML-----------------DLGFLPD 241 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----------PTGLLDPIIEV 425 K T+ SAT + + + + ++ Sbjct: 242 VEKILSRLPAKRHTMLFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYR 301 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +++ L ++ R +V TKR A +++ L + G +H D+ R Sbjct: 302 AHALDKIEVLARLLQAEGR--GRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAR 359 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + +R LR G+ DVLV ++ G+D+ +V+ V ER+ + +GR R Sbjct: 360 EQALRALRHGKIDVLVATDVAARGIDVDDVTHVVNYQCP-----EDERTYLHRVGRTGRA 414 Query: 546 V-NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 G A+ + D I + + Sbjct: 415 GNKGTAVTFVDWDDMPRWSLIDKALETGHPEPVE 448 >UniRef50_A9GRX1 DeaD2 protein n=5 Tax=Bacteria RepID=A9GRX1_SORC5 Length = 478 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 52/384 (13%), Positives = 97/384 (25%), Gaps = 38/384 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ + +E L F + + Sbjct: 21 YSAPTPIQQQAIPPILEGNDLLG-CAQTGTGKTAAFALPILQRLAQ----SGGPRQGGLR 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + + G + + P L Sbjct: 76 VLVLTPTRELAAQVA-ESFTTYGKNLGLRTAVVFGGVGQRPQMEALRRGVDVLVATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + M L + + Sbjct: 135 LDLCSQGIAPFGRLDTLVLDEADRM-----------------LDMGFIHDIRRVLAMLPE 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT L+ + + V +D + + + L Sbjct: 178 RRQTLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHV 237 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ A R +V T TK A + + L +H + R + + G Sbjct: 238 LKDPALR--RAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTS 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ G+D+ ++S V D S + IGR AR +G A+ + D Sbjct: 296 VLVATDIAARGIDIDDISHVINYDLPNI-----PESYVHRIGRTARAGASGVALSFCDSE 350 Query: 558 TPSMAKAIGETERRREKQQKYNEE 581 + I ++R Sbjct: 351 ERAYLADIERLIQKRLPLLADPGV 374 >UniRef50_C1EHH3 Predicted protein n=2 Tax=Micromonas RepID=C1EHH3_9CHLO Length = 1063 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 53/479 (11%), Positives = 130/479 (27%), Gaps = 44/479 (9%) Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA-------R 183 + + D + VA +I + + + + + L R Sbjct: 336 MSKADKLGVADHDSIDYPPFRKNFYIESYEIARMTKAEVKELRAELE--GIRCRGKDVPR 393 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + + + R + + ++ + + + + + Sbjct: 394 PIKTWAQAGLSNRVMELIRRSGFDKPMPIQCQALP-VIMSGRDCIGVAKTGSGKTLSYVL 452 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL-EEQRLTQRTQFDLEMMNELGY 302 H + + +E + E + ++ + R + + G Sbjct: 453 PMLRH-----VKDQRPIESGDGPIGMIMGPTRELVTQIGKDCKKFGRAAGLVAVSVYGGS 507 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + P + D L G + R L Sbjct: 508 GVATQIGELKRGCEIVACTPGRMIDVLTTG--------------AGRITNLRRVTYMVLD 553 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----- 417 E + + + QT+ SAT + + + + V G Sbjct: 554 EADRMFDMGFEPQITRIMNNLRPDRQTVMFSATFPHAMEALARSALTNPVEIQVGGRSVV 613 Query: 418 --LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 ++ I+E+R + +L + + ++++ ++ + + L G Sbjct: 614 NSDIEQIVEMRAEEDRFLRVLELLGEWYERG-KIIIFVASQDKCDQVFRDLLRSGYPCLS 672 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH + +R I D + ++LV ++ GLD+ + LV D Sbjct: 673 LHGGKEQSDRECTIADFKSDVCNILVATSVAARGLDVSGLRLVVNYDTPNH-----LEDY 727 Query: 536 IQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + +GR R G A+ + + A + + ++ + KK Sbjct: 728 VHRVGRTGRAGNKGTAVTFISQEEEKFAPDLVKAMTDAKQPVPSDLRLMADEYAKKKKE 786 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 61/393 (15%), Positives = 118/393 (30%), Gaps = 20/393 (5%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + + + L AR + + + T+ + Sbjct: 33 QEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLARTQNE----VREPQVLVLAPTRELAQ 88 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGD 354 + + ++ G + F L VV + I + + Sbjct: 89 QVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGPQWVVGTPGRVMDHIRRGTLKLE 148 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 R L E L + + Q SAT + + + Sbjct: 149 GIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQIKAVAEKHLREPTEI 208 Query: 415 PTGLL---DPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEH 469 + IE + + D + + + ++V TK+ E++ +Y+ H Sbjct: 209 RIKSKTATNESIEQKYWLVKGVDKNQALLRICETSEFDAMMVFVRTKQATEEVADYMRSH 268 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G R L+ D+ +R + L+ G+ D+LV ++ GLD+ +S V D Sbjct: 269 GLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAARGLDVERISHVVNYDIP----- 323 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 S + IGR R G+AIL+ M I R++ +Q + + + Sbjct: 324 YDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVTRKKIQQIELPTAKEVNAKR 383 Query: 589 ----LNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + I I K A +P Sbjct: 384 RDQFKVRALEHIEGRDIEIFKKIASEILAEQPA 416 >UniRef50_Q4PFD9 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Ustilago maydis RepID=PRP5_USTMA Length = 1156 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 68/474 (14%), Positives = 131/474 (27%), Gaps = 29/474 (6%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENN 278 ++ + + + I + + + + + +E + Sbjct: 488 LDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPS 547 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + +T + +++ E+ + G P + +VV Sbjct: 548 EGPVGIIMTPTRELAVQIYREMRPFIKA--LGLRAACVYGGAPISEQIAEMKKTADIVVA 605 Query: 339 ESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 I + G + R L E + + +K QT+ SA Sbjct: 606 TPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQTVLFSA 665 Query: 395 TPGNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQR--AA 444 T + + + + G ++ I+EVR T+ LL + + Sbjct: 666 TFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILGELYNRE 725 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + R L+ + A+DL + L G LH D V+R E I D + G ++ + Sbjct: 726 KDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATS 785 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+ ++ LV D + GR R G I + A+ Sbjct: 786 VAARGLDVKQLKLVINYDVPNH-----MEDYVHRAGRTGRAGQKGTCITFITPEQDRYAR 840 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + E A G R Sbjct: 841 DIIAALKASAAHVPPELEAMAASFKEKLAAGKAKAAGSGFGGKGLDRFELDREKTLKAQK 900 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR----ELFIAAS 673 K A+ A+ DQL +++ E+ A+ Sbjct: 901 SAY-GEADDDAKAAAAGDSSEDKAKTGAPPGASSSEDQLSKIQGMKIEIMQGAA 953 >UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7VM16_9ANNE Length = 990 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 59/408 (14%), Positives = 123/408 (30%), Gaps = 48/408 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP--RERIVQAMEEI 263 ++ + + F + T + V+ + Sbjct: 537 YEKPTPIQ-KWAVPVIISGRDMMGCAQTGSGKTASFLLPMLTKMLGTGFEPPCVEDGCAM 595 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L E ++ + T ++ G S + P Sbjct: 596 PLMLVLAPTRELVLQIFHETRKFSFDT-VVRAVVAYGGVSSSYQEKEILKGAHIVIATPG 654 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D+ + + ++ + ++ M Sbjct: 655 RLIDFFGKKRINLCKLKYLVLDEVDRMLD-----------------MGFHTAIASILSQG 697 Query: 384 A------LAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVA 429 QT+ SAT + + + D + G ++ + + Sbjct: 698 ESGMPSVNNRQTVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQYVLLMEQE 757 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + D LL +++R +++V+ KRMA+ ++ +L + +H ++ ER + + Sbjct: 758 NKRDKLLEIVQKRGED--KIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKAL 815 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 RD R G +LV N+ GLD+PEV V D + IGR R G Sbjct: 816 RDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPH-----IEEYVHRIGRPGRCGNTG 870 Query: 549 KAIL-YGDKITPSMAKAIGETERRREKQQKYNEE----HGITPQGLNK 591 KA + + +A+++ + ++ E I G ++ Sbjct: 871 KATAFFVAEADNHLARSLVKVLSDALQEVPEWLEKMAADNIGMGGFSR 918 >UniRef50_UPI000186EE68 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE68 Length = 755 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 105/393 (26%), Gaps = 55/393 (13%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 A++ + + + + + + H + + L Sbjct: 165 KPTAIQAQGWPIAL-SGRDMVGIAQTGSGKTLAYALPATVHITNQKPLSKG---DGPIAL 220 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + G G + P L D Sbjct: 221 VLAPTRELAQQIQSVAKDFGASCS-IRNTCIFGGAPKGSQARDLERGVEIVIATPGRLID 279 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L + +++ + + L + + K E Sbjct: 280 FLDKGTTNLRRCTYLVLDEADR-----------------MLDMGFEPQIRKIIEQIRPDR 322 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEI 439 Q + SAT + + D + G + +EV + + L + + Sbjct: 323 QVLMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEVMQDSEKEGRLTNLL 382 Query: 440 RQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 R N ++L+ TK+ +D+ +++ G +H D ER ++ + R G+ Sbjct: 383 RDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNEFRSGKCA 442 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ G R + IGR R+ G A + Sbjct: 443 VLVATDVAARG---------------------KIRHYVHRIGRTGRSSQMGTAFTFFTPQ 481 Query: 558 TPSMAKAIGETERRREKQQ--KYNEEHGITPQG 588 AK + + K E T +G Sbjct: 482 NARQAKGLVAVLEEASQPINPKVTELLAATTKG 514 >UniRef50_B6K0K2 ATP-dependent RNA helicase Prp11 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K0K2_SCHJY Length = 1056 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 60/415 (14%), Positives = 115/415 (27%), Gaps = 27/415 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLL 281 + + I + + + + L N + Sbjct: 474 IRSLGFEEPSAIQAQAIPAITAGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRPLRNGEGP 533 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 +T + +++ E + + G P L +VV Sbjct: 534 VAVIMTPTRELAVQIFRECKPFAKA--LDLRATCAYGGAPIKDQIAELKRGAEIVVCTPG 591 Query: 342 VTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + + R L E + + ++ Q + SAT Sbjct: 592 RMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRPDRQVVLFSATFP 651 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINE--R 448 + + + G ++ ++EVR ++ LL + + R Sbjct: 652 RAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLELLGELYNTQPDVR 711 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 LV A+ L L + G +H D +R I D ++G FDVL+ ++ Sbjct: 712 TLVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGIFDVLIATSVAAR 771 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ + LV D + +GR R + G A+ + A I + Sbjct: 772 GLDVKSLQLVVNYDCPNH-----MEDYVHRVGRTGRAGHTGVAVTFVTPDQSRYAVGIAK 826 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVV--DILALGQNIAKTKAKGRGKSRPIVEP 620 + ++ E K V A G ++R Sbjct: 827 ALKMSKQ--PVPLELQNLANEFLKNVKSGKEKAAGSGFGGKGLSRLDETRNAERK 879 >UniRef50_B1ZWV2 DEAD/DEAH box helicase domain protein n=9 Tax=Verrucomicrobia RepID=B1ZWV2_OPITP Length = 409 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 53/379 (13%), Positives = 106/379 (27%), Gaps = 39/379 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +D +++ V F + T Sbjct: 21 YTDPTPIQLRAIP-VVLGGGDLIGSAQTGTGKTAAFALPILTRL-------GAHAARAPR 72 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + R R + G G++ P L Sbjct: 73 VLVLEPTRELAAQ-VETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRGVDVIVATPGRL 131 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 DYL + + + + ++ M + Sbjct: 132 MDYLHDRTINLQGVEILVLDEVDRMLD-----------------MGFLPVVKDIIQRCPR 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVA---TQVDDLLSEI 439 QT++ SAT + + + G ++ ++ Q +LL + Sbjct: 175 QRQTLFFSATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFELLEAL 234 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R + VLV + TK A+ + L+ V LH++ +R+E + + G++++ Sbjct: 235 LARTDFDS-VLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEI 293 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 +V ++ G+D+ VS V D + IGR R G A Sbjct: 294 MVATDIAARGIDVAGVSHVINYDVP-----EKPEDYVHRIGRTGRAQAVGDAFTLVTPEN 348 Query: 559 PSMAKAIGETERRREKQQK 577 + I ++ + + Sbjct: 349 AHDVRDIERFIGQKIPELR 367 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 114/381 (29%), Gaps = 40/381 (10%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER-IVQAMEEIKEELAARRKVLLENNKLL 281 F + + + E + L N L Sbjct: 314 GGGDLMACAQTGSGKTAAFLLPILQQLMADGVAASSFVELQEPEAIIVAPTRELINQIFL 373 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 E ++ T ++ G +G + P L D + + + + Sbjct: 374 EARKFAYGT-CVRPVVVYGGVNTGFQLREISKGCNIVCGTPGRLLDVIQRGWIGLTKLRY 432 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----ALAPQTIYVSATPG 397 + + + L + + QT+ SAT Sbjct: 433 LVLDEADR-----------------MLDMGFEPDMRRLVASPGMPPKENRQTLLFSATYP 475 Query: 398 NYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + D + G ++ ++ + LL ++ R Sbjct: 476 QDIQKLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKYSKREQLLDFLKTIGNE--RT 533 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V TKR A+ + +L + +H D + ER + + D + G+ +LV ++ G Sbjct: 534 MVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSVAARG 593 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGE 567 LD+PEV V D ++ + IGR R G+A+ + D +A ++ Sbjct: 594 LDIPEVQHVVNFDLP-----KNIDEYVHRIGRTGRCGNIGRAVSFYDPEVDSQLAASLVT 648 Query: 568 TERRREKQQKYNEEHGITPQG 588 + +++ E G Sbjct: 649 ILSKAQQEVPSWLEESAFSGG 669 >UniRef50_Q0BSI7 ATP-dependent RNA helicase n=54 Tax=Alphaproteobacteria RepID=Q0BSI7_GRABC Length = 763 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 57/415 (13%), Positives = 104/415 (25%), Gaps = 44/415 (10%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESD-----DIALRVELFDEEVERLSLFDPLTGQIVSTI 238 ++ R F G + A ++ ++ + + Sbjct: 216 PEEVDDRPLFADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMG-RDVLGCAQTGTGKT 274 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 FT+ +A + L L + Q + + ++ Sbjct: 275 ASFTLPMMDIL-----SDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLI 329 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G + P L D GLL+ D + I + M Sbjct: 330 -GGESMNDQRDVLSKGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLD------ 382 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + QT++ SAT + + + Sbjct: 383 -----------MGFIPDVERIVSLLPHNRQTLFFSATMAPEIRRLADAFLQNPKEITVAK 431 Query: 419 LDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + + L +RQ N L+ KR + LT+ L +HG Sbjct: 432 PASVATTITSGLALVGEMDKRKALRHLLRQEKVQN--ALIFCNRKRDVDILTKSLVKHGF 489 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 LH D+ R + + G +LV ++ G+D+ +S V D Sbjct: 490 AAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDVAARGIDIGGLSHVFNFDVPIH----- 544 Query: 532 ERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + IGR R G A AI + + + Sbjct: 545 AEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIEKLINAPIPRIEIEGLERAE 599 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 106/662 (16%), Positives = 216/662 (32%), Gaps = 69/662 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + Q + + L G Q + G+ GS +T IA+++ + QR + + A Sbjct: 3 LEAFMTQTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +Q + ++ P + + A+ + R+ A +A+ Sbjct: 62 SQ-------------LVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRAL 108 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVVV S+S + P + ++VG D A+ ++L + YA Sbjct: 109 QSDRPVVVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAA 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG +IDI+P +D +R++ FD EV+ L FDP T + + + P T + Sbjct: 169 PGDFAVRGSIIDIYPLAAD-YPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDF 227 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + A + + T + G G + Sbjct: 228 IL---------TADERATGATALRTTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDP 278 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + DYLP DG+++ + + + + + Sbjct: 279 QLLEFADYLFPEHHQVLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFT 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L+ Q + G L + + ++ Sbjct: 339 QQTFGGELRPIVRADKHAQIMLALFQKGMGSLRF--QAMTNM---------TTRAMQQFF 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ + +EI + + V++ + + + L++ + S +++ Sbjct: 388 GQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLTKSANLQPALTQLV 447 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + L+ G ++PE SLV I +A+ + +R QT+ A R Sbjct: 448 PE-------------RLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAER----- 489 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + + K K+ +T G+++ + I Sbjct: 490 ------LKSYTDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDY---------QD 534 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + + + +S + + KI++L G ++ + I D+L L Sbjct: 535 NAQLFIPVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDLYAKR 594 Query: 670 IA 671 A Sbjct: 595 SA 596 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 75/462 (16%), Positives = 138/462 (29%), Gaps = 38/462 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ + D L P + + ++ A Sbjct: 612 FENDFPYAETPDQLRTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQV 671 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + GY +E +SRF + + L L + Sbjct: 672 AFLVPTTILAQQHYDTMVSRFE--GYPINVEMFSRFRTT----KQIHQAIKDLETGQLDI 725 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + Q + +G + + + ++ATP Sbjct: 726 VVGTHRLLSQDVKFKNLGLVLVDEEQRFGVKHKER--------LKQLKANVDVLTLTATP 777 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLT 455 L S V D V T + V Q + + IR+ +V Sbjct: 778 IPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNR 837 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E ++ RV Y+H + + ++ D G++DVLV ++ G+D+P Sbjct: 838 VDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIP 897 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + +AD+ G + L Q GR R+ A Y K + E +R Sbjct: 898 NANTLFVENADRMGLSQ----LYQLRGRIGRSNR-VAYAYFTYQPN---KVLTEVSEKRL 949 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + K E G G + D+ G K + ++V D+ + L Sbjct: 950 EAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF-------INSVGYDLYTQMLS 999 Query: 634 QKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFIAA 672 + + G Q + E EA D + ++ Sbjct: 1000 DAVAKKRGQKTQPKTDTTIELGVEAYLPSDYIEDEQQKIEMY 1041 >UniRef50_UPI00017925EA PREDICTED: similar to DEAD box ATP-dependent RNA helicase n=1 Tax=Acyrthosiphon pisum RepID=UPI00017925EA Length = 569 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 109/399 (27%), Gaps = 40/399 (10%) Query: 193 FRVRGEVIDIFPAESD--DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +++ + + ++ + + + + + + H + Sbjct: 190 FSSYPDIMKVIKKQKFIVPSPIQCQAWP-IIMSGHDLIAIAQTGTGKTLAYILPALIHLL 248 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG--YCSGIEN 308 ++ + L L E + + G + Sbjct: 249 QQPTPRIKRI--GPSVLILGPTRELVLQIHDEITKYL--HNNIKVVCVYGGGVSALTHQE 304 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + P L D + + + D L E L Sbjct: 305 LIQAEKPDIIVATPGRLNDLVGIQAI-----------------KLDHVSYMVLDEADRML 347 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------- 420 N+ QTI SAT + + + G LD Sbjct: 348 DMGFKNQIELSLRHIRPDKQTILTSATWPTAVQNLANYFAKNPLHITIGSLDLSTVDTVT 407 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I + + L + I + N++V++ K + + E R +H Sbjct: 408 QKIIILKEHQKEGWLDNFISNDLSKNDKVIIFMRKKTSVDKMYENFNSKNIGCRCIHGGR 467 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R + D+R G +L+ ++ G+D+ ++SLV D + + +G Sbjct: 468 LQADREASLADIRNGVVSILIATDVASRGIDIHDISLVINYDFPL-----NIEEYVHRVG 522 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 R R G AI K A A+ + ++ Sbjct: 523 RTGRAGKTGSAITLFSKYDKFNASALIGVLEKSKQPIPP 561 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 123/430 (28%), Gaps = 30/430 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E V+ +S + + + + Sbjct: 9 IGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVI----GRSSTGTGKTAAFGIPAVE 64 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 +E+ + + T+ + + ++ G P L A Sbjct: 65 RIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRALRA-A 123 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +V+ + + R D R L E L + QT+ Sbjct: 124 NIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQTVLF 183 Query: 393 SATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT L+ + + D ++ P A ++D L + + Sbjct: 184 SATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDAL--NLLLQYHD 241 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +R +V TK M + LTEYL +HG R +H D+ R ++++ R G+ +LV ++ Sbjct: 242 PKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDV 301 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD-KITPSMAK 563 G+D+ + V D + I IGR R G + + Sbjct: 302 AARGIDVENIEAVFNFDIP-----QEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIR 356 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ I + KK A + + + D + Sbjct: 357 QLRRFINADIREAPLPIGDEI----VRKKREKFAARVARTL----EADEYGKWGEQLDAI 408 Query: 624 PMDMSPKALQ 633 + Sbjct: 409 AAERGCDMRD 418 >UniRef50_C7MCD0 DNA/RNA helicase, superfamily II n=2 Tax=Actinomycetales RepID=C7MCD0_BRAFD Length = 669 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 115/413 (27%), Gaps = 24/413 (5%) Query: 225 SLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 D L S I I P + + L A L + Sbjct: 97 RAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAAIDPSLREVQA- 155 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ + + + G P L +VV Sbjct: 156 ---LVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERALARGAQVVVGTPG 212 Query: 342 VTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + R D R L E L + Q SAT Sbjct: 213 RVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTRQVALFSATMPAAI 272 Query: 401 LEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + D V + V P + L + + E +V Sbjct: 273 QRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLAT--SDAEAAIVFV 330 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 T+ AE++ L G + D+ ER +I+ LR G VLV ++ GLD+ Sbjct: 331 RTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVATDVAARGLDVE 390 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 + LV D + S + IGR R G+A+ + K I ++ Sbjct: 391 RIGLVVNFDVP-----KEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNIERATKQT 445 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++ L ++ + A + + + G+ + D + Sbjct: 446 LAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDPLE 498 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 53/447 (11%), Positives = 124/447 (27%), Gaps = 69/447 (15%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +L+ + +L + + Q ++ I + ++ +D Sbjct: 13 DTLLKSINDLGFEKPSQIQ------------------AEAIPVAIQGYD--------LIG 46 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F H + + + L E +RL++ Sbjct: 47 QAQTGTGKTAAFGCGIINHI---------SKKSGLSAIILAPTRELAIQVNDELKRLSK- 96 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + + P + D++ + + + + + Sbjct: 97 YDDLTILPVYGGDPITNQIRALKRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + QT+ SAT + + + + Sbjct: 157 MLN-----------------MGFIDDLEDIIKQLPSERQTLLFSATMPDQIRKLAKRYMK 199 Query: 410 -DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + T+ + L + ++ TK+ ++ Sbjct: 200 PDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDF--DTPSSAIIFCRTKKGVDE 257 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L E ++ G V +H D+ R+ ++ + G + LV ++ G+D+ ++ V Sbjct: 258 LVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVAARGIDVEGITHVINY 317 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + S + IGR R G A SM K I + ++ Sbjct: 318 DLP-----QDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVTKSDISRKNIPT 372 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTK 607 + I + D+ + +K Sbjct: 373 VNDIFNSKSKSILEDVTNTINDSDYSK 399 >UniRef50_P44586 Cold-shock DEAD box protein A homolog n=29 Tax=Pasteurellaceae RepID=DEAD_HAEIN Length = 613 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 63/447 (14%), Positives = 129/447 (28%), Gaps = 20/447 (4%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ +S T + + + + L A+ ++ Sbjct: 16 ILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKH-- 73 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + T+ + + + G+ L +VV Sbjct: 74 --PQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGT 131 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + I R L E L + QT SAT Sbjct: 132 PGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPE 191 Query: 399 YELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + D +D + + LL + + ++ Sbjct: 192 PIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL--EVEDFDAAII 249 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK D+TE LE++G R L+ D+ R + + LR G D++V ++ G+D Sbjct: 250 FARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAARGID 309 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + +SLV D S + IGR R G+A+L+ + + + I + Sbjct: 310 IERISLVVNYDIPL-----DAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + + + + K V I ++ + + + + D + + Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQ 657 L Q +L + E + Sbjct: 425 MLLQGKQKLILPPDPPMEKRRRERNDR 451 >UniRef50_Q30PP0 DEAD/DEAH box helicase-like protein n=11 Tax=Bacteria RepID=Q30PP0_SULDN Length = 540 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 50/364 (13%), Positives = 98/364 (26%), Gaps = 22/364 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E + + + I V Sbjct: 24 EILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNNINPNDGVG 83 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ +++ + G +R ++ G D + +VV Sbjct: 84 I-----LVITPTRELATQVSDELFKYGRNIGARTVTV-YGGSSYNRQIDLIQRGASVVVA 137 Query: 339 ESHVTIPQIGGMYRGDRAR-KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + D A L E L + + + QT+ SAT Sbjct: 138 TPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMP 197 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + ++ V + + D ++ + A + + Sbjct: 198 KPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEACQ--KSI 255 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TK + L+ L G LH D++ +R +I+ + VLV ++ G+ Sbjct: 256 VFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGI 315 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 + +S V S + IGR R GKAI + + I Sbjct: 316 HVDNISHVFNYHIPF-----DPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKV 370 Query: 570 RRRE 573 Sbjct: 371 GTTM 374 >UniRef50_Q28T45 DEAD/DEAH box helicase-like protein n=18 Tax=Alphaproteobacteria RepID=Q28T45_JANSC Length = 644 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 105/406 (25%), Gaps = 44/406 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + ++ + + FT+ T +A Sbjct: 27 VEAGYESPTPIQAGAIPPAL-AGRDVLGIAQTGTGKTASFTLPMITML-----ARGRARA 80 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L L + + + + G + + Sbjct: 81 RMPRSLVLCPTRELAAQVAENFDIYAKHVK-LTKALLIGGVSFKEQEQAIDKGVDVLIAT 139 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D+ L++ D + + + M L + Sbjct: 140 PGRLLDHFERGKLILNDVKVMVVDEADRM-----------------LDMGFIPDIERIFG 182 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVA--------- 429 QT++ SAT + + + IE R + Sbjct: 183 LVPFTRQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQ 242 Query: 430 --TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + D L + I ++ K + + + L++H +H D+D RM Sbjct: 243 AKMKRDMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMR 302 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + R G +LV ++ GLD+P VS V D + IGR R Sbjct: 303 TLAGFRDGSITLLVASDVAARGLDIPNVSHVINYDVPSH-----AEDYVHRIGRTGRAGK 357 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 G AI AI ++ + + + G K Sbjct: 358 TGVAITLCVPSDEKYLGAIEGLIKQPIPRAEAPMDAGTPKAETEDK 403 >UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida RepID=DBP3_CANAL Length = 564 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 49/411 (11%), Positives = 115/411 (27%), Gaps = 45/411 (10%) Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 ++ + ++ + + + F + Sbjct: 153 PILSFDQVQLTSAITSKLSKFDKPTPIQSVSWP-FLLSGKDVIGVAETGSGKTFAFGVPA 211 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + +T + + E + + + + + G S Sbjct: 212 INNIIT--TGNTKTLS------VLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSK 263 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + + + P L D + + + L E Sbjct: 264 DDQIRKIKTANVVVATPGRLVDLINDGAI-----------------NLGKVNYLVLDEAD 306 Query: 366 FRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTG------- 417 L + + QT+ +AT E + + V G Sbjct: 307 RMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSA 366 Query: 418 --LLDPIIEVRPVATQVDDLLSEIRQRAAI---NERVLVTTLTKRMAEDLTEYLEEHGER 472 + ++EV + L+ +R+ A + ++L+ L K+ A + +L+ + Sbjct: 367 NKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFS 426 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V +H D+ +R + + G+ ++L+ ++ GLD+P V +V L + Sbjct: 427 VAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPL-----TI 481 Query: 533 RSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + IGR R G A + ++ A+ R + Sbjct: 482 EDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEELLK 532 >UniRef50_Q8YXJ0 ATP-dependent RNA helicase n=24 Tax=Cyanobacteria RepID=Q8YXJ0_ANASP Length = 513 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 108/396 (27%), Gaps = 20/396 (5%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E VE L + + V + + R Sbjct: 13 ERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDP---QQ 69 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K ++ LT + +++ + + G N G+ L +VV Sbjct: 70 KAVQAIVLTPTRELAIQVHDAMAQFVG--NSGLRTLAIYGGQSIDRQMLQLKRGVHIVVG 127 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + + D+ + L E L + K QT SAT Sbjct: 128 TPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMP 187 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + V ++ + + P L I E L Sbjct: 188 PSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPIL-EMEDPETAL 246 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T+R A +LT L+ G V H D+ R ++ R + +V ++ GL Sbjct: 247 IFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGL 306 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ ++S V D S + + IGR R G AI + Sbjct: 307 DVDQLSHVINYDLP-----DSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHV 361 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 R+ + I + + K + Sbjct: 362 RQNWQLLSIPTRAQIEARHILKLQEQVREALAGERL 397 >UniRef50_B7VQT9 ATP-dependent RNA helicase n=15 Tax=Bacteria RepID=B7VQT9_VIBSL Length = 523 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 97/381 (25%), Gaps = 34/381 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E V FT+ + + Sbjct: 21 YDKPSPIQ-EKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEMLSKGP----RVRQNQVR 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + G + P L Sbjct: 76 ALVLTPTRELAAQVNG-SVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVLVATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + M L K F Sbjct: 135 LDLYNQNAVRFDQLEILVLDEADRM-----------------LDMGFIRDIRKILAFLPK 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQR 442 Q + SAT + + G V + V + P +E + + Sbjct: 178 KRQNLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKL 237 Query: 443 AAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 N +VLV + TK A L +LEE +H + R + + + + G+ VL Sbjct: 238 IKDNDWRQVLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVL 297 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+P++ V D + IGR R GKAI Sbjct: 298 VATDIAARGIDIPQLPQVVNFDLPNV-----SEDYVHRIGRTGRAGEVGKAISLVCADEV 352 Query: 560 SMAKAIGETERRREKQQKYNE 580 I ++ ++++ Sbjct: 353 GELFGIERLIQQVLERRELEG 373 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 62/410 (15%), Positives = 113/410 (27%), Gaps = 28/410 (6%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + + + E + + + ++ E Sbjct: 32 PLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSRERARPPRAIVVAPTRELAKQVAEEF 91 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKE 359 G + L +VV I + Sbjct: 92 SKSGV----GLTTVTVYGGASYAPQENALRRGVDVVVGTPGRLIDHLERGNLDLSAVEFA 147 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---T 416 L E L + + + QT+ SAT N S + + V+ Sbjct: 148 VLDEADEMLSVGFADAIETILQKTPDSRQTMLFSATLNNDINRLSRNYLREPVIVDMVGE 207 Query: 417 GLLD--PIIEVRPVAT--QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 G +E V +L+++ E+ +V T TKR A++L L G Sbjct: 208 GKSQAAQTVEHLKVRVGRSRTRVLADLL-TIYNPEKAIVFTRTKREADELANELIHRGLE 266 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 LH D+ +R + R G VLV ++ GLD+PEV LV + Sbjct: 267 AEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDIPEVDLVVQYHLP-----QDP 321 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 S + GR R G AI+ + R ++ + Sbjct: 322 ESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGVRFIERPLPTPKEVQAASAKT 381 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 K + E + + ++ +AL + + ++ G Sbjct: 382 S---------ADMVRKVDSGVAATFQAEAERLFSELGLEALTRALAKISG 422 >UniRef50_UPI000186EE69 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EE69 Length = 610 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 53/398 (13%), Positives = 116/398 (29%), Gaps = 43/398 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + + F + H + +E Sbjct: 221 YFAPTPIQSQGWPIAL-SGQNMVGIARTGSGKTLGFVLPAVIHI-----QHQPKLERGDG 274 Query: 266 ELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 +A E + + + R + G ++ P Sbjct: 275 PIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYGQDRHLRNGTEICVATPGR 334 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D+L + + +++ + + + + + Sbjct: 335 LLDFLNSGTTNLERCTYLVLDEADR-----------------MFDMGFEPQIRSIIDQIR 377 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLL 436 Q + SAT + + D + G ++ I+ V L Sbjct: 378 PDRQVLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKKKLQ 437 Query: 437 SEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + +++ +E + L+ T TK+ ++ + +L++ G R LH R I+R G Sbjct: 438 NVLKEIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFILR----G 493 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 +LV ++ GLD+ ++ V D + I IGR R+ G + + Sbjct: 494 RIKILVATDVAARGLDVSDIRYVINYDYPN-----NMEDYIHRIGRTGRHNATGTSYTFL 548 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 S A + R + + E+ KK Sbjct: 549 TDEDASKAGDLISVLREANQNVDPDLENLAMSAARPKK 586 >UniRef50_C0ZI64 Putative ATP-dependent RNA helicase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZI64_BREBN Length = 493 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 131/458 (28%), Gaps = 25/458 (5%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 E ++ + + I + + L Sbjct: 10 FRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGK----TAAFMLPILNAL 65 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + K + + T+ + + G LS G L + Sbjct: 66 DEGKRDIQALILTPTRELSIQIAKEVEKLGKHLNVNVLSLH-GGTDIDKQLSKLKETVQI 124 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + R L E + + Q + SA Sbjct: 125 VVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSA 184 Query: 395 TPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T + + + + ++ V + + D L+ + Sbjct: 185 TMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVL--EQEQPF 242 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V T+ + LT L+E+G + L+ D+ +R ++++ R F L+ ++ Sbjct: 243 LTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAA 302 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ V+ V D S I +GR R GKAI ++ Sbjct: 303 RGLDVEGVTHVINYDLPN-----DVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFA 357 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVD----ILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + +++ E + + I Q + + + + P+ E Sbjct: 358 KATKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREAIK 417 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P ++ EL L Q+ +N + EA R Sbjct: 418 KKTKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARK 455 >UniRef50_Q7UJ92 Putative ATP-dependent RNA helicase rhlE n=1 Tax=Rhodopirellula baltica RepID=Q7UJ92_RHOBA Length = 485 Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 104/385 (27%), Gaps = 40/385 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + E ++ + F + + + + Sbjct: 22 YETPTPIQAQSIPEILDGNDVLGA-AQTGTGKTAAFALPILQIMWEDDQERREPSKRRGG 80 Query: 266 E--------LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 L L + ++T+ + G + Sbjct: 81 RPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTR-LRSTVIFGGVNQNPQVRELQSGVDT 139 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D + + + D + + + M Sbjct: 140 LVATPGRLLDLVNQGFIDLKDVEILVLDEADHML-----------------DMGFLPDVK 182 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQ 431 + +F Q + SAT + + +VD V P +E Sbjct: 183 RILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQAD 242 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL+ + A LV T TK A+ + L + G + +H + R+ + Sbjct: 243 KPRLLNHFIETKATGS-TLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNK 301 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + E DVLV ++ G+D+ + V D + + + IGR R G+ Sbjct: 302 FKNDELDVLVATDVAARGIDIDGIQTVINYDTPN-----TPEAYVHRIGRTGRAGREGET 356 Query: 551 ILYGDKITPSMAKAIGETERRREKQ 575 +++ AI + + Sbjct: 357 VMFCGGHETKFFIAIEREIKLQIPV 381 >UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH Length = 712 Score = 261 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 56/409 (13%), Positives = 115/409 (28%), Gaps = 40/409 (9%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + ++ V F + H + E Sbjct: 286 VKAGYGCPTPVQKYTIPN-VMNGRDIMGCAQTGSGKTAAFLLPMLHHILDNNCPSNAFEE 344 Query: 262 -EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L L + E ++ + + G + Sbjct: 345 PAQPTGLVICPTRELAIQIMREARK-FSHSSVAKCCVAYGGAAGFHHLKTIHSGCHILVA 403 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ ++ ++ + + M L + Sbjct: 404 TPGRLLDFVEKGKIVFSSLKYLVLDEADRM-----------------LDMGFLSSIKTVI 446 Query: 381 EFEA----LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVA 429 + T+ SAT N E + + + + G + + P Sbjct: 447 NHKTMTPTADRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKF 506 Query: 430 TQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L+ + A +E++LV KR+A+ + YL E R +H D +R + Sbjct: 507 EKKAKLVEMCEEILINADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQ 566 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 + D R G F++LV + GLD+ + +V D + + IGR R Sbjct: 567 ALTDFRTGVFNILVATAVAARGLDIKGIGVVVNYDLP-----KEIDEYVHRIGRTGRLGN 621 Query: 547 NGKAILYGDKI-TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 G +I + D+ + K + + ++ G ++ Sbjct: 622 RGLSISFYDEEADVCLTKDLVKVLSEAKQTVPDWLTQKANTSGYSQTYH 670 >UniRef50_A4X1W4 DEAD/DEAH box helicase domain protein n=4 Tax=Actinomycetales RepID=A4X1W4_SALTO Length = 621 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 65/389 (16%), Positives = 117/389 (30%), Gaps = 23/389 (5%) Query: 207 SDDIALRVEL--FDEEVERLSLFDPLTGQIVST---IPRFTIYPKTH---YVTPRERIVQ 258 + +R E F E R D L ++ I + + + Sbjct: 87 AATAPVRPEAPTFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTG 146 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 L R E + + T+ + + + +G + Sbjct: 147 KTLGFGVPLLERVFAPAEGGDGTPQALVVVPTRELGIQVAKDLHAAGS-TRGVRVLPIYG 205 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPL 377 G + L ++V + + DR R L E L + Sbjct: 206 GVAYEPQIEALRTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVE 265 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQV 432 K QT+ SAT + + S + V G P + T Sbjct: 266 KILAMLPEERQTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHS 325 Query: 433 DDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + + + + R ++ T TKR A+ + L+ G V +H D+ R +R Sbjct: 326 LNKIEIVARILQAKGRGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALR 385 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 R G+ D LV ++ G+D+ V+ V D + + IGR R +G Sbjct: 386 AFRTGKIDTLVATDVAARGIDVSGVTHVLNYDCP-----EDQDTYTHRIGRTGRAGASGV 440 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKY 578 A+ + D + I +T + Sbjct: 441 AVTFVDWDDMPRWRIIDKTLGLEMPEPPE 469 >UniRef50_B0SYC6 DEAD/DEAH box helicase domain protein n=33 Tax=Alphaproteobacteria RepID=B0SYC6_CAUSK Length = 678 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 49/400 (12%), Positives = 104/400 (26%), Gaps = 21/400 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ ++ T + + + L + Sbjct: 7 LGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLMN 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ + + ++ + + S L G L Sbjct: 67 GRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALL--IGGVSFGDQEKKLDRGV 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + + + E L + + QT++ Sbjct: 125 DVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFF 184 Query: 393 SATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVAT-QVDDLLSEIRQRAA 444 SAT + + D V + ++ P + + L A Sbjct: 185 SATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIEKA 244 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E +V K + + + L+ HG +H D+D +R + + R G +LV + Sbjct: 245 QIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVASD 304 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+P VS V D + IGR R G + Sbjct: 305 VAARGLDIPAVSHVFNYDVPHH-----ADDYVHRIGRTGRAGRSGVTYMLVTPADDKGFD 359 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + E+ + G + G Sbjct: 360 KVVKLIGST----PTEEKLDLDYSGAVTIKREGDKRGGGR 395 >UniRef50_Q10MH8 DEAD-box ATP-dependent RNA helicase 24 n=10 Tax=Eukaryota RepID=RH24_ORYSJ Length = 770 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 58/377 (15%), Positives = 109/377 (28%), Gaps = 21/377 (5%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKVLLENNKLLEEQRLTQR 289 + + + + + + LE + Sbjct: 242 PTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPT 301 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 + ++ E + Y+ ++ G F L A +V+ I + Sbjct: 302 RELAHQIYLEAKKFAKP--YNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKM 359 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + RA L E + + QT+ SAT + + Sbjct: 360 KALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREIL 419 Query: 409 VDQVVRPTG-------LLDPIIEVRPVA-TQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 D + G + ++ V P ++ LL ++ + VLV K + Sbjct: 420 TDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGD-VLVFAAKKARVD 478 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ L + G R+ LH D D RME ++ + G + VLV ++ GLD+ + V Sbjct: 479 EIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDVAARGLDIKSIKTVVN 538 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + I IGR R +G A + A + + Sbjct: 539 FDI-----AKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPN 593 Query: 579 NEEHGITPQGLNKKVVD 595 G + D Sbjct: 594 ELMDLAMKDGRFRANRD 610 >UniRef50_UPI00019259AA PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 n=2 Tax=Hydra magnipapillata RepID=UPI00019259AA Length = 790 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 62/485 (12%), Positives = 123/485 (25%), Gaps = 42/485 (8%) Query: 150 DP--DLYLKMMLHLTVGMIIDQRAILRRL--AELQYARNDQAFQRGTFRVRGEVIDIF-- 203 P + + + + + +L + A G F ++ + Sbjct: 234 PPFESNFYEDHPDIKALTEPAVKNLREKLGLKVMGADPARPAISFGHFGFDDHLMGVIRS 293 Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 S ++ + + + F H + + Sbjct: 294 SNYSKPTPIQSQAVPVAL-SGRDIIGIARTGSGKTAAFVWPMLVHIMAQPVL---KEGDG 349 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L E +R + + G + P Sbjct: 350 PIALICAPTRELCQQINSECKRFGKCY-NLRVIACYGGGSKWEQTKGLQQGAEIVVCTPG 408 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + A ++ +++ + M+ + + Sbjct: 409 RLIDLIKAKATNLLRVTYLVFDEADRMF-----------------DMGFEPQVRSIANNV 451 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 Q + SAT + D + G + +EV Q + L Sbjct: 452 RPDRQCLLFSATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWL 511 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 VL+ K +E++ L+E G + +H D D ER +++ + + Sbjct: 512 LSHIVEFTSGGSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQ 571 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 F +LV ++ GLD+P + V D R + IGR R G A Sbjct: 572 FLILVATDVAARGLDIPSIKTVINYDV-----ARDITTHTHRIGRTGRAGEKGIAYTLIT 626 Query: 556 KITPSMAKAIGETERRREKQQK-YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 A + ++ + + K N T G Sbjct: 627 PQDTHFAADLVRNLEGANQRVPDELLDLALKNPWFRKTRAKRGRKAANKEFTPRDRPGLG 686 Query: 615 RPIVE 619 P + Sbjct: 687 LPEGK 691 >UniRef50_A0EA02 Chromosome undetermined scaffold_85, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EA02_PARTE Length = 957 Score = 261 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 64/482 (13%), Positives = 141/482 (29%), Gaps = 35/482 (7%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P A++ E+ V + + + H Sbjct: 77 PEFQQPTAIQSEVIP-IVLSGRNALAIAQTGSGKTLAYLLPALVHLEQHAM---IMESPQ 132 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L L + +L + + + S + + G Sbjct: 133 PKLLILVPTRELGVQIYDQLLQLIEFYYGNKKQ--NEKENSPNLTNLKIVCIYGGNPNKK 190 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + + ++V I I M ++ L E L + + Sbjct: 191 QQVELIQKGIHVIVATPGRLIELIDEGMVNLNKITMLILDEADRMLDMGFEPQVRDIVST 250 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEI 439 QTI +SAT N + S D ++ G + I ++ L++ + Sbjct: 251 IREDRQTILLSATWPNEVQQLSKEFCYDPILVKIGKGAPITQKIICTGQKEKLHVLMNVL 310 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +VL+ TK+ EDL++ L + G LH D +R I++ + + Sbjct: 311 DDLIYTD-KVLIFAETKKRCEDLSQSLTKQGYFCISLHGDKSQDQRDAIMKQFKDSNTRL 369 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD--K 556 + ++ GLD+ ++++V D +S I IGR R +G++ K Sbjct: 370 ICATDIASRGLDVKDITVVVNYDFP-----KSFDDYIHRIGRTGRAGAHGRSFSLLSYEK 424 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 +A + ++ K + Q + ++ Sbjct: 425 DEGILADQVITYLNSCNQEVNQELLEFKD-----KALKVKQERQQRKLQQYIDNSNQTGI 479 Query: 617 IVEP-----------DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + QQ I++ + ++ E + + ++ Q Sbjct: 480 PNSIYPPNNFCQTSENKQENSNQWEGRQQYINQGSNQKKPYHKHSRSEYNEEYKGEIQQY 539 Query: 666 RE 667 ++ Sbjct: 540 QQ 541 >UniRef50_C6C1F3 DEAD/DEAH box helicase domain protein n=2 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1F3_DESAD Length = 493 Score = 261 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 59/442 (13%), Positives = 124/442 (28%), Gaps = 29/442 (6%) Query: 217 FDEEVE-RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 FD + + T + T + + + + R Sbjct: 8 FDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQRLLEKK 67 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + T+ ++E G+E R + G P + + Sbjct: 68 FSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAA--RRSSV 125 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V + + + + D+ L E L K Q + SA Sbjct: 126 IVACPGRLLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQNLLFSA 185 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDP--IIEVRPVATQVDDLLSEIRQ--RAAINERVL 450 T + + + + P +E + + + + +L Sbjct: 186 TMPDDIRDLADKILYRPATVQVANTAPAKTVEHVFYPVSQHLKNNLLFKVLEQTDYDSLL 245 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T TK A++L L G + +L ++ +R + R G F V+V ++ G+ Sbjct: 246 VFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVATDIAARGI 305 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D ++ V LD + + IGR R G A + + + + I + Sbjct: 306 DCDRITHVVNLDVP-----DTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIEKAV 360 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + ++ + D N AK G +P + Sbjct: 361 GYSIE---------------HRTLEDFDYDKPNTHPAPAKRGGGRKPAADRKPAGERRPG 405 Query: 630 KALQQKIHELEGLMMQHAQNLE 651 + + + A + Sbjct: 406 RGRKPAEARDGDESRKPAGERK 427 >UniRef50_D2MPZ3 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Bulleidia extructa W1219 RepID=D2MPZ3_9FIRM Length = 425 Score = 261 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 59/454 (12%), Positives = 127/454 (27%), Gaps = 42/454 (9%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +R ++D S ++ + S F + Sbjct: 5 EFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILNSL- 63 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L E ++ R G + + + Sbjct: 64 ------SKEKNHSIRALILTPTRELATQI-FENIKMFGRYMHLRACCVYGGSPAAPQLKA 116 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L DYL + + + + + L Sbjct: 117 IRSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADR-----------------MLDM 159 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPII 423 K + T SAT E + + + +D + Sbjct: 160 GFIADVRKIVQQIPNDRITALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYL 219 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 +++ L++ + ++ +V T TK A+ L +YL+E +H D Sbjct: 220 IYTEKSSKKKVLVNLLNTE--SIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQG 277 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R+ ++ R + +L+ ++ G+D+ ++S V D + + IGR Sbjct: 278 QRLNALQRFRTNQIRILIATDVAARGIDIKDISHVINFDLP-----EDIENYVHRIGRTG 332 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R G +I K ++ I + + ++ + + K + + Sbjct: 333 RAKQEGVSISLVCKEELNLLANIESYIQFQIPLKQNLYSLPLERKKKRKSSIHKTTRKKE 392 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + K K +SPK+ Q++ Sbjct: 393 RFSNQKKRSKKKSFHEGLIP-QKGISPKSKQKRK 425 >UniRef50_B2KCT2 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCT2_ELUMP Length = 502 Score = 261 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 68/455 (14%), Positives = 130/455 (28%), Gaps = 48/455 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + +E F I H V + Sbjct: 24 FTTPTPVQAQTIPLAIEG-HDVLASAQTGSGKTCAFGIPVIEHLVQNKSNN--------- 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L LT+ G ++ + R P L Sbjct: 74 ALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALKKRPRCIIGTPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + L + ++ M N+ + Sbjct: 134 NDMINRGELDLSKTKVAVWDEMDRMLDIG-----------------FINQIESIMAKLPV 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSE 438 Q + SAT ++ + +V + + I + + L+S Sbjct: 177 KRQMMMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFETLVSL 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R A L+ T+ E L ++L + + +H +R I+D R +FD Sbjct: 237 LR---AKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFD 293 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ GLD+P + LV D I IGR AR G AI + Sbjct: 294 ILVATDVAARGLDIPHIQLVINYDLPL-----RAEDYIHRIGRTARAGAKGLAISFVTPN 348 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + I + + ++ Q+ K+ ++ + K K + Sbjct: 349 DKHLWNDIQKFLKGQDVVQRPIGRAHKE----QKQNFASKKRENKKSQNQKKDFKKKKVN 404 Query: 618 VEPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLE 651 EP P+ + K + +I ++E + + Sbjct: 405 AEPKKEPLTFAEKRREARIKTKIENKNQKITSKEK 439 >UniRef50_A6KZW9 ATP-dependent RNA helicase n=51 Tax=Bacteria RepID=A6KZW9_BACV8 Length = 624 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 54/478 (11%), Positives = 127/478 (26%), Gaps = 47/478 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + + ++ E+ + + L F + + Sbjct: 22 YENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLPLIQKV--------DVKHRAPQ 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + ++ + G + P L Sbjct: 74 ALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIESQIRMLKTGVHIIVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + V + + M + E Sbjct: 134 IDLIERKVAKLETITDVVMDEADEMLN-----------------MGFTDSINAILEKVPE 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQR 442 T+ SAT + + D G + + D + +++ Sbjct: 177 DRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALKRI 236 Query: 443 AAINERV--LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A ++ ++ T++ +++ + L + G LH ++ +R +++ R +L Sbjct: 237 ADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQLL 296 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+ +++ V G S GR R G +I + Sbjct: 297 VATDVAARGLDVNDLTHVINY-----GLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + I ++ G P G ++ L +I K K + Sbjct: 352 GKMREIERIINKKF-------IMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPG 404 Query: 620 PDNVPMDMSPKALQQKIHELE----GLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 +S + L +++ +E +A +E R + ++ Sbjct: 405 IYRKLEWLSKEDLIKRVVSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHGSA 462 >UniRef50_C0Q9A4 DeaD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9A4_DESAH Length = 616 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 66/397 (16%), Positives = 116/397 (29%), Gaps = 18/397 (4%) Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 P S+ + L ++ L T + I + + Sbjct: 11 CNEPGFSESGFSEMGLIKPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGK- 69 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 A ++ + + T+ + E + G+ Sbjct: 70 ---TAAFALPLLSRIDIKLKKPQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQ 126 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + L ++V + + + + + E L + Sbjct: 127 AYAGQLNQLKRGVHVIVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWI 186 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPVATQVDDL 435 E Q SAT + + + D + T D I R + Sbjct: 187 LEQTPPGRQVALFSATMPAPIKKIAIKYLTDPKDVFIRLRTATAD-TIRQRFWMVKGTHK 245 Query: 436 LSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + + A + ++V TK +L E LE G L+ DI R I + Sbjct: 246 LDALTRILEAETFDAIIVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFK 305 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ D+LV ++ GLD+ VS V D S + IGR R G AIL Sbjct: 306 KGKIDILVATDVAARGLDVERVSHVINYDIPN-----GAESYVHRIGRTGRAGRAGDAIL 360 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + M K I +T R++ + K I + + Sbjct: 361 FVSPRERWMLKVIEKTTRQQIEMMKLPSTEAINDKRI 397 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 110/379 (29%), Gaps = 20/379 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F T IP+ + + + + + L + + Sbjct: 23 FTEATPIQEQAIPKMILGL--DLIGQAQTGTGKTFAFGIPMVEKTDTSLRQ----TQGLI 76 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + ++ GE F L ++V I Sbjct: 77 LTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELDRKPHIIVATPGRIIDH 136 Query: 347 IGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 I TL E L + + + QT+ SAT + + + Sbjct: 137 IDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQTVLFSATMPAFIKKIAK 196 Query: 406 GDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + + + + LL + ++ TK A Sbjct: 197 NYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDF-ENPSTAIIFVNTKAGA 255 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + +TE L++ G LH D+ +R ++ R + +LV ++ GLD+ +V ++ Sbjct: 256 DRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATDVAARGLDVDDVEIIV 315 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + + + IGR R GKA + + M + + K+ + Sbjct: 316 NYDLP-----QQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHYTKADIKRLEV 370 Query: 579 NEEHGITPQGLNKKVVDIL 597 + + L I Sbjct: 371 PTADDVYKEQLKTFKHKIK 389 >UniRef50_C4R557 RNA helicase in the DEAD-box family, necessary for prespliceosome formation n=1 Tax=Pichia pastoris GS115 RepID=C4R557_PICPG Length = 784 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 54/450 (12%), Positives = 123/450 (27%), Gaps = 45/450 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E + + F + ++ + Sbjct: 235 YEAPTPIQSEALPN-LMSGKDLIGIAKTGSGKTLAFLLPMFRQIISQPDP---------- 283 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E+ + LT + L++ E + + G Sbjct: 284 ----------ESGEGPIGVILTPTRELALQIFKECKPFMK--SLNLKGICVYGGASISQQ 331 Query: 326 FDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + V I + G + R L E + + +K Sbjct: 332 ISDIKKRVHFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIP 391 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 QT+ SAT + + + + G + + V + Sbjct: 392 NTRPDRQTLVFSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSK 451 Query: 435 LLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LL + + + +VLV + A+ L L + G + LH + ++R II+D Sbjct: 452 LLELLGTFKSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDF 511 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G D+LV ++ GLD+ ++LV D+ + +GR R + G+A+ Sbjct: 512 KTGNSDILVATSVAARGLDVKRLNLVINYDSPNH-----MEDYVHRVGRTGRAGSTGEAV 566 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + A + + ++ ++ + + + + + Sbjct: 567 TFLTAKDYRAAYDVSRALKVSKQLVP---DNVQAVANVFIEQLKTGSAKRGSGYGGKGLE 623 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + E Sbjct: 624 KLQEERELKRQLEKTTYGDEVATADPKKEN 653 >UniRef50_C6BZ63 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZ63_DESAD Length = 521 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 56/405 (13%), Positives = 120/405 (29%), Gaps = 19/405 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVS-TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + L D +E L + + + V + + Sbjct: 7 LGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLP---IIE 63 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + E ++ LT + +++ +E+ G + F++ G+P L Sbjct: 64 NVREGAGHVQAIVLTPTRELAMQVADEIISFRG--SRKVFVATVYGGQPMLPQLKALKRG 121 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + I + L E + E +T+ Sbjct: 122 ADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAGEDRRTLL 181 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN-- 446 SAT + + + D V P+ E+ D + + Sbjct: 182 FSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCRVVDAQPE 241 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 LV T+ A+ + L E G +H D+ R +I+ R +LV ++ Sbjct: 242 FYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKILVATDVA 301 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+P++S V + +S + +GR R G A+ + I Sbjct: 302 ARGIDVPDLSHVVN-----FALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLRYI 356 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDI-LALGQNIAKTKAK 609 + + R ++ + ++ ++ + + Sbjct: 357 TKITKLRVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLD 401 >UniRef50_Q6AMK6 Probable ATP-dependent RNA helicase n=1 Tax=Desulfotalea psychrophila RepID=Q6AMK6_DESPS Length = 632 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 54/375 (14%), Positives = 106/375 (28%), Gaps = 17/375 (4%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + V L + + + + + ++ + Sbjct: 65 DLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGK----TAAFGLPLLNNIDFS 120 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K + + T+ + + + ++ R + G L +VV Sbjct: 121 KKCVQALVLAPTRELAQQVGDALATYSGDD-GRNVLVVYGGSSYQAQVGGLRRGARVVVG 179 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I + D+ + L E L + QT+ SAT Sbjct: 180 TPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLS 239 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ--RAAINERVLVT 452 + + + + I IE R D ++ I + E L+ Sbjct: 240 SRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVESALIF 299 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ +L L G L D+ R ++ + G+ VLV ++ GLD+ Sbjct: 300 ARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAARGLDI 359 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 ++S V D + IGR R G AI M + I + + Sbjct: 360 DDISHVFNYDLP-----EDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGK 414 Query: 572 REKQQKYNEEHGITP 586 + + + I Sbjct: 415 KLIKGELPTVEQIEE 429 >UniRef50_A5FH88 DEAD/DEAH box helicase domain protein n=21 Tax=Bacteroidetes RepID=A5FH88_FLAJ1 Length = 634 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 114/410 (27%), Gaps = 22/410 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 S + I T + Q ++ + + + T+ Sbjct: 25 PSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFPLIQKIDADNRNTQALVLSPTRELC 84 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRG 353 + + G + ++V I + Sbjct: 85 LQITNELKNYSKYEKGINVVAVYGGASITEQAREIKRGAQIIVATPGRMQDMINRGLVNI 144 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 L E L + T SAT + + + V Sbjct: 145 KNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLFSATMPQEVARIAKQFMSEPVE 204 Query: 414 RPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAINERVL--VTTLTKRMAEDLTEYLEE 468 G + + D +++ A N + V TKR + + E L E Sbjct: 205 ITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDIFSVVFCRTKRDTQAVAEKLIE 264 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G LH D+ +R +++ R + +LV ++ G+D+ V+ V Sbjct: 265 DGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGIDVDNVTHVVNYQLP---- 320 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + GR R G +I+ K +I +++ E P Sbjct: 321 -DEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERIIKQKF-------EEKAIPS 372 Query: 588 GLNKKVVDILALGQNIAKTKAKG-RGKSRPIVEPDNVPMDMSPKALQQKI 636 G+ + +L L I T+ P +NV D+S + L +K+ Sbjct: 373 GIEICEIQLLHLANKIKDTEVDHEIDNYLPA--INNVLEDLSKEELIKKM 420 >UniRef50_A9M0D7 ATP-dependent RNA helicase, putative n=21 Tax=Neisseria RepID=A9M0D7_NEIM0 Length = 457 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 51/432 (11%), Positives = 106/432 (24%), Gaps = 34/432 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + F + Sbjct: 23 YENPTPIQAAAIPKAL-AGHDLLAAAQTGTGKTAAFMLPSLERLKRYATASTSPAMHPVR 81 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + + + G + L Sbjct: 82 MLVLTPTRELADQI-DQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEIVVATVGRL 140 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + V + + L + K + Sbjct: 141 LDHVKQKNIHLNKVEIVVLDEADR-----------------MLDMGFIDDIRKIMQMLPR 183 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + ++ I + + L Sbjct: 184 QRQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERL 243 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I +V+V TK+ + +T L + +H D R+E + + G Sbjct: 244 IVDLHMN--QVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLR 301 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ GLD+ E+ V + + IGR R +G AI D+ Sbjct: 302 VLVATDIAARGLDIAELPFVINYEMP-----AQPEDYVHRIGRTGRAGADGVAISLMDES 356 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 M ++I E + ++ + K + + Sbjct: 357 EQKMFESIKELTGNKLLIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKN 416 Query: 618 VEPDNVPMDMSP 629 P+N D Sbjct: 417 TRPENAANDAGA 428 >UniRef50_A6LUG3 DEAD/DEAH box helicase domain protein n=33 Tax=Firmicutes RepID=A6LUG3_CLOB8 Length = 480 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 62/426 (14%), Positives = 127/426 (29%), Gaps = 30/426 (7%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 DE ++ + V I + + ++ Sbjct: 12 DEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGK----TAAFGIPLCEKVDW 67 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 N+ + + + T+ ++E G + +S EP L +VV Sbjct: 68 NENIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIF-GKEPISEQERKLKQKTHVVV 126 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + I + + + E L + T+ SAT Sbjct: 127 GTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFSATI 186 Query: 397 GNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + V +D + +++ L + E V Sbjct: 187 PEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEK--PETV 244 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TK + + ++L+ G V +H + ER+ I+ RLG+F +LV +L G Sbjct: 245 VIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASRG 304 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 +D+ ++ V D + + + IGR R GKAI + + I E Sbjct: 305 IDVKGITHVINYDLPV-----EKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEF 359 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 + E V + G K+K K + + + + + ++ Sbjct: 360 IGFKIPVYNLPE---------KIMVEKEKSEGIKTLKSKPKRKEEKSKTINNNITKIYLN 410 Query: 629 PKALQQ 634 ++ Sbjct: 411 GGKKKK 416 >UniRef50_B9N3Z4 Predicted protein n=9 Tax=Spermatophyta RepID=B9N3Z4_POPTR Length = 775 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 62/417 (14%), Positives = 117/417 (28%), Gaps = 36/417 (8%) Query: 201 DIFPAESDDIALRVELFDEE-VERLSLFDPLTGQIVSTIPRFTIYP----------KTHY 249 D+ A S+ DE V +L L L + + Sbjct: 114 DVDYASSETEPSSNTSEDELDVSKLGLPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDL 173 Query: 250 VTPRERIVQAMEEIKEELAARRK------VLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + + R L + + T+ + + + Sbjct: 174 IARAKTGTGKTLAFGIPIIKRLTEDAELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKE 233 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLV 362 S G T L +VV I + + L Sbjct: 234 SAPY---LSSVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLD 290 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP 421 E L + E Q++ SAT + + + + + + G + Sbjct: 291 EADQMLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEE 350 Query: 422 -------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + + A +LS++ A + ++ T TKR A++++ L Sbjct: 351 KLAEGIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNT-IASE 409 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH DI +R + R G+F VLV ++ GLD+P V L+ + + Sbjct: 410 ALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPN-----DAET 464 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + GR R G AIL +++ + + + Sbjct: 465 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAE 521 >UniRef50_Q012E3 DEAD-box protein abstrakt (ISS) n=1 Tax=Ostreococcus tauri RepID=Q012E3_OSTTA Length = 1030 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 51/412 (12%), Positives = 116/412 (28%), Gaps = 42/412 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 R P ++ + + + + + + H Sbjct: 343 ELIRRCGFEKPMPIQAQALPV--------IMSGRDCIGIAKTGSGKTLAYILPMLRHINA 394 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + L E +R + F+ + G + Sbjct: 395 QEPLKNG---DGPIGMIMGPTRELVTQIGKEAKRYGKALGFNAVSV-YGGSGIAAQIGEL 450 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D L G G + R L E Sbjct: 451 KRGAEIVACTPGRMIDILTTGG--------------GKITNLRRVTYIVLDEADRMFDMG 496 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIE 424 + + + QT+ SAT + + + + V G +D ++E Sbjct: 497 FEPQITRILANLRPDRQTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVVE 556 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 +RP + +L + + ++++ ++ A+ + L + G LH + + Sbjct: 557 IRPEEDRFLRVLELLGEWCERG-KIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSD 615 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R I D + ++LV ++ GLD+ ++ LV D + +GR R Sbjct: 616 RHSTISDFKSDVCNILVATSVAARGLDVKDLRLVINYDTPNH-----LEDYVHRVGRTGR 670 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G A+ + + A + + + ++ + +K + Sbjct: 671 AGQKGTAVTFISEDEEKFAPDLVKALKDSKQTVPR--DVQRLADEFTRKRKE 720 >UniRef50_A5UZK3 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=A5UZK3_ROSS1 Length = 467 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 53/463 (11%), Positives = 113/463 (24%), Gaps = 40/463 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ ++ + F + + Sbjct: 21 YHTPTPIQEQVIPHALDG-RDVIGIAQTGTGKTAAFVLPILQRLMRGPRGR-------VR 72 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L + L + T + G + P L Sbjct: 73 AMIVTPTRELAEQIQGVIEALGKYTG-LRSVTLYGGVGYQGQIQRLRRGVEIAVVCPGRL 131 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L L + + + + M+ + Sbjct: 132 LDHLERGTLTLEHLDMLILDEADQMFD-----------------MGFLPDVRRILRLAPA 174 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP--IIEVRPVATQVDDLLSEIRQRA 443 QT+ SAT + + + + G P + + + + Sbjct: 175 QRQTMLFSATMPDAIRALAREALREPQTIQIGRSAPVSTVTHAIYPVAEHLKTALLIELL 234 Query: 444 A--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 VL+ T TK A+ L++ L G R L ++ R + R G + +LV Sbjct: 235 RHTDTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILV 294 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ +S V D ++ + IGR R G A + Sbjct: 295 ATDIAARGIDVAHISHVINYDMP-----QTAEAYTHRIGRTGRAARTGDAFTLVTRSDTG 349 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN--IAKTKAKGRGKSRPIV 618 M +AI K++ + D + Sbjct: 350 MVRAIERLIGEPLKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAP 409 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + S + +++ A N + + Sbjct: 410 RRHDAQERRS--DTAPRRRDVQEWRSDAAPNRHKPRSRDTSAR 450 >UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomycota RepID=DBP3_YEAST Length = 523 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 60/434 (13%), Positives = 129/434 (29%), Gaps = 61/434 (14%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + + F + +H + +++ + L Sbjct: 134 KPTPIQAVAWPYLL-SGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRG------IQVL 186 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + LT + ++ G E + + P L D Sbjct: 187 VISPTRELASQIYDNLIVLTDKVG--MQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLD 244 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-LA 386 L + + +++ + + L + Sbjct: 245 LLQEGSVDLSQVNYLVLDEA-----------------DRMLEKGFEEDIKNIIRETDASK 287 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDDLLS 437 QT+ +AT E + + + + G D I+EV + LL Sbjct: 288 RQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLE 347 Query: 438 EIRQRA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ NE+VL+ L K+ A + L+ +G V +H D+ +R + + + + Sbjct: 348 LLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKS 407 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G+ ++L+ ++ GLD+P V V L + + IGR R G A Sbjct: 408 GKSNLLLATDVAARGLDIPNVKTVINLTFPL-----TVEDYVHRIGRTGRAGQTGTAHTL 462 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + +A + + D++ G + K + G Sbjct: 463 FTEQEKHLAGGLVNVLNGANQPVP----------------EDLIKFGTHTKKKEHSAYGS 506 Query: 614 SRPIVEPDNVPMDM 627 V+ P + Sbjct: 507 FFKDVDLTKKPKKI 520 >UniRef50_A5K9H3 Pre-mRNA splicing factor RNA helicase PRP28, putative n=2 Tax=Eukaryota RepID=A5K9H3_PLAVI Length = 1006 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 106/387 (27%), Gaps = 25/387 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ +E + + F + + + ++ Sbjct: 601 YEKPTPIQMQAIPIALE-MRDLIGIAETGSGKTAAFVLPMLAYVKQLPPLTYETSQDGPY 659 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + + G + + + P + Sbjct: 660 ALIIAPSRELAIQIFDETNKFASYCS-CRTVAVVGGRNAEAQAFELRKGVEIIIGTPGRI 718 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE-- 383 D L ++ ++V + + M + + + E Sbjct: 719 HDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTTNLKSEDDALALQEEMM 778 Query: 384 -----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQ 431 L T SAT S + G ++ +E + Sbjct: 779 AKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFT-TEGK 837 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L EI + ++V K++A+ + + + + R LH R + + Sbjct: 838 KKQKLQEILEEYEAP--IIVFVNQKKVADIIAKSISKMKFRAVALHGGKAQELREQTLNS 895 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 + G+FD+LV ++ G+D+ V LV D + S IGR R G A Sbjct: 896 FKNGDFDILVATDVAGRGIDVQGVKLVINFDMP-----KDIESYTHRIGRTGRAGMKGMA 950 Query: 551 ILYGDKITPSMAKAIGETERRREKQQK 577 I + + + + + Sbjct: 951 ISFVTEQDSHLFYDLKQFLISSNNIVP 977 >UniRef50_UPI0001C33831 DNA/RNA helicase, superfamily II n=3 Tax=Cyanobacteria RepID=UPI0001C33831 Length = 477 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 62/380 (16%), Positives = 110/380 (28%), Gaps = 20/380 (5%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 V +L + + + Q + ++ Sbjct: 15 VNKLKELGFENPTEIQEKAIPLMLEGHDVL----GQSQTGTGKTAAYSLPILEKVDIQDP 70 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + T+ + + E + ++ G+ L +VV Sbjct: 71 SVQVLILTPTRELAQQVAEALKDFTV-RRRLYILTVYGGQSIDRQIRSLERGVQIVVGTP 129 Query: 341 HVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 I I D R L E L + + + T SAT Sbjct: 130 GRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACFSATMPRE 189 Query: 400 ELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 E + V ++ I + P L + E ++ Sbjct: 190 IRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVL-EIEDPESAIIF 248 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK+ A DLT L+E G V H ++ +R ++ R G ++V ++ GLD+ Sbjct: 249 VRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDIAARGLDV 308 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 +S V D + + I IGR R GKAI + M + I R+ Sbjct: 309 EGLSHVINYDLP-----DNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKLRQ 363 Query: 572 REKQQKYNEEHGITPQGLNK 591 + K + + L K Sbjct: 364 KIDICKIPNRSEVEAKRLGK 383 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 65/393 (16%), Positives = 123/393 (31%), Gaps = 22/393 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L ++ ++ + I + V + R + Sbjct: 6 KLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQ 65 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + T+ + + G R L+ G+ L Sbjct: 66 RGKKAQ-----VLIVTPTRELALQVADEVAKLGKYLKVRALAV-YGGQAIERQIRGLRQG 119 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + I + + L E L + QT+ Sbjct: 120 VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLL 179 Query: 392 VSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + P +++ L+S + Sbjct: 180 FSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSEL- 238 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + +V TK+ +++ E L G + LH D+ ER + I+ + G+ ++LV + Sbjct: 239 -PIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATD 297 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+P+VS V D ++ S I IGR R GKAI + + K Sbjct: 298 VAARGLDIPDVSHVINFDIP-----QNPESYIHRIGRTGRAGREGKAITLINYRERKLLK 352 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 AI E +R K++ E + K I Sbjct: 353 AIEEAINKRLKREILPEPVDLEEARFKKIAKKI 385 >UniRef50_Q9GV12 Vasa-related protein CnVAS2 n=7 Tax=Eumetazoa RepID=Q9GV12_HYDMA Length = 890 Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats. Identities = 56/442 (12%), Positives = 115/442 (26%), Gaps = 45/442 (10%) Query: 155 LKMMLHLTVGMIIDQRAILRRLAEL-QYARNDQAFQRGTFRVRGEVIDIF--PAESDDIA 211 + + I+ EL R + + + Sbjct: 416 ENEIFEIGSNQGINFEKYKHIPIELSGTNRPKPIQSFSEANLHPVCLKNLDLAKYKEPTP 475 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV---TPRERIVQAMEEIKEELA 268 ++ + F + T+ + + Sbjct: 476 IQKYAIP-AILAKRDVMACAQTGSGKTASFLLPIITNLMNEGLDNIDSNIDGVALPLAAI 534 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L E R ++ G + + P L D+ Sbjct: 535 LAPTRELVVQL-FTEARKFSYNSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGRLEDF 593 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-- 386 + + + ++ + + M + EF + Sbjct: 594 IKRGKVNFQNLKYLILDEADKMID-----------------MGFGPQIEHIIEFSGMPPK 636 Query: 387 --PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 T+ SAT + + + D + G + + + + L + Sbjct: 637 GIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLEN 696 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + LV KR A+ L +L + L +D +R +RD R G Sbjct: 697 LLQTSGTD--QTLVFVEKKRDADFLANFLSQKNFPPTILFADRTREKRESALRDFRNGIA 754 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV + GLD+ +V V D + + IGR R GKA + D Sbjct: 755 PILVATAVAARGLDINDVKHVINYDLP-----KDANEYVHRIGRTGRIGNKGKATSFFDL 809 Query: 557 I-TPSMAKAIGETERRREKQQK 577 S+A+++ + E+ Sbjct: 810 DRDGSLARSLVKLLSDAEQDVP 831 >UniRef50_C7PCT4 DEAD/DEAH box helicase domain protein n=20 Tax=Bacteria RepID=C7PCT4_CHIPD Length = 444 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 53/453 (11%), Positives = 116/453 (25%), Gaps = 65/453 (14%) Query: 165 MIIDQRA-ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 D +L + + Y ++ + P + Sbjct: 4 DEFDLDDRVLDGIDAMGYTTATPVQEK-----------VIPP---------------IIA 37 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 F + +T + L L + Sbjct: 38 GKDILACAQTGTGKTAAFLLPILHRLITEPHDARKINS-----LIIVPTRELAVQIA-QT 91 Query: 284 QRLTQRTQFDLEMMNELGYC---SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + G E + P + +L + + Sbjct: 92 LEGMSYFTSVSSIAVYGGSNGALFAAEKKALTSGVDIVICTPGRMIAHLNMGYVKLDAVK 151 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 ++ + + L + ++ Q + SAT + Sbjct: 152 YLVLDEADR-----------------MLDMGFSDDIIRITSTLPKERQNLLFSATMPDKI 194 Query: 401 LEKSGGDVVDQVVRPT---GLLDPIIE--VRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + + + I++ Q L+ ++ R +++ Sbjct: 195 RKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQKTGLIKQLLARKEFGC-IIIFCSR 253 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K+ + LT L++ V +HSD++ +R +++ D + + +LV ++L G+D+ ++ Sbjct: 254 KQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGIDIEDI 313 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 LV D I IGR AR G A + I E + Sbjct: 314 DLVINYDVPN-----DAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVLGKPVT 368 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + G P+ K K Sbjct: 369 KAEVPAALGPVPEYSPKPFRSGGGKRPQGKKRP 401 >UniRef50_A9ENG9 ATP-independent RNA helicase n=18 Tax=Bacteria RepID=A9ENG9_SORC5 Length = 624 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 57/444 (12%), Positives = 117/444 (26%), Gaps = 48/444 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ E + F + I + E Sbjct: 28 YEEPTPIQREAIPHLL-TGRDLLGQAATGTGKTAAFALPLLQRL-----EIGGEPPRLPE 81 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMM-NELGYCSGIENYSRFLSGRGPGEPPPT 324 L L R + ++++ G G + + P Sbjct: 82 ALVLVPTRELAMQVAEAMHRY--GRRLGVQVLSVYGGQPFGQQLRALRRGVHVVVATPGR 139 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D++ L + V + + M + Sbjct: 140 TLDHIGRGTLALDGIRTVVLDEADEMLD-----------------MGFAEALEEILSATP 182 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT----------GLLDPIIEVRPVATQVDD 434 A QT+ SAT +G + + V + + P A + Sbjct: 183 GARQTVLFSATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAA 242 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + ++ T+ ++LTE L G + LH R ++ R Sbjct: 243 LTRVL--DMEDPSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRA 300 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G ++LV ++ GLD+ VS V D + + IGR R G AI Sbjct: 301 GTAELLVATDVAARGLDIEHVSHVINYDVPC-----APEVYVHRIGRTGRAGREGAAITL 355 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL----GQNIAKTKAK 609 + + + + +R + + + L + G + + Sbjct: 356 VEPREHYLIRNVERLTGQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVE 415 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQ 633 G +++ + ++ A + Sbjct: 416 GLADEFDVMDIAAAAVKLAHDATE 439 >UniRef50_D1U888 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U888_9DELT Length = 551 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 52/377 (13%), Positives = 106/377 (28%), Gaps = 13/377 (3%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L+ + + I TI Q N Sbjct: 12 ETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPIIETAVENAKR 71 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + + + R L G+ L + +VV Sbjct: 72 VQALVLTPTRELAIQVADEINSLKGKKRIRVL-PVYGGQAIHMQLKALKSGVDVVVGTPG 130 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + D L E + + + +T+ SAT + Sbjct: 131 RIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSATMPHEV 190 Query: 401 LEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 + + + D + P+ + D + + + LV T T Sbjct: 191 MRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCRVVDAEPDFYGLVFTRT 250 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + A+ + L E G +H D+ R EI+ + +LV ++ G+D+P++ Sbjct: 251 RADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARGIDVPDL 310 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 + V + ++ + GR R G AI I ++ Sbjct: 311 THVVN-----FALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSSGIDIT 365 Query: 575 QQKYNEEHGITPQGLNK 591 + K H + ++ Sbjct: 366 KAKLPCIHDVIYSKKSR 382 >UniRef50_Q8D2Y1 DeaD protein n=2 Tax=Enterobacteriaceae RepID=Q8D2Y1_WIGBR Length = 583 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 64/478 (13%), Positives = 136/478 (28%), Gaps = 67/478 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL L +L Y + P + I + + Sbjct: 15 DFILLALNDLGYKKPS------------------PIQEKCIPF--------LLKGYDVLG 48 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F + + ++ + + L L++ Sbjct: 49 IAQTGSGKTAAFFLPLLNNIDL--------KLKLPQIIILTPTRELALQIKFACCSLSKY 100 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + G I+ S + + P + D L L + + + + + Sbjct: 101 IKEINIIALYGGQNYSIQIKSLKRNPQIVVGTPGRILDLLNKKYLNLSEITSFVLDEADE 160 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + QTI SAT + + Sbjct: 161 ML-----------------RMGFIEDVENIFLKSSKQHQTILFSATMPAAIHRITKRFMK 203 Query: 410 DQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + +++ LL + I + V++ TK ++ Sbjct: 204 KPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFL--EVEIFDAVIIFVRTKNATLEV 261 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 ++ LE++G L+ D++ + R + + + G D+LV ++ GLD+ +SLV D Sbjct: 262 SDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVAARGLDVDRISLVINYD 321 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 S I IGR R GKA+++ + + I + + Q K Sbjct: 322 IPL-----DVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIKEKLSQIKLPSV 376 Query: 582 HGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + + LN I + K + +V + + + ++ Sbjct: 377 ELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIISFIGISDVKIISAALLKVAQKNK 434 >UniRef50_B1V958 DEAD/DEAH box helicase-like n=4 Tax=Candidatus Phytoplasma RepID=B1V958_PHYAS Length = 564 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 48/406 (11%), Positives = 117/406 (28%), Gaps = 44/406 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + E ++ F I + Sbjct: 23 FIEATPIQALVIPEIIQG-HDVIGQAQTGTGKTFAFGIPIIEKI--------DYKLSKTQ 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++L + + G + + P + Sbjct: 74 SLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFRALESKPHLIIATPGRV 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + + +T+ + M + + Sbjct: 134 IDHIERGKIDLSALKILTLDEADEMLK-----------------MGFQEALETILKQIPE 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVD-------QVVRPTGLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + ++ + + L+ Sbjct: 177 ERQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRL 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + ++ TK+ +++T +L++ G +H D+ +R ++ + R G+ Sbjct: 237 L--DLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIK 294 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +L+ ++ G+D+ ++ +V D E + IGR R G A + Sbjct: 295 ILIATDVAARGIDISDIKMVVNYDLPHED-----EVYVHRIGRTGRAGKKGLAYSFISPR 349 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITP---QGLNKKVVDILALG 600 S K + + + K + I + +KV+DI+ Sbjct: 350 KFSQLKKLEYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKN 395 >UniRef50_Q2BDP3 ATP-dependent RNA helicase n=2 Tax=Bacillus RepID=Q2BDP3_9BACI Length = 543 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 62/463 (13%), Positives = 130/463 (28%), Gaps = 42/463 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + A++ + +E F + + Sbjct: 43 DEPTAVQEKAIPIVLEG-RDIIAQAQTGTGKTLAFILPILEKI--------DPSNGSTQA 93 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L E ++L + + G + + + P L Sbjct: 94 LIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQTQIVVATPGRLL 153 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L + + + S + + + M + L + Sbjct: 154 DHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMEL-----------------IISQTPAS 196 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + S + + ++ + + + L+S I Sbjct: 197 RQTMLFSATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRI 256 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R+ ++ T R A L + L+ LH D+ +R ++++ R E Sbjct: 257 RE--DRPFLAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQF 314 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ ++ GLD+ V+ V D + S + IGR R G A+ + + Sbjct: 315 LIATDVAARGLDVEGVTHVYNYDIP-----QDSESYVHRIGRTGRAGKDGLAVTFYAEKD 369 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + KAI + R +++ T G D ++ +A G R Sbjct: 370 EAALKAIEQELNIRLPKEESTATANTTADGEKSSSGD-KPKNRSDRDRRAGGAESRRRTG 428 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 ++ + + A R + Sbjct: 429 GRTEGRGSREVRSTRSGERRNRSSEGRRADGEIRSYTHDERRE 471 >UniRef50_A0RP33 Putative ATP-dependent RNA helicase RhlE n=2 Tax=Campylobacter fetus RepID=A0RP33_CAMFF Length = 624 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 61/434 (14%), Positives = 124/434 (28%), Gaps = 25/434 (5%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 +L +E L + + + I + + + Sbjct: 7 DLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKLSSK 66 Query: 275 LENNKLLEE-QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 N K + + T+ + + + + L G L + Sbjct: 67 ERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSY-PQIQALKSGI 125 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + E + + + Q + Sbjct: 126 DIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQR--AAINE 447 SAT + + + D + + I R + D + + + + Sbjct: 186 SATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGVESID 245 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + LV T TKR A+ + YL G V LH D R + + + G+ +LV ++ Sbjct: 246 QALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVATDIAA 305 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ E+ V L+ + IGR R N G AI I Sbjct: 306 RGLDIKELPFVINLELPNV-----PEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE 360 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVV---DILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ ++ + G + + GQN+ K+ + I + + Sbjct: 361 KLIDKKLIRESF--------SGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERK 412 Query: 624 PMDMSPKALQQKIH 637 P + + + Sbjct: 413 PREFNSDKKDESKR 426 >UniRef50_A9BJS7 DEAD/DEAH box helicase domain protein n=2 Tax=cellular organisms RepID=A9BJS7_PETMO Length = 530 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 68/462 (14%), Positives = 130/462 (28%), Gaps = 36/462 (7%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK-THYVTPRERIVQAMEEIKEELAARR 271 ++ L D + + + + + + + L Sbjct: 6 QMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE-- 63 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L E ++ LT + L++ NE+ G N L G L Sbjct: 64 -RLDEKANDVQALVLTPTRELALQVCNEIDSLKG--NKRLNLLPVYGGVSIGNQIRALKR 120 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 LVV I + + + + E L Q + Sbjct: 121 RVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQIL 180 Query: 391 YVSATPGNYELEKSGGDVVDQVV----------RPTGLLDPIIEVRPVATQVDDLLSEIR 440 SAT + + + + I + + +++ L I Sbjct: 181 MFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLI- 239 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 N LV T TK +E++ L + G L+ D+ +R I+ + +L Sbjct: 240 -DIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKIL 298 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + ++ G+D+ + V ++ + I IGR AR N G AI + Sbjct: 299 ISTDVAARGIDIDNLKYVINYSLP-----QNPENYIHRIGRTARAGNEGTAITFVTPTEY 353 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-------ALGQNIAKTKAKGRG 612 I + + ++ K + I + K +I I Sbjct: 354 RRFMFIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEET 413 Query: 613 KSRPIVEPDNVPMDMSPKALQQ----KIHELEGLMMQHAQNL 650 P ++ L++ KI E++ Q L Sbjct: 414 DQEPSQIIASILKYFYGGILKEENYNKIKEVKNSSKSKDQRL 455 >UniRef50_C1N3K2 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N3K2_9CHLO Length = 663 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 59/407 (14%), Positives = 110/407 (27%), Gaps = 48/407 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER---IVQAMEE 262 + ++ ++ + F + T Sbjct: 161 YASPTPIQAHAIPIALDAKNDLMCCAQTGSGKTCGFLLPVIAKLGTGATTTPEGAAERAA 220 Query: 263 IKEELAARRKVLLENNKLLEEQRLT------QRTQFDLEMMNELGYCSGIENYSRFLSGR 316 L L +E +RL ++ G + + L Sbjct: 221 TPAALVMAPTRELAIQIHVEARRLAFDPAAMTSATALRAVVVYGGADAKAQLRELALGVD 280 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P L D++ + + H+ + + M L + + Sbjct: 281 VLVATPGRLTDFVDRGVVSLARVKHLILDEADRM-----------------LDMGFEPQI 323 Query: 377 LKFEEF----EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA--- 429 K A QT+ SAT + + + + D G + + Sbjct: 324 RKIVLQRDMPPKHARQTLMFSATFPDSIQKLAREFLRDYTWIGVGRVGSTVNAIAQHFEL 383 Query: 430 --TQVDDLLSEIRQRAAINER---VLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTV 483 L + A LV KR A + L ++HG R +H D Sbjct: 384 ATCDKRHKLDLLIAALAKAPPPALTLVFVQKKRTAAWVAGQLSKQHGVRAESIHGDRTQS 443 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + G+ V+V ++ G+D+P V+ V D S + IGR Sbjct: 444 QREAALASFKSGKAPVMVATDVAARGIDVPGVAHVVNFDLPT--AADDFDSYVHRIGRTG 501 Query: 544 RNVN-GKAILYGDK------ITPSMAKAIGETERRREKQQKYNEEHG 583 R G A + +A I R ++K+ +G Sbjct: 502 RAGREGMATSFFVPGFDPKTGNGKIASQIATLLREQKKEAPAFIANG 548 >UniRef50_Q6A841 Putative ATP-dependent RNA helicase n=2 Tax=Propionibacterium acnes RepID=Q6A841_PROAC Length = 561 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 57/442 (12%), Positives = 128/442 (28%), Gaps = 34/442 (7%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK------ 272 + + L ++ + + T + + R Sbjct: 63 DICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEG 122 Query: 273 -VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L + + + L++ + + + G + D L A Sbjct: 123 WEELTTKGKPQALVMCPTRELALQVSKD--ISTAASVRGARVLTVYGGVGYESQIDALKA 180 Query: 332 DGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + R L E L + QT+ Sbjct: 181 GVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTM 240 Query: 391 YVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQ 441 SAT + + + V + +++ + ++ Sbjct: 241 LFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQ- 299 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A E+V++ TKR + L++ L++ G + R +H D+ V R + ++ R G+ +LV Sbjct: 300 -ANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILV 358 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ VS V + E++ + IGR R G A+ D + Sbjct: 359 ATDVAARGIDVTGVSHVINHECP-----EDEKTYVHRIGRTGRAGAKGVAVTLVDWADVT 413 Query: 561 MAKAIGETERRREKQQ-------KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 K I + + + P+ +++D+ + + + Sbjct: 414 RWKLINKALNLELSEPVETYSTSPHLYTDLDIPEDAQGQIIDLEKAASEKKRRQHRHGHD 473 Query: 614 SRPIVEPDNVPMDMSPKALQQK 635 + + K + Sbjct: 474 GSHHEKATRRRSRDASKDGDKA 495 >UniRef50_Q0B215 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=Q0B215_BURCM Length = 511 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 59/459 (12%), Positives = 114/459 (24%), Gaps = 69/459 (15%) Query: 138 VVASVSAIYGLGDPDLYLKMMLHLTVGMIID------QRAILRRLAELQYARNDQAFQRG 191 V+A A+ + L + +LR L +L Y Sbjct: 7 VIALAFALNRK-PVSAPTARIAVLARNTSMSFASLGLIDPLLRNLQDLNYQT-------- 57 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 ++V+ V F + V Sbjct: 58 -----------------PTPVQVKAIP-AVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQ 99 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + L L +L+ + + G + Sbjct: 100 QGPAVSSNRA---RVLVLVPTRELAEQ-VLQSFVAYGKGLDLRFLAAYGGVSINPQMMKL 155 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D + + + + + M L Sbjct: 156 RKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRM-----------------LDLG 198 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIE 424 + QT+ SAT + + + V + + Sbjct: 199 FARELNAVFAALPVQRQTLLFSATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVV 258 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + D + + + + LV T+ E L L+E G V +H D Sbjct: 259 TVDKRNKPDLFMHLVAE--NNWDHALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPA 316 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R+ + + GE +LV ++ GLD+ ++ LV +D + + IGR R Sbjct: 317 RLRALERFKTGEVQMLVATDVAARGLDIDDLPLVINVDLPIV-----AQDYVHRIGRTGR 371 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 +G A+ AI + ++++ Sbjct: 372 AGASGVAVSLVCADEAPQLAAIEALIGQTLRREEEPGFE 410 >UniRef50_C5S7U5 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S7U5_CHRVI Length = 662 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 58/429 (13%), Positives = 123/429 (28%), Gaps = 28/429 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + + + + + + + A Sbjct: 14 LGLSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGK----TAAFALPMLS 69 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + + + T+ + E + + G+ L + Sbjct: 70 RLDPDLRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNP 129 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V + I D R L E L + Q Sbjct: 130 QVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALF 189 Query: 393 SATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + +VD V ++ + ++D L + Sbjct: 190 SATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIM--ELEP 247 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +L+ TK +L + L+ HG L+ D++ R + L+ G+ DVLV ++ Sbjct: 248 FDGLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDV 307 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ +S V D + + IGR R G+AIL + + K+ Sbjct: 308 AARGLDVERISHVVNYDIPT-----DPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKS 362 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I RR + ++ +++ + + + + Sbjct: 363 IERVIRRPIPSMEPPSAAALSESRIDRFI--------GEIRKAQSEQDLDFFYRLLARIS 414 Query: 625 MDMSPKALQ 633 + + L Sbjct: 415 QEQEIEMLD 423 >UniRef50_Q58083 Probable ATP-dependent RNA helicase MJ0669 n=29 Tax=cellular organisms RepID=H669_METJA Length = 367 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 123/370 (33%), Gaps = 19/370 (5%) Query: 217 FDEEVERLSLFDPLTGQIVST---IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 F+E ++ + + + I I + + A Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ N +E LT + +++ +E+ G N + ++ G+ L + Sbjct: 68 LVNENNGIEAIILTPTRELAIQVADEIESLKG--NKNLKIAKIYGGKAIYPQIKALK-NA 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + L E L K + + Sbjct: 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLF 184 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 SAT L + + D ++ + + L ++ + Sbjct: 185 SATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYG--- 241 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV TKR ++L L + G + +H D+ +R ++IR + + +L+ +++ G Sbjct: 242 LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRG 301 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 +D+ +++ V ++ S + IGR R GKAI ++ + I Sbjct: 302 IDVNDLNCVINYHLP-----QNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERA 356 Query: 569 ERRREKQQKY 578 + + K+ K+ Sbjct: 357 MKLKIKKLKF 366 >UniRef50_C5TNR4 Dead/deah box helicase n=8 Tax=Neisseriaceae RepID=C5TNR4_NEIFL Length = 487 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 57/438 (13%), Positives = 117/438 (26%), Gaps = 32/438 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + F + Sbjct: 46 YENPTPIQAAAIPKAL-AGHDLLAAAQTGTGKTAAFMLPSLELLKRYATSSTSPAMHPVR 104 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + + + G + L Sbjct: 105 MLVLTPTRELADQI-DQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVATVGRL 163 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + ++ L E L + K + Sbjct: 164 LDHVKQKNI-----------------NLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPK 206 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVAT---QVDDLLSEI 439 QT+ SAT + + + + + +E +A + LL + Sbjct: 207 QRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERL 266 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +N +V+V TK+ + +T L + +H D R+E + + G V Sbjct: 267 IVDLHMN-QVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRV 325 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ GLD+ E+ V + + IGR R +G AI DK Sbjct: 326 LVATDVAARGLDIAELPFVINYELPT-----QPEDYVHRIGRTGRAGADGVAISLMDKTE 380 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 M +AI E ++ N+ + + N ++++ R K Sbjct: 381 QKMFEAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYA 440 Query: 619 EPDNVPMDMSPKALQQKI 636 + + + I Sbjct: 441 NKSDKNSKKAEEKNDPGI 458 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 62/382 (16%), Positives = 112/382 (29%), Gaps = 19/382 (4%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 T V + + + L + + + T Sbjct: 27 TPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDSIDP----AQRRVQALILAPT 82 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG- 349 + + + G+P L +VV + I Sbjct: 83 RELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGAQVVVGTPGRVVDHIKRG 142 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 D R L E L E QT SAT + + Sbjct: 143 TLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLFSATMPAPIRRIAHRHMR 202 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G +D + + + L I A ++ +V TK ++ Sbjct: 203 EPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGLD-AAIVFARTKAATAEI 261 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E L G + L+ D++ ER ++ DLR G DV+V ++ G+D+P ++ V D Sbjct: 262 AEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAARGIDVPRITHVFNYD 321 Query: 523 ADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 A + IGR R G+AIL+ + M + I + ++QK + Sbjct: 322 AP-----GDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLTGKPVREQKVPDR 376 Query: 582 HGITPQGLNKKVVDILALGQNI 603 + + + + A Sbjct: 377 AAVIARREERLAERLQAELAGE 398 >UniRef50_Q9Y7T7 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces pombe RepID=PRP28_SCHPO Length = 662 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 59/433 (13%), Positives = 119/433 (27%), Gaps = 26/433 (6%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + L + + + + I + ++ Sbjct: 242 DDLPNPLRNW--EEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQ--------RKDLIG 291 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I M + L +E + + Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G+ +++ P L D L ++ ++V + + Sbjct: 352 LG-FRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADR 410 Query: 350 MYRGDRARKETLVEYGFRLPSALDNR--PLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M + +A + L + QTI SAT + Sbjct: 411 MLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSY 470 Query: 408 VVDQVVRPTGLL-------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 +++ V+ G + + +E+ ++ + EI + + +++ KR E Sbjct: 471 LIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIE 530 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + + L G LH +R I LR D+LV ++ G+D+P VSLV Sbjct: 531 AIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLN 590 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + +S IGR R G AI + + + R K + Sbjct: 591 YNM-----AKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPD 645 Query: 580 EEHGITPQGLNKK 592 E + Sbjct: 646 ELRNHEAAFVRHA 658 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 66/424 (15%), Positives = 120/424 (28%), Gaps = 23/424 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + V+ L + + + + L R Sbjct: 8 LGLSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLVDRSDP 67 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ + E + + R L G+P L A Sbjct: 68 ----QDARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVL-PIYGGQPIDRQMRRLRAGA 122 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + R L E L + Q ++ Sbjct: 123 QIVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVFF 182 Query: 393 SATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + + T + + + L + A Sbjct: 183 SATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVL--AAED 240 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 L+ T TK+ A++L E L++ G R LH D++ R ++ R + +V+V ++ Sbjct: 241 PASALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDV 300 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ ++S V D + S I IGR R G AI + + Sbjct: 301 AARGLDIADLSHVINYDMP-----QDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRL 355 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I K I + + + Q A R +V Sbjct: 356 IERATGSTLVPAKIPSAGEIQVRRTER--LVEQLRRQLQADESDPSLVLYREVVGQLREE 413 Query: 625 MDMS 628 D+ Sbjct: 414 FDLG 417 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats. Identities = 122/677 (18%), Positives = 219/677 (32%), Gaps = 62/677 (9%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A Sbjct: 7 LQRGPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEAR 66 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 + + ++ F V P D ++ +E +R+ +L Sbjct: 67 ETFQDLSLFLGSGKVLL-------------YPPWDIQTTDMFALQRDVELVRMEVLARLL 113 Query: 132 ERRDVVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQR 190 V+VAS+ A+ P L L L G + + ++ +L Y R + Sbjct: 114 TDEPAVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDK 173 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 174 GEFSLRGHVLDIFPPL-EDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVI 232 Query: 251 TPRERIVQAMEEIK---EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 ER +A++ I+ L R V ++ ++ T L + E + + Sbjct: 233 LSEERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPD 292 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES-------HVTIPQIGGMY--RGDRARK 358 + + + T FDYLP + +V+D++ +I + Sbjct: 293 SPTENATATQAV-RLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGKF 351 Query: 359 ETLVEYGFRLPSALDNRPLK----FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 E + A + E AL T Y S G + + Sbjct: 352 YLEREASYVTKDAFIKDLRRFQRMILEGLALGRLTEYAS-GNGEKTQASQYESLPLPLAT 410 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 L D T + L+ IR+ V K + + L + VR Sbjct: 411 DPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPVR 470 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + I VL + L P++ L AI + + G + Sbjct: 471 TPEGSL-------ISEAFLHSGPGVLSLREGRLSRSFLFPDLKLAAISEEELFGKKITG- 522 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 R+AR + K + Y ++ G+ Sbjct: 523 ----RRIRSAREG-------YFLRSFGDLKEGDYVVHKEHGIGLYQGLQKLSVGGIENDF 571 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + I G PI D + + P+ K+ +L G + + Sbjct: 572 LLINY---------QSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRERVKK 622 Query: 654 EAAQIRDQLHQLRELFI 670 ++ ++L + Sbjct: 623 SIQEVAEELVAIYAARE 639 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 57/465 (12%), Positives = 125/465 (26%), Gaps = 39/465 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E F D + P + + ++ Sbjct: 654 EEFSAAFPYDETPDQARAIEDIHADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGR 713 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q Q M + N + ++ + L + Sbjct: 714 QTAVLVPTTILAEQHCQTFSSRMKDYPIRIEALNRFKSK------AEQSSVLEGLRKGQV 767 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H + + + + + + ++A Sbjct: 768 DIVIGTHRLLQKDVTFKNLGLVIVDEE--------QRFGVAHKEKLKKLRTLVDVLTLTA 819 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 TP L S + D + T D I+ + + + IR+ A N +V Sbjct: 820 TPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLEFNEETIREAIRRELARNGQVFFLH 879 Query: 454 LTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 R + +E+ +H + E +++ E +VLV ++ GLD Sbjct: 880 DRVRSIYTMARLVEKLVPEADIGVVHGQMKPREIEDVMGRFLRKECNVLVCTTIIGSGLD 939 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 +P + + + AD+ G + L Q GR R+ + ++ Sbjct: 940 IPTANTILVNRADRFGLAQ----LYQIRGRVGRSSEEAYAYLLVPK----GVLLSRDAQK 991 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + E G G D+ G ++ V ++ + Sbjct: 992 RLQVIMDFSEPG---SGFRIASSDMEIRGGGNLLGTSQSG-------HVSAVGYELYTEL 1041 Query: 632 LQQKIHELEGL---MMQHAQNLEF-EEAAQIRDQLHQLRELFIAA 672 ++Q I E++G + + A + + + + Sbjct: 1042 MEQTIREIKGETIPEEEIVPEINLGLPAFIPEEYMADVHRRLVTY 1086 >UniRef50_A3ZWP8 ATP-dependent RNA helicase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZWP8_9PLAN Length = 428 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 105/383 (27%), Gaps = 40/383 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +E F I + Sbjct: 24 YIQPSPIQAAIIPLALEG-RDVLGQARTGTGKTAAFGIPIIERLEHGPNS------RNPQ 76 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E +LT Q + G + + P + Sbjct: 77 ALILTPTRELAVQVRDEIAKLT-HGQRINVVAVYGGKPLRSQMEKLKRAPHIVVGTPGRV 135 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + L + V + + M K Sbjct: 136 IDLMTRRALQLEMLRTVVLDEADRMLDI-----------------GFRPDIEKILRRCPE 178 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT+ +SAT + + + + ++ + + D L+ Sbjct: 179 ERQTLLLSATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVEL 238 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +++ ++ +V TKR E +T+ L + + V +H D+ R + D + +F Sbjct: 239 LKRE--QPQKAIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFR 296 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 VLV +++ G+D+ +VS + D + + +GR R G A + Sbjct: 297 VLVATDVVGRGIDISDVSHIINYDIPEF-----SDDYVHRVGRTGRMGKEGIAYTFVTPE 351 Query: 558 TPSMAKAIGETERRREKQQKYNE 580 + I + + + Sbjct: 352 EGNELTRIEVRIDKLLIRDELPG 374 >UniRef50_Q54Y81 ATP-dependent RNA helicase ddx23 n=1 Tax=Dictyostelium discoideum RepID=DDX23_DICDI Length = 834 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 59/438 (13%), Positives = 115/438 (26%), Gaps = 43/438 (9%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 R IL + +L Y + P + I + L ++ ++ Sbjct: 421 PREILEAIRQLGYEKPS------------------PIQMQSIP--ISLTGRDILGIAE-- 458 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F I + + L L E + Q Sbjct: 459 ----TGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQ 514 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G + Y P L D L L++ +++ + + Sbjct: 515 HFG-FRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEAD 573 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----ALAPQTIYVSATPGNYELEKS 404 M + T V E+ E + TI SAT + S Sbjct: 574 MMIDLGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLS 633 Query: 405 GGDVVDQVVRPTGL----LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRM 458 + G +D I + +D + Q +++ K+ Sbjct: 634 KKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKH 693 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + + LEE LHS +R + + +++VL+ + G+ + V+ V Sbjct: 694 CDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHV 753 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D ++ IGR R + G A + + + + Sbjct: 754 INFDIP-----KNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVP 808 Query: 578 YNEEHGITPQGLNKKVVD 595 + Q + D Sbjct: 809 IELLKHPSSQQKHGSSKD 826 >UniRef50_UPI00016C0D94 ATP-dependent RNA helicase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0D94 Length = 472 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 90/326 (27%), Gaps = 14/326 (4%) Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 T+ + + GE L +VV + Sbjct: 2 LCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDH 61 Query: 347 IGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + + L E L E Q + SAT +E + Sbjct: 62 MRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIAN 121 Query: 406 GDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAE 460 + V T I + + + N + +LV TK+ + Sbjct: 122 KYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVD 181 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 DL + L G + LH D+ + R ++ R G D+L+ ++ G+D+ +V V Sbjct: 182 DLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFN 241 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + + IGR R G + + + I + + Sbjct: 242 YDLPI-----DDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIP 296 Query: 580 EEHGITPQGLN--KKVVDILALGQNI 603 I +N + I Sbjct: 297 TMDDIKGNKVNSILDEIKEEIKEGKI 322 >UniRef50_Q8I0W7 Snrnp protein, putative n=32 Tax=Eukaryota RepID=Q8I0W7_PLAF7 Length = 1123 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 49/387 (12%), Positives = 107/387 (27%), Gaps = 25/387 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ +E + + F + ++ + ++ Sbjct: 718 YEKPTPIQMQAIPIALE-MRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPY 776 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + + G + + + P L Sbjct: 777 ALVIAPSRELAIQIYEETNKFASYCS-CRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRL 835 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE-- 383 D L ++ ++V + + M + + + E Sbjct: 836 QDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMM 895 Query: 384 -----ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQ 431 L T SAT S + G ++ +E + Sbjct: 896 TKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFL-TEGK 954 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L EI + ++V K++A+ +++ + + + LH R + + Sbjct: 955 KKQKLQEILEMYEPP--IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSA 1012 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 + EFD+LV ++ G+D+ V LV D + S IGR R G A Sbjct: 1013 FKNAEFDILVATDVAGRGIDVHGVKLVINFDMP-----KDIESYTHRIGRTGRAGMKGLA 1067 Query: 551 ILYGDKITPSMAKAIGETERRREKQQK 577 I + + + + + Sbjct: 1068 ISFITEHDSHLFYDLKQFLISSNNIVP 1094 >UniRef50_A0KZD5 DEAD/DEAH box helicase domain protein n=22 Tax=Alteromonadales RepID=A0KZD5_SHESA Length = 487 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 93/369 (25%), Gaps = 33/369 (8%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 F + + + L L Sbjct: 58 EGKDIMACAQTGTGKTASFALPVLEQLSKQPND-----KPLLRALVMTPTRELAIQVCAN 112 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 Q+ +Q + G + P LFD + L + + + Sbjct: 113 IQKYSQ-FLPLKTLAVYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFHLDLSSVTTL 171 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 I + M K + A QT+ SAT + + Sbjct: 172 VIDEADRMLDL-----------------GFVRDIEKVKRLIATEHQTMLFSATYSDAVKQ 214 Query: 403 KSGGDVVDQVVRPTG--LLDPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRM 458 S + +E + + +VLV TK Sbjct: 215 LSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKEC 274 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 AE L + L G H D R ++ D + G+ VLV ++ GLD+ + LV Sbjct: 275 AEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLV 334 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 L+ + IGR R +G+AI + M I + Sbjct: 335 INLELPFL-----AEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGQTLPVTV 389 Query: 578 YNEEHGITP 586 TP Sbjct: 390 QPGYEEGTP 398 >UniRef50_A2U4F0 DEAD/DEAH box helicase n=4 Tax=Flavobacteriales RepID=A2U4F0_9FLAO Length = 411 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 54/394 (13%), Positives = 107/394 (27%), Gaps = 36/394 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +++ F + + ++ + E+ + Sbjct: 21 FHKPTLVQEKTIPLVLDK-KNVIVAAQTGTGKTAAFALPIIN--LLFDKQDAEKGEKKIK 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L LE + + G + P L Sbjct: 78 ALVITPTRELAIQI-LENFKSYSKYSNLRSTAVFGGVSLEPQKEILAKGVDILVATPGRL 136 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + L E L N K E+ Sbjct: 137 IDLQMQGNI-----------------DLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPR 179 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT E S V + + ++ P + D L Sbjct: 180 KKQTLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHL 239 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R ++++ TK + L + L ++G V +H D R + I D + + Sbjct: 240 LRNTIN--GKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKAS 297 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +L+ ++ G+D+ V + D + IGR R G A + Sbjct: 298 ILIATDVAARGIDITNVDAIINFDIPNV-----PEIYVHRIGRTGRAGKSGIAFSFCSPD 352 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + +I + K + + P+ K Sbjct: 353 ENNYIASIENLIEKSIKVIEDHPYPINKPKHTKK 386 >UniRef50_B8I5B1 DEAD/DEAH box helicase domain protein n=2 Tax=Clostridium RepID=B8I5B1_CLOCE Length = 542 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 56/439 (12%), Positives = 123/439 (28%), Gaps = 32/439 (7%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ + T V + I + + + Sbjct: 14 ILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQLTNPEEA--- 70 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + LT + +++ N++ + + + L +V Sbjct: 71 GPQGLILTPARELAVQVDNDIRKMAKYLKH--KTTAIYGQHNINLETQILNKGVSIVTGT 128 Query: 340 SHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I G R L E L ++ ++ + T+ SAT Sbjct: 129 PGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFSATMPP 188 Query: 399 YELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + V + + + L + E ++ Sbjct: 189 EIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLL--IVEKPESCMI 246 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK + + +L + G R LH DI +R+ I+ + G+F +LV ++ G+ Sbjct: 247 FCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGIH 306 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 + ++SLV D + + + IGR R + G+A I E Sbjct: 307 IEDLSLVINYDVPN-----DKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEIEEHIG 361 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +++ +E T A + KA + P + + Sbjct: 362 TLILEEELPDEEAFT-----------KAREEAAQWIKANSLKEKAPRSASADSSVKQKRT 410 Query: 631 ALQQKIHELEGLMMQHAQN 649 K + + ++++ Sbjct: 411 GQNSKSNRIPNGRPEYSKR 429 >UniRef50_Q86TM3 Probable ATP-dependent RNA helicase DDX53 n=3 Tax=Simiiformes RepID=DDX53_HUMAN Length = 631 Score = 258 bits (658), Expect = 7e-67, Method: Composition-based stats. Identities = 53/423 (12%), Positives = 126/423 (29%), Gaps = 44/423 (10%) Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 R ++ P +S + + + + + + H + Sbjct: 239 RVGIVKPTPIQSQAWPI--------ILQGIDLIVVAQTGTGKTLSYLMPGFIHL--DSQP 288 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I + L L +E + + + G + Sbjct: 289 ISREQRNGPGMLVLTPTRELAL--HVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGV 346 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D + + + +++ I + M + + Sbjct: 347 DIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD-----------------MEFEPQ 389 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRP 427 K QT+ SAT + + + + D ++ G + I V Sbjct: 390 IRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTT 449 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L E + + N++V++ K +A+DL+ G LH + + ++ Sbjct: 450 EKEKR-ALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQER 508 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + D + G +L+ +++ GLD+ +V+ V D R+ + +G R Sbjct: 509 AVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFP-----RNIDVYVHRVGYIGRTGK 563 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G ++ + MA + + R + + LN++ + + Sbjct: 564 TGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQR 623 Query: 607 KAK 609 + + Sbjct: 624 RKE 626 >UniRef50_A1B2U6 DEAD/DEAH box helicase domain protein n=23 Tax=Rhodobacterales RepID=A1B2U6_PARDP Length = 479 Score = 258 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 58/386 (15%), Positives = 107/386 (27%), Gaps = 42/386 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + P + I + L F + T + Sbjct: 86 GIETPSPIQEKSIP--------GIVAGRDLLGLAQTGTGKTAAFGLPMLTRLLNI---GR 134 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L T + G ++ Sbjct: 135 KPEPRTCRALILAPTRELATQIAENIDNYAIGTP-IRQFRVVGGASINVQVQRLERGVDV 193 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D + + + ++ + + L + Sbjct: 194 LIATPGRLIDLIERGAIDLSQTRYLVLDEADQ-----------------MLDIGFIHALR 236 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQ 431 + + QT+ SAT E + + D + E Sbjct: 237 RIAKMLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGD 296 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL+E ++E +V TK +E L + L++ G +V +H + +R + Sbjct: 297 KATLLAEYLS-KHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALAS 355 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R GE VLV ++ GLD+P+V+ V D + + IGR AR G+A Sbjct: 356 FRAGETKVLVATDVAARGLDIPQVAHVYNYDLPNV-----PENYVHRIGRTARAGRDGRA 410 Query: 551 ILYGDKITPSMAKAIGETERRREKQQ 576 I + +AI + + + Sbjct: 411 IAFCSPTEIGELRAIEKAMKAKIAVV 436 >UniRef50_Q26CN9 ATP-dependent RNA helicase n=2 Tax=cellular organisms RepID=Q26CN9_9BACT Length = 644 Score = 258 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 50/434 (11%), Positives = 115/434 (26%), Gaps = 23/434 (5%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 I + +I + + Q L++ N + + T+ + Sbjct: 38 EIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQ 97 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDR 355 + + G + ++V + + + D Sbjct: 98 ICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRRGAQIIVATPGRLMDLMKRREVKLDA 157 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + L E L SAT +V Sbjct: 158 LKYMVLDEADEMLNMGFKEDIDFILSKSDTGRNIWLFSATMAREIKRIVDTYMVQPEEVR 217 Query: 416 TGL---LDPIIEVRPVATQVDDLLSEIRQRAAINERVL--VTTLTKRMAEDLTEYLEEHG 470 ++ IE + + + D + +R+ +E + V TKR +++ + L +G Sbjct: 218 INPKNIVNKNIEHQSIQLKASDKIEALRRFLDYDEDMFGVVFCRTKRDTQNVADQLNNNG 277 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LH D+ +R ++ R +L+ ++ G+D+ +++ V Sbjct: 278 YATEALHGDMSQAQRDAAMKRFRNKNLKLLIATDVAARGIDVDDITHVIH-----FALPD 332 Query: 531 SERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 GR AR G +I + K I Q + IT + + Sbjct: 333 DPEFYTHRSGRTARAGKKGVSIALITRGDNRKLKFIASKLGIEFTQGEVPALEAITQKRI 392 Query: 590 NKKVVDILALGQNIAKTK------AKGRGKSRPIVEPDNVPMDMSPKALQQKI-----HE 638 ++ +++ N + + + ++ Sbjct: 393 SRWSENMIKQEINEKIDEQLVNAVQESFADVTKEEIIAKLLTKEYNSIYKRNSISDLNDR 452 Query: 639 LEGLMMQHAQNLEF 652 +G + E Sbjct: 453 SKGRDRDDSPRRER 466 >UniRef50_A4C3X3 RNA helicase DeaD n=3 Tax=Alteromonadales RepID=A4C3X3_9GAMM Length = 624 Score = 258 bits (658), Expect = 8e-67, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 116/386 (30%), Gaps = 16/386 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L ++ ++ +T + + ++ + + L Sbjct: 11 QLNLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPL---LS 67 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L + K + + + ++ + E F++ G+ L Sbjct: 68 RLDADLKQPQMLVVCPTRELAIQ-VAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARG 126 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + I + D + L E L Q + Sbjct: 127 PQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAF 186 Query: 392 VSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAA--IN 446 SAT + + + D + P I + + + A Sbjct: 187 FSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDY 246 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++V T+ L E+L G + L+ D+ +R I+ L+ G ++L+ +++ Sbjct: 247 DAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVV 306 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+P ++ V D S + IGR R G+AIL+ + Sbjct: 307 ARGLDVPRITHVINYDLPH-----DSESYVHRIGRTGRAGREGEAILFASHREVRSLSRL 361 Query: 566 GETERRREKQQKYNEEHGITPQGLNK 591 + + + + + Sbjct: 362 ERITEGKIEVFDMPTAEQLGQARIER 387 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 110/662 (16%), Positives = 192/662 (29%), Gaps = 78/662 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 D L +E + GV+G K I ++ A R +VLA ++ Sbjct: 4 LSTLLDGVTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEG 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L ++ V P+ D + E RL M Sbjct: 64 QRLCNDLSSMGTAALV---------------YPARDFNFRAAEGQSREYEHQRLQVMAGM 108 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L+ VV++ + A PD L L G I L+ Y R Q Sbjct: 109 LDGDYQVVISCIDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEG 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTH 248 G F VRG ++D F ++ +RVE + +E++ L FDP T + + T+ P T Sbjct: 169 PGQFAVRGGILDFFTPDASA-PVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTE 227 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + LA + + L + R +R + + + + Sbjct: 228 VLVSSPGS----------LAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADK 277 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + L P TL DYL + L+ E ++ + +E G Sbjct: 278 FLPLLYP-----SPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEGILC 332 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + L + T + +++ ++ Sbjct: 333 KGLDAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPLSSLINL---------NARQLSVW 383 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L ++ + R++V T+R A E L+ G Y R + Sbjct: 384 GGGMQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEY---------RDDA 434 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 G VL L G + P + I + AR Sbjct: 435 KTLFL-GRVTVL--PGSLSAGFEYPTANFALITHGHFAAAPKR-----------ARKRQK 480 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 A + H + QG+ K + + +I Sbjct: 481 NAKEIYSLSE---LAPGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDIL---- 533 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 P+ + D V + PK + +++ L G Q A+ I +L +L Sbjct: 534 -----YVPVTQLDMVSKYIGPKEEVKVRLNRLGGQDWQKAKARVRSAVKDIAKELIKLYA 588 Query: 668 LF 669 Sbjct: 589 ER 590 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 65/464 (14%), Positives = 129/464 (27%), Gaps = 41/464 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ E D L P + + ++ Sbjct: 608 FESRFEYEETEDQLRCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVTDSKQC 667 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q Q + G+ +E SRF + + + L + + Sbjct: 668 ALLVPTTILAWQHYQTVTQRFE--GFPIKVEILSRFRTP----KQQAEILKQLKRGEIDM 721 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + +G + + +SATP Sbjct: 722 IIGTHRLVQKDVQFRDLGLVIIDEEQRFGVAQKERF--------KSVTKNVDVLTLSATP 773 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + + D D V ++ +R+ +V Sbjct: 774 IPRTLNMALSGIRDMSSLEEAPQDRHPVQTYVLEYDQAVINDAVRRELRRGGQVYYLHNK 833 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E + L+ +V + H + E E+ R + E +VLV ++ G+D+P Sbjct: 834 VESIERVAARLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVP 893 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I DAD G + + I + +A Y + I + +R Sbjct: 894 NVNTIIIEDADHMGLSQ-----LHQIRGRVGRSSRRAYAYLTFTRNKVLSEISQ---KRL 945 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + E G G + D+ G + + V DM + L Sbjct: 946 AAIREFTEFG---SGFKIAMRDLELRGAGNILGGEQHG-------HMETVGYDMYLRLLG 995 Query: 634 QKIHELEGLMMQHAQNLE-----FEEAAQIRDQLHQLRELFIAA 672 + + E +G + LE +A + L + Sbjct: 996 EAVSEEKGE-EASSYELECLVDVQVQAHIPEGYIESLSQRLEIY 1038 >UniRef50_D0WN23 ATP-dependent RNA helicase DeaD n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN23_9ACTO Length = 767 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 110/421 (26%), Gaps = 21/421 (4%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + + + + V + L A Sbjct: 137 DLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAHIDPEKREV 196 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + T+ + ++ ++ G L +VV Sbjct: 197 QA----LVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGGAQVVVG 252 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + R D R L E L K + SAT Sbjct: 253 TPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISALFSATMP 312 Query: 398 NYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + D + + V P ++ L + + L Sbjct: 313 PPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVL--AVTEAQAAL 370 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T+ AEDLT L G L D+ ER +++ LR G DVLV ++ GL Sbjct: 371 VFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVAARGL 430 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ + LV D R + + IGR R G++I + + I + Sbjct: 431 DVDRIGLVVNFDVP-----RETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRIEKQT 485 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMS 628 R +Q + ++ + V +A + Sbjct: 486 GSRMEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQSGSG 545 Query: 629 P 629 Sbjct: 546 A 546 >UniRef50_B6BTD3 Dead/deah box helicase domain protein n=1 Tax=beta proteobacterium KB13 RepID=B6BTD3_9PROT Length = 444 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 59/380 (15%), Positives = 109/380 (28%), Gaps = 34/380 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ + V F + V + + + Sbjct: 21 YSTPTPIQEQCIP-VVLSGKDVLASAQTGTGKTAAFCLPLLN-LVEKKPKHKHKRNISPD 78 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L +E + + G ++N + P L Sbjct: 79 VLILSPTRELATQI-EQELKRFSHFMDTNIVSVVGGVSYKLQNKLLKSNVNFLVATPGRL 137 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + I + M K E + Sbjct: 138 MDLVKQRKINLKHIDALVIDEADRML-----------------DMGFIPDIKKIFESTSQ 180 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 Q + +AT + + + D + I Q +L + Sbjct: 181 DQQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVD 240 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A +N + ++ T TKR A+ L++ L R + LH D+ ER I + E Sbjct: 241 VLNEADLN-QAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQ 299 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 +LV ++ G+D+ +++ V D R I IGR R GKAI Sbjct: 300 ILVATDVAARGIDVDDITHVINFDLP-----RQVEDYIHRIGRTGRAERKGKAISLVIDK 354 Query: 558 TPSMAKAIGETERRREKQQK 577 M + I + + + K Sbjct: 355 EKFMLQKIEKYANIKIEVIK 374 >UniRef50_A8TFK3 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TFK3_METVO Length = 584 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 57/466 (12%), Positives = 130/466 (27%), Gaps = 40/466 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + ++ F I E + ++ + Sbjct: 21 FTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQKIQEKIEENGRKNKKAVK 80 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L E S + L G+ Sbjct: 81 AIILTPTRELALQVHDE-------------------IDSVNKGNKLRLCTVYGGQSIEKQ 121 Query: 326 FDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L +V+ I + + + L E L + + Sbjct: 122 INKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCK 181 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE---VRPVATQVDDLLSEIRQ 441 + + SAT +E + + E + D +R+ Sbjct: 182 EDCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRR 241 Query: 442 RA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 LV TK + L L + LH D++ +R + + + D+ Sbjct: 242 IIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDI 301 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 ++ ++ G+D+ E++ V D ++ + + IGR R G AI + + Sbjct: 302 MIATDVAARGIDINELTHVINYDIP-----QNPEAYVHRIGRTGRAGNKGTAITFVEPRE 356 Query: 559 PSMAKAIGETER---RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 K I + + ++EK E +T + K+ ++ + + Sbjct: 357 FRRFKYIMKISKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDSEDLENYEFEN 416 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + + + S + + I +L L + +I D Sbjct: 417 LEIVDELIELADSKVIIDKLISQLFKE------ELNRKSYGRIGDY 456 >UniRef50_Q26696 Putative DEAD-box RNA helicase HEL64 n=7 Tax=Trypanosomatidae RepID=DDX17_TRYBB Length = 568 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 116/403 (28%), Gaps = 28/403 (6%) Query: 201 DIFPAESDDIALRVELFDEE--------VERLSLFDPLTGQIVSTIPRFTIYPKTHYV-T 251 + DD + FD +++L+ + V + V Sbjct: 86 HVITIFGDDCPPPMSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGV 145 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + + + LA + + T+ + + E Sbjct: 146 AKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEETKKVIP--GDV 203 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPS 370 + G P L ++V I + R L E L Sbjct: 204 YCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDM 263 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----IEVR 426 + + K QT+ SAT + + G + + R Sbjct: 264 GFEPQVRKICGQIRPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQR 323 Query: 427 PVATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + TQ E+R+ + ERVLV KR A++L L G +H D + + Sbjct: 324 FILTQEFAKQDELRKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQ 383 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R I+ R LV ++ GLD+ ++ V D + IGR R Sbjct: 384 REFILARFRKDPRLCLVATDVAARGLDIKQLETVINYDFPM-----QIDDYVHRIGRTGR 438 Query: 545 -NVNGKAILYGDKIT----PSMAKAIGETERRREKQQKYNEEH 582 G+ + K PS+ K + R +++ Sbjct: 439 AGGEGRCVYLITKKEAQITPSVLKELIGILERAQQEIPDWMIE 481 >UniRef50_B8FPB9 DEAD/DEAH box helicase domain protein n=12 Tax=Bacteria RepID=B8FPB9_DESHD Length = 428 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 53/382 (13%), Positives = 108/382 (28%), Gaps = 36/382 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ ++ E +E L L F I + + + Sbjct: 24 YSEATPIQAEAIPHLLEGLDLLG-CAQTGTGKTAAFAIPILQSLAMGQGLLKGKRQ--IR 80 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++ G + P L Sbjct: 81 ALVLAPTRELATQIA-ESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPGRL 139 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + H + + L + + + + Sbjct: 140 LDLINQGFIDLSHVEHFVLDE-----------------TDQMLDMGMLHDVKRIITYLPR 182 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 Q + SAT + + + V ++ + A + L Sbjct: 183 ERQNMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYW 242 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ + VLV + TK A+ + + L + G +H + R + + + + Sbjct: 243 LKN--NEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTR 300 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ GLD+ E+S V + + I IGR R GKAI + D Sbjct: 301 ILVATDIAARGLDIQELSHVINYNLP-----EVPETYIHRIGRTGRAGLGGKAITFCDFE 355 Query: 558 TPSMAKAIGETERRREKQQKYN 579 + + I + + + K + Sbjct: 356 EKPLLRDIQKRIGKTLPEVKEH 377 >UniRef50_A4C1L2 ATP-dependent RNA helicase n=2 Tax=Polaribacter RepID=A4C1L2_9FLAO Length = 609 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 102/338 (30%), Gaps = 12/338 (3%) Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + Q + LL++N + + T+ + + Sbjct: 44 KAFAQTGTGKTAAFSLPILELLDSNSGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKV 103 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSAL 372 + G L +VV T+ I + + L E L Sbjct: 104 TTVYGGSSMEDQIRSLKRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGF 163 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVA 429 + K E QT+ SAT + + V +G + + + Sbjct: 164 KDELDKVLEATPDTKQTLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYS 223 Query: 430 TQVDDLLSEIRQR--AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ + ++ T+R +++ + L + G LH D+ +R Sbjct: 224 VTERTRYPALKRIADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDS 283 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ R +LV ++ GLD+ E++ V + GR R N Sbjct: 284 VMGKFRKKTIQILVATDVAARGLDVTELTHVIN-----HKLPDQIENYTHRSGRTGRAGN 338 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G +I+ + + I + +++ + K I Sbjct: 339 TGISIVLVNGKEKGKLRPIEKIIQKKFTEAKVPSGKDI 376 >UniRef50_Q3IJ60 ATP-dependent RNA helicase, cold shock protein A n=3 Tax=Alteromonadales RepID=Q3IJ60_PSEHT Length = 616 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 58/453 (12%), Positives = 130/453 (28%), Gaps = 25/453 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ + T + + + + + Q A Sbjct: 10 LNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVL----GLAQTGTGKTAAFALPLLN 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ + + + T+ + E + G+ L Sbjct: 66 NIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGA 125 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I I + D + L E L + E QT Sbjct: 126 QVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVA---TQVDDLLSEIRQRAAIN 446 SAT S + + + + E + ++ + Sbjct: 186 SATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASIHKNKAIVRFLEAEQYEG 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V T+ L E LE G L+ D++ R + L+ G +V++ ++ Sbjct: 246 --AIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATDVA 303 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ +SLV D + + + IGR R GKAIL+ + K I Sbjct: 304 ARGLDVDRLSLVINYDIP-----QDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358 Query: 566 GETERRREKQQKYNEEHGITPQGLN--KKVVDILALGQNIAKTKAKGRGKSRP----IVE 619 Q + + + + + + + ++I ++ + Sbjct: 359 IRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKLELSAED 418 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + ++ + K+ E++ + + + Sbjct: 419 LAGALLCLAQQQSPIKVEEVKIQPRERNERNDR 451 >UniRef50_A6RW79 Pre-mRNA-processing ATP-dependent RNA helicase prp5 n=2 Tax=Fungi/Metazoa group RepID=PRP5_BOTFB Length = 1151 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 70/455 (15%), Positives = 131/455 (28%), Gaps = 35/455 (7%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST---IPRFTIYPK-- 246 +D D+ V+ + + + D +T I I Sbjct: 531 EIADLRLELDGIKVAGKDVPKPVQKWSQCGLDVKSLDVITKLGYERPTSIQMQAIPAIMS 590 Query: 247 -THYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + + R + L+ + +T + ++ E Sbjct: 591 GRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKGSDGPIGLIMTPTRELATQIHKECKPF 650 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKE 359 G L ++V I + G + R Sbjct: 651 LKAM--GLRAVCAYGGAIIKDQIADLKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYV 708 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-- 417 L E + + +K QTI SAT + + V G Sbjct: 709 VLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATMPRIMDALAKKTLQSPVEIVVGGR 768 Query: 418 -----LLDPIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHG 470 + I+EVR + LL + + +E R L+ + A+DL + L G Sbjct: 769 SVVAPEITQIVEVREEKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKG 828 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D V+R I D + G +++ ++ GLD+ ++ LV DA Sbjct: 829 YPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNH---- 884 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + GR R N G A+ + + + I + + ++ Sbjct: 885 -LEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALEQSGQEVPDRLNEM------ 937 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 K D + G + +G+G R E + Sbjct: 938 RKSYKDKVKSGAKKESSGFRGKGLERFDAEREATK 972 >UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukaryota RepID=DBP3_NEUCR Length = 614 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 58/425 (13%), Positives = 122/425 (28%), Gaps = 55/425 (12%) Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + F A ++ ++ + + + F++ + + + Sbjct: 194 NPFAAYTNPTPIQSASWPFSL-SGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSR 252 Query: 261 EEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCSGIENYSRFL--SGRG 317 + A E + G + + Sbjct: 253 DRTAHPRAVIVSPTRELAMQTHAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDI 312 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D+L + + + S + + L Sbjct: 313 ITATPGRLKDFLSEGSISLANVSFAVLDEADR-----------------MLDRGFSEDIK 355 Query: 378 KFEEFEALA--PQTIYVSATPGNYELEKSGGDVVDQVVRPTG------------------ 417 QT+ +AT + + +++ G Sbjct: 356 LILSGCPPKEQRQTLMFTATWPLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQ 415 Query: 418 ---LLDPIIEVRPVATQVDDLLSEIRQRAA---INERVLVTTLTKRMAEDLTEYLEEHGE 471 ++ +EV + L +++ ++R+LV L K+ A + ++L G Sbjct: 416 ANSRIEQKVEVVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGI 475 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +V +H D+ +R + + G VLV ++ GLD+PEV LV + + Sbjct: 476 KVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVKLVINVTFPL-----T 530 Query: 532 ERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + IGR R GKAI + + + ++ R ++ EE + Sbjct: 531 IEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILRAAKQ--PVPEELLKFGTTVK 588 Query: 591 KKVVD 595 KK D Sbjct: 589 KKAHD 593 >UniRef50_A0BDT5 Chromosome undetermined scaffold_101, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BDT5_PARTE Length = 1238 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 70/510 (13%), Positives = 142/510 (27%), Gaps = 80/510 (15%) Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RL A +++ + P G I + +L Sbjct: 68 ERLEAFYR----EKEIIIKTFE--NQKVPPPFLSWAS----AGFPIPILESIEQLQ---- 113 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 ++ +F + + + Sbjct: 114 ------------------------FKSPTIIQSVVFP-IILAGYDVIGIAQTGSGKTIAY 148 Query: 242 TIYPKTHYVTPRER--IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + + + + + L L E Q TQ + + Sbjct: 149 LLPGLIQITSQKTEELNNTKKQNGPQMLILVPTRELAMQIESEIQLFTQNYRLKTLCIYG 208 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + Y+ P L D+L + + S++ I + + Sbjct: 209 GINNRKNQFYNLGRFPNILVATPGRLLDFLREGATTLANVSYLVIDEADRLLELG----- 263 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG- 417 ++ + + QT++ SAT + + + G Sbjct: 264 ------------FEDTIREIVQQIRFDRQTVFFSATWPKAVKDLAFDFCQYSPIYVQIGK 311 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 +D I ++ LL I I+++VL+ + K+ E L+ + + G Sbjct: 312 SNLTINKNIDQEIICLFQKDKLQKLLD-ILDTLKISDKVLIFSEQKQRCEQLSINMADKG 370 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LH D +R EI++ R G +L +L GLD+ ++++V D K Sbjct: 371 YYTIALHGDKTQPQRDEIMKAFRSGYTRLLCATDLASRGLDVTDITVVINYDFPKY---- 426 Query: 531 SERSLIQTIGRAARN-VNGKAILYG--DKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 I IGR R GKA + DK P +AK + + + + + Sbjct: 427 -FDDYIHRIGRTGRGEKKGKAFSFLAYDKDEPRIAKELLKLAQVANLKYDDSALQNFAIG 485 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + D + + R ++ + Sbjct: 486 IFPQMRNDFEY----NRFKQQQSRDNNQRV 511 >UniRef50_A7AWZ5 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=3 Tax=Piroplasmida RepID=A7AWZ5_BABBO Length = 994 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 49/405 (12%), Positives = 108/405 (26%), Gaps = 42/405 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ + + + + H + + Sbjct: 408 YEKPFPIQMQCIP-ALMCGRDVLAIAETGSGKTMAYLLPAIRHVLYQPKLRENE---GMI 463 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + +E +L + G G + + P L Sbjct: 464 VLIIAPTRELASQIGVESSKLCKLVG-IRTKAVYGGSPIGEQLNALKRGVEIVCGTPGRL 522 Query: 326 FDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + L + + V I + M+ + + Sbjct: 523 IEVLTISNGKVTNLRRVTFVVIDEADRMFDL-----------------GFSPQISAIVDN 565 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDL 435 QT SAT + + + G +D + V P ++ L Sbjct: 566 IRPDRQTALFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQHVMVLPERQKMYAL 625 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + + ++V + A+ + L +HG LH D +R ++D R G Sbjct: 626 LKLLGEWHEHGS-IIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDREFTLQDFRDG 684 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 +L+ ++ G+D+ V LV + +GR R N G + + Sbjct: 685 TKGILIATSIAARGIDVKNVVLVINYATP-----DHIEDYVHRVGRTGRAGNIGTSYTFI 739 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + + I + + + ++ +D Sbjct: 740 TPEEGAKSHDIIKAMKASNQVVP---IELQELAEMHLATLDGRQK 781 >UniRef50_C4LK58 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LK58_CORK4 Length = 558 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/449 (13%), Positives = 118/449 (26%), Gaps = 39/449 (8%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + F + + L ++ + + + + + Sbjct: 111 GITHTFAIQELTLPLALD--------GKDLIGQARTGMGKTLAYGVPLLDRIF--DDAAI 160 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 ++ L L + + E+ S ++ Sbjct: 161 PELDGTPRALVVAPTRELAYQVADDLTLAARHLANF-----------NEEHRSLRVTTIC 209 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRP 376 G P L +V + L E L Sbjct: 210 GGHPFEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDI 269 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPVAT 430 K + QTI SAT + + + V +V Sbjct: 270 EKILQQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNH 329 Query: 431 QVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +++ L LS I Q R ++ T TKR A D+ + L + G V +H D+ R + Sbjct: 330 KLNKLATLSAILQAHNRG-RTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKS 388 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + R + ++LV ++ G+D+ +V+ V + + IGR R + Sbjct: 389 LNAFRSKKIEILVATDVAARGIDVDDVTHVINYQVP-----DDAMTYVHRIGRTGRAGHT 443 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL--GQNIAK 605 G A+ + K I + + + D+ Sbjct: 444 GTAVTLVGWDEVTKWKVIDDELDLNIGELDEWFSTSPELREALDIPDDVNERVGESRPVY 503 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 AK R + + P + + Sbjct: 504 GGAKALSPQRKSAKRASRPRRDNRRQGDP 532 >UniRef50_Q48FQ8 ATP-dependent RNA helicase, DEAD box family n=23 Tax=Pseudomonadaceae RepID=Q48FQ8_PSE14 Length = 570 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 55/387 (14%), Positives = 112/387 (28%), Gaps = 20/387 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +EL V + + I + + A Sbjct: 22 LELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGK----TAAFALPILH 77 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ +K + + T+ + + + G P + Sbjct: 78 RIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGA 137 Query: 334 LLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + L E L + + QT+ Sbjct: 138 QIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVLF 197 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAI 445 SAT + + D + + + +LS + Sbjct: 198 SATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL--EVED 255 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +++ TK+ DL LE G + L+ DI +R +I L+ G D++V ++ Sbjct: 256 FDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDV 315 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+P ++ V +D S + IGR R G+A+L M + Sbjct: 316 AARGLDVPRITHVFNVDMP-----YDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQV 370 Query: 565 IGETERRREKQQKYNEEHGITPQGLNK 591 I ++ + + + + + K Sbjct: 371 IERVTGQKVAEVRLPDAQAVLDARIKK 397 >UniRef50_B2UL73 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UL73_AKKM8 Length = 423 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 60/418 (14%), Positives = 111/418 (26%), Gaps = 39/418 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ L L F + ER + Sbjct: 24 YKTPTPIQAACIPLLLQNKDLMG-LAQTGTGKTAAFALPLIQQL---SERSGKPPGRRVR 79 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E R R + G + P L Sbjct: 80 ALILSPTRELAAQIH-ENIRAYARGLHLSTAVIFGGVGYASQFKELAGGLDILVATPGRL 138 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + + + + M K Sbjct: 139 IDHLERRTVSLDGVETLILDEADHMLD-----------------MGFAPALKKIVSKIPR 181 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 T SAT + + + + ++ + + ++ L E Sbjct: 182 KRHTQMFSATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLE 241 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++ + R L+ T T+ A+ L +L +H D R ++R+ R G+ Sbjct: 242 LLKQQELPGRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTP 301 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ G+D+ +V LV D + IGR AR G+AI Sbjct: 302 VLVATDIAARGIDVKDVRLVINYDLP-----EEPEVYVHRIGRTARAGAAGQAIALCSPE 356 Query: 558 TPSMAKAIGETERRREKQ----QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 A+ + + R E P+ K+ + + KG Sbjct: 357 EIRKARNVHKLLGRLLPVHASSASVPAELRAVPEARRKRSSPMQEKRSAPRREPRKGY 414 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 116/658 (17%), Positives = 212/658 (32%), Gaps = 76/658 (11%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 + + LE G H L G+ GS +A+++A R +VL P++ A + E+ F Sbjct: 14 ATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFA 73 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVAS 141 + P+ D S + I RL + VV Sbjct: 74 SPSHAPLS------------FPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMP 121 Query: 142 VSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 V+A L+ + +L G ++ +L RL ++ YA RGTF VRG ++ Sbjct: 122 VAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGIL 181 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 DIFP +R+E F + E + FDPLT + + + + P + Sbjct: 182 DIFPPNLSA-PVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIILTD------- 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + ++A R K ++ ++ R + LE + Y G+E L Sbjct: 234 -GVLADIAPRLKGCCDDLEIPAN-----RRREILENLKSAVYFRGVEYLQPLLHPGL--- 284 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQI-----GGMYRGDRARKETLVEYGFRLPSALDNR 375 T+FDY P L ++D I + + G+ ++ + + R LD Sbjct: 285 --ETIFDYAPDASLALLDPQA--IQEAITTFGRELEDGEATARQNGLPHSPRQELYLDGE 340 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQ- 431 L+ + + V D + V TQ Sbjct: 341 QLRELMENRGRLELSGLLLEEPQG-----------PAVITIPCQDNTDLRVTVSKETTQA 389 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L +RQ RVL+ AE L E L + + + E D Sbjct: 390 LTPLSRSLRQWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAETVQGEAQGD 449 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 L+ + L G + E LV I + + G ++ G + Sbjct: 450 ASPDGVVTLLQGD-LSRGFRLLEARLVLIAEEELFGKR------VRRRGISEVRKKQILS 502 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + Y I+ G+ + + G + Sbjct: 503 SLAELKPGDHMVHVDHGIGL------YRGLQHISVSGVGGDFLLLEYNGGDKL------- 549 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ V + P+ + +L G+ + ++ + ++ +L ++ Sbjct: 550 --YLPVDRLALVQRYVGPEGSSPSLDKLGGVSWEKSKGKARKAIEELAGELLEIYAKR 605 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 64/457 (14%), Positives = 134/457 (29%), Gaps = 42/457 (9%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 D L+ P V + ++ A + Sbjct: 630 EETPDQLSAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTT 689 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q + E + E +E SRF + + + + L + +V +H Sbjct: 690 ILAQQHFETFHERLKEY--PVRVEALSRFRTP----KEQKAILERLKKGEIDIVIGTHRL 743 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + + + + ++ATP L Sbjct: 744 LQKDVAFKDLGLLIIDEE--------QRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYM 795 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTK----RM 458 S + D + T +D + VA ++L+ I + +V + Sbjct: 796 SMMGIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKR 855 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 AE + + E V H + E +++ GE ++L+ ++ GLD+P + + Sbjct: 856 AELIAALVPEAKIAVG--HGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTL 913 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + AD+ G + L Q GR R+ S + R R K + Sbjct: 914 IVDHADRFGLSQ----LYQLRGRVGRSSQRGYAYLLIPGEGS----LTSDARERLKILQD 965 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 E G G D+ G + + ++ + L++ I Sbjct: 966 ISELG---AGFRIATHDMEIRGAGDMLGSRQSGTVI-------EIGFELYNQMLEETICR 1015 Query: 639 LEGL--MMQHAQNLEFEEAAQIRD-QLHQLRELFIAA 672 + G + Q + + A I + + + + Sbjct: 1016 MRGEEMIEQVEPEINLKVPAFIPETYVRDTGQRLVIY 1052 >UniRef50_B7XJP8 DEAD box RNA helicase p68 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJP8_ENTBH Length = 443 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 55/399 (13%), Positives = 113/399 (28%), Gaps = 42/399 (10%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ + + + + F + Y+ ++ + + Sbjct: 51 PTPIQSQGWPMAL-SGRDMIGIAATGSGKTFSFLVPA---YIHAADQPSLREGDGPIVIV 106 Query: 269 ARRKVLLENNKLLEEQRLTQR--TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L+Q + G + + P L Sbjct: 107 LAPTRELATQIGNVATELSQLKIFNHLKPLCVYGGANIFPQKKALVNGIEILIATPGRLI 166 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + + + + M L + + + Sbjct: 167 DLHNQGFCPLNRCTFLVLDEADRM-----------------LDMGFEPQLNQIIPKINSH 209 Query: 387 PQTIYVSATPGNYELEKSGGDV-VDQVVRPTGL--------LDPIIEVRPVATQVDDLLS 437 QT+ SAT + D + G ++ +E+ + LL Sbjct: 210 RQTLMWSATWPKEVKSLAYRYTSQDAIQVTVGDEELKVNEKIEQRVEIVSNNDKEKKLLY 269 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + RVL+ K + L +L E+ R LH D R I + + G Sbjct: 270 TLQDF--RDARVLIFCNKKSTCDKLERFLLENRFRGVALHGDKSQHVRDVIFDNFKKGRD 327 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGD 555 +L+ ++ GLD+ ++ LV D + + +GR AR GKA+ + Sbjct: 328 PILIATDVAARGLDVKDIHLVINYDLPT-----NLEDYVHRVGRTARGTAKEGKALTFFS 382 Query: 556 KITPS-MAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 S +AK E ++ + G N+ Sbjct: 383 LEEDSGLAKRFIELLKKGNVTIPDELLNIKPKYGNNRSK 421 >UniRef50_UPI00006CDDA3 CLN3 protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CDDA3 Length = 1138 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 70/469 (14%), Positives = 135/469 (28%), Gaps = 28/469 (5%) Query: 217 FDEEVERLSL---FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR-- 271 FDEE+ R F+ T +P V + L Sbjct: 69 FDEELMRQITKLGFEKPTQIQCQALPCGLSG--RDIVGVAKTGSGKTVSYLWPLLIHILD 126 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + LE N+ L + ++ E + Y+ + GE + L A Sbjct: 127 QRELEKNEGPIGLILAPTRELCQQVYTESKRYAK--IYNISVGALLGGENKHEQWKMLKA 184 Query: 332 DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +++ + I R + E + + + QT+ Sbjct: 185 GVEILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDRQTL 244 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRA 443 +AT + + V G + + + D + Sbjct: 245 LFTATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFKDQWILNNLNLC 304 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +VL+ L+E +++ LH D ER +II + + ++L+ Sbjct: 305 LQKGKVLIFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAK-NLLIA 363 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPS 560 ++ GLD+PE+ V D + + I IGR R +G A Sbjct: 364 TDVASRGLDIPEIKTVINYDLP-----QDTDTYIHRIGRTGRAGATDGTAYSLILMSESK 418 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A + + + N E K LG + AK K + + + Sbjct: 419 FASDMLKVMEISGQPVPPNLEEVAMNDDQFKAQRLATKLGVDFAKGKDSSKLLKQALSRQ 478 Query: 621 DNVPMDMSPKALQQ--KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 N + K + +++ + Q + + + L L + Sbjct: 479 RNTKHGLGYKQEDELSIKDQIKADVDQDIKKQKISQTQAPPPPLFDLEQ 527 >UniRef50_D2V4T2 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V4T2_NAEGR Length = 452 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 58/452 (12%), Positives = 127/452 (28%), Gaps = 43/452 (9%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEE-----VERL-SLFDPLTGQIVSTIPRFTIYP 245 R + ++ + I + F+ ++ + + + Sbjct: 6 EIRNKEDIKAFCSRKGAPIPKPITQFNHINFPHFIQNQFKEMNFKEPTAIQKQAWPIVMS 65 Query: 246 KTHYVTPRERIVQAMEEIKEE--LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + E + + L+ LT + +++ Sbjct: 66 GNDMIGLAETGSGKTLAFLLPGLMHVLAQKELKKGDGPIMVILTPTRELAIQIHGACENF 125 Query: 304 SGI-----ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRAR 357 ++ + ++ GE T + +++ + + G+ R Sbjct: 126 CNAFVPDSKDRALKIACLYGGEVRKTQIKECRSKPQVIIATPGRLLDFLQAGITNMKRCS 185 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV---VR 414 L E L + + + QT++ SAT + V + Sbjct: 186 YLVLDEADRMLDMGFNPQISQITSQVTPDRQTLFFSATWNRSVQSMAMSYVSKAEPHFIV 245 Query: 415 PTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTE 464 G ++ + ++ L + + E R LV TK+ + +TE Sbjct: 246 NIGSIETSANHRVKQSFLFIQESDKIARLTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTE 305 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L E G +H + ER ++ + R G+ +LV ++ GLD+ V V D Sbjct: 306 RLREAGWPSLSIHGERKQEEREWVLEEFRSGKTPILVATDVAARGLDVENVKYVINYDMP 365 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 S I IGR R G ++ + + + + E+ Sbjct: 366 H-----EIDSYIHRIGRTGRAGKEGNSVSFFTPEDVQLCTPLIKVLEEAEQDVP------ 414 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 K+ D+ K + + Sbjct: 415 ----DKLVKLRDLSTKSHGDLSIKEQRQKDKI 442 >UniRef50_UPI0001927315 PREDICTED: similar to topoisomerase (DNA) III beta n=1 Tax=Hydra magnipapillata RepID=UPI0001927315 Length = 1349 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 51/420 (12%), Positives = 113/420 (26%), Gaps = 48/420 (11%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ + + + F + + + Sbjct: 124 YNSGYKAPTPIQAQTWP-IAMFDRDVVSIAKTGSGKTLAFLLPAYMKINL------RRSQ 176 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 L L LE ++ + G + + Sbjct: 177 GTISVLVLAPTRELATQIQLEAEKFGSVAGY-YSACAYGGAPKRNQLQAINSGISVLVAT 235 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D+L ++ + + ++ + + L + + Sbjct: 236 PGRLNDFLESNEVNLSSVFYLVLDEAD-----------------RMLDMGFEPQIRTIIR 278 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---------------DPIIEVR 426 QT+ SAT + + V G++ +I + Sbjct: 279 CLPRKRQTLMFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLN 338 Query: 427 PVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +L++ I+ + + VL+ K + LT L G +H D D R Sbjct: 339 SGEDKDGELINLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYR 398 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + R G ++V +L G+D+ +S V D S + IGR R Sbjct: 399 EKTLAAFRDGSRPIMVATDLASRGIDVRGISAVINYD-----LANSTEDYVHRIGRTGRA 453 Query: 546 V-NGKAILYGDKITPSMAKAI-GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 +G++ + + + KAI + Q + + ++ + Sbjct: 454 GMSGESFTFLTRSNDDIWKAIGIVEVMAKTGQYPPPAVQELINRVKMRQEQNKERRAAEN 513 >UniRef50_C1E750 DEAD/DEAH box helicase n=4 Tax=Mamiellales RepID=C1E750_9CHLO Length = 611 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 55/403 (13%), Positives = 118/403 (29%), Gaps = 34/403 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + V + + F + V + Sbjct: 176 YESPTPIQAQAWPIAV-KGKDVIAIAKTGSGKTCGFLLPALAKIV-------KQGATAAP 227 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 ++ + L + +++ +E + G Sbjct: 228 DMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFCPA--AGAKVVTLYGGASKGDQ 285 Query: 326 FDYLPADGLLVVDESHVTIPQI------GGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 L + ++V + A L E L + + K Sbjct: 286 LRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRMLDMGFEPQIKKI 345 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG----------LLDPIIEVRPV 428 + A QT+ +AT + + + + D + G + IE+ Sbjct: 346 IKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANKSITQTIEIVTE 405 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERME 487 ++D ++ +++ R +V TKR + + ++ G R +H D D ER Sbjct: 406 DQKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMKAMGLRSAGAIHGDKDQAEREY 465 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + R G+ +LV ++ GLD+P V++V + D + IGR R Sbjct: 466 SLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPL-----QVEDYVHRIGRTGRAGK 520 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 GKA + + A+ + + E++ Sbjct: 521 EGKAHCFFTEEDAGAARELVQILEGAEQEVPERLREMADRSRK 563 >UniRef50_Q3AZR1 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus RepID=Q3AZR1_SYNS9 Length = 458 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 119/443 (26%), Gaps = 19/443 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++EL E V + L+ + + + + + + + Sbjct: 28 QLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLR 87 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + T+ + + G L Sbjct: 88 AEDKPKRYQVHSLVLTPTRELAAQVEASAKAYTKY-LALRSDAVFGGVSIRPQVKRLQGG 146 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + I M R D + L E L K E+ Q + Sbjct: 147 VDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMM 206 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAAINE- 447 SAT + + G + D V + + IE + + + N+ Sbjct: 207 FSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKTNKW 266 Query: 448 -RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +VLV TK A+ + + L R +H + R + + G+ +LV ++ Sbjct: 267 KQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVATDIA 326 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ ++ V LD + IGR R G AI + KAI Sbjct: 327 ARGIDIHQLPYVINLDLPNV-----AEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAI 381 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + + + L G + ++ + Sbjct: 382 EKFIGNPLPKVDVVGFEQ------KILKAEPLKQGGQRQRRPSQSARPGQKAKTNHASSQ 435 Query: 626 DMSPKALQQKIHELEGLMMQHAQ 648 + +G + Sbjct: 436 QRRSDWRKSSNRSTQGERRTRQR 458 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 59/385 (15%), Positives = 112/385 (29%), Gaps = 40/385 (10%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 + S+ ++ + +E F++ + Sbjct: 40 VDLGYSEPTPVQEKAIPVVLEG-RDLIAAAKTGTGKTAAFSLPTLDQLRYRADDEG---- 94 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L + R ++ G G + Sbjct: 95 --PLMVIVTPTRELAQQIADTCAPI-ARRTNHSTVVLLGGVGYGPQIKKLRAGADIIIAT 151 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D + K L E L + + + Sbjct: 152 PGRLLDLMRQGAA-----------------DLGNVEKLVLDEADRMLDMGFWPQVSEIVD 194 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDD 434 QT+ SAT + + + D + +D + + Sbjct: 195 AIPAERQTLLFSATIDRSQDKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPAL 254 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L S +R+ RV+V T TK A++ T+ L + G +H+D +R + + R Sbjct: 255 LNSFVRE--RGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFRE 312 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G+ VLV ++L G+D+PEV V D + IGR R G A+ + Sbjct: 313 GKTHVLVATDVLSRGIDVPEVDYVINYDLPMM-----PEDYVHRIGRTGRAGARGYAVSF 367 Query: 554 GDKITPSMAKAIGETERRREKQQKY 578 T ++ K+I + + + + Sbjct: 368 VTPDTRNLLKSIQKFIDQTIEVLDF 392 >UniRef50_B3QTY3 DEAD/DEAH box helicase domain protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QTY3_CHLT3 Length = 431 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 59/386 (15%), Positives = 110/386 (28%), Gaps = 15/386 (3%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + L T + + + + R Sbjct: 9 ISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILHRLGE 68 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ ++ G P L + Sbjct: 69 NRSYDIRAPRALILTPTRELALQIDNNIRLYARYLR-LRTGVIMGGVPAHPQIKMLRRNP 127 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I D+ + L E L + + E + QT+ Sbjct: 128 DILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQTLLF 187 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIRQRAAIN 446 SAT + + + V + + + +LL + + Sbjct: 188 SATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKE-NDI 246 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +R LV T TK+ A + E L G +HS R + G+ +VLV ++ Sbjct: 247 KRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVATDIA 306 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+ +S V + + + IGR AR +G A+ + D M K I Sbjct: 307 ARGIDVDGISHVINYELP-----DDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGI 361 Query: 566 GETERRREKQQKYNEEHGITPQGLNK 591 + + N H I ++K Sbjct: 362 EKLTKSSIAICDNNPFHSIAVASMHK 387 >UniRef50_C8W8S2 DEAD/DEAH box helicase domain protein n=2 Tax=Atopobium RepID=C8W8S2_ATOPD Length = 450 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 94/395 (23%), Gaps = 57/395 (14%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP---------------- 252 ++ V F + Sbjct: 26 PTPVQTAAIP-AVLAGKDVVASAQTGTGKTAAFMLPTLQRIAVEKHDKAEKPDGKRNAAA 84 Query: 253 ---------RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +R L L + + T ++ G Sbjct: 85 ERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNVAKSVCASTGQQA-VIVTGGAH 143 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + P L D L + D + + + M Sbjct: 144 YKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVLVLDEADRML------------ 191 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI- 422 + E A QT+ SAT + D Sbjct: 192 -----DMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIARTGQTA 246 Query: 423 --IEVR---PVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 IE Q LL + ERVLV TK + + + L+ G +V + Sbjct: 247 ATIEQHLCSVTQGQKPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAGLKVDVM 306 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H+D R + + R +LV +++ G+D+ + +V D + Sbjct: 307 HADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPL-----DPEDYV 361 Query: 537 QTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 IGR R G+A + + + I + Sbjct: 362 HRIGRTGRAGATGQAYTFMGPDEVTPLREIEYFTK 396 >UniRef50_O22907 DEAD-box ATP-dependent RNA helicase 24 n=4 Tax=Embryophyta RepID=RH24_ARATH Length = 760 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 58/390 (14%), Positives = 111/390 (28%), Gaps = 22/390 (5%) Query: 217 FDEEVER-LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKV 273 F ++ + + + + + + + Sbjct: 235 FSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQP 294 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ ++ + ++ E S Y +S G F L A Sbjct: 295 ELQRDEGPIGVICAPTRELAHQIFLEAKKFSKA--YGLRVSAVYGGMSKHEQFKELKAGC 352 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + RA L E + + QT+ Sbjct: 353 EIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLF 412 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVA-TQVDDLLSEIRQRAA 444 SAT + + + D + G + ++ V P ++ LL ++ Sbjct: 413 SATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMID 472 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + VLV K +++ L + +V LH D D RME ++ + G VL+ + Sbjct: 473 EGD-VLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATD 531 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMA 562 + GLD+ + V D + + IGR R +G A + A Sbjct: 532 VAARGLDIKSLKTVVNYDI-----AKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFA 586 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKK 592 + + + G K Sbjct: 587 GELVNSLVAAGQNVPPELTDLAMKDGRFKS 616 >UniRef50_C9RIQ5 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIQ5_FIBSS Length = 802 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 68/481 (14%), Positives = 142/481 (29%), Gaps = 35/481 (7%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E +E + L T + + + + + L +R Sbjct: 129 LGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRIN- 187 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 N + T+ +++ ++ + + G+ L Sbjct: 188 ---FNGRETSMLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKA 244 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I I + L E L + Q Sbjct: 245 SIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALF 304 Query: 393 SATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + + + + +++ L + Sbjct: 305 SATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVL--EGEE 362 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + VL+ TK+ ++ E LE G V L+ D+ R I L++G+ D++V ++ Sbjct: 363 FDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDV 422 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ +SLV D S + IGR R G AIL+ M K Sbjct: 423 AARGIDVDRISLVVNYDIP-----YDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKT 477 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 I + R+ + I+ + ++ + ++ + + + + Sbjct: 478 IEKATRQPIDVMEMPTSEQISKKRVDAFKAKVK---SVVSYGELDQFKELVRALAAEGCN 534 Query: 625 MDMS------------PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 M + + + ++ NL EA + R + + F+ Sbjct: 535 MKDGVALEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGE 594 Query: 673 S 673 S Sbjct: 595 S 595 >UniRef50_Q8I5E7 DEAD-box helicase n=5 Tax=Plasmodium RepID=Q8I5E7_PLAF7 Length = 742 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 105/331 (31%), Gaps = 39/331 (11%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L L E + ++ + G + + P L Sbjct: 431 LILLPTRELCLQVLDE-IKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L + ++ +V I + + + + K Sbjct: 490 DFLENGNINLLKCIYVVIDEADRLLD-----------------MGFEKQLRKIMTQVNKN 532 Query: 387 PQTIYVSATPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQVDDLLS 437 Q ++++AT + + D V G ++ + + LL Sbjct: 533 KQLLFLTATWPEQVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLD 592 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +++ N ++L+ TKR ++L + L H +H D ER I+ + + Sbjct: 593 WLKENYENN-KILIFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRC 651 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD- 555 ++LV ++ GLD+ +S+V D + I IGR R GK+IL+ Sbjct: 652 NILVATDVASRGLDIKNISVVINYDIPN-----TIEDYIHRIGRTGRAGKKGKSILFFSY 706 Query: 556 ----KITPSMAKAIGETERRREKQQKYNEEH 582 AK + + + + + Sbjct: 707 DYYMPQKLKFAKELIKLLNKTNQTVPPQLKE 737 >UniRef50_Q10202 ATP-dependent RNA helicase dbp3 n=1 Tax=Schizosaccharomyces pombe RepID=DBP3_SCHPO Length = 578 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 116/391 (29%), Gaps = 49/391 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F I + + + Sbjct: 185 YKEPTPIQAATWPYLL-AGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKS-----VPR 238 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L L Q T ++ G + + + G P L Sbjct: 239 VLVVSPTRELAIQTYENLNSLIQGT-NLKAVVVYGGAPKSEQARAAKNASVIIG-TPGRL 296 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + ++ + + L + + Sbjct: 297 LDLINDGSIDCSQVGYLVLDEADR-----------------MLDTGFEQDIRNIISHTPD 339 Query: 386 -----APQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 + QT++ SAT + + D V G + I+E+ Sbjct: 340 PTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSK 399 Query: 433 DDLLSEIRQRA----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + +L + ++ ++++L+ L K+ A + L V +H D+ R++ Sbjct: 400 ERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQA 458 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N 547 + D + G+ VLV ++ GLD+P+V LV + + + IGR R Sbjct: 459 LNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPL-----TIEDYVHRIGRTGRANTK 513 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKY 578 G AI + S A + R+ ++ Sbjct: 514 GTAITFFTPQDKSHAGELVNVLRQAKQDIPE 544 >UniRef50_D1BSR4 DEAD/DEAH box helicase domain protein n=5 Tax=Actinomycetales RepID=D1BSR4_XYLCX Length = 712 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 63/479 (13%), Positives = 128/479 (26%), Gaps = 50/479 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + A++ + + + F + + + + Sbjct: 69 FTTPSAIQAQAIPALL-GGRDITGVAQTGTGKTAAFGLP-----LLASVEAHRGTRPTVQ 122 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + G + + P + Sbjct: 123 ALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRDGVHVVVGTPGRV 182 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L GL++ D + + + M L K + Sbjct: 183 IDHLERGGLVLDDARFLVLDEADEM-----------------LRMGFAEDVEKIFSYAPT 225 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSE 438 Q SAT + + D V + + P +V L Sbjct: 226 QRQVALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRI 285 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + + +V T T+ AE++ L E G + D+ ER +I+ LR G D Sbjct: 286 LAT--SDADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALD 343 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ GLD+ + LV D R + + IGR R G+A+ + Sbjct: 344 VLVATDVAARGLDVDRIGLVVNFDIP-----REAEAYVHRIGRTGRAGRTGRAVSFVTPH 398 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-GQNIAKTKAKGRGKSRP 616 K I T + ++ ++ + + A + Sbjct: 399 ERGKLKFIENTIKVSLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVT 458 Query: 617 IVEPDNVPMDMSPKALQQKIH-----------ELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + + KA+ ++ + AA+ + + Sbjct: 459 TGDGEEAGVVDPTKAVDLAATLLALAVGDDGPRARAEQEEYEREQAEGRAARQARETRK 517 >UniRef50_D0LYA3 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYA3_HALO1 Length = 908 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 79/503 (15%), Positives = 138/503 (27%), Gaps = 80/503 (15%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 +L+ L E+ Y R + ++ +F + Sbjct: 72 ELLQALEEMGYDR-------------------------PMPVQAAVFQP-LMNGRDVMVQ 105 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I H + L L E +L + Sbjct: 106 SRTGSGKTAGFGIPVVQHIDAASKGAQ--------ALILAPTRELALQVSREIAQLAKP- 156 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG- 349 + G P D L A +V + + Sbjct: 157 ------------------KGLHIEPIYGGAPIKPQMDALAAGAQVVSGTPGRVLDHLRRK 198 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--LAPQTIYVSATPGNYELEKSGGD 407 R L E L + E QT+ SAT + + Sbjct: 199 TLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTVLFSATIPDEIQRIARRH 258 Query: 408 VVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + D +D V + DLL +R A + ++ T+ Sbjct: 259 MTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLR--AESPDSAIIFCNTREDTN 316 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + ++L+ G + SD+ +R +++ +R D LV ++ G+D+ ++S V Sbjct: 317 TVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDVAARGIDISDLSHVIN 376 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ--QK 577 F S + GR R G AI + + R ++ Sbjct: 377 Y-----TFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLIYKIRPEERDLP 431 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP---KALQQ 634 NEE GI +G + V L + A R +R I + D + L Sbjct: 432 TNEEMGILDEGARFERVAALVSEE----PGADSRALARRIWQSDEGERIFGALVQRVLAD 487 Query: 635 KIHELEGLMMQHAQNLEFEEAAQ 657 E A+N + EA + Sbjct: 488 APSERSKRSRPKAENTQRSEARR 510 >UniRef50_Q1QYG3 DEAD/DEAH box helicase-like protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QYG3_CHRSD Length = 568 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 63/417 (15%), Positives = 122/417 (29%), Gaps = 19/417 (4%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 + + L + L T ++ + + + Sbjct: 5 PVASPTFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGK----T 60 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A L+ + + + T+ + + G + G+ Sbjct: 61 AAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYRE 120 Query: 325 LFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L ++V I + + D L E L + + Sbjct: 121 QLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDT 180 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIR 440 Q ++ SAT + +VD + IE R V + L + Sbjct: 181 PKDAQRVFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALS 240 Query: 441 Q--RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +V T+ L E L G L D+D R + L+ G+ D Sbjct: 241 RLLEVEPVDAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVD 300 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VL+ ++ GLD+P ++ V D + + IGR R G AI + Sbjct: 301 VLIATDVAARGLDVPRITHVFNYDLP-----QDAEAYTHRIGRTGRAGRTGVAITFAGGR 355 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQG---LNKKVVDILALGQNIAKTKAKGR 611 + + ++ ++ + +E I K+V+D LA G + + G Sbjct: 356 EQRRVRDMERVTGQQMQEVELPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGL 412 >UniRef50_A8L2H9 DEAD/DEAH box helicase domain protein n=2 Tax=Frankia RepID=A8L2H9_FRASN Length = 671 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 69/468 (14%), Positives = 125/468 (26%), Gaps = 34/468 (7%) Query: 131 LERRDVVVVASVS--AIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 L VV+ S A L P H+ G + R+ R L Sbjct: 17 LSWAQPVVITPPSHQAADRLAPPRHRAAGAARHIASGFSVGHRSEQTRSVPL---SVTST 73 Query: 188 FQRGTFRVRGEVIDIFPAES---DDIALRVELFDE------EVERLSLFDPLTGQIVSTI 238 + PAE+ D F E V L+ + + + Sbjct: 74 QTPNNEPISDGSDTTSPAETPSLADTPSLAPTFAEIGVRAETVAALAEVGIIRPFAIQEL 133 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 +T + + E + + T+ + Sbjct: 134 TLPLALERTDIIGQARTGTGKTLAFGIPIVQVVTAPDEGADGRPQALVVVPTRELCVQVT 193 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRAR 357 +G + G L A +VV + R Sbjct: 194 ADIARAG-LGRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPGRLLDLARQKALDLAGVR 252 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR--- 414 L E L + F T+ SAT + + + V Sbjct: 253 ALVLDEADEMLDLGFLPDVERILAFLPEQRHTMLFSATMPGPVISLARRFMTRPVHVRAE 312 Query: 415 ------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 + +++ L ++ + +V T+R A+ + E L Sbjct: 313 QPDEGRTVPNTQQHVFRAHALDKMEVLARVLQAESR--GLAMVFVRTRRTADKVAEDLAR 370 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +H D+ +R + +R R G+ DVLV ++ G+D+ V+ V Sbjct: 371 RGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVGGVTHVVNYQCP---- 426 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQ 575 E + + IGR R +G A+ + D + ++ Sbjct: 427 -EDEHAYLHRIGRTGRAGGSGVAVTFVDWDDLPRWTLVNRALALPFEE 473 >UniRef50_A2DH37 DEAD/DEAH box helicase family protein n=2 Tax=Trichomonas vaginalis RepID=A2DH37_TRIVA Length = 541 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 54/425 (12%), Positives = 113/425 (26%), Gaps = 41/425 (9%) Query: 177 AELQYARNDQAFQRGTFRVRGEVIDI--FPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 E G +R EV+ ++ + + Sbjct: 111 VEAGNHIPPIIDFPGC-GIRNEVLRNVAHNGYKVPTPVQRYSIP-YILNGEDLIVTSQTG 168 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 F + T + + L E ++ + T Sbjct: 169 SGKTAAFMLPVITQLIGTCHSPNPSCVA------LCPTRELAIQIFEETRKFCKGTD-LK 221 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 G + + P L D L + + + + + + M Sbjct: 222 TTCVFGGAPITEQIRNLSRGIDIVIATPGRLIDILKQHCITLSEVRFLILDEADRMLDMG 281 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVV 413 + V G+ +P A QT+ SAT + + + Sbjct: 282 FEPQMQEVINGWDMPPA-------------DDRQTMLFSATFPDAVRNLARDFMRPKYCR 328 Query: 414 RPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G ++ + +LL I++ + LV K + + +L Sbjct: 329 ISVGMQDAPKSIEQRFIYCSEMDKFSELLGVIKEV---DGPTLVFAERKVSVDRIERFLY 385 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + V +H + +R+ +R G +++V ++ GLD+ V+ V LD Sbjct: 386 DEHTAVVAIHGERQMDQRLAALRQFTTGRANIMVATDVASRGLDISNVAHVINLDLPT-- 443 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + IGR R G A + ++ + + + R + Sbjct: 444 ---DLDTYTHRIGRTGRAGKHGLATSFFNESNNAFLAQLIQHLRSKNLPIPE-GLEEYEA 499 Query: 587 QGLNK 591 G + Sbjct: 500 SGALR 504 >UniRef50_C6Q9Z2 DEAD/DEAH box helicase domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6Q9Z2_9RHIZ Length = 657 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 55/380 (14%), Positives = 104/380 (27%), Gaps = 39/380 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++V+ ++E L + + Sbjct: 46 YVTPTPIQVQALPPQLEGRDL----------------------LGMAETGSGKTATFVLP 83 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L E + T+ +++ R + G Sbjct: 84 LLQKIASQNSEPAPKQVLALVLAPTRELAIQIDQEVASLARNMRIRR-AVVLGGVSKGPQ 142 Query: 326 FDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L ++V + I R L E K Sbjct: 143 INALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLP 202 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLS 437 A +T SAT + + + + +D + + + L + Sbjct: 203 EARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHT 262 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + A +RV+V T TKR A+ + E L G H + R + D +G Sbjct: 263 ILADEA--CKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHI 320 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 VLV ++ G+D+ ++ V D + + +GR AR +G AI D Sbjct: 321 RVLVATDIAARGIDVSNITHVVNFDMPL-----DPETYVHRVGRTARKGNSGIAISLCDP 375 Query: 557 ITPSMAKAIGETERRREKQQ 576 AI +++ + Sbjct: 376 GERQEITAIERMMKQKLEVI 395 >UniRef50_C1EA42 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EA42_9CHLO Length = 754 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 106/379 (27%), Gaps = 24/379 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + +++ + + + F + + + Sbjct: 342 YAKPSPIQMASIPIGLLK-RDVIGIAETGSGKTCAFVVPMLAYIQELPPMTDEVAALGPY 400 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + Q G + + P + Sbjct: 401 ALVMAPTRELAQQIEEETVKFAQ-FMNYRVASVVGGQSIEEQGFKLRRGCEIVIGTPGRI 459 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA- 384 D L ++ +++ + + M + V S + + + Sbjct: 460 IDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSMSAESLKPEEEAEKIDEQGL 519 Query: 385 ------LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQ 431 T SAT + + + + V G + I++ + Sbjct: 520 EASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSAGKTSDLIKQIVQWTTSNQK 579 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L E+ + + ++ TKR+ + ++ + G V +H +R E +R Sbjct: 580 PAQL--ELVLSQYPDTQAIIFVNTKRVVDHVSNLCFKMGYSVGAIHGGKSQDQREESLRG 637 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + GE+D+LV ++ G+D+ + LV + + IGR R G A Sbjct: 638 FKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLV-----IENYTHRIGRTGRAGRQGTA 692 Query: 551 ILYGDKITPSMAKAIGETE 569 + + + + E Sbjct: 693 VSFLTSEDTDVMYELKELL 711 >UniRef50_A3WBD4 DNA and RNA helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WBD4_9SPHN Length = 497 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 46/451 (10%), Positives = 113/451 (25%), Gaps = 22/451 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ + + + + + + Sbjct: 41 LGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMIDVMAA 100 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + L + ++ + L G L Sbjct: 101 GRRRALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALL--IGGVQMGDQLKTLDEGV 158 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + + + E L + QT+ Sbjct: 159 DVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQTMLF 218 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINER- 448 SAT + + + + T I V + + A ++ Sbjct: 219 SATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLANDQVE 278 Query: 449 -VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ K +L ++L+ G +H D+D R++ + + G+ ++LV ++ Sbjct: 279 TAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVASDVAA 338 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 GLD+ VS V D + IGR R G+A + Sbjct: 339 RGLDIKGVSHVFNFDTPWH-----PDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVE 393 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + K + + ++ D A + + D Sbjct: 394 KLTGAKIKV--------FGKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDD 445 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + E + ++ ++ + Sbjct: 446 EGDAPRKPRRESAEDKPARKSRPRRRDDESD 476 >UniRef50_Q8H0U8 DEAD-box ATP-dependent RNA helicase 42 n=11 Tax=Viridiplantae RepID=RH42_ARATH Length = 1166 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 122/422 (28%), Gaps = 30/422 (7%) Query: 205 AESDDIALRVELF------DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 D+ ++ + + ++ + + + T I + + Sbjct: 519 VHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSG 578 Query: 259 AMEEIKEELAARR--KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + +E + + ++ +++ S Sbjct: 579 KTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP--LGIRCVPV 636 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSAL 372 G L +VV I + G + R + E Sbjct: 637 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGF 696 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEV 425 + + + + QT+ SAT + + V G + ++EV Sbjct: 697 EPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEV 756 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 RP + + LL + + + ++LV ++ + L + + LH D +R Sbjct: 757 RPESDRFLRLLELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDR 815 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I D + ++L+ ++ GLD+ E+ LV DA + +GR R Sbjct: 816 ESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNH-----YEDYVHRVGRTGRA 870 Query: 546 V-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G A+ + + A + + E+ ++ G KV + Sbjct: 871 GRKGCAVTFISEDDAKYAPDLVKALELSEQ--PVPDDLKALADGFMVKVKQGIEQAHGTG 928 Query: 605 KT 606 Sbjct: 929 YG 930 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 105/652 (16%), Positives = 219/652 (33%), Gaps = 61/652 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I +++ + Q + +TGS K A +I +P +++ ++ LA + +++ + Sbjct: 33 IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P V Y PSS+ + + R+ + + VV Sbjct: 92 LPGEDVL-------------YFPSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVV 138 Query: 141 SVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ + + +L L G D + + ++L+ Y R D +G F +RG + Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI P + + LRVE FD+EV+ + +FD T + T+ I P V E + + Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E++ + + L + + +++ ++ Q E + I Y L Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLE----- 311 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 EP F L D +++DE Q+ + + G S D Sbjct: 312 EPLEPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYE 371 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + + +T + P+ + L+ EI Sbjct: 372 QFLRYGEKHPFVLISTLPREIPGVA------PKRIFNLNARPL---TGFMGKTGILVDEI 422 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V + + AE + + L + G ++ E+ ++ G V Sbjct: 423 EHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALA----------KKHELHEPVQEG--GV 470 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 V + L +G ++P L+ + +A+ R ++ + A G+ + + D Sbjct: 471 YVYSSSLDQGFELPLSKLIVLSEAEIYKRERKAA--VKR--KKAPEKTGQRLQFADLKPG 526 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + ++ I G+ K + GQ+ + + Sbjct: 527 DFVVHVHHGIGQFMGIER------IAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 D + K+++L G + + ++ L +L A Sbjct: 581 SDAETL--------PKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREA 624 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 73/455 (16%), Positives = 134/455 (29%), Gaps = 37/455 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F+E+ D + + P + + ++ A Sbjct: 638 QEFEEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSK 697 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q E +GY I+ SRF S + + L + Sbjct: 698 QVAVLVPTTILAQQHFNTFQERF--MGYPVSIQMLSRFRSA----KEQKLILQGLKEGSI 751 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H + + + + + +SA Sbjct: 752 DIVVGTHKLVSDSIKFKDLGLLIVDEE--------QRFGVAHKEKLKTLKANVDVLTLSA 803 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTT 453 TP L S V D + T D VA + D + IR+ +V Sbjct: 804 TPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVH 863 Query: 454 LTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E + +L + H + E + + E DVLV ++ GLD Sbjct: 864 NRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLD 923 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 MP V+ + I +AD+ G + L Q GR R+ + K + E + Sbjct: 924 MPNVNTLIIDEADRLGLGQ----LYQLRGRVGRSNRRAYSYFLY----KPQKVLTEVAEK 975 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + E G GL + D+ G + + ++ + Sbjct: 976 RLAAIREFTEFG---SGLKIAMRDLEIRGAGNLIGAQQHG-------HLAALGFELYSQM 1025 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 L++ + EL+G ++ E Q+ L + Sbjct: 1026 LKEAVQELKGEQVEEKIETSIE--VQVDAYLPDIY 1058 >UniRef50_D2PLC1 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PLC1_9ACTO Length = 815 Score = 255 bits (651), Expect = 4e-66, Method: Composition-based stats. Identities = 55/425 (12%), Positives = 121/425 (28%), Gaps = 38/425 (8%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA-------AR 270 E + L + + + + T + L Sbjct: 3 PEICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEP 62 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L + +T + +++ +L S + + + G + L Sbjct: 63 DYEELAAPGKPQALVVTPTRELTIQVAKDLTTASTV--RTVRILTIYGGVAYEPQLEMLK 120 Query: 331 ADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + +VV + + + L E L + QT Sbjct: 121 SGVDVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQT 180 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRP---------TGLLDPIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + + + + + ++ Sbjct: 181 MLFSATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQ 240 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A RV++ TKR A LT+ L + G + +H D++ R + R + DVL Sbjct: 241 --AEDRGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVL 298 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 + ++ G+D+ V+ V E++ I IGR R +G A+ + D Sbjct: 299 ICTDVAARGIDVEGVTHVINNTCP-----EDEKAYIHRIGRTGRAGASGIAVTFVDWADV 353 Query: 560 SMAKAIGETERRREKQQKY-----------NEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + K I + + + + D + +++A Sbjct: 354 TRWKTINKALDLPYDEPQEIYSTSPELYHDLGIPTSAKGRIKAAREDKPERDRPPRRSEA 413 Query: 609 KGRGK 613 + Sbjct: 414 EAGSS 418 >UniRef50_A6DIU5 Probable ATP dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIU5_9BACT Length = 537 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 41/397 (10%), Positives = 105/397 (26%), Gaps = 41/397 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + + F + + + + L Sbjct: 24 EPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQKI--------EPGLKKPQAL 75 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + EE + + + + G + + P Sbjct: 76 ILCPTRELAIQ-VNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVDLVVATPGRCIH 134 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ L + ++ + + M K + Sbjct: 135 FIEDGKLELDSLEYLVLDEADEMLNMGFV-----------------EDVEKVLKASPDDR 177 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + +D ++ + L + Sbjct: 178 TVLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMD 237 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TK E ++ L G Y+H D+ R +++ R +L Sbjct: 238 LEKDFYG--IIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + ++ G+D+ ++S + S + IGR R G AI Sbjct: 296 IATDVAARGIDVTDLSHIVN-----FSLPEQFESYVHRIGRTGRAGKTGTAITLITPKER 350 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 S I + + +++K + + K ++ Sbjct: 351 SKMSFIEKKTGAKTERRKLPFGEEMIKLRIQKLSKEL 387 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 255 bits (651), Expect = 5e-66, Method: Composition-based stats. Identities = 115/671 (17%), Positives = 225/671 (33%), Gaps = 78/671 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 AF + E +R L L DG A +LG K I + A +V+ ++ Sbjct: 6 RAFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEK 64 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QL E++ F Y P+ D + + + + R+ A + Sbjct: 65 RARQLAEELEFFTEN---------------VFYYPAKDLLFYQSDIRSNVLTRQRMQAVE 109 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A+ + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 110 ALRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARV 169 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI---VSTIPRFTIY 244 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + + I Sbjct: 170 EHPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIV 228 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V E + + +E I+ + E+ K E R+ +E + Sbjct: 229 PSAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQ 288 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E++ + + + +L DY+P DG++ +D + + +E Sbjct: 289 QVESHLTYFTDQTL-----SLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEE 343 Query: 365 GFRLPSALDNRPL-KFEEFEALAPQTIYVSATPGN----YELEKSGGDVVDQVVRPTGLL 419 G+ LP + + + + + +SA G E + G + Sbjct: 344 GYILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGLEVRE------HFHIRIRQGSV 397 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + LL ++R+ +++ ++ A L + L + V Y Sbjct: 398 --------YNNSYELLLKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFY---- 445 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 T + ++ E +++V L G ++ + V + + D G R R Sbjct: 446 --TEDPEHEVK-----EAEIMVTRGSLSAGYELTDAGFVLLTEEDLFGGRRKRRKRG--- 495 Query: 540 GRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 R+ G+AI + Y I + K + I Sbjct: 496 ---RRHREGEAIASFAQLHEGDYV------IHENHGLGIYRGMEKIEVDQVTKDYIKIEY 546 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 A + D + A + +++ L ++ + Sbjct: 547 ---------ADSGILYILASQMDLLQKYAGADARRPRLNSLGSQEWSRTKSRVKRAVESV 597 Query: 659 RDQLHQLRELF 669 +L +L + Sbjct: 598 ARELVELYAVR 608 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 62/443 (13%), Positives = 133/443 (30%), Gaps = 40/443 (9%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + + ++ A ++ + Q ++ Sbjct: 646 KKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGKQVVYLVPTTILAQQHYDTFVQR 705 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M G+ R + L + + +V +H + + Sbjct: 706 MAPYPIKVGLLCRFRNKT------QQAQTVSELASGRVDIVIGTHRALSRDVVFRDLGLL 759 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + R + + + +SATP L S + D + Sbjct: 760 IIDEE--------QRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILDE 811 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--V 473 ++ V D+++ + + A ++ D+T L++ V Sbjct: 812 APMERTPIQTFVFEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQKLLPEAHV 871 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y H + I+ D GE D+LV ++ GLD+ V+ + I DAD G + Sbjct: 872 AYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADNMGLSQ--- 928 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 L Q GR R+ A + + K E +R K + G G + Sbjct: 929 -LYQLRGRVGRSNR-TAYAFFMYRRGKLLK---EVAEKRLLAIKEFSDLG---SGFKIAM 980 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM----QHAQN 649 D+ G +++ ++V D+ K L + + + +G + + + + Sbjct: 981 RDLEIRGAGNVLGESQSG-------HMESVGYDLYCKMLGEAVRQEKGEEIYEPFETSVD 1033 Query: 650 LEFEEAAQIRDQLHQLRELFIAA 672 L+ + A + + Sbjct: 1034 LDMD-AYLPESYVADAGQRMEIY 1055 >UniRef50_B3CMR4 ATP-dependent RNA helicase, DeaD/DeaH box family n=11 Tax=cellular organisms RepID=B3CMR4_WOLPP Length = 408 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 111/371 (29%), Gaps = 42/371 (11%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++V+ ++ + F I + I L Sbjct: 25 PTPIQVQAIPLALQGKDILG-SAQTGTGKTLAFAIPLVAKLMNEP--------SIGSALV 75 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + E ++L ++ + G + + P + D+ Sbjct: 76 IVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKPQIIIGTPGRIIDH 135 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + L+ + + + + M+ + + + Q Sbjct: 136 IERKTLVTRNVGILVLDETDRMFD-----------------MGFGIQIEEIMKHLPKIRQ 178 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT ++ + + + + + + L++++ Sbjct: 179 TLMFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLC- 237 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +++ TKR A+ L + L + +H D+ +R +I R G ++V Sbjct: 238 --QRKGSIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMV 295 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ GLD+P + V D +S+ + IGR AR G A+ + Sbjct: 296 ATDVASRGLDIPHIQHVINYDVP-----QSQADYVHRIGRTARAGAEGFALSFVTPQDKR 350 Query: 561 MAKAIGETERR 571 A+ + E Sbjct: 351 RLPALADKEGE 361 >UniRef50_A7K2L3 ATP-dependent RNA helicase n=17 Tax=Vibrionaceae RepID=A7K2L3_VIBSE Length = 419 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 48/388 (12%), Positives = 106/388 (27%), Gaps = 36/388 (9%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ + +E +L F + + + + L Sbjct: 26 PTPVQEKSIPHVLEGKNLL-AAAQTGTGKTAAFGLPIIQTV------QQKKLNGTPQALV 78 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + + +T+ + G G++ P L D+ Sbjct: 79 LVPTRELAQQVFDNLNQYSAQTE-LRIVCVYGGTSIGVQKRKLEEGADILIATPGRLLDH 137 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + + S + + + M + Q Sbjct: 138 LFNGNVNISKTSMLVLDEADRMLD-----------------MGFWPDLQRIFRRLPAEKQ 180 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA-- 443 + SAT + + V + ++ + Sbjct: 181 ILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 240 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++VLV T TK+ +++L + L+ G + ++ D R + + + G+ L+ Sbjct: 241 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 300 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ E+ V D + IGR R G A+ + + Sbjct: 301 DVAARGLDIQELEQVVNFDMPF-----KAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLL 355 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLN 590 AI +R Q+ + + Sbjct: 356 HAIENLLDQRLPQEWLAGFEPTLIEEVE 383 >UniRef50_Q1CXY8 ATP-independent RNA helicase DbpA n=3 Tax=Deltaproteobacteria RepID=Q1CXY8_MYXXD Length = 461 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 58/465 (12%), Positives = 114/465 (24%), Gaps = 22/465 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ L D T + + V + A Sbjct: 6 LALSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGK----TAAFALPLLQ 61 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 ++ + + T+ + G + G+P + L Sbjct: 62 KVQLQHRKVQALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGA 121 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L V + + + L E L + QT+ Sbjct: 122 HLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVRPT------GLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 SAT S V + + + LL +R Sbjct: 182 SATFPPDIEALSRDFQRQPVRVTVEAATAGPDIQQVRYDCEPGDKQALLLRILRHY--QP 239 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V K +L + L G V L D++ ER ++ R VL+ ++ Sbjct: 240 ASAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVA 299 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ + V D + IGR R G A+ I Sbjct: 300 GRGIDVEALDAVINFDLPM-----QAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDI 354 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVV--DILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ P+ D L + G E + Sbjct: 355 QLATGVKLERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTGEAGGL 414 Query: 624 P-MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 D+ +Q + + + +I+ + +++ Sbjct: 415 EATDVGKIEIQDHVAYVAVARRVSRVAFQRLSEGRIKGRRYKIER 459 >UniRef50_A9NFK0 ATP-dependent RNA helicase, superfamily II n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK0_ACHLI Length = 448 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 49/418 (11%), Positives = 101/418 (24%), Gaps = 33/418 (7%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 A++ + + F I E Sbjct: 19 SGYEAPTAIQEQAIP-ILLSGQDLLGSAQTGTGKTAAFAIPILQKI---YETKEHKAPRK 74 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L L E ++ + + G + + P Sbjct: 75 VQALILTPTRELALQIH-ENVKIYAKYLNIISTTIYGGVSQKRQEEALKRGVDVVIATPG 133 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + + + D ++ + + M + Sbjct: 134 RLLDLMNQKIISLQDVRYLVLDEADQML-----------------DMGFIKDVTSIVDKT 176 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIR 440 QT+ SAT S +V+ + I + + Sbjct: 177 PKKRQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLI 236 Query: 441 QRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + VLV T TK A L + L G +H R + + + G+ Sbjct: 237 DLIYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTK 296 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ G+D+ + V + + I IGR R +G A+ D Sbjct: 297 ILVATDIAARGIDIEALDYVINFELP-----EVPETYIHRIGRTGRAGLSGMALSLVDPS 351 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + + + + + P+ + + K Sbjct: 352 EQKLLTQVEKHINSKIEAVGHKYQIQSQPKQREVITDKLKTDTSKKQEKPKKELPDYL 409 >UniRef50_Q9LUW5 DEAD-box ATP-dependent RNA helicase 53 n=18 Tax=Magnoliophyta RepID=RH53_ARATH Length = 616 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 97/357 (27%), Gaps = 23/357 (6%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLEN---NKLLEEQRLTQRTQFDLEMMNELGYC 303 + + + + L + ++ E Sbjct: 142 RDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRES 201 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLV 362 + S G P L + V I + + L Sbjct: 202 AP----SLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLD 257 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDP 421 E L E Q++ SAT ++ + + + + G D Sbjct: 258 EADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQ 317 Query: 422 -------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + + ++ + A + +V T TKR A+ L+ L + Sbjct: 318 KLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYAL-ARSFKCE 376 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH DI +R + R G F++LV ++ GLD+P V L+ + + + Sbjct: 377 ALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPN-----NTET 431 Query: 535 LIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + GR R G AIL + K I R + + Sbjct: 432 FVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSASMFE 488 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 112/666 (16%), Positives = 229/666 (34%), Gaps = 70/666 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 ++ + +RL EG+ Q + G G+ +TF +A V L RP +V+ N Sbjct: 1 MSKNIFSLMQENSEFKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITEN 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + +A ++ +++ F + +F + ++ R+ Sbjct: 60 EQVAREIAEDLEFFLGDKTSRFFYREGF-------------LFDLTVREGGELKASRIEL 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 K + V + A+ P + + L VG +++ ++R L+++ Y R D Sbjct: 107 LKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVD 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F RG ++D++ ++ R E F +E++ L D + + + + IYP Sbjct: 167 QVEAPGQFSQRGGIVDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYP 224 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + +++ ++I ++ + K L++ NK RL + E++N LG Sbjct: 225 AEVAVAEEDLLLEVKQKISADIEQQVKKLIQQNKREAAGRLK---EKGAEVLNILGKSEV 281 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 IE + +L DY + L+ +DE QI + + R + G Sbjct: 282 IEKLLPYFWSGV------SLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGG 335 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + + + L + +++ + + D P Sbjct: 336 YTLPKQAEVFYEEEQLMALLRGRIAVITSLLPK-----TPRFIGDYDPHNFAGRKPP--- 387 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +I+ A N R+ + + A L L + ++ E+ Sbjct: 388 -NYLGKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFV-------EK 439 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E+ R + + +L G + P+ L+ D + GRA + Sbjct: 440 FEVEIAPREIKIGL----GVLNSGFEFPQQKLLVYTDVEL-------------AGRAVKA 482 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 KA+ + KY + G K + I G++ Sbjct: 483 RVTKAV--LGERAEEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRL- 539 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P + N+ + K+ L G Q +N ++ + L +L Sbjct: 540 --------YVPPEQVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLEL 591 Query: 666 RELFIA 671 +A Sbjct: 592 YAKRMA 597 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 69/462 (14%), Positives = 133/462 (28%), Gaps = 38/462 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + + ++ A Sbjct: 613 FEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDGKQV 672 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q E + G R LS + L + + Sbjct: 673 AVLTPTTLLAQQHYNTFKERFS------GYPVEIRLLSRFQTAREQKEIIKELKRGKVDI 726 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + Y + + + + ++ATP Sbjct: 727 VIGTHRLLQDDVQFYDLGLMIVDEE--------QRFGVAQKERLKILTETVDVLTLTATP 778 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + + D V T + V + ++ IR+ +V Sbjct: 779 IPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNR 838 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +++ +++ +V H + + ++ + G++DVLV ++ G+D+P Sbjct: 839 VSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLP 898 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I +AD+ G + L Q GR R+ + K + E +R Sbjct: 899 NVNTLIIKNADRFGLAQ----LYQLRGRVGRSNRIAYAYLMYEKD----KVLREAAEKRL 950 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K E G GL + D+ G + V DM K LQ Sbjct: 951 AAIKEFTEFG---SGLKLAMRDLEIRGAGNLLGPEQHG-------HIAAVGFDMYMKLLQ 1000 Query: 634 QKIHELEGLM--MQHAQNLEFEEAAQIRD-QLHQLRELFIAA 672 + + EL+G + + LE A I + + ++ Sbjct: 1001 ETVAELKGQVTSEEVEPQLELNLTAYIPESYIPDEKQKIEMY 1042 >UniRef50_Q0W8H7 ATP-dependent RNA helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W8H7_UNCMA Length = 497 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 65/455 (14%), Positives = 127/455 (27%), Gaps = 27/455 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L V + + + + + Sbjct: 7 LNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEAIRP 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 +K ++ + + +++ EL + G+ + L Sbjct: 67 T---SKGVQGLVVVPTRELAVQVAEELTRIGKV--RGIRSVAIYGGQDFRSQVKALEELP 121 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + R R L E L + K + QT+ Sbjct: 122 HIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + D + P + + L + Q Sbjct: 182 SATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEK-- 239 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E +V T+ +L + L E G LH D+ +R + + GE +LV ++ Sbjct: 240 PELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDV 299 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ V+ V D R S + IGR R N G A + + +A Sbjct: 300 AARGLDIQGVTHVYNFDIP-----RDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEA 354 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVD----ILALGQNIAKTKAKG-RGKSRPIVE 619 I + + + T + + + I + + A+ P Sbjct: 355 IEQAIDHQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPATI 414 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 +S + +I L + A + + E+ Sbjct: 415 LAAALRILSKAEEKPQI-RLTEIPEPVAPDRKAEK 448 >UniRef50_C3RH47 ATP-dependent RNA helicase RhlE n=2 Tax=Bacteria RepID=C3RH47_9MOLU Length = 418 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 53/443 (11%), Positives = 115/443 (25%), Gaps = 36/443 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + +F F + E + + Sbjct: 3 YDIPSPIQEQAIPAIISGRDIFG-CAKTGTGKTAAFALPILQKLYLRDE--SEKYPRTIK 59 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + + + G G + P L Sbjct: 60 ALILAPTRELAIQINETFEAMNPQV-NLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRL 118 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + ++ + + L K F Sbjct: 119 IDLYNQGLVDLKHVEYLVLDEA-----------------DRMLDMGFIKDIRKILRFIPR 161 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + D + ++ + + L+ Sbjct: 162 RHQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKL 221 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + +V TKR + L + L + +H D R+ + + + + Sbjct: 222 L--ENPQIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVR 279 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ G+D+ E++ V D + + IGR AR +G+AI + Sbjct: 280 VLVASDIAARGIDIDELTHVINFDLP-----DQAENYVHRIGRTARAGASGEAITFCSFQ 334 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 ++ K I + + KK ++ KAK + + Sbjct: 335 EKALLKDIQKFINQDIPVVDNPYYPMKDLSIPEKKHKSKKKGETQKSRDKAKHLKQGQKK 394 Query: 618 VEPDNVPMDMSPKALQQKIHELE 640 + + + K + Sbjct: 395 LSVRTNNIKKNSKTKRSNFKRRR 417 >UniRef50_C7NBE3 DEAD/DEAH box helicase domain protein n=3 Tax=Leptotrichia RepID=C7NBE3_LEPBD Length = 571 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 114/400 (28%), Gaps = 16/400 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R E F E L+ + S I + + T Q Sbjct: 3 RFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPIL 62 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 ++ +K + L + ++ +E+ G + G L A Sbjct: 63 ETIDADKTVRALILAPTRELANQVSDEIYSLKGE--KDIKVLAVYGGASIENQIKRLKAG 120 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + I + + + L E L + E + ++ Sbjct: 121 VDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLF 180 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRA--AIN 446 SAT L + + + + + E + +D + + N Sbjct: 181 FSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQN 240 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V TK +D+T L+ +H DI R + + + +LV ++ Sbjct: 241 FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVA 300 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+ ++ V + S + IGR R G AI + S I Sbjct: 301 ARGIDVSNLTHVINYSIP-----QEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQI 355 Query: 566 GETERRREKQQKYNEEHGITPQGLN--KKVVDILALGQNI 603 + K++ I VD + + Sbjct: 356 KRVTKTDIKREDIPNVEEILEAKKEALVAYVDEIIKESDF 395 >UniRef50_Q4UBV5 DEAD-box family (RNA) helicase, putative n=2 Tax=Theileria RepID=Q4UBV5_THEAN Length = 797 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 47/469 (10%), Positives = 112/469 (23%), Gaps = 85/469 (18%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA------ 259 + ++ + F + T + + Sbjct: 266 YTKPTPIQRHSIP-VILAGRDLMACAQTGSGKTAAFLLPIVTSMLRTGPPKQPSLGPLYN 324 Query: 260 -MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + L L E ++ T ++ G + Sbjct: 325 SRVALPVCLVLSPTRELAVQTYTESRKFNFGTG-IRTVVLYGGSEVRRQLIELERGCDIC 383 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL---------- 368 P L D + ++ ++ + + M + + + + Sbjct: 384 VATPGRLTDLVERRKIVFSCIKYLVLDEADRMLDMGFSPQIKSILSHPTMTSNVDNSDRV 443 Query: 369 PSALDNRPLKFEEFEALAPQTIYVS----------------------------------- 393 D+R ++ S Sbjct: 444 RGGSDSRVSSIRGEGRSTKDSVRDSMETPLGVKEDPFGAGGTTSLGGADTVTGDTVKEKK 503 Query: 394 ---------ATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 AT + + + D + G + + ++ L+ Sbjct: 504 ILRQTVMFSATFPKEIQQLAREFLNDYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIK 563 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + VL+ TK+ A+ + YL + +H D +R + + + G Sbjct: 564 LLKDNTNLGGLVLIFVETKKRADLIEGYLLSENFKAVNIHGDRSQEDREKALSLFKAGVR 623 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 ++V ++ GLD+ ++ V D + + IGR R N G A ++ Sbjct: 624 PIMVATDVAARGLDISNITHVINCDLPT-----NIDDYVHRIGRTGRAGNIGIATSLVNE 678 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + + ++ K V I Sbjct: 679 SNRPILKDLLLLLQESNQEIPIW---------FKKLVNTISKRNTGKKF 718 >UniRef50_Q9XVZ6 Protein Y54G11A.3, partially confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XVZ6_CAEEL Length = 504 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 49/396 (12%), Positives = 111/396 (28%), Gaps = 36/396 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA-MEEIKEE 266 ++ +++ + ++ F + H + + E+ Sbjct: 106 KPSPIQSQMWP-LLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSP 164 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 E + +E + + G + + P L Sbjct: 165 FVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLT 224 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + ++V + + L + + Sbjct: 225 DLSNDGVISLASVTYVVLDEADR-----------------MLDMGFEVAIRRILFEIRPD 267 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLS- 437 SAT + + + V+ G LD E P ++ + Sbjct: 268 RLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEI 327 Query: 438 --EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + N ++++ +K MA+ L+ G + LH +R + LR G Sbjct: 328 VNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSG 387 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 E +LV +L G+D+P+++ V D + +GR R G+A+ + Sbjct: 388 EVQILVATDLASRGIDVPDITHVLNYDFPM-----DIEEYVHRVGRTGRAGRKGEAMSFL 442 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 S + + + + E++ L Sbjct: 443 WWNDRSNFEGLIQILEKSEQEVPDQLRRDAEKYRLK 478 >UniRef50_C4QF24 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QF24_SCHMA Length = 794 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 84/591 (14%), Positives = 169/591 (28%), Gaps = 99/591 (16%) Query: 30 DGLAHQTLLGVTGSGKTF-----TIANVIADLQRP-----TMVLAPNKTLAAQLYGEMKE 79 +L TG+GKT + ++I +VLAP + L Q+ + + Sbjct: 44 SSGRDAVVLARTGTGKTLAFSLPLVNSLIKGQGSRPSSPVVLVLAPTRELVTQIATDFES 103 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 V Y+P+ A+ + +VV Sbjct: 104 ISVHGIKVTSVYGGVPYRPQC---------------------------DALRQGTHIVVG 136 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A + L + + + V +D+ + ++ +++ D G F + Sbjct: 137 APGR-VIDLMEKGVLKLSSVRHVVLDEVDR------MLDMGFSK-DVEISPGDFSNF-NI 187 Query: 200 IDIFP------AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 D+ S+ ++ + + + + L F++ + Sbjct: 188 ADVIIEKLRARNISELFPVQFKTY-DIISSGRDAVVLARTGTGKTLAFSLPLVNSLI--- 243 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + + L L + + ++ G + + Sbjct: 244 -KGQGSRPSSPVVLVLAPTRELVTQIATDFESISVH--GIKVTSVYGGVPYRPQCDALRQ 300 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P + D + L + HV + ++ M L Sbjct: 301 GTHIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRM-----------------LDMGFS 343 Query: 374 NRPLKFEEFE-----ALAPQTIYVSATPGNYELEKSGGDVVD----QVVRPT------GL 418 + PQT+ SAT ++ E S + D + Sbjct: 344 KDVESILSKIYNSENSEKPQTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTN 403 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + + + P ++ L I+ R +V K+ A++L+ G LH Sbjct: 404 VTHLALLCPYESRAATLSDVIKVYCKGRESRCIVFCERKKDADELSASDAMSG-DCHVLH 462 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + +R +++ R G++ L+ N+ GLD+P V LV R I Sbjct: 463 GSVPQDKRELVLQRFRDGKYRTLLTTNVAARGLDVPNVDLVIQCHPP-----RDIEDYIH 517 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 GR R G +I + SM I ++ + IT Sbjct: 518 RSGRTGRADRSGTSICFYTYKERSMLSRIENMAGITFRRISAPTINDITTA 568 >UniRef50_A4BET4 DEAD/DEAH box helicase-like protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BET4_9GAMM Length = 579 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 16/378 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ L T + + + + + L +R Sbjct: 10 LGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSRIDT 69 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K + + T+ + E + + G L + Sbjct: 70 T----KNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALKQNP 125 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V + + + L E L E QT Sbjct: 126 QVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALF 185 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ--RAAINE 447 SAT + + D V IE + D L + + Sbjct: 186 SATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWN 245 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +++ T+ + L+E L G L ++ +R +I+ ++ G+ D+++ ++ Sbjct: 246 AIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAA 305 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ ++ V D + IGR R GKAIL+ + + I Sbjct: 306 RGIDIERITHVINWDIP-----GDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIE 360 Query: 567 ETERRREKQQKYNEEHGI 584 + + Sbjct: 361 RATKSELIDYPMPSAEKL 378 >UniRef50_Q5KME7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=3 Tax=Agaricomycotina RepID=PRP5_CRYNE Length = 1072 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 64/467 (13%), Positives = 129/467 (27%), Gaps = 55/467 (11%) Query: 165 MIIDQRAILRRLAEL--------QYARNDQAFQRGTFRVRGEVIDIFPAESDDIA--LRV 214 +++ L L G F + +D+ + + ++ Sbjct: 372 EVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSIQA 431 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + + + F + H R E + Sbjct: 432 QAIP-AIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSG---SEGPIAVVMSPTRE 487 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-- 332 L + E Q + G + + P + D L A+ Sbjct: 488 LASQIYKECQPFLK-VLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNG 546 Query: 333 -GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 V +++ + + M+ + + +K + Q + Sbjct: 547 RVTNVRRTTYIVMDEADRMFD-----------------MGFEPQVMKIINNVRPSAQKVL 589 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + +V + G +D +EVR T+ LL + + Sbjct: 590 FSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGE 649 Query: 445 INE-----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ R L+ + A+DL L + G LH + V+R E I++ + G+ + Sbjct: 650 EHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPI 709 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 +V ++ GLD+ E+ LV DA + GR R G I + Sbjct: 710 IVATSVAARGLDVKELKLVINYDAPNH-----MEDYVHRAGRTGRAGNKGTCITFITPEQ 764 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + I + ++ K+ A Sbjct: 765 ERFSVDIVRALEASKAFI--PDDLKKMSDSFLGKIKSGKARAAGSGY 809 >UniRef50_D0MH79 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MH79_RHOM4 Length = 505 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 53/453 (11%), Positives = 116/453 (25%), Gaps = 48/453 (10%) Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 + + ++ P + + +E + F + Sbjct: 44 ELPERMQQAARAIGWTELMPVQRRTLPYLLE--------GRDVIVQSQTGSGKTGAFLLP 95 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + L L E M + Sbjct: 96 LFERL--------DPSRGQVQALILTPTRELARQI-----------SEAFEQMKTGVSGA 136 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVE 363 S G L +V+ + I R + E Sbjct: 137 Q----SLRAVLVYGGVRYGPQLKALEQGAQVVIGTPGRILDLIERGALRLGALQVLVFDE 192 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPT 416 L + + + T SAT + + D Sbjct: 193 ADEMLSMGFYPAMRQLKRYLPRERNTAMFSATMPPRVQALAREFLKDPAFVSLSTDRIAA 252 Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 ++ + P + L+ I E ++ TKR E L ++L+ +G + Sbjct: 253 ETIEHRYFIVPPMEKDRALVQLI--ELENPESAIIFANTKRDVEYLGQFLKNYGYNADAI 310 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 D+ +R I+ LR G+ +LV ++ G+D+ ++S V + D + + Sbjct: 311 TGDLPQKQRERIMDRLRKGQLRLLVATDVAARGIDISDLSHVFMYDVP-----QDPEYYV 365 Query: 537 QTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 GR R G I+ + + +AI ++ + + + V Sbjct: 366 HRSGRTGRVGKEGTTIVLVTPLEEARLRAIARQYDIPLEKGTLPTPETVAERVAERAVAL 425 Query: 596 ILALGQNIAKTKAKGRGKSRP-IVEPDNVPMDM 627 + + + + P + + ++ Sbjct: 426 LEDRYRETTSLDRERIARFVPLVEQLAQEEPEL 458 >UniRef50_D2VHF0 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VHF0_NAEGR Length = 493 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 51/406 (12%), Positives = 113/406 (27%), Gaps = 38/406 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + A++ + L + I + ++ L Sbjct: 110 EPTAVQKQCIP-IAMNGIDLVGLAETGSGKTASYIIPMCCQIAKLPRMNDEIAKDGPYGL 168 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + ++ + G ++ P L D Sbjct: 169 ILVPTRELAEQIEREATKYARQFE-FRVQAIIGGVSIEKQSRLIRGGCEILVATPGRLID 227 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--L 385 L +++ + + + M + + E + Sbjct: 228 CLNNSIVVLNQCHFIVLDEADKMIEMN-----------------FEKDVNTILENMPTHI 270 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT--------QVDDLLS 437 QT+ SAT + + +V G + +E + D LL Sbjct: 271 QRQTMLFSATMPPEVENIAMKYLKKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDKLLE 330 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + V+V K+ + + +++ G R +H + R + + G+F Sbjct: 331 LLY---DADPPVIVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKSGKF 387 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 DV+V ++L G+D+ V+LV ++ + IGR R G+A+ + K Sbjct: 388 DVIVATDVLGRGIDISGVTLVVNYSLP-----KTISAYTHRIGRTGRAGRTGRAVSFLTK 442 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + + + + + K +G Sbjct: 443 DDTEIMYDLKKMLESTKNTVPEELAQHPSAAQKPDKKKSDQPIGGG 488 >UniRef50_A8F2F8 ATP-dependent RNA helicase RhlE n=16 Tax=Rickettsia RepID=A8F2F8_RICM5 Length = 415 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 110/368 (29%), Gaps = 18/368 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L +E + L + + + + + L Sbjct: 11 LSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLI------D 64 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 K + T+ ++ I +Y + GEP P F L + + Sbjct: 65 SFIKNKTTALILVPTRELATQIHSTLNKVTI-SYKINSAVLIGGEPMPKQFMQLKKNPKV 123 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ I + + DR L E L + + + +F Q + SA Sbjct: 124 IIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSA 183 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRAAINERVL 450 T + + S + + V G + I + + + +Q V+ Sbjct: 184 TMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLGNREGSVI 243 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKR A+ L + L+ +H D+ +R +I R ++V ++ GL Sbjct: 244 IFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGL 303 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+P V D + IGR R G A+ + AI Sbjct: 304 DIPHTQHVINYDLPM-----CPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAIDRLV 358 Query: 570 RRREKQQK 577 + E + Sbjct: 359 NKGESTLR 366 >UniRef50_B8C0Y3 U5 small nuclear ribonucleoprotein, RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C0Y3_THAPS Length = 501 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 118/400 (29%), Gaps = 26/400 (6%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + I+ + ++ + + + F I H ++ + I+ Sbjct: 99 DAIENTLKYTKPSPIQRQAIP-IGMQRRDLIGIAETGSGKTAAFGIPLCHHILSFPQSIL 157 Query: 258 QAMEE-IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + E L L +E ++L Q + + G + Sbjct: 158 DTVAEEGPLALVMAPTRELALQIDIEIRKLLSSQQNVVSLAVVGGQSITEQATKLRNGVH 217 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP------- 369 P + D + L++ S++ + + M A + + Sbjct: 218 VVVGTPGRINDCVEMAYLVLNQCSYIVLDEADRMIDLGFAPQIEQILDAMGGKLKSENET 277 Query: 370 ---SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------L 418 + T SAT + + + V+ G Sbjct: 278 EAYEQERKDLEILGKAVPSHRLTAMFSATMPSEVERIAKRYLRHPVIVQIGDQDSGKNAR 337 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + + + Q + L +I +R+ +E+++V K+ A+ + +E G R LH Sbjct: 338 ITQRVLYLSSSKQKESTLRDILRRSRSDEKIIVFVNEKKHADGVGRMVENAGRRCVVLHG 397 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 +R E + R G VLV ++ GLD+P+V V D RS + Sbjct: 398 GKTQEQREENLGLFRRGGV-VLVATDVAGRGLDIPDVHQVINFDLPT----RSIDNYCHR 452 Query: 539 IGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 IGR R G A + + + Sbjct: 453 IGRTGRAGKEGLATSFITDEDEGIMAQLKTYLESTNSDIP 492 >UniRef50_C8P164 ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P164_ERYRH Length = 487 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 53/418 (12%), Positives = 109/418 (26%), Gaps = 23/418 (5%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 D ++ + V + + V + +E Sbjct: 11 DDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGK----TASFGIPICHQVE 66 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 K + + T+ + E + G + L ++ Sbjct: 67 WKKRKPQVLVLAPTRELAIQIQEDLFNLGRFKR-LKVEALFGRSSFEKQAQRLKEMTHIL 125 Query: 337 VDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + + E ++ Q + SAT Sbjct: 126 VATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQKLLFSAT 185 Query: 396 PGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + +D + ++ L S + + Sbjct: 186 MPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLITE--NPDS 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK E +T ++E+ G +V LH ++ R +++ D + G F LV ++ Sbjct: 244 SIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVATDVAAR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ +VSLV D + S +GR AR GKA+ + I Sbjct: 304 GLDIDDVSLVVNFDVP-----ENTESYTHRVGRTARVDKYGKAVTFASPYEMKFMNLIIN 358 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++ + K KA + + + Sbjct: 359 DTDHELQKVVKPG--QSLVDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKK 414 >UniRef50_A6GSW1 Putative ATP-dependent RNA helicase n=1 Tax=Limnobacter sp. MED105 RepID=A6GSW1_9BURK Length = 617 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 55/365 (15%), Positives = 101/365 (27%), Gaps = 33/365 (9%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 + F + +T + ++ E L L + Sbjct: 40 DLMVSSQTGSGKTFGFLLPVMHRMMTGEQSPMEM-LAGPECLVLCPTRELAQQVSQDAIN 98 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 L + T+ G G + S R P L D L + + + + Sbjct: 99 LVKFTKGVRVATVVGGMPYGKQMASLR-GARIVVGTPGRLLDLAQQGKLNLSTVTTLIVD 157 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + M ++ QT+ SAT + + Sbjct: 158 EADRMLDLG-----------------FSEDLEAIDQLCGNRIQTLMFSATFAKRIIGLAE 200 Query: 406 GDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + + + LL+ + + +V T T+ Sbjct: 201 NIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLNHWLEH-PDMVQAVVFTSTQID 259 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 AE+L L + G R LH + V R + +R G+ VLV ++ GLD+P +S V Sbjct: 260 AENLARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIKVLVATDVAARGLDVPAISHV 319 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 + IGR R G A+ + + I R +++ Sbjct: 320 INYGMPM-----KSEDYVHRIGRTGRAGRSGVAVTLAEACDIISVRGIERFINSRIPEEQ 374 Query: 578 YNEEH 582 Sbjct: 375 VEGLE 379 >UniRef50_Q484Q1 RNA helicase DeaD n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484Q1_COLP3 Length = 611 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 64/444 (14%), Positives = 127/444 (28%), Gaps = 22/444 (4%) Query: 233 QIVSTIPRFTIYPKTHYVTPRE-RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I TI P Q ++ + + + T+ Sbjct: 36 TSATDIQALTIPPL--LAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTR 93 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 + E G + ++ G+ F L +VV + + Sbjct: 94 ELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKS 153 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + D R L E L + Q SAT + + + D Sbjct: 154 LKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKD 213 Query: 411 QVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEY 465 + I ++ + + A + +++ T+ D+ E Sbjct: 214 PEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEK 273 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 LE G L+ D++ +R I ++ G+ +LV +++ GLD+P +SLV D Sbjct: 274 LERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLP- 332 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + IGR R G +I + + I Sbjct: 333 ----GDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNGTVLNYDLPNIQDI 388 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + + V++ + + R IVE ++S L + + M Sbjct: 389 GKIRIERTRVEVAKIVADK------DISSMREIVEGMAAESEVSMIDLAAALL-FQKQMK 441 Query: 645 QHAQNLEFEEAAQIRDQLHQLREL 668 Q Q E + + + + Sbjct: 442 QPLQPKEDPKPRRDARERTDRNDR 465 >UniRef50_B6AIT6 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIT6_9CRYT Length = 538 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 44/385 (11%), Positives = 112/385 (29%), Gaps = 19/385 (4%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++++ ++ + + F + ++ ++ Sbjct: 154 HDKPTSIQMQCIPIGIQ-MRDLIGIAETGSGKTLAFLLPLLSYVYKLPLLNFDTAQDGPY 212 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L LE Q+L ++ + G + + P + Sbjct: 213 GLILAPARELALQIELEAQKLLKKEIGIRTLSIVGGRSVEKQAFELRRGVEIIIATPGRM 272 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR--LPSALDNRPLKFEEF- 382 D L ++ +++ + + M + + K + Sbjct: 273 RDCLEKSLTVLTQCNYIILDEADRMVDMGFEDCLNYILDQIPANYERGSEEGNTKILKNR 332 Query: 383 --EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 T SAT + + + + + G + I+ + Sbjct: 333 YGCRNHRITQMFSATMQSEVEKIARKYLKFPLYVTIGDMGSGKKSIQQILNFISENKKQS 392 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L++ + +++ K+ + + + +G +V LH +R + R Sbjct: 393 TLINVLNNYEYAIPPIIIFVNQKKTVDIVCRSIASNGFKVIGLHGGKIQEQRENNLNLFR 452 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G +D+LV ++ G+D+ V+LV D + + IGR R G AI Sbjct: 453 NGIYDILVATDVAGRGIDIANVNLVINYDVP-----STIDTYTHRIGRTGRAGKSGVAIS 507 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + + ++ + + Sbjct: 508 FVTQQDSNLFSELKKILISTNNIVP 532 >UniRef50_Q6C024 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Yarrowia lipolytica RepID=PRP28_YARLI Length = 575 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 57/397 (14%), Positives = 116/397 (29%), Gaps = 18/397 (4%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F I ++ + ++ Sbjct: 183 YKEPTPIQRAAIPIAL-GIRDVIGVAETGSGKTASFLIPLISYICELPKLDERSKVNGPY 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + + GY + + + P L Sbjct: 242 GLILAPTRELAMQIKDEAVKFCAPLG-FKVVSVVGGYSAQEQALAVQEGAELIVATPGRL 300 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK---FEEF 382 D + L++ +V + + M + V +A + Sbjct: 301 LDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAKPDSDEAENLAAVS 360 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDL 435 QT+ +AT + + + + G + ++E + Sbjct: 361 TRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQLVEFLNTDEKRKRR 420 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L +I + ++V KR E +++ L G R +H +R + ++ L+ G Sbjct: 421 LLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQEQREQAVQHLKRG 480 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 DVLV ++ GLD+P VSLV + S IGR R G A+ + Sbjct: 481 AVDVLVATDVAGRGLDIPNVSLVVN-----FQMANNIESYTHRIGRTGRAGKRGTAVTFL 535 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + + + + R E E + K Sbjct: 536 GQEDDDVLFELKQMISRSEASPNNQELSRHPAARMKK 572 >UniRef50_B2S5R2 ATP-dependent RNA helicase, DEAD/DEAH box family n=54 Tax=cellular organisms RepID=B2S5R2_BRUA1 Length = 531 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 109/383 (28%), Gaps = 40/383 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TPRERIVQAMEEIKE 265 ++ ++ + ++E + F++ + +R + Sbjct: 108 TEPKPIQTQAIPSQLEGQDILGI-AQTGSGKTAAFSLPILQKIIGLGDKRRPKTA----R 162 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + +++ + G + P L Sbjct: 163 ALILAPTRELAVQIEQTIRNVSKSAH-ISTALVLGGVSKLSQIKRIAPGIDVLIATPGRL 221 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + L N + + Sbjct: 222 TDLMRDGLVDLSQTRWLVLDEA-----------------DRMLDMGFINDVKRIAKATHA 264 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT SAT + + D V + ++ P + L + Sbjct: 265 ERQTALFSATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAM 324 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A V+V T TK A+ + +LE V +H + R + R G Sbjct: 325 LTD--ADMRSVIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLR 382 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++ G+D+P +S V D + + IGR RN +G +I D Sbjct: 383 ILVATDIAARGIDVPGISHVVNYDLP-----DEPETYVHRIGRTGRNGASGASITLYDPA 437 Query: 558 -TPSMAKAIGETERRREKQQKYN 579 S +A+ R + + Sbjct: 438 TEESKLRAVERVTRSKLSIKDAP 460 >UniRef50_Q5KHB7 ATP-dependent RNA helicase DBP3 n=2 Tax=Filobasidiella neoformans RepID=DBP3_CRYNE Length = 605 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 60/408 (14%), Positives = 116/408 (28%), Gaps = 40/408 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + + F + + Sbjct: 195 KPTPIQACSWPALL-SKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVP- 252 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + + T+ + +E G + + + G + Sbjct: 253 ------------GQIQMLVLAPTRELAQQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARE 300 Query: 328 YLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-- 384 D +VV T+ G L E L + +N + Sbjct: 301 LSQKDTRVVVGTPGRTLDLADSGELDLSSVSYLVLDEADRMLDAGFENDIRRIIAHTPGH 360 Query: 385 -LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRP-VATQVDD 434 QT+ SAT + + + + G ++ I+EV + Sbjct: 361 KEGRQTVMFSATWPESVRRLASTFLNNPLRITVGSDELSANKRIEQIVEVLDNPRDKDFR 420 Query: 435 LLSEIRQRAA-------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L ++ R+LV L K+ A+ L + G V LH D+ R + Sbjct: 421 LTHHLKAHLKVHPNSKTSPTRILVFALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFK 480 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + + G+ +VLV ++ GLD+P+V LV + + + GR R Sbjct: 481 ALEAFKTGQQNVLVATDVAARGLDIPDVGLVINVTFPL-----TTEDFVHRCGRTGRAGK 535 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 GKA+ + + A R+ + +E P + KK Sbjct: 536 TGKAVTFFTGENHEKSLAGEFMRVLRDVGAEIPKEMDRFPTTIKKKEH 583 >UniRef50_B9SW84 Dead box ATP-dependent RNA helicase, putative n=3 Tax=Magnoliophyta RepID=B9SW84_RICCO Length = 1173 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 62/466 (13%), Positives = 132/466 (28%), Gaps = 35/466 (7%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLEN 277 +E + + + I + + + + L+E Sbjct: 538 ILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPLVEA 597 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + ++ +++ + + G L +VV Sbjct: 598 GDGPIGLIMAPTRELVQQIHSDIKKFAKV--LGIRCVPVYGGSGVAQQISELKRGTEIVV 655 Query: 338 DESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 I + G + R + E + + + + QT+ S Sbjct: 656 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 715 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + + V G + ++EVRP + + LL + + Sbjct: 716 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLGEW-NEK 774 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++L+ ++ + L L +HG LH D +R I D + ++L+ ++ Sbjct: 775 GKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA 834 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ E+ LV D + +GR R G AI + + A + Sbjct: 835 ARGLDVKELDLVVNFDVPNH-----YEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDL 889 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT--------KAKGRGKSRPI 617 + E+ E+ G KV L + + + Sbjct: 890 VKALELSEQV--VPEDLKALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRIAAKK 947 Query: 618 VEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + + I + G + +H L + A Sbjct: 948 AQAKEYGFEEDKSDSEDEDEGIRKAGGDISRHNAALAQQLVAIAAA 993 >UniRef50_UPI0001C311D7 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311D7 Length = 481 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 51/374 (13%), Positives = 107/374 (28%), Gaps = 44/374 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F + + + Sbjct: 22 YENPSPIQEQAIPPLL-AGNDMIGQAQTGSGKTAAFGLPLMEYVDPSDRDVQ-------- 72 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-LGYCSGIENYSRFLSGRGPGEPPPT 324 A E + + + + ++++ G + G+ Sbjct: 73 --ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRAGGQIVVGTVGR 130 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + D + L++ V + + M K Sbjct: 131 VKDLISRHSLMLHGTRFVVLDEADEML-----------------DLGFLEDVEKILALTP 173 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLS 437 + QT SAT + S + + V ++ + D L + Sbjct: 174 GSRQTALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGT 233 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++ +V TK + L L + G V+ LH D+ +R ++ + G Sbjct: 234 VL--ESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRL 291 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +LV ++ GLD+ V+ V D S + IGR R +G+AI + D Sbjct: 292 PILVATDVAARGLDISSVTHVVNFDVPT-----SPDVYVHRIGRTGRVGRSGRAITFYDS 346 Query: 557 ITPSMAKAIGETER 570 +AI R Sbjct: 347 KQKRDIEAIERHTR 360 >UniRef50_D1N203 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N203_9BACT Length = 627 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 105/385 (27%), Gaps = 13/385 (3%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L + S I TI Q L E Sbjct: 15 EVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVIELCEGGGKK 74 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + E ++ G+ L +V+ Sbjct: 75 PQALILSPTRELSIQIAEELNSLKG-KRKLRIAPFYGGQMIEIQLQRLRDGIDVVIGTPG 133 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + L E L K + + SAT Sbjct: 134 RIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLMFSATMPPEI 193 Query: 401 LEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLT 455 L+ + + + E + +D + + + LV T Sbjct: 194 LKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEALSRIIDVEQDLYALVFCRT 253 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + ++L E L+ G RV LH DI ++R +I + +F +L+ ++ G+D+ ++ Sbjct: 254 RNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATDVAARGIDVNDL 313 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 + V + + + IGR R G AI + I + Sbjct: 314 THVINYSMP-----QGTETYVHRIGRTGRAGKNGTAITFVTPAEYRKLTMIQREAHTEIR 368 Query: 575 QQKYNEEHGITPQGLNKKVVDILAL 599 +++ + I + Sbjct: 369 REELPQGRDIVEMKKQHFSEQLSEA 393 >UniRef50_B6K6A2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K6A2_SCHJY Length = 672 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 64/382 (16%), Positives = 109/382 (28%), Gaps = 23/382 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + A++ ++R + F I TH M Sbjct: 276 YKEPSAIQRAAIPLLLQRNDIIGIAE-TGSGKTAAFVIPLVTHISRLPALDDTNMHLGPY 334 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L +E + ++ + G+ +++ P L Sbjct: 335 AIILAPTRELAQQIQVEASKFSEPLG-LRCVAVVGGHAFEEQSFQMSQGAHIVVATPGRL 393 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF------ 379 D L ++ V + + M PS D+ Sbjct: 394 VDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTS-LPPSGHDDDEAMVAGEDLL 452 Query: 380 -EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQ 431 A QT+ SAT + + ++ G + + +E+ + Sbjct: 453 RSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRVEQRVEMIADDAK 512 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L EI ++V KR E L + L G RV LH +R I Sbjct: 513 RRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGSKSQEQRERAIEQ 572 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 LR D+LV +L G+D+P VSLV + +S IGR R G A Sbjct: 573 LRNHSADILVATDLAGRGIDIPNVSLVVNYNM-----AKSIEDYTHRIGRTGRAGKHGTA 627 Query: 551 ILYGDKITPSMAKAIGETERRR 572 I + + + + Sbjct: 628 ITFLGPEDTGVYYDLRLMLSKS 649 >UniRef50_UPI000186D4DD DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D4DD Length = 684 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 55/379 (14%), Positives = 103/379 (27%), Gaps = 55/379 (14%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA---MEE 262 ++ + F + + + ++ Sbjct: 261 YDKPTPVQKYAIP-IIMSRRDLMACAQTGSGKTAAFLVPILNQMYQRGPQNNRPYSHRKQ 319 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L L E ++ + G + P Sbjct: 320 YPMGLVLAPTRELATQIYDEARK-FSYRSRLRPCVVYGGSYLQDQFRELEKGCHLLVATP 378 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D L D + + + + + + M L + + + E Sbjct: 379 GRLADMLDRDKIGLENCKFLVLDEADRM-----------------LDMGFEPQIRRIVEK 421 Query: 383 EAL---APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + QT+ SAT + ++D LL+ Sbjct: 422 DMPRTGERQTLMFSATFPDVIQADKRSFLLD------------------------LLNAT 457 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R + LV T++ A+ L EYL G V +H + ER + +R R GE + Sbjct: 458 RYKNGTESLTLVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRFRSGETPI 517 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV + GLD+ V+ V D + IGR R N G A + ++ Sbjct: 518 LVATAVAARGLDISHVTHVINFDLP-----SDIEEYVHRIGRTGRMGNLGVATSFFNEKN 572 Query: 559 PSMAKAIGETERRREKQQK 577 ++ + + E + Sbjct: 573 RNIVRDLVELLTETNQDLP 591 >UniRef50_B2UNH8 DEAD/DEAH box helicase domain protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UNH8_AKKM8 Length = 604 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 66/442 (14%), Positives = 117/442 (26%), Gaps = 19/442 (4%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E +E + + T + V Sbjct: 14 PEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALECIDPEERC 73 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + T+ + + G D L VV Sbjct: 74 VQ----VLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRGVQFVV 129 Query: 338 DESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + G R D R L E L + + QT++ SAT Sbjct: 130 GTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLFFSATM 189 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE--RVLV 451 + + V P IE + + + + LV Sbjct: 190 SPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKIKMGLV 249 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK++ +D+ + L G V LH D+ + R ++ R G +LV ++ GLD Sbjct: 250 FANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIAARGLD 309 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + +V V + R + IGR AR GKAI + + S+ I Sbjct: 310 VDDVDAVVNFELP-----RDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFIG 364 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + + + V DIL + A + + D+ Sbjct: 365 VKLTPEPVLTAVQVDQLRTESLVDDILERLKPDAVLPEELKEVEAAPEAMAAALFDL--- 421 Query: 631 ALQQKIHELEGLMMQHAQNLEF 652 ++ E++ + Sbjct: 422 LRERTHREVQPIPEDKPARRAR 443 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 104/663 (15%), Positives = 217/663 (32%), Gaps = 70/663 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + + + L Q +LG++GS K + L + +++ P A Sbjct: 4 LHQTISKLKGFKEWFDTLSL-HESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q Y E+ E++ E+ V P ++ + V+ + R+ + Sbjct: 63 TQTYEELSEWYDEDIVHL-------------FPVEESLAADFSVVSPDVVSQRIRTLDFL 109 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIID-QRAILRRLAELQYARNDQAF 188 + +V+ +S I L L+ K + L +G I+ A + RL EL Y R + Sbjct: 110 SRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMGSEIESMDAFVERLVELGYRRENMVA 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++DI+P + LR++ FD EV+ + F+ T + + I I P T Sbjct: 170 TPGEFALRGSIVDIYPL-DQEYPLRLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATD 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +E + +A +I K + + + Q + S + Sbjct: 229 LPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVSSIQQAID---AQLENGEIPSNLPY 285 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + +L DY+ D L++D+ I + + K +E G Sbjct: 286 FLECIYP-----EKTSLLDYVSKDAYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIA 340 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + E+ +T L + + + + Sbjct: 341 SGLSLVQDGRKLLKESPLKRTY----------LAIFQKGLGRLSLDAIHPI-TTRTMTQF 389 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + E + V+V + A+ + + + + + + Sbjct: 390 FSQMPMVKVEADRWKKQGATVIVLVDDAKRAQKVEQTFADFDIKSVISNG--------TV 441 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++V + G ++PE + + + L Q I A R Sbjct: 442 LE----GQLQIMV--GKMHNGFELPEDKFAILTERELFNKLTKRAPRNQKISNAER---- 491 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + Y + G+++ + I Sbjct: 492 -------LKSYTELAVGDYVVHVNHGVGVYQGMETLEIGGIHQDYMSIHY---------Q 535 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 G P+ + V +S A K+++L G + + I D+L +L Sbjct: 536 DGGNLFVPVSQIKLVQKYVSSDAKVPKLNKLGGTEWAKTKRKVAAKIEDIADELIELYAK 595 Query: 669 FIA 671 A Sbjct: 596 RDA 598 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 67/452 (14%), Positives = 132/452 (29%), Gaps = 39/452 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L P + + ++ A + Sbjct: 625 DQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTILAE 684 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + ++ ++ + G+ + R + L + +V +H + + Sbjct: 685 QHYENFVQRFSDYPFKIGLLSRFRSK------KEQEETIKKLRKGSVDIVIGTHRLLSKD 738 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + +G + + + ++ATP L S Sbjct: 739 VQFLDLGLLIVDEEQRFGVKHKER--------LKQLKSQVDVLTLTATPIPRTLHMSMLG 790 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYL 466 V D V T + V Q + + I + A +V E + L Sbjct: 791 VRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKADEL 850 Query: 467 EEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 G RV +H + I+ GE+DVLV ++ G+D+P V+ + I +AD Sbjct: 851 RVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENAD 910 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R + K + E +R + + E G Sbjct: 911 YMGLSQ----LYQLRGRVGRTNRIAYAYLMYQPD----KVLTEVSEKRLQAMRDFTELG- 961 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G K + D+V D+ + L + + + +G + Sbjct: 962 --SGFKIAMRDLSIRGAGNLLGKQQHGF-------IDSVGFDLYSQLLSEAVLKKQGKEV 1012 Query: 645 QHAQNLE----FEEAAQIRDQLHQLRELFIAA 672 + + +A + R+ Sbjct: 1013 KSDEETVEIDLQIDAYIPASYIQDERQKIEMY 1044 >UniRef50_C6E4K1 DEAD/DEAH box helicase domain protein n=9 Tax=Proteobacteria RepID=C6E4K1_GEOSM Length = 490 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 63/455 (13%), Positives = 132/455 (29%), Gaps = 48/455 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 P + + L + F I T ++ + Sbjct: 20 GFTQCTPIQEKALPLAL--------TGKDVAGQAQTGTGKTATFLISIFTKLLSQAKTGG 71 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L + Q L + T F+++ + G + + Sbjct: 72 EH---HPRALILAPTRELVVQIEKDAQALGKYTGFNIQAI-YGGVDYMKQRDALKAGADI 127 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L DYL V D + I + M+ Sbjct: 128 VIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFD-----------------MGFIADLR 170 Query: 378 KFEEFEAL--APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPV 428 Q + SAT +E + + ++ ++ Sbjct: 171 FILRRLPPYDKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSR 230 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + LL +R+ R ++ TKR AE L + L + + + D++ +RM+I Sbjct: 231 KEKFPLLLGLLRKMGME--RTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKI 288 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N 547 + D + G +++ ++ G+ + VS V D + + IGR AR Sbjct: 289 LADFKDGTLPIMIATDVASRGIHIEGVSHVINYDLP-----QDCEDYVHRIGRTARAGAE 343 Query: 548 GKAILYGDKITPSMAKAIGETERRRE--KQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G AI + D+ + I + +++ + + + + + ++ Sbjct: 344 GMAISFADEDGAFYIEPIEDFIKQKIPTEWAEDDMFVHDYKRTKPRPRTELPHGRGGKPG 403 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + K RP + S + E + Sbjct: 404 DRGRSGDKGRPGDKGRPAGRSRSASGSDKPAGEKK 438 >UniRef50_A9A5S3 DEAD/DEAH box helicase domain protein n=5 Tax=Thaumarchaeota RepID=A9A5S3_NITMS Length = 440 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 56/398 (14%), Positives = 108/398 (27%), Gaps = 24/398 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ ++ L+ + + V + + Sbjct: 7 LGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQEIQP 66 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ + + G ++ G+ D L Sbjct: 67 KNGIQ-----GLIMAPTRELAMQITDEIKKFGKYTGI-KVATVYGGQGMGLQLDALERGV 120 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV I + L E L + + Sbjct: 121 EIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSLF 180 Query: 393 SATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT L S + + +D V + L+ I+ Sbjct: 181 SATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIK---PT 237 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +V TK D+ ++L + + D+ R + + R G+ D+LV ++ Sbjct: 238 KGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDV 297 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 G+D+P V LV D + IGR AR GKA+ + + Sbjct: 298 ASRGIDVPRVELVINYDVPNQEMA-----YFHRIGRTARAGAKGKAVTFVSYSSVGDWNL 352 Query: 565 IGETERRREKQQ-KYNEEHGITPQGLNKKVVDILALGQ 601 I + K + P L +++ GQ Sbjct: 353 IKRQIKVPIKDLNEEMGIEIAIPDPLKRQMPSRRYGGQ 390 >UniRef50_UPI0001791A51 PREDICTED: similar to vasa-like protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791A51 Length = 641 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 50/389 (12%), Positives = 108/389 (27%), Gaps = 40/389 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER-IVQAMEEIK 264 + ++ + F + ++ + Sbjct: 242 YGNPTPIQKYAIP-IIMNGKDMIASAQTGSGKTAAFVLPILNSLISEPSELVFDYNHCEP 300 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L L + +L+ T G + P Sbjct: 301 QCLILSPTRELASQISSFAFKLSNGTS-IRCRALYGGTAVYHQREKILSGVHIIVATPGR 359 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE--- 381 L D++ + + + + M L Sbjct: 360 LIDFVNRGLITFSSLRFIVLDEADRM-----------------LDMGFTPAIQCIFSDNT 402 Query: 382 -FEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQV 432 + T+ SAT + + + D + G + ++ Sbjct: 403 MVSSAERSTLMFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKK 462 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++L+ + + +V KR A+ + +L E +H D + ER + +RD Sbjct: 463 NELV-ALLNETNDCQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDF 521 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + + VLV + GLD+ V+ V D ++ + IGR R +G+A+ Sbjct: 522 KTKKMKVLVATAVAARGLDIMGVTTVVNFDLP-----KTIEEYVHRIGRTGRLGNSGRAV 576 Query: 552 LYGDK-ITPSMAKAIGETERRREKQQKYN 579 + D +MA + T +R ++ Sbjct: 577 SFYDPDNDSAMAPYLVNTLKRADQNIPEF 605 >UniRef50_C6VVN9 DEAD/DEAH box helicase domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVN9_DYAFD Length = 481 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 55/420 (13%), Positives = 111/420 (26%), Gaps = 40/420 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + I Sbjct: 21 YQQATPIQEQAIPH-ILSGKDLLACAQTGTGKTAAYLIPILDKVAHEANE-------HTG 72 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC---SGIENYSRFLSGRGPGEPP 322 L L ++ + + G + + P Sbjct: 73 ALILVPTRELAVQI-DQQIQGLGYFVGATSIAVYGGNKGPEWDQQKKALTQGADIIIATP 131 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L +L + D H+ + + M LK + Sbjct: 132 GRLIAHLQLGYVHFRDLRHLVLDEADRML-----------------DMGFLGDILKIMSY 174 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRP--TGLLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + + I+ + + + L + Sbjct: 175 LPNERQTLMFSATMPPKIGDLAKRILKEPEEIRLAVSRPADRIDQQFYLAKDEQKLPLLM 234 Query: 441 QRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 N +++ T K E + L + G + SD + ER ++RD + +F Sbjct: 235 HLLKGVENISMVLFTSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFP 294 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 +LV ++L G+D+ +S V D R + IGR AR G A+ + ++ Sbjct: 295 ILVATDVLSRGIDIDNLSHVVNYDVP-----RDPEDYVHRIGRTARAESKGTAMTFINEQ 349 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQG-LNKKVVDILALGQNIAKTKAKGRGKSRP 616 I + +++ E G+ + + K A G R Sbjct: 350 DQKYVLKIERLFEKELEKKSLTAELGLGEAPLFEPPRLRSGGRNKKNRKKPAPGAPSGRK 409 >UniRef50_Q2LY23 Superfamily II DNA and RNA helicases n=2 Tax=Bacteria RepID=Q2LY23_SYNAS Length = 572 Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats. Identities = 53/412 (12%), Positives = 114/412 (27%), Gaps = 17/412 (4%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 + + D L +++ + I + T + Q L + Sbjct: 12 DIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIPLIQLTDTRLKR 71 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + G + G + + L +VV Sbjct: 72 TQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVSQTEELRKGAQVVVATPG 131 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I L E L + + T+ SAT Sbjct: 132 RLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVTPDSKNTLLFSATMPREV 191 Query: 401 LEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLT 455 + + D + G + ++ +R+ A +N ++ T Sbjct: 192 AAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALRRIADMNPELYAIIFCRT 251 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + ++ + L E G LH D+ +R ++ R +LV ++ GLD+ ++ Sbjct: 252 RLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIRMLVATDVAARGLDVNDL 311 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 + V GR R G +I + +AI ++ + Sbjct: 312 THVINYSLP-----EESSGYTHRSGRTGRAGKKGISIALIETREKHKIRAIERCLKKNFE 366 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + + H I + L + + + A+ P + +D Sbjct: 367 EGRIPSGHEICKRRLLSHMEAVKKTEID-----AEHIDPFLPAISKTLESLD 413 >UniRef50_C0YHR5 ATP-dependent RNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YHR5_9FLAO Length = 562 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 47/399 (11%), Positives = 105/399 (26%), Gaps = 21/399 (5%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYP-KTHYVTPRERIVQAMEEIKEELAARRKVL 274 L + ++ + + + I + + + Sbjct: 9 LSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPILDMIDDT 68 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + + T+ +++ + G L Sbjct: 69 ----SRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLKDKPQ 124 Query: 335 LVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++V I I L E L + QT S Sbjct: 125 IIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLFS 184 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAIN 446 AT S + G ++ + V + + L I A N Sbjct: 185 ATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLI--DANPN 242 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ T+ +++ ++L ++G LH D+ +R +++ RL D+LV ++ Sbjct: 243 QYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVA 302 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+ ++ V + GR R G ++ K I Sbjct: 303 ARGLDVNSLTHVIH-----FSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQI 357 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + ++ I + +L +++ Sbjct: 358 KSATKIEIHERTIPTGDDIIKAQVGGVFEKLLTEHEDLF 396 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 103/665 (15%), Positives = 202/665 (30%), Gaps = 92/665 (13%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +RL ++ G G++ + A + L R +VL ++ A ++ ++ Sbjct: 6 PEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLA 65 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 E + + + A V+ E RLS +A+ ++ Sbjct: 66 FLTGE--------------QVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLL 111 Query: 139 VASVS-AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V ++ A+ L + L VG D + L Y R +Q G F +RG Sbjct: 112 VCTIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRG 171 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP--RER 255 ++D + ++D +RVE F +E + + LFD T + V I P + Sbjct: 172 GILDFYSP-AEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLPQFAPGG 230 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +E + +A ++ + L + + D E + E ++ Y + Sbjct: 231 YAGLLEAMDGLIARAKRRKDGAD-------LAKTLEEDRERLAENRSFPALDRYIALVYP 283 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS----- 370 DY P D +++ ES + + L+E G Sbjct: 284 HMATA-----ADYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAGVLAGELSEFA 338 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 E + +V A ++ Sbjct: 339 RTFEELCGVLEEWPVVYLDNFVGAQYPRRPRTLLNLLCK--------------QLPSYGA 384 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY---LHSDIDTVERME 487 ++ +S++ N +V +++ A +L L E G + LH + Sbjct: 385 SLETAVSDLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAVDFLLH-KLPA----- 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G+ ++ + L G++ PE + + G + + + R Sbjct: 439 ------PGKA--VIAVGGLSGGMEYPEARCAVLTEGQAAGVKKKKVKAV-----TNRQKL 485 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G Y D + R + K G+ K V I G ++ Sbjct: 486 G---SYADLSVGDLVVHEHHGIGRYQGMVKMP------VDGIQKDYVKIAYAGADVL--- 533 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQ---QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P + D V + +K+ +L G + A+ + + L Q Sbjct: 534 ------YVPATQLDLVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGLIQ 587 Query: 665 LRELF 669 L Sbjct: 588 LYAQR 592 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 67/460 (14%), Positives = 124/460 (26%), Gaps = 39/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E+ E D L P + + + + Sbjct: 610 FEEQFEYTETDDQLRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAFRAIMKCVLDGKQA 669 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + Y I+ SRF + E + A + + Sbjct: 670 AILVPTTVLARQHYLSAKQRFA--KYPVEIDVVSRFRTPAQMKETLRR----VEAGQIDL 723 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + E + + + + +SATP Sbjct: 724 LIGTHRLFQKDVKFKDLGLL---VIDE-----EQRFGVAHKEKLKEMSRQVDVLTLSATP 775 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-DLLSEIRQRAAINERVLVTTLT 455 L + + D D V L +R+ +V Sbjct: 776 IPRTLNMALSGIRDMSTLEEPPSDRQPVQTYVLEHDWGVLFDAMRRELERGGQVYYLHNR 835 Query: 456 KRMAEDLTEYLEEH---GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + E V H + E +++ + GE DVLV ++ G+D+ Sbjct: 836 VETITRTAARIREMLGEDVTVGVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDI 895 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 + + I DADK G + + I + +A Y K + E +R Sbjct: 896 SNANTLIIEDADKMGLAQ-----LHQIRGRVGRSSRRAYAYLTFRRG---KVLSEVASKR 947 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + E G G + D+ G + +V D+ K L Sbjct: 948 LGAIREFAEFG---SGFKIAMRDLEIRGAGNVLGPEQSGFL-------MSVGYDLYLKLL 997 Query: 633 QQKIHELEGLMMQHAQN--LEFEEAAQIRD-QLHQLRELF 669 ++ + E G Q + AA I D + + Sbjct: 998 EEAVLEERGEKAQIPAECSADLSVAASIPDRYVPSPEQRM 1037 >UniRef50_A6V0P4 ATP-dependent RNA helicase RhlB n=15 Tax=Pseudomonadaceae RepID=A6V0P4_PSEA7 Length = 529 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 53/407 (13%), Positives = 105/407 (25%), Gaps = 41/407 (10%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDD---------IALRVELFDEEVERLSLFDPLTGQI 234 D + + R ++ P+ ++ ++ + Sbjct: 130 EDFVVEPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIG-RAQTG 188 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 F I T + + M L L + LT+ T ++ Sbjct: 189 TGKTAAFLISIITQLLQTPPPKERYM-GEPRALIIAPTRELVVQIAKDAAALTKYTGLNV 247 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 P L D+ + + + + + Sbjct: 248 MTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR----- 302 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALA--PQTIYVSATPGNYELEKSGGDVVDQV 412 L + + QT+ SAT + + + VD Sbjct: 303 ------------MLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWTVDPA 350 Query: 413 VRPTGLLDP---IIEVRPVATQVDDLLSEIRQR--AAINERVLVTTLTKRMAEDLTEYLE 467 + + +E A D + ERV+V K + E L Sbjct: 351 IVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQNNWERVMVFANRKDEVRRIEERLT 410 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + G + D+ +R+ + R G+ VLV ++ G+ + +S V Sbjct: 411 KDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN-----FT 465 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 + IGR R +G +I + + I E R+ Sbjct: 466 LPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEELLGRKI 512 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 102/692 (14%), Positives = 224/692 (32%), Gaps = 92/692 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLED-GLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 A + +L + L G + G + K + + ++ +V+ ++ Sbjct: 2 KAIFEPVYNTAGVEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSDE 60 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + + F N Y P+ D I R+ Sbjct: 61 GKARDMAEDARFFNGGN--------------VMYYPAKDVIFYNADVQGRQIAGERIRCI 106 Query: 128 KAM--------------------LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMI 166 A+ + +V ++ I + P D + + +++L G I Sbjct: 107 AAIIDRLNKSDIVKSGTEKSTEEASDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGDI 166 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +D + ++L + + R +G F +RG +IDIF +D+ +R+EL+D+E++ + Sbjct: 167 LDVEDMAKKLTAMGFERFGMVEAKGQFAIRGGIIDIFS-YTDEAPVRIELWDDEIDSIRA 225 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD + + + +T++P T ++ + I Q +E+I+ E + K+ + + ++++ Sbjct: 226 FDADSQRSIENYKSYTVFPATEFLFTEDEIEQGIEKIRHEKDEQMKLFGADKRKRTKEQI 285 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIP 345 + M ++ + + R +L +Y P L+VVDE Sbjct: 286 EAGNHLNR-MFDDALRTGDYSKFIYTFADRV-----SSLAEYFPKGDTLIVVDEPVRLKE 339 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSA--LDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + +E G+ LPS + Q + + Sbjct: 340 HSDMTFYEYSESMKNRLESGYVLPSQTHMFMDMETAVLSMNGHKQLVLTTLEYTPE---- 395 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 +D + + + L +IR+ VL+ ++ A + Sbjct: 396 --FFGIDYSMHIEARS-----ISSYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRIV 448 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + L G Y T + + + V+V L G + P V I + Sbjct: 449 DDLGRLGIESFY------TEDSNKSMAG-----GLVMVTYGSLHRGFEYPLQGFVCIAEN 497 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 D + +R + +GK I + +Y Sbjct: 498 DIFTEKKRKRVKKKE-------YDGKNIAGF-----NELNIGDYVVHENYGIGQYKGIEK 545 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 I +G+ K + I + A + + D + K++++ G Sbjct: 546 IKVEGVEKDYIKISYADNSNLYVLATQLDRLQKFAGSDVEK--------KPKLNKIGGSE 597 Query: 644 MQHAQNLEFEEAAQIRDQLHQL---RELFIAA 672 ++ ++ L +L R+ Sbjct: 598 WGKTKSKVHSAVEEVAKDLVELYATRQRIEGY 629 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 68/461 (14%), Positives = 138/461 (29%), Gaps = 38/461 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F+E D L + + + + I+ A ++ Sbjct: 639 QEFEEMFPYEETTDQLNAIEDTKHDMESRRVMDRLICGDVGYGKTEIAIRAAFKAVQEGK 698 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + +Q + M + + R + L + Sbjct: 699 QVAYLVPTTVLASQHFTTFEQRMKDFPVTVAQLSSFRTS------AQNKETIEELKKGMV 752 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H + + + + + + +SA Sbjct: 753 DIVIGTHRLLSKDVVFKDLGLLIIDEE--------QRFGVTHKEKIKKLKNNVDVLTLSA 804 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTT 453 TP L S + D V +D + V D+++ I + A N +V Sbjct: 805 TPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELARNGQVYYVY 864 Query: 454 LTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 R ++ +++E V Y H + E +I+ D GE DVLV ++ G+D Sbjct: 865 NRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTIIETGMD 924 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + + + I DAD+ G + L Q GR R+ + K + E + Sbjct: 925 ISNCNTMIIEDADRFGLSQ----LYQLRGRVGRSSRTAYAFLLYRRD----KVLTEVAEK 976 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + + G G + D+ G ++ V D+ K Sbjct: 977 RLSVIREFADFG---SGFKIAMKDLEIRGAGNVLGNSQHG-------HMAAVGYDLYCKM 1026 Query: 632 LQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELF 669 L Q ++ L+G+ ++ + +A + + Sbjct: 1027 LNQAVNNLKGIKNEYEFETTIDVDVDAYIPATYIKSEYQKL 1067 >UniRef50_C8PPF9 ATP-dependent RNA helicase DbpA n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPF9_9SPIO Length = 605 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 58/503 (11%), Positives = 132/503 (26%), Gaps = 75/503 (14%) Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 +L+ L E Y + ++ ++F ++ L+ + Sbjct: 23 LLQGLEEAGY-------------------------IECTPVQEQVFSAGMDGSDLY-VQS 56 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + + + + L L E +L + T Sbjct: 57 QTGTGKTAAYLVTLMQRMLAQGTESR------RPALILVPTRELAVQVEEEAHKLGKYTG 110 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 G + + P + D + + + + I + M+ Sbjct: 111 LRAASF-YGGVGYQQQEEALKNGVDLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMF 169 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL--APQTIYVSATPGNYELEKSGGDVV 409 + QT+ SAT + + + Sbjct: 170 D-----------------MGFYPDLRSLLSVLSKAEERQTMLFSATLNTWVKNLAWEYTI 212 Query: 410 DQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D ++ + ++ LL +R N ++ TK+ E + Sbjct: 213 DAKEITIDADNVTVDEINQKLFHVAADQKMSLLLGILRNEKPEN--TIIFCNTKKTTEIV 270 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L +G +L D+ +R+ II + G+ LV ++ G+D+ ++++V D Sbjct: 271 AKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTCLVATDVAARGIDINDLAMVINYD 330 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + + IGR AR G A + I + + E Sbjct: 331 LPN-----EAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLPDIEKYIEAKIPVV-IPGE 384 Query: 582 HGITPQGLNKKVVDI------LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + + G + G R + + A + Sbjct: 385 EDFEKDRSADQYIRLDRDSADEERGGRFGRKPRPGEKS-RREDKDARRGTKTARPASRTA 443 Query: 636 IHELEGLMMQHAQNLEFEEAAQI 658 + + Q + + A + Sbjct: 444 DSKRKKKGTQGEDKTDRKSADSL 466 >UniRef50_A1JLM2 ATP-dependent RNA helicase n=32 Tax=Enterobacteriaceae RepID=A1JLM2_YERE8 Length = 460 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 70/461 (15%), Positives = 135/461 (29%), Gaps = 37/461 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + F I + + Sbjct: 24 YTEMTPVQAAALP-AILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE--------FVTQ 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E +RL + TQ + G G + S + P + Sbjct: 75 ALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGRI 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 ++L L++ D + + + M L + + Sbjct: 135 QEHLRKKTLVLDDLKILVLDEADRM-----------------LDMGFTDAIDDVIAYTPP 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVDDLLSEIRQRA 443 QT+ SAT + S V G P IE T + L + Sbjct: 178 QRQTLLFSATYPAGIEQISARVQRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVL 237 Query: 444 A--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V TK+ + + E LE G V LH D++ +R +++ VLV Sbjct: 238 SHYQPASCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLV 297 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ GLD+ ++ LV + + IGR R +G A+ + Sbjct: 298 ATDVAARGLDIKDLELVVNFE-----LAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT 352 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A AI + + + K + L ++V + G AK + E Sbjct: 353 RAHAIEDYLQMKLKWTPAEQVSRSANTLLEPEMVTLCIDGGRKAKIR-PSDILGALTGEA 411 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 D+ + + + L+ + +I+ + Sbjct: 412 GLTAADVGKIDMFPVHAYVAIRKASAKRALQQLQQGKIKGK 452 >UniRef50_UPI00016C471F RNA helicase DeaD n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C471F Length = 572 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 59/415 (14%), Positives = 115/415 (27%), Gaps = 18/415 (4%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + + +++ E++ ++ L VERL+ + + + Sbjct: 5 YSEKIHMVETMATETESGFAKLGLDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGR 64 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + + T+ + E G + Sbjct: 65 AATGTGKTAAFSLPILHGLAR--STARTKPTSLILVPTRELAMQVAESVAKYG-QPLGVR 121 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSA 371 + G P L +VV + + + D L E L Sbjct: 122 VLPIYGGAPMDQQIRALDRGIDVVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMG 181 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL------LDPIIEV 425 QT SAT + + + P + Sbjct: 182 FAEDIEAILAATPTERQTALFSATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQ 241 Query: 426 RPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 Q L+ + + L+ T+ ++LTE L G R LH + Sbjct: 242 TAYVVQRQYKLAALGRVLDGESPAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQD 301 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R ++R R G+ ++LV ++ GLD+ ++ V + + IGR Sbjct: 302 ARDRVMRLFRAGQANLLVATDVAARGLDVEHLTHVVNFSLPL-----GIENYVHRIGRVG 356 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 R G AI + +AI +R + + + + L + V I Sbjct: 357 RAGREGVAITVAEPREQGALRAIERHTGQRIEYGQVPTAATLREKRLERTKVAIR 411 >UniRef50_A0D315 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0D315_PARTE Length = 1127 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 36/392 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-QAMEEIKEE 266 ++ +F + + + + + E Sbjct: 122 APTPIQSVVFP-LILSGYDLIGVAETGSGKTFGYLLPGLIQIKCQNYGSNFRNRINGPEI 180 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + + G + + P L Sbjct: 181 LILAPTRELVMQIAQQVSLFMKP-NNLTVATAYGGQNRDQQAQQIKRNPDILVACPGRLK 239 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L L + +++ I + L ++ + Sbjct: 240 DFLQEGILDLSKVTYLVIDEA-----------------DRLLDMGFEDDVRFIVQRTRQD 282 Query: 387 PQTIYVSATPGNYELEKSGGDV-VDQVVRPTGLLDPII-------EVRPVATQVDDLLSE 438 QT++ SAT S D + G + + + Q L + Sbjct: 283 RQTVFFSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLYNNQKLQTLLD 342 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I + IN++VL+ T+ E L+ + + G LH + +R I+ + G+ Sbjct: 343 ILDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECYKKGDTK 402 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD-- 555 +L +L GLD+ ++++V D K I IGR R G+AI + Sbjct: 403 LLCATDLASRGLDVSDITVVINYDFPKY-----FDDYIHRIGRTGRAGRKGRAISFFAIG 457 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 K P MA+ + + ++ + + I+ Sbjct: 458 KDQPQMARELLKFDKINKMKLDVQTMQDISNG 489 >UniRef50_A2ED04 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2ED04_TRIVA Length = 521 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 53/377 (14%), Positives = 116/377 (30%), Gaps = 22/377 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI--KEELAARR 271 + L E +E + + + ++ V + + Sbjct: 90 LNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASFLIPALMHISA 149 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + N L+ + L+ Y GE + L Sbjct: 150 QRKISENDGPIVLVLSPTRELALQTDEVAAQFCVKMGY--KHVCIYGGEDRHRQINKLRF 207 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V I + G++ +RA L E L + + +T Sbjct: 208 HPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLTKDRETF 267 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQR 442 SAT + + + + + G + + + + + + +++ Sbjct: 268 MFSATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVEILKE- 326 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF-DVLV 501 ++++++ TKR + L+++L+ R +H D ER+ + + VLV Sbjct: 327 -NQSKKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGGVLV 385 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+ ++ LV D + IGR AR G AI + Sbjct: 386 ATDVAARGLDVTDIDLVLNYDFP-----GDIEDYVHRIGRTARGEKTGVAITFFTDENRF 440 Query: 561 MAKAIGETERRREKQQK 577 +A + E + + Sbjct: 441 LASDLVEVIKNSAQVPP 457 >UniRef50_Q2BP56 Putative ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP56_9GAMM Length = 427 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 58/440 (13%), Positives = 120/440 (27%), Gaps = 48/440 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + V R F + Sbjct: 24 YEQPTPIQSQAIP-LVLRGDDLLAEAQTGTGKTASFALPIIEKLSKNPIDGY----RPVR 78 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L L + G + P Sbjct: 79 ALVLAPTRELAIQVADNT--LEYGRDLGMRVISVYGGVPVENQIKRLKRGTDILVATPGR 136 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D L + + ++ + + M L + K ++ A Sbjct: 137 LLDLLRQKAISLEKLEYLVLDEADRM-----------------LDLGFIDPIQKIMDYAA 179 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 QT+ +AT + + + + + D L Sbjct: 180 DDRQTLLFTATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSY 239 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + + LV TK+ ++LT+YL + G +H + ER+ ++ + G+ Sbjct: 240 LITE--GKWGQTLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDL 297 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+ + V D + + IGR R G+A+ Sbjct: 298 HVLVATDVAARGLDIESLPYVVNYDLPN-----QPEAYVHRIGRTGRAGETGEAVSLVAP 352 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + I + +++ K + G ++ D + + + K + Sbjct: 353 AEREFLQRIEKLIKQKIKLRPVPRIE----DGKRLEIDDF----ADKPMKRKPAKAKQQK 404 Query: 617 IVEPDNVPMDMSPKALQQKI 636 + ++ D S KA++ + Sbjct: 405 RKKVESYQPDKSKKAIRPSL 424 >UniRef50_Q6BG49 Chromosome undetermined scaffold_1, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=Q6BG49_PARTE Length = 1157 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 64/483 (13%), Positives = 140/483 (28%), Gaps = 60/483 (12%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 + + I+ FP ++ + + F + + + H + Sbjct: 520 EKKKFINPFPIQAQAVPC--------IMSGRDFIGIAETGSGKTLAYLLPLLRHVL---- 567 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + L++ + + ++ + + + + Sbjct: 568 ----------------DQPALKDGDGPIAIIMAPTRELAHQIYVNCRWFTS--ILNLNVV 609 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPS 370 G L +VV I + G + R + E Sbjct: 610 CCVGGAGIAGQLSDLKRGTEIVVCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDL 669 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPII 423 + + K + Q + SAT + + + + G ++ II Sbjct: 670 GFEPQICKIIQNIRPDRQLVMFSATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQII 729 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E + ++ LL ++ +L+ + A+DL + L ++G + LH +D Sbjct: 730 EFMDESDKLYKLLLLFQEWYTKGS-ILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQ 788 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R I D + G ++V ++L GLD+ + LV I IGR Sbjct: 789 DREFTIHDFKKGIRTIMVATSVLARGLDIKHICLVINFSCPNH-----MEDYIHRIGRTG 843 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY------NEEHGITPQGLNKKVVDI 596 R G AI + +A + + E+Q G K + Sbjct: 844 RAGQKGTAITFFTPQDEHLANDLVYLLEKSEQQLPEKLKEYQKSFMEKVKAGEAKIYRNK 903 Query: 597 LALGQNIAKTKAKGRGKS------RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 G + + R + + MD ++ + E+ + + L Sbjct: 904 NRAGGGFTFGPEEEQKFQDFRAQMRKKFGLEGLMMDEQSSDDEKVLEEIAKGKLSEEERL 963 Query: 651 EFE 653 + + Sbjct: 964 KKQ 966 >UniRef50_Q8L7S8 DEAD-box ATP-dependent RNA helicase 3 n=13 Tax=Viridiplantae RepID=RH3_ARATH Length = 748 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 104/358 (29%), Gaps = 27/358 (7%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVL-------LENNKLLEEQRLTQRTQFDLEMMNE 299 + + + R + +L + L + ++ E Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE 199 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARK 358 + + G L +VV I I + Sbjct: 200 IKESAPY----LSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEY 255 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-TG 417 L E L + E Q++ SAT + + + + + + G Sbjct: 256 LVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVG 315 Query: 418 LLDP-------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 D + + +T +LS++ A + +V T TKR A++++ L Sbjct: 316 DQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS- 374 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 LH DI +R + R G+F VLV ++ GLD+P V LV + Sbjct: 375 IATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPN----- 429 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + + GR R G AIL +++ + + Sbjct: 430 DPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLES 487 >UniRef50_C6XHW2 ATP dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHW2_LIBAP Length = 465 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 67/454 (14%), Positives = 134/454 (29%), Gaps = 43/454 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ ++R + F + T +A + Sbjct: 21 YVKPTPIQIKTIPLVLQR-HDVCGIAQTGTGKTASFVLPMLTIL-----EKGRARVRMPR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++ + + G +N P + Sbjct: 75 TLILEPTRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRI 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+ LL+ + + I + L Sbjct: 134 LDHFNRGKLLMNNIEILVIDEADR-----------------MLDMGFIPYIQNITSLVPF 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-----TQVDDLLS 437 QT+ SAT + + S + + IE VA ++ LL Sbjct: 177 TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQ 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ Q + ++ K+ +L LE+ G V +H +ID RM+I+ + + G Sbjct: 237 QLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTI 296 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 ++V +L GLD+P+V V D + I IGR R GKA K Sbjct: 297 QLMVASDLAARGLDIPDVGHVFNFDVPN-----RAENYIHRIGRTGRAGRHGKAFTLVAK 351 Query: 557 ITPSMAKAIGETERRREKQQK-YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 AI + ++ + ++ + A N K+ G + + Sbjct: 352 EDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIAQHN-HARKNNPIPQKSTGFDRRK 410 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + + +KI +L+ + ++ + Sbjct: 411 KNYSSQKSHIPLK---ESEKISKLQQDIQENDAD 441 >UniRef50_C7N178 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N178_SLAHD Length = 657 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 62/443 (13%), Positives = 126/443 (28%), Gaps = 43/443 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + +E F + + Sbjct: 27 YEEPTPIQQQAIPVVLEG-RDLIAAAKTGTGKTAAFALPTMDKLPYAGKGEG-------- 77 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +T + +++ + N+ + G Sbjct: 78 ---------------PVMVIVTPTRELAMQISEVCETIAKRTNH--RVVTLLGGVSYTPQ 120 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + +++ + + D + L E L + + + Sbjct: 121 IKKLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATP 180 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + +D I + L + Sbjct: 181 SERQTLLFSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNA 240 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 IR+ RV+V T TK A++ T L + G +H+D +R + R G+ Sbjct: 241 FIRE--KGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKT 298 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 V+V ++L G+D+PEV V D + IGR R G A+ + Sbjct: 299 HVIVATDVLARGIDVPEVDYVVNYDLPMM-----PEDYVHRIGRTGRAGVAGYAVSFVTP 353 Query: 557 ITPSMAKAIGETERRREKQQKYN-EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 T ++ ++I + + ++ E P G + + K + K GK Sbjct: 354 DTKNLLRSIQKFIGEDIQVMEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKKG 413 Query: 616 PIVEPDNVPMDMSPKALQQKIHE 638 D K ++ Sbjct: 414 GRKHDDRGGKKGGRKHDDREGAR 436 >UniRef50_P21693 ATP-independent RNA helicase dbpA n=380 Tax=cellular organisms RepID=DBPA_ECOLI Length = 457 Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats. Identities = 61/445 (13%), Positives = 118/445 (26%), Gaps = 50/445 (11%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + + P ++ + + F + Sbjct: 22 GYLTMTPVQAAALP--------AILAGKDVRVQAKTGSGKTAAFGLGLLQQIDAS----- 68 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L + E +RL + + G G++ S + Sbjct: 69 ---LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHI 125 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D+L + + + + + + M + Sbjct: 126 IVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD-----------------MGFSDAID 168 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQ 431 F + QT+ SAT SG D + ++ + Sbjct: 169 DVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGK 228 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + LL + +V TK+ + + + L E G+ LH D++ +R + + Sbjct: 229 IP-LLQRLLS-LHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVR 286 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 G VLV ++ GLD+ + LV + + IGR AR +G A Sbjct: 287 FANGSARVLVATDVAARGLDIKSLELVVNFE-----LAWDPEVHVHRIGRTARAGNSGLA 341 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I + A I + + + Q I + I G Sbjct: 342 ISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCI---DGGKKAKMRPG 398 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQK 635 + D+ A+ Sbjct: 399 DVLGALTGDIGLDGADIGKIAVHPA 423 >UniRef50_Q480Z7 ATP-dependent RNA helicase, DEAD box family n=2 Tax=Alteromonadales RepID=Q480Z7_COLP3 Length = 399 Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats. Identities = 58/401 (14%), Positives = 110/401 (27%), Gaps = 39/401 (9%) Query: 193 FRVRGEVIDIFPA--ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F + +ID ++ E + L F++ + Sbjct: 7 FSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGI-AQTGTGKTAAFSLPIINKFG 65 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + I L L + + + + G + S Sbjct: 66 RNKIDIKAKS---TRSLILTPTRELASQIMQNIDDYSDGLG-LKTKVVYGGVGRQAQVDS 121 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 L P L D + + + + M Sbjct: 122 IELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLD-----------------M 164 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPII 423 + QT+ SAT + + D L++ + Sbjct: 165 GFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSV 224 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +V L + + + A E+VL+ TK A+ + + LE+ LHS Sbjct: 225 YHLDKSNKVPLLFNILTK--ADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQA 282 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R E +++ + VLV ++ G+D+ ++LV + R+ I IGR A Sbjct: 283 VREEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLP-----EDPRNYIHRIGRTA 337 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 R G AI + + I + + H Sbjct: 338 RAGKSGMAISFAVENDIRQLTNIENSIGQVIPVVTEQPFHK 378 >UniRef50_C1LZ65 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C1LZ65_SCHMA Length = 840 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 52/352 (14%), Positives = 102/352 (28%), Gaps = 18/352 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR-- 271 + L + +E + + I + + L Sbjct: 302 LGLDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPLIIHIMD 361 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + L+ + L++ +E + + Y+ + G A Sbjct: 362 QPELKLGDGPIGVICAPTRELALQIYSEAKKLAKV--YNLTVVCAYGGGSLWEQQKACEA 419 Query: 332 DGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 ++V I + R E + + QT+ Sbjct: 420 GCEILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPDRQTL 479 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + ++D V G + +E+ Q D L+ R Sbjct: 480 LFSATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWDWLTRNLVRL 539 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 VL+ K +E++ + L+ +V +H D+ +R +I+ + E +LV Sbjct: 540 TTEGSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAPILVAT 599 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 ++ GLD+P + V + R + IGR R G A Sbjct: 600 DVASRGLDIPSIHNVINYEV-----ARDIDTHTHRIGRTGRAGAKGTAYTLF 646 >UniRef50_A9KIC2 DEAD/DEAH box helicase domain protein n=5 Tax=Firmicutes RepID=A9KIC2_CLOPH Length = 483 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 114/381 (29%), Gaps = 21/381 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + +L +E ++ LS+ + + + + A Sbjct: 8 QYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAK----SKTGSGKTAAFAIPIC 63 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + L + + + T+ + + + G + G P L Sbjct: 64 ESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRV-KVPVVFGGFPFDKQALTLKQK 122 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +VV + + + + E L + + + + Sbjct: 123 SHIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIML 182 Query: 392 VSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT G + + V ++ + + + L + + Sbjct: 183 FSATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYK--N 240 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++ T+ M E L L++ LH ID +R+ I D R G F L+ + Sbjct: 241 NPTNAMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATD 300 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + G+D +++ V D S+ + + IGR RN GKAI + + M Sbjct: 301 VAARGVDFDDITHVINYDLPM-----SKETYVHRIGRTGRNGKSGKAISFIREEEKKMLS 355 Query: 564 AIGETERRREKQQKYNEEHGI 584 I + + E + Sbjct: 356 LIEKFTGTPIEIVTPPSEEEV 376 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 113/668 (16%), Positives = 221/668 (33%), Gaps = 73/668 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNK 67 + + + I + G + G + K+ I + +R +++ ++ Sbjct: 2 NLLTKPLLELKEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A ++ +MK + + P+ D I RL Sbjct: 62 IRAGEIQTDMKLY---------------DKKAVIYPAKDIMFFAADVHGNAIISGRLEVL 106 Query: 128 KAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 K ++E + ++ S+ A + + + ++ L+V D + RRL+EL Y + Q Sbjct: 107 KRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQ 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 +G F VRG++ DIFP +++ R+E + +E++ + FD + + + + +YP Sbjct: 167 VSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPA 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 T + ER + ++++ +E K K E R+ + + + G GI Sbjct: 226 TEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGI 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 ++Y + T FDY + + +DE + + R + G+ Sbjct: 286 DSYINYFFDET-----ETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTKGY 340 Query: 367 RLPSALDN--RPLKFEEFEALAPQTIYVSA-TPGNYELEKSGGDVVDQVVRPTGLLDPII 423 L D K + T K + Sbjct: 341 ILSKQADTIWDYKKVLAKLESKSTVLLSLLETRTGDIKAKQRF--------DVLSRN--- 389 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V P + L+ ++ + +V+V + +K AE L E E YL T Sbjct: 390 -VNPYNNSFETLIKDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYL----STD 444 Query: 484 ERMEIIRDLRLGEFDVLVGI--NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER+ + GE V LR G + P + I ++D G + + + Sbjct: 445 ERVPV-----SGE----VVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKKTN------- 488 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 K I + S Y T +G+ K V + G Sbjct: 489 ----RKKKKIDGASIASFSELHEGDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVDYSGD 544 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 P D + S + KI ++ G + ++ + ++I Sbjct: 545 ---------VSIFVPTTNLDVLQKYSSANGAKPKIDKIGGQAWKKTKSKVRQSISEIARD 595 Query: 662 LHQLRELF 669 L +L Sbjct: 596 LVELYAKR 603 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 77/465 (16%), Positives = 139/465 (29%), Gaps = 39/465 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F+E D L +I V + I+ A + Sbjct: 619 QEFEEMFPYDETDDQLNAIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGK 678 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q + M + + + + L A + Sbjct: 679 QVVMLVPTTILAGQHYTTFSKRMQNFPITVEFLSRFKS------AAETKKIKEKLKAGLI 732 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H + + + + + +SA Sbjct: 733 DIVIGTHKVLSAEIKYKDLGLLIIDEE--------QRFGVSHKEKIKKLRENVDVLTLSA 784 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTT 453 TP L S + D V +D I V D+++ I + N +V Sbjct: 785 TPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEHDDEIIREAINREIGRNGQVYYVY 844 Query: 454 LTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 ++ L E G RV + H ++ E I+ + GE DVLV ++ GLD Sbjct: 845 NRVSGIDERAAKLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLD 904 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + V+ + I DADK G + L Q GR R+ K + + E + Sbjct: 905 ISNVNTIIIDDADKMGLSQ----LYQLRGRVGRSSRTSFAFLMYKRD----RMLKEIAEK 956 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R K + G G + D+ G K++ + V D+ K Sbjct: 957 RLAAIKEFTDLG---SGFKIAMKDLEIRGAGNLLGKSQSG-------HMEAVGYDLYCKM 1006 Query: 632 LQQKIHELEGLMMQHAQ---NLEFEEAAQI-RDQLHQLRELFIAA 672 L +++ L+G + + ++ E +A I D + Sbjct: 1007 LNEEVKRLKGEKVAADEFETAVDIEASAYIPADYIRNEVARLEMY 1051 >UniRef50_UPI0001791B2B PREDICTED: similar to vasa protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791B2B Length = 645 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 50/397 (12%), Positives = 107/397 (26%), Gaps = 41/397 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER-IVQAMEEIK 264 S ++ +E + + + + + I Sbjct: 240 FSTPTPVQNYAIPIIIEG-RDLMASAQTGSGKTAAYVLPILHNLLKQPTQLIYDEHHCEP 298 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN-YSRFLSGRGPGEPPP 323 + L + + ++ T + G + P Sbjct: 299 HVVIIAPTRELVSQISECVWKFSKGTD-IRNGLLYGGTSVYHQKSKILQRGVHILTATPG 357 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D++ + + + L + Sbjct: 358 RLIDFVEKGIVTFSSVKFFVLDEADR-----------------MLDMGFKPDIEQVLTNS 400 Query: 384 A----LAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQ 431 + QTI SAT + + + D + G + + + Sbjct: 401 TMPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKFKK 460 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + LL I+ + +V K++A+ YL E +H + ER + +RD Sbjct: 461 KNALLDIIK-EMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRD 519 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + +LV + GLD+ V+ V D ++ + IGR R GKA Sbjct: 520 FKTNRMKILVATAVAARGLDIKGVNYVVNFDLP-----KTIDEYVHRIGRTGRLGNAGKA 574 Query: 551 ILYGDKI-TPSMAKAIGETERRREKQQKYNEEHGITP 586 I + D +A + + ++ +++ Sbjct: 575 ISFFDPESDGPLAAELIKILKQADQEVPSFLNDAAER 611 >UniRef50_A7K1S7 ATP-dependent RNA helicase n=13 Tax=Vibrionales RepID=A7K1S7_VIBSE Length = 416 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 57/415 (13%), Positives = 108/415 (26%), Gaps = 36/415 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ +E F++ V E + Sbjct: 28 YSQPTPIQSHTIPYILEG-KDIVGGANTGSGKTAAFSLPILQKIVQQDETNHR-RGNFVS 85 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + + + + + G + + P Sbjct: 86 HLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCDIIVATPGR 145 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + ++ + + + + + M K Sbjct: 146 LLDLVSSNAIKLDQVKTLVLDEADRMLSL-----------------GFTEELNKILALLP 188 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-----PIIEVRPVATQVDDLLSEI 439 QT+ SAT + S + D V + + + L I Sbjct: 189 EKKQTLLFSATFPDKVTTLSQHLLRDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLI 248 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +Q + L+ K L + L + G H D R ++ + GE V Sbjct: 249 KQH--QWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ ++ GLD+ ++ +V D RS + IGR+ R G + D Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLP-----RSPADYMHRIGRSGRAGEVGLGLSLIDYDD 361 Query: 559 PSMAKAIGETER---RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 K I + + RE+ + + E + G K K Sbjct: 362 YHHFKVIEKKNKFQLEREQVEGFEVEDDQSEAYFLPMKPRAKPAGTGKKKKKRNQ 416 >UniRef50_B8DQS6 DEAD/DEAH box helicase domain protein n=7 Tax=Deltaproteobacteria RepID=B8DQS6_DESVM Length = 990 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 56/439 (12%), Positives = 119/439 (27%), Gaps = 52/439 (11%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 R ++ P ++ + + + F + Sbjct: 122 EAAARAGWTNLMPVQTHALPY--------IFAKRDLMVQSRTGSGKTGAFLLPLLERLSP 173 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + L L E + L + T Sbjct: 174 DEPAVQ--------ALILVPTRELALQVEYEARVLFEGT-------------------GL 206 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPS 370 ++ G D L LVV + + DR R E L Sbjct: 207 NVAAVYGGVGYGKQMDALRDGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSI 266 Query: 371 ALDNRPLKFEEFEALAPQT-IYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDPI 422 + + + + SAT + L +G + + + Sbjct: 267 GFYPDMKEIQRYLPKRRISAYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHL 326 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + L+ I + ++ TK +T L+ G L +D+ Sbjct: 327 YCETKPMDKDRALVRII--ESENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQ 384 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R +++ LR G LV ++ G+D+P++S V + + S I GR Sbjct: 385 AKREQVLGSLRKGGVRFLVATDVAARGIDIPDLSHVILYEPP-----EDRESYIHRAGRT 439 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + G I D I + I + + + + ++ + ++ + A + Sbjct: 440 GRAGSAGTVISLVDIIQKLELQRIAKHYKIDIQHRPTPDDESVARIAGDRLTALLEARLR 499 Query: 602 NIAKTKAKGRGKSRPIVEP 620 + + + + P+ Sbjct: 500 ARTGLERERQQRFAPLARA 518 >UniRef50_C5CB97 DNA/RNA helicase, superfamily II n=23 Tax=Bacteria RepID=C5CB97_MICLC Length = 611 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 51/392 (13%), Positives = 106/392 (27%), Gaps = 43/392 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV- 250 ++ FP ++ + + + F I + Sbjct: 50 EALEAKGIVHPFPIQAMTLPVAL--------GGHDIIGQAKTGTGKTLGFGIPALQRAIG 101 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + + + + +++ +L + Sbjct: 102 PGEPGWDGLEAKGTA-------------GAPQALIVAPTRELAVQVAGDLTAAAAR--RP 146 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLP 369 ++ G + L +VV I + R D L E L Sbjct: 147 LRIATIYGGRAYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLD 206 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------- 420 QT+ SAT + + + + Sbjct: 207 LGFLPDVETLLAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDI 266 Query: 421 -PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 ++ + + + ++ R ++ T TKR A + + L G LH D Sbjct: 267 RQLVYRAHHMDKDELVARALQAEGR--GRTIIFTRTKRTAARVADELTARGFAAGALHGD 324 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + R + +R R G+ D+LV ++ G+D+ +V+ V A E++ + + Sbjct: 325 LGQGAREQALRAFRNGKVDILVATDVAARGIDVDDVTHVFNFQAP-----EDEKTYVHRV 379 Query: 540 GRAARNV-NGKAILYGDKITPSMAKAIGETER 570 GR R G A+ D I + Sbjct: 380 GRTGRAGNKGVAVTLVDWEDMPRWSLIDKALG 411 >UniRef50_A2QIL2 Pre-mRNA-splicing ATP-dependent RNA helicase prp28 n=39 Tax=Leotiomyceta RepID=PRP28_ASPNC Length = 810 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 55/405 (13%), Positives = 118/405 (29%), Gaps = 27/405 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY--VTPRERIVQAMEEI 263 + ++ + + F + + + + + Sbjct: 392 YKEPTPIQRAAIP-IAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADG 450 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L +E ++ T F++ + G+ + YS P Sbjct: 451 PYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSI-VGGHSLEEQAYSLRDGAEIIIATPG 509 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN--------- 374 L D + L++ +V + + M + + + + Sbjct: 510 RLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAENPLA 569 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRP 427 + QT+ +AT + + + G ++ +E+ Sbjct: 570 MSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIA 629 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L +I ++V KR + + +++ G LH +R Sbjct: 630 GEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQDQREA 689 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + +R G DVLV +L G+D+P+VSLV + S S IGR R Sbjct: 690 ALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNM-----ATSIESYTHRIGRTGRAGK 744 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 G AI + + + + + + EE +K Sbjct: 745 SGVAITFLGNEDADVMYDLKQMLMKS-PISRVPEELRKHEAAQSK 788 >UniRef50_Q12QV2 DEAD/DEAH box helicase-like protein n=27 Tax=Gammaproteobacteria RepID=Q12QV2_SHEDO Length = 433 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 51/421 (12%), Positives = 104/421 (24%), Gaps = 17/421 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE-LAARRKVL 274 E + ++ V I + + L + Sbjct: 8 FAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQKMHERP 67 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + + T+ + + L+ G T L Sbjct: 68 MTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLT-IYGGMKMATQAQKLKQGAD 126 Query: 335 LVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++V + I L E L K + Q + S Sbjct: 127 IIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNLLFS 186 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA--AINER 448 AT + + + + + + + + + ++ Sbjct: 187 ATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGTKNWQQ 246 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VLV T T+ A+ L L G +H + R +R+ G+ VLV + Sbjct: 247 VLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVATEVAAR 306 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD+ + V D + IGR R G AI + + I + Sbjct: 307 GLDIQGLEYVVNYDLPFL-----AEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 ++ ++ + I K + ++ + E + + Sbjct: 362 LIGQKIRRITVPGYE---VSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRRV 418 Query: 628 S 628 Sbjct: 419 K 419 >UniRef50_Q17W71 ATP-dependent RNA helicase n=19 Tax=Helicobacter RepID=Q17W71_HELAH Length = 494 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 58/395 (14%), Positives = 126/395 (31%), Gaps = 28/395 (7%) Query: 204 PAESDDIALRVELFDEE------VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 P E DD A R F++ ++ + + + + + + Sbjct: 11 PIEIDDDAYRKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGT 70 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A L+NN +E +T + +++ +E+ Sbjct: 71 GK----TAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTK--TKTVCVY 124 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET-LVEYGFRLPSALDNRP 376 G+ +++ + +++ + + K L E L + Sbjct: 125 GGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDI 184 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVA 429 + ++ Q + SAT + + + + + + V Sbjct: 185 EEIFDYLPSEAQILLFSATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEH 244 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + ++ + +A E+ +V T TK+ A++L ++L + LH D+D +R I Sbjct: 245 ERSEAIMHLLDTQA--PEKSIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASI 302 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG 548 + + DVLV ++ GLD+ VS V + S I IGR R G Sbjct: 303 MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPL-----NTESYIHRIGRTGRAGKKG 357 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 AI + + + + + + Sbjct: 358 MAITLVTPLEYKELLRMQKEIDSEIELFEIPTINE 392 >UniRef50_A0JYP4 DEAD/DEAH box helicase domain protein n=14 Tax=Actinomycetales RepID=A0JYP4_ARTS2 Length = 585 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 56/411 (13%), Positives = 107/411 (26%), Gaps = 37/411 (9%) Query: 182 ARNDQAFQR--GTFRVRGEVIDIFPAESDDIALRVELFDEEV-ERLSLFDPLTGQIVSTI 238 + + ++ + VR ++++ ++ V Sbjct: 29 EKPHEIEEKSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKT 88 Query: 239 PRFTIYPKTHYVTPRERIVQAME--EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 F I V + + + L L + R + Sbjct: 89 LGFGIPALQRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAK-DLENAARKRNARIA 147 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G + S P L D L + + V + + M Sbjct: 148 TIYGGRAYEPQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDL--- 204 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-- 414 QT+ SAT + + + Sbjct: 205 --------------GFLPDVETLIAGTPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRA 250 Query: 415 ----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEE 468 GL I D + + + R ++ T TKR A + E L + Sbjct: 251 ADPDDEGLTKRDIRQLIYRAHSMDKIEVVARILQARGRGRTIIFTKTKRTAAKVAEELVD 310 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +H D+ R + +R R + DVLV ++ G+D+ +V+ V Sbjct: 311 RGFAAAAIHGDLGQGAREQALRAFRNNKVDVLVATDVAARGIDVDDVTHVINYQC----- 365 Query: 529 LRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + E+ + +GR R G A+ + D I + + Sbjct: 366 VEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPRWGLINKALGLSVPEPVE 416 >UniRef50_A9GSG9 Family membership n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GSG9_SORC5 Length = 812 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 63/501 (12%), Positives = 128/501 (25%), Gaps = 73/501 (14%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + LAE+ Y +++ ++ E V R Sbjct: 38 ELRETLAEIGYVH-------------------------PTPVQLAVW-EPVTRGRDAVVQ 71 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F + H V + + LA L E +RL Sbjct: 72 ARTGTGKTAAFGLPIVDHAV-------KRSLAQAQVLALCPTRELALQVSAEVERL---- 120 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG- 349 + + G P D L A ++V + + Sbjct: 121 ---------------GKRKGIKVVAVYGGAPMQRQIDALAAGAQVIVGTPGRVLDHLRRG 165 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 R L E L + QT+ SAT + + Sbjct: 166 TIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLLFSATLPPDIERIARSKLR 225 Query: 410 DQVVRP-----TGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 G L ++ L+ I E ++ TK E + Sbjct: 226 SPEFITLSGDAVGALQIQHYVYLITGDKLTSLVRII--EVENPENAVIFCNTKDETEAVA 283 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+ G +L+ D+ +R +++ R G LV ++ G+D+ ++ V D Sbjct: 284 GALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVATDVAARGIDISHLTHVINYDF 343 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + + GR R G AI R K + ++ Sbjct: 344 P-----QDAEAYVHRTGRTGRAGRTGTAIALITPQDVGPL----YILRLTYKIRPLEKQL 394 Query: 583 GITPQGLNKKVVDIL--ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + D++ ++K + + + + L+ + Sbjct: 395 PSEGELKTRAEADLVAMLAEAFLSKGTHRDDLSLARRLLTHDQAEAIVAGLLRDHLGARP 454 Query: 641 GLMMQHAQNLEFEEAAQIRDQ 661 + + ++ + + Sbjct: 455 TAQEEASAARRAQQPQRAAAR 475 >UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Poaceae RepID=RH9_ORYSJ Length = 628 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 60/363 (16%), Positives = 103/363 (28%), Gaps = 26/363 (7%) Query: 238 IPRFTIYPKT--HYVTPRERIVQAMEEIKEEL---AARRKVLLENNKLLEEQRLTQRTQF 292 V + + R K L + Sbjct: 125 QRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTREL 184 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MY 351 ++ E S +E G P L +V+ I + Sbjct: 185 AKQVEREFSDSSNVETI-----CVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKRGAL 239 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R L E L D + QT+ SAT + + + + Sbjct: 240 NLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNP 299 Query: 412 VVRP-TGLLDP-------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G D + + +L E+ + A + +V T TKR A+ L+ Sbjct: 300 VTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLS 359 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + + + LH DI +R ++ R G F++L+ ++ GLD+P V LV + Sbjct: 360 YTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFEL 418 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 S + GR R GKAI+ + + + + Sbjct: 419 PN-----SSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKFTELPKINVE 473 Query: 583 GIT 585 G Sbjct: 474 GSD 476 >UniRef50_A8FG79 DEAD/DEAH box family ATP-dependent RNA helicase n=2 Tax=Bacillus pumilus RepID=A8FG79_BACP2 Length = 480 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 51/420 (12%), Positives = 123/420 (29%), Gaps = 19/420 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + L D+ + L T V + K + + Sbjct: 8 QYPLSDDLKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGK----TAAYGLPIC 63 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 +++ + + + T+ + + G + + P L Sbjct: 64 EMVDWAENKPQALILVPTRELAMQVKQDLTSLGRLKRIKA-AAIFGKAPFQAQKIELAQK 122 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +V + + + + L E L ++ ++ ++ Sbjct: 123 NHIVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSML 182 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AIN 446 SAT + + S + V + P I + T+ + S +++ Sbjct: 183 FSATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENP 242 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ T+ +LT L+E +H + +R ++ + + GEF L+ ++ Sbjct: 243 DSCIIFCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIA 302 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ +++ V D + I GR R GK I + + + + Sbjct: 303 ARGIDVSDMTHVIHYDLP-----YEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDEL 357 Query: 566 GETERRREKQQKYNEEHGIT--PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 E K Q Y + + +K+ + A + + + Sbjct: 358 KEEAGIDFKTQPYPTKEDAEQHVERFEEKIETPIQKENKQAGVEKDIMKLYFNGGKKKKL 417 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 214/695 (30%), Gaps = 82/695 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++ L L + G+ +T +A P + L Sbjct: 7 ATVLAEITAIAPVQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTT 66 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + +++++ + V P+SD + S I RL Sbjct: 67 DAALRAHEDLRQWIGTDRVFL-------------FPASDALPYEHMSTGADILTARLRVL 113 Query: 128 KAMLERR-------DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + V+VA V A+ PD + L GM ++ RL + Sbjct: 114 HRLAAFNAGDVDVAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAM 173 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + G RG +ID+F DD+ LR+E F +E++ L FDPLT + + I Sbjct: 174 GYRYAPTVEEPGEVNRRGGIIDVFSPG-DDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIR 232 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I P + R + E + A +L + L E + + Sbjct: 233 AAIIGPPHEFPLWRRDVA------LERMRAIDTSMLRHEALDEWLQAFDHIRN------- 279 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G ++ F + P TL +LP +V+ E+ + + + R+ Sbjct: 280 GERFEGRALFAPFFRDN--PQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRR 337 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----- 414 ++ G + E T+ + + + D Sbjct: 338 QQIDAGELPAAFPRPYLRWHELMALAEAHTLVNLSNNEHP---FWDVLLSDPAPLPPSFS 394 Query: 415 ---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 G P+ + R V D + L +R+ +D+ E L GE Sbjct: 395 FGEQNGNPAPLTDTRNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRA-GE 453 Query: 472 RVRYLHSDIDTVERMEII------RDLRLGEFDVLVGINLLR----EGLDMPEVSLVAIL 521 RV + R++ + RD G +V+ G+ +L EG MP ++L Sbjct: 454 RVVLIT---PQAARLQELVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYS 510 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 D + G+ + R R +A I E + Sbjct: 511 DTEIFGWRQRRIIAD-RRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIAVYEGLIRR--- 566 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + G+ + +++ + P+ + D V + ++ ++ L Sbjct: 567 ---SVGGIERDYLNLRYAEGDRL---------YVPVDQIDRVSRYIGAGDVEPQLTRLGT 614 Query: 642 LMMQHAQNLEFEEAAQIRDQLHQLRELF---IAAS 673 + A+ + ++L L + Sbjct: 615 QDWERAKRKARAAVQDLAEELITLYAQRQLAEGHA 649 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 58/433 (13%), Positives = 117/433 (27%), Gaps = 39/433 (9%) Query: 217 FDEEVER----LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + E+E + D L I P V + ++ A + Sbjct: 656 WQRELEASFPYVETPDQLKAIIDVKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQD 715 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q M + + R + + L Sbjct: 716 GKQVAVLAPTTVLVQQHYDTFSRRMAAFPVRIDMISRFRS------AKEQSEIVQRLARG 769 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + ++ +H + + + E R + + + + Sbjct: 770 EIDIIIGTHRLLSKDVVFKDLGLL---VIDE-----EQRFGVRHKERIKQLRTNVDVLTL 821 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLV 451 +ATP L + + D + T D I V + L+ I + +V Sbjct: 822 TATPIPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVLPYDERLIREAILRELDRGGQVYF 881 Query: 452 TTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + + + L H ++ + ++ D G DVLV ++ G Sbjct: 882 VHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESG 941 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 LD+P + + I DA G + L Q GR R+ K Sbjct: 942 LDVPNANTIIIDDATNFGLAQ----LYQLRGRVGRSTQRAYAYLFYKSERPSTP------ 991 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 +++ + +E G + D+ G + V D+ Sbjct: 992 -EAQERLRAIQEATELGAGFRIAMRDLEIRGAGNLLGAEQSG-------HIAAVGFDLYS 1043 Query: 630 KALQQKIHELEGL 642 + L+Q + L+ Sbjct: 1044 RLLEQAVRTLKQR 1056 >UniRef50_A3FQ46 U5 snRNP 100 kD protein, putative n=2 Tax=Cryptosporidium RepID=A3FQ46_CRYPV Length = 529 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 53/385 (13%), Positives = 108/385 (28%), Gaps = 36/385 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++++ +L + F I ++ + +E Sbjct: 162 YEKPTPIQMQCIP-IGLKLRDMIGIAETGSGKTIAFLIPLISYVGNKPILDYKTSQEGPY 220 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEM---MNELGYCSGIENYSRFLSGRGPGEPP 322 L L E Q+L +T + G + +S P Sbjct: 221 GLILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGGRNIDQQAFSLRKGVEIIIATP 280 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D L ++V S+V + + M + + Sbjct: 281 GRMQDCLEKTLTVLVQCSYVILDEADRMIDLG-----------------FQDSLNFILDQ 323 Query: 383 EALAPQ--TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVD 433 Q T SAT + + + G + I+ + Sbjct: 324 IPPEIQRTTHMFSATMQKELENIAKRYLNSPINVTIGDIGAGKKSIQQILNFISENKKKS 383 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L++ + + ++V K+M + + + HG + LH R + + Sbjct: 384 TLINTLNNKELAVPPIIVFLNQKKMVDIVCREIVSHGFKATSLHGGKMQEVRENSLNLFK 443 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G FD+LV ++ G+D+ ++LV D +S + IGR R G AI Sbjct: 444 SGVFDILVSTDVAGRGIDINNINLVINYDFP-----KSIDTYTHRIGRTGRAGKNGIAIS 498 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + + + + Sbjct: 499 FITPEDSGLFPELKKILLTSNNPIP 523 >UniRef50_A5CVQ6 ATP-dependent RNA helicase DeaD n=2 Tax=sulfur-oxidizing symbionts RepID=A5CVQ6_VESOH Length = 608 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 64/467 (13%), Positives = 133/467 (28%), Gaps = 30/467 (6%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R+ L + + L T + + + + Sbjct: 16 RLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGK----TAAFVLPLL 71 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + N + + T+ ++E + G+ L Sbjct: 72 DKINLNINAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRG 131 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +V + I + D + L E L + + Q Sbjct: 132 VHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIAL 191 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAA 444 SAT N + + + + + + + L+ I Sbjct: 192 FSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRIL-EVT 250 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + + +++ TK + +LTE L G ++ DI +R II D + G+ D+L+ + Sbjct: 251 VFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATD 310 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+ +S V D + S + IGR R G+AIL+ M Sbjct: 311 IAARGLDVERISHVVNYDIP-----QDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLN 365 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-------IAKTKAKGRGKSRP 616 I R++ + I + + +I+ N + + Sbjct: 366 TIEHVTRQKITPIELPSVKIINAKRIETFKQNIIQTINNQNLEIFKKLVGEFQQENPKIE 425 Query: 617 IVEPDNVPMDMSPK----ALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 I + + ++ L +K L + + A ++ Sbjct: 426 ISQISSALAYIAQGNEPLLLSEKESNLGFNQTPKEKIIISIRAKPLK 472 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 263/660 (39%), Positives = 361/660 (54%), Gaps = 83/660 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMV 62 L + F P+GDQP AI + L +D L G TG+GKTF +ANVI +PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID---QRAILRRLAE 178 +R AT+A++E +VVVVASVS +YG+G P Y+ L L + A+ RL E Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTE 248 Query: 179 -LQYA-------------RNDQAFQR---GTFRV-----RGEVID---IFPAESDDIALR 213 L Y +D R G + RG + ++P +D L+ Sbjct: 249 GLLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPY-EDSPLQ 307 Query: 214 VELF--DEEVERLSLFDPLTGQIVSTIPRFTI------------------YPKTHYVTPR 253 +L V L T + + + + +P+ H++TP Sbjct: 308 FDLDKEGRLVGFLRTPQ-GTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITPP 366 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 ER+ A I EL R L N +E +RL QRT D+ ++NELG+C G E+YSR L Sbjct: 367 ERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRHL 426 Query: 314 SGRGPGEPPPTLFDYLPA-------------------------DGLLVVDESHVTIPQIG 348 GR GEPP TL DYL LLV DESHV +PQ+ Sbjct: 427 GGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQLR 486 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSATPGN E E + Sbjct: 487 AMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSRM 546 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV LTK EDL YL E Sbjct: 547 VDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLNE 606 Query: 469 HG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA G Sbjct: 607 IGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVPG 666 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGITP 586 F+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRREKQ+ +NE +GI P Sbjct: 667 FMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIVP 726 >UniRef50_Q04Q15 Superfamily II DNA and RNA helicase n=6 Tax=Leptospira RepID=Q04Q15_LEPBJ Length = 549 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 54/392 (13%), Positives = 122/392 (31%), Gaps = 39/392 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + +E L F I +T + Sbjct: 21 YTELTPIQEKSIPHGLEG-KDIIGLAQTGTGKTVAFLIPVVHTILT-------KNIQKVS 72 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E ++L + + + G +N P L Sbjct: 73 ALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKDLEGLNGIIVATPGRL 132 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + + + + + + L Sbjct: 133 IDMVKSGSIDISNVEFFVLDEADR-----------------MLDMGFIQDIRWLLHKCKN 175 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + V +D I ++ + + Sbjct: 176 RKQTLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNL 235 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I + ++ T K + L ++G + + S++D +R+ ++RD + G++ Sbjct: 236 IVNSKDEG-QGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYR 294 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +V ++ G+D+ + +V D + + + IGR AR GKAI + + Sbjct: 295 YMVATDVASRGIDVENIDIVYNYDLP-----QDTENYVHRIGRTARAGRMGKAIGFCSES 349 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + I + +++ + + NEE+ P G Sbjct: 350 DYVELEKIEKYLKQKIEILEVNEEYIQFPTGK 381 >UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Piroplasmida RepID=Q4MYL1_THEPA Length = 707 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 63/438 (14%), Positives = 124/438 (28%), Gaps = 36/438 (8%) Query: 166 IIDQRAILR---RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD-DIALRVELFDEEV 221 D+ ++ +L Y + + G R E + + V FDE V Sbjct: 269 DWDKEELVEIKKDFYDLSYEADSR---PGEEIERILKAHNIIIEGEHPLPKPVTTFDEAV 325 Query: 222 ER------LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + + + + + + + Sbjct: 326 FNQQIQNIIKESNFTEPTPIQKVGWTSCLTGRDIIGVSQTGSGKTLTFLLPGLLHLLAQP 385 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + T+ + E + L G L + Sbjct: 386 PVGTGGPIMLILSPTRELCLQIAEEARPYSR-LLNLRLVPIYGGASKFAQVRELQNGAEI 444 Query: 336 VVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V + + G + +R + E L + + K QT+ SA Sbjct: 445 MVATPGRLLEFLSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSA 504 Query: 395 TPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAI 445 T + + + + G + +E D L + Sbjct: 505 TWPSEIKRLASEFCKANSIYIQVGDLELTANPNIRQNVEFPNSYEVRDKLFDFLGS-IPP 563 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++VL+ + K A+ LT L + LH + +R I+ R G+ +VLV ++ Sbjct: 564 EKKVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVLVATDV 623 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-----DKITP 559 GLD+ ++ V LD +S I IGR R G+++LY Sbjct: 624 AARGLDIKDIDYVINLDVP-----KSLLDYIHRIGRTGRGNSKGESLLYFPIDTLTPAKV 678 Query: 560 SMAKAIGETERRREKQQK 577 A+ + + + + Sbjct: 679 KFAQDLSKLLSKVNQTVP 696 >UniRef50_C6X450 Cold-shock DEAD-box protein A n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X450_FLAB3 Length = 571 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 51/384 (13%), Positives = 110/384 (28%), Gaps = 16/384 (4%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L L + + I + TI + + + Q + ++++ Sbjct: 12 EILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLPILDMIDDGSRK 71 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + + + + G L ++V Sbjct: 72 IQFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITDQIRSLRDKPQIIVGTPG 131 Query: 342 VTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I I + L E L + T SAT Sbjct: 132 RVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPETKHTYLFSATMNKEV 191 Query: 401 LEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 S + G ++ + V + + L I A N+ ++ Sbjct: 192 ERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI--DANPNQYSILFC 249 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 T+ +++ ++L ++G LH D+ +R +++ RL D+LV ++ GLD+ Sbjct: 250 RTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDVAARGLDVD 309 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 ++ V + GR R G ++ K I + + Sbjct: 310 SLTHVIHYSLP-----DDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKMSTKID 364 Query: 573 EKQQKYNEEHGITPQGLNKKVVDI 596 ++K I + + Sbjct: 365 IVEKKVPTGDAIIKAQVGGVFEKL 388 >UniRef50_B0EQ53 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Entamoeba RepID=B0EQ53_ENTDI Length = 585 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 101/376 (26%), Gaps = 27/376 (7%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 I ++ + ++ L + I + + + Sbjct: 192 IKNTYETPTPIQCASIPIAL-KMRDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSA 250 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 L L E +L G + Sbjct: 251 SGPYALILAPTRELALQIQQETLKLATPFG-LRVCCCIGGESIQPQIEELSNGAEIVVAA 309 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D L L++ V + + M + + LPS D + Sbjct: 310 PGRLKDLLSQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYI--FSELPSVKDGSTEEIIS 367 Query: 382 FE-------ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP 427 E T SAT + + + + + G + + Sbjct: 368 MEKENASGNPSTRTTFMYSATMPSTLEKITTEYLRRPITISIGKTGNVAENVKQNVVWVE 427 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L+ I+ + +V ++ E++ LE+ +H +ER + Sbjct: 428 DNMKKRKLVQVIKSSSPP---TIVFVNQQKTVEEICLLLEKEKINCVGIHGGKRQIERTD 484 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + + ++ V+V N+L G+D+ V+ V + + +GR R Sbjct: 485 ALEGFKRKKYPVMVATNVLSRGIDIESVANVINYEMP-----QKIEEYTHRVGRTGRAGK 539 Query: 548 -GKAILYGDKITPSMA 562 G AI + ++ Sbjct: 540 GGNAITFINENDGKEV 555 >UniRef50_Q30SZ2 DEAD/DEAH box helicase-like protein n=2 Tax=Campylobacterales RepID=Q30SZ2_SULDN Length = 432 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 57/428 (13%), Positives = 118/428 (27%), Gaps = 15/428 (3%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 + + + T I K+ + + R + ++ + Sbjct: 12 LLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQRLRKTSDDKQ 71 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T+ + E ++ G+ + L +V+ Sbjct: 72 RALRGLVIAPTRELSIQIYEDLQSYAKNMGI-NIAVLVGGKDLESQQKILKEGVDIVIAT 130 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + L E L + QT+ SAT + Sbjct: 131 PGRVLEHVDKGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQTLLFSATFSDK 190 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTT 453 + S + T + ++ + LL+ I +VLV T Sbjct: 191 VRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIGSRNF-RQVLVFT 249 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK A+ L L++ G + +H D R++ + + + G+ VLV ++ GLD+ Sbjct: 250 RTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATDIASRGLDIE 309 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 E+ V + + +GR R G AI D K I + + Sbjct: 310 ELPFVINYELPSI-----PEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDIEKLIGMK 364 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 Q+ P ++ ++ R + P Sbjct: 365 IPQEIIAGFEP-DPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGSKKSANYKKPVTT 423 Query: 633 QQKIHELE 640 +++ Sbjct: 424 KKRKTSKR 431 >UniRef50_D1BLQ6 DEAD/DEAH box helicase domain protein n=3 Tax=Veillonella RepID=D1BLQ6_VEIPT Length = 432 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 45/365 (12%), Positives = 100/365 (27%), Gaps = 21/365 (5%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 DE + L + ++ + + L + + + Sbjct: 11 DELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAF---LLPILQRVHTD 67 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + + ++ +E + + G+ L +++ Sbjct: 68 VHQEQVLIIAPTRELIKQISDEAKELGS--ILNVDILPLIGGKTIEAQLQQLGRRPQVIL 125 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + D R+ L E L Q + SAT Sbjct: 126 GTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLFSATI 185 Query: 397 GNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + + +D + + + L+ I Sbjct: 186 PDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMI--EDDNPFLA 243 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V + A L+ L G + +H D+ R +I+RD + +LV ++ G Sbjct: 244 IVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARG 303 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 +D+ ++ V D R I IGR R +G A+ + + + I Sbjct: 304 IDIEGITHVYNYDVP-----RDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIERA 358 Query: 569 ERRRE 573 + Sbjct: 359 IQATL 363 >UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=root RepID=IF4A3_HUMAN Length = 411 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 59/375 (15%), Positives = 112/375 (29%), Gaps = 20/375 (5%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + + + + I + + + L+ Sbjct: 48 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGK----TATFSISVLQCLDIQ 103 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + T+ + + G + + G L +V Sbjct: 104 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC-IGGTNVGEDIRKLDYGQHVVAG 162 Query: 339 ESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I R + L E L + + A Q + +SAT Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222 Query: 398 NYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + LE + + D + + D L ++ I + + Sbjct: 223 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI-TQAV 281 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKR + LTE + E V +H D+ ER I+++ R G VL+ ++ GL Sbjct: 282 IFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 341 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+P+VSL+ D + I IGR+ R G AI + + + I + Sbjct: 342 DVPQVSLIINYDLPN-----NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 396 Query: 570 RRREKQQKYNEEHGI 584 + + N I Sbjct: 397 STQIDEMPMNVADLI 411 >UniRef50_C0W1P0 Superfamily II helicase n=2 Tax=Actinomyces RepID=C0W1P0_9ACTO Length = 616 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 54/420 (12%), Positives = 112/420 (26%), Gaps = 23/420 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + ++ T + + V + + A Sbjct: 10 LNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPMLAHIDP 69 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + T+ + G L + Sbjct: 70 GFNAVQA----IVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKSGA 125 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL--APQTI 390 +VV I I + + L E L T Sbjct: 126 QVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRITA 185 Query: 391 YVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 SAT ++ + + D V + V P ++ L + R Sbjct: 186 LFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLATRD 245 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V T+ A+++ + G + D+ ER I+ LR G DVLV Sbjct: 246 ED--AAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVAT 303 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ + LV D R + + +GR R G+++ + Sbjct: 304 DVAARGLDVERIGLVINFDVP-----RETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFRL 358 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 + I + + ++ ++ + V + + + + R E + Sbjct: 359 RQIEKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTTEIE 418 >UniRef50_A8XFS8 C. briggsae CBR-GLH-1 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XFS8_CAEBR Length = 817 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 46/397 (11%), Positives = 98/397 (24%), Gaps = 50/397 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAMEEIK 264 + ++ + + F + + Sbjct: 416 YNKTTPIQ-QFALPLIRDGHDIMACAQTGSGKTAAFLLPIMSRLTDESDLNTAGEGGCYP 474 Query: 265 EELAARRKVLLENNKLLEEQR-LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L + E ++ Q + G G Sbjct: 475 RCIILTPTRELADQIYNEGRKFAYQTMMEIKPV--YGGLAVGYNKSQIERGATIVVGTVG 532 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + + + + + + + M + +E Sbjct: 533 RIKHFCEEGTIKLDKCRYFVLDEADRMID----------------AMGFGDDIRTIVGYE 576 Query: 384 ----ALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQ 431 QT+ SAT + E + + D + + E + + Sbjct: 577 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 636 Query: 432 VDDLLSEIRQRAAIN----------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 D LL + ++ +V + +A+ L L +H + Sbjct: 637 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 696 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E +R R G VL+ + GLD+ V V D + I IGR Sbjct: 697 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP-----DNIDDYIHRIGR 751 Query: 542 AAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 R +G+A + ++ + + + E+ Sbjct: 752 TGRVGNSGRATSFIEEG-CPLVPDLLKVLADAEQNVP 787 >UniRef50_D0MT79 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MT79_PHYIN Length = 564 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 50/421 (11%), Positives = 108/421 (25%), Gaps = 38/421 (9%) Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + + ++ + + + + F+I Sbjct: 148 PVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWP-ILASGRDIIGIAETGSGKTLAFSIPG 206 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 H E + L L ++ + G Sbjct: 207 LIHIAAQPEVSHK--HPGPRMLVVAPTRELAMQSSAVISEAGKKCG-LKSICIYGGVPKH 263 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + + P L D + + + V + + Sbjct: 264 TQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADR---------------- 307 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------- 417 L + Q SAT + + + D V G Sbjct: 308 -MLDEGFEKDIRAIIGSTHPERQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASH 366 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + I+EV + + +++ A+ R+L+ L K+ A+ + L + G + Sbjct: 367 NVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLFVLYKKEADRVERMLHQRGWNCIAI 426 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H D + +R E + + GE +L+ ++ GLD+P V V + + Sbjct: 427 HGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVMNYSFPL-----TIEDYV 481 Query: 537 QTI-GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 I G A + A + R + + ++ + KK Sbjct: 482 HRIGRTGRGGKKGTAHTFFTANDKPRAGELVNLLRESNQ--EVPKDLTKFGTHVKKKEHK 539 Query: 596 I 596 + Sbjct: 540 L 540 >UniRef50_B5ESS9 Dead/deah box heliCase domain/helicase conserved domain/dbpa rna binding domain protein n=9 Tax=Bacteria RepID=B5ESS9_VIBFM Length = 462 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 46/402 (11%), Positives = 108/402 (26%), Gaps = 18/402 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++L ++ L + + + + Sbjct: 9 LDLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQ----GKTGSGKTAAFGLGLLA 64 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L + + + T+ + + + ++ + G P L Sbjct: 65 NLNVKRFRVQSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGA 124 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V + D L E L + + + Q + Sbjct: 125 HIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLF 184 Query: 393 SATPGNYELEKSGGDVVDQV------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 SAT + + D + ++ + L + Sbjct: 185 SATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILL-LKHQP 243 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E ++ TKR+ +++ + L + V LH D++ +R + + +LV ++ Sbjct: 244 ESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ + V + R + IGR R G A+ ++ I Sbjct: 304 ARGLDIESLDAVVNFE-----LSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQI 358 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 E + + + ++V + G K + Sbjct: 359 EEYMNIDIRDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLR 400 >UniRef50_Q9VXW2 CG6227 n=20 Tax=Endopterygota RepID=Q9VXW2_DROME Length = 1224 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 58/453 (12%), Positives = 120/453 (26%), Gaps = 28/453 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLEN 277 E+E L + I + + + + +E+ Sbjct: 521 EMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMED 580 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + +++ ++ S + G L ++V Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSK--SLGLRPVCVYGGTGISEQIAELKRGAEIIV 638 Query: 338 DESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 I + G + R L E + + ++ + QT+ S Sbjct: 639 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFS 698 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT + + + G ++ + + + LL + Sbjct: 699 ATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAG 758 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++V + A+ L L + LH ID +R I D + G+ +L+ ++ Sbjct: 759 S-IIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVA 817 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 GLD+ ++ LV D + GR R G A + A I Sbjct: 818 ARGLDVKDLILVVNYDVPNH-----YEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDI 872 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 Q L + + T GK E + Sbjct: 873 IRAMDLSGTLIP------AELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAA 926 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 S K + + + + + ++ QI Sbjct: 927 KESKKLQKAALGLADSDDEEDIEQDIDQQIEQI 959 >UniRef50_Q96GQ7 Probable ATP-dependent RNA helicase DDX27 n=28 Tax=cellular organisms RepID=DDX27_HUMAN Length = 796 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 58/461 (12%), Positives = 137/461 (29%), Gaps = 43/461 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + F + + + + L Sbjct: 240 QPTPIQKACIPVGLLG-KDICACAATGTGKTAAFALPVLERLIYKPRQ-----APVTRVL 293 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L ++L Q + G + + + P L D Sbjct: 294 VLVPTRELGIQVHSVTRQLAQFC-NITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 352 Query: 328 YLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +L + + + + M + + + + Sbjct: 353 HLHNCPSFHLSSIEVLILDEADRMLDE-----------------YFEEQMKEIIRMCSHH 395 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + + + V I +RP + + Sbjct: 396 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 455 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + V++ T TK+ A + L G +V LH ++ +R+E +R + + D Sbjct: 456 ALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQID 515 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +LV ++ GLD+ V V + + + +GR AR G+++ + Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPN-----TIKHYVHRVGRTARAGRAGRSVSLVGED 570 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 M K I + + K + ++ + K+ + + + +A+ + + Sbjct: 571 ERKMLKEIVKAAKAPVKARILPQDVIL---KFRDKIEKMEKDVYAVLQLEAEEKEMQQSE 627 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + + K + + E E Q + + E+ A+ Sbjct: 628 AQINTAKR-LLEKGKEAVVQEPERSWFQTKEERKKEKIAKA 667 >UniRef50_A0LLL9 DEAD/DEAH box helicase domain protein n=2 Tax=Deltaproteobacteria RepID=A0LLL9_SYNFM Length = 533 Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats. Identities = 55/375 (14%), Positives = 107/375 (28%), Gaps = 38/375 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ L + L F I T ++ + L Sbjct: 140 TPIQAALLPHTLNGLDAAG-RAQTGTGKTAVFIITMLTQFLRNP-APEGRRKGTPRALVL 197 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF-LSGRGPGEPPPTLFDY 328 L E L++ T + G + P L D+ Sbjct: 198 APTRELALQIEKETHLLSRHTP-FKSVAIFGGMDYEKQKRRLTGEVIDIVVATPGRLLDF 256 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-- 386 L + + I + M L + + Sbjct: 257 KRQGDLHLSKVEILVIDEADRM-----------------LDMGFIPDVQRIIHYTPPKAQ 299 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V ++ + + + + L + I Sbjct: 300 RQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNMI 359 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + +RV+V T + A LTE L +G L ++D +R++ + + R G+ V Sbjct: 360 TR--QNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRV 417 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ GL + VS V + + IGR R +G ++ + + Sbjct: 418 LVATDVAARGLHVEAVSHVFNYNMPM-----DPEDYVHRIGRTGRAGTSGISVSFASEDD 472 Query: 559 PSMAKAIGETERRRE 573 + A+ + Sbjct: 473 SFLIPALEKYLGHEI 487 >UniRef50_Q88NB7 ATP-dependent RNA helicase rhlB n=50 Tax=Gammaproteobacteria RepID=RHLB_PSEPK Length = 398 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 99/390 (25%), Gaps = 32/390 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ ++ + F I + + M L Sbjct: 33 TPIQAQVLGYTLRGQDAIG-RAQTGTGKTAAFLISIISQLQQTPPPKERYM-GEPRALII 90 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + LT+ T ++ P L D+ Sbjct: 91 APTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFN 150 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA--P 387 + + + + + L + + Sbjct: 151 QRGEVHLDMVEVMVLDEADR-----------------MLDMGFIPQVRQIIRQTPPKSER 193 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAA 444 QT+ SAT + + + + + + +E A D + Sbjct: 194 QTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVT 253 Query: 445 INE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N+ RV+V K + E L G L D+ +R+ + R G VLV Sbjct: 254 QNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVA 313 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ G+ + +S V + IGR R +G +I + + Sbjct: 314 TDVAGRGIHIDGISHVIN-----FTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQ 368 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNK 591 AI R+ K + +E + Sbjct: 369 LPAIEALLGRKIKCEMPPDELLKPVPRKHH 398 >UniRef50_B2SHR4 ATP-dependent RNA helicase n=17 Tax=Gammaproteobacteria RepID=B2SHR4_XANOP Length = 458 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 63/453 (13%), Positives = 132/453 (29%), Gaps = 24/453 (5%) Query: 227 FDPLTGQIVSTIPRFTIYPKTH---YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 D L +++ + ++ P + L+ + Sbjct: 17 IDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGK----TAAFGLGLLQKLDPALTRAQ 72 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHV 342 + T+ + + + + L G P L D +VV Sbjct: 73 ALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQLASLEAHDPHVVVGTPGR 132 Query: 343 TIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 R L E L + + Q++ SAT + Sbjct: 133 IQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRCDKHRQSLLFSATFPDIIR 192 Query: 402 EKSGGDVVDQVVRPT------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + D + +D + + + + E +V T Sbjct: 193 TLAREILKDPIEITVEGADNAPEIDQQFFEVDPTYRQKAVAGLLLRF--TPESSVVFCNT 250 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 ++ +++ L+E G LH D++ +R E++ +VLV ++ GLD+ ++ Sbjct: 251 RKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDL 310 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK 574 S V + + IGR AR G A+ + A+A+ + + K Sbjct: 311 SAVVNYELPT-----DTETYRHRIGRTARAGKHGLALSLVAPRETARAQALEAEQGQPLK 365 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + Q + + G K +A G E + A+ Sbjct: 366 WSRAPLATARPAQLPQAAMTTLRIDGGKTDKLRA-GDILGALTGEAGLSGAAIGKIAIYP 424 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + Q A+ L A +I+ + ++ + Sbjct: 425 TRSYVAIARAQVAKALAHLHAGKIKGRRFRVSK 457 >UniRef50_B6KQ71 ATP-dependent RNA helicase, putative n=6 Tax=Eukaryota RepID=B6KQ71_TOXGO Length = 1544 Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats. Identities = 65/465 (13%), Positives = 135/465 (29%), Gaps = 46/465 (9%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++++ + + + + H ++ +++ + Sbjct: 994 TEPFPIQMQAIPC-LMCGRDVIAVAETGSGKTLAYGLPLIRHVLSVKQQDFRDGA---IA 1049 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L N E R + + + G G + + P L Sbjct: 1050 LVIAPTRELCNQIFKEINRCCKLVDLNA-VACYGGAGIGSQLGAIKRGVEVIVGTPGRLI 1108 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D L +G G + R L E + + Sbjct: 1109 DILTMNG--------------GRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPD 1154 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 QT SAT + + + V G + +EV + LL + Sbjct: 1155 RQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLL 1214 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + V++ + A++L L ++G + LH D +R I++ + G + Sbjct: 1215 GEWQEHGS-VIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRTL 1273 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ ++ GLD LV + + IGR R G A + K Sbjct: 1274 LIATSVAARGLDCKHCVLVINMTCPNH-----IEDYVHRIGRTGRAGRIGVAYTFLTKED 1328 Query: 559 PSMAKAIGETERRREKQQK--YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 A + + + + ++ Q N + + G + S Sbjct: 1329 ADKADDLEKALTQSGQAVPQALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFSASEK 1388 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + QQ EL + + A++ EF +A + + Sbjct: 1389 SRQ---------QRERQQAKKELG--LEKDAEDEEFLDADLLAPE 1422 >UniRef50_C1I992 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I992_9CLOT Length = 370 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 58/370 (15%), Positives = 116/370 (31%), Gaps = 23/370 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 V+ L T V I K + + ++++N Sbjct: 12 LVDELKKNGITTPTKVQVNVIPEIINKNDVI----GKSKTGSGKTLAFLLPILQIIDSNS 67 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 E + T+ + E + G+ + L L++ Sbjct: 68 KSTEVLILSPTRELAIQITEEANKFN--INDIGILAAYGGKDVGSQLKKLNKGINLIIAT 125 Query: 340 SHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + + E L N K + QT+ SAT + Sbjct: 126 PGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQTLCFSATIDS 185 Query: 399 YELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + + + + + +VD L+ + + Sbjct: 186 KVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVKIL--EEDNPFMSI 243 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TKR A++L L G + +HSD+ +R +I++ R E L+ ++ G+ Sbjct: 244 IFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLIATDVASRGI 303 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ V+ + DA S S I IGR AR +G L D ++ + I Sbjct: 304 DVTGVTHIYNYDAP-----ESVESYIHRIGRTARAGDSGYTCLITDPKNYTILEEIENYL 358 Query: 570 RRREKQQKYN 579 + +++ N Sbjct: 359 QYTIPEREVN 368 >UniRef50_Q5KNF8 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Agaricomycotina RepID=PRP28_CRYNE Length = 738 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 56/410 (13%), Positives = 110/410 (26%), Gaps = 19/410 (4%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F I + Sbjct: 335 YKEPSPIQRQAIP-IGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPY 393 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E +R + + G + ++ P L Sbjct: 394 ALIMAPTRELAQQIETETRRFALPLGY-KCVSIVGGRSVEEQQFALRDGAEIIIATPGRL 452 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR----PLKFEE 381 D + L++ +V + + M + + E Sbjct: 453 KDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPDDSVALQPTKEG 512 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDD 434 T SAT + ++ G ++ +E + Sbjct: 513 EWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRVEFVHGDEKKKA 572 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L EI + + ++V K+ A+ + +Y+++ G LHS +R ++ LR Sbjct: 573 RLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQEQREAALQALRD 632 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 GE VLV +L G+D+P+VSLV + + IGR R G AI + Sbjct: 633 GEISVLVATDLAGRGIDVPDVSLVINWQM-----SDTIEKYVHRIGRTGRAGKTGVAITF 687 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + + + + E G Sbjct: 688 LTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTREMKRKRGDEE 737 >UniRef50_C8PQM8 DEAD/DEAH box helicase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PQM8_9SPIO Length = 646 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 109/399 (27%), Gaps = 16/399 (4%) Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI---VQAMEEIKEEL 267 + F + S+ + + + + + + + Sbjct: 14 PIMDISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAY 73 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + + T+ + E ++ G Sbjct: 74 GLPLVQELREPREKPRALVLVPTRELALQVASEIESFK-EGTHPRITTVYGGASIVEQLR 132 Query: 328 YLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +V I + D L E L + Sbjct: 133 NLKRGCEIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPD 192 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA 443 + + SAT L+ + + + + + P+ E + +D + + Sbjct: 193 SRVLMFSATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLI 252 Query: 444 A--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 N LV TK A+ + + L+E LH DI +R +I+ R G+ +LV Sbjct: 253 DTAENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILV 312 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ ++ V +G + IGR R G A+ + Sbjct: 313 ATDVAARGIDIEGITHVVNYSIPYDGP-----TYTHRIGRTGRAGAKGTAVSFIRPNERR 367 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + R + K + Q ++ D+ Sbjct: 368 RIDYLRRHARGELLEGKIPSIEKVLAQKQDRLFSDLRRQ 406 >UniRef50_Q4TVV3 Probable ATP-dependent RNA helicase DDX46 n=18 Tax=Eumetazoa RepID=DDX46_DANRE Length = 1018 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 53/440 (12%), Positives = 117/440 (26%), Gaps = 29/440 (6%) Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST---IPRFTIY 244 ++ + ++ + + + + + L I I Sbjct: 313 MSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIP 372 Query: 245 PK---THYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + + + + + + +T + L++ E Sbjct: 373 AIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKE 432 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG----GMYRGDR 355 S + + + G L ++V I +G + R Sbjct: 433 CKKFSK--SLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRR 490 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 + E + + ++ + QT+ SAT + + V Sbjct: 491 VTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQ 550 Query: 416 TG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 G ++ + V + LL + V++ + A+ L + L + Sbjct: 551 VGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGS-VIIFVDKQEHADGLLKDLMK 609 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 LH ID +R II D + G +LV ++ GLD+ ++ LV Sbjct: 610 ASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNH-- 667 Query: 529 LRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK-YNEEHGITP 586 + GR R G A + + + I + E+ Sbjct: 668 ---YEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQLWTNF 724 Query: 587 QGLNKKVVDILALGQNIAKT 606 + K I+ + Sbjct: 725 KEQQKAEGKIIKSSSGFSGK 744 >UniRef50_Q8GY84 DEAD-box ATP-dependent RNA helicase 10 n=26 Tax=Eukaryota RepID=RH10_ARATH Length = 456 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 55/479 (11%), Positives = 124/479 (25%), Gaps = 54/479 (11%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 ++ +++ AEL R + R + +++ + +E Sbjct: 3 EENEVVKTFAELG-VREELV----KACERLGWKNPSKIQAEALPFALE--------GKDV 49 Query: 228 DPLTGQIVSTIPRFTIYPKTHYV--TPRERIVQAMEEIKEELAARRKVLLENNKLL-EEQ 284 L F I + + A E + E+ Sbjct: 50 IGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQF 109 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVT 343 + G + + P L+D++ G + ++ Sbjct: 110 EALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLV 169 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + D + + E L +T SAT + Sbjct: 170 LDEADRLLNED-----------------FEKSLNQILEEIPLERKTFLFSATMTKKVRKL 212 Query: 404 SGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + + V L + L+ + + ++ T T Sbjct: 213 QRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES--TSMIFTRTC 270 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 L L G R + + +R+ + + GE ++LV ++ GLD+P V Sbjct: 271 DGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVD 330 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 +V D + + I +GR AR G I ++ I + ++ + Sbjct: 331 VVINYDIPT-----NSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPE 385 Query: 576 QK-----YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + +++ G + + + D + Sbjct: 386 YPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERGG 444 >UniRef50_D2LUR2 DEAD/DEAH box helicase domain protein n=3 Tax=Bacillus RepID=D2LUR2_BACS4 Length = 482 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 53/398 (13%), Positives = 107/398 (26%), Gaps = 20/398 (5%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + + V + A + ++ Sbjct: 18 AIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGK----TAAFAIPICEQVTWDENSP 73 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + T+ + E G + L +P L +VV Sbjct: 74 QALVLTPTRELAAQVKEEFMNIGRLKRIKAL-AIYGKQPFDRQKLELKQKTHVVVGTPGR 132 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYE 400 + + + ++ + + E ++ + A T SAT Sbjct: 133 LLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIYSATISEAV 192 Query: 401 LEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLT 455 S +++ + I V + S I+ + +V T Sbjct: 193 EHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPDSCIVFCET 252 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L + L + +H + ER ++ + + G+F LV NL G+D+ + Sbjct: 253 QVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAARGIDIESI 312 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 SLV D + + GR R GKAI + + + I + Sbjct: 313 SLVINYDMPL-----DKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIEDYIGYAIP 367 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 E + L D + + KA Sbjct: 368 PMNIPSE--REVERLKPAFEDKMRNRPLTKRNKASQLN 403 >UniRef50_A4EAF2 Putative uncharacterized protein n=4 Tax=Collinsella RepID=A4EAF2_9ACTN Length = 749 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 52/391 (13%), Positives = 101/391 (25%), Gaps = 50/391 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY--VTPRERIVQAME-- 261 + ++ +E F + + + P + + + Sbjct: 66 YTAPTPVQAGSIPVVLEG-RDLLAAAQTGTGKTAAFLLPTMNNLEHIAPPKPVRERGGRN 124 Query: 262 ------------EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 L L ++ T + G + Sbjct: 125 RRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGHVAVTV-VGGVSYKPQTA 183 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P L D + + + + + + L Sbjct: 184 ALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADR-----------------MLD 226 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPI 422 + QT+ SAT + + V D +D Sbjct: 227 MGFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQF 286 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + + + + L +++ ER +V TK A+ LE G + +H + Sbjct: 287 VFPVSIEAKNNLLPEFLKKE--GPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQ 344 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R + R G DVLV ++L G+D+ +V V D I IGR Sbjct: 345 AQRERALSAFRDGTVDVLVATDVLARGIDISDVRYVVNFDVP-----AEPTDYIHRIGRT 399 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRR 572 R G AI + + I + + Sbjct: 400 GRAGELGWAITFVTEQDVDEFYEIEKLMDKT 430 >UniRef50_Q15T34 DEAD/DEAH box helicase-like n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15T34_PSEA6 Length = 458 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 51/370 (13%), Positives = 105/370 (28%), Gaps = 17/370 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L DE + ++ + + + + + L R Sbjct: 6 LGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQRLAA 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ + + R + G L Sbjct: 66 KQSTKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAV-YGGVRIEPQIAQLQEGV 124 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ + + E L + + + + QT+ Sbjct: 125 DVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLF 184 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-------PVATQVDDLLSEIRQRAAI 445 SAT + + ++ +++ A + L+ I+Q Sbjct: 185 SATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQQH--R 242 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + LV TKR A+ L LE+ G +H++ R + + + GE VLV ++ Sbjct: 243 WSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVATDI 302 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ ++ V D + IGR R N G AI S ++ Sbjct: 303 AARGIDVSQLPCVVNYDLPYV-----PEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQS 357 Query: 565 IGETERRREK 574 + + K Sbjct: 358 LERYLDQHLK 367 >UniRef50_B1VFC1 Putative ATP-dependent RNA helicase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VFC1_CORU7 Length = 497 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 62/376 (16%), Positives = 110/376 (29%), Gaps = 22/376 (5%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR---KVLL 275 E E L T + + + + L R + Sbjct: 28 EIAEALEQAGMPTAFAIQELTLPIALRGDDLIGQARTGMGKTLGFGVPLLDRIFDDAGIT 87 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSG-----IENYSRFLSGRGPGEPPPTLFDYLP 330 E + + + + L++ +L + ++ ++ G L Sbjct: 88 ELDGSVRGLVVVPTRELCLQVAEDLTLATANLVIPANDHRVTVTPIYGGVGFNQQIRALS 147 Query: 331 ADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +VV + L E L + + + QT Sbjct: 148 RGTDVVVGTPGRLLDLHRRGELELSGVEVLVLDEADEMLDQGFLDDIRQIMSLTSPDRQT 207 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQVDDLLSEIRQRAA 444 + SAT L S + V+ + + D +S + + Sbjct: 208 MLFSATMPGPVLSLSREFMKQPVMIQADSTAAADTHERVTQIAFQSHKLDRMSTLSRILQ 267 Query: 445 INER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 R +V T TKR A + E L G RV +H D+ +R + ++ R G DV+V Sbjct: 268 SPGRGRTIVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQLFRDGAVDVMVA 327 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+D+ +V+ V ER+ + IGR AR G AI Sbjct: 328 TDVAARGIDVTDVTHVVNYQVP-----EDERTYVHRIGRTARAGKDGTAITLVGWDEVPR 382 Query: 562 AKAIGETERRREKQQK 577 I E + Sbjct: 383 WDHISEALGLGLQDPP 398 >UniRef50_A7EG81 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EG81_SCLS1 Length = 638 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 61/420 (14%), Positives = 115/420 (27%), Gaps = 47/420 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA------ 259 ++ + V++ F I + + +++ Sbjct: 175 YHVPTPIQ-QYCLPAVKKGHDVVACAQTGSGKTAAFLIPILSKLMGKAKKLAAPRPNPAT 233 Query: 260 --------MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 ++ + L E +R RT + G + Sbjct: 234 YVPSQDNYIKAEPLVVIVCPSRELATQIFDEARRFCYRT-MLRPCVVYGGGPLAEQLGQL 292 Query: 312 FLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D + L + ++ I + M + + G Sbjct: 293 AKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSSWEEELRQIMSGGDQEE 352 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG-------LLDPI 422 N + SAT + + + D V G + Sbjct: 353 GNINY--------------MMFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHSNIKQD 398 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 I A++ L + R ++ TKR A+++ +YL + +HSD Sbjct: 399 IIYVEAASKRKALYDLLLSI--PPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQ 456 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER + IR R G +L+ + GLD+ + V D IGR Sbjct: 457 REREDSIRAFRNGRMPILIATGVSARGLDVHNIMHVINFDLPS-QAHGGIEEYTHRIGRT 515 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE----HGITPQGLNKKVVDIL 597 R G A + + +A+A+ +T + E G T G + + Sbjct: 516 GRIGNRGLASSFYNDRNEDIAEALVKTLLETRQAVPDFLESYLPEGFTMDGQTGDLATLK 575 >UniRef50_A8H2J8 DEAD/DEAH box helicase domain protein n=34 Tax=Gammaproteobacteria RepID=A8H2J8_SHEPA Length = 442 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 52/382 (13%), Positives = 114/382 (29%), Gaps = 30/382 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + A++ + ++ + F + + +A Sbjct: 43 YTKPTAIQSHIIPAVLDGKDVLG-GAKTGSGKTAAFALPIIQKL--AKASPRKAGGNFVS 99 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQ-FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L R +Q + + G + ++ S P Sbjct: 100 CLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQMQSLRGGADIVVATPGR 159 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + ++ L + + + + + + M + Sbjct: 160 LIDLISSNALKLDNTTTLVLDEADRMLSL-----------------GFTEELNELLAKLP 202 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-GLLDPIIEVRPVATQVDDLLSEIRQRA 443 QT+ SAT E + + + V + + R + + + + Q Sbjct: 203 KTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQRVITVNRNRKTALLAQLI 262 Query: 444 --AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++VL+ K L + LE G HSD R ++ + + GE VL+ Sbjct: 263 KDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISVLI 322 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ ++ +V + RS + IGR+ R G A+ Sbjct: 323 ATDIAARGIDIEKLPIVINFELP-----RSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQ 377 Query: 561 MAKAIGETERRREKQQKYNEEH 582 K I + + R ++++ Sbjct: 378 HFKLIEKKNKLRLEREQIPGFE 399 >UniRef50_C5SI45 DEAD/DEAH box helicase domain protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SI45_9CAUL Length = 605 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 51/377 (13%), Positives = 104/377 (27%), Gaps = 37/377 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + F + H + + + + Sbjct: 22 YHTPTPIQAQAIP-ILLNKHDLLGIAQTGTGKTAAFALPILHHIL-----SNRIIPAPRS 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMM-NELGYCSGIENYSRFLSGRGPGEPPPT 324 E + + L++ G G + + P Sbjct: 76 CRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQGGIDILVATPGR 135 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D++ + + H+ + + M + Sbjct: 136 LIDHIEQKTIDLKAVEHLVLDEADQML-----------------DMGFIKPIRQVASRLP 178 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSE 438 Q ++ SAT + + + E + LLSE Sbjct: 179 AQRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSE 238 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R L+ T TKR A+ + YL+ G +H D + +R ++ + G Sbjct: 239 LYADEKL-ARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVR 297 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 LV ++ G+D+ V+ V + + + IGR AR G +I Sbjct: 298 ALVATDIAARGIDVDNVTHVINYELPFV-----AEAYVHRIGRTARAGKEGHSITLVADD 352 Query: 558 TPSMAKAIGETERRREK 574 + K I R+R Sbjct: 353 ERKLLKDIERITRQRIP 369 >UniRef50_C1AE59 ATP-dependent RNA helicase RhlE n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AE59_GEMAT Length = 498 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 55/443 (12%), Positives = 109/443 (24%), Gaps = 48/443 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ E +E F + ++ Sbjct: 23 FARPTPIQGEAIPPALEG-RDVLACAMTGSGKTYAFLLPILHQLMSKPRGN-------TR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L L Q +T T + G Sbjct: 75 ALVLTPTRELAAQILESLQDVTTHTPL-------------------TGAAVFGGVGMGPQ 115 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + ++V + + D+ L E L K Sbjct: 116 EHAFRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLP 175 Query: 385 -LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLL 436 QT++ SAT + + V + + + L+ Sbjct: 176 NRKRQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLV 235 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +++ + LV T TK A L L G + +H + +R + + + G Sbjct: 236 ALLKR--GDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGS 293 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGD 555 + VLV ++ G+D+ + V D + I +GR AR G+A + Sbjct: 294 YQVLVATDIAARGIDVEALGHVVNFDVPV-----AAEDYIHRVGRTARAEATGEAFTFVS 348 Query: 556 KITPSMAKAIGETERRREKQQKYNEEH----GITPQGLNKKVVDILALGQNIAKTKAKGR 611 K I +R + + + + Sbjct: 349 PEEEGELKLIERAIKRALPRVTVPDFDYHAKPTQKLEVPIAERIAEIRKKKAEDRARAAA 408 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ 634 +R ++ S K + Sbjct: 409 KVARRTAAQESEAARKSAKDAKP 431 >UniRef50_B8C599 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C599_THAPS Length = 681 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 56/403 (13%), Positives = 108/403 (26%), Gaps = 34/403 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + + F + H + + + E L Sbjct: 82 NPFPVQAQCLPC-IMAGRDVIGIAKTGSGKTLAFVLPMLRHIL--DQPPLAPGETGPIGL 138 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + + T+ G + P L D Sbjct: 139 ILAPARELAYQIHVVCKGFTKHLG-LKSTAVYGGAGVAEQIGDLKRGTHILCATPGRLID 197 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L G + R L E +++ Sbjct: 198 ILTMQS--------------GKLISLQRVSMVCLDEADRAFDMGFESQISAILSAVRPDR 243 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + + G +D EV + LL + Sbjct: 244 QTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRLLQILG 303 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR--LGEFD 498 A ++V+V + A+ L E L G +H +D +R + D + + Sbjct: 304 DHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRVDSGVN 363 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ GLD+P V + + +GR R G A + + Sbjct: 364 VLVATSVAGRGLDVPSCGCVVNYASPNH-----LEDYVHRVGRTGRAGNRGVAFTFVNST 418 Query: 558 TPSMAKA-IGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + I + + ++E + +KV A Sbjct: 419 DEAKFAPSIVRALVEAGQSKNISQELNELSESYKEKVAKGEAR 461 >UniRef50_B0SU57 ATP-dependent RNA helicase, DEAD-box family (DeaD) n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SU57_LEPBP Length = 534 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 61/431 (14%), Positives = 122/431 (28%), Gaps = 30/431 (6%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E ++ ++ + + + + + R KV Sbjct: 24 PEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVEDGM 83 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + T+ +++ + G + G + + V Sbjct: 84 Q-----VLVLTPTRELALQVSDELFKLGKH-LGIKTTTIYGGSSYSKQITQVAKGAQVAV 137 Query: 338 DESHVTIPQIGGMYRGDRARKET-LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + G + L E L + QT+ SAT Sbjct: 138 ATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSATM 197 Query: 397 GNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + ++ + + A + ++ + + Sbjct: 198 PEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYE--NPFKA 255 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ T TK+ A+DL L G V LH D++ +R ++++ L G +LV ++ G Sbjct: 256 IIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARG 315 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+ ++SLV S IGR R GKA+ + T Sbjct: 316 LDVKDLSLVINYHLPF-----DSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGT 370 Query: 569 ERRREKQQKYN---EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E H + KKVVD A + K + + ++ + Sbjct: 371 SGTNLTIAALPTKKEVHLSREEDFLKKVVDTEIHADAEAVLE-----KLLKLEDKRSIAL 425 Query: 626 DMSPKALQQKI 636 + K L Sbjct: 426 KLLSKMLDNTK 436 >UniRef50_Q2BMZ1 ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMZ1_9GAMM Length = 417 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 110/377 (29%), Gaps = 18/377 (4%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F + L +P + + + E L + + Sbjct: 10 DFFTSTLSSLGYKEP---TAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSI 66 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN-YSRFLSGRGPGEPPPTLFDYLPADG 333 L + T+ +++ G L Sbjct: 67 PAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKGC 126 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + L E L + + QT+ Sbjct: 127 DIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLF 186 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAIN 446 SAT + E + + + V + + LL + + Sbjct: 187 SATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIK-QEKW 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +++L+ +KR A ++ L G + LH D+ ER+ + D G +L+ +L Sbjct: 246 QQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLA 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+P + V D R+ + GR AR G AI + D + + K I Sbjct: 306 ARGIDIPSLPCVLNYDLP-----RATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLI 360 Query: 566 GETERRREKQQKYNEEH 582 + R + +++ Sbjct: 361 EKRIRMKIPREQIPGFE 377 >UniRef50_A0CUL6 Chromosome undetermined scaffold_28, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0CUL6_PARTE Length = 604 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 59/413 (14%), Positives = 115/413 (27%), Gaps = 57/413 (13%) Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEV-ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 ++D+ ++ + + F + H + Sbjct: 140 CFPQMLMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPAIVHILAQ 199 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 L L + Q+ + +Q + G I+ Sbjct: 200 ARSHDPK------CLILAPTRELTLQIYDQFQKFSVGSQLYAACL-YGGQDRYIQKSQLR 252 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + P L D L + S + + + M L Sbjct: 253 KGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRM-----------------LDMGF 295 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL--------LDPII 423 + + K + QT+ SAT + + + V G + I+ Sbjct: 296 EPQIRKIVDQIRPQRQTMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNRMIKQIV 355 Query: 424 EVRPVATQVDDLLSEI----------------RQRAAINERVLVTTLTKRMAEDLTEYLE 467 V + I + ++++L+ TK+ + L + L+ Sbjct: 356 YVMKAIDKNQRYNQTIDGANIYTRSSISLLLYLLKDIAHKKILIFCSTKKGCDQLQKTLD 415 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G R LH D ER ++ R G L+ ++ GLD+ ++ +V D Sbjct: 416 REGIRCLALHGDKKQTERDYVMSHFRNGRSTALIATDVASRGLDIKDIEVVVNYDMP--- 472 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYG-DKITPSMAKAIGETERRREKQQKY 578 + + IGR R G++I + MAK + E R + Y Sbjct: 473 --KVIEDYVHRIGRTGRAGAIGQSISFFASDEDVRMAKDLVEILRESQNDIPY 523 >UniRef50_A3JG19 ATP-dependent RNA helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JG19_9ALTE Length = 463 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 103/393 (26%), Gaps = 31/393 (7%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ E + F I + + LA Sbjct: 66 TPIQAETLPWTL-ACQDLIGQAQTGTGKTAAFLITAIQTMLETPIEDSKRFASEPRVLAL 124 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + ++L T + + + + + P L D+L Sbjct: 125 APTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRDQLQNEVVDILVATPGRLIDFL 184 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE--ALAP 387 + + + + + + M L + Sbjct: 185 GSQDVFLDQIDILILDEADRM-----------------LDMGFIPDVKRIIRKCTPKEDR 227 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA 444 QT+ SAT L + +E D+ L + Sbjct: 228 QTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLVNYLK 287 Query: 445 INE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 E + LV + DL E L G V + +I +R++ + + G VLV Sbjct: 288 RPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQVLVA 347 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+ + V+ V + + + IGR R + G +I + + Sbjct: 348 TDVAGRGIHVNGVTHVFNYNLP-----DNAEDYVHRIGRTGRAGSTGVSISFAGEDDSFA 402 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 AI + ++ + +E + Sbjct: 403 LPAIEKYIGQKLANEVPDEALMVPMDNAPIARK 435 >UniRef50_B5JNP6 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNP6_9BACT Length = 436 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 62/483 (12%), Positives = 133/483 (27%), Gaps = 66/483 (13%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +LR L L Y + P ++ I + V + S Sbjct: 10 DFLLRSLETLGYE------------------EATPIQAAAIPV--------VLKGSDLLA 43 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F++ E+ + L L +R + Sbjct: 44 AAQTGSGKTAAFSLPIIERLAGMEEQ-----KAKPRFLVLVPTRELAVQVGAAIERYAEG 98 Query: 290 T-QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + ++ G + + + P L D +++ + + + + Sbjct: 99 APRKARVLVAFGGVGYDAQMKAAYAGVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEAD 158 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + E Q + SAT + + + Sbjct: 159 RLLALG-----------------FAEELNTILEMLPEGRQNLLFSATFPQNVVSLANALL 201 Query: 409 VDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D V + ++ L + ERVLV +KR AE+ Sbjct: 202 KDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLL--ETEGWERVLVFVGSKRRAEN 259 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +T L++HG + LH ++ +R + + + VL+ ++ G+D+ + V Sbjct: 260 VTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDIAGLPCVVNY 319 Query: 522 DADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D RS + IGR R +G A+ + + + I + R ++++ Sbjct: 320 DLP-----RSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLIEKKNGLRLERERLEG 374 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + A + +K K+ + + + + Sbjct: 375 FVPENWN--PEDPAKGKAPVKGKRPSKKDKLRKAAAGKARGSGGNKDVSSPWARALRKAT 432 Query: 641 GLM 643 G Sbjct: 433 GEE 435 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 100/682 (14%), Positives = 193/682 (28%), Gaps = 81/682 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF ++ R ++ G + G+T S + A +P Sbjct: 1 MILPF--VRELFADVEKSPEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPL 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ P+ A +L P ++ + +P+ D ++ S + I+ Sbjct: 59 IVVVPSNRAAEEL-------LPIVQAYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQ 111 Query: 121 QMRLSATKAMLERRDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R +A ++ V+A V+ + Y + + G ID + L Sbjct: 112 EARAAALWKIVSGTARFVIAPFVATAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTS 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ D G + +RG ++DI+P ES+ +R+ELF +EVE + FD T + Sbjct: 172 GYSTVDVVEMPGEYALRGGILDIYPPESE-HPVRIELFGDEVESIRKFDTETQRSAGATD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + ++ + LE E + + Sbjct: 231 EVVLLPLSDTPVREDILGSIHAKLSGRRLDADEETLEAIARAEGVTVFPGWE-------- 282 Query: 300 LGYCSGIENYSRFLSGRGPGEPPP-TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G LFD LP + + A Sbjct: 283 ----------------YYAGATANQRLFDLLPNAAV--------LRDDPVKIESDFEAWW 318 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 E + + R RP + Q I + PG + Sbjct: 319 ERVQQSHERSGVGHLVRPEDLLDSPDTWQQRIA--SLPGADVEQLGMYS---------ES 367 Query: 419 LDPIIEVRPVATQVD----DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + I ++ ++ E++ RVL E L + E+ R Sbjct: 368 GEQIAIQSQSTSKFHGSVPAMVEEVKALLTDGRRVLFAAANTGEVERLADIFSEYMVPFR 427 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINL----LREGLDMPEVSLVAILDADKEGFLR 530 T E + + + L + + EG+ MPE V D Sbjct: 428 V--GSRSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESE 485 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 A + ++ + +Y I Sbjct: 486 VAS--------AQQPKRSRSKVSAFLSDFRDLTINDYVVHVEHGIGQYQGLKEIAQGDGE 537 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + A+G P+ D + S + ++ ++ L + Sbjct: 538 PAE--------FMILEYAEGARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKAR 589 Query: 651 EFEEAAQIRDQLHQLRELFIAA 672 + + D+L +L A Sbjct: 590 VKKAMKDMADELLKLYAARKTA 611 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 61/459 (13%), Positives = 135/459 (29%), Gaps = 38/459 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD+ E D + P + + ++ A Sbjct: 626 FDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKTEVSMRAAFKAVSDNKQV 685 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + + +E SRF + + + + + + + Sbjct: 686 AVLAPTTVLAFQHFETFKRRFSAF--PVKVEMISRFRTA----KQQKEIVERVNNGQVDI 739 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + E R + + + +SATP Sbjct: 740 LIGTHRVLSKDIHFPDLGLV---VIDE-----EQRFGVRHKERLKQLRKEVDVLTMSATP 791 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S + D V T D + VA + L+ I Q ++ Sbjct: 792 IPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGGQIYFVHNR 851 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++++ + E + + L H + + +I+ + D+LV ++ GLD+P Sbjct: 852 VESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTIIENGLDIP 911 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + AD+ G L Q GR R+ + + E RRR Sbjct: 912 LCNTMIVNRADRHGLSE----LYQLRGRVGRSNRRAYAYLLVPPD----RELTELARRRL 963 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + G G +D+ G + + + V ++ L+ Sbjct: 964 AALKEFSDLG---AGFKIAALDLELRGAGNLLGGEQSG-------QIEAVGFELYTTMLE 1013 Query: 634 QKIHELEGLMMQHAQNLEF---EEAAQIRDQLHQLRELF 669 + + E++G + + + + + + + Sbjct: 1014 RTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKEENQRL 1052 >UniRef50_Q7UNV7 ATP-dependent RNA helicase n=3 Tax=Planctomycetaceae RepID=Q7UNV7_RHOBA Length = 452 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 55/390 (14%), Positives = 117/390 (30%), Gaps = 26/390 (6%) Query: 209 DIALRVELFDEE----VERLSLFDPLTGQIVSTIPRFTIYPKT--HYVTPRERIVQAMEE 262 + ++ FDE + R ++ D + + Sbjct: 38 ETPPEMDSFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAA 97 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + + LE+ + + + + ++ E + + G+ Sbjct: 98 FSIPILEQLD-SLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLS--GGKNM 154 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L LVV + R + L E L + + Sbjct: 155 NRQLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMR 214 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDD 434 QT+ +SAT + + + VV ++ +V Sbjct: 215 KCPRNRQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRL 274 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE-EHGERVRYLHSDIDTVERMEIIRDLR 493 L S +++ E+ ++ TKR + L L E+G +H D+ ER +++ LR Sbjct: 275 LESLLKREK--PEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLR 332 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G LV +++ G+D+ +S + D + + +GR R G A Sbjct: 333 DGNLKFLVATDVVGRGIDISTISHIVNFDVP-----QDCDDYVHRVGRTGRMGRDGVAYT 387 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + +I + + + K + Sbjct: 388 FVVPGEGDILTSIEQRINKLLIRDKMDGFE 417 >UniRef50_A7HDE9 DEAD/DEAH box helicase domain protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HDE9_ANADF Length = 680 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 45/426 (10%), Positives = 109/426 (25%), Gaps = 18/426 (4%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + A + + + + T+ + + + Sbjct: 63 RSKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKH-RDLSVVA 121 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDN 374 G L A ++V I + D L E L Sbjct: 122 VYGGASMGEQLQKLEAGAEIIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFE 181 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIE-VR 426 + + Q + SAT + + D + ++ Sbjct: 182 EVTRILDNLPKDCQQLLFSATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAV 241 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + +LL I E +V T+ + L +G L+ D+ ER Sbjct: 242 DAYPKPRNLLYMI--EMEEPETAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERE 299 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 ++ ++ GE +V ++ G+D+ +++ V + +GR R Sbjct: 300 RVMAKVKRGEVRFMVATDIAARGIDISDLTHVINYSLP-----EDPAVFLHRVGRTGRIG 354 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G ++ A+ + +++K ++ VV++ Sbjct: 355 KKGTSLSIVSGAEIHTLTALQKKFGIAFEEKKLPTPDEARRLWTDRHVVELKDAMSASIF 414 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + K + A++ E + + ++ + Sbjct: 415 EAFIPLSQELRNRPDGEYLVAFALKYFFTHHRMERAQDREKAEHKREEHERREKGEVKRE 474 Query: 666 RELFIA 671 Sbjct: 475 GGRRET 480 >UniRef50_A2DES1 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DES1_TRIVA Length = 640 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 123/414 (29%), Gaps = 39/414 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +++ + + F I H + + Sbjct: 123 QPTSIQCQAIPC-ILSGRDIIGCAVTGSGKTLAFIIPCLLHVLAQPPTGQ----YEAAAV 177 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L +E Q++ G + + P D Sbjct: 178 ILSPTRELAYQTHIECQKIFSLMDK-KSACLVGGNDIENQLRAIKNGSNVIIATPGRFID 236 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + + S++ I + M+ + + ++ E Sbjct: 237 LLSSSAFNIKKVSYLVIDEADRMF-----------------DLGFEPQVIRIAERMRKDR 279 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + + + + G ++ I V + + LL + Sbjct: 280 QTLMFSATFPHTVERIARKLLQNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILG 339 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + LV T T+ AEDL L + G V LH +D+ +R I+ D R G F VL Sbjct: 340 DYTTQG-QALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVL 398 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ G+D+ + V DA E + +GR R G A + Sbjct: 399 VLTSVGARGIDIASIICVINYDAP-----DHEADYVHRVGRTGRAGKKGYAFTFVTDKDK 453 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + A I ++ + ++ QG+ ++ G K + + Sbjct: 454 TAAAGIKNAMKKSGCEI--PKDLEDLCQGVKAPGLNGFWRGSGFKFDKEEAKSL 505 >UniRef50_Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 n=74 Tax=Eukaryota RepID=DDX23_HUMAN Length = 820 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 124/382 (32%), Gaps = 27/382 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + ++ + F I ++T +I + E + Sbjct: 411 YKEPTPIQRQAIPIGLQN-RDIIGVAETGSGKTAAFLIPLL-VWITTLPKIDRIEESDQG 468 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A E + +EE+ + + G + + + P Sbjct: 469 PYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGR 528 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA---------LDNR 375 L D L L++ ++V + + M + + + + Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKM 588 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPV 428 FE + QT+ +AT + + V G ++ + + Sbjct: 589 LANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSE 648 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + LL+ + + +++ K+ + L + LE+ G LH +R Sbjct: 649 SEKRKKLLAIL--EQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFA 706 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + +L+ G D+LV ++ G+D+ +VS+V D ++ I IGR R Sbjct: 707 LSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDM-----AKNIEDYIHRIGRTGRAGKS 761 Query: 548 GKAILYGDKITPSMAKAIGETE 569 G AI + K ++ + + Sbjct: 762 GVAITFLTKEDSAVFYELKQAI 783 >UniRef50_Q9Y6V7 Probable ATP-dependent RNA helicase DDX49 n=43 Tax=Metazoa RepID=DDX49_HUMAN Length = 483 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 59/465 (12%), Positives = 130/465 (27%), Gaps = 43/465 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +++ +E F + I L Sbjct: 24 QPTPVQLGCIPAILEG-RDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFC--------L 74 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + + L + + + G + P L D Sbjct: 75 VLTPTRELAYQIAEQFRVLGKPLG-LKDCIIVGGMDMVAQALELSRKPHVVIATPGRLAD 133 Query: 328 YLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +L + + + + + + + Sbjct: 134 HLRSSNTFSIKKIRFLVMDEADRLLEQGCTD--------------FTVDLEAILAAVPAR 179 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + E G LD + P + L+ I Sbjct: 180 RQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLI 239 Query: 440 RQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + +++ T T + + L L + LHS + ER + + + Sbjct: 240 QRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIY 299 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +L+ ++ GLD+P V +V + + I +GR AR G+AI + Sbjct: 300 RILIATDVASRGLDIPTVQVVINHNTPGL-----PKIYIHRVGRTARAGRQGQAITLVTQ 354 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH---GITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + AI E +++ ++ E +T + ++ +I + + K + K Sbjct: 355 YDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRK 414 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + D L + + + + L+ ++A + Sbjct: 415 QLILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRA 459 >UniRef50_UPI0001B1BBE4 Vasa4 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001B1BBE4 Length = 547 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 106/401 (26%), Gaps = 34/401 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM-EEIK 264 ++ + + + + + +V+ Sbjct: 151 YVKPTPIQKYSIP-IILSGKDLMATAQTGSGKTVAYVLPIIQKLLMDPQILVKDRNHSEP 209 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + + L + +L + T + G + P Sbjct: 210 QVVIMAPTRELAVQIKMVVLKLARGTG-ISSFVCYGGTLVSHQKNQILKGCHILVATPGR 268 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +++ + + ++ M D + F +PS + Sbjct: 269 LNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHFSMPSVM------------ 316 Query: 385 LAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QTI +SAT + + + + + G + + + D L Sbjct: 317 -DRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNKRDILT 375 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S +++ + +V K A+ L YL E +H D +R + D R + Sbjct: 376 SILKK---DSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRTRK 432 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +VLV + GLD+ V+ V D +Q IGR R G A D Sbjct: 433 MNVLVATTVAARGLDIKCVNHVLNYDMPLV-----IEEYVQRIGRTGRLGNKGIATSLFD 487 Query: 556 KITPSMAKA-IGETERRREKQQKYNEEHGITPQGLNKKVVD 595 + I ++ N Sbjct: 488 PDEDYLLVDPIISILASANQEIPNWLLKLGREARYNDDFDK 528 >UniRef50_D0JAM0 ATP-dependent RNA helicase n=2 Tax=Blattabacterium RepID=D0JAM0_BLASB Length = 551 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 43/383 (11%), Positives = 102/383 (26%), Gaps = 37/383 (9%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ ++ + L F + I + Sbjct: 27 PTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLPIIQKVNFD--------LSIPQAFI 78 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + R ++ + G + S P + D Sbjct: 79 LCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDSQIKSLQNKTHIIIGTPGRIIDL 138 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + L + ++ + + M + Q Sbjct: 139 IKRKKLHLEKIKYLILDEADEMLN-----------------MGFKEELDYIVKMLPKNRQ 181 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQR-- 442 ++ SAT Y + + D V G + + + + ++ S +++ Sbjct: 182 SLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSALKRIVD 241 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++ TK+ +++ EYL + G L+ D+ +R ++ R LV Sbjct: 242 INPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVA 301 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ GLD+ ++ V + + I GR R +G ++ Sbjct: 302 TDVAARGLDVHNITHVINYNLP-----KESDIYIHRSGRTGRAGNSGISVCIIHSKETRN 356 Query: 562 AKAIGETERRREKQQKYNEEHGI 584 K + + ++ I Sbjct: 357 LKEFEKRIGKSFERVMVPNGKEI 379 >UniRef50_Q93382 Protein C46F11.4, partially confirmed by transcript evidence n=3 Tax=Caenorhabditis RepID=Q93382_CAEEL Length = 811 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 55/458 (12%), Positives = 117/458 (25%), Gaps = 40/458 (8%) Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILR--RLAELQYARNDQAFQRGTFRVRGEVIDI- 202 Y + + Y + + +D + L F +++ Sbjct: 222 YQKFNKNFYEEHE-DIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAI 280 Query: 203 -FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ + + + H + + Sbjct: 281 RKSEYEQPTPIQAMAIPSAL-SGRDVLGIAKTGSGKTAAYLWPAIVHIMDQPDL---KAG 336 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 E + L E ++ + + G N + Sbjct: 337 EGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEGAEMVVCT 396 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P + D + + + + + M+ + + + Sbjct: 397 PGRIIDLVKMGATNFLRTTFLVFDEADRMFD-----------------MGFEAQVKSISD 439 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLS 437 Q + SAT + +VD V G + I + V D L Sbjct: 440 HVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLH 499 Query: 438 EIRQRAAIN---ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + +VL+ K +ED+ + L+ + LH D+ ER E + R Sbjct: 500 WLIRNLVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK 559 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 + +LV ++ GLD+ E+ V D R + + IGR R G A Sbjct: 560 -KSQILVATDVAARGLDISEIRTVINFDM-----ARDIDTHVHRIGRTGRAGHKGTAYTL 613 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + M + + ++ + Sbjct: 614 VTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKSSWFR 651 >UniRef50_Q6CCZ1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Yarrowia lipolytica RepID=PRP5_YARLI Length = 974 Score = 246 bits (627), Expect = 3e-63, Method: Composition-based stats. Identities = 54/471 (11%), Positives = 119/471 (25%), Gaps = 62/471 (13%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++ + V + F + P ++ R + + Sbjct: 398 YDKPTSIQAQAIP-AVMSGRDVISVAKTGSGKTLAFLL-PMLRHIKHRVGVETHTTTLSG 455 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + +T + +++ +L G P Sbjct: 456 ASSHPL-----------GVIITPTRELCVQIYRDLRPFLAA--LELTAVCAYGGSPIKDQ 502 Query: 326 FDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L ++V I + G + R + E + + LK + Sbjct: 503 IAALKKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFLVIDEADRMFDMGFEPQVLKLTQ 562 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVD-------QVVRPTG-------LLDPIIEVRP 427 QT+ SAT + + + + G + +EV Sbjct: 563 SIRPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQ 622 Query: 428 VA-TQVDDLLSEIRQRAAINE----------------------RVLVTTLTKRMAEDLTE 464 ++ LL + + A + L+ + A+ L + Sbjct: 623 NEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAATPIPNPKCLIFVERQESADSLLK 682 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + G +H + +R + I D + G VL+ ++ GLD+ + LV D+ Sbjct: 683 ELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIATSVAARGLDVKGLGLVVNWDSP 742 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + +GR R G A+ + +A I + + Sbjct: 743 NH-----MEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIKSSGNAPPAPVQLM 797 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + R +A + Sbjct: 798 TERFEFKVRSGTEKRHMYGFSGKGLERLQDERDATREHERRAYEGDEAGEA 848 >UniRef50_C7YLS4 Predicted protein n=2 Tax=Sordariomycetes RepID=C7YLS4_NECH7 Length = 621 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 51/395 (12%), Positives = 105/395 (26%), Gaps = 42/395 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM----- 260 + ++ + + + + + I + + +++ A Sbjct: 141 YDNPTPIQ-KFTIPSILQGHDVIGIAQTGSGKTAAYLIPILSKLMGKAKKLAAARPNPLT 199 Query: 261 --------EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 L L E ++ RT + G + Sbjct: 200 FREGLDEVTAEPLVLIIVPTRELAIQIFNEARKFCYRT-MLRPGVVYGGVPIREQIGLLG 258 Query: 313 LSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P L D++ L + ++ I + + D + G Sbjct: 259 KGCDVLVGTPGRLVDFIQRPKYLTLRRLRYMVIDEADELLDLDWNEDIDKILSGGEQDEG 318 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPII 423 + SAT + + + V G + I+ Sbjct: 319 --------------NVKFSLFSATFPKSARDLAKNYLAASHVRFRVGRAGSTTANIKQIV 364 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + D LL + R ++ +++ A++L ++L V +HSD Sbjct: 365 LPAEPHEKRDILLGLL--EEMHGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQ 422 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER +R R G +L+ + G+D+ V V D IGR Sbjct: 423 EREAAMRSFRSGNAPILIATGVSARGIDVRNVVHVINYDLPSMDHGG-IEEYTHRIGRTG 481 Query: 544 R-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 R G A + + M + T ++ Sbjct: 482 RIGHRGIATSFFTERDEGMGSVLTRTLLETNQEIP 516 >UniRef50_D0N623 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N623_PHYIN Length = 823 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 63/453 (13%), Positives = 126/453 (27%), Gaps = 75/453 (16%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 A+ + + +L + R P + I + ++ Sbjct: 367 PDAVYKAIKDLGFERPS------------------PIQMQAIPIGLQ--------KRDII 400 Query: 229 PLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + F I + P + + E+ L L E +L Sbjct: 401 GIAETGSGKTAAFVIPIIAYIYSLPATMVARTGEQGPLALVMAPTRELALQIEQEAIKLC 460 Query: 288 QRT--------QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T + G + + P L D L + L++ Sbjct: 461 KHTSVGLPEKMNPIKTLSVVGGQSIEDQGFRLREGVEIIIGTPGRLMDCLESHYLVLNQC 520 Query: 340 SHVTIPQIGGMYRGDRARKETLVEY--GFRLPSALDNRPLKFE---------EFEALAPQ 388 ++V + + M + V G L S + + EF+ Sbjct: 521 NYVVLDEADRMIDMGFEPQVVAVLENMGSLLKSENEEEMEQQLTLANRAQLGEFQHRLRV 580 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIR 440 T SAT + + + G ++ + + L+ +R Sbjct: 581 TTMFSATMPVEVERLAKTFLRHPSIVKIGDEDSGKNKRIEQRVMFMNPGKKRSKLVEVLR 640 Query: 441 QRAA---------------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +++V K+ + + +++ G R LH +R Sbjct: 641 DILSAQNVPVPRSRKEKVVDGAKIIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQR 700 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E ++ R G D+LV ++ GLD+P+V+ V D ++ IGR R Sbjct: 701 EESLKMFREGYCDMLVATDVAGRGLDIPDVTHVVNFDLP-----SKIQNYSHRIGRTGRA 755 Query: 546 VN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 G AI + + + E Sbjct: 756 GKDGVAISLLTDDDEEIMYDLKQYLVSTEMPVP 788 >UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA Length = 636 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 97/328 (29%), Gaps = 34/328 (10%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++ EE + + G + + P L D + + + Sbjct: 264 ATQIFEESKKFCYRSRMRPAVLYGGNNTQDQMRDLERGCHLIVATPGRLEDMIGRGKVGL 323 Query: 337 VDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + M + + E + QT+ SAT Sbjct: 324 DNIRFLVLDEADRMLDMGFEPQIRRIVEESRMPVTG--------------ERQTLMFSAT 369 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINE- 447 E + + + G + I + LL + N+ Sbjct: 370 FPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEENIKRSHLLDLLSNITKQNDG 429 Query: 448 -----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 L+ TK+ A+ L E+L H V +H D ER E +R R G +LV Sbjct: 430 DDENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRLFRCGRCPILVA 489 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 + GLD+P V V D + IGR R N G A + ++ ++ Sbjct: 490 TAVAARGLDIPNVKQVINFDLP-----AEVEEYVHRIGRTGRMGNLGTATSFFNEKNRNV 544 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGL 589 A + ++ E + Sbjct: 545 ANGLVRLLAETGQEIPGFLEEMTNSRSF 572 >UniRef50_B5ZGC1 DEAD/DEAH box helicase domain protein n=3 Tax=Acetobacteraceae RepID=B5ZGC1_GLUDA Length = 427 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 106/386 (27%), Gaps = 39/386 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + +E + F + Sbjct: 23 YASPTPIQAQSIPMLLEG-RDLLGMAQTGTGKTAAFALPLLHRL---------------- 65 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 +A R K + T+ + + + G ++ G Sbjct: 66 AMAPRPAP-----KGGARVLVLAPTRELVSQIADGFESFGRHQ-PPSVTTIFGGVSQVHQ 119 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + L A ++V + I + L E L + Sbjct: 120 VNALKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLP 179 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLS 437 T+ SAT + + D ++ + A + LL+ Sbjct: 180 KDRHTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLA 239 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +R + +V TL K +A ++ ++ E G LH + +R + R G Sbjct: 240 MLRT--PGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTA 297 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ G+D+ V+ V D S + IGR R G AI D Sbjct: 298 QVLVATDIAARGIDVDTVTHVFNHDLPSL-----PESYVHRIGRTGRAGRNGFAITLCDA 352 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 + + + R Q + H Sbjct: 353 EQRAWLRDVEREIGRALIVQDDHPWH 378 >UniRef50_Q14NT1 Putative atp-dependent rna helicase protein n=1 Tax=Spiroplasma citri RepID=Q14NT1_SPICI Length = 443 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 103/342 (30%), Gaps = 22/342 (6%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + L + K + L + +++ ++ + Sbjct: 39 QDIIGKSHTGTGKTVAF---IVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATY 95 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 + G L ++V I R D+ + L E Sbjct: 96 LEGVNA-TLICGGSHIQRQIYALR-KSNIIVGTPGRIADHINRKTLRLDKIKTIVLDEAD 153 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GL 418 L K + QT+ SAT LE + + V Sbjct: 154 EMLKMGFKTDLDKVFQNAPNKYQTLLFSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNN 213 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + + D L++ + +R ++ + TK + E L +G ++ Sbjct: 214 ISQHYVNAISYHKEDVLIALYKHL--QPKRSIIFSNTKVFTNKIAEMLTNNGIPCCIING 271 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D ER + +R R G+ V+V ++ G+D+ + V D S I Sbjct: 272 DKSRYERGQAMRLFRDGKVRVMVATDVAARGIDIDNIDYVINYDIPT-----ERESYIHR 326 Query: 539 IGRAARNV-NGKAILYGD-KITPSMAKAIGETERRREKQQKY 578 IGR AR G AI + + +G ++++ + Sbjct: 327 IGRTARAGATGVAISIVSNRNDLREIQHLGAYQKKKIELLDI 368 >UniRef50_P38712 ATP-dependent rRNA helicase RRP3 n=28 Tax=Saccharomyceta RepID=RRP3_YEAST Length = 501 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 60/429 (13%), Positives = 131/429 (30%), Gaps = 25/429 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ + + + + + A Sbjct: 86 LNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK----TAAFAIPILN 141 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L +++ + T+ + + E G R + G L Sbjct: 142 RLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRS-TCIVGGMNMMDQARDLMRKP 200 Query: 334 LLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-PQTI 390 +++ + + + + + + E L + + T Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRA 443 SAT + + + + V ++ V P + L+ + + Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +++ T TK AE L+ LH D++ +RM + + G+ +LV Sbjct: 321 --GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+P V +V D +S I +GR AR GK+I + + Sbjct: 379 DVAARGLDIPSVDIVVNYDIPV-----DSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 433 Query: 563 KAIGETERRREKQQKYNEEHGIT-PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 I E ++ ++ ++ +T ++K +++ K K R Sbjct: 434 LRIEEVLGKKLPKESVDKNIILTLRDSVDKANGEVVMEMNRRNKEKIARGK-GRRGRMMT 492 Query: 622 NVPMDMSPK 630 MDM + Sbjct: 493 RENMDMGER 501 >UniRef50_A4SWL3 DEAD/DEAH box helicase domain protein n=5 Tax=Proteobacteria RepID=A4SWL3_POLSQ Length = 500 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 52/393 (13%), Positives = 105/393 (26%), Gaps = 34/393 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-RERIVQAMEEIK 264 + +++ ++ + L + F + + Sbjct: 39 FTQATSVQAQVIPAALAGGDLL-VSSQTGSGKTAAFLLPLINQLIEDNPNNSPVPGRAQP 97 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L L + L + + G G + + P Sbjct: 98 KVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQAL-KGALLVVATPGR 156 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + D + I + M + ++ A Sbjct: 157 LLDLCDSKAIRLDDVKQLVIDEADRMLD-----------------MGFADDLEAIDKRCA 199 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + D ++ + + LL Sbjct: 200 GRNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLE 259 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I A ++ + +V T+ +E + + L +G LH + RM + LR G Sbjct: 260 HILADATLD-QAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGHT 318 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ G+D+P +S V G IGR R G AI + Sbjct: 319 KILVATDVAARGIDVPRISHVIN-----FGLPMKPEDYTHRIGRTGRAGRNGVAITLVEH 373 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + I ++ Sbjct: 374 RDRAKIRNIERFTQQDIVASVIAGLEPQAKPSF 406 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 113/677 (16%), Positives = 199/677 (29%), Gaps = 77/677 (11%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++L + TL+ S + + + P +V+ Sbjct: 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATG 69 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A L E++ F + A +PS +T + S RL A Sbjct: 70 READDLAAELRGVFGDA--------------VALLPSWETLPHERLSPGVDTVGTRLMAL 115 Query: 128 KAMLERRD-------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + + D VVV SV ++ P L + L LTVG ++ RL EL Sbjct: 116 RRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELA 175 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y R D +RG F VRG ++DIF + + +RVE + +E+ + +F + + I Sbjct: 176 YTRVDMVGRRGEFAVRGGILDIFAP-TAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDI 234 Query: 241 FTIYPKTH---YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 T+ ++ R A + A E +T L + Sbjct: 235 HTLVAFACRELLLSEDVRARAAQLAARHPAA--------------ESTVTGSASDMLAKL 280 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 E G+E L G L D LP ++V + + + R R Sbjct: 281 AEGIAVDGMEAVLPVLWSDGHAL----LTDQLPDGTPVLVCDPEKVRTRAADLIRTGREF 336 Query: 358 KETL--VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG-NYELEKSGGDVVDQVVR 414 E V + + + + +A + S + Sbjct: 337 LEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIEL 396 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 R +D++ + +R A + A + E L E Sbjct: 397 DVRAA---PSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAG 453 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 L D + G VL LR+G+ +P +LV I + D G S Sbjct: 454 ML--DPGQ--------APKPGVVGVL--QGPLRDGVIIPGANLVVITETDLTGSRVSAAE 501 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 A + + P A + ++ E T G ++ + Sbjct: 502 -----------GKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYL 550 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + P+ D + + + + L G + + Sbjct: 551 VLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ--APALSRLGGSDWANTKTKARRA 608 Query: 655 AAQIRDQLHQLRELFIA 671 +I +L L A Sbjct: 609 VREIAGELVSLYAKRQA 625 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 61/460 (13%), Positives = 120/460 (26%), Gaps = 36/460 (7%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + EL ++ D LT P + + ++ Sbjct: 634 DTPWQAEL-EDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFK 692 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + + Q Q E M+ + + D Sbjct: 693 AVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSR------FTDAAESRAVIDG 746 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + E + + Sbjct: 747 LADGSVDIVIGTHRLLQTGVRWKDLGLV---VVDE-----EQRFGVEHKEHIKSLRTHVD 798 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINE 447 + +SATP LE S + + T + + V D + + +R+ + Sbjct: 799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDG 858 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + E R + H + ++ E D+LV + Sbjct: 859 QAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTI 918 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD G + L Q GR R+ + + Sbjct: 919 VETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPQ----VPL 970 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ET R N E G G+ + D+ G + V Sbjct: 971 TETAYDRLATIAQNNELG---AGMAVALKDLEIRGAGNVLGIEQSG-------HVAGVGF 1020 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 D+ + + + + A A + +D L Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDL 1060 >UniRef50_B6IS62 DEAD/DEAH box helicase protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IS62_RHOCS Length = 528 Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats. Identities = 50/379 (13%), Positives = 94/379 (24%), Gaps = 17/379 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE-LAARRK 272 + L ++ + T + V L Sbjct: 13 LGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQRIAT 72 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + T+ + E G P + L Sbjct: 73 TARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRI-QTGTILGGMPYRQQLEMLRRR 131 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 L+V + + L E L QT+ Sbjct: 132 VDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLL 191 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-------TQVDDLLSEIRQRAA 444 +AT + D V + LL + Sbjct: 192 FTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLG-GE 250 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + +V TK A+ L + L E G + LH D+ +R +++ LR G +V+V + Sbjct: 251 EFGKGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVIVATD 310 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + G+D+ +++ V D + + IGR R +G + ++ + Sbjct: 311 VAARGIDIADLTHVINFDLP-----KQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVR 365 Query: 564 AIGETERRREKQQKYNEEH 582 AI + Sbjct: 366 AIEAYTNKAADMHVLPGLE 384 >UniRef50_D1B384 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B384_SULD5 Length = 436 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 57/455 (12%), Positives = 109/455 (23%), Gaps = 57/455 (12%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I + EL Y + P ++ I L +E Sbjct: 10 EPIRDAVRELGYTKPT------------------PVQNKVIPLVLE--------GKDVMA 43 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + ++ ++ L L + + + Sbjct: 44 TAQTGTGKTAAYALPLLH--ILNKKTQKSTTSKVVRALILVPTRELASQVG-ASVQAYGK 100 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 G + P L +++ + + V + Sbjct: 101 NVPLSSAAIYGGVKFTPQAKKLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADR 160 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + QT+ S S + Sbjct: 161 ILD-----------------MGFWDEVQTLLGLFPKKRQTLLFSVGLSKSVKRLSEVSLK 203 Query: 410 DQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTE 464 V +E + + +VLV T TK+ A+++ E Sbjct: 204 KPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIGTHNWHQVLVFTKTKQSADEVGE 263 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL G + LH D +R + I + VLV ++ GLD+ ++ V + Sbjct: 264 YLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVATDIASRGLDIEDLPYVINYELP 323 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 GR R G+AI + + K I + + K + Y Sbjct: 324 -----GDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIEKILKYTIKTEFYPGFET 378 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 K I A K + + Sbjct: 379 KEWVEKEAKKHTIQAKIDREKANKRPNGLRKKREE 413 >UniRef50_D1B113 DEAD/DEAH box helicase domain protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B113_SULD5 Length = 463 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 61/455 (13%), Positives = 122/455 (26%), Gaps = 23/455 (5%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 +E L+ + I V + L Sbjct: 18 LETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALH---VKQMR 74 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 ++ L + ++ EL + + + ++ G L +VV Sbjct: 75 IQSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLC-GGARFVPQCISLEHGAHIVVGTP 133 Query: 341 HVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + + L E L K QT+ SAT Sbjct: 134 GRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFPRE 193 Query: 400 ELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + + I + L + + + V++ Sbjct: 194 IEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNEM--PKSVII 251 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 TK L L E G LH D++ + R E + G +LV +L GLD Sbjct: 252 FCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLD 311 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 + +V +V + + IGR R GKAI + S + Sbjct: 312 IKDVEMVINYELPH-----TIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHELER-VG 365 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 + E + + + + + G K +A G + + Sbjct: 366 FAFTCKDAREILPLHVKPKRAEFITLCIDGGKKQKVRA-GDILGVLTKDIGLEGSLIGKI 424 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +K + + A I+++ ++ Sbjct: 425 DILEKYAYVAIKREYADKAFNGLCATTIKNRRFKI 459 >UniRef50_Q2YZZ9 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q2YZZ9_9BACT Length = 453 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 53/378 (14%), Positives = 96/378 (25%), Gaps = 37/378 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + F + + L Sbjct: 23 RPTPIQADAIPPA-MSGRDVMASAVTGSGKTAAFLLPILHQLIDRPRGT-------TRAL 74 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L L + L T G + ++ P L D Sbjct: 75 VITPTRELAAQILEDLNDLAVHTP-ISAAAVFGGVSIRPQEHAFRRGVDVLIGTPGRLLD 133 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + A + H+ + + M + + Sbjct: 134 HFRAPYAKLAGLEHLVLDEADRMLD-----------------MGFLPDIRRILKHIPARR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQVDDLLSEIRQR 442 QT++ SAT + + + + V PVA ++ L + Sbjct: 177 QTLFFSATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQELKAALLVALLK 236 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 LV T TK A L E+L G + +H + R E + + G++ VLV Sbjct: 237 RDDIRDALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVA 296 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSM 561 ++ G+D+ E+ V D I +GR AR G A + Sbjct: 297 TDIAARGIDVTELGHVVNFDVPLV-----PDDYIHRVGRTARAEATGDAFTFVSPQEQGD 351 Query: 562 AKAIGETERRREKQQKYN 579 I ++ + Sbjct: 352 LTRIERVIGKQLPRITVP 369 >UniRef50_Q6MN50 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MN50_BDEBA Length = 656 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 52/433 (12%), Positives = 119/433 (27%), Gaps = 29/433 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F L F I + + + + Sbjct: 64 FTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIENI--------DSTVKDTQ 115 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E+ L + + + G + P L Sbjct: 116 ALVLSPTRELALQVA-EQLTLLGKKKGVRVVTIYGGASYRTQIDGIKRGAHIVVATPGRL 174 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + V + + M + + + Sbjct: 175 VDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDD---------SDSVRA 225 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQR 442 A +T SAT + + + + + IE + I + Sbjct: 226 ACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGRL 285 Query: 443 AA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ TK +L + L + G LH D ER ++ + + V+ Sbjct: 286 LQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKVI 345 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GLD+ +++ V S + IGR RN G AI + Sbjct: 346 VATDVAARGLDIKDLTHVVN-----HSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQL 400 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 ++ + + + + + + + + + ++ + + I Sbjct: 401 TLLRRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQDLIQA 460 Query: 620 PDNVPMDMSPKAL 632 D ++S + L Sbjct: 461 EDINFKELSKEEL 473 >UniRef50_B3RVR9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RVR9_TRIAD Length = 633 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 56/400 (14%), Positives = 115/400 (28%), Gaps = 41/400 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + FD + + F + + + + + L Sbjct: 76 FPIQAQTFDYVYDGQDVIG-QARTGTGKTLSFALPITEKLIKKKRSDDK--IRPPKVLVL 132 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L E + L+ + G + P + D++ Sbjct: 133 APTRELAIQITSEFKALSGS---LKVVCIYGGVPYAEQENHLRNGIDIVIGTPGRIKDHI 189 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L++ HV + ++ M + + PQT Sbjct: 190 DRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKDRH--------------PQT 235 Query: 390 IYVSATPGNYELEKSGGDVVDQVVR----------PTGLLDPIIEVRPVATQVDDLLSEI 439 + SAT + L+ + + ++ + P + + + Sbjct: 236 LLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIGDLV 295 Query: 440 RQRAAINERVLVTTLTKRMAEDLT--EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + R ++ + TK+ A +L L++ V+ LH DI +R ++ R G F Sbjct: 296 KVYGGDHARTIIFSPTKKEANELALSSVLKQE---VQVLHGDIQQAQREVTLKGFREGNF 352 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 LV ++ GLD+PEV LV + + + I GR R G I + Sbjct: 353 PCLVATDVAARGLDIPEVDLVIQCEPP-----KDADTYIHRSGRTGRANRTGICITFYKP 407 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 K+I + + I + Sbjct: 408 THQDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAKSL 447 >UniRef50_B8JG82 DEAD/DEAH box helicase domain protein n=8 Tax=Bacteria RepID=B8JG82_ANAD2 Length = 488 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 109/394 (27%), Gaps = 35/394 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE-----I 263 ++ + + F + Sbjct: 38 PTPIQAQAIPPAL-GGRDVIGAAATGTGKTAAFLLPIIERLGGGAPAPKDRPAAAHGKPG 96 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L E R R + + G G ++ + P Sbjct: 97 PRALVLAPTRELAVQIAGELDR-FGRGRHVRGALVIGGVGMGAQSAALRDHEVI-VATPG 154 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D+L + + + + M + + Sbjct: 155 RLVDHLQQGTARLDGLEVLVLDEADRMLD-----------------MGFAPQLKRILARV 197 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLLSEI 439 QT+ SAT E + + D V + E + Q + L + Sbjct: 198 PKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLM 257 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + LV T TKR A+ + + L+ G +V +H+D +R + R G++ V Sbjct: 258 ALLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRV 317 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ G+D+ E+ V D + +GR AR +G+A + Sbjct: 318 LVATDIAARGIDVAEIGHVVNFDLPHV-----PEDYVHRVGRTARMAASGRASAFASPEE 372 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + + I R + + EH L + Sbjct: 373 LDLLRDIERLTRAPIPRAEVPREHATFQAELQRA 406 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats. Identities = 63/382 (16%), Positives = 101/382 (26%), Gaps = 35/382 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + L F + +T Sbjct: 34 YATPSPIQALAIPP-IRDGRDVEALARTGTGKTAAFALPVIHRLLTGA-GGAAPSGPPGA 91 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A E +Q + G ++ G P Sbjct: 92 VRALILSPTRE--------LASQTAGTVRTCIRGCG---------LTVALAIGGAPKDRQ 134 Query: 326 FDYLPADGLLVVDESHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V + D L E L Sbjct: 135 ARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLP 194 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 + QT+ SAT + + + + P A + LL+ Sbjct: 195 VRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLA 254 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +R+ A R +V T TK+ A+ L L G LH D V R + D R G Sbjct: 255 VLRREA--GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRL 312 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV +++ G+D+ +V+LV D + I IGR AR G A+ D Sbjct: 313 LVLVATDVMARGIDVEDVALVVNFDIP-----EQPETYIHRIGRTARAGRRGTALSLCDP 367 Query: 557 ITPSMAKAIGETERRREKQQKY 578 + I R Sbjct: 368 AERLKLRDIERQSGARITVIDP 389 >UniRef50_C5DIA1 KLTH0E10890p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DIA1_LACTC Length = 589 Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats. Identities = 57/377 (15%), Positives = 106/377 (28%), Gaps = 33/377 (8%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +I+ + ++ V F + F I P Sbjct: 199 GIIETKLKYLEPTPIQRATIPN-VLNGRDFVGVAATGSGKTLAFLIPPLCQLNNTPPLND 257 Query: 258 QAMEEIKEELAARRKVLLENNKLLEE-QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + L L E + + + + G+ +YS Sbjct: 258 ITKMDGPSALILAPTRELAQQIEAEANKVVKFLHRPTKVVSLVGGHSVEEISYSLSHGCD 317 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P L D L ++ L++ + + + M +++ Sbjct: 318 ILVATPGRLIDCLESNILVLQQVRTLILDEADRMIDFG-----------------FEDQL 360 Query: 377 LKFEEFEA--LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQ 431 QT+ +AT + + G + G D I +V Sbjct: 361 TTILARTESVKGRQTMMFTATMSSTIERIANGYLNKPAYVRVGSQDTKAQIKQVVQYLPS 420 Query: 432 VDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEI 488 + S + + R +++ KR A+ L RV LH +R Sbjct: 421 EEQRFSRLCRDVLPRFRSPIMIFINYKRTADWLAAKFSSETRYRVTTLHGSKSQEQREHS 480 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + LR G+ D+++ ++ G+D+P VSLV S I IGR R Sbjct: 481 LNLLRSGKADIMIATDVAGRGIDIPNVSLVVN-----FQMCTSFEGYIHRIGRTGRAGKS 535 Query: 548 GKAILYGDKITPSMAKA 564 G A+ + + Sbjct: 536 GCALTFLTERDEPKVVE 552 >UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiothermus RepID=C1XGK2_MEIRU Length = 556 Score = 244 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 63/405 (15%), Positives = 111/405 (27%), Gaps = 19/405 (4%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E + + T + + +A R E Sbjct: 10 PEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAARER 69 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + LT + L++ EL + + ++ G + L +VV Sbjct: 70 GRAPRALILTPTRELALQVAKELEWLAPH----LTITPIYGGTGYGKQAEALKRGTDVVV 125 Query: 338 DESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 I + R L E L + + E QT+ SAT Sbjct: 126 ATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFSATL 185 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD-----PIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + S + + + P+ ++ L + A ER +V Sbjct: 186 PTWARRLSERYQKAAIHINVIKDEAISYEEVAIQAPIHNRLSVLSDLLFAYA--PERTIV 243 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 T TK DL LE +H D+ ++R ++ R G VLV ++ GLD Sbjct: 244 FTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGLD 303 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 +PEV LV S + GR R GK ++ + + + Sbjct: 304 IPEVDLVVHYRLP-----DQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELK 358 Query: 571 RREKQQKYNEEHGITPQGLN-KKVVDILALGQNIAKTKAKGRGKS 614 R K+ + + + + Sbjct: 359 RNFKRVNPPTPEEVMAAKWAMLARRIAKQPEADKKLWREQAERLI 403 >UniRef50_A8QAF6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QAF6_MALGO Length = 885 Score = 244 bits (622), Expect = 9e-63, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 115/451 (25%), Gaps = 37/451 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAMEEIK 264 ++ + + + F + H + Sbjct: 273 YVAPTPIQSQAIP-AIMSGRDMIGVAKTGSGKTMAFLLPMFRHVKDQRPVESGE----GP 327 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + Q + G + P Sbjct: 328 VALVMTPTRELAVQIFRDAQPFLRAF-NLRGACAYGGTPISEQIGEMKKLVEVVVATPGR 386 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + D L A+ G + R L E + + +K Sbjct: 387 MIDLLTANS--------------GRVTNMQRVTYLVLDEADRMFDLGFEPQVMKILGLIR 432 Query: 385 LAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + + + G + I+EVRP +++ LL Sbjct: 433 PDRQTVLFSATFPKPMESLARKMLRHEPLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLL 492 Query: 437 SEI--RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + R L+ + A++L L + G LH D +R + D + Sbjct: 493 EILGQLYHHDEDARTLIFVDRQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKA 552 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +L ++ GLD+ ++ LV D + GR R N G + + Sbjct: 553 GIVPILTATSVAARGLDVKQLKLVVNYDVPNH-----LEDYVHRAGRTGRAGNQGTCVTF 607 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 AK I R + E + + A G + Sbjct: 608 ITPEQDRYAKDIVAALRASKATVPPELEALASQFKEKLQQGKAHASGSGFGGRGLERLEA 667 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 SR + + + + + Sbjct: 668 SRERLLQAQASIFIEDEDADPEAVAARAADE 698 >UniRef50_Q4UA43 DEAD-family helicase, putative n=3 Tax=Piroplasmida RepID=Q4UA43_THEAN Length = 757 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 47/390 (12%), Positives = 108/390 (27%), Gaps = 26/390 (6%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 + I P + I + +E + + F + T+ Sbjct: 352 EAIKKAGYIKPTPIQMQAIPIALE--------MRDLIGIAVTGSGKTAAFVLPMLTYVKK 403 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + L L E + + + G + + + Sbjct: 404 LPPLDDETSLDGPYALILAPSRELALQIYDETVKFSAFCS-CRSVAVVGGRNAESQAFEL 462 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D L ++ ++V + + M + + Sbjct: 463 RKGCEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNL 522 Query: 372 LDNRPLKFEEFE-------ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DP 421 D E E T SAT + + + G + Sbjct: 523 KDRDESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKT 582 Query: 422 IIEVRPVATQVDDLLSEIRQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 I + Q + + +++ K+ + +T+++ + G R LH Sbjct: 583 SITQQLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVITKHITKIGYRAVSLHGGK 642 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R + + + G +D+LV +++ GLD+ + +V D + ++ IG Sbjct: 643 TQESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMP-----KDIQTYTHRIG 697 Query: 541 RAARNV-NGKAILYGDKITPSMAKAIGETE 569 R R G +I + + + + Sbjct: 698 RTGRAGLKGLSISFVTDADVDLFYDLKQLL 727 >UniRef50_Q54T87 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54T87_DICDI Length = 586 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 60/418 (14%), Positives = 111/418 (26%), Gaps = 31/418 (7%) Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVEL---FDEEVERLSLFDPLTGQIVSTIPRF 241 D +R + V+ +S + F + + ++ Sbjct: 86 DIVLSPTEWRKKHNVL--IEGKSQPNPFQKFTDYEFPRMFQHIFQ-GFTAPTVIQGQSWP 142 Query: 242 TIYPKTHYVTPRERIVQAMEEI--KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I V L + + T+ + + E Sbjct: 143 IILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEE 202 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + S R L G L +V+ + + + Sbjct: 203 VCKTSIRGTSIRQLCAYGGLGKID-QSRILRNGVDIVIGTPGRLNDLL-RKHHLSSVQYL 260 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 L E L + + QT+ SAT + + D + G Sbjct: 261 VLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQ 320 Query: 420 DPI-----------IEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYL 466 + I+ D + EI + + V+V K +D YL Sbjct: 321 ELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKYKCDDFQHYL 380 Query: 467 E-EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 + + LHS D R ++ R +L+ ++ GLD+P V V Sbjct: 381 STQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLP- 439 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + IGR R G A Y TP+ + + + +R ++ E Sbjct: 440 ----GNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPN-LRDLVKILQRTNQKIPDFLEK 492 >UniRef50_C7H231 ATP-dependent RNA helicase DeaD n=4 Tax=Ruminococcaceae RepID=C7H231_9FIRM Length = 395 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 54/367 (14%), Positives = 96/367 (26%), Gaps = 16/367 (4%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + + +A K + + T+ Sbjct: 25 TEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPE----KKYPQAVIMAPTRE 80 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MY 351 + + E ++ G L +VV + Sbjct: 81 LAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQIVVATPGRLMDHYKHHSI 140 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + L E L E SAT ++ + Sbjct: 141 DLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFSATISREVMDIGWLYQNNA 200 Query: 412 VVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYL 466 P I + T + LS++ Q +RV+V TK L L Sbjct: 201 EEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRVMVFCDTKFNTATLANQL 260 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G V LH D+ ER +I+++ R G +LV ++ G+D+ +V V D Sbjct: 261 ARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAARGIDVSDVDAVINYDVP-- 318 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 IGR R G + L+ + + R + + + Sbjct: 319 ---GDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLRLTRNTDLCTPVHFDFNHE 375 Query: 586 PQGLNKK 592 + KK Sbjct: 376 RIVVEKK 382 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 95/679 (13%), Positives = 197/679 (29%), Gaps = 106/679 (15%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLED-----------GLAHQTLLGVTGSGKTFTIANVIAD 55 + + + Q +++ L + L D +QT+ V + + +A + Sbjct: 1 MVTPLPATFHQLASVQALGKVLADLPGIAALAASLRPGYQTIAPVPAAARPALLAALAYH 60 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 PT+ + + A + +++++ + V P +D + S Sbjct: 61 RTTPTLYITLSAESALRAADDLRQWLGSDQV-------------WLFPPADALPYEQMSP 107 Query: 116 NEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + RL+ + + V+V SV A+ P + L GM + + Sbjct: 108 GRDVLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETV 167 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L + Y R + G RG ++D++P + + LR+E FD+E++ L FDP T + Sbjct: 168 VTLLDNGYQRVAMVEEPGELSRRGAILDVWPPGDE-LPLRIEWFDDEIDSLRRFDPATQR 226 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + R I P R E ++ A L + Sbjct: 227 SEQRLERADIGPPHEIPFWRRD-----EALRRIDALDMSQLRREVRDEWAV--------A 273 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F + TL DYLP ++ + E H+ Sbjct: 274 REQLAGGQRFEGRAFYAPFFYDQT-----ATLLDYLPPQSMVALAEGHLLAQHADE-IDV 327 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 A + LP + S + D+ Sbjct: 328 QAAGYRDQLLALGELPPDFP-------------RPYLRWSELHLKESAKLVVVDLSHNEY 374 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT-EYLEEHGE- 471 Q+ L+ + ++ E V+ T ++L E L + Sbjct: 375 PDALPPLSFGVPPLYGGQLRRLIDTVVEQVRGGELVVAVTAQAARLQELVGERLAQETVS 434 Query: 472 -RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R +H ++ G + ++ L + D++ G + Sbjct: 435 GRFVPIHGGLEA--------------------------GFTLADLHLTLLTDSEIFGVRQ 468 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 R L + + A I + + T + Sbjct: 469 R-RPLAERRRKTGTTDR--AAFLRTLKPGDYVVHIEHGIAIFDGMIRR------TVSEVE 519 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + + G++ P+ + D V + + L + + Sbjct: 520 REYLVLRYAGEDKI---------YVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRK 570 Query: 651 EFEEAAQIRDQLHQLRELF 669 + ++L +L Sbjct: 571 VRAAVQDLAEELLRLYAQR 589 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 68/424 (16%), Positives = 123/424 (29%), Gaps = 35/424 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L P V + ++ A + + Sbjct: 618 DQLRAIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQ 677 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + M +E SRF S + + L + ++ +H + Sbjct: 678 QHFDTFRKRMAAF--PVTVEMLSRFRSP----KEQDAIIRDLARGKIDIIIGTHRLLSND 731 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + R + + + ++ATP L + Sbjct: 732 VVFRNLGLVIIDEE--------QRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAG 783 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + D V T D I V D L+ IR+ +V V + + E L Sbjct: 784 IRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERL 843 Query: 467 EEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 H + E +++ D G +DVLV ++ GLD+P + + I DA Sbjct: 844 RRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDAT 903 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R + A+ + R R + + E G Sbjct: 904 NYGLAQ----LYQLRGRVGRGATRAYAYLLY----NAARVMTNDARLRLEAIQEATELG- 954 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G + V D+ + L+Q + +L+ + Sbjct: 955 --AGFRIAMRDLEIRGAGNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRKLKQDVD 1005 Query: 645 QHAQ 648 + A+ Sbjct: 1006 ELAE 1009 >UniRef50_C4LXN8 DEAD/DEAH box helicase, putative n=3 Tax=Entamoeba RepID=C4LXN8_ENTHI Length = 722 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 58/431 (13%), Positives = 119/431 (27%), Gaps = 33/431 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + +TI H + R Sbjct: 160 YEKPSPVQRQAIP-VIMSGYDAIVCAKTGSGKTLAYTIPLIKHVMAQRPLSKGE---GPI 215 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L E + + G + + P + Sbjct: 216 GIVFAPIRELAEQI-NTEINKFGKYLNIRSVAVFGGTGISNQIGALKRGTEIVVCTPGRM 274 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D ++V + R L E + + E Sbjct: 275 ID-------ILVTNNGRI-------TNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRP 320 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 Q + SAT + + + + G ++ I+EV +++ L+S Sbjct: 321 DKQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIETKKKIERLISI 380 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++ R+++ T T++ ++L + L E LH ID ++R I++ + G Sbjct: 381 VLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIGR 440 Query: 499 -VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +L+ +L GLD+ + LV D + +GR R GKAI + K Sbjct: 441 TILITTSLCARGLDVKGLELVINYDCPNH-----LEDYVHRVGRTGRAGKRGKAITFITK 495 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 ++ I + K ++ + K K Sbjct: 496 EEERYSEDIVKALTLSGGSISKELNDMYEEWKTKKLFLETKEGKKGYGGNGFKFDIKEEI 555 Query: 617 IVEPDNVPMDM 627 + + M Sbjct: 556 TTMENKIGGYM 566 >UniRef50_Q0E3X4 DEAD-box ATP-dependent RNA helicase 35A n=8 Tax=Eukaryota RepID=RH35A_ORYSJ Length = 627 Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 108/388 (27%), Gaps = 38/388 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++V+ V + F + V +E ++ + + Sbjct: 204 QPTPIQVQGLP-VVLSGRDMIGIAFTGSGKTLVFVLPLI--MVALQEEMMMPIVPGEGPF 260 Query: 268 AARRKVLLENNKLLEEQ-------RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 E K + ++ G + Sbjct: 261 GMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVA 320 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + ++T+ + + ++ + Sbjct: 321 TPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLG-----------------FEDDIREVF 363 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLL 436 + QT+ SAT + +V V+ G +I+ + ++ Sbjct: 364 DHFKAQRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARII 423 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + VLV K + + EYL G +H D ER I + G+ Sbjct: 424 YLLECLQKTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGK 483 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 DVLV ++ +GLD P++ V D + + IGR R G A + + Sbjct: 484 KDVLVATDVASKGLDFPDIQHVINYDMP-----AEIENYVHRIGRTGRCGKTGIATTFIN 538 Query: 556 KITPS-MAKAIGETERRREKQQKYNEEH 582 K + + +++ Sbjct: 539 KNQTETTLLDLKHLLKEAKQRIPPVLAE 566 >UniRef50_Q9FZ92 Putative DEAD-box ATP-dependent RNA helicase 44 n=3 Tax=Embryophyta RepID=RH44_ARATH Length = 622 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 56/412 (13%), Positives = 120/412 (29%), Gaps = 16/412 (3%) Query: 188 FQRGTFRVRGEVIDIFPAE-SDDIALRVELFDEEV---ERLSLFDPLTGQIVSTIPRFTI 243 + R D + I + ++E + ++ F + Sbjct: 207 EEMNERDWRIFKEDFNISYRGSKIPHPMRNWEETIPLGLEQRDVIGISATGSGKTAAFVL 266 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + E L L + E + R + Sbjct: 267 PMLAYISRLPPMREENQTEGPYALVMVPTRELAHQIEEETVK-FSRYLGFKAVSITGWES 325 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + P L D L +++ +++ + + M D + + V Sbjct: 326 IEKQALKLSQGCEIVIATPGRLLDCLERRYVVLNQCNYLVLDEADRMIDMDFEPQVSEVL 385 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 + + + E + + T SAT + + + VV G I Sbjct: 386 DVMPCSNLKPEKEDEELEEKKIYRTTYMFSATMLLSVERLARKFLRNPVVVTIGETTKFI 445 Query: 424 EVRPVATQVDDLLSEIRQRAA---INERVLVTTLTKRMAEDLTEYLEEHG-ERVRYLHSD 479 + + T+ D S +++ ++ +V T+ + + + LE+ G RV LH+ Sbjct: 446 TQQVIMTKESDKFSRLKKLIDDLGDDKTAIVFVNTRNKVDYIVKNLEKVGRCRVTTLHAG 505 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 +R + + + F+VLV ++L GLD+ +++ V D + I Sbjct: 506 KSQEQRDYSLEEFKKKRFNVLVTTDVLGRGLDILDLAQVINYDMPN-----TMDLYTHRI 560 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 GR R G A + + + + E Sbjct: 561 GRTGRAGKTGVATTFLTLEDKDVFYGLKQKLNECNSLVP-PELARHEASKFK 611 >UniRef50_C4V5M7 DEAD/DEAH box helicase domain protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5M7_9FIRM Length = 426 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 62/426 (14%), Positives = 114/426 (26%), Gaps = 35/426 (8%) Query: 233 QIVSTIPRFTIYPKT---HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + I P + + L AR K + + Sbjct: 23 TQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLARIKPQGAAAQA----LVIAP 78 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + + E + G + L LV+ + + Sbjct: 79 TRELAIQIEHVAASL-AEPLGIGTTVIYGGADIERQKEKLRRSPQLVIGTPGRLLDHVRR 137 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 R K L E L A Q SAT + + + Sbjct: 138 GTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLALFSATMPERIVRLTKRFM 197 Query: 409 VDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + ++ ++ ++D L + I + A +V TK Sbjct: 198 TNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEA--PYLAMVFCATKERTRA 255 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L + G V L D+ +R ++R R + +L ++ GLD+ V+ V Sbjct: 256 LMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIAARGLDIEGVTHVYNY 315 Query: 522 DADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 D + I IGR R GKAI + + + Sbjct: 316 DLP-----PTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALKA--------- 361 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + KK G+ A+ KA ++ P K + + + Sbjct: 362 --CLRRDVVKKKKRPAPPAGEGDAQKKAHPPRDAKRRALPKRTKSKPRSKKAGKTVTNIG 419 Query: 641 GLMMQH 646 + Sbjct: 420 RRSRRK 425 >UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa RepID=B3L5Y4_PLAKH Length = 669 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 56/400 (14%), Positives = 117/400 (29%), Gaps = 42/400 (10%) Query: 211 ALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++++ + + F + + R E L Sbjct: 242 PTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLVMICLEGELRCQIEEGEGPLGLII 301 Query: 270 RRKVLLENNKLLEEQRLTQ------RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L + + + + G + + P Sbjct: 302 CPSRELATQTHNVIKYFCEFLHEGGKYPMLRSLCMIGGVSTFDQGREIQKGIHMVVATPG 361 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D L + + ++ + + + + Sbjct: 362 RLNDMLNKKRMTLEQCRYLCFDEADRLIDLG-----------------FEEEVRNTLDHF 404 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLL 436 + QT+ SAT E + +V+ ++ G +E ++ LL Sbjct: 405 SRQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELKLSYLL 464 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + VL+ K+ +D+ EYL G +H ++ ER E I R G+ Sbjct: 465 EVL---QKTGPPVLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGK 521 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 D+LVG ++ +GLD P + V D + + + IGR R G A + + Sbjct: 522 KDILVGTDVASKGLDFPSIEHVINYDMP-----KDIENYVHRIGRTGRCGKTGIATTFIN 576 Query: 556 KI-TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 K ++ + +++ + +G+N K + Sbjct: 577 KNQEEAILLDLKALLIEAKQKIPPF-LEMLDSKGINLKEI 615 >UniRef50_Q966L9 ATP-dependent RNA helicase glh-2 n=4 Tax=Caenorhabditis RepID=GLH2_CAEEL Length = 974 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 44/401 (10%), Positives = 95/401 (23%), Gaps = 50/401 (12%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-RERIVQAME 261 + ++ + + + F + + Sbjct: 569 HAGYTKTTPIQ-QYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGG 627 Query: 262 EIKEELAARRKVLLENNKLLEEQR-LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + L + E ++ Q + G G Sbjct: 628 CYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPV--YGGLAVGYNKGQIEKGATIIVG 685 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + + + + + + M Sbjct: 686 TVGRIKHFCEEGTIKLDKCRFFVLDEADRMID----------------AMGFGTDIDTIV 729 Query: 381 EF----EALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD-------PIIEVRPV 428 + + QT+ SAT + E + + + ++ + E Sbjct: 730 NYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDR 789 Query: 429 ATQVDDLLSEIRQRAAIN----------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + + D LL + ++ +V + MA+ L L +H Sbjct: 790 SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + ER E +R R G VL+ + GLD+ V V D + I Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMP-----DNIDDYIHR 904 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 IGR R G+A + ++ + ++ Sbjct: 905 IGRTGRVGNAGRATSFIS-EDCNLLSELVRVLSDADQLVPE 944 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 104/664 (15%), Positives = 207/664 (31%), Gaps = 69/664 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + E ++++E ++D + L G+T K + + + +++A N+ Sbjct: 2 NKLLENINSLEQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A + PS D S++ R+ Sbjct: 61 RAE--------------IYLDSINGIIENKAYLFPSLDINFYNIKSIDNRKLSQRMEVLT 106 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +V+ ++ A+ D + K + + IID + L L Y N Sbjct: 107 KLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +G F RG +ID +P D +R+ELFD+EV+ + LFD + + + I I P T Sbjct: 167 ENKGDFAKRGSIIDFWPVSYD-NPVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + ++ I E+ + E N+ +L + + + E + S I+ Sbjct: 226 ELIYSKDDYDKVIKNINREIMSLDNDSKEINRQ----KLIDKYKQITAFIEESMFVSNID 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + + DY+P GL+ D+ I Y +E Sbjct: 282 LVNPYRKDDY-----SSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEV 336 Query: 368 LPS--ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 S E S L+KS + IE Sbjct: 337 FKSFEHARILIDDIYEQIDKFRIINLTS------ILKKSKLF--NPRKIIEIK---TIES 385 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD + + A +++VL+ ++ A L + E V + Sbjct: 386 ENFNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLIDAYLEKDF---------TQVSK 436 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + I + + + G + ++ + G R R Sbjct: 437 VGIGESFE--KIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARK----------K 484 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + D I S Y I + K + I G + Sbjct: 485 KSKNKTSSRDIINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKL- 543 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + + + K+ L Q A+ + +I D L +L Sbjct: 544 --------FVPVDQMNLISKYIGSRGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVEL 595 Query: 666 RELF 669 Sbjct: 596 YAKR 599 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 59/453 (13%), Positives = 133/453 (29%), Gaps = 35/453 (7%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ + + + P + + I+ A Sbjct: 617 FENSFPYEETYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQV 676 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + ++ + + PG + L A + + Sbjct: 677 AFLVPTTILANQHYETIKRRFDKFPVNVQVISRFN------PGSKNKLIIKDLKAGKVDL 730 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + G + + + + + + +SATP Sbjct: 731 IIGTHRLLSKDVGYKNLGLLIIDEE--------QRFGVKHKEKLKELKSSLDVLTLSATP 782 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L+ S + D + + V + ++ I + N +V Sbjct: 783 IPRTLQMSLSGIRDLSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNR 842 Query: 456 KRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E L +L E +H I + + + + GE D+L+ ++ G+D+ Sbjct: 843 VNDIEKLYNHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDIS 902 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I D+D G + L Q GR R + Y T + I E +R Sbjct: 903 NVNTIIIYDSDMMGLGQ----LYQLKGRIGRGNR-SSYAYFTYRTGKILSEISE---KRL 954 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + + G G + D+ G +++ + + D+ K LQ Sbjct: 955 KSIRDFSDFG---SGYKIAMKDLELRGAGNLLGESQSG-------HVEAIGYDLYVKFLQ 1004 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + + + G ++ + ++ + Sbjct: 1005 EAVEKASGKEVEIKDKSDVYIDIKVDGYIPNFY 1037 >UniRef50_B8J3P1 DEAD/DEAH box helicase domain protein n=3 Tax=Desulfovibrio RepID=B8J3P1_DESDA Length = 562 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 56/442 (12%), Positives = 107/442 (24%), Gaps = 54/442 (12%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 D T R + P +S + +E + + + Sbjct: 47 EDMPEDMRTACARAGWQGLMPVQSLALPYLLE--------GRDIMVQSRTGSGKTGCYLL 98 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + L L E L + T Sbjct: 99 PMLPRLSAD--------LKAPQALVLAPTRELAVQVEREAAVLFEGT------------- 137 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLV 362 G D L L+V + + R+ Sbjct: 138 ------GIVTVAVYGGVGYKKQMDALRNGAQLIVGTPGRVLDHLLRRTLDLGDLRELVFD 191 Query: 363 EYGFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQ-------VVR 414 E L + + + T SAT + L+ SG + + Sbjct: 192 EADRMLSIGFYPDMKEIQRYLPRRRIHTCLFSATYPPHVLKLSGEFMAEPAMLSLSQKEV 251 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + + + L+ + ++ TK + L+ G Sbjct: 252 HVAEVQHLFCEVKPMDKDRALVRLL--ETENPASAIIFCNTKSNVHYVAGVLQGFGYNAD 309 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 L +D+ R ++ +R G+ LV ++ G+D+PE+S V + + S Sbjct: 310 ELSADLSQSRREAVLEKIRQGKLQYLVATDVAARGIDIPELSHVFLYEPP-----EDHES 364 Query: 535 LIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I GR R G I D + I + + + Sbjct: 365 YIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAK--HYKIGLIPLPLPTDEDVAHVAGTR 422 Query: 594 VDILALGQNIAKTKAKGRGKSR 615 + + G+ T + R Sbjct: 423 LTAILEGRFRKLTGLERVRVER 444 >UniRef50_Q7MC00 DNA and RNA helicase n=57 Tax=Gammaproteobacteria RepID=Q7MC00_VIBVY Length = 436 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 55/410 (13%), Positives = 107/410 (26%), Gaps = 28/410 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKVLLEN 277 E+ D + + + + L R + Sbjct: 35 ELIHALPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLRVNPEQKA 94 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + T+ ++E G + G L + ++V Sbjct: 95 -------LILVPTRELATQVSEAINQVG-QALGLNAVCLCGGVDKEQQLQALATNPHILV 146 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + L E L + QT SAT Sbjct: 147 ATTGRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQTAMFSATFS 206 Query: 398 NYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + K+ + + + + ++ L+ I++ + L Sbjct: 207 DELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQK--NAWTQAL 264 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V K A+ L + L + G LH D ER E + + G+ VL+ +LL G+ Sbjct: 265 VFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLARGI 324 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 + ++ +V + + + +GR AR G A+ AI Sbjct: 325 HIEQLPVVINFELPMH-----AETYVHRVGRTARAGEQGVALSLVCHGEMDALSAIRHLT 379 Query: 570 RRREKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 +R Q + + + D A + K K Sbjct: 380 QRELPVQDLEGFPVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAK 429 >UniRef50_Q9V3C0 ATP-dependent RNA helicase abstrakt n=10 Tax=Eukaryota RepID=DDX41_DROME Length = 619 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 62/455 (13%), Positives = 118/455 (25%), Gaps = 36/455 (7%) Query: 142 VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL--QYARNDQAFQRGTFRVRGEV 199 I K ++ ++ A+ L L + + + Sbjct: 129 AKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGI 188 Query: 200 IDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++ A+ +++ V + F + + + Sbjct: 189 LNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPF 248 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ-----FDLEMMNELGYCSGIENYSRFL 313 E L L Q ++ Q + G Sbjct: 249 ERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISR 308 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P L D L L + ++ + + M + Sbjct: 309 GVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMID-----------------MGFE 351 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVA 429 F QT+ SAT + +V V G + + Sbjct: 352 EDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYV 411 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q ++ + VL+ K+ + + EYL G +H D ER + Sbjct: 412 KQEAKVVYLLDCLQKTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAV 471 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG 548 R+G+ DVLV ++ +GLD P V V D + + IGR R+ G Sbjct: 472 DAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMP-----DDIENYVHRIGRTGRSNTKG 526 Query: 549 KAILYGDK-ITPSMAKAIGETERRREKQQKYNEEH 582 A +K S+ + +++ + Sbjct: 527 LATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDE 561 >UniRef50_B0TQ71 DEAD/DEAH box helicase domain protein n=31 Tax=Gammaproteobacteria RepID=B0TQ71_SHEHH Length = 437 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 57/417 (13%), Positives = 113/417 (27%), Gaps = 40/417 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 A++ E + FT+ + Q+ + Sbjct: 45 YQQPTAIQAEAIP-AILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRAS 103 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++ N G Sbjct: 104 VLVLAPTRELAVQV-----------NTNVSQYAV--------NTDVSSIVIYGGVSIDAQ 144 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L A ++V + + E L + + Sbjct: 145 ATKLAAGVDVIVATPGRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLP 204 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQ 441 QT+ SAT + E S + + + IE A + + Sbjct: 205 AKRQTLLFSATFSSAIFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCH 264 Query: 442 RAAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++VLV + K+ A+ + + + G + H D+ R +++ D + G+ Sbjct: 265 LINKSAWQQVLVFSRKKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKA 324 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ E+ +V + + IGR R N GKAI + Sbjct: 325 LVATDVAARGLDIVELKVVVNYEIPFV-----AEDYVHRIGRTGRAGNTGKAITLYSEDD 379 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + +R +G + + + + +K + R K R Sbjct: 380 ALLLEEVESVIDKRLP--------QQWLEGFEPDLTKLEPVTRKNSKAAQRQRAKKR 428 >UniRef50_D2EED4 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EED4_9EURY Length = 435 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 54/440 (12%), Positives = 120/440 (27%), Gaps = 29/440 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E + L V V + +E N Sbjct: 10 EILTALHEMKFEEPTEVQKQAIPLELEGKDVVVK----SKTGSGKTAAFVIPILNSIEKN 65 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + +T + L++ + G + +++ Sbjct: 66 ERQAAMIITPTRELALQVTEVVREIGRHMQ--LKAVTIYGGASINYQIREIRNGANIIIG 123 Query: 339 ESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + D R L E L + QT++ SAT Sbjct: 124 TPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMFFSATIP 183 Query: 398 NYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + + + + + LL+ + + E+ + Sbjct: 184 EEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNE--KKPEKAI 241 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T+R AE + ++ G + +H + R + + G ++L+ N+ GL Sbjct: 242 IFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAARGL 300 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ VS + DA+ ++ + +GR+AR +GKA + I Sbjct: 301 DIDNVSDIINFDAET-----DPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIENYA 355 Query: 570 RRREKQQKYN------EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + +++ + + + ++ L + +G R N Sbjct: 356 KVKLSYLEFDLSTYRTKMNEFYKENGKQEFETALRRSNFSSNRNFRGNNPHRREFGRSNN 415 Query: 624 PMDMSPKALQQKIHELEGLM 643 S + H Sbjct: 416 GGHYSKFKRDRFKHNYSKED 435 >UniRef50_C6WM51 DEAD/DEAH box helicase domain protein n=83 Tax=Actinobacteria (class) RepID=C6WM51_ACTMD Length = 609 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 114/406 (28%), Gaps = 27/406 (6%) Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL--------FDEEVERLSLFDPLTGQ 233 D + E D P E++ ++ E +E V L Sbjct: 18 THVDPVELEHSEAGLPETDDSRPLEANA-PVQPEAPTFTELGVREEIVRALGEAGIERAF 76 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + + L + ++ + + T+ Sbjct: 77 AIQELTLPLALAGEDVIGQARTGTGKTLGFGIPL---LQRVITPGDGTPQALVVVPTREL 133 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYR 352 + + R L G P L +VV + Sbjct: 134 CLQVTHDLTDASKHMDVRVL-AIYGGRPYEPQIAALRKGVDVVVGTPGRLLDLAEQRHLV 192 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + R L E L + QT+ SAT + + + Sbjct: 193 LGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTMLFSATMPGPIITLARTFLNQPT 252 Query: 413 VR-----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEY 465 G + E D + + + +R ++ T TKR A+ + + Sbjct: 253 HVRAEENDAGAVHERTEQFIYRAHALDKVELLARVLQARDRGLSMIFTRTKRTAQKVADD 312 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 + E G V +H D+ R + +R R G+ DVLV ++ G+D+ V+ V Sbjct: 313 MAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVATDVAARGIDVEGVTHVVNYQCP- 371 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER 570 E++ + IGR R G A+ D + I + Sbjct: 372 ----EDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQMISDALN 413 >UniRef50_C5DU64 ZYRO0C14234p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DU64_ZYGRO Length = 494 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 60/413 (14%), Positives = 120/413 (29%), Gaps = 30/413 (7%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E +E + + + + A Sbjct: 77 LNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGK----TAAFAIPILN 132 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L +K + T+ + E G R + G L Sbjct: 133 RLWEDKQPYYACVLAPTRELAQQTKETFDSLGALMGVRS-TCIVGGMNMMDQARELMRKP 191 Query: 334 LLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-LAPQTI 390 +++ + + + + R + E L K + T Sbjct: 192 HIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTY 251 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRA 443 SAT + + + + V ++ V P + L+ + + Sbjct: 252 LFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENI 311 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V++ T TK AE L+ LH D++ +R + + G +LV Sbjct: 312 --GKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVAT 369 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+P V +V D +S I +GR AR GK+I + + Sbjct: 370 DVAARGLDIPSVDIVINYDIPV-----DSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 424 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 I E ++ ++ ++E + + D + + R K + Sbjct: 425 LRIEEVLGKKLPKENCDKE-------VVISLRDSVDKANGEVIMELNRRNKEK 470 >UniRef50_B2AUP6 Predicted CDS Pa_1_19830 n=5 Tax=Sordariomycetes RepID=B2AUP6_PODAN Length = 604 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 48/431 (11%), Positives = 113/431 (26%), Gaps = 27/431 (6%) Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRF 241 R D T + +++ + ++ + ++ + + Sbjct: 133 RVDPIASFETAGLHPAMLNNVKLAGYETPTPIQRYCLPAIKMGYDVVAVAQTGSGKTAAY 192 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 I + +++ + + + + +++ E Sbjct: 193 LIPILNQLMGKAKKLAATRPNPAAFREGVDQAVRAE---PLVVIVCPSRELAVQVFTEAR 249 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG--GMYRGDRARKE 359 G P L +++ I + + R R Sbjct: 250 KFCYRTMLRP--CVIYGGGPSSEQRAQLQKGCDVLIASPGRLIDFMDDTRLLTLRRVRYM 307 Query: 360 TLVEYGFRLPSALDNRPLKFEE-------FEALAPQTIYVSATPGNYELEKSGGDVVD-Q 411 L E L + + + SAT + + + + Sbjct: 308 VLDEADEMLHDDWKGDFDTIMSGGGELLPIQRGNVRYMLFSATFPKQFRDLAKNHLAETH 367 Query: 412 VVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V G + ++ + L+ + R ++ +KR A++L + Sbjct: 368 VRLRVGRAGSTHRNIKQVVYETAPFNKKSALIDLLESL--PPTRTIIFVNSKRTADELDD 425 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L +H+D ER +R R G +L+ + G+D+ V V D Sbjct: 426 FLYNLKFPCTSMHADRTQKEREAALRGFRSGLAPILITTGVTARGIDVRNVMHVINYDLP 485 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + IGR R G A + + +A + T ++ Sbjct: 486 SMDYGG-IEEYTHRIGRTGRIGHRGMASSFFTERDEPIASVLTRTLLETGQEIPDFLAGY 544 Query: 584 ITPQGLNKKVV 594 I + + Sbjct: 545 IPEDVAHLRFE 555 >UniRef50_Q8I416 ATP-dependent RNA Helicase, putative n=4 Tax=Plasmodium RepID=Q8I416_PLAF7 Length = 1490 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 69/450 (15%), Positives = 131/450 (29%), Gaps = 31/450 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELA--ARRKVLLENN 278 L + + + + I TI + E + + L NN Sbjct: 735 LQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNN 794 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 LT + +++ NE N + G L ++V Sbjct: 795 DGPISIILTPTRELSIQVKNEAKIYCKAVN--IEILAVYGGSNIARQLKVLKKGVEILVG 852 Query: 339 ESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 I + + +R L E L +++ QT +SA Sbjct: 853 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISA 912 Query: 395 TPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T NY + + + G + +E+ + +V LL + + Sbjct: 913 TFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIKYG- 971 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 VL+ + A+ L L ++ + LH D +R + + E VL+ +++ Sbjct: 972 LVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMA 1031 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ + LV I IGR R+ N G A + + A I Sbjct: 1032 RGIDIKNIILVINYQCP-----DHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIY 1086 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDI-----LALGQNIAKTKAKGRGKSRPIVE-P 620 + + + + + I G+N K P + Sbjct: 1087 NLLKNNIYYLNKTIDIPQDLENMIIEYTKINSINEKQKGKNKNLGYKGKGYKFTPDEKSR 1146 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + ++ K L E +Q L Sbjct: 1147 HQIDIALAKKELGLTQENDENEKLQVDDEL 1176 >UniRef50_D2KCE8 CNB00610 n=1 Tax=Cryptococcus heveanensis RepID=D2KCE8_9TREE Length = 974 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 59/394 (14%), Positives = 112/394 (28%), Gaps = 42/394 (10%) Query: 214 VELFDEEVERL--SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 + + D+ ++ L F T S+IP P + L R Sbjct: 34 LNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDILGMARTGSGKTLAYLIPLLQRI 93 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY-----------------SRFLS 314 + L + +++ + + S + Sbjct: 94 GSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRGKGKGKEKTSDRDGKVESLRWA 153 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALD 373 GE T FD + + +V+ + M + E D Sbjct: 154 LIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMRLDLRHLQVVVYDEADRLFEMGFD 213 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVR 426 + + Q + SAT + E + +V+ ++ I Sbjct: 214 VQLREILSRLPPTRQNLLFSATLPSSVAEFAKAGLVNPLLIRLDSEHKISPDLDLRFFSV 273 Query: 427 PVATQVDDLLSEIRQRAAIN---------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + LL ++ + + +V TK + + E L+ G R +++ Sbjct: 274 KPIEKDAALLVLLKDVIKVPLSSGDNSHSPQAIVFVSTKHHVDYINELLKTAGFRSSHIY 333 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 S +D V R + + R DVLV ++ GLD+P + V D R + Sbjct: 334 SSLDQVARHQQLHHFRNRLTDVLVVTDVAARGLDIPVMDHVVNYDFP-----SGPRVFVH 388 Query: 538 TIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 +GR AR G A + + Sbjct: 389 RVGRTARAGRKGNAWSLVTRDDWPYLFDLQTFLG 422 >UniRef50_C1EDS5 DEAD/DEAH box helicase n=5 Tax=Eukaryota RepID=C1EDS5_9CHLO Length = 675 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 122/443 (27%), Gaps = 39/443 (8%) Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAEL--QYARNDQAFQRGTFRVRGEVIDIFP--AES 207 + K H+ ++ + + + + +ID + Sbjct: 190 ETGWKAPAHIRKLTEEERDDVRNKWHIIVEGVDIPPPIKTFREMKFPKPIIDELTRKGIA 249 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ + + F + + R+ E L Sbjct: 250 RPTPIQIQGLP-VILSGRDIIGIAFTGSGKSLTFVLPMIMAAMMEEHRMPLEGGEGPVGL 308 Query: 268 AARRKVLLENN-----KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL-SGRGPGEP 321 L + + Q M+ G S ++ Sbjct: 309 ILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIGGVDSREQSDIVRNAGVHMVTAT 368 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D L + + ++ + + M ++ Sbjct: 369 PGRLKDLLHKKRMNLDICKYLCMDEADRMVDLG-----------------FEDDIRDIYS 411 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLS 437 F QT+ SAT + + +V+ +V G +I+ Q ++ Sbjct: 412 FFKSQRQTLLFSATMPEKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQEAKIVY 471 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + VL+ K +D+ EYL G +H ER I + + Sbjct: 472 LLECLQKTAPPVLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAISEFKAQRK 531 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 DVLV ++ +GLD P++ V D + + IGR R G A + +K Sbjct: 532 DVLVATDVAGKGLDFPDIQHVINYDMP-----EEIENYVHRIGRTGRCGKTGIATTFINK 586 Query: 557 ITPS-MAKAIGETERRREKQQKY 578 + + R +++ Sbjct: 587 NQSETILLDLKHLLREAKQRIPP 609 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 98/679 (14%), Positives = 198/679 (29%), Gaps = 69/679 (10%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF + + + + L + + G+T + ++ I + + P Sbjct: 1 MILPF--VRDLLADLEHTASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPV 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++L + A ++ ++ ++ + +P+ D ++ S + ++ Sbjct: 59 VLLVADNKAADAMHLALRA-------GCELTGAIAAERVLKLPAHDVLPFENMSPHPEVQ 111 Query: 121 QMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R + + +V+A V A L Y + L G ID +L LA + Sbjct: 112 EQRATTLWKIATGDAAIVIAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASV 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + D G + RG ++D++ E+D +R+E F +E+E + FDP + + S + Sbjct: 172 GYEQVDVVEMPGQYTRRGGILDVYSPEADR-PVRMEFFGDEIETMRKFDPESQRSQSPLD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + E L A L + + EM+ Sbjct: 231 EARLLPL------------TETPVTERLLAAVHARLSGARFETNDE----GEMVAEMVAA 274 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G TL D P +L V+E + Q+ + + Sbjct: 275 GGVSVFP---GWEFFAGVAGAN-KTLLDLFPR-CVLFVEEPGMIKNQVERWWN------K 323 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + L + E L Q + + + D Sbjct: 324 VEQRHDRSSIGTLIRPEDIYLRPELLEAQRKSHPGLDIDQLG--AVDVLEDDETLGEIAF 381 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 +R + + +I+ R+L+ + E L L E+ R Sbjct: 382 SSRPTLR-FHGSIPAFVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRL--GS 438 Query: 480 IDTVERMEIIRDLRL---GEFD---VLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 E + D G+ +L + G+ +P+ +LV D Sbjct: 439 RVMHTGSETMYDEASHLGGDLRTPIILRA--PIATGVSLPDANLVVFGANDLNDEADV-- 494 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 AR K+ +Y I G + Sbjct: 495 --------TARPAARKSKTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEF 546 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + + + ++ P +H L + + Sbjct: 547 MILEFAEEAKLYVPLTRLDLIQKYRSTESGP--------APVLHRLGTQQWAKTKARVKK 598 Query: 654 EAAQIRDQLHQLRELFIAA 672 + D+L +L AA Sbjct: 599 AMQDMADELLKLYAQRKAA 617 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 61/442 (13%), Positives = 134/442 (30%), Gaps = 36/442 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + E F++ + D L+ + P + + ++ Sbjct: 621 AYSADNEFQRE-FEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGDVGYGKTEVAMR 679 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + Q + + + + + R + Sbjct: 680 AAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFRT------AKEQKL 733 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + + A + ++ +H + + + + R + + Sbjct: 734 IVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEE--------QRFGVRHKERLKQLR 785 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRA 443 + +SATP L S + D V T D + VA + L+ + Sbjct: 786 AQLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVEL 845 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++ ++ ++E R+ H + E +++ E+DVLV Sbjct: 846 ERGGQIYFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLV 905 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ GLD+P + + I AD+ G L Q GR R+ Sbjct: 906 ATSIIENGLDIPLANTILINRADRHGLSE----LYQLRGRVGRSNRRAYAYLMIPPE--- 958 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + E RRR K + G G +D+ G + + Sbjct: 959 -QELTEIARRRLAALKEFSDLG---AGFKIAALDLELRGAGNMLGGEQSG-------HIE 1007 Query: 622 NVPMDMSPKALQQKIHELEGLM 643 V ++ L++ +++++G Sbjct: 1008 AVGFELYTTMLEEAVNKMKGQE 1029 >UniRef50_Q9LU46 DEAD-box ATP-dependent RNA helicase 35 n=61 Tax=Eukaryota RepID=RH35_ARATH Length = 591 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 106/386 (27%), Gaps = 34/386 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++V+ + + F + + + A E L Sbjct: 168 QPTPIQVQGLP-VILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGL 226 Query: 268 AARRKVLLENN-----KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L + + ++ G + P Sbjct: 227 IVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATP 286 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D L + + ++T+ + + ++ + + Sbjct: 287 GRLKDMLAKKKMSLDACRYLTLDEADRLVDLG-----------------FEDDIREVFDH 329 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSE 438 QT+ SAT + +V V G +I+ Q ++ Sbjct: 330 FKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYL 389 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + VL+ K +D+ EYL G +H D +R I + G+ D Sbjct: 390 LECLQKTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKD 449 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 VLV ++ +GLD P++ V D + + IGR R G A + +K Sbjct: 450 VLVATDVASKGLDFPDIQHVINYDMP-----AEIENYVHRIGRTGRCGKTGIATTFINKN 504 Query: 558 TPS-MAKAIGETERRREKQQKYNEEH 582 + + +++ Sbjct: 505 QSETTLLDLKHLLQEAKQRIPPVLAE 530 >UniRef50_D2RII4 DEAD/DEAH box helicase domain protein n=2 Tax=Acidaminococcus RepID=D2RII4_ACIFE Length = 417 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 58/423 (13%), Positives = 117/423 (27%), Gaps = 24/423 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++++ + VE+L V + + + Sbjct: 7 QLKVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQ----TGVGKTLSFVIPLF 62 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 ++ K + + T+ + + R L+ G + Sbjct: 63 DKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVS-GGRDFEEEKRKIGHR 121 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + + + L E L QT+ Sbjct: 122 AQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 181 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + +V + I + D L S IR+ Sbjct: 182 CSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRY-- 239 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +LV +K A +L+++L G V LH D+ +R +++ + R + +LV + Sbjct: 240 NPFLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD+ ++ V D + IGR R + G AI + + Sbjct: 300 IAARGLDVEGITQVVNYDIPH-----DPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQ 354 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + + G T + K V K+ + E Sbjct: 355 NLEKKLDITL---ERQNLAGETVRRTVKPVRPKKKRVPKRGKSAVGPNKRGTKYAEASRK 411 Query: 624 PMD 626 Sbjct: 412 QKR 414 >UniRef50_A9UPZ2 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UPZ2_MONBE Length = 591 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 57/409 (13%), Positives = 114/409 (27%), Gaps = 36/409 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ F +E + F + + Sbjct: 19 YTKLFEIQSRTFTPILEGKDILGKAR-TGEGKTLSFALPIIELLLKEGRNGRG---RAPR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E + G + + P L Sbjct: 75 ALCMAPTRELAHQVGKEFADIGPS---LASTCVYGGAPYMPQESAIRRGLDVIIGTPGRL 131 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L L + D ++ + + M + Sbjct: 132 KDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEI-------------QKMTIAQSGG 178 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQVDDLL 436 PQ I SAT ++ L + + V T +D + P + + Sbjct: 179 KPQMILFSATMPDFILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIA 238 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 ++ + + R ++ T TK+ A +L + + V+ LH DI +R ++ R G+ Sbjct: 239 DVVQMYSGAHGRTIIFTQTKKDANELALE-TDLRQEVQVLHGDIPQKQREMSLQAFRDGK 297 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 LV ++ GLD+PEV LV + + S I GR R G I + Sbjct: 298 VRCLVATDVAARGLDIPEVDLVVQCEPP-----KDVESYIHRSGRTGRAGRTGTCICFYK 352 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + ++ + + + A+ ++ Sbjct: 353 PNQEDAMRYVERRAGISFRRIGAPQPEDVIKASARDAFRSLEAINDSVL 401 >UniRef50_D2QS74 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QS74_9SPHI Length = 475 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 61/444 (13%), Positives = 125/444 (28%), Gaps = 26/444 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + EL + + ++ + + + L Sbjct: 8 QFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAY---LLPILM 64 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + T+ + +N+ G R L G P T + L Sbjct: 65 KVKYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHL-ALYGGLGPKTQIETLRNG 123 Query: 333 GLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + G R L E + + E Q + Sbjct: 124 VDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNLL 183 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT G S + + + +I P ++L + + Sbjct: 184 FSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLDYLMR-QE 242 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGE---RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +RV++ TK A+++ ++L ++R +H++ R+ + + G VLV Sbjct: 243 DFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVLV 302 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+ EVS V D + IGR R G+AI + K Sbjct: 303 STDVAARGIDVAEVSHVINFDLPLI-----YEDYVHRIGRTGRANRTGEAITFLTKAEEY 357 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I + +Q G+ + + + + K Sbjct: 358 HVQKIERIIKATIPRQPLPA--GVVVAETPFEEEQAMLREIDE--QRRKEDPTFLGAFHE 413 Query: 621 DNVPMDMSPKALQQKIHELEGLMM 644 + + + +L G Sbjct: 414 KKITNMAPGRERDKAQAKLSGAKK 437 >UniRef50_A4RW46 Predicted protein n=4 Tax=Viridiplantae RepID=A4RW46_OSTLU Length = 654 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 68/473 (14%), Positives = 131/473 (27%), Gaps = 36/473 (7%) Query: 204 PAESDDIALRVELFDEE-----VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 P + L ++ F R FD L T+ V Sbjct: 75 PEPEEPNPLALDNFALSEPVKATLRKKGFDALFAIQAETLEIALSG--KDVVGRARTGCG 132 Query: 259 AMEEIKEELA--------ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + + L + ++ + ++ Sbjct: 133 KTLAFVLPIVEEMAKISPMPANGRRVQGRRPMCVVLAPTRELAKQVFADF--DWIGNSFG 190 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 G P L +V+ + D+ + L E L Sbjct: 191 FKSVCVYGGTPYREQEMGLRGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLN 250 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRP-TGLLDPI----I 423 + + QT+ SAT + + + + D G + Sbjct: 251 MGFVDDVELILKSSG-DVQTLLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAV 309 Query: 424 EV----RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHS 478 + + +VD + IR +A RV+V TKR +L + L++ + + LH Sbjct: 310 QHMLLPCQWSDRVDLVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHG 369 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ +R ++ R +F VLV ++ GLD+ V LV + + + I Sbjct: 370 DVSQGQREVVLAGFREDKFQVLVATDVAARGLDITGVELVIQCEPP-----KDAETYIHR 424 Query: 539 IGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 GR R G ++ + I + + + + I Sbjct: 425 SGRTGRAGATGISVTLCTPRSEWAVPNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIR 484 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + AK + D+ + L I +L G ++L Sbjct: 485 KVHKGAAKLFMDVARDLLEGEDSDSEEGRDPVEVLAMAIAKLAGHGELRQRSL 537 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 105/664 (15%), Positives = 215/664 (32%), Gaps = 74/664 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + I++++ GL+D + + +T K + L + + N Sbjct: 2 NKLIEQLINVDQIKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 + + ++ + P DT S+++ RL Sbjct: 61 RSEKFLQDINQI---------------SAKAKLYPDLDTNFYNIKSIDDKKINQRLECLI 105 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ + + V + +AI D + K + + IID + L+ L Y D Sbjct: 106 SLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F RG +IDI+P +D +R+ELFD+EV+ + +FD T + + I I P Sbjct: 166 EERGDFAKRGSIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPAN 224 Query: 248 HYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + ++ I ++ + +Q ++ Q +L Sbjct: 225 ELLYDSDDYKKVIKAISNDIDKKEVTNTKDQKLVDKYKQIISFLDQKMYVANKDLINAYR 284 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENYS F DYLPA + + D+ + +E G Sbjct: 285 TENYSSF-------------IDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENG 331 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 S + E ++ ++ ++I + S ++D Sbjct: 332 EVFGSFANYLLDSSEIYKNISEKSIINFTSILKRTKLFSPRKIIDLKTIEAEN------- 384 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +++ + A +++V V +K E+L + +H + Sbjct: 385 --FNKDIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF--------- 433 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E D + +++ EG + +V L + G S++ Sbjct: 434 EENSTDF--DKTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKK------------ 479 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 N K + + I S + Y I + K + I G + Sbjct: 480 NNRKKVSSKNIINYSDLEIGDYVVHENNGIGIYKGLTKIERNDVEKDFILIEYRGNDKL- 538 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V + + + K+ L L Q ++ + +I D L +L Sbjct: 539 --------YIPVDQMNLVSKYIGNRGEKPKLSALGSLQWQKSKQRAKKAVDEIADDLVKL 590 Query: 666 RELF 669 Sbjct: 591 YAKR 594 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 61/463 (13%), Positives = 134/463 (28%), Gaps = 36/463 (7%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D +VE F+ F L + P + + ++ Sbjct: 601 AFSKDTTWQVE-FENSFPYDETFSQLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALR 659 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + Q +E + + + + Sbjct: 660 AAFKAIMDGYQVAFLVPTTILANQHYHTMVERFKDFPITCAMLSRFNTKAKD------DK 713 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + + + +V +H + + + +G + Sbjct: 714 ILKDIKSGKIDIVVGTHRLLSDDVKFNKLGLLIIDEEQRFGVKHKEKFKKFKASI----- 768 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRA 443 + +SATP L+ S + D + + V ++ I + Sbjct: 769 ---DVLTLSATPIPRTLQMSLSGIRDLSTLDDPPEERLPVNTYVLEFDSGIIRDAILKEI 825 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 N +V E L +++ +H + + I+ D G+ D+L+ Sbjct: 826 NRNGQVYFVYNRVNDIEKLFLKIKDLVPEASIEIVHGQMSPRQIENIMMDFIDGKIDILL 885 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+ V+ + I D+D G + L Q GR R + Y + + Sbjct: 886 ATTIIETGMDIKNVNTIVIYDSDLMGLSQ----LYQLKGRIGRGYR-SSYAYFTYRSGKI 940 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 I +R K + + G G + D+ G +++ + Sbjct: 941 LTEI---GEKRLKSIRDFSDFG---SGYKIAMKDLELRGAGNLLGESQSG-------HVE 987 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 V D+ K LQ+ + + G ++ + +I + Sbjct: 988 AVGYDLYVKFLQEAVEKASGKEVKIKLENQTFIDIKIDAYIPN 1030 >UniRef50_A3FQ30 Putative uncharacterized protein n=2 Tax=Cryptosporidium RepID=A3FQ30_CRYPV Length = 862 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 104/367 (28%), Gaps = 16/367 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + +E + + + +I V + R Sbjct: 11 FSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSH 70 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + L+ + L+ + + N + G F+ L + + Sbjct: 71 SQIVGIRGVILSPTRELALQTYRVVRKLACKTN--LVVCALTGGSSLDRQFESLSGNPDI 128 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV I + L E L ++ K E Q + VSA Sbjct: 129 VVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVSA 188 Query: 395 TPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T S + + V L ++ LL +R +E Sbjct: 189 TMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSHE 248 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 R ++ TK + + + LE + V Y++ ++D R + R + L+ ++ Sbjct: 249 RAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIAA 308 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIG 566 G+D+P + V D S + + GR AR +G+A + Sbjct: 309 RGVDIPMIKYVINFDFPL-----SPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDLC 363 Query: 567 ETERRRE 573 + Sbjct: 364 LFLGLKM 370 >UniRef50_Q01PH0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01PH0_SOLUE Length = 422 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 54/416 (12%), Positives = 115/416 (27%), Gaps = 35/416 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + F + T + Sbjct: 22 FTEPTPIQSLAIEPAL-AGKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQPG------VR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++ + T + G + P L Sbjct: 75 ALILTPTRELALQINEALLQIARGTG-IRAAVAVGGLNERSQLRDIRGGANIVVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +D++ + + + + + M + Sbjct: 134 YDFMSRGLINLTTVRMLILDESDRMLD-----------------MGFLPTIKRIIAAMPA 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIRQ 441 QT+ SAT + + V + V G + + + Q Sbjct: 177 ERQTLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQDRKFGLLEMM 236 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 LV TK A+ L + L + G + +H D +R++ ++ + G + VLV Sbjct: 237 LREEQGSFLVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVLV 296 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+ + +S V D + I +GR R G A + + S Sbjct: 297 ATDVAARGIHVEGISHVVNFDLP-----QVPEDFIHRVGRTGRAGAKGTASTFATRSERS 351 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 I T + K+++ + P+ + V+ + + +GR KS Sbjct: 352 EIGRIERTLSVKLKRREVSASIVAAPRKESSAVIVLPHAKRAEHSRPEQGRNKSFR 407 >UniRef50_B2S409 ATP-dependent RNA helicase n=3 Tax=Treponema RepID=B2S409_TREPS Length = 649 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 103/386 (26%), Gaps = 19/386 (4%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI---VQAMEEIKEELAARRKVLLENN 278 + L+ + + I I + I + L + Sbjct: 56 QSLAAVRLKGFRCPTPIQAAAIP---RLLAGDANIIAKARTGTGKTAAFGLPLIQELGSP 112 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + T+ + I+ + G L G ++V Sbjct: 113 CEHPGALVLVPTRELAAQVASELSSLRIQ-KIPRIHTVYGGVSIAEQLRNLEQGGEIIVG 171 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I I R L E L + + SAT Sbjct: 172 TTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMP 231 Query: 398 NYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRAA--INERVLVT 452 L + + V P+IE + D + + + N LV Sbjct: 232 RQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVF 291 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK A+ + + L+E V LH DI +R +I+ R +LV ++ G+D+ Sbjct: 292 CQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDI 351 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 ++ V + +GR R + G AI + + + + Sbjct: 352 EGITHVVNYSIPH-----DSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNG 406 Query: 572 REKQQKYNEEHGITPQGLNKKVVDIL 597 K I Q + + Sbjct: 407 ELKASTVPLVEHILTQKEGRIFSSLK 432 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 116/661 (17%), Positives = 211/661 (31%), Gaps = 77/661 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ +++ E L L G+ +G+ A + DL R ++ P + A Sbjct: 2 YEALLKSTAEYQKIAESLHT-PGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++K AV P D + E RLS A+ Sbjct: 61 THFADDLKALGLTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGAL 105 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V A+ D +L+ L L GM+ ++ A++ RL Y R Q Sbjct: 106 AGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDG 165 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG+++DI+ RVE +D+E++ L+ FD LT + ++ + + P Sbjct: 166 PGQFSVRGDIVDIYAP-DMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREV 224 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E A + ++ + + + + T+ DL ++ ++ Y Sbjct: 225 LFGS----------TAETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKY 274 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P TL D+L + + V+DE L+E G P Sbjct: 275 YGIRYPQ-----PATLLDHLDS-PIFVLDEVGGIRDAQKATEYRRGEELTGLLEEGVLCP 328 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + A Q+ + E D+++ Sbjct: 329 GLDVLYQTMDDLAIAAQKQSTLLCENFLRGMNEFKLKDLINVEAFAAPN---------WG 379 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L ++ A V + + T + A LT L + G V + R Sbjct: 380 GDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVS-----MSRDVRPA-- 432 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 G VL L G P I + G + + R N Sbjct: 433 ----KGIVQVL--PGHLTAGCTFPFAHAAVISSR-RHGLDEEAAAENKR-----RKKNKN 480 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 A+ + S K + Y + QG K + I G ++ Sbjct: 481 ALS-----SLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDVL----- 530 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 P+ + D + +P ++ K+ +L G Q + + A ++ +L +L Sbjct: 531 ----YVPVTQLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYAR 586 Query: 669 F 669 Sbjct: 587 R 587 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 65/463 (14%), Positives = 132/463 (28%), Gaps = 39/463 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ E D L YP + + + ++ Sbjct: 605 FETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQC 664 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q L M G+ + R + L + + + Sbjct: 665 ALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRT------AKQQKETLRGLQSGSVDI 718 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + + + + + + + +SATP Sbjct: 719 VVGTHRLLSKDVRFHDLGLVIIDEE--------QRFGVKHKEKLKENFIGVDMLTLSATP 770 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 L + + D ++ +E + L +++ A +V Sbjct: 771 IPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHNR 830 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E ++ + G RV H + E + + L GE D+LV L+ G+D+ Sbjct: 831 VDNIESTAAHVSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDVR 890 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DAD+ G + L Q GR R+ + + K + + ++R Sbjct: 891 NCNTLIIEDADRMGLAQ----LYQIRGRVGRSGRKAYAYFTFRRD----KTLTDIAQKRL 942 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + G G + D+ G ++ + V D+ K L Sbjct: 943 SAIREFTAFG---SGFRIAMRDLQIRGAGSLLGHSQHG-------HMEAVGYDLYVKMLG 992 Query: 634 QKIHELEGLMMQHAQNL----EFEEAAQIRDQLHQLRELFIAA 672 Q I +G +Q ++ +A + A Sbjct: 993 QAIARAKGEPVQRDKSECLIDLRVDAYIPEKYIADGPGRIEAY 1035 >UniRef50_A6QC93 ATP-independent RNA helicase DbpA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QC93_SULNB Length = 453 Score = 241 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 55/406 (13%), Positives = 109/406 (26%), Gaps = 59/406 (14%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 A+L L L + + Q+ I P + + Sbjct: 11 PEALLGTLETLGFTTMTEIQQK----------SIGP----------------ILKGKDIL 44 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + F I + + + + L +E +++ Sbjct: 45 AQSKTGSGKTLAFGIPA---VMGTDVKSNKPQT-----IVITPTRELAEQVAMELRKIAA 96 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G + S P + D+L L + + + + Sbjct: 97 YKANLKILTLYGGVPLRAQADSLAKGAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEAD 156 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M +K QT+ SAT + + Sbjct: 157 RML-----------------DMGFYEEIIKIGSNMPKQKQTLLFSATFPPKIESLAKALL 199 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYL 466 D + + +++ + + D + + +L+ TK L + L Sbjct: 200 KDPLTIKVDTVQEAMKINELVYETPDKFKTLNALIGSYKPDSLLIFCNTKAEVISLADRL 259 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 ++ G V +H D+D ER E + ++V ++ GLD+ ++SLV D Sbjct: 260 QQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVATDVASRGLDIKDISLVINYDLPF- 318 Query: 527 GFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERR 571 + IGR R G AI I ++ Sbjct: 319 ----DKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITSQAKQ 360 >UniRef50_B4RRN6 ATP-dependent RNA helicase DbpA n=3 Tax=Alteromonadales RepID=B4RRN6_ALTMD Length = 459 Score = 241 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 53/420 (12%), Positives = 125/420 (29%), Gaps = 28/420 (6%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 Q +E N + + T+ E + + + + + ++ Sbjct: 46 GQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVT 105 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALD 373 G+P L ++V + + + L E L + Sbjct: 106 TLCGGQPMGPQIQSLKHSPHIIVGTPGRVMDHVEKRRIDLRNVKLRVLDEADRMLDMGFE 165 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RP 427 + QT+ SAT + + + V + + Sbjct: 166 DDLRIIFGQTPKQVQTLLFSATFTEQIERVAKQYLHNPVTCKVESQENKPAITQLGYNVL 225 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 T+ L + + + + +V K D+ + L E G + L D++ +R Sbjct: 226 PHTRTQALKAVLTEY--QPKNAIVFCNRKTQVNDVVDELIEDGFSAKGLQGDMEQHQRTS 283 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 ++ VLV ++ GLD+ +V+ V + I IGR AR Sbjct: 284 VLMQFASDSLQVLVATDVAARGLDIDDVACVINY-----TVSEEPETHIHRIGRTARAGA 338 Query: 547 NGKAILYGDKITPSMAKAIGETERRRE-----KQQKYNEEHGITPQ--------GLNKKV 593 G AI + + I + + ++++ P+ G +K+ Sbjct: 339 KGMAITLVSEEEEHFLRKIEVLQESDIPLKGAQSLRFHKNKITQPEFTCISLSAGKKEKL 398 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 +G G + V+ + + +++++ + + ++ + + Sbjct: 399 RPGDLVGALTKDAGIPGDDLGKIKVQNSMSFVAVKTRSVKKAMTQFREGKIKGKRIRARK 458 >UniRef50_A2SJY2 Putative ATP-dependent RNA helicase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY2_METPP Length = 516 Score = 241 bits (614), Expect = 9e-62, Method: Composition-based stats. Identities = 50/402 (12%), Positives = 101/402 (25%), Gaps = 51/402 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + +++ + ++ + F + + Q Sbjct: 94 FTAPTSVQEQAIPAALKGGDWM-VSSQTGSGKTAAFLLPVLHRLL-NAGAAEQTRVATPR 151 Query: 266 ELAARRKVLLENNKLLEEQ------------RLTQR-----TQFDLEMMNELGYCSGIEN 308 + L + Q + G G + Sbjct: 152 AVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAARGLRIATVVGGMPFGKQL 211 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + P L D + + + + + M Sbjct: 212 FDLR-GAQLVVATPGRLLDLHSRGQIRLDATQVLVVDEADRMLDL--------------- 255 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 + A QT+ SAT + + + + Sbjct: 256 --GFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQ 313 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + LL + A ++ + +V T+ E + E L++ G LH + Sbjct: 314 TLHWADNMGHKQALLEHWLRDAEVD-QAVVFASTQVDTEAIAEALQQQGHSAVALHGAMP 372 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R ++++R G VLV ++ GLD+P +S V G + IGR Sbjct: 373 QAVRNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVIN-----FGLPMKAEDYVHRIGR 427 Query: 542 AARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 R G AI + +AI R+ + Sbjct: 428 TGRAGRSGTAITIAEHRERGKIRAIEAFTRQPIEASVIVGLE 469 >UniRef50_UPI00006CF9CE DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF9CE Length = 1357 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 72/555 (12%), Positives = 165/555 (29%), Gaps = 66/555 (11%) Query: 152 DLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 +Y + + + V G + + I L R + + + FP + + Sbjct: 674 KIYRENLGEIQVKGQEVPRP-IKSWLQSGLSDRILEVLI-----EKKKYDKPFPIQCQSL 727 Query: 211 ALRV---ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + + ++ D E+ D + + + H R + L Sbjct: 728 PVIMSGRDMIDFLREQAKSKDSIAETGSGKTLAYLLPMIRHVSAQRPLQEG---DGPIGL 784 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L LE + + ++++ + G + P L D Sbjct: 785 ILVPTRELATQIYLEAKPFLKAYKYEI-VAVFGGTGIKGQLSELKRGCEIVVATPGRLID 843 Query: 328 YL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + + V I + M+ + + K Sbjct: 844 VLTTSNGKITNLKRITMVVIDEADRMFDL-----------------GFEPQIAKILATTR 886 Query: 385 LAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT+ SAT + + V G + +IE+R +T++ LL Sbjct: 887 PDKQTVLFSATFPKNVENLAKKLMRHKPVEVVVGARGQACTNITQLIEIRDESTRLFRLL 946 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +V++ + + L + L LH+ +D +R+ + D R G Sbjct: 947 ELLGIYTEQG-QVIIFVDKQIEVDFLYQELRSRYYIPTILHAGVDAEDRVNNLLDFRKGI 1005 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 + +L+ +L GLD+ V LV I IGR R G A+ + Sbjct: 1006 YKILIATSLSSRGLDVKNVVLVVNYKCPNH-----IEDYIHRIGRTGRAGNKGTAVTFIG 1060 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA------LGQNIAKTKAK 609 + + + +R +++ K+ + G+ + + Sbjct: 1061 PEEDKYSLDLIKALKRSDQKVPEELLRMGEEFKKKVKMGEAKIYNNANMQGKGFNFDEEE 1120 Query: 610 GRGKSR-PIVEPDNVPMDMSPKALQQKIHEL-EGLMMQHAQNLE---------FEEAAQI 658 ++ + + + M ++ + + + A++ + + Sbjct: 1121 RDKMNQMKYEQKKFLALQMGLDIEERDDDFVFKKAQEESAKDKKDKDELTFQQKLHIVKT 1180 Query: 659 RDQLHQLRELFIAAS 673 +D+ +RE + + Sbjct: 1181 QDEYKDIREELFSKA 1195 >UniRef50_UPI000180B7AC PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=1 Tax=Ciona intestinalis RepID=UPI000180B7AC Length = 672 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 116/403 (28%), Gaps = 40/403 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++++ F+ + F I + + + L Sbjct: 114 FPIQIQSFNHVYDG-KDVVAQARTGTGKTLSFAIPLVEKLIM---NRCKDYGRPPKVLVM 169 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + Q ++Q + G + S P + D++ Sbjct: 170 APTRELAIQVRKDFQDISQG---LSSVCIYGGTPYFQQERSMRGGVDIVVGTPGRIMDHV 226 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + HV + ++ M A K + PQT Sbjct: 227 QKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAYTEEREGP------------PQT 274 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQR 442 + SAT + S + + +E + Q D I Sbjct: 275 LLFSATCPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNV 334 Query: 443 AA----INERVLVTTLTKRMAEDL--TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + R ++ T TK+ A +L E L++ + + LH DI+ +R ++ R G Sbjct: 335 VQMYSGQHGRAMIFTDTKKDANELVVCEALQQQ--KAQVLHGDIEQRQREITLKAYRDGT 392 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 LV N+ GLD+PE+ LV S I GR R G + + Sbjct: 393 VRCLVATNVAARGLDIPEIDLVIQTSPP-----SDIDSYIHRSGRTGRAGRTGVCVCFYK 447 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 M K + + K + I +N + + Sbjct: 448 PREDMMIKKVERVAGIKFKMVGPPQPKDIVKASVNDAIASLDL 490 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 108/369 (29%), Gaps = 21/369 (5%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + L V + + + + + K Sbjct: 11 PALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLPIIEKIKP---- 66 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + + T+ + ++ L G+ L L++ Sbjct: 67 QAAVTQALVITPTRELAIQIAKVAQSLSAAADISSL-VIFGGQDIERQKQKLRRHPQLII 125 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + + K L E + E A Q + SAT Sbjct: 126 GTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAADRQLMLFSATM 185 Query: 397 GNYELEKSGGDVVDQ-------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + S + +D +I T++D L I Q Sbjct: 186 PDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEIINQE--QPYLA 243 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V TK+ A +T L G V LH D+ V+R +++ R E +L ++ G Sbjct: 244 MVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQILCATDIAARG 303 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGET 568 LD+ V+ V D S I IGR R GKAI + + + + I Sbjct: 304 LDIEGVTHVFNYDIPH-----DAESYIHRIGRTGRAGERGKAITFVNARQYDLLRRIEGG 358 Query: 569 ERRREKQQK 577 + R ++Q+ Sbjct: 359 IKDRIRKQR 367 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 112/693 (16%), Positives = 208/693 (30%), Gaps = 85/693 (12%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 P S P Q A R V+ + + IA + P + Sbjct: 1 MSPSSFPSPLLPRAGQLRAFWRA--------------PVSPTALAWHIACAAQAHRGPLL 46 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 ++ + A Q+ +++ P P +T S + +I Sbjct: 47 LVTHDNHSAHQIEVDLQTLLAHC----------SGLPVIGFPDWETLPYDQFSPDPNIVS 96 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 RL+ + +VV V + P + VG + A +RL Sbjct: 97 QRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAG 156 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y Q G F VRG ++D++P +D + LR+EL DEE++ + FDP + + ++ + Sbjct: 157 YRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLDEEIDSIRTFDPESQRSLNQVDV 215 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P L L E L R + + Sbjct: 216 IHMLPGREVPLD-----------PAVLERVLVRLRERFDLDT------RRSALYQDLKAG 258 Query: 301 GYCSGIENYSRFL--SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 SGIE Y SGRG TLFDYL AD L++ + R Sbjct: 259 LAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTA-PG-VSNAADAFWGQTMQRY 316 Query: 359 ETL---VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 E +E P L P E P+ SA + ++K+ + Sbjct: 317 EQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAH--IDKAEVLDEQPLPVA 374 Query: 416 TGLL--------------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 T + ++ + + LL + E + A + Sbjct: 375 TKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLATADLQPEVLPDFRSFFLSAAE 434 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD-VLVGINLLREGLDMPEVSLVAI 520 +++ E + + + D + + G + + L +G + + + Sbjct: 435 VSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFAITVAPLEDGFSLSVPPIAVL 494 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + + ++ R R +AI+ +Y + Sbjct: 495 TERQLFPERVNP---VRRSRRVGR--EPEAII----RDLGELSEGAPIVHEDHGVGRYRK 545 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G+ + V+I AKG P+ + + +H L Sbjct: 546 LITMNVSGMPGEFVEIEY---------AKGDRLYVPVAQLHLISRYSGASPETAPLHSLG 596 Query: 641 GLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 G A+ E+ + +L +++ A + Sbjct: 597 GEQWSKAKRKAAEKVRDVAAELLEIQARRQARA 629 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 51/437 (11%), Positives = 120/437 (27%), Gaps = 44/437 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ AA + Q + + + Sbjct: 671 PMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPIRV 730 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + + + + + V+ +H + + Sbjct: 731 EVLSRFKST------KEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVDEE--- 781 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R + + + ++ATP L + + D + T L+ + Sbjct: 782 -----QRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAV 836 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + + LL ++ A ++ + L + H + Sbjct: 837 QTFITPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMP 896 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D + F+VL+ ++ G+D+P + + I AD+ G + L Q GR Sbjct: 897 ERELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ----LHQLRGR 952 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + SM +R + +E G G D+ G Sbjct: 953 VGRSHHRAYAYLVVPDRRSMTAD----AEKRLEAIASMDELG---AGFTLATHDLEIRGA 1005 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ---- 657 + + + V + + L++ + ++ + + E A+ Sbjct: 1006 GELLGEDQSG-------QMAEVGFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLH 1058 Query: 658 -----IRDQLHQLRELF 669 D L + Sbjct: 1059 IPTLIPEDYLPDVHTRL 1075 >UniRef50_C0QD57 RecQ2 n=3 Tax=Desulfobacterales RepID=C0QD57_DESAH Length = 537 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 48/375 (12%), Positives = 102/375 (27%), Gaps = 36/375 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + ++ E+ + F + + + + L Sbjct: 120 MPVQAEVLPHTLMG-KDATAKAQTGTGKSAAFLVTIIARLMKNP-TRGKREKGTPRALII 177 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + LT T + ++ P L D++ Sbjct: 178 EPTRELVLQIEKDAKALTLYTPLRTVSVFGGMDYKRQQDQLASAHVDIIAATPGRLMDFM 237 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--LAP 387 + + + I + + L Sbjct: 238 RQKLINLGKIEILVIDEADRL-----------------LDMGFIPDMRNIIYNTPHKKER 280 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 QT++ SAT L + VD V ++ + + + L + I Sbjct: 281 QTLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQKFPLLYNLIS 340 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 RV++ + + + L + L ++ +R+ + D R G+ VL Sbjct: 341 GEKLE--RVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFRNGKVRVL 398 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GL + VS V D + I IGR R G ++ + D+++ Sbjct: 399 VATDVAARGLHIEGVSHVINYDLP-----QDPEHYIHRIGRTGRAGAEGISVSFADEMSS 453 Query: 560 SMAKAIGETERRREK 574 I + + Sbjct: 454 FQIPDIEAVLGNKLE 468 >UniRef50_UPI0000E48294 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48294 Length = 657 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 59/392 (15%), Positives = 114/392 (29%), Gaps = 36/392 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + F ++ F + V ++ Q LA Sbjct: 126 FPIQAQTFKP-IDDGFDVIAQARTGTGKTLSFVLP----LVEKWQQFPQKSGRQPIILAL 180 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + G + + P + DY+ Sbjct: 181 APTRELAKQISEYFEAIGPH---LSTTCIYGGTSYWPQESAIRRGLDVVVGTPGRILDYI 237 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + L + HV + ++ M A + E PQT Sbjct: 238 RKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGA-----------AYKTEEAPNNPQT 286 Query: 390 IYVSATPGNYELEKSGGDVV-DQVVRP-TGL--------LDPIIEVRPVATQVDDLLSEI 439 + SAT + + + + D G + + + + I Sbjct: 287 LLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVISDVI 346 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++ R +V TKR A +L + + + +H DI +R ++ R G+F Sbjct: 347 KVYGGLDGRCMVFCETKRDANELAMS-SDVKQETQVMHGDIPQTQREVTLKGFREGKFQC 405 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+PEV LV + R S I GR R G + + + Sbjct: 406 LVTTDVAARGLDIPEVDLVIQCNPP-----RDVDSYIHRSGRTGRAGRNGVCVCFYKRQE 460 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + + + K+ + I + Sbjct: 461 ERDLQKVEYKAGIKFKRVSAPQPSDIIKSSVK 492 >UniRef50_D0WTV5 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Vibrio alginolyticus 40B RepID=D0WTV5_VIBAL Length = 445 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 108/410 (26%), Gaps = 28/410 (6%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLEN 277 E+ D + + + + L + + Sbjct: 44 ELIHALPKDFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQKA 103 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + T+ ++E G + G L + ++V Sbjct: 104 -------LILVPTRELAMQVSEAINQVG-QVLELNAVCLCGGVDKEQQQQALATNPHILV 155 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + L E L + QT SAT Sbjct: 156 ATTGRLVDLANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFS 215 Query: 398 NYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + K+ + + + + ++ L+ I++ + L Sbjct: 216 DELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQK--NAWTKAL 273 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V K A+ L + L + G LH + ER E + + G+ VL+ +LL G+ Sbjct: 274 VFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGI 333 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 + ++ +V + + + +GR AR G A+ AI Sbjct: 334 HIEQLPVVINFELPMY-----AETYVHRVGRTARAGEQGVAMSLVCHGEMDALSAIRHLT 388 Query: 570 RRREKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 +R Q + + + D A + AK K Sbjct: 389 QRALPVQDLAGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSK 438 >UniRef50_C7PAU3 DEAD/DEAH box helicase domain protein n=7 Tax=Bacteria RepID=C7PAU3_CHIPD Length = 414 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 57/430 (13%), Positives = 128/430 (29%), Gaps = 58/430 (13%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 I R L EL + R F+ ++ ++V + Sbjct: 10 EEIKRSLEELGFKRPTDI----QFKAIPSILK----------------GDDVLAI----- 44 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I R + L +RL + Sbjct: 45 -AQTGTGKTAAFAIPVLHKLQQYHPRKTKGEVRCV---VMVPTRELAVQISEVFERLAKY 100 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ ++ ++ G + P +FD + + + + + + Sbjct: 101 TKLNILGLH-GGVDQAPQLKKLAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADH 159 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M R + QT++ SAT + + V Sbjct: 160 MLDLGFIR-----------------DIRDVLKHLPRRHQTLFFSATIDEDIKDLAYSVVN 202 Query: 410 DQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTE 464 + + DP+ ++ +DD + + ++LV TK AE + Sbjct: 203 NPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERLVKEFPENKILVFVRTKVRAERVAA 262 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E G + +H + R++++ + + G+ +L+ ++ G+D+P+V V D Sbjct: 263 AMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLLITTDVNARGIDIPDVEYVVNYDLP 322 Query: 525 KEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + + +GR R G+A+ + + AI + + K ++ Sbjct: 323 -----DVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDAIQQYLGKEITVMKIDKNDY 377 Query: 584 ITPQGLNKKV 593 ++ + Sbjct: 378 RETISFSEDI 387 >UniRef50_A7SE71 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SE71_NEMVE Length = 411 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 114/405 (28%), Gaps = 66/405 (16%) Query: 205 AESDDIALRVELFDEE--------VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 E +D +E F + F T + ++ + E Sbjct: 30 IEGEDCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSG--RDIIGLAETG 87 Query: 257 VQAMEEIKEELAARRKVLLEN---NKLLEEQRLTQRTQFDLEMM---------------- 297 L LT + ++ Sbjct: 88 SGKTLAYSLPL-CMLLRTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNP 146 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G + + P L D L + +++ + + Sbjct: 147 VCGGVPVSTQTIALREGADVVVATPGRLLDLCKRGALCLDKITYLVMDEADR-------- 198 Query: 358 KETLVEYGFRLPSALDNRPLKFEEF---EALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 L ++ + K + A QT+ SAT + V++ + Sbjct: 199 ---------MLGMGMEEQLRKIVGLATGTSRARQTLLWSATLPESLERLARSAVLNPITI 249 Query: 415 PTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G + + + LL +R V+V T + + + +TE L+ Sbjct: 250 QVGPGGLIAPSVQQNVVFLYHYQKPQKLLETLRT--TPYPPVIVFTSSIQNVDYVTELLK 307 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + LHS+ R ++++ R G+ D+LV ++ GLD PEV+ V D Sbjct: 308 QEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLP--- 364 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 + I GR R +G A + +A+ + E R Sbjct: 365 --DTIECYIHRCGRTGRIGHHGIATSFLTL-DCKIAEELKEMLER 406 >UniRef50_D0N876 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N876_PHYIN Length = 681 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 50/398 (12%), Positives = 109/398 (27%), Gaps = 29/398 (7%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ FD+ V+ L + F + + + + +A Sbjct: 130 FPIQAMTFDKIVDGKDLMGRAR-TGMGKTLAFALPVIELLLQDKRPRARGRAPRVVCMA- 187 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L E + + G +N + + D++ Sbjct: 188 -PTRELAKQVATEFELTGPS---LSTVCIYGGASYQSQNNAFRSGVDILVGTTGRVIDHI 243 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + + + + + M V + + QT Sbjct: 244 DRGNLRLHNCEFLILDEADTMLEMGFREDVQKV----------FTAMDQVKNESTGKRQT 293 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQVDDLLSEIR 440 + SAT + + + + + I + L + + Sbjct: 294 LLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLG 353 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A + R ++ TK+ +L + E + LH DI +R ++ R G +L Sbjct: 354 VYAKKDSRTIIFAETKKDCNELAVH-PEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLL 412 Query: 501 VGINLLREGLDMPEVSLVAILDADK-EGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 + ++ GLDM V LV + + + + + GR R G I Sbjct: 413 IATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQ 471 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I + + ++ + K + +I Sbjct: 472 RDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEI 509 >UniRef50_Q9NR30 Nucleolar RNA helicase 2 n=57 Tax=Euteleostomi RepID=DDX21_HUMAN Length = 783 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 61/447 (13%), Positives = 124/447 (27%), Gaps = 42/447 (9%) Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE--LFDEEVERLSLFDPLTGQI- 234 + + + + +I + + F L G+ Sbjct: 151 KNGFPHPEPDCNPSEAAS----EESNSEIEQEIPVEQKEGAFSNFPISEETIKLLKGRGV 206 Query: 235 -----VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN---NKLLEEQRL 286 + +Y + L + L++ + + L Sbjct: 207 TFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVL 266 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + ++ + + ++ G P F+ + ++V Sbjct: 267 APTRELANQVSKDFSDITKK----LSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDH 322 Query: 347 IGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-----PQTIYVSATPGNYE 400 I + + L E L ++ + PQT+ SAT ++ Sbjct: 323 IQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWV 382 Query: 401 LEKSGGDVVD-QVVRP-TGLLDPIIEVRPVA-------TQVDDLL-SEIRQRAAINERVL 450 + + G + TQ ++ IR + R + Sbjct: 383 FNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTI 442 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + TK+ A++L++ + + LH DI +R ++ R G F VLV N+ GL Sbjct: 443 IFCETKKEAQELSQN-SAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGL 501 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+PEV LV + S I GR R G I + + + Sbjct: 502 DIPEVDLVIQSSPP-----KDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKA 556 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDI 596 + K+ I + + Sbjct: 557 GIKFKRIGVPSATEIIKASSKDAIRLL 583 >UniRef50_B8FMI0 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMI0_DESAA Length = 567 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 50/443 (11%), Positives = 109/443 (24%), Gaps = 64/443 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + R + L + + ++ + +E F Sbjct: 10 DELARAVESLGFEKPT-------------------------PIQEKAIPYLIEGERDFVG 44 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 L + + R + + L + + + Sbjct: 45 LAQTGTGKTGAYGLPLIQSIDLSIPR--------PQAIVICPTRELCLQIAGDLRDFAKY 96 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + + + P L D + + + V + + Sbjct: 97 MEDIRVAAVYGGADIVKQIRTVKGGAQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADE 156 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M +T SAT + Sbjct: 157 MLN-----------------MGFQEDINAILSSLPDERRTWLFSATMPKGVAAIAAKYQT 199 Query: 410 DQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTE 464 + V G + I + + +++ + LV T++ +++ E Sbjct: 200 NPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFGLVFCRTRKDTQEIAE 259 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G LH D+ +R +++ R VL ++ GLD+ ++S V Sbjct: 260 ALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARGLDVDDISHVIHY--- 316 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN---E 580 + GR AR GK+I K + + + + Sbjct: 317 --VLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKFSFQLDSLPQGRD 374 Query: 581 EHGITPQGLNKKVVDILALGQNI 603 GL +K+ + +I Sbjct: 375 ICQKQVAGLAEKLASVSVRENDI 397 >UniRef50_C7LPU2 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPU2_DESBD Length = 741 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 58/448 (12%), Positives = 119/448 (26%), Gaps = 51/448 (11%) Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 ++ D R ++ P + I + + Sbjct: 25 FSMADLPQTLQAAATRLNWAELMPVQVQTIPYML--------GGQDVMVQSQTGSGKTGA 76 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 F + + + L L + + L Sbjct: 77 FLLPILDRI--------ETGLGAPQALVLVPTRELAVQVTRDAEEL-------------- 114 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKE 359 G E + LS G L L++ + + G DR + Sbjct: 115 ----GREAGIKPLSIYGGVGYKG-QIQGLEDGAQLIIGTPGRILDHLLKGNLNLDRLKIL 169 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP---- 415 E L + + + Q+ SAT + + + D V Sbjct: 170 VFDEADRMLSMGFYPDMKQLQRYLPRGLQSAMFSATYPGHVKRLAQQFLKDPVFVSLSQS 229 Query: 416 ---TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + ++ P + L+ I ++ TK ++ L G Sbjct: 230 QVHVSDVLHVVYKVPAMQKSRILVKII--EQENPASAIIFCNTKADVHFVSTVLRRFGYD 287 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V + +D+ R E++ LRL + LV ++ G+D+ E+S V + Sbjct: 288 VGEISADLTQAAREEVLEKLRLNKLKFLVATDVAARGIDIHELSHVFQYQPP-----QDH 342 Query: 533 RSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + + GR R G AI + + + I + +Q + + + Sbjct: 343 EAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAKKFSIPMVEQPLPADEELETLISQR 402 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVE 619 V + A + + + + V Sbjct: 403 AVFLLEARLRKADNIQKERMQRFMRTVG 430 >UniRef50_A1SAL1 ATP-dependent RNA helicase rhlB n=142 Tax=Gammaproteobacteria RepID=RHLB_SHEAM Length = 439 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 56/420 (13%), Positives = 111/420 (26%), Gaps = 40/420 (9%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 L + ++A + P ++ + + +E Sbjct: 5 HLTQQKFADLPLCDEVKQALNENGFEHCTPIQALSLPVLLE--------KKDIAGQAQTG 56 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 F + H +T + L + L++ Sbjct: 57 TGKTLAFLVATFNHLLTTPV-PEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKH-SGLK 114 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + G + + DY+ + + V + + M+ Sbjct: 115 VGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDL- 173 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEA--LAPQTIYVSATPGNYELEKSGGDVVDQV 412 + SAT E + + D V Sbjct: 174 ----------------GFIKDIRFLFNRMPGAKERLNMLFSATLSMKVQELAYDHMNDPV 217 Query: 413 VRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE 467 + I+ ++D L + + + +V TK E+L LE Sbjct: 218 KVEIAPEEKTSRNIKEEIFYPSMEDKLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLE 277 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G RV L D+ +R++I+ E D+LV ++ GL + +VS V D Sbjct: 278 ADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLP--- 334 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + IGR R G ++ + + AI + + Y+ + I Sbjct: 335 --DDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIEDYIKHSIPVTSYDRDALIDI 392 >UniRef50_C7QE56 DEAD/DEAH box helicase domain protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QE56_CATAD Length = 795 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 60/407 (14%), Positives = 117/407 (28%), Gaps = 35/407 (8%) Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + T+ + E +G + + G L A LVV + Sbjct: 136 LVVVPTRELAVQVTEDLAAAGKVM-AARVQSVYGGRAYEPQIAALSAGVDLVVGTPGRLL 194 Query: 345 PQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 R L E L + QT+ SAT + Sbjct: 195 DLAKQGHLDLSGVRMLVLDEADEMLDLGFLPDVERIVTQVPKDRQTLLFSATMPGQVIAL 254 Query: 404 SGGDVVDQVVR----------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + I + + L ++ +V Sbjct: 255 ARQYMSRPTHIRAADPHDTGTTVANTTQWIYRAHALDKTEMLARMLQAEGR--GLTMVFC 312 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TKR A + E LE G +H D+ R + +R R G+ DVLV ++ G+D+ Sbjct: 313 RTKRTAAKVAEELESRGYAAAAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVE 372 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRR 572 V+ V +++ + IGR R +G A+ + D I +T Sbjct: 373 GVTHVVNFQCP-----EDDKTYLHRIGRTGRAGASGIAVTFVDWDEVPRWNLINKTLGLD 427 Query: 573 EKQQKY-------NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + + + P +++ +A + + G++ Sbjct: 428 FHEPRETYSTSEWFFKELGIPADAKGRLLKSEQTRAGLAAEEVEDLGETGRGAGARARAT 487 Query: 626 DMSPKALQQKIHELEGLMMQHAQN--------LEFEEAAQIRDQLHQ 664 + A + + E + + A+ + A+ D++ Sbjct: 488 TTTRTAERPARPKRERVRTRGARRGGDEMVGAEDALTASDAADEVLD 534 >UniRef50_Q240I5 DEAD/DEAH box helicase family protein n=2 Tax=Oligohymenophorea RepID=Q240I5_TETTH Length = 749 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 53/389 (13%), Positives = 116/389 (29%), Gaps = 24/389 (6%) Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 ++++ ++R L + F I T+ + + ++ Sbjct: 340 RSKYEKPTPIQMQTIPIGLQRKDLIGI-SQTGTGKTCAFLIPLITYLRSLPPMDEEIAKD 398 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L L E Q LT + ++ G G + + L Sbjct: 399 GPYALILIPTRELAPQIEKEFQNLTSNMR-MKSLVMVGGKDEGNQAFKLKLGCELLIGTV 457 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D L + L++ S V + + M + + + R ++ + + Sbjct: 458 GRIKDALEKNYLVLDQVSWVVLDEADKMIDLNFEQDVNFILDKIRTNMKSEDENMAVLQE 517 Query: 383 EALA------PQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVA 429 + T SAT + + G ++ I++ Sbjct: 518 QEAKVGEKIFRVTHLFSATMPPNLERLAKKYLRSFCYISIGEAGDAKKDIEQIVDFMSEG 577 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L + +++ K E L++ L+ G + H +R + Sbjct: 578 QKKSRLQKILETAKPP---IIIFANEKTAVEKLSKILDRWGWQNVIYHGGKTQQQREAAV 634 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + G++D+LV +L GL + V +V DA ++ + I GR R G Sbjct: 635 DGFKKGKYDILVATDLGARGLHVDGVKMVINFDAP-----KNIKDFIHRTGRTGRAGKRG 689 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQK 577 A + ++ + E + Sbjct: 690 IAYTFVTNHNEAIMYDLREFLFKNNFDIP 718 >UniRef50_Q5FNK0 ATP-dependent RNA helicase n=1 Tax=Gluconobacter oxydans RepID=Q5FNK0_GLUOX Length = 393 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 56/385 (14%), Positives = 110/385 (28%), Gaps = 40/385 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + +E + F + Sbjct: 40 HKRPSLIQTQAIPPLLEG-KDVLVGSQTGSGKTAAFVLPMLQKL------TEAGPAPGPR 92 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L R + G + S L Sbjct: 93 ALILEPTRELAAQTAAVCRQLG-RRLSLKTRVICGGTSREQQVQSVSDGVDIIVATHGRL 151 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + L++ +++ + + + D + T L ++P Sbjct: 152 LDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTA------LTPYFPDQP--------- 196 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 PQT++ SAT ++ + + V + + + + Sbjct: 197 -PQTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARL 255 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ R +V TK + L + L H RV LH D R + + R G Sbjct: 256 LKHFE---GRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIP 312 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV ++ GLD+P+V LV +D + + + IGR AR G A + Sbjct: 313 VLVTTDIASRGLDIPDVDLVINMDMP-----ETPEAYVHRIGRTARAGRKGVAFSLINID 367 Query: 558 TPSMAKAIGETERRREKQQKYNEEH 582 + + + + R + + Sbjct: 368 ERTFLRDVEKHIGYRVRIATEDSLD 392 >UniRef50_B7IA63 DEAD/DEAH box helicase n=17 Tax=Acinetobacter RepID=B7IA63_ACIB5 Length = 615 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 51/386 (13%), Positives = 104/386 (26%), Gaps = 31/386 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + +E + F + + Sbjct: 23 FTNPTPVQEQSIPAALEG-KDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF---------- 71 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + T+ + +++ ++ G P Sbjct: 72 ----VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQ 127 Query: 326 FDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + + + D+ + E L + A Sbjct: 128 IQQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAA 186 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + + + + LL+ Sbjct: 187 NRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLT 246 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + +V T+ + L E L E G V LH + R +R +R G Sbjct: 247 HWLADETLD-QAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRA 305 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+P +S V G + IGR R G+AI Sbjct: 306 KILVATDVAARGLDVPTISHVIN-----FGLPMKHEDYVHRIGRTGRAGRTGQAITLATY 360 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 +A+ + R + Sbjct: 361 RERGKIRALEDYLEARLNVSEIEGLE 386 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 88/664 (13%), Positives = 198/664 (29%), Gaps = 71/664 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L + + GV + ++ +P +V+ + A Sbjct: 4 LTKIYEDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L + + + PS + S++++ E R++ + Sbjct: 64 RNLTEYLNDIEENI--------------CEFFPSRELNFYNAKSLDDNAEDQRVNVLFKL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V + A+ K + +I+ + +L L+Y R D Sbjct: 110 LNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIES 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG ++DIFP S +R+ELFD+E++ + F+ T + + I + Sbjct: 170 KGQFAIRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSEL 228 Query: 250 VTPRERIVQAMEEIKEEL----AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + I++ L +N + ++L + + DL Sbjct: 229 IIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYIRSDL----------- 277 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 E +S + T+FDY D ++++++ + LVE G Sbjct: 278 -EYEIDLVSCFLTKKDYDTVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKG 336 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 L + + + + +T + + + I Sbjct: 337 EVLSKHEQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLKTLEAPNFNKNI-- 394 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 D L+ I+ + + +V L + +G ++ + Sbjct: 395 -------DSLVENIKSNSLRGFKQIVFAANVERKNMLKDLFLTNGIPT------LEAEDY 441 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ VL+ L G ++ + + I + G + R Sbjct: 442 NANIKS-----SQVLITQKNLPNGFEIKDPKYLIITYKEIFGREKQLRK----------- 485 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K D + S +Y I G+ K + I + Sbjct: 486 RKKKKSTGQDIVNYSDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLM 545 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + +++L G A+ + ++ D L +L Sbjct: 546 IPTDQMNLVQKYIG--------GGNVKKPSLNKLSGNDWAKAKQKAKKSVDEMADDLVEL 597 Query: 666 RELF 669 Sbjct: 598 YSKR 601 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 63/443 (14%), Positives = 131/443 (29%), Gaps = 35/443 (7%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ + + P + + I+ A Sbjct: 619 FEDSFPYEETDSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQV 678 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q E + +E SRF+S + + + + Sbjct: 679 AFLVPTTILAQQHFNTIKERFRDY--PIRVEMMSRFVSP----ARQKQIMKDVQRGLVDL 732 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + E R + + + +SATP Sbjct: 733 LVGTHRILSKNLKFKDLGLL---VIDE-----EQRFGVRHKEKLKSMRENVDVLTLSATP 784 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L+ + D + D V L+ I + ++ Sbjct: 785 IPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNR 844 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + L+E + H ++ E ++ D + G +D+L+ ++ GLD+ Sbjct: 845 IEDIDQMEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQ 904 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 V+ + I +ADK G + L Q GR R+ + + K++ E +R Sbjct: 905 NVNTMIIYNADKMGLSQ----LYQLKGRIGRSDRTSFAYFTYEGQ----KSLTEISEKRL 956 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K E G G + D+ G +++ + D+ K L+ Sbjct: 957 MAIKDFTEFG---SGFKIAMRDLELRGAGNLLGESQHG-------HIAKIGYDLYVKLLE 1006 Query: 634 QKIHELEGLMMQHAQNLEFEEAA 656 Q + E +G + +N E Sbjct: 1007 QAVREAKGETISENKNTVIIEIK 1029 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 103/678 (15%), Positives = 216/678 (31%), Gaps = 96/678 (14%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-IADLQRP 59 M + I L D + G++ K +A++ L P Sbjct: 1 MELLKNMADTLTEYKKSVAHI------LSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSP 54 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +V+ ++ AA+L ++ + A P+SD + + ++ Sbjct: 55 VLVITESEASAAKLTEDINTMCGDTAAYQ-------------FPASDLTLADTEAQSQEY 101 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 E R+ A L + ++++S A L D+ K + L G I + L Sbjct: 102 EYKRIETLSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVS 161 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R D +G F RG + DI+P SD +R+EL+ +E++ ++ FD T + + T+ Sbjct: 162 AGYTRCDMIEGKGQFSFRGSLADIYPVSSD-YPVRIELWGDEIDTVASFDIDTQRRIDTV 220 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 +I P + + ++ + E+ +K E K + + D+ + Sbjct: 221 KSVSITPCGETIFEEGVLSGTLQTLLEKTEKNKKKNDEAAKRI---------RRDIARLR 271 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + + Y + P ++FDY ++ T + Sbjct: 272 DGISVCCLNRYFPLCY-----KEPGSIFDYAST----LIVSESFTAAEAAKGAISAHLED 322 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV---RP 415 L+ L LD + E++ + K + + Sbjct: 323 LKLLTEDGVLCKGLDRYLMSKAEYQ--------------DTVKNKVRLYMDTFIRGGGID 368 Query: 416 TGLLDPI--IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + + I++ + + L E+ + ++ T + A+ L E L + G + Sbjct: 369 LSDILKVDSIQLSAWSGEYKMLFEELDNYSRNGYSCVIFGGTDKAAKILAEDLHDKGYKA 428 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 Y + + LG + V +L G + PE + + S Sbjct: 429 DY----------AKNPKKFYLG--RITVVEGILSAGFEYPEEKIAVLTRTSASSSKTSAP 476 Query: 534 SLIQTIGRAARNVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + G I D + E QK +T ++K Sbjct: 477 --------KKKFKKGAQIRSLSDISQGDLVVHGSYGIGVFEGVQK------LTADKVSKD 522 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLE 651 + I G ++ P+ + D + + ++++L + A+ Sbjct: 523 YIKIKYAGTDVL---------YVPVTQLDLISRYIGSGDADTVRLNKLGTDTWKKAKTKA 573 Query: 652 FEEAAQIRDQLHQLRELF 669 ++ +L +L Sbjct: 574 KAATQEMAKELIELYSRR 591 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 71/462 (15%), Positives = 128/462 (27%), Gaps = 38/462 (8%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + +F++ + D L P + + ++ Sbjct: 605 QQHIFEDHFSYVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGD 664 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q Q L+ M G+ +E SRF + + + L Sbjct: 665 GKQCAILVPTTVLAWQHYQTVLKRME--GFDIRVELLSRFRTA----KEQKIILKKLEEG 718 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L +V +H + + + + + + Sbjct: 719 ELDLVVGTHRLVQDDVKFKDLGLVIIDEE--------QRFGVNDKEKLKEAFTNVDVLTL 770 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLV 451 SATP L + + D V T D V ++ I + N +V Sbjct: 771 SATPIPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNGQVYY 830 Query: 452 TTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + H + E + + R L GE DVLV L+ G Sbjct: 831 VHNRIESIYSCAADIHSMVPEANIGIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETG 890 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+P + + I +AD G + L Q GR R +A Y K + E Sbjct: 891 VDVPNCNTLIIENADCMGLAQ----LHQLRGRVGRTNR-RAYAYFTFRRG---KVLSEIA 942 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 +R + G G + D+ G +++ +V DM Sbjct: 943 TKRLDAIREFTRFG---SGFRIAMKDLEIRGAGSVLGQSQSG-------HLASVGYDMYI 992 Query: 630 KALQQKIHELEGLMMQHAQN---LEFEEAAQIRDQLHQLREL 668 K L + I E +G + +A + + Sbjct: 993 KLLNEAILEQQGKAPEITPECLIDIRIDAFIPEKYISNQAQR 1034 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 98/661 (14%), Positives = 200/661 (30%), Gaps = 73/661 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + + L GV GSG + A + A +V+ P++ A E++ + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVV 139 P+ + Y P + K S + R++A +L RR ++V Sbjct: 62 LPKGK-----------RRVIYFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 V + + + ID+ ++ RL Y R + G + VRG Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F S +R+ELF + VE L F P+T + + I I P V Sbjct: 171 ILDVFSP-SATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDP----- 224 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 E+ R + + + + ++ + E G G+E Sbjct: 225 ---AELPEILGRLRKAGADAGVDPVVI-----RGHVDKIREEGRFPGMEGML-----SIV 271 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL--PSALDNRP 376 + DY+P L +++ + R + + P +L Sbjct: 272 YPELDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALAENRLSVTPESLYIEW 331 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + + + T E + + + + + L Sbjct: 332 SQVKSRLFEKKPVCFKRLTMDRRETDSAAFS------FDISDNTFLSSTLKGEGKTEALF 385 Query: 437 SEI----RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + + R + + ++ L L +G +L E + + Sbjct: 386 QPLADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKG-------FEEVENQ 438 Query: 493 RLGEFDV-LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + G + + L G PE + + + + G R G R + I Sbjct: 439 KPGIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFGAKRRRS-----AGGTKRAKSQF-I 492 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + + + R E + GI+ + D Sbjct: 493 TPEELKEGDIVVHLEHGLGRYEG-LVTLKLEGISGDFILISFRD--------------DD 537 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 P+ + V + + ++ G Q ++ +E ++ +L +L Sbjct: 538 RLYLPVDRMEMVEKYIGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLYAERRV 597 Query: 672 A 672 A Sbjct: 598 A 598 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 70/467 (14%), Positives = 136/467 (29%), Gaps = 42/467 (8%) Query: 213 RVELFDEEVERLSLF----DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 R + F + E F D L + + P V + I+ Sbjct: 605 RPDHFFNDFEASFPFEETPDQLKAIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFK 664 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q E Y +E+ SRF + + Sbjct: 665 AVTDGKQVAIVVPTTILAEQHVHTFRERF--GNYPITVESLSRFRT----KGEQAKIVKD 718 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L L VV +H + + + E + + + + Sbjct: 719 LEQGKLDVVIGTHRLLQKDIAFKSLGLL---VIDE-----EQRFGVKHKEALKKRRSSVD 770 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINE 447 + ++ATP L S + D + T +D V ++ D + + I++ Sbjct: 771 VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGG 830 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ + E L++ V H ++ + + E D+LV + Sbjct: 831 QIFFIHNNIKTIFKTAENLKKLVPEVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTI 890 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I AD G + Q GR R + Sbjct: 891 VESGLDIPSANTMIINRADMFGLAQI----YQLRGRIGRGEEQAYAYLFVPEEHR----L 942 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++R + + G G + D+ G A ++ V Sbjct: 943 TRDAQKRLAALMEHRDLG---SGFQIAMKDLQIRGAGSALGGSQSG-------HVAAVGY 992 Query: 626 DMSPKALQQKIHELEGLMM--QHAQNLEFEEAAQIRDQLHQ-LRELF 669 DM K L + + +L+G + + + I D+ Q + + Sbjct: 993 DMFLKLLDEAVADLKGQPLTDPLEPEINVTLSTFISDEYVQSIEQRL 1039 >UniRef50_Q12PC3 DEAD/DEAH box helicase-like protein n=84 Tax=Gammaproteobacteria RepID=Q12PC3_SHEDO Length = 468 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 62/474 (13%), Positives = 127/474 (26%), Gaps = 50/474 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + P + + + + + F + + Sbjct: 31 GITTPTPIQEQALPIAL--------TGKDLMASSKTGSGKTLAFLLPAMQRII----STK 78 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L + + L TQ+ + G + + Sbjct: 79 ALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSIL-GGENFNDQAKALSREPHF 137 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P + D+L L + + + + M A + + Sbjct: 138 IVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINA------------- 184 Query: 378 KFEEFEALAPQTIYVSATPG-NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVA 429 + QT+ SAT + E + + G + I + Sbjct: 185 ---AADHKRRQTLMFSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHL 241 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 LL + N+++++ T T+ E L L + G L +++ R +I+ Sbjct: 242 DHKQALLEHVLTN-ETNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIM 300 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG 548 G+ +LV ++ GLD+ VSLV D K + IGR R G Sbjct: 301 DQFARGQKQILVTTDVASRGLDLINVSLVINFDMPKF-----AEEYVHRIGRTGRAGAKG 355 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 A+ + R+ + + K D + + +AK + Sbjct: 356 DAVSLVGPKDWDSFIKVQAFLRKTFEFTVIDGLKAKFSGLKAKAKTDKVNSTKRVAKAAS 415 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 K + + + + +L E A I+ + Sbjct: 416 KAKSPHAKPAPKRDKRFSTGVDVGDAPMRR------KVKPSLIIETDASIQSDI 463 >UniRef50_Q1N6E2 ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1N6E2_9GAMM Length = 475 Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats. Identities = 41/372 (11%), Positives = 93/372 (25%), Gaps = 37/372 (9%) Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 ++ E + F I +T + + L Sbjct: 123 PIQAEALPYTL-AGRDIIGKAQTGTGKTAAFLITVLQKLLT--VKPEERFASEPRALILA 179 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L + L++ ++ + + P L DYL Sbjct: 180 PTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQLENEVVDVVVATPGRLLDYLQ 239 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA--PQ 388 + + + I + L + Q Sbjct: 240 QGIVYLDQVEMLVIDEADR-----------------MLDMGFIPDLKRIIRGTPEKSIRQ 282 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQ 441 T SAT + S + + + L+ + Sbjct: 283 TQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIEYL-- 340 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + ++ + DL + L + G + L ++ +RM+ + + + VLV Sbjct: 341 EKENTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGAVLV 400 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+ + ++ V + + IGR R +G AI + D+ Sbjct: 401 ATDVAGRGIHVDGITHVFNYNLP-----DDPEDYVHRIGRTGRAGESGTAITFIDEYEAY 455 Query: 561 MAKAIGETERRR 572 + ++ Sbjct: 456 GLMDLESYLGKK 467 >UniRef50_A6VVX6 DEAD/DEAH box helicase domain protein n=8 Tax=Proteobacteria RepID=A6VVX6_MARMS Length = 438 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 62/449 (13%), Positives = 125/449 (27%), Gaps = 26/449 (5%) Query: 233 QIVSTIPRFTIYPKTH---YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + I ++ P + + L + + + Sbjct: 4 TTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLLKINPRF----FGVQALVMCP 59 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + +++ + + G P L +VV + + Sbjct: 60 TRELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLMEHLRK 119 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + L E L + + E QT+ SAT G+ S Sbjct: 120 GTLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAISKEFQ 179 Query: 409 VDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLT 463 + L P IE V ++ D + + +V TK ++ + Sbjct: 180 STPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAESQVVA 239 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 ++L EH + +H D++ +R +++ VLV ++ G+D+ E+ LV D Sbjct: 240 DWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLVVNYDT 299 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 R IGR R G A+ + I R + E Sbjct: 300 -----TRDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIES---RFNITANFIELE 351 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 I P ++ G + + + Sbjct: 352 AIDPHYRLIPQKTTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYVSVD 411 Query: 643 MMQHAQNLEFE-EAAQIRDQLHQLRELFI 670 + A+ + E E +I+ +R + Sbjct: 412 N-EVAKTVVKEFENKKIKG--KNIRARIL 437 >UniRef50_B1H1W5 LOC100127243 protein (Fragment) n=3 Tax=Euteleostomi RepID=B1H1W5_XENLA Length = 638 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 67/425 (15%), Positives = 129/425 (30%), Gaps = 41/425 (9%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 +++++ + F + + ++ L Sbjct: 246 PTPIQMQMIPVGLM-ERDILASADTGSGKTAAFLLPAIIRCLEKKDS--------PAALI 296 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + + L + + G + + + + P L + Sbjct: 297 LTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHRLKQAVQIIIATPGRLLEI 356 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + D + + D + + + M + + L E + Q Sbjct: 357 INQDCVNLGDLKILIVDEADTMLK-----------------MGFQQQVLDILEHASHDHQ 399 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQ 441 TI VSAT + + D V G + I+ ++ L + Sbjct: 400 TILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQIVLWVEEPSKKKKLFEILND 459 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 VLV + A+ L++ + + G +HSD +ERM+I++ L GE+DV+ Sbjct: 460 SKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGLLQGEYDVV 519 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V +L GLD+ V LV D S + IGRA R G AI ++ Sbjct: 520 VSTGVLGRGLDLVNVKLVVNFDMP-----PSMDEYVHQIGRAGRLGHRGTAITLINRNNR 574 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 S+ + + + + Q KKV + + T + R Sbjct: 575 SLFWDLVKRVQPTGSLLPPQLLNSPYLQE-QKKVDERGRRDKEKVVTGDQILDLIRKHDR 633 Query: 620 PDNVP 624 + Sbjct: 634 RKSQK 638 >UniRef50_A0C369 Chromosome undetermined scaffold_146, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0C369_PARTE Length = 566 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 57/382 (14%), Positives = 109/382 (28%), Gaps = 26/382 (6%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ + + F + + ++ E L Sbjct: 139 KPTPIQMQGLPAVLMG-RDIIGVAPSGQGKTLVFLLPALLQCIEEEMKMPVIRGEGPFAL 197 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + + + G + Sbjct: 198 ILLPSHELAIL----------TYELAKQ---YCQKFQKKGFPAIHCLLGIGGMDMSSQLQ 244 Query: 328 YLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + +V+ + D R L E L + E Sbjct: 245 SIRNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGP 304 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQR 442 QT+ SAT E + +VD +V G I I+ Q + L + Sbjct: 305 RQTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEEKLHYLLDCL 364 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 V++ + + +D+ EYL G V LH +R + ++ G+ DVLV Sbjct: 365 KKTTPPVVIFSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVA 424 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPS 560 ++ +GLD P++ V D + S I IGR R G+A + + + S Sbjct: 425 TDVAAKGLDFPDIKHVINYDMP-----KDIESYIHRIGRTGRQGKTGRATTFVNRQQEES 479 Query: 561 MAKAIGETERRREKQQKYNEEH 582 + + +++ E Sbjct: 480 ILLDLKYLLVESKQKIPQFLEK 501 >UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF36_XENLA Length = 800 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 53/398 (13%), Positives = 112/398 (28%), Gaps = 34/398 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + F V F I Q + + Sbjct: 245 FPIQSKTF-HTVYSGKDVVVQARTGTGKTFSFGIPLVERL----SEDQQPLARGRAPRVI 299 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 E + + L T+ G + ++ P + D + Sbjct: 300 ILTPTRELAIQITNE-LRSMTKKLKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRIRDLV 358 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + HV + ++ M+ + + + P PQT Sbjct: 359 QNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDP------------EENPQT 406 Query: 390 IYVSATPGNYELEKSGGDVVD-QVVRP-TGLLDP----IIEVRPVATQVDDLLSEIRQRA 443 + SAT ++ + + G +E + + + Sbjct: 407 LLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIV 466 Query: 444 A----INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + ++ +K A +L+ + + LH D+ ER +++ R G F+V Sbjct: 467 QVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEV 526 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ N+ GLD+PEV LV + A + + + GR R G I + Sbjct: 527 LIATNVAARGLDIPEVDLVVLYSAP-----KEADAYVHRSGRTGRAGRTGVCISLYEPWE 581 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + + + K+ + + + Sbjct: 582 KHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKSL 619 >UniRef50_C2ME86 ATP-dependent RNA helicase, dead/deah box family n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2ME86_9PORP Length = 553 Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats. Identities = 54/415 (13%), Positives = 109/415 (26%), Gaps = 41/415 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ + ++ E+ L+ + + + Sbjct: 21 FSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPLLERII--------------- 65 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 LT + +++ ++L + + R + G Sbjct: 66 ---------QAKGSAPCGLILTPTRELAIQVQSDLVALAKYTS-VRQILALYGGASIEEQ 115 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L ++V I + + L E L + + Sbjct: 116 IRQLAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVP 175 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 + SAT E + + D G + + P + L Sbjct: 176 QQVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKR 235 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + I ++ T+ +++ E+L G LH D+ +R ++ R+ Sbjct: 236 VVDYYPNIYG--IIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNL 293 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+ +V+ V G S GR AR G +I Sbjct: 294 QLLVATDVAARGLDVDDVTHVLHY-----GLPADPDSYTHRSGRTARAGKTGLSIAICHL 348 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + I + R + I + L I N T+ Sbjct: 349 RDSKQIRIIEQHAGIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDEL 403 >UniRef50_B3PER7 ATP-dependent RNA helicase, DEAD box family n=12 Tax=Gammaproteobacteria RepID=B3PER7_CELJU Length = 477 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 45/379 (11%), Positives = 88/379 (23%), Gaps = 33/379 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + R F + L Sbjct: 53 TPVQEQAIPPA-RRGRDLLVTAQTGTGKTAAFGFPLLQQLLEKPR---ATQPGHTRALVL 108 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L Q+ G + P L +++ Sbjct: 109 APTRELVEQVADNLQQ-YAHFTSLTIAAVYGGVKHSSQANKLQAGLDVLVATPGRLLEHV 167 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + + + L K PQ Sbjct: 168 ELGNINLQQVEFLVLDEADR-----------------MLDMGFVGEISKLLNGMGKKPQI 210 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRA--A 444 ++ SAT + + + + +E + Sbjct: 211 LFFSATLTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTH 270 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V+V + T+ A+ L L+E +HS+ R +++ + G+ VLV Sbjct: 271 NWFQVMVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATE 330 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+ + V LD + +GR R G AI Sbjct: 331 VAARGLDIQGLDYVVNLDLPFF-----IEDYVHRVGRTGRAGSKGIAISLVSASDEPKVA 385 Query: 564 AIGETERRREKQQKYNEEH 582 I + + K+ K Sbjct: 386 LIEKAIGTKIKRVKIKGFE 404 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 103/670 (15%), Positives = 230/670 (34%), Gaps = 78/670 (11%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 DQ +++ ++G L G++G+ K+ +AN ++ +++ ++ A Sbjct: 3 IIEFFDQNWQLQKWQQGFSKRERTL-LTGLSGTAKSLVMANAYENVADKYIIVTDSQFHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +LY E+ E V F S D + A ++ RL A + Sbjct: 62 NELYDELSTLLGEEKVFQFF-------------SDDNIYAEFALASKDRIAYRLEALNFL 108 Query: 131 LERRD-VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 L+ R +V A+ P+ +L+ L LT G D ++ L++ Y + + Sbjct: 109 LDERATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVM 168 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG+++DI+P +++ +R+E F +EV+ + FD + + ++++ R IYP + Sbjct: 169 TPGEFSMRGDIVDIYPLDAE-NPVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASD 227 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR--LTQRTQFDLEMMNELGYCSGI 306 ++ + + + E + + E+ R M E+ + Sbjct: 228 FILTDNEFDKGAKSLTEM--TNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQN 285 Query: 307 ENY--SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Y + +L +Y P + + +D+ ++ M + Sbjct: 286 HYYHKDLRKFAEYFYDKKTSLLNYFPKNVQIFIDD----FQKVNEMNNKLEMELADFILS 341 Query: 365 GFRLPSALDNR--PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 + + + L + S + + Sbjct: 342 EKAMERGFEGQTYLLDTMAKVRNYKPATFFSNF---------QKGLGNLRFEQLYNFKQH 392 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + Q++ +E+ + V++ + E L + L E + Sbjct: 393 SMQQFF-GQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLS-------LQE 440 Query: 483 VERMEIIRDLRLGEFDVLVGINL-LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 V+R I ++G+ +++ +L L G + + LV + + + G +R +++ I Sbjct: 441 VDRESI----QVGKVNLI---DLQLSNGFNFLDEKLVVMTEQEIFGKMRKKKARKLNITN 493 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 A R + + KY + G+++ + I Sbjct: 494 AER-----------LKDYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQY--- 539 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 G S P+ D + + + KI++L + + ++ I D Sbjct: 540 ------QNGDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDD 593 Query: 662 LHQLRELFIA 671 L +L A Sbjct: 594 LIKLYAERQA 603 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 67/463 (14%), Positives = 135/463 (29%), Gaps = 43/463 (9%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E FD + D + P + + ++ A Sbjct: 617 EEFDSGFSYVETEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGK 676 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q E G + + + + + + L + Sbjct: 677 QVAVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQT------EILAKLKKGRV 730 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ +H + + + + +G + + + ++A Sbjct: 731 DLIIGTHRLLSKDVEFFDLGLMIIDEEQRFGVKHKER--------LKELKTQVDVLTLTA 782 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTT 453 TP L S + D V T + V + I + + +V Sbjct: 783 TPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYVY 842 Query: 454 LTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E LEE ++H + V+ + G++DVLV ++ G+D Sbjct: 843 NRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVD 902 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 +P + + I +AD G + L Q GR R+ + + K + E + Sbjct: 903 IPNSNTLFIENADMMGLSQ----LYQLRGRVGRSNRVAYAYFMYRPE----KILSEVSEK 954 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + K E G G + D+ G + D+V D+ + Sbjct: 955 RLEAIKGFTELG---SGFKIAMRDLSIRGAGNLLGSEQSGF-------IDSVGFDLYSQL 1004 Query: 632 LQQKIH-ELEGLMMQHAQNL-------EFEEAAQIRDQLHQLR 666 L++ IH +L + N+ F A I D+ ++ Sbjct: 1005 LEEAIHTKLGTSKQKRTSNVEISLELDAFIPAYYISDERQKIE 1047 >UniRef50_B1KQF6 ATP-dependent RNA helicase rhlB n=10 Tax=Proteobacteria RepID=RHLB_SHEWM Length = 441 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 54/390 (13%), Positives = 107/390 (27%), Gaps = 44/390 (11%) Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 P ++ + + ++ F + H ++ Sbjct: 32 CTPIQALSLPILLQ--------KKDIAGQAQTGTGKTLAFLVATFDHLLSTPV-PEGRQL 82 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L + L + T + G ++ Sbjct: 83 NQPRAMIMAPTRELAIQIAKDATLLAKHTG-LKVGIVYGGESYDVQRKVLDKGVDILIGT 141 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + DY+ + + V + + M+ Sbjct: 142 TGRIIDYVRQGIINLSAIQAVVLDEADRMFDL-----------------GFIKDIRFLFR 184 Query: 382 FEA--LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQV 432 + + SAT E + + + + I + ++ Sbjct: 185 RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKM 244 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LLS I E+ +V + TK E++ +LE G RV L D+ +R+ I+ Sbjct: 245 RLLLSLI--EEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQF 302 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 G+ D+LV ++ GL + +VS V D + IGR R G ++ Sbjct: 303 TEGKLDILVATDVAARGLHISDVSHVYNYDLP-----DDCEDYVHRIGRTGRAGKKGVSV 357 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEE 581 + + AI E Y+ E Sbjct: 358 SFACEEYALNLPAIEEYITHSIPVTNYDSE 387 >UniRef50_A6DML6 ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DML6_9BACT Length = 542 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 58/416 (13%), Positives = 117/416 (28%), Gaps = 40/416 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + + + F I H+V + V+A L Sbjct: 139 TPVQEGVLPISL-KGQDVAAKAQTGTGKTAAFLISMYNHFVNNPQTEVKAGT--PRALIL 195 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + L + +E G + P L DY Sbjct: 196 APTRELALQIGADAEGLGKYCDIRVETF-FGGMDFDKQAQILRGRVDIAVATPGRLMDYH 254 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA--LAP 387 + + + + I + M K + Sbjct: 255 RRKMINLREVEFLCIDEADRMLD-----------------MGFIPDVRKIVGYLPGRDKR 297 Query: 388 QTIYVSATPGNYELEKSGGDVV--------DQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 T SAT L + + + + +D + + + +L + Sbjct: 298 ITQLYSATLNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQKVYTVTANQKENVILWHL 357 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFD 498 + +R+++ K E L + L ++G ++ L D+ +RM I+ + R G+ Sbjct: 358 KNE--EVKRMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQ 415 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV ++ G+ + +VS V + + +GR R GKAI + D+ Sbjct: 416 VLVATDVAGRGIHVDDVSHVVNYELP-----YEPEDYVHRVGRTGRASALGKAISFADEN 470 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I + + E + + G N G Sbjct: 471 SGFELPEIECYIEMQLPAEVPLEGMTDDHDKKHSERKFAQKRGGNKHSGNRNKGGS 526 >UniRef50_A0KXT6 DEAD/DEAH box helicase domain protein n=61 Tax=Gammaproteobacteria RepID=A0KXT6_SHESA Length = 491 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 53/409 (12%), Positives = 102/409 (24%), Gaps = 38/409 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + F + + + + Sbjct: 21 YTTPTPIQTKAIP-SILAGKNVLAAAQTGTGKTASFVLPLLHRFADAP----KIRPKRVR 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L + E + M G + + P L Sbjct: 76 AIILTPTRELALQ-VEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + S + + + M E Sbjct: 135 LDMYTQRAIRFDEVSVLVLDEADRML-----------------DMGFIEDINSIIEKLPE 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEI 439 Q + SAT + + D + + LLS + Sbjct: 178 QRQNLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHL 237 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q + L+ TK A L LE+ G HS R +++ D + G+ Sbjct: 238 IQEQN-WSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSF 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV + G+D+ ++ V D I IGR R N G+AI + K Sbjct: 297 LVATGVASRGIDIDALARVINYDLP-----DEADDYIHRIGRTGRAGNQGEAISFVSKDD 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 AI +++ + ++D + + + K Sbjct: 352 FRNLCAIERRLGHVIVRREIAGFEPKKV--VPISILDFVPKSASKTERK 398 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 238 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 105/661 (15%), Positives = 223/661 (33%), Gaps = 80/661 (12%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + + + + + L GV I +A + +P +++ N+ A Sbjct: 4 IDFLKKDQGVTAFIAKTSR-IKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQ 62 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 + + ++ ++ +E FV + + A + R+ +L Sbjct: 63 ERHNDLSRLLADDDLELFVLDGN-------------LATQTAVSSPDELSSRIQCLNLLL 109 Query: 132 ERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R VV+A+ + P L+ K H VG I + + L + Y R + + Sbjct: 110 SGRPGVVIATPQGLQYPLSAPALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKP 169 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F +RG+++D++P + + LR+E F +E++ + FD + + + +P T+ + +V Sbjct: 170 GEFAMRGDIVDLYPLDRES-PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHV 228 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 E + +A ELA + + ++ L +G Sbjct: 229 FTAEDLDRAG----RELAGDLPKEAAASLEIAQEALA----------------NGQLPDD 268 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 +L DYLPA GLL+ ++ + + M + + + + S Sbjct: 269 CNRYLDYLLSKSFSLLDYLPAKGLLLFNDWQLIAESVKNMGAINDDYLASQI-ASKMMTS 327 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 R +A +YVS + S G + +P + Sbjct: 328 RQKLRLDFDAVLKADCHHRLYVS------LMAHSMGRLRFGQHLAWDSREPQ----QFFS 377 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 Q++ L +E+ A + V++ ++R AE+ ++ + +D Sbjct: 378 QMELLKTELDSYAKKGQTVVLQVSSRRQAEEFNRSCHDYDIYLPLAEAD----------- 426 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 L+ G +++ G +P+ LV + + + + + I+T+ A R Sbjct: 427 GLKEGRAQLVI--GGYASGFVLPDSDLVYLTEKELFNQNKRSKKRIKTLENAQR------ 478 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + K ++ + G + + I KG Sbjct: 479 -----LRSYTELKPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITY---------QKG 524 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P + V ++ + Q I++L G + I D L +L Sbjct: 525 DQLFVPDDQLSLVQKYVASEGKQPHINKLGGSEWAKTKKRVAARVEDIADDLIELYAKRE 584 Query: 671 A 671 A Sbjct: 585 A 585 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 68/461 (14%), Positives = 123/461 (26%), Gaps = 38/461 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F+ D L P + + ++ A Sbjct: 600 AFEAAFPYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQ 659 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + Q Q + S + L + Sbjct: 660 VAFLVPTTILAQQHYQTIKDRFKGFPV------EIASFSRFQGQAESKKIVAGLKDGSID 713 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 +V +H + + + + + + + ++AT Sbjct: 714 LVVGTHRILSKDVQLKDLGLLIIDEE--------QRFGVAHKEKLKQLKTNIDVLTLTAT 765 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-DLLSEIRQRAAINERVLVTTL 454 P L S + D V T + V Q+ + ++ +V Sbjct: 766 PIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHN 825 Query: 455 TKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 E+ LE+ Y H + + +I+ EFD+LV ++ G+DM Sbjct: 826 RVGDIEETVARLEQLLPEARIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDM 885 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P V+ + I DAD G + L Q GR R+ + + K + E +R Sbjct: 886 PNVNTMIIEDADHYGLSQ----LYQLRGRIGRSARLAYAYFLYQPN----KVLTEVGEKR 937 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + E G G + D+ G + D+V D+ + L Sbjct: 938 LDAIRDFTELG---AGFKIAMRDLSIRGAGNMLGAQQHGF-------IDSVGYDLYSQML 987 Query: 633 QQKIHELEGLMMQHAQNLEF---EEAAQIRDQLHQLRELFI 670 I E +G N E EA D + + Sbjct: 988 ADAIKERQGKKPVKKSNAEVDLGLEAYIPEDYIADQEQKIE 1028 >UniRef50_A8JCM3 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8JCM3_CHLRE Length = 637 Score = 238 bits (606), Expect = 7e-61, Method: Composition-based stats. Identities = 62/435 (14%), Positives = 125/435 (28%), Gaps = 46/435 (10%) Query: 169 QRAILRRLAEL------QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV- 221 + + ++L +L + ++ V+ + ++ ++++ V Sbjct: 166 PQDLQQQLRDLLRIVCDGRSIPPPIPSFADMKLPPAVLRVLASKGIKKPTQIQMQGLPVA 225 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN--- 278 + FT+ + R+ E + L Sbjct: 226 LSGRDMIGIASTGSGKTLVFTLPMILIALQEEMRMPLGQNEGPIGMVICPSRELATQTYE 285 Query: 279 --KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + + R M+ G + P L D L + + Sbjct: 286 IADMYCQALNADRYPEVRVMLCIGGIDPKPMYETLRRGLHAVVATPGRLKDLLHKKRMNL 345 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 ++ + + M ++ F QT+ SAT Sbjct: 346 DICRYLCLDEADRMVDQV----------------GFEDDVRDILSFFRGQRQTLMFSATM 389 Query: 397 GNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERV 449 + +VD V G +E ++ LL +++ A V Sbjct: 390 PAKIKAFAESALVDPVEVNVGRAGAANMDVIQEVEYVKEEAKLPYLLECLQKTAPP---V 446 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV KR + + EYL G +H D +R I + G+ DVLV ++ +G Sbjct: 447 LVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIASFKKGDADVLVATDVASKG 506 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM--AKAIG 566 LD P++ V D + + IGR R G A + + S + Sbjct: 507 LDFPDIQHVINYDMP-----EEIENYVHRIGRTGRCGKTGVATTFINTKQCSETILLDLK 561 Query: 567 ETERRREKQQKYNEE 581 + +++ + Sbjct: 562 HLLKEAKQRVPHFLL 576 >UniRef50_Q4KGF7 ATP-dependent RNA helicase SrmB n=25 Tax=Gammaproteobacteria RepID=Q4KGF7_PSEF5 Length = 473 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 61/446 (13%), Positives = 125/446 (28%), Gaps = 54/446 (12%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ ++ F + + P + + L Sbjct: 49 EPTPVQAAAIPLALQG-RDLRVTAQTGSGKTAAFVLPILNRLIGPA-----KIRVSIKTL 102 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L L E +R +Q T F + G ++ P + + Sbjct: 103 ILLPTRELAQQTLKEVERFSQFT-FIKSGLITGGEDFKVQAAMLRKVPDILIGTPGRMLE 161 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L A L + + + + + L + + Sbjct: 162 QLNAGNLDLKEVEVLVLDEAD-----------------RMLDMGFAEDVQRLVDECPNRQ 204 Query: 388 QTIYVSATPG-NYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEI 439 QT+ SAT G + E + + + + I + +++ + Sbjct: 205 QTMLFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWL 264 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ +V T T+ MA+ + L + LH + D +R I L+ G + Sbjct: 265 LAN-ETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKI 323 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ GLD+ + LV D + G + IGR R N G AI Sbjct: 324 LVATDVAARGLDVDGLDLVINFDMPRSG-----DEYVHRIGRTGRAGNDGLAISLICHGD 378 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 ++ +I ++ + + + ++ K KA G+ Sbjct: 379 WNLMSSIERYLKQSFE---------------RRTIKEVKGTYSGPKKVKASGKAVGVKKK 423 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMM 644 + D A + Sbjct: 424 KTDAKGDKKKAVAKAPTKRKTANRPK 449 >UniRef50_UPI00019267D4 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 n=3 Tax=Hydra magnipapillata RepID=UPI00019267D4 Length = 685 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 56/408 (13%), Positives = 120/408 (29%), Gaps = 25/408 (6%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R E+ + +L+ V + I+ + + + R Sbjct: 60 RFEISKSTMTKLNANGIKAFFPVQSTTYNAIFEGSDVIVQARTGTGKTLAFTLPVIERLN 119 Query: 273 VL-LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L + T+ + + N +S G L Sbjct: 120 SENLTERGRVPLVLALAPTRELAMQIYQEVEKFKPNN--VQVSCFYGGSSYEKQEGELRR 177 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE---ALAP 387 +V I + + + L E + + K + A P Sbjct: 178 GVDFLVGTPGRIADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKHSYTSARKP 237 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRP----------TGLLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + S + + + + + + Sbjct: 238 QTLLFSATVPPWLQQNSKKYLSSNLKVFDLIGEDKNKGATTVQHKVIKCSYWERPLLIKD 297 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ + + ++ T TK+ A +L+ +E + LH DI +R ++ R G+F Sbjct: 298 IMQLYSGKFGKTIIFTTTKQEANELS--VESSIPDSQVLHGDISQSQREITLQGFRNGKF 355 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 + L+ ++ GLD+PEV LV + I GR R G +++ Sbjct: 356 NCLIATDVAARGLDIPEVDLVIQTEPPN-----DIDFYIHRAGRTGRAGRSGVCVVFYKP 410 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 S A+ + ++ I + + + + ++ Sbjct: 411 GQESEIAAVEKRTGVTFEKITPPNPEEIVSSCADDAIRSLEKVNSDVI 458 >UniRef50_Q6KZC2 ATP-dependent RNA helicase n=1 Tax=Picrophilus torridus RepID=Q6KZC2_PICTO Length = 387 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 62/385 (16%), Positives = 109/385 (28%), Gaps = 29/385 (7%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L V + I V L + L + Sbjct: 17 ESLDRMGFYEPTEVQGLAIPEILSGRDVVIKSMTGSGKTAAF---LIPAIQRALGSKFFN 73 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + L+ + I + G L +++ Sbjct: 74 TVLIILPTRELALQTYSVA---LNISRNFFRTTVVYGGSSMEKQIHDLRDSKIII-GTPG 129 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 I I + + L E L + K E Q + SAT Sbjct: 130 RIIDLINRDLLNLEHVGMFILDEADMMLDMGFIDDIYKIIENLPEKRQNVLASATMPERL 189 Query: 401 LEKSGGDVVDQVVRPTGL------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + D + + + P + LLS I + + + ++ Sbjct: 190 DDMIKNLMNDPELIAVSNGYTPKTIVHDYTIIPEHKKFSALLSYIDE--NRDMKRIIFVR 247 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK A L+E L + G + LH D+ R I+ R +++ N+ G+D+P+ Sbjct: 248 TKHGAVVLSEILNKCGFKNVTLHGDMRQRSREISIKRFRNYRSGIMIATNVAARGIDIPD 307 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG--ETERR 571 V + DA +S GR+ R G A+ + +M I + Sbjct: 308 VDEIINFDAPI----DDIKSYSHRAGRSGRFGRPGHALTIFTEKQKNMINEIEMKNNVKM 363 Query: 572 REKQQKYNEEHGITPQGLNKKVVDI 596 K K N+ + N DI Sbjct: 364 DHKIIKINDVY------YNIDYRDI 382 >UniRef50_B4U778 DEAD/DEAH box helicase domain protein n=2 Tax=Aquificaceae RepID=B4U778_HYDS0 Length = 364 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 95/323 (29%), Gaps = 15/323 (4%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 A L+ K + + T+ + E Y Sbjct: 42 GQAATGTGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKYKR-LSSY 100 Query: 315 GRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSAL 372 G D L + +++ I + L E+ L Sbjct: 101 VFYGGTSVKQNLDILQNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGF 160 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQ 431 F T SAT + + + D ++ + + Sbjct: 161 IEDIEYIISFLPKERTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIK 220 Query: 432 VD---DLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + + E+ + E++L+ TK+ A+DL L + G R + LH D+ +R Sbjct: 221 LSSPGEKIHELMHIIDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQRE 280 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + + + G +L+ ++ GLD+ +V +V + I IGR R Sbjct: 281 KALSAFKSGAVSILIATDVAARGLDIKDVGVVINYNIP-----EDPELYIHRIGRTGRIG 335 Query: 546 VNGKAILYGDKITPSMAKAIGET 568 +GKA I + Sbjct: 336 KSGKAFSLICPEDSKALWRIKKL 358 >UniRef50_D2AV63 DEAD/DEAH box helicase domain-containing protein n=22 Tax=Actinomycetales RepID=D2AV63_STRRD Length = 571 Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats. Identities = 51/382 (13%), Positives = 98/382 (25%), Gaps = 42/382 (10%) Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 R + FP +S I ++ S F + Sbjct: 37 RQGIDSPFPIQSATIP--------DILAGSDVLGRGQTGSGKTLAFGLPMMARIA----- 83 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLS 314 + LA E + + G G + + Sbjct: 84 --GSKARPGRPLAVVLVPTRELAMQVTDALEPLGRGLSLRMKTVVGGMSMGRQIEALRRG 141 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D + + + + + M Sbjct: 142 VEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLG-----------------FFP 184 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQ 431 + Q + SAT + + D V + + E + Sbjct: 185 VVSAILQQTPADSQRLLFSATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVH 244 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 DD + A R ++ T+ + L + L + G + LH +R I+ + Sbjct: 245 RDDKFPVTAEIANREGRTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAE 304 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 + G +VLV ++ G+ + +SLV +D + +S + GR AR G Sbjct: 305 FKEGAINVLVCTDVAARGIHVDNISLVLHVDPP-----QDHKSYLHRGGRTARAGEKGTV 359 Query: 551 ILYGDKITPSMAKAIGETERRR 572 + A+ + Sbjct: 360 MTLVLPNERRSTDAMTRRAGIK 381 >UniRef50_Q12UP5 Dead box RNA helicase n=4 Tax=Archaea RepID=Q12UP5_METBU Length = 522 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 54/411 (13%), Positives = 108/411 (26%), Gaps = 29/411 (7%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D + + + + I + + +E Sbjct: 11 DAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGII----QKIEK 66 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + LT + ++ N L S ++ G L +VV Sbjct: 67 GNGIRALVLTPTRELAEQVQNSLKEFSRH--KQLRVAPIYGGVAINPQIRQLER-ADVVV 123 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + I L E L + + + QT+ SAT Sbjct: 124 ATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFSATV 183 Query: 397 GNYELEKSGGDVVDQV------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 S + + + L + P + L+ ++ + V+ Sbjct: 184 SKDIQYLSSKYMNNPSKVFAKAYVDSDKLKQVYIDVPKKMKFSLLVHLLKSEKS--GLVM 241 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T+ + + + L ++ +H +R + LV ++ GL Sbjct: 242 VFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVCTDVAARGL 301 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+P VS V D + IGR AR GK I + + + Sbjct: 302 DIPHVSHVYNFDIP-----DDPSEYVHRIGRTARAGREGKVINVVADVDKGGFTRLSK-M 355 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 R K ++ + + ++ G + + + R R Sbjct: 356 HRNFKIEREDLPE------FERVLIKSEDSGGRPTRGRREDRKGGRREDRK 400 >UniRef50_A6NSW7 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NSW7_9BACE Length = 400 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 96/351 (27%), Gaps = 18/351 (5%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + + + T+ + + Sbjct: 50 KDVIAKAPTGTGKTFAFGIPMVEHIDPESDAVQA----LVLAPTRELALQIQDELRDLCE 105 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 G P L +VV + + + D+ L E Sbjct: 106 FKEGVRSVCLYGGAPIEKQITTLKKHPQIVVATPGRLMDHMKRRTVKLDKVETVVLDEAD 165 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---- 421 L + + + SAT ++ S D V + Sbjct: 166 RMLDMGFIHDVTRILDQIKSRKNLGLFSATISREVMDISWVYQRDPVEIVVRPDEENKPD 225 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 I + R D L + R + TK M + L+ L+ G + +H D Sbjct: 226 IQQYRIDLEGRGDKLETMVALLTHGGYERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGD 285 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 I R + ++ R G+ VLV ++ GLD+ +V +V D I I Sbjct: 286 IQQRIREKTLQAFREGKMRVLVATDVAARGLDIDDVDVVFNYDVP-----DEIEYYIHRI 340 Query: 540 GRAARNVN-GKAILY-GDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 GR R G A + I + + KY+++ + P Sbjct: 341 GRTGRAKRHGVAYSLVVGITEQMKMEQIAKNTKADITVLKYDKDGCLLPAD 391 >UniRef50_C1FAF2 ATP-dependent RNA helicase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1FAF2_ACIC5 Length = 430 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 100/386 (25%), Gaps = 38/386 (9%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +E F + + + L Sbjct: 24 PTPVQEAAIPPAMEG-KDVLATAQTGTGKTLGFLLPAMERLLA-------TKGKHPAVLI 75 Query: 269 ARRKVLLENNKLLE-EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + Q + ++ G + R P L D Sbjct: 76 LTPTRELALQVEKQYAQLAGKSLPQAATLI--GGASENNQIRDLKAGARLIVATPGRLED 133 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L + + + + + M + Sbjct: 134 FLERRLIDLKRIEVLVLDEADRMLD-----------------MGFIPAIRRIVAKLPRQR 176 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRA- 443 QT+ SAT + + V G + + D + + + Sbjct: 177 QTMCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVDADQKAALVHRVVT 236 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 A + LV TKR E + + L+ G V LH D +R + D + G VLV Sbjct: 237 AEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLVAT 296 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMA 562 ++ G+ + ++ V D K I GR R G A + + Sbjct: 297 DVASRGIHVDNIAQVINYDMPKM-----TEDFIHRAGRTGRAGATGVAATFYTPLERREF 351 Query: 563 KAIGETERRREKQQKYNEEHGITPQG 588 +T R+ ++ + G+ + Sbjct: 352 NRFEKTLNRKIERVMIASDSGLDREE 377 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 102/677 (15%), Positives = 230/677 (33%), Gaps = 78/677 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTM 61 + + + I ++ D + Q + GV + K A V L+ + + Sbjct: 1 MMHSLTDFISRLPLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKIL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L + A QL +++ + V S ++ + A + + Sbjct: 61 LLTDTQFRADQLTSDLEALLEDENVFEMQ-------------SEESLATETAVASRDADL 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R+ A +A+L + + +VV +S + P+ + + +L + Q + ++L E+ Sbjct: 108 SRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y + G F VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + Sbjct: 168 YNKQTLVANPGEFSVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQ 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 ++ P + ++ PR ++++++ K E+++LT+ LE Sbjct: 227 ASVSPVSDFLLPRAEFSDGLKQLEQAFVDYLNK----LKGAEKKKLTEFFNPLLEAAKHF 282 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 Y + +S F ++F+YL ++ L+++D+ Q + + Sbjct: 283 SYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITD 335 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV----RPT 416 + LP ++ + + + + Sbjct: 336 RLREFKLLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKI------YLSNLTRGLAGITF 389 Query: 417 GLLDPII--EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 +I +++ Q+ L ++ + VL+ + L L + G Sbjct: 390 TSRTQLITRQMQQYFGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMNFA 449 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 I D+ G + +G L G ++PE +V + + + ++ Sbjct: 450 -------------ITDDILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVP 494 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 QT + K Y + T + R E + G + + Sbjct: 495 RHQTF-----SNAEKITSYTELKTGDYVVHVNHGIGRYEG------LTTLEANGGKQDYI 543 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 I A+ P+ + V + + K++ L + + Sbjct: 544 TIAY---------AQKAKIFVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAK 594 Query: 655 AAQIRDQLHQLRELFIA 671 I D+L L Sbjct: 595 VEDIADELIALYSKREG 611 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 58/436 (13%), Positives = 126/436 (28%), Gaps = 34/436 (7%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R + FD+ D L P + + + A Sbjct: 623 RQQEFDDGFAYPETVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIED 682 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 Q Q +E ++ E LS + L A Sbjct: 683 HKQVAFLTPTTILSQQHYQTAIERFSDF-----PEIKIAMLSRFNTAGQNKEVIKKLKAH 737 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L +V +H + + + + + + + + Sbjct: 738 QLDMVIGTHRLLSKDVAFDDLGLLIIDEE--------QRFGVKHKEKIKQLRANVDVLTL 789 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINERVLV 451 +ATP L + D V T + V + I + + + Sbjct: 790 TATPIPRTLNMALVGARDLSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFF 849 Query: 452 TTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + E ++ V Y+H ++ + +++ D G +DVLV ++ G Sbjct: 850 LHNRVQDIERTVGEIQRIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETG 909 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+P + + + ++++ G + L Q GR R+ + + Sbjct: 910 VDIPNANTLIVENSERFGLSQ----LYQLRGRIGRSNRLAYAYFTYPGDRQPTED----A 961 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 ++R + + E G G + D+ G K + D+V ++ Sbjct: 962 QKRLEAIRDFTELG---SGFKLAMRDLSIRGAGDLLGKQQHGF-------IDSVGYELYQ 1011 Query: 630 KALQQKIHELEGLMMQ 645 + LQ+ + + +G + Sbjct: 1012 QMLQEAVSQKQGKDKK 1027 >UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQY6_BDEBA Length = 473 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 71/433 (16%), Positives = 128/433 (29%), Gaps = 47/433 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 S ++ + ++ S + F + T E Sbjct: 54 SKPTPVQSQAIPASLDG-SDIIAIAQTGSGKTLAFALSLLTTLQKKPEARG--------- 103 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + L + G + + R P + Sbjct: 104 LILVPSREMAQQIYKVFLELCA-EMPVSVCLAIGGTTGSKQANQLKKNPRLIIATPGRMN 162 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L + LL+ + + + + L + + Sbjct: 163 DHLSGNKLLLQNVEVIVLDEADR-----------------MLDMGFAPQLRTIQSTLRGP 205 Query: 387 PQTIYVSATPGNYELEKSGGDVV-DQVVRP-------TGLLDPIIEVRPVATQVDDLLSE 438 QT+ SA+ G+ + + D V+ L + + + D LL E Sbjct: 206 RQTMMFSASFGSNVESIAQLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDE 265 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A V+V T + E + YL+E+G +H + +R ++R R GE Sbjct: 266 LN---ATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIR 322 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 ++V +LL GLD+P V V D + IGR AR G+AI + Sbjct: 323 IVVATDLLARGLDVPHVDHVVNFDLPF-----QSEDFLHRIGRTARAGRGGEAITFVTPS 377 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 M I + ++ + K + A G A+ A G+ ++ Sbjct: 378 DTRMYAKIKGYLQGAQEIKVDPTF--AFIDRSKKFDKNKPAKGNEPARRNAPGKPQAVKK 435 Query: 618 VEPDNVPMDMSPK 630 P P K Sbjct: 436 AAPAGKPKSKGGK 448 >UniRef50_C1E681 DEAD/DEAH box RNA helicase n=2 Tax=Micromonas RepID=C1E681_9CHLO Length = 790 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 59/405 (14%), Positives = 108/405 (26%), Gaps = 39/405 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + + ++ F++ ++ + Sbjct: 157 FPIQASVLEPALQG-RDVVGRARTGTGKTLGFSLPIIESLLSNPSNRTDRSRN-PRCIVL 214 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L N E Q + G L Sbjct: 215 APTRELANQVEKEIQATVPSLRTL---------------------CVYGGVAISNQERPL 253 Query: 330 PADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +VV I I L E L + + E Q Sbjct: 254 RRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEEIPEQRQ 313 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDPIIEVRPV-------ATQVDDLLSEIR 440 T SAT ++ + + D V G + + T +L+++ Sbjct: 314 TFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTTILADLV 373 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + T TKR A+++T L LH DI +R ++ R G F VL Sbjct: 374 TVYGKGAKAICFTQTKREADEVTAALGRR-MATEVLHGDIAQAQRERTLKRFRDGRFSVL 432 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITP 559 V ++ GLD+ +V LV + S + GR R G AI Sbjct: 433 VATDVAARGLDITDVDLVVHYELPH-----DTESFVHRCGRTGRANKKGAAIAMYTPREK 487 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 S ++I + + + + ++I + + Sbjct: 488 SRIRSIVRETGVKFRVINPPTAAEVMTSSAEQASIEIDLVDDELL 532 >UniRef50_Q965K2 Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q965K2_CAEEL Length = 970 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 64/460 (13%), Positives = 120/460 (26%), Gaps = 32/460 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLL 281 L F+ + +I + + + + LE Sbjct: 319 LKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQPELEEGDGP 378 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 L + ++ E + ++ G L +VV Sbjct: 379 IAVILAPTRELAMQTYKEANKFAKP--LGLKVACTYGGVGISEQIADLKRGAEIVVCTPG 436 Query: 342 VTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 I + G + R L E + + +K QT+ SAT Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFP 496 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + V G + + + LL + + Sbjct: 497 RHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSS-I 555 Query: 451 VTTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 V + A+D+ + L G V LH ID +R I D + G VLV ++ G Sbjct: 556 VFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARG 615 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI-TPSMAKAIGE 567 LD+ + LV D + +GR R G A + MA I Sbjct: 616 LDVKNLILVVNYDCPNH-----YEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICR 670 Query: 568 TERRREKQQKYNEEHGITPQGLNKKV------VDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + + ++ V + G + K + Sbjct: 671 AFETAG--CKPPADLKAMFERFKSEMAAEGKEVKLGGKGFEGSGYKYDEGEAEADANKKR 728 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + +A +LE + + + + + Sbjct: 729 MTRLVHGMEAGGDDDDDLEEQLSSMIKTKRRVVHGKPQSE 768 >UniRef50_B7G1B9 Predicted protein (Fragment) n=48 Tax=Eukaryota RepID=B7G1B9_PHATR Length = 462 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 57/410 (13%), Positives = 121/410 (29%), Gaps = 25/410 (6%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TPRERI 256 E I+ + ++ + ++R + F + + + P + Sbjct: 51 EAIEQVLRFKEPSPIQRQAIPIGLQR-RDLIGIAETGSGKTVAFGVPLCHYLLNLPSRVL 109 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + L L E Q+L R + + G + Sbjct: 110 ESVADAGPLALVMAPTRELALQIDGEFQKLLSRQRLIRTVGIVGGQQIQQQAQELRRGVH 169 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 P + + + +++ ++ + + M A + + +N Sbjct: 170 IVVGTPGRINECIDMAYMVLNQCCYIVLDEADRMIDMGFAPQIETILDACGGSLKSENEA 229 Query: 377 LKFEEFEA--------LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLD 420 +++ + T SAT + + + G ++ Sbjct: 230 ETYQQEKEDLQKADVARHRLTAMFSATMPPEVERIAKRYLRHPAIVSVGDKDSGKNARIE 289 Query: 421 PIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 I +Q + +L +++ R + E+++V K+ AE + +E G LH Sbjct: 290 QRIMFLASVSQKEKVLREQLQDRRFLREKIIVFVNEKKHAEGVGRMVERSGRACVVLHGG 349 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 +R E + R G VLV ++ GLD+P+V+ V D RS + I Sbjct: 350 KTQEQREENLETFRRGNV-VLVATDVAGRGLDIPDVAHVINYDLPT----RSIENYTHRI 404 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 GR R G A + + + + G Sbjct: 405 GRTGRAGKEGVATSFITDEDEGIMAPLKAYLESTGNRVPERLARHPAANG 454 >UniRef50_A5DU73 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=4 Tax=Saccharomycetales RepID=PRP28_LODEL Length = 597 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 54/390 (13%), Positives = 111/390 (28%), Gaps = 26/390 (6%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY--VTPRERIVQAMEEIKE 265 ++ +E L + F + + V + + Sbjct: 207 QPTPVQRASIPISLE-LRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPL 265 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS----GIENYSRFLSGRGPGEP 321 L L E ++ ++ F++ + I+N Sbjct: 266 ALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGT 325 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D + L ++ + + M + + L Sbjct: 326 PGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLLPKNEKLSTTIDGKLF 385 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 T+ +AT + + ++D G +D + + Sbjct: 386 HLTK-RLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEALDNIDQHFDYLSTYAESAR 444 Query: 435 LLSEIR-----QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L I+ +R N V++ K + + L+ LE++ +H R E + Sbjct: 445 LSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNNLLNVVIHGSKSQEAREEAL 504 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 D R + +LV ++ G+D+P VSLV + I IGR R N G Sbjct: 505 EDFRTHQAPILVATDVAARGIDVPNVSLVINYQM-----SKKFDEYIHRIGRTGRAGNLG 559 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKY 578 ++ + D + + + K+ Sbjct: 560 ESYTFLDDADAETFMPLKKFLKSGRKKVPE 589 >UniRef50_D2QQV9 DEAD/DEAH box helicase domain protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQV9_9SPHI Length = 535 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 65/426 (15%), Positives = 131/426 (30%), Gaps = 19/426 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L D+ + + + L + + I + + L + Sbjct: 8 LHDDLLAGVDAMNYLKATPIQEMAIPKILAGKDLIASAQTGTGKTAAYLIPLLDKISHT- 66 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNE--LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ + ++E G+ ++ S + G G G+ L Sbjct: 67 --AHDHTSTLILVPTRELAKQIDEQVEGFGYFVQANSIAIYGGGKGDDWDKQRKALETGA 124 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +++ I + G + D+ L E L + + E QT+ Sbjct: 125 DIIIATPGRLIAHMQLGYVKFDKIDYLVLDEADKMLDMGFSDDIMNIVEKIPAKRQTLLF 184 Query: 393 SATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 SAT N E S + D +D + ++ L I+ Sbjct: 185 SATMPNKIREFSKKLLTDPEEIRLAVSKPAAGIDQQFYMAFDNQKLPLLAHLIKNSTKPV 244 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +++ T K + L + R + SD++ +R ++RD + F +LV ++L Sbjct: 245 QSMVLFTSRKSEVNSIVRALSKLNYEARGISSDLEQDDREVVLRDFKNKAFPILVATDVL 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITPSMAKAI 565 G+D+ ++ V D R + I A G AI + + +I Sbjct: 305 SRGIDIDNLTHVVNYDIP-----RDAEDYVHRIGRTARAATTGTAITFVSDQDQNRIVSI 359 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + R +Q EE G+ + G + A+G + D Sbjct: 360 EKLIEREVDKQAITEELGMGKSPVFDPKRFSGRRGDSSRGGSARGANAAGK-GGRDGRAK 418 Query: 626 DMSPKA 631 + Sbjct: 419 RNGRRD 424 >UniRef50_Q1D015 ATP-dependent helicase, DEAD/DEAH-box family n=6 Tax=Cystobacterineae RepID=Q1D015_MYXXD Length = 808 Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 46/411 (11%), Positives = 101/411 (24%), Gaps = 45/411 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ F +E + F + R+ Sbjct: 49 YTNPTPVQARAFRPAIEG-KDLIVRSKTGTGKTAAFGLPLLEKIPADERRV--------R 99 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E + L + ++ G Sbjct: 100 ALILCPTRELALQVADELKMLAKH-------------------KGLKIAAIYGGASMKQQ 140 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D L ++V I + D L E L + + Sbjct: 141 EDALEEGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLP 200 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPI-IEVRPVATQVDDLL 436 Q + SAT + + I +V + +L+ Sbjct: 201 KTRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLI 260 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + ++ T+ +T L +G L+ D+ ER ++ ++ GE Sbjct: 261 YVL--EKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGE 318 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +V ++ G+D+ + V + +GR R G AI Sbjct: 319 VAFMVATDIAARGIDISGLEYVINYSLP-----EDPAVYLHRVGRTGRIGNKGTAINLFS 373 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + ++ + + +++ + V +I Sbjct: 374 GRELATYTSLEKKYGIKFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFE 424 >UniRef50_A8PM28 Dead/deah box helicase n=1 Tax=Rickettsiella grylli RepID=A8PM28_9COXI Length = 421 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 99/367 (26%), Gaps = 15/367 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + + + T + I V + L + Sbjct: 8 FNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLLQQLTEGP 67 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + T+ + + G + + R + G + L + Sbjct: 68 PGQLR---ALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLLTGGVDI 124 Query: 336 VVDESHVTIPQIGGMYR--GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +V + + G + + L E + + Q + S Sbjct: 125 IVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRRQNLLFS 184 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDP--IIEVRPVATQVDDLLSEIRQRAAIN--ERV 449 AT + V G P I ++ + + Sbjct: 185 ATMSADIRLLIDKVLHRPVRIQIGEPKPAVTITQTLFPVSETLKVNLLETILQNHSIHSA 244 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ T TK A+ L E+L + G + ++ R + R GE LV ++ G Sbjct: 245 IIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKFLVATDVAARG 304 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 +D+ +S V D + IGR R G A K ++I Sbjct: 305 IDIDHLSHVINFDMPN-----TAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQSIEHL 359 Query: 569 ERRREKQ 575 +++R ++ Sbjct: 360 QKKRLEE 366 >UniRef50_Q6CT49 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Kluyveromyces lactis RepID=PRP28_KLULA Length = 539 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 56/409 (13%), Positives = 120/409 (29%), Gaps = 40/409 (9%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +I ++ +++ + F + F + Sbjct: 150 NIITNDLHYNEPTSIQRSTIPNVI-NNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNS 208 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L L +E + + + Sbjct: 209 ITKHDGPLALVLAPTRELAQQIQ-----------------HEGQSITKLWKRPCNIVSIV 251 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRP 376 G + L ++V + + + + L E + +++ Sbjct: 252 GGHSLEEISANLRDGCDILVATPGRLLDCLDSHLLFLKQVNTLVLDEADKMIDFGFEDQL 311 Query: 377 LKFEEFEA--LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------LLDPIIEVRPV 428 QT+ +AT + + G + G + I+ P Sbjct: 312 TTILAKTETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPD 371 Query: 429 ATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L + + N + +++ KR A+ L + L E R LH +R Sbjct: 372 EEEK---LKILVKDFLPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQRE 428 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + LR G+ D+L+ ++ G+D+P VSLV F +S S + +GR R Sbjct: 429 HSLSLLRNGKVDILIATDVAGRGIDIPNVSLVVN-----LQFPKSFDSFVHRVGRTGRAG 483 Query: 547 N-GKAILYGDKITPS--MAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 G A+ + + MAK ++ + Y + ++ ++K Sbjct: 484 KTGTALTFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMSKYNVDKS 532 >UniRef50_A9BNS0 DEAD/DEAH box helicase domain protein n=16 Tax=cellular organisms RepID=A9BNS0_DELAS Length = 707 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 57/464 (12%), Positives = 115/464 (24%), Gaps = 91/464 (19%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++R +A+L Y + + I L + D + Sbjct: 97 EELVRAVADLGYTQPTAVQ------------------AQAIPLAMGSDD---QAFIDLMV 135 Query: 230 LTGQIVSTIPRFTIYPKTHYVTP----------------------------------RER 255 + F + + Sbjct: 136 SSQTGSGKTAAFLLPVLHTLIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTN 195 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + L L + L + + G ++ + Sbjct: 196 PRNFKAAVPGALILCPTRELAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKLQ-NA 254 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D + + + + + + M + Sbjct: 255 NLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDL-----------------GFSDD 297 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD------QVVRPTG-----LLDPIIE 424 + + A QT+ SAT + + + D +V T + ++ Sbjct: 298 LAEVNDLTAQRKQTMMFSATFAPRIQQLAMRVMHDGGSGVKKVTIDTPQEKHASIKQVLF 357 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + LL + IN + +V T+ + L L++ G LH + Sbjct: 358 WADNSQHKRKLLDHWLRDTTIN-QAIVFASTQVECDGLANDLQQDGFSAVALHGALSQGL 416 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + LR G+ VLV ++ G+D+P ++ V G IGR R Sbjct: 417 RNRRLMALRSGQVQVLVATDVAARGIDVPTITHVFNY-----GLPMKAEDYTHRIGRTGR 471 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 G A+ + + I R++ K + Sbjct: 472 AGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPGLEPAQRA 515 >UniRef50_C9LM67 ATP-dependent RNA helicase DeaD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM67_9FIRM Length = 424 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 55/410 (13%), Positives = 121/410 (29%), Gaps = 19/410 (4%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 +E L+ G T+ + P + ++ K Sbjct: 10 IEPLAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQRVDVKKG 69 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + T+ + + ++ I ++ G L + +++ Sbjct: 70 GTQVLIMTPTRELAKQIFDVLRPFAILME-ADVADIIGGRTIENQIQKLKREPHIIIGTP 128 Query: 341 HVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + I + L E L + + Q + SAT Sbjct: 129 GRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQVLLFSATMPPE 188 Query: 400 ELEKSGGDVVDQVVRPTG------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + + VV ++ + + L+ +++ +V Sbjct: 189 AKKLAHKYMKSAVVADVAEKAVASTVEQRVYETVKTHKFSLLVRHLKEI--NPYMAVVFC 246 Query: 454 LTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ A +L L+E V +H ++ +R ++IR+ VLV ++ GLD+ Sbjct: 247 NTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLDV 306 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 ++ V D R+ I IGR R G +I Y + + + + + Sbjct: 307 EGITHVFNYDIP-----RNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRKLEKAIKE 361 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 KY+E+ I ++ G K + + + Sbjct: 362 --IITKYDEKGNIRRIKGPSAKKKVILPGMYKPTKKKEHKVLGHKGSDMR 409 >UniRef50_C1TPC6 DNA/RNA helicase, superfamily II n=3 Tax=Synergistaceae RepID=C1TPC6_9BACT Length = 605 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 103/384 (26%), Gaps = 21/384 (5%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R EL +E + L+ + V + V L Sbjct: 43 RYELREELLNALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNELP 102 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + T+ + + G + G L Sbjct: 103 RETA----TPRILVLSPTRELAQQIAGEAEWIGKYMGI-TTASLVGGMDMERQIKDLRRG 157 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 LVV T+ I + D + L E L + +T Sbjct: 158 SALVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWL 217 Query: 392 VSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + + + P +++ L++ + Sbjct: 218 FSATMPDEVASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWE-- 275 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E L+ TK + E L+E G LH D+ +ER ++ R G LV N Sbjct: 276 NPEMGLIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATN 335 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+ VS V G + + + GR R G+ IL K Sbjct: 336 VAARGLDVQGVSHVIQ-----IGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFK 390 Query: 564 AIGETERRREKQQKYNEEHGITPQ 587 A+ K + I Sbjct: 391 AMLRASSMDLKWANVPDVAEIAKA 414 >UniRef50_Q6FM43 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Candida glabrata RepID=PRP28_CANGA Length = 582 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 111/381 (29%), Gaps = 35/381 (9%) Query: 206 ESDDIALRVELFDEEVERL----SLFDPLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAM 260 + A++ + + F+I P + Sbjct: 191 FDEPTAIQRITIPNAISSNKSVPRDILGIASTGSGKTLAFSIPILARLDALPARPVNLKT 250 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGIENYSRFLSGRG 317 + L L E RL + + G+ +++ Sbjct: 251 LDGPLALVLVPTRELAQQISQEINRLLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDI 310 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D L +++ + + + M + + Sbjct: 311 LIATPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSILSHLMADE------- 363 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVA-TQV 432 A QT+ +AT + + G + + + G P+I Sbjct: 364 ------LAARQTMLFTATLSSSVESIAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDD 417 Query: 433 DDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D LS ++ ++ K A+ LT L + + LH +R I+ Sbjct: 418 DKKLSFLKDDLIKNGLPAIIFINYKETADWLTLRLSDR-FNIVTLHGSKSQSQRESAIQK 476 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 L+ G +VL+ N+ GLD+P+V+LV + I IGR R G A Sbjct: 477 LKSGTANVLIATNVAARGLDIPDVALVVN-----FQMSKKFDDYIHRIGRTGRAGKTGIA 531 Query: 551 ILYGD-KITPSMAKAIGETER 570 + Y + P + K + + + Sbjct: 532 VTYLTGEEDPQLIKQLAKYVK 552 >UniRef50_Q6BLU9 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetales RepID=PRP28_DEBHA Length = 580 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 102/386 (26%), Gaps = 34/386 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI------VQA 259 ++ + + F + ++ ++ ++ Sbjct: 175 YDSPTPIQRASIPLALNG-RDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQES 233 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 L L E + + ++ + G+ +S Sbjct: 234 NFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTII-GGHQYEETVHSVRNGVHIVV 292 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D L + + + T+ + M + + L+ Sbjct: 293 ATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGK 352 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEV------- 425 T+ +AT + + ++ ++ E Sbjct: 353 IFNI-KKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSS 411 Query: 426 --RPVATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGER-VRYLHSDI 480 ++D L S +R N +++ K+ E+L L G +H Sbjct: 412 DEILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSK 471 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 R I R G+ +L+ ++ G+D+P VSLV + I IG Sbjct: 472 SQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQM-----TKKFDEYIHRIG 526 Query: 541 RAARNV-NGKAILYGDKITPSMAKAI 565 R R G + + D + + Sbjct: 527 RTGRAGNKGTSCTFIDDGDSEVFLDL 552 >UniRef50_Q9GV07 Vasa-related protein PlVAS1 (Fragment) n=1 Tax=Dugesia dorotocephala RepID=Q9GV07_9TURB Length = 573 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 56/398 (14%), Positives = 110/398 (27%), Gaps = 51/398 (12%) Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY---VTPRER 255 + + P + + + ++R F I V + Sbjct: 133 YVKLTPVQKYAVPI--------IDRGRDLMACAQTGSGKTAAFLIPIIKGLHGTVLETDS 184 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY-SRFLS 314 + L L RL R G + Sbjct: 185 SNTSSTAFPRALIMTPTRELCRQI-FTAARLLCRGSNIRCAYMYGGIEMNKSRRNIQATG 243 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L +L + + + + + M Sbjct: 244 CDILVATPGRLIHFLELVWVSLRYIKYFVLDEADRMLDE----------------EGFYE 287 Query: 375 RPLKFEEFEA------LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDP 421 K + + SAT N + + + + G + Sbjct: 288 VVNKIYKEAHQSGDADRSIHLSMFSATFPNEIQTLASRLLSNYLFLAVGVVGSANCDVKQ 347 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I +V + I+ +E+ L+ +KRMA+ L G + +H D + Sbjct: 348 EIIRAEQRDKVTSAIELIKTI--PDEKTLIFVESKRMADFFGIKLGYLGFKATTIHGDRE 405 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +R + D + G + +V N+ GLD+P+V V +D + + + IGR Sbjct: 406 QEQRESALNDFKSGRINFMVATNVAARGLDIPKVDNVINIDMP-----DTIDTYVHRIGR 460 Query: 542 AAR-NVNGKAILYG-DKITPSMAKAIGETERRREKQQK 577 R G+AI + D+ +A A+ + + + Sbjct: 461 TGRCGNVGRAISFFDDQKDLGLAGALVGKLQEANQPVE 498 >UniRef50_C5LT44 RNA helicase-1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5LT44_9ALVE Length = 1227 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 60/468 (12%), Positives = 117/468 (25%), Gaps = 47/468 (10%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 R + FP + I + + + + H + Sbjct: 510 MLDRKGITTPFPIQMQAIP--------ALLCGRDVIAIAPTGSGKTLAYLLPMVRHVMAQ 561 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 L L E+ G G + Sbjct: 562 PPLFFNE---GPIGLVIAPTRELALQI-NEQAEALCHAVNLKCACAYGGGIMGPQLSKLK 617 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P L D L + + + R TL E Sbjct: 618 AGCHILVATPGRLI-----DVLTLSNG---------KVTNLRRVSTVTLDEADRMFDMGF 663 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIE 424 + + A QT SAT + + + V G ++ Sbjct: 664 EPQISMVLRNINPARQTCMFSATFPPHVEGLARQSLYKPVEVVIGDSGSAATNVKQKVVV 723 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 VR + ++LL + + A +LV + + + L ++G LH D + Sbjct: 724 VRDEEERFNNLLKLLGEWADHGS-ILVFFTKQDDVDGMYMRLLDYGYACLTLHGGQDQQD 782 Query: 485 RMEIIRDLRLGE---FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R I D + + ++L+ ++ GLD+ V + +GR Sbjct: 783 RDGTIDDFKKRKPPPANILLATSVAARGLDVKHCICVINYTPP-----DHAEDYVHRVGR 837 Query: 542 AARNVN-GKAILYGDKI-TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK--VVDIL 597 R N G A + A + E + ++ + ++ +V Sbjct: 838 TGRAGNVGFAYTLINSSTEGEYASELVEVLKAASQEVPADLVTLAQNNQVSISAGLVAKK 897 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G + SR + +A ++ +L+ Sbjct: 898 RGGFGGRGFTFESSELSRNQQQRKVEMDKAKAEADGTRLDKLKKEEEA 945 >UniRef50_Q6APU7 Related to ATP-dependent RNA helicase (RhlE) n=1 Tax=Desulfotalea psychrophila RepID=Q6APU7_DESPS Length = 498 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 51/383 (13%), Positives = 107/383 (27%), Gaps = 37/383 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ E E V F + + ++ + L Sbjct: 118 TPIQ-EQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMARLLADKKGGLGKRT--PRALIL 174 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + ++L + T + + + + P L D+ Sbjct: 175 APTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELLKRGKTDIVVATPGRLIDFH 234 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL--AP 387 + + + I + M + + Sbjct: 235 NKRLVNFDNCQTLVIDEADRML-----------------DMGFIPDVRRIVSWMPKKRDR 277 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT + S VD V T ++ + + + + L + I+ Sbjct: 278 QTLMFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYNVLYNLIK 337 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +ER+++ K L + L+ + L D+ +R + R G+ VL Sbjct: 338 E--NSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKVKVL 395 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ G+ + +S V + IGR R GK++ + + Sbjct: 396 VATDVAGRGIHIDGISYVVNY-----TLPYEPEDYVHRIGRTGRAGLAGKSVSFACEEGS 450 Query: 560 SMAKAIGETERRREKQQKYNEEH 582 I E + EE Sbjct: 451 FYLPDIEEYIGAKLDCVLPPEEL 473 >UniRef50_Q11WD3 Possible ATP-dependent RNA helicase n=8 Tax=Sphingobacteriales RepID=Q11WD3_CYTH3 Length = 463 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 58/454 (12%), Positives = 130/454 (28%), Gaps = 37/454 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 + + + + I + + + + Sbjct: 16 LLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILMKI--KYAQGH 73 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + +++ + + + + G P ++L ++V Sbjct: 74 NPRAVIFGPTRELVMQIEIAMKQLAKYTD--LRIVALYGGIGPKLQKEHLQKGVDIIVAT 131 Query: 340 SHVTIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + L E + + K E Q + SAT Sbjct: 132 PGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQNLLFSATMSE 191 Query: 399 YELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + + + P LL + ++ R ++ Sbjct: 192 RVERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPNFKTKIHLLEYLIRKDESVTRAII 251 Query: 452 TTLTKRMAEDLTEYLEEHGER-VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 TK+ A+D+ +++ R +H++ D R+ + D + G +LV ++ G+ Sbjct: 252 FVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKILVATDVAARGI 311 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ EVS V D I IGR R + G AI + + + I + Sbjct: 312 DVHEVSHVINFDVPII-----YDDYIHRIGRTGRANHTGVAITFATEAEMYHIEKIEKII 366 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 R + ++ IT G ++ A+ + +P Sbjct: 367 RMQIPVEELPAAVEITETGFE------------ESQEFARELDFYKKKEDP------TYK 408 Query: 630 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A +K +L+G Q A A+ ++ Sbjct: 409 GAFHEKKRDLKGDAKQTAYKPGKSVKAKPSKEIR 442 >UniRef50_A9J0E5 DEAD box helicase n=2 Tax=Macrostomum lignano RepID=A9J0E5_9TURB Length = 929 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 49/374 (13%), Positives = 101/374 (27%), Gaps = 26/374 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV------LLEN 277 L ++ V I + + LA + Sbjct: 498 LRKYNYNKLTPVQKYGIPIILKGRDLMACAQTGSGKTAAFLLPLAKMIAELDTNDSTVAQ 557 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + T+ + + G L L ++V Sbjct: 558 YTTYPVALILTPTRELCNQIYDFARGFRAGTNIHAKRV-YGGPKTEYLRAELANGCHILV 616 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + ++ R L E L + + Q + SAT Sbjct: 617 ATPGRLKDFAERNIVSLNKTRLLVLDEADQMLDRGFMDSVTWTLDQMPSDRQIVMFSATF 676 Query: 397 GNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER- 448 N + + + + G + + + L+ ++ + + Sbjct: 677 PNQIQALAQQYLQNYLYLTVGQVGAANPDVTQEVREVQQDDKQAALIEILKHCRSDPSQA 736 Query: 449 ---VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +L+ +KR A+ + L + G +H D ER +R G ++V N+ Sbjct: 737 DDRILIFVESKRRADYVGLMLSDGGFPCTTIHGDRLQREREISLRSFLRGRLPIMVATNV 796 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK-ITPSMAK 563 G+D+ + LV +D IGR R GK+I + D ++A Sbjct: 797 SARGVDINGIELVINMDLPN-----DFDMYAHRIGRTGRCGNPGKSISFYDHGRDSALAL 851 Query: 564 AIGETERRREKQQK 577 + + + + Sbjct: 852 KLRQNLEKSGQSVP 865 >UniRef50_Q7Y183 DEAD-box ATP-dependent RNA helicase 10 n=110 Tax=Eukaryota RepID=RH10_ORYSJ Length = 472 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 56/466 (12%), Positives = 118/466 (25%), Gaps = 50/466 (10%) Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAES-----DDIALRVELFDEEVERLSLFDPLTGQIVS 236 A + TF G V ++ A + ++ E +E L Sbjct: 32 EAEPPARRPSTFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEG-RDLIGLGQTGSG 90 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN-KLLEEQRLTQRTQFDLE 295 F + + + + A E ++ ++ Sbjct: 91 KTGAFALPIIQALLKQDK--------PQALFACVLSPTRELAFQIGQQFEALGSAIGLSC 142 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 + G + S P L D+ + D + ++ Sbjct: 143 TVLVGGVDRVQQAVSLAKRPHIVVGTPGRLLDH-------LTDTKG---------FSLNK 186 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR- 414 + L E L +T SAT N + + + V Sbjct: 187 LKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLFSATMTNKVSKLQRACLRNPVKVE 246 Query: 415 ------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 L P + L+ + + +++ T L L Sbjct: 247 VASKYSTVDTLRQEFYFVPADYKDCFLVHVLNEL--PGSMIMIFVRTCESTRLLALTLRN 304 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 + + + +R+ + + + ++L+ ++ GLD+ V +V D Sbjct: 305 LRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVASRGLDIQGVDVVINYDIPM--- 361 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + + + +GR AR N G A+ ++ K I + +K + + + Sbjct: 362 --NSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFKMIEKLLGYEIPDRKVDNAEIMILR 419 Query: 588 GLNKKVVDILA----LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 I G K + K V Sbjct: 420 ERISDSKRIALTTMKEGGGHKKKRRKNEDDEEEEERNAPVSRKSKS 465 >UniRef50_B6HEA9 Pc20g02210 protein n=23 Tax=Leotiomyceta RepID=B6HEA9_PENCW Length = 692 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 50/389 (12%), Positives = 105/389 (26%), Gaps = 24/389 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 A++ + L + + F I + + + + + Sbjct: 162 YEHPTAVQSYAIPAVLANLDVI-AVAQTGSGKTGAFLIPILSKLM----GKARKLAAPRP 216 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A R + + + T+ + + G P Sbjct: 217 NTAERFNPREDAVRAEPLVLIVCPTRELATQIFDEARRLCY-RSMLRPCVAYGGAPSRQQ 275 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEE-- 381 + L +++ + + R R + E L S + K Sbjct: 276 REELQKGCDILIATPGRLLDFMAQTHVLSLRRVRYTVIDEADEMLESDWEEEFKKIMSGG 335 Query: 382 --FEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQ 431 E + + SAT + + + + V G I + Sbjct: 336 DVNEDADHRYMMFSATFNKEFRKLAKQYLNENHVRLRVGRAGSSHHNVVQDIIWADQPKK 395 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L + R L+ +K + + +YL G +H ER + +R Sbjct: 396 MRALYDLLISM--PPVRTLIFVNSKEQVDFVDDYLFNSGMPTTSIHGGRTQREREDAMRA 453 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R + ++V + GLD+ V V D + IGR AR G A Sbjct: 454 FRTAKCPIMVATGVSARGLDVVNVLHVINYDLPS-AIHGGITEYVHRIGRTARIGNEGIA 512 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYN 579 + + +A+ + + ++ Sbjct: 513 TSFYNDRDEGIAEDLVKILIECDQAIPEF 541 >UniRef50_B6AGA4 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AGA4_9CRYT Length = 939 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 100/370 (27%), Gaps = 16/370 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 +E + + I V + R Sbjct: 12 FSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQRLGCKH 71 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + L+ + L+ + + + + G F+ L + + Sbjct: 72 STIVGIRGLILSPTRELVLQTYRVVRKFAIKTD--IRICTLTGGSSLDRQFENLSGNPDI 129 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ I L E + L + + + Q I VSA Sbjct: 130 VIATPGRLCHHIVEAKLSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCILVSA 189 Query: 395 TPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T + S +V+ L I ++ LL +R NE Sbjct: 190 TMPTGLVSFSRAKLVEPEFIRLDSDHLISDTLKLIFIFTREDDKLATLLYLLRVTIPHNE 249 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 RV+V TK E L + L E + ++ ++D R + R + V++ ++ Sbjct: 250 RVMVFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVTDIAA 309 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+P + V D S + + GR R GKA + Sbjct: 310 RGLDIPLLENVINFDYPL-----SAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYTVDLM 364 Query: 567 ETERRREKQQ 576 R Sbjct: 365 LFLGLRVSTL 374 >UniRef50_Q4UPY5 ATP-dependent RNA helicase rhlB n=186 Tax=Gammaproteobacteria RepID=RHLB_XANC8 Length = 573 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 55/404 (13%), Positives = 107/404 (26%), Gaps = 25/404 (6%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE----LAAR 270 +L V L + + P + L R Sbjct: 15 DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + L + +++ + + + G + L Sbjct: 75 PALADRKPEDPRALILAPTRELAIQIHKDAVKFGA--DLGLRFALVYGGVDYDKQRELLQ 132 Query: 331 ADGLLVVDESHVTIPQIG--GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA-- 386 +++ I + + L E Sbjct: 133 QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGT 192 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + LE + + + + I + LL + Sbjct: 193 RQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLL 252 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + R +V TK E + LE HG RV L D+ +R ++ + G+ ++ Sbjct: 253 SR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEI 310 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GL + V V D + IGR AR G AI + + Sbjct: 311 LVATDVAARGLHIDGVKYVYNYDLPF-----DAEDYVHRIGRTARLGEEGDAISFACERY 365 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 I ++ + E + V+ + + Sbjct: 366 AMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDD 409 >UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=C5S9J5_CHRVI Length = 683 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 63/477 (13%), Positives = 128/477 (26%), Gaps = 52/477 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 P +++ + + ++ F + + + Sbjct: 28 GFTQCTPIQAETLPIALQ--------GHDIAGQAQTGTGKTAAFLVALMQRLLHEPPEAM 79 Query: 258 QAMEEIK----EELAARRKVLLENNKLLEEQ------------------RLTQRTQFDLE 295 + L+ LE + + T+ Sbjct: 80 PESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRGPRALVLAPTRELAV 139 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGD 354 +++ R + G D L A +++ I ++ Sbjct: 140 QIHKDTLALAKHTGLRS-TVVYGGTGYQQQRDELAAGVDILIGTPGRLIDYYKQHVFDLK 198 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI--YVSATPGNYELEKSGGDVVDQ- 411 R L E Q + SAT E + + Sbjct: 199 RIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSYRVTELAYEHMNHPR 258 Query: 412 ------VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + + + ++ LL IR + R++V TKR A+ + Y Sbjct: 259 LVKIETEQVTADRVRQVCYMTANEEKIPLLLGLIRGW--PDGRIIVFVNTKREADRVWGY 316 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L+ +G L D+ +R++++RD G VLVG ++ GL +P+V+ V D Sbjct: 317 LQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHIPDVTHVVNYDLP- 375 Query: 526 EGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + IGR AR G A+ + + I + + + + Sbjct: 376 ----EDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKVPVEPVDPALLA 431 Query: 585 TPQ---GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + D K + RG+ R + + S + + Sbjct: 432 EVDPRSRIRPDRADREERRDGRDKRGGRERGEGRGVQGRSSERDGASGRDRRPGRER 488 >UniRef50_C5SB31 DEAD/DEAH box helicase domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SB31_CHRVI Length = 454 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 69/502 (13%), Positives = 132/502 (26%), Gaps = 68/502 (13%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 A++R LA Y ++ ++ ++ + L Sbjct: 11 PDALMRGLANEGYTT-------------------------PTPVQAQVIPLAMDGVDLL- 44 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 F + ++ L L + RL Sbjct: 45 VSAATGSGKTAAFLLPIMQRFIDVPRHDGST-----RALILVPTRELARQIHIHFMRLGS 99 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 T+ + G + + + P L ++L + D + + + Sbjct: 100 YTR-LTSGVITGGESKAHQIATLRKNPEILVATPGRLLEFLETGQANLRDLEFLVLDEAD 158 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY-ELEKSGGD 407 M + L + Q++ SAT + + Sbjct: 159 RMLD-----------------MGFADDVLAIIRYSRPERQSLLFSATLEQRGLSQITERL 201 Query: 408 VVDQVVRPTGLLDPI---IEVRP-----VATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + D + I + + LL +R E+ L+ T T+ A Sbjct: 202 LRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLLRHE--TYEKALIFTNTREGA 259 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 L +L+ +RV LH ++D ER ++ L G + L+ +L G+D+P V V Sbjct: 260 VALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIATDLAARGIDVPGVQRVF 319 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + G + GR R G AI + ++I + ++ Sbjct: 320 NFDLPRRG-----DDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIARYLNLTFEPREI 374 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 + A K+ A K R + K + Sbjct: 375 EGLKASFKGPTKRNKPSKPAATSGKRKSTAAAEEKPRKKERLRD--RKNIGKRRVPTSAK 432 Query: 639 LEGLMMQHAQNLEFEEAAQIRD 660 + E A D Sbjct: 433 AQEAGHAPLTRRAREHAKPDAD 454 >UniRef50_C9RLD4 DEAD/DEAH box helicase domain protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLD4_FIBSS Length = 463 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 46/426 (10%), Positives = 102/426 (23%), Gaps = 50/426 (11%) Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y + ++ ++ P + I + + Sbjct: 32 YTFDMLPEEQKAILREHGWTELMPVQRKSIPYMLAA--------RDMLVQSKTGSGKTGA 83 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + V + L L E ++L++ T + Sbjct: 84 YALPLLQVIVRD--------HPYPQALILVPTRELCIQVQEEFEKLSKGTG-IKSVAIFG 134 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + + P L D++ + ++ + + + M Sbjct: 135 GVSYEPQIKALRSGVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEML--------- 185 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV--------DQV 412 K ++ A SAT + Sbjct: 186 --------SMGFYPDMQKIRKYLPKAISCTMYSATIPQTVKSLAREFQRPGADFLSLSYD 237 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 L+ V + + + E ++ KR L + L +G Sbjct: 238 KVIANNLEHRYYTCDVMEKDSMTIKVL--EYYNPESCMIFCNYKRDVSYLEQVLSGYGFE 295 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V L D+ R + + R + +L+ ++ G+D+ V+ V + D Sbjct: 296 VGALSGDVAQSLREKTLNAFRDKKLKILICTDVAARGIDVDHVTHVIVYDHP-----ADH 350 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + GR AR G I + + + I + + Sbjct: 351 EVYVHRSGRTARAGRSGLCISLITPVEEIDLRQTAVDFGINFIKMDPLTNEEIAKKVSER 410 Query: 592 KVVDIL 597 V + Sbjct: 411 TKVRLE 416 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 110/715 (15%), Positives = 209/715 (29%), Gaps = 108/715 (15%) Query: 7 LNSAFKPSGDQP------EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 L + P AIR + +TL+G IA++ ++ T Sbjct: 94 LEAPLHPLLKTLNQLSNWAAIRTAASAQPTERSARTLIGAVAGTHAALIADISTAVRDTT 153 Query: 61 -----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 +++AP A L ++ + P + P+ +T + S Sbjct: 154 AEALSLIIAPTDRQAEDLAAALRSYLPAADIAL-------------FPAWETLPHERLSP 200 Query: 116 NEHIEQMRLSATKAM---LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 RL +AM ++R VV+A V A+ + +HL G + + Sbjct: 201 RSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEPVHLVRGEEYPFKDV 260 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 +R L + Y+R D +RG + VRG +ID+FP + +R+E F +E++ + F Sbjct: 261 VRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQ 319 Query: 233 QI---VSTIPRFTIYPKTH-YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + T+ P +TP A + AA Sbjct: 320 RTLSGGEELTELTLLPCRELLITPEVMSRAARLKADYPAAAAM----------------- 362 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 LE + Y G+E+ + L E TL + LPA +++ E + Sbjct: 363 -----LEKIAGGIYVEGMESLTPLL-----IESMNTLTELLPAGSMIINVEPERVRARAE 412 Query: 349 GMYRGDRAR----KETLVEYG----------FRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + +T E S + ++ Sbjct: 413 DLVATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITE 472 Query: 395 TPGN-YELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 + LE + G + +Q + T ++ V+ +LS++ Sbjct: 473 LVTDADLLEDAAGALQNQNIADAIEDGIDTYTVNATPA-TAFNGSVERMLSQVGDLIRQQ 531 Query: 447 ERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLGEFD---VLVG 502 VL T + + L + G R + G+ + V V Sbjct: 532 WTVLALTNGRGSTDRLIDLFHSGEGAPAV-------PAARRTSLEADPAGKLEHGIVEVC 584 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA----RNVNGKAILYGDKIT 558 G + E L +A+ G + G A A+ Sbjct: 585 EAPASAGFLVEEAKLAVFTEAELLGRRGTYAP----RGAAGQKFKTRRRRNAVDPLALNP 640 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLN--KKVVDILALGQNIAKTKAKGRGKSRP 616 R + G+ K+ + I P Sbjct: 641 GDYVVHERHGIGRFVEMTSRPVAGASPVNGVQPMKEYLVIEYAPAKRGGAP---DRLFVP 697 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + D + + + + ++ G ++ + +I L +L A Sbjct: 698 SDQLDLISNYVGGE--NPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQA 750 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/480 (14%), Positives = 135/480 (28%), Gaps = 44/480 (9%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A + D + EL +E D LT P ++ + ++ Sbjct: 755 AFAADTPWQREL-EESFPYNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVR 813 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + + Q + E + R LS + Sbjct: 814 AAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPV------KIRVLSRFQKAKETRQ 867 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + + + + VV +H + + + + Sbjct: 868 ITEEIASGAVDVVIGTHRILSDSVVFKDLGLVIIDEE--------QRFGVEHKEKLKQMR 919 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ-VDDLLSEIRQRA 443 + +SATP LE S + + T + + V + + + IR+ Sbjct: 920 TNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREI 979 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V +D+ + + H + +II D FDVLV Sbjct: 980 MREGQVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLV 1039 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + + A G + L Q GR R + + Sbjct: 1040 CTTIVETGLDISNANTLIVDHAQNYGLSQ----LHQLRGRVGRGRERAYAYFLYPVD--- 1092 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K +GE R K + E G GL + D+ G + Sbjct: 1093 -KTLGEIAHERLKAVATHNELG---AGLQLAMKDLEIRGAGNLLGGEQSG-------HIA 1141 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE-------AAQIRDQLHQLRE-LFIAAS 673 V D+ + + + + G + + + I + +L+ IAA+ Sbjct: 1142 GVGFDLYLRLVGEAVANYRGEKEEREVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAAA 1201 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 90/668 (13%), Positives = 210/668 (31%), Gaps = 84/668 (12%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L+D + + G T + L + +++A N+ A Sbjct: 4 LVDIINNLRPFEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 + Y ++ P P D F+ S + + RL + Sbjct: 64 RKYYEDLFNISP--------------LRVLLYPEKDIFLYDRDSKSRDNLKTRLGTISKI 109 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V ++ A+ D++LK L L ID +++ +L ++ Y R Q Sbjct: 110 LTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEG 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI + R+ELFD E++ + F+ + + + I I+P Sbjct: 170 MGQFSIRGNIIDIATFSDN---YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDI 226 Query: 250 VTPRERIVQAMEEIKEEL-AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + A ++I+ E+ + ++ RL ++ + E Y + Sbjct: 227 LISEDDRLNAAKKIENEINKTKLSGERKD-------RLFEKFSLYKNRLVEDEYIQNPDL 279 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 FL+ + D++ D + +++E + + + + ++ +G L Sbjct: 280 IIPFLNEDKLSG----IIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEAL 335 Query: 369 PSA---LDNRPLKFEEFEALAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPII 423 PS ++ T+ T + Sbjct: 336 PSHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKS------------- 382 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +++ ++ + +V++ + + A+ L +L E V + Sbjct: 383 -ITNYRSKIKLFREDLDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF------KE 435 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + + +V + G + +V I A+ G + ++ Sbjct: 436 DRN---TEFAN---NFVVTTGSVNAGCEFALSKIVIINYAEIYGTYKEKKK--------- 480 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + KY + G+ + V I G + Sbjct: 481 -----PKRKKEKILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDK 535 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + D + + K+++L + + + + D L Sbjct: 536 LFLPIES---------LDLIYKYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLI 586 Query: 664 QLRELFIA 671 +L + Sbjct: 587 KLYAARES 594 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 64/467 (13%), Positives = 136/467 (29%), Gaps = 39/467 (8%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 + E D + + L+ +P + + ++ A Sbjct: 606 FQREFEDAFIYEETDGQLLS-SEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAIL 664 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + Q +E + GI + R + + L A Sbjct: 665 DGKQVAFLVPTTILAQQHYNIMVERFKDFPVEVGILSRFRTK------KEQKETIEKLKA 718 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + +V +H + + + R + + T+ Sbjct: 719 GIVDIVVGTHRLLSKDVVFKDLGLLIIDEE--------QRFGVRHKEKLKMLKENIDTLT 770 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINERVL 450 +SATP L+ S + D V + V + I + +V Sbjct: 771 LSATPIPRTLQMSMIGIRDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVERGGQVY 830 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E + L E V ++ + ++ + + + G+ DVL+ ++ Sbjct: 831 FVYNRVANMEYKLQELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIET 890 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+ + + I D+++ G + L Q GR R+ + + +I E Sbjct: 891 GMDVQNANTMIITDSNRLGLSQ----LYQLRGRIGRSSRVAYAYFTYEKD----VSISEI 942 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 ++R K K E G G + D+ G + DN+ D+ Sbjct: 943 AQKRLKTIKEFTEFG---SGFKIALRDLEIRGSGSILGSKQHG-------HIDNIGYDLY 992 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQ---IRDQLHQLRELFIAA 672 K L Q +++L+G+ + + + + R Sbjct: 993 MKYLTQAVNKLKGIETRETIETVIDLKIDSYIPKTYIEDERLRLEIY 1039 >UniRef50_C1I2P2 ATP-dependent RNA helicase DeaD n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2P2_9CLOT Length = 481 Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats. Identities = 57/429 (13%), Positives = 109/429 (25%), Gaps = 67/429 (15%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 IL+ L L + + + Q + I + Sbjct: 13 EEILKALKNLGFEKPSEVQQ------------------EVIPY--------ILDKKDLVV 46 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + F I E + L L + + R Sbjct: 47 KSQTGSGKTASFGIPLCELV--------NVEENKVKALILVPTRELAIQVKEDISNIG-R 97 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + P + D++ L + D V I + Sbjct: 98 LKKVRCAAIFGKQPFNEQIRELKQRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADK 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M ++ + + T SAT + Sbjct: 158 MLN-----------------MGFIDQITDVLDKLPQSKNTALFSATIPKEIEGLYSNYMN 200 Query: 410 DQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + V + + LL + +E ++ TK +L Sbjct: 201 NPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLLKSLYAF--TDESAIIFCNTKDSVRNL 258 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L++ V+ LH D+D +R+ + + + EF VLV ++ G+ + ++ V + Sbjct: 259 SSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFKVLVATDVAARGIHINHITNVFNYE 318 Query: 523 ADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + S + IGR+ R G AI K I E ++ E Sbjct: 319 VPI-----EKESYVHRIGRSGRGDKKGLAISLVSKGERRFLNEIEEYINYSIEEANLLEY 373 Query: 582 HGITPQGLN 590 I Sbjct: 374 EEIIEGRKR 382 >UniRef50_D1YEX7 DEAD/DEAH box helicase n=3 Tax=Propionibacterium acnes RepID=D1YEX7_PROAC Length = 700 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 49/404 (12%), Positives = 104/404 (25%), Gaps = 38/404 (9%) Query: 184 NDQAFQRGTFRVRGEVIDIFPA-----ESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 G F G +I A +D +++ + + + + Sbjct: 222 VTGIDHEGGFSALGVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRAS-TGSGKT 280 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 F + + + L L L ++ Sbjct: 281 LAFGVPLLSRLSATPREDNR-----PRALILSPTRELAMQIADVLSSLASSMG-LSTILI 334 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G G + + P L D L + + + + M Sbjct: 335 AGGMSYGPQTKAFKRGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELG---- 390 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + Q + SAT + + + V Sbjct: 391 -------------FMEAVGSILDAIPADGQRLLFSATLDGAVNKLVRRYMHEPVTHEVDP 437 Query: 419 LD---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + + + + + A + +V T+R A + E L E G Sbjct: 438 DKGSVATMTHHAFQIKPHEKVGLMCEIANRSGHTIVFARTQRGASRMAEQLREAGVMAGA 497 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH + R ++ + G VLV ++ G+D+ +V+LV +D + + Sbjct: 498 LHGGLTQGARARVLAAFKDGSLPVLVATDVAARGIDVDDVTLVLQVDPPM-----NFKDY 552 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + GR AR + G + + + + + Sbjct: 553 LHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVKPVEAQV 596 >UniRef50_Q55BR9 Probable ATP-dependent RNA helicase ddx49 n=1 Tax=Dictyostelium discoideum RepID=DDX49_DICDI Length = 508 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 54/435 (12%), Positives = 120/435 (27%), Gaps = 59/435 (13%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E+ + F I + + L Sbjct: 37 EILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVF--------AVILTPTRELAVQI 88 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVD 338 + + + ++ G + + P L +L + + Sbjct: 89 GEQFNAIGAPMNVNCSVVI-GGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKF 147 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + + D + + QT+ SAT Sbjct: 148 CKFLVLDEADRLLGEDFELEIASILEHLPP---------------PEKRQTLLFSATMTK 192 Query: 399 YELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 + + + L P T+ L+ +++ +V Sbjct: 193 NLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKH--EGSSAIV 250 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E + L + LHS +D R+ ++ + G+ VLV ++ GLD Sbjct: 251 FVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLD 310 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 +P+V +V S + I +GR AR +G+AI + S+ K I E + Sbjct: 311 IPDVQIVINY-----KLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGIEEIIK 365 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 ++ + K +++ + + D + + K Sbjct: 366 KQLELYKTDDDEV---------FRHLKEASTARKIVEI----------HLDEIEFGVKQK 406 Query: 631 ALQQKIHELEGLMMQ 645 + + +EL+ + + Sbjct: 407 ERRTERNELQKQLKE 421 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 69/379 (18%), Positives = 112/379 (29%), Gaps = 41/379 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + E +++ L F + H +T +A Sbjct: 20 FTKATDVQQQTIPEALKQQDLM-VCARTGSGKTAAFVVPMLQHLLTH-----KAPNSGTR 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L L + Q L + T M G + + P L Sbjct: 74 ALILVPTRELAKQLLKQCQALAKFTG-IQSGMITGGQEFKFQAALFRKNPEIIIATPGRL 132 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE-- 383 D+L L+ D + + + M L + L Sbjct: 133 IDHLKQKKDLMEDVEYFILDEADRM-----------------LDMGFEEDVLTIANACSG 175 Query: 384 ALAPQTIYVSATPGNY-ELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDL 435 PQT+ SAT D ++ + + Sbjct: 176 KAKPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRI 235 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L+ + + ++ T TK E +L H V YLH D+ ER ++ +R G Sbjct: 236 LTWLLSN-EEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNG 294 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYG 554 F VLV ++ GLD+ + LV D RS + IGR R +G AI Sbjct: 295 RFKVLVATDVAARGLDIQSIDLVINFDM-----ARSGDDYVHRIGRTGRAEASGSAISLI 349 Query: 555 DKITPSMAKAIGETERRRE 573 D ++ AI R Sbjct: 350 DHTEWNLKAAIERYLRVNM 368 >UniRef50_A5E058 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Lodderomyces elongisporus RepID=PRP5_LODEL Length = 994 Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats. Identities = 60/467 (12%), Positives = 122/467 (26%), Gaps = 47/467 (10%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 VI + ++ + V + + + H + Sbjct: 400 SVIQNDLGFAKPSPIQCQAIP-IVLSGRDMIGVAKTGSGKTLSYVLPMVRHI--QDQLFP 456 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + E L L E T G + Sbjct: 457 KPGEGPIG-LVLSPTRELALQIEKE-ILKFSSTMDLKVCCCYGGSNIENQISELKRGVNV 514 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D L A+G G + R L E + + Sbjct: 515 IVATPGRLIDLLAANG--------------GRITTLRRTTFVVLDEADRMFDMGFEPQIQ 560 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVAT 430 K QT+ SAT + + + + + G + I + Sbjct: 561 KIFTQIRPDKQTVLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTD 620 Query: 431 --------QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 +++D+LS +VLV + A+ L L + +H D Sbjct: 621 QLMNHKIQKLEDILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQ 680 Query: 483 VERMEIIRDLRLGE--FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++R IR+ + +VL+ ++ GLD+ + LV + + +G Sbjct: 681 IDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSH-----LEDYVHRVG 735 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 R R G+AI + D + + + + + + KK+ Sbjct: 736 RTGRAGKHGEAITFVDNTQEKEISILVKALK--MSSRAVDSKLQEIADKFMKKIESGEEK 793 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLM 643 + K + ++ + ++ +L + Sbjct: 794 RSSGFGGKGLEKLQNVRETNMQLQKKMFGNFKKEDGKKSHRDLSEQV 840 >UniRef50_A6DHU9 DEAD/DEAH box helicase-like protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHU9_9BACT Length = 412 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 117/397 (29%), Gaps = 37/397 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ ++ + ++ + F+ T + + Sbjct: 21 FSEATDIQAKAIP-LIQEGKDLLAESQTGTGKTLAFSFPLIERINTLPPKKKKISILG-- 77 Query: 266 ELAARRKVLLENNKLLE-EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + G + + P Sbjct: 78 -LVLVPTRELALQVEKAFTNYAEFSLRPIKTATLIGGENIDGQIRKLRMGLDVLIATPGR 136 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + + + +V+ + + + M + + E Sbjct: 137 IIELINLGEVRLVELEMLILDEADKMLDLG-----------------FADELKELLEALP 179 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLS 437 Q + SAT + + + V ++ + + L Sbjct: 180 KKRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQVLQK 239 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + ++ +KR A +L L++ G + + H D+ ER+++++ + +F Sbjct: 240 LFKDE--QWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDF 297 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 +L+ ++ G+D+ ++S V D RS + IGR R G AI + + Sbjct: 298 PILIATDIAARGIDISKLSHVINYDLP-----RSPMDYVHRIGRTGRAGQKGVAISFINP 352 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 T K I + + ++++ ITP + + Sbjct: 353 ATEDHFKTIQKQAGIKLEKERIEGFDQITPVEVKQAK 389 >UniRef50_C3XZX1 Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XZX1_BRAFL Length = 655 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 124/401 (30%), Gaps = 38/401 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTG--QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ FD + +D +T F+I ++ +++ + + Sbjct: 114 FPVQYSTFDFVYDG---WDVITQARTGTGKTLAFSIPLVERL----QKDGVSIKRGRAPV 166 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 E + E + T+ G +N + P + D Sbjct: 167 VIVLAPTRELAIQVYEDFKSISTK-LTSFCVYGGTPYPPQNDAINRGLDILVGTPGRIQD 225 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ + L + + HV + ++ M + + ++ ++ P Sbjct: 226 HVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEA-----------AYKKDDKSQNP 274 Query: 388 QTIYVSATPGNYELEKSGGDVV-DQVVRP---------TGLLDPIIEVRPVATQVDDLLS 437 QT++ SAT N+ E + + + ++ + + + Sbjct: 275 QTLFFSATLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIAD 334 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + + R +V TK+ A L + + LH DI +R ++ R G Sbjct: 335 IITMYSGQHGRAMVFCETKKEANQLVLE-GVLKQEAQVLHGDIPQAQRELTLKSFRDGNI 393 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+PEV LV + S I GR R G + + Sbjct: 394 QVLVATDVAARGLDIPEVDLVVQCEPP-----SDVDSYIHRSGRTGRAGRTGVCVCFYKP 448 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + + + +Q + I N I Sbjct: 449 NREQDLRFVERRAGIKFRQINAPQPDDIVKAAANDSARAIE 489 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 106/692 (15%), Positives = 207/692 (29%), Gaps = 123/692 (17%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + L+ + L +T ++ + P +++ A + E+ F Sbjct: 7 IQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARELLFF 66 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM---------- 130 + V P+ +T + S + RL+ + Sbjct: 67 GAQRGVH-----------ILPFPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPIS 115 Query: 131 ----LERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 L VV+ + +AI P + + +VG ++ L Y Sbjct: 116 IGNELGDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVS 175 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q + G + RG +ID+FP D+ +RVELF +EVE + LFDP + + IP + P Sbjct: 176 QVSEPGEYAARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLP 234 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I +E + +++ G Sbjct: 235 VREVILNADTISCFRTAYREVFGGYAAE-----------------DLIYKEISQNRTYQG 277 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKETLV- 362 +E Y TLFDYLP L ++ D + + + R + Sbjct: 278 MEQYLPLFYPDL-----DTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAYQAGQG 332 Query: 363 --------EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 + L + E PQ + SAT D + Sbjct: 333 NEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQ-LLQSATGKPAL---------DLDLH 382 Query: 415 PTGLLDPIIEVRPVATQ---------VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 P + ++ + Q +D L +I R+ + T E + E Sbjct: 383 PIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERMREL 442 Query: 466 LEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L +H V S + + + + L+ ++ +G + P +V I + Sbjct: 443 LTDHKVSVVDGSSWSALLQADPRQPM----------LLLGDV-SDGFEHPTRHVVLISED 491 Query: 524 DKEGF----LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + G + R + + + D + R Sbjct: 492 NVFGVRIRRRQISRRYL----------DQLIASFADLNEGDAVVHVDHGVGRF------- 534 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 G + + A G P+ D V S + +Q + +L Sbjct: 535 --------GGLVSLEVGQLKNDFLLIIYADGDKLYVPVENLDRVGKHSSGEEVQ--LDKL 584 Query: 640 EGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 G + ++ ++ ++L ++ A Sbjct: 585 GGKRWAKTRAKARKKILEMAEELVAIQAQREA 616 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 53/434 (12%), Positives = 121/434 (27%), Gaps = 35/434 (8%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F D + V + ++ A Sbjct: 630 QEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVCGDVGFGKTEVALRATFRAAMDGK 689 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q + + + GY ++ SRF + + + + + Sbjct: 690 QVAILVPTTILAQQHYENFAKRLA--GYPIKVDILSRFRTPKEQKAT----IEAVGHGTI 743 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ +H + + + + + ++A Sbjct: 744 DVIVGTHRLLQTDVKFKDLGLLVVDEE--------QRFGVSHKERIKNLRATLDILTLTA 795 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 TP L + V D + + D + I + I + +V Sbjct: 796 TPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELYRGGQVFYVH 855 Query: 454 LTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 + E + + E RV H + + +++ + F++LV ++ G+D Sbjct: 856 NQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVCTTIVENGVD 915 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 +P + + I ADK G + L Q GR R+ + + + + + Sbjct: 916 IPTANTIIIDRADKFGLAQ----LHQLRGRVGRSKHRAYAYMLVPH----LRRLTKHAEK 967 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + + E G G D+ G + + V ++ + Sbjct: 968 RLEALESLGELG---AGFMLATHDLEIRGAGNILGDEQSG-------QIKEVGFELYNQM 1017 Query: 632 LQQKIHELEGLMMQ 645 L++ + L+ Q Sbjct: 1018 LREAVVALQTARAQ 1031 >UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D361_PARTE Length = 813 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 55/383 (14%), Positives = 115/383 (30%), Gaps = 42/383 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ +F +E + + + H Q Sbjct: 453 TTPTPIQKAIFPLILEG-RDVIAIAETGSGKTLAYALPGIIH------SQAQPKVLGPRI 505 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + + T G ++ G Sbjct: 506 LVLAPTRELAQQIQSQYELFT------RTCCVYGGVFKNLQ------YSEILGIKESRNK 553 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +++ + + + + L E L +++ + Sbjct: 554 INL---PSVIISTPGRLLDFMKDGLPLNSITQVVLDEADRMLDMGFEDQITQILSAVRDD 610 Query: 387 PQTIYVSATPGNYELEKSGGDVV-DQVVRPTG--------LLDPIIEVRPVATQVDDLLS 437 QT++ SAT N + D ++ G + + + + + Sbjct: 611 RQTLFFSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVY--ENKFEKFA 668 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ R +++L+ K + L L HG + RYLH D+ ER +I+ + + G Sbjct: 669 ELTDRLK-GQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAI 727 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 + L+ NL GLD+ +V +V D + I IGR R G+AI + Sbjct: 728 NCLITTNLASRGLDVSDVDVVINYDFP-----DTIEDYIHRIGRTGRAGKKGQAISLLEP 782 Query: 557 I--TPSMAKAIGETERRREKQQK 577 + + + ++ ++ Sbjct: 783 AFFNNRLKNDLVQVLQQSDQVIP 805 >UniRef50_Q11UI8 DEAD box-related helicase (ATP-dependent RNA helicase) n=6 Tax=Sphingobacteriales RepID=Q11UI8_CYTH3 Length = 437 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 66/465 (14%), Positives = 134/465 (28%), Gaps = 43/465 (9%) Query: 192 TFRVRGEVIDIFPA--ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 F ++D + + ++ E + S + + Sbjct: 5 DFNFNSGLLDSLSSMGFNKPTPIQTEAIP-VIMSNSDLVACAQTGTGKTAAYMLPILHKI 63 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC---SGI 306 + + L L ++ + G Sbjct: 64 IESNTDSLDT-------LVLVPTRELAIQI-DQQIEGFSYFINVSSIAVYGGGDGATWDQ 115 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + + P L L + + H+ + + Sbjct: 116 QRKALTDGANIVIATPGRLLAQLQSGTANLKQIKHLVLDEADR----------------- 158 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----- 421 L + ++ + QTI SAT + + D + P Sbjct: 159 MLDMGFYDDIVRVISYLPTERQTIMFSATMPTKMRALANKLMKDPQQINIAISKPAEGIL 218 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 Q + L+ I N +++ + TK + L L G ++ HSD++ Sbjct: 219 QQAYLVYEEQKNKLIKHILSSGNFNS-IIIFSSTKEHVKKLERDLSNMGFSLKGFHSDLE 277 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-G 540 ER EI+R + + +L+G ++L G+D+ + LV + + I I Sbjct: 278 QEEREEIMRAFKSRQLQMLIGTDILSRGIDIDGIDLVINAEVP-----GDAENYIHRIGR 332 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A G AI + I R ++ K E G P +K G Sbjct: 333 TARAATTGTAITFISDTDQYKFLQIENLIGREIEKLKIPIEIGEGPAYEPEKKPKYNNKG 392 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + K+K+ +G +RP + + P+ P ++ I + + + Sbjct: 393 FSNNKSKSGSKGSNRPTPKEHSKPVHREPSGIKHTIVKKQNPPQE 437 >UniRef50_A9UTS4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTS4_MONBE Length = 787 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 57/478 (11%), Positives = 125/478 (26%), Gaps = 40/478 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + F I R+ Sbjct: 22 YKVPTPIQRKTIP-LLMAGQDVVAMARTGSGKTAAFLIPLFERLKNHSARVG------IR 74 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + R ++ G + + P Sbjct: 75 ALVLSPTRELALQ-TFKFVKELGRFSDLRSILILGGDSMDSQFGDMHTNPDIVVATPGRF 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L +V +V + ++ + + Sbjct: 134 LHLIVEMELSLVTTEYVVFDEADRLFE-----------------MGFAEQLREIMARLPD 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIE---VRPVATQVDDLLSE 438 QT SAT ++ + + + + T L + + + LL Sbjct: 177 TRQTTLFSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQTQFFHCRREDKPALLLYA 236 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R+ + ++ TK E L E L + Y + +D R + R G+ Sbjct: 237 LREIIPKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSLDPTARKINVAKFRNGKAP 296 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 +L+ ++ G+D+P + V D + + + +GR AR G A + Sbjct: 297 ILLVTDVAARGIDIPMLDYVINYDFP-----AAPKLFVHRVGRVARAGRSGTAYSFIGND 351 Query: 558 TPSMAKAIGETERRREK-QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + R+ K K ++ G + V + K +S Sbjct: 352 ELPYVVDLHVFLGRKFKPALKRSKREEDGLFGAVPQSVLDEDREAVESHLKGSVDLQSLH 411 Query: 617 IVEPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 V ++ + + + + L E ++I + + A S Sbjct: 412 KVMINSYKNYDRSRPQAATESVKRSKQVEEIGYQLHPEFLSRIATGELEKETVLKALS 469 >UniRef50_D1HEC3 Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=4 Tax=Eukaryota RepID=D1HEC3_VITVI Length = 786 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 56/398 (14%), Positives = 112/398 (28%), Gaps = 18/398 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + I V + R Sbjct: 32 LGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLERL-K 90 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + L+ L+ + + + L G+ + F+ L + Sbjct: 91 QHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLL--VGGDSMESQFEELAQNP 148 Query: 334 LLVVDESHVTIPQIGGMYRGDR--ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +++ + + + E + K + QT+ Sbjct: 149 DIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTLL 208 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 SAT + E + + D + L ++ LL IR++ + Sbjct: 209 FSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIREQIS 268 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +++ L+ TK E L E G + D+D R I R + +L+ + Sbjct: 269 SDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIVTD 328 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + G+D+P + V D + + +GRAAR G A + Sbjct: 329 VAARGIDIPLLDNVVNWDFP-----PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLL 383 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 + + + EE P + K+ I+A G Sbjct: 384 DLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGG 421 >UniRef50_Q4MZI4 ATP-dependent RNA helicase, putative n=1 Tax=Theileria parva RepID=Q4MZI4_THEPA Length = 894 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 59/422 (13%), Positives = 114/422 (27%), Gaps = 36/422 (8%) Query: 181 YARNDQAFQRGT-----FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 Y + G FR I + + F + + L + Sbjct: 381 YVQVSSITNMGEHEVDAFRKANGNIRV---YGKKCPRPISSFSQCGLPDPILKILEKREY 437 Query: 236 ST---IPRFTIYPK---THYVTPRERIVQAMEEIKEE--LAARRKVLLENNKLLEEQRLT 287 I I + E + L + + + Sbjct: 438 EKPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPGIRHVLDQPPLRESDGMIVLIIA 497 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 + +++ NE S + G + L +VV I + Sbjct: 498 PTRELVIQISNECAKFSK--SVGLRTLAVYGGAGIGEQLNALKRGAEIVVGTPGRLIDVL 555 Query: 348 ----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 G + R L E + QT SAT Sbjct: 556 TLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRPDRQTALFSATFPLMIENL 615 Query: 404 SGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + +V + G +D + V ++ LL + + +++ T+ Sbjct: 616 AKKILVKPLQIVVGQRGKSASQVDQHVVVLNDDKKLLKLLKLLGEWHEHGN-IIIFVNTQ 674 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 +E L L +G LH +D +R + D R G+ +L+ ++ G+D+ V Sbjct: 675 LESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKKTILIATSIAARGIDVKSVV 734 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 LV A + +GR R G + + + + I + R ++ Sbjct: 735 LVINYAAP-----DHFEDYVHRVGRTGRAGTIGTSYTFLTPEEAAKSHDIIKALRLASQE 789 Query: 576 QK 577 Sbjct: 790 VP 791 >UniRef50_Q9SA27 DEAD-box ATP-dependent RNA helicase 36 n=14 Tax=Eukaryota RepID=RH36_ARATH Length = 491 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 50/443 (11%), Positives = 107/443 (24%), Gaps = 57/443 (12%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ ++ L F + + L Sbjct: 80 KPTPVQTHCVP-KILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVF--------AL 130 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E+ + + G + S P + Sbjct: 131 VVTPTRELAFQLA-EQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKV 189 Query: 328 YLPADGLL---VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L + + + + + + + + Sbjct: 190 LLENNPDVPPVFSRTKFLVLDEADRVLDVG-----------------FQDELRTIFQCLP 232 Query: 385 LAPQTIYVSATPGNYELEK------------SGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 + QT+ SAT + + + L + Sbjct: 233 KSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLK-----TVDTLTQQFIFEDKDAKE 287 Query: 433 DDLLSEIRQRAAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L+ + Q ++ T R + L+ L+E +HS R+ + Sbjct: 288 LYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSK 347 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + G+ +L+ ++ GLD+P V LV D R R + +GR AR G A Sbjct: 348 FKSGKVPILLATDVASRGLDIPTVDLVINYDIP-----RDPRDYVHRVGRTARAGRGGLA 402 Query: 551 ILYGDKITPSMAKAIGETERRREKQQ-KYNEEHGITPQGLNKKVVD--ILALGQNIAKTK 607 + + + I E ++ + K + ++K + L Sbjct: 403 VSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKV 462 Query: 608 AKGRGKSRPIVEPDNVPMDMSPK 630 R R + + + Sbjct: 463 KDRRKLKRKTLADKGLLKKRGKR 485 >UniRef50_C0NLV0 DEAD-box protein n=5 Tax=Eurotiomycetidae RepID=C0NLV0_AJECG Length = 615 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 58/419 (13%), Positives = 113/419 (26%), Gaps = 39/419 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM----- 260 ++ V + + F I + + +++ Sbjct: 152 YKVPTPIQAYAIP-AVLTGNDLIAVAQTGSGKTAAFLIPVLSKLMGKAKKLAAPRPDLGN 210 Query: 261 ---------EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 L L E +RL + G + + Sbjct: 211 GFNESLDCVRAEPLVLIVAPTRELSTQIFDEARRLC-YRSMLRPCVVYGGGPTREQRLEL 269 Query: 312 FLSGRGPGEPPPTLFDYLPADGLL-VVDESHVTIPQIGGMYRGDRARKETLVEYG----- 365 P L D++ +L + + + + M D + + + G Sbjct: 270 QKGCDVLIGTPGRLLDFMEKPHILSLHRVKYTIVDEADEMLHSDWETELSKLMSGGGTYT 329 Query: 366 ---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTG---- 417 + + + + E + + SAT E + + D V G Sbjct: 330 KQARIITECRNFLTMSIDTNEDADHRYMMFSATFNKSCRELARKFLAADHVRIRIGRAGS 389 Query: 418 ---LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + I + L + R LV TK A+ + +YL G Sbjct: 390 AHLNVSQNIVYAEDHLKKQALYDLLISM--PPSRTLVFVNTKAQADLIDDYLYNMGLPST 447 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +HSD ER + +R + + ++V + GLD+ V V D Sbjct: 448 SIHSDRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPS-ATHGGIEE 506 Query: 535 LIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQK-YNEEHGITPQGLN 590 I IGR AR G A + + +A + + ++ + E + Sbjct: 507 YIHRIGRTARIGNEGLATSFYNHDRNSDIAADLVKILLECKQPLPDFLESEKPEGDDVR 565 >UniRef50_Q0UN57 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=2 Tax=Pleosporineae RepID=PRP5_PHANO Length = 1184 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 70/468 (14%), Positives = 135/468 (28%), Gaps = 38/468 (8%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELA--ARRKVLLE 276 + + +F + + I I + + + + L+ Sbjct: 554 QTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLK 613 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL-L 335 L + L+++NEL + G+P + G+ + Sbjct: 614 PADGPIGLILAPTRELSLQIVNELKPFLNAS--GITIKCAYGGQPISDQIAMIKRGGIHI 671 Query: 336 VVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + I + + R L E + + +K QTI Sbjct: 672 LCATAGRLIDLLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDRQTIL 731 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP--VATQVDDLLSEIRQR 442 SAT + + G + I + P ++ LL + Q Sbjct: 732 FSATFPKTMAALARKALDKPAEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHHLGQT 791 Query: 443 --AAINERVLVTTLTKRMAEDL-TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 N +VL+ T + AEDL ++ + V +H D +R E I + + G ++ Sbjct: 792 FSDDENAQVLIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEFKQGLLNI 851 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG-DKI 557 L+ ++ GLD+P ++LV D + GR R G A+ + Sbjct: 852 LIATSVAARGLDVPGLALVYNFDCPTH-----LEDYVHRCGRTGRAGNKGLAVTLIENPG 906 Query: 558 TPSMAKAIGETERRREKQQKY------NEEHGITPQGLNKKVVD-ILALGQNIAKTKAKG 610 A I + + + N H G K G + Sbjct: 907 QERFAVHIVKALKESGAEVPDDLQAMANAFHEKVKSGTEKYYNVGFKGKGLDELDASRAL 966 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 K + K+ + E A++ + AA+ Sbjct: 967 DKKREKRALKLGDDDASDDEPDLPKLKKPEASGPGVAKSTNGDAAAEP 1014 >UniRef50_A1IIT5 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT5_9PLAT Length = 634 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 50/400 (12%), Positives = 108/400 (27%), Gaps = 38/400 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE--- 262 + ++ + F + + P + V + Sbjct: 226 YAVPTPVQR-FLLPVLLAGRDALATAQTGSGKTAAFMLPILKTVLDPSKGPVLGVAADGK 284 Query: 263 -IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L L E + T + G + Sbjct: 285 PAPRAIVVVPTHELAQQILFEGMKFATGTS-VRVHLTHGGVNVRHDLMQLRSGVSVLVAT 343 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L ++ + + + + + + + + + LP Sbjct: 344 PGRLLHFIRSGLISLSMCNFIVLDEADRLLDEGFEGEMREFLEHEDLPPR---------- 393 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDD 434 Q + +SAT + + + D + G ++ I P + D Sbjct: 394 ---ETRQVVMLSATFEDEVRDLGMSLLADPITVTVGVVGVPPGSINQEIIAVPNGDKHDK 450 Query: 435 LLSEIRQRAAINER------VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 LL ++ ++ ++V +R A+ + L L ++ +ER E Sbjct: 451 LLELLKTDIDNYKQNNVLKKIIVFVERRRTAQQVASALSMEEVPAVELQGELSQMERDES 510 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + R G+ VLV + GLD+ V V D + IGR R + Sbjct: 511 MHRFRYGDAFVLVATAIAARGLDIVGVDHVINYDLPSH-----IYEYVHRIGRTGRVGHL 565 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 G+A + D + + ++ + E + Sbjct: 566 GRATSFFDSDSSNDSRIAPKLVEAFEATGVEVPDFLKEAS 605 >UniRef50_B8C8J5 DEAD/DEAH box RNA helicase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C8J5_THAPS Length = 663 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 112/412 (27%), Gaps = 41/412 (9%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV-ERLSLFDPLTGQIVSTIPRFT 242 G +++ ++ +++ V + F+ Sbjct: 213 PPPIRSFGDMAFPPPIMEALKKKNVKRPTPIQMQGLTVALSGRDMVGIAFTGSGKTLSFS 272 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF---------D 293 + E + + + E + E T Sbjct: 273 LPLV--MAALEEEARMPLVPGEGPVGIVLAPSRELARQTYEVVTEFCTALTESGGRYPSI 330 Query: 294 LEMMNELGYCSGIENY-SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + G + + R P L D+L + + ++ + + M Sbjct: 331 RSQLLIGGESARDQLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLD 390 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D + QTI SAT + + +V V Sbjct: 391 L-----------------GFDEEVGEIMNHFHHQRQTILYSATFPKKFQDFAKQTLVRPV 433 Query: 413 VRPTGLLDP----IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 V G +I+ Q ++ + V++ K +D+ EYL Sbjct: 434 VVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTAPPVVIFCEKKGDVDDIHEYLLL 493 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +H D ER E I + G+ DVLV ++ +GLD ++ V D Sbjct: 494 KGVEAVSIHGGKDQEERNEAIALYKAGKKDVLVATDIAAKGLDFADIQHVINFDMP---- 549 Query: 529 LRSERSLIQTIGRAAR-NVNGKAILYGDKI-TPSMAKAIGETERRREKQQKY 578 + + IGR R G A + +K + + + ++ Sbjct: 550 -SEIENYVHRIGRTGRCGKTGVATTFINKSCEETTLLDLKHLLKEAHQRIPP 600 >UniRef50_A9V7B8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V7B8_MONBE Length = 592 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 101/371 (27%), Gaps = 38/371 (10%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + F++ + + I + A E + Sbjct: 186 SGRDMIGIAFTGSGKTLAFSLPAL--MLALDQEIKMPFVGGEGPFAIIMAPSRELARQTY 243 Query: 283 EQRLTQRTQFDLE-------MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + E M+ G P L D L + Sbjct: 244 DVLIEFTDALAKEGYPQLGIMLCIGGLSMQEVMERCQNGVHIAVCTPGRLIDVLGKKRIT 303 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + M ++ + QT+ SAT Sbjct: 304 LDVCRYFCLDEADRMVD-----------------MGFEDDIRTIFSYFKGQRQTLLFSAT 346 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD-----PIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + +V V G +I+ ++ + V+ Sbjct: 347 MPTKVKDFAASALVKPVTVNVGGRAGAASLDVIQEVEYVNPDSRVVYLLECLQKTPPPVM 406 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + + K+ +D+ EYL G +H D ER ++ + G DVLV ++ +GL Sbjct: 407 IFSEKKQDVDDIHEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVATDIASKGL 466 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI-TPSMAKAIGET 568 D P++ V D + + IGR R+ G A + + + + Sbjct: 467 DFPDIKHVINFDMP-----EELENYVHRIGRTGRSGKTGLATTFVSDMVPMTTLLDLKYL 521 Query: 569 ERRREKQQKYN 579 + ++ Sbjct: 522 LKEARQRIPPF 532 >UniRef50_C7RAU7 DEAD/DEAH box helicase domain protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAU7_KANKD Length = 458 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 94/358 (26%), Gaps = 38/358 (10%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + F + + + R L L Sbjct: 37 ILDGHDVMVSAETGSGKTAAFLLPIIHNLLENPSRHTSTRV-----LILAPTRELARQID 91 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + LTQ T + G + + P + ++ G + D Sbjct: 92 KHARDLTQFT-QIKTGLIIGGADYKYQQAIFRDNPEIIIATPGRMLEHCEKQGADLNDLE 150 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-PGNY 399 ++ I + M+ + F QT+ SAT Sbjct: 151 YLVIDEADKMFE-----------------MGFTDDVQAIAGFCKSDRQTLLFSATLKTKG 193 Query: 400 ELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + + ++ I + L + + +V Sbjct: 194 IKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWLLTN-EEYRKAIVF 252 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK + L + H LH DI R ++ R + VL+ ++ G+D+ Sbjct: 253 CNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIASDVAARGIDV 312 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 ++ LV D + I IGR AR GKA+ ++ I + Sbjct: 313 KDIDLVINFDM-----AHNAEDYIHRIGRTARAGETGKAVSLISHREWNLMVTIEKAI 365 >UniRef50_A4V6M8 Nucleolar RNA helicase II/Gu protein (Fragment) n=2 Tax=Dugesia japonica RepID=A4V6M8_DUGJA Length = 627 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 59/479 (12%), Positives = 133/479 (27%), Gaps = 45/479 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++++ F + F + T ++ + + Sbjct: 68 FPIQIKTF-HHIHTGKDVIAQAKTGTGKTFAFALPVLTKLENSGIDGLK-SGRKPKVIVM 125 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + + L + + G + + P + D + Sbjct: 126 APTRELVSQIASDFESLIS--KNLKVLSIYGGVSYEKQTTALKNGVDIIAGAPGRVRDLI 183 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + +V + ++ M + + E + PQT Sbjct: 184 NKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIYPS-----------ETDKKGPQT 232 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT-----------GLLDPIIEVRPVATQVDDLLSE 438 + SAT N+ + ++ + P + + Sbjct: 233 LLFSATMPNWIHNIVKKYLK-PDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIPDI 291 Query: 439 IRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 IR N+ R ++ K+ A++L + LH D+ +R +++ R G++ Sbjct: 292 IRVHGGGNQARCIIFCERKKDADELASH-SAMKSDCHVLHGDVPQEKRELVLKKFREGKY 350 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV N+ GLD+P++ LV + I GR R G I + + Sbjct: 351 SVLVTTNVAARGLDVPDIDLVIQCHPP-----KDVEDYIHRSGRTGRAGRKGVCICFYEP 405 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + + K+ I LN + K+ + +S Sbjct: 406 KEKYDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIE--------AFKSIPETVCESFK 457 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH--QLRELFIAAS 673 + + KA+ + ++ G + + + F + Sbjct: 458 ESAIKLIEQFGAEKAMALALAKISGKVEELKNRSLLSSMEGFTTYMLTTNDEIKFKGYA 516 >UniRef50_P23394 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=7 Tax=Saccharomycetaceae RepID=PRP28_YEAST Length = 588 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 57/382 (14%), Positives = 113/382 (29%), Gaps = 36/382 (9%) Query: 208 DDIALRVELFDEEVERL--SLFDPLTGQIVSTIPRFTIYPKTHY-VTPRERIVQAMEEIK 264 ++ F + F I +P + + Sbjct: 196 SPTPIQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGP 255 Query: 265 EELAARRKVLLENNKLLEEQRLT-----QRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L L E Q++T + + G+ ++S Sbjct: 256 KALILAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILV 315 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D L L++ + + + M + T + Sbjct: 316 ATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKV-----------DI 364 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQV 432 A+ QT+ +AT + + G + V G L+ ++E Sbjct: 365 NADSAVNRQTLMFTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDK 424 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRD 491 L I + +++ K+ A+ L E ++ +V LH +R ++ Sbjct: 425 FKKLKPIVAKYDPP--IIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQL 482 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R + +++ N+ GLD+P VSLV + I IGR R G A Sbjct: 483 FRTNKVQIMIATNVAARGLDIPNVSLVVN-----FQISKKMDDYIHRIGRTGRAANEGTA 537 Query: 551 ILYGD-KITPSMAKAIGETERR 571 + + S+ + + + R+ Sbjct: 538 VSFVSAAEDESLIRELYKYVRK 559 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 112/674 (16%), Positives = 205/674 (30%), Gaps = 79/674 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F + P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELSFFTGGDEQL----------PVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 RL + R ++V ++ + L L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP SD + R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGSD-LPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + P + + I ++ E K ++ Sbjct: 244 EKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKECPVFQD-----------------IS 286 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+E Y + LFDYLP + L+ + + + R Sbjct: 287 AGISPPGVEYYLPLFF-----DSCSNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYES 341 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + LP + + L Q S T + + Sbjct: 342 RRVDPLRPLLPPK-----DIYLSIDELYTQLKPYSRTFISN--DILEERAGHYNFASCQP 394 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT-LTKRMAEDLTEYLEEHGERVRYLH 477 + P+ Q + L+ I ++ + E L E L R Sbjct: 395 PN-----LPIRAQAEQPLAAIEAFLMEYHGRVLFCAESAGRRETLLELLGRIRVRPAP-- 447 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 E + + + + I L +GL + V I ++ G ++ Sbjct: 448 --------AESWQAFLSSKESIAITIAPLEQGLQQQQPDTVLIAESQLFGERIQQQRR-- 497 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 + + K +Y IT + + + Sbjct: 498 -------RKQAQDNSELVVKNLTELKIGAPVVHIDHGVGRYRGLETITVDNQTNEFLTLE 550 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 A P+ + + +H+L Q A+ E+ Sbjct: 551 Y---------ADDAKLYVPVTSLHLISRYSGAEDDLAPLHKLGSESWQKAKRKAAEQIRD 601 Query: 658 IRDQLHQLRELFIA 671 +L ++ A Sbjct: 602 TAAELLEVYARRAA 615 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 58/468 (12%), Positives = 125/468 (26%), Gaps = 43/468 (9%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F D + P V + ++ A Sbjct: 630 AFSASFPFEETPDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQ 689 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 Q + + E + IE SRF + + + L + + Sbjct: 690 VAILAPTTLLAQQHYESLKDRFAE--WPITIEVLSRFRTTKEVNQVLERLAE----GKVD 743 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 ++ +H + + R + + + ++AT Sbjct: 744 IIVGTHKLLQPDIKFKNLGLLIIDEE--------HRFGVRQKEQIKALRAEIDILTLTAT 795 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTL 454 P L S + D + T + V T + ++ I + +V Sbjct: 796 PIPRTLNMSMAGIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHN 855 Query: 455 TKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 E + L+E H + + ++ D F+++V ++ G+D+ Sbjct: 856 EVDTIEKVARELQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDI 915 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P + + I ADK G + L Q GR R+ + +A+ + +R Sbjct: 916 PSANTIIINRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLTPE----RRAMTDDAVKR 967 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + E+ G G D+ G + + + + + + L Sbjct: 968 LEAISAAEDLG---AGFTLATYDMEIRGAGELLGEEQSG-------QIQTIGFSLYMEML 1017 Query: 633 QQKIHELEGLMMQHAQNLEFEE--------AAQIRDQLHQLRELFIAA 672 + + + + E A D L + + Sbjct: 1018 DRAVKAIRQGKQADIEQALKESIDINLRIPALIPSDYLPDVHLRLVMY 1065 >UniRef50_A8EV19 ATP-dependent RNA helicase DbpA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EV19_ARCB4 Length = 454 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 18/422 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L E ++ L + T ++ + + Sbjct: 6 LNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVA----FCLPIVN 61 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + + + T+ + + ++ + G P L + Sbjct: 62 KLKAKEFKIQALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQVVSLQHNA 121 Query: 334 LLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + L E L + ++ E QT+ Sbjct: 122 HIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTMLF 181 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQVDDLLSEIRQRAAINER 448 SAT + + + + + I+ ++ L+ + + Sbjct: 182 SATYEKNIETFASNILKNPIYKEISDEKEILINQKFYEVTPSEKTALIPALISH-NQAKT 240 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 L+ K E L + L + G + LHSD++ +R E + + +L+ ++ Sbjct: 241 TLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDVASR 300 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GL + +V LV D E+ IGR AR G AI + + I E Sbjct: 301 GLHIDDVDLVINYD-----LSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKE 355 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 K + + +N + G K + KG I E D+ Sbjct: 356 KFN-NIKIENPKDIKDDISFEINSNFRTVFINGGKKQKLR-KGDILGALISEAGLKSDDI 413 Query: 628 SP 629 Sbjct: 414 GK 415 >UniRef50_A3I1F5 DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9SPHI Length = 399 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 110/332 (33%), Gaps = 20/332 (6%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 + + + L + L+N +T + Sbjct: 79 TNIQEQSIEALLEGRDLLGISNTGSGKTGAF---LIPIIEHALKNPGQFTALIVTPTREL 135 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGMY 351 L++ E S + G T L ++V + + Sbjct: 136 ALQIDQEFKSLSKGMR--LHSATFIGGTNINTDMKVLSRKLHVIVGTPGRLLDLTNRKLL 193 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + ++ + L E+ L N K QT+ SAT + + + Sbjct: 194 KLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTMLFSATLEPNQKNLIQSLLKNP 253 Query: 412 VVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V ++ I P +L+++ Q A++ +V+V T TKR+A+ L++ Sbjct: 254 VEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADLFQNRAMD-KVIVFTETKRLADRLSK 312 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + G + +H + R + I + GE VLV ++ G+D+ +VS V Sbjct: 313 KLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVATDVAARGIDVADVSHVINYQLP 372 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 + S I IGR R G AI + + Sbjct: 373 M-----TMDSYIHRIGRTGRAGKTGHAITFVN 399 >UniRef50_Q4Z5Q6 ATP-dependent RNA helicase, putative n=2 Tax=Plasmodium (Vinckeia) RepID=Q4Z5Q6_PLABE Length = 1312 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 62/475 (13%), Positives = 138/475 (29%), Gaps = 28/475 (5%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTI---PRFTIYPK---THYVTPRERIVQAM 260 + ++ F + + + L + + I + E Sbjct: 561 GKNCPRPIQYFYQCGLPGKILNILEKKNFKKMFSIQMQAIPALMCGRDIIAIAETGSGKT 620 Query: 261 EEIKEELA--ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 L + L NN LT + +++ NE + + Sbjct: 621 ISYLFPLIRHVLHQDKLRNNDGPIGIILTPTRELSIQVKNEASIYCKAVD--LKILAVYG 678 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDN 374 G + L ++V I + + +RA L E L ++ Sbjct: 679 GSNIGAQLNVLKKGVEIIVGTPGRIIDILTISNSKVTNLNRASFIVLDEADRLLDLGFES 738 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRP 427 + QT +SAT NY + + + G + +EV Sbjct: 739 QIHSILNNCRKDKQTAMISATFPNYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLE 798 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ LL + + +L+ + A+ L L ++ + LH D +R Sbjct: 799 EKKKLFRLLKLLGEWIKYG-LILIFVNKQLEADLLYLELFKYEYKTLVLHGGQDQSDREH 857 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ + + +L+ +++ G+D+ + LV + I IGR R+ N Sbjct: 858 TLKSFKDEQNKILIATSVMARGIDIKNIILVINYECP-----DHIEDYIHKIGRTGRSNN 912 Query: 548 -GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 G A + + A I + + I + + + ++ ++ K Sbjct: 913 IGYAYTFITPNEHTKAYDIYNLIKNNIYYINKTIDIPIELEHMANEYMNSKITEKDGNKL 972 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 G + EL + + ++ E + + + Sbjct: 973 NTSNGGYKGKGFKFTPNEKSRMQMDKDLAKKELGLIEEKEDEDREAGYRSDMEND 1027 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 109/655 (16%), Positives = 213/655 (32%), Gaps = 78/655 (11%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D TL G+ GS A + + P+ L + ++ F Sbjct: 11 DKKKAITLSGLRGSSTALLAAQLAK--NSSCCCIVPDDHLIPIVVQNLQLF--------- 59 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL 148 + PS + S ++ + RL++ ++V S+ A+ Sbjct: 60 -----SEKTILSYPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114 Query: 149 GDPDLYLKMMLHL-TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA-- 205 P L + L G D+ ++ L L Y + G F VRG +IDI+P Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174 Query: 206 -----ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + + LR++ F + VE L FDP++ + + + P ++ +++ Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFII-DTSAKKSL 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +EI L R N + TQ LE +N +GIE++ G+ Sbjct: 234 QEIGTALQTRADKYSWN---------EELTQTMLEKINTGQGIAGIESFLPLFFP---GK 281 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF--RLPSALDNRPLK 378 +LFD+L D +V+ +S + Y+ + G P + P + Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRIEQNYLEVQGAGTPALPPKEIFLSPEE 341 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDL 435 +E + Q + I R + L Sbjct: 342 IKEKLSSFRQV---------RLSDIVSEQDNATSYNTQSHGLLKQEIARRRAKEGILVPL 392 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + IRQ R+++ +++ ++L E LE H + + S + + + R Sbjct: 393 IERIRQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK-----RAE 447 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 + ++L+ + L EG +PE I +++ G + +G A + Sbjct: 448 QREILLCDHPLSEGFSLPEQGWDIISESELFGQM--------RLGSKKSKSKKWA----E 495 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 I + R Y + I Q + + I + Sbjct: 496 PIEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDDKL---------YV 546 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P+ + V + +I +L ++ EE ++ +L ++ Sbjct: 547 PVDRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYAKRE 601 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 113/408 (27%), Gaps = 35/408 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ + Q + E + Sbjct: 646 PMDRLVCGDVGYGKTEVAIRGAFKVVEDGAQAAILVPTTVLAEQHLKTFRERLQNF--PL 703 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE +RF + + + L A + +V +H + + + Sbjct: 704 RIECLNRFRTA----KEQREIVKDLAAGKIDIVIGTHRLLSKDVQFKDLGLLIIDEE--- 756 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + ++ATP L+ S + D V + Sbjct: 757 -----HRFGVAHKERLRKMRAEVDILTLTATPIPRTLQMSLLSIRDLSVISSPPEQRRPV 811 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 VA D ++ I + + + + +E+ H +D Sbjct: 812 KTFVAEDDDLVIKEAISRELRRKGQTFFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMD 871 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T E I+ E DVLV ++ GLD+P + + I AD G Q GR Sbjct: 872 TKELENIMVSFVNKEVDVLVATTIIESGLDIPSANTMIINRADNLGLAEM----YQLRGR 927 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + ++ + ++ + E G + D+ G Sbjct: 928 VGRSSTQ---SFAYL----LVPSLDSISKDSRERLRALMECNELGGGFKLAMNDLQIRGG 980 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 ++ + D+ LQ+ + +L+ + + Sbjct: 981 GNLLGISQSGN-------IAAIGYDLYLDLLQKTVADLKAQKLSQEEQ 1021 >UniRef50_A5C4J0 Putative uncharacterized protein n=2 Tax=rosids RepID=A5C4J0_VITVI Length = 786 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 64/476 (13%), Positives = 123/476 (25%), Gaps = 75/476 (15%) Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL-RVELFDEEVERLSLFDPLTGQIVSTI 238 ++++ E+ A+ D++AL ++ L VE L + Sbjct: 86 GFSKDPLDVTDTDDDYDPEIEASAAAQEDELALAQLGLPPRLVESLEQRGITHLFPIQRA 145 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARR-------KVLLENNKLLEEQRLTQRTQ 291 + + + R + +L L + Sbjct: 146 VLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDDEKRTSQRRSGRLPRVLVLAPTRE 205 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GM 350 ++ E+ + G T + L +VV I I Sbjct: 206 LAKQVEKEIKESAPY----LSTVCVYGGVSYITQQNALSRGVDVVVGTPGRIIDLIKGNS 261 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + L E L + E Q++ SAT + + + + + Sbjct: 262 LKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDN 321 Query: 411 QVVRPTGL--------------LDPIIEVRPVATQVDD---LLSEI-------------- 439 + G ++ + L I Sbjct: 322 PLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLAEGIKLYAIPTTATSKRTILSDL 381 Query: 440 ---------------RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + A + +V T TKR A++++ L LH DI + Sbjct: 382 ITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKRDADEVSMALTNS-IASEALHGDISQHQ 440 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL---------VAILDADKEGFLRSERSL 535 R + R G+F VLV ++ GLD+P V L + + + Sbjct: 441 RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDLLFLQIIHYELPN-----DPETF 495 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + GR R G AIL K++ + + + Sbjct: 496 VHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAE 551 >UniRef50_A6FEC9 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Moritella sp. PE36 RepID=A6FEC9_9GAMM Length = 460 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 59/464 (12%), Positives = 124/464 (26%), Gaps = 34/464 (7%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE-RIVQAMEEIKEELAARRKVLL 275 + + V I + + + + L K Sbjct: 9 DPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQRMLKQRR 68 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 ++ + L + +++ + + +Y L E L + + Sbjct: 69 FEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQL--IIGRESFQHQEKLLRKNPEV 126 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIYVS 393 ++ + I + L E L + QT+ S Sbjct: 127 LIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFS 186 Query: 394 ATPGN-YELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-----TQVDDLLSEIRQRAA 444 AT + + + IE R + + L+ ++ Sbjct: 187 ATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSE-- 244 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++L+ T TK E L + L ++ +H D+ +R + D R G VLV + Sbjct: 245 DYRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATD 304 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+ +S V D + I GR R G AI + Sbjct: 305 VAARGLDIRTLSHVINFDLPI-----NPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFG 359 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + + +G K + +G+ + + Sbjct: 360 KIQSYLKVKLP--------CTMLEGFEAKFKGFKPK-PAKKRLPVSNKGRPAKLARKGDK 410 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLE---FEEAAQIRDQLHQ 664 + K + +G+ A ++ + R ++ Sbjct: 411 NAPKQKQNTAPKQDKKQGMRDSMASAVDGGFAPMKRKPRAEIID 454 >UniRef50_Q11TW3 Possible ATP-dependent RNA helicase n=10 Tax=Bacteria RepID=Q11TW3_CYTH3 Length = 388 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 53/375 (14%), Positives = 105/375 (28%), Gaps = 37/375 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + + F + T + + Sbjct: 29 YNAPYPIQEQAIP-AILKGKDILGIAQTGSGKTASFVLPILQMLQTKPLGKNRHINA--- 84 Query: 266 ELAARRKVLLENNKLLEEQRLT-QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L Q + + G + P Sbjct: 85 -LVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMIQLQ-GVEILIATPGR 142 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + + D + + + M + Sbjct: 143 LLDLVDSKAVYLSDVEVLVLDEADKMLNLG-----------------FKEEMANIFKLLP 185 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSE 438 Q + SAT G + + D V + I+ + LL Sbjct: 186 QKRQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDARKGPLLRY 245 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +N +VL+ T + A+ + E L+ + LHS R E ++ + G Sbjct: 246 LIKEQKMN-QVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIH 304 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKI 557 VLV +L+ G+D+P + V + RS + I IGR R +G AI + Sbjct: 305 VLVATDLMSRGIDIPFLPFVINYELP-----RSPKDYIHRIGRTGRAEASGVAINLISEE 359 Query: 558 TPSMAKAIGETERRR 572 I + ++ Sbjct: 360 ETHHFSVIQKKMGKK 374 >UniRef50_C3Y2B2 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y2B2_BRAFL Length = 672 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 63/451 (13%), Positives = 134/451 (29%), Gaps = 39/451 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY---VTPRERIVQAMEE 262 A+++++ + F + + V+ Sbjct: 240 YDTPTAVQMQVLPAGMMG-RDVMAAAPTGSGKTAAFLLPVVLNVFRTVSSAIGGRDPRWT 298 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L L + ++L + + G + + + P Sbjct: 299 HPLALILAPTRELCMQVEDQAKQLMKGLPHMRTALLVGGLPLPPQVHRLQQGVQVLVATP 358 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 L D L + + + + ++ M + L+ + Sbjct: 359 GRLLDILHRKDVSLECVEVLVVDELDTMLHLG-----------------FREQVLEIIDS 401 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDL 435 QT+ SAT + + + V G + I ++ L Sbjct: 402 LPSQRQTMMFSATIPQPIETLASSILNNPVYVLVGQASTPSPSVKQTILWVEENSKKRML 461 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRL 494 + ++ VLV ++ A+ L + + ++ R +H D ER + L Sbjct: 462 FTILQDPKHYQPPVLVFVDSRMGADLLADAIHKKCNVRALSMHGDKPQSERSAALNSLLK 521 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 GE DV+V +L GLD+ V LV + D S I IGRA R +G+A+ + Sbjct: 522 GEVDVVVATGVLGRGLDLCRVRLVIVFDMP-----PSVNEYIHQIGRAGRLGSSGRAMAF 576 Query: 554 GDKITPSMAKAIGETERRREKQQK---YNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + +T Q N H + K+ + ++T+ G Sbjct: 577 INNNNKGLFLDLFDTLHPLHMQMPSQLVNSPHLQQQRERRKRTQRARENVETSSRTEQHG 636 Query: 611 RG-KSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + +Q+ + + Sbjct: 637 EKWAQQKHSNAAYMQRQRAKRGREQEGSKAK 667 >UniRef50_Q09903 ATP-dependent RNA helicase drs1 n=2 Tax=Schizosaccharomyces RepID=DRS1_SCHPO Length = 754 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 50/465 (10%), Positives = 131/465 (28%), Gaps = 32/465 (6%) Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 F+ T TIP + V + R + L Sbjct: 279 FEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLIL 336 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + ++ + + + L G L +V+ I Sbjct: 337 CPTRELAMQCHSVATKIASFTDIMVCLC--IGGLSLKLQEQELRKRPDIVIATPGRFIDH 394 Query: 347 IGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + E L + + + + QT+ SAT + + Sbjct: 395 MRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLI 454 Query: 405 GGDVVDQVVRPTGLLDPI--------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + V + VRP + + + + R ++ +K Sbjct: 455 RLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSK 514 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 A + +H + +R+ + D R G+ + L+ ++ G+D+ + Sbjct: 515 AFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIE 574 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 +V +A + + +GR AR G+AI + + K + + + + Sbjct: 575 VVINYEAP-----ATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTK 629 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL--- 632 + K++ ++ + Q + + + R + M Sbjct: 630 LVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGDEIRS 689 Query: 633 ---------QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 ++ + + ++L + ++++ + + Sbjct: 690 RPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKK 734 >UniRef50_A5K071 ATP-dependent RNA helicase, putative n=3 Tax=Plasmodium RepID=A5K071_PLAVI Length = 717 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 50/336 (14%), Positives = 102/336 (30%), Gaps = 37/336 (11%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + E + ++ + G + + P L Sbjct: 405 LILLPTRELCMQVVDE-IKAFEKELHIRSVAVYGGVPKYTQISNLKKGADIVVATPGRLL 463 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D L + + ++ +V I + + + + K Sbjct: 464 DLLESGVIHLLRCIYVVIDEADRLLD-----------------MGFEKQLKKIMTQVNRN 506 Query: 387 PQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLD-------PIIEVRPVATQVDDLLSE 438 Q ++ +AT + + D V G + V + + L + Sbjct: 507 KQLLFFTATWPEQVRKLAYQFSSFDPVKIQIGKSELTANKNIQQSVVISSSIDLKKKLLD 566 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ ++L+ TKR + L + L H +H D + ER I+ + R + Sbjct: 567 WLKQNYEGNKILIFCDTKRNCDSLCKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCN 626 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG--- 554 +LV ++ GLD+ +S+V D + I IGR R G+A+L+ Sbjct: 627 ILVATDVASRGLDIKNISVVVNYDLPN-----TIEDYIHRIGRTGRAGQKGRAVLFFPYD 681 Query: 555 --DKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 A+ + + + +G Sbjct: 682 YYVPQKGRFARDLVKLLSKANHAVPAELREIAGTRG 717 >UniRef50_A1S988 Superfamily II DNA and RNA helicase-like protein n=108 Tax=Proteobacteria RepID=A1S988_SHEAM Length = 613 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 115/400 (28%), Gaps = 38/400 (9%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F++ E+++ A + ++ F + H + Sbjct: 5 DFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQHLI 64 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L + L + D++ + G G + Sbjct: 65 ----DFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIK-LITGGVPYGPQEEM 119 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + P L +YL + I + M Sbjct: 120 LKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLD-----------------M 162 Query: 371 ALDNRPLKFEEFEALAPQTIYVSAT-PGNYELEKSGGDVVDQVVRPTGL-------LDPI 422 + Q + SAT G + + + + + + Sbjct: 163 GFGEVVKTIAVEASGRKQAMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQW 222 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 I + LL+ + + +R +V T+ + L L++ G ++ D+D Sbjct: 223 IHLADDKDHKFALLTHLLK-QEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQ 281 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R + + GE +VL+ ++ G+D+ +++ V D RS + + IGR Sbjct: 282 KKRFQALGRFTKGEVNVLLATDVAARGIDIEDITHVINFDMP-----RSADTYVHRIGRT 336 Query: 543 ARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 R G AI + + + + K++ E Sbjct: 337 GRAGAKGTAISLVEAHDMRILGKVERYIEQPLKRRVIEEL 376 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 67/435 (15%), Positives = 120/435 (27%), Gaps = 36/435 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + E F+E D L P + + I+ Sbjct: 536 DTPWQKE-FEEAFPYEETPDQLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFK 594 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q Q G + SRF S + Sbjct: 595 AVMSGKQVAVLVPTTVLAQQHYQTFSSRFAGFGPVV--DVISRFRSPKEQKAT----LAK 648 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + A + V+ +H + + + + Sbjct: 649 VRAGQVDVLIGTHRLLNPDVQFKDLGLLIVDEE--------QRFGVAQKEKLKKWRTNID 700 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINE 447 + +SATP L S D + T + V + + IR+ Sbjct: 701 VLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRRELRRGG 760 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + + L E H + ++ D G +D+LV ++ Sbjct: 761 QVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSEDRLERVMLDFYEGNYDILVCTSI 820 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + + DADK G + L Q GR R + + K + Sbjct: 821 IESGLDVPNANTIIVYDADKFGLAQ----LYQMRGRVGRTHRMAYAYFTYQRD----KVL 872 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R + K E G G + D+ G + +V Sbjct: 873 TEVAEKRLQAIKEFAELG---AGFKIAMRDLEIRGAGNILGPQQHG-------HILSVGF 922 Query: 626 DMSPKALQQKIHELE 640 +M + L + + EL Sbjct: 923 EMYCRLLDEAVQELR 937 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 58/350 (16%), Positives = 114/350 (32%), Gaps = 23/350 (6%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + +A+++ + G+TG+ K+ +A R T ++ + Sbjct: 2 QPLFDAIQTDKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGE 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +QL ++ P P +P+ D + + + RL Sbjct: 62 SLSQLKSDLATLLP-------------AAPVLELPALDFVTFSVTAKSLELTAQRLDIYS 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L V+V+A+ AI P + + + L G I+ +L L Y R DQ Sbjct: 109 RLLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F RG +IDIFP + LR+ELF +E++ L FDP T + + + + I P Sbjct: 169 DNVGQFSARGGIIDIFPL-NRPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMPII 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM-----MNELGY 302 + + + + + + + + Sbjct: 228 E--PEHSGKRTTVLSYLPADGCVVFDEPARVREAMAKLIKENPEIKRRVYTWPDIAAAAQ 285 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 + S L + P P + + + + ++ Sbjct: 286 AFNVVYLSLLLQ-KTPYTEPGEIHSITAKGIAPFHRQMEMLVDELKAWLD 334 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 34/243 (13%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + P Q++ L+ E++ + ++ + A L L + G + Sbjct: 315 IAPFHRQMEMLVDELKAWLDRKLQPVIFMTNRDKAVHLQHNLTQEGVSAVF--------- 365 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 E + L G V++ + +L G ++P L + + D G Q G R Sbjct: 366 -SEQLTTLVPGT--VMITVGVLAGGFELPHAKLAVLTEKDIFGR--------QKKGIRPR 414 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+ I Y K KY + G+++ I G++ Sbjct: 415 AAKGQQITYF-----RDLKVGDYVVHVNHGIGKYAGVETLEVGGVHRDYFLIRYAGEDKI 469 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P + + + + ++H + G Q A + A + +L Sbjct: 470 ---------YVPTDQVHLLQKYIGAEGEVPRLHRMGGTEWQKATSRAKAAVADLAKELIA 520 Query: 665 LRE 667 L Sbjct: 521 LYA 523 >UniRef50_C6LXV4 DEAD box RNA helicase Vasa n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LXV4_GIALA Length = 658 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 59/476 (12%), Positives = 130/476 (27%), Gaps = 62/476 (13%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV------TPRERIVQA 259 ++ + + + + F T + T ++ Sbjct: 198 YKQPTPIQENAIPLILSSMDIL-ATSQTGSGKTFSFLSPIVTKLINSHAKDTILSEDRES 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L +LT +T + + G + + Sbjct: 257 STSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIV-RLVYGGEGAREQKGLLRKGCDIVI 315 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D+L + L E L + + Sbjct: 316 ATPGRLKDFLERGC-----------------LSLKYVQIMVLDEADKMLDMGFEPQIRDL 358 Query: 380 EEF-------EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------- 424 + QT+ SAT G + + ++ G + Sbjct: 359 VYKFDMPGNGSNGSRQTLMFSATFGGGVQNMAKRYLHNEARIHIGQIGTTTTTIKQQFEY 418 Query: 425 -----VRPVATQVDDLLSEIRQRAAINER---VLVTTLTKRMAEDLTEYLEEHGERVRYL 476 ++ V +++ L+ ++ +I L+ TK+ + L G RV + Sbjct: 419 IAETAMKSVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLLNAGLRVCEM 478 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H D++ ER +++ + G+ VLV ++ + G+D+ + V D + + I Sbjct: 479 HGDLEQRERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFDFP-----KDIDAYI 533 Query: 537 QTIGRAARNV-NGKAILYGDKITPSM-AKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 IGR R G A + TP + + + ++ G K Sbjct: 534 HRIGRTGRAGAEGLATSFILLDTPHHILRELKNILTQSKQPVPKF-----LQDGPPSKY- 587 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 G+ ++ R ++ + D + + + + G Sbjct: 588 -GQGSGKGRSREYESTRKSTQIESDDDLSDLSDYGARFKPRSNHHSGASEAVTPAK 642 >UniRef50_A9V8Y7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V8Y7_MONBE Length = 543 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 57/469 (12%), Positives = 122/469 (26%), Gaps = 39/469 (8%) Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G G + + + ++++ + + F + Sbjct: 84 GPAASSGLLQALTEFFKEPSPIQMQAIPALL-SNRDVVGVAPTGSGKTLAFAVPMMQLLQ 142 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 P+E L E L + ++ + SG S Sbjct: 143 APKEEG-------FRCCILAPTRELAAQIKRELDLLNTHLHLKISLLTKARAASGSLTSS 195 Query: 311 RFLS-----GRGPGEPPPTLFDYLPA---DGLLVVDESHVTIPQIGGMY-RGDRARKETL 361 + + P L ++V + + R + Sbjct: 196 KKHGWWPGCPKMIPVCPKVLLKLTWCMRARPDILVATPMRLVHALQHKLVDLSAVRWLVV 255 Query: 362 VEYGFRLPSALDNRPLK-FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 E + + + + + SAT + + D V G + Sbjct: 256 DEADRLFENGFEQQIDEVIAACSHKKRRIALFSATMPERVETLAQTVLHDYVRIVVGAAN 315 Query: 421 ---PIIEV-RPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVR 474 +E + ++ IRQ + VL+ +K A+ L E L V Sbjct: 316 AANQDVEQELKFVGSEEGKMTAIRQMLQTGLQPPVLIFVQSKSRAQQLFEELVYENVNVD 375 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +H+D +R E+++ R G+ VL+ +L+ G+D V++V D + Sbjct: 376 VIHADRTQQQRDEVVKRFREGQVWVLICTDLMGRGVDFKAVNVVINYDFP-----PNATE 430 Query: 535 LIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I +GR R G+A+ + M + I + + + Sbjct: 431 YIHRVGRTGRAGHRGRAVTFFTVDDRPMLRNIANVVKASGSEVPEWMLKLKKTE------ 484 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + I + + + + Sbjct: 485 ---KQRSRQIERAPVSSNPNVQAADKKTKAKRAQKASDAGAAPPKKGKH 530 >UniRef50_A5KB15 ATP-dependent RNA helicase, putative n=1 Tax=Plasmodium vivax RepID=A5KB15_PLAVI Length = 1341 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 64/457 (14%), Positives = 135/457 (29%), Gaps = 38/457 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKVLLENN 278 + F + G + TIP + + E L + L NN Sbjct: 683 ILERKQFKKMFGIQMQTIPA--LMCGRDVIAIAETGSGKTLSYLFPLIRHVLHQPPLRNN 740 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 LT + ++ +E + + + G T + L ++V Sbjct: 741 DGPIAIILTPTRELSKQVKSEARPYC--QAVNLRILAVYGGSNIGTQLNTLKRGVEILVG 798 Query: 339 ESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 I + + +R L E L +++ QT +SA Sbjct: 799 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKDKQTAMISA 858 Query: 395 TPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T NY + + + G + +EV ++ LL + + ++ Sbjct: 859 TFPNYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLEGGKKIYRLLKLLGEWSSYG- 917 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +L+ + A+ L L ++ + LH D +R ++ + G+ +L+ +++ Sbjct: 918 LILIFVNRQLEADLLYLELFKYDYKTLVLHGGQDQADREFTLQTFKEGKNKILIATSVMA 977 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ ++ +V + I +GR R+ G A + + A I Sbjct: 978 RGIDIKDIIVVINYECP-----DHLEDYIHRVGRTGRSNKIGYAYTFVSPEEHAKAYDIY 1032 Query: 567 ETERRRE----KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + K E + + + K + ++ D Sbjct: 1033 SLIKNNIYYMNKTIDMPRELEELVREFTQSSNYAEVRKKGYKGKGFKFTPNEKSRLQMDK 1092 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 EL Q+ E +I+ Sbjct: 1093 ----------ANAKRELGLPNPQNEIKRIELEIQRIK 1119 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 59/432 (13%), Positives = 120/432 (27%), Gaps = 35/432 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+E D L + + P + + I+ A Sbjct: 524 FEEAFIYEETPDQLKAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQA 583 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q E + ++ L + L + V Sbjct: 584 VLLTPTTVLAKQHFNTLRERFADYP------IHTALLCRFVKNSEEKEILAGLKEGTVDV 637 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + +G + + +SATP Sbjct: 638 VVGTHRLLSADVEFKDLGLIVIDEEQRFGVLQKEKWKEKFRFI--------DVLLLSATP 689 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + D + T + V + ++ I + +V Sbjct: 690 IPRTLYLAMAGARDMSLIETPPPNRFPIETIVGPYDERVIRQAIERELNRGGQVYFLHNR 749 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 R E + L+ ++ H + E E++ G+ DVL+ +++ GLD+P Sbjct: 750 IRTIEKVASRLKSLLPSIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIP 809 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD G L Q GR R+ I ++R Sbjct: 810 NANTIIIDRADLFGLA----DLYQLRGRVGRSNQKAYAYLLLPRDL----FIQSDAKKRI 861 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + + + G G + D+ G ++ ++ ++ K L+ Sbjct: 862 KAMQEHSQLGT---GFQIALRDLEIRGAGNLLGTSQSG-------HIASIGFELYCKLLK 911 Query: 634 QKIHELEGLMMQ 645 + I +++G + Sbjct: 912 KAIQKIQGKETE 923 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 98/246 (39%), Gaps = 26/246 (10%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDG---LAHQTLLGVTGSGKTFTIANVIADLQR 58 ++ +++ D P L + L + + + SG++F +A+ + + Sbjct: 23 QASKEMTFSYEKWLDHP-----LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRG 77 Query: 59 PTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 P +V+A N ++ ++ + P +P + + + Sbjct: 78 PLLVIAENIKKTNEIALGLECW---------------GSPYLILPEVEPVPAESL-PDPT 121 Query: 119 IEQMRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLA 177 RLS ++L+ +++ + A+ P+L + L L V D++A++ +L Sbjct: 122 FLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKLV 181 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y R D RG F VRG +ID F +S LR+E + L FDP+T + Sbjct: 182 TAGYERVDSVDCRGQFAVRGAIIDTFCWDS-CYPLRMEWEGNRLISLRQFDPITQRSFKP 240 Query: 238 IPRFTI 243 + + + Sbjct: 241 LAQAHL 246 Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 71/253 (28%), Gaps = 51/253 (20%) Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + L + + V++ + L E L G Sbjct: 300 DWFYQERRWQLFLEALGRWIEKQWEVVIFVNNEGEESRLKEILNNQGISTE--------- 350 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +L + L G PE L + DA+ G ++++ L+ R+ Sbjct: 351 --------------KILFSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILL----RSQ 392 Query: 544 ------RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 R G I + + + + + + T +G N ++V++ Sbjct: 393 QKNDYFRAPLGSDI-FEQWKEGDIVVHLQKGICKFKGI--------KTIEGTNTEMVELE 443 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + PI + + + K+ L G A+ + Sbjct: 444 F---------DQQAKLYVPIDQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTD 494 Query: 658 IRDQLHQLRELFI 670 + ++L ++ Sbjct: 495 LAEKLLKINAERE 507 >UniRef50_A4S107 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S107_OSTLU Length = 478 Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 52/434 (11%), Positives = 105/434 (24%), Gaps = 67/434 (15%) Query: 160 HLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDE 219 G +D + R L + Y + + + Sbjct: 55 RFGQGGALDVDCL-RALRRMGYESPTAVQ------------------AQCLPV------- 88 Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 + + F + Y + E L L + Sbjct: 89 -IWSGHDALVMAKTGSGKTLAFLLPA---YAQISRQRPLTKREGPIALVLAPTRELASQI 144 Query: 280 LLEEQRLTQ-RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD-YLPADGLLVV 337 E + T+ G + P L D + + Sbjct: 145 ANEAHKFTKFGVSGARCCAIFGGVSKRDQFKKLRAGAEIVVATPGRLVDVLCMKNSTNLR 204 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +++ + + M + + Q + SAT Sbjct: 205 RVTYLALDEADRMLDMGFEKI-----------------VRSICQAVRPDRQCVMFSATMP 247 Query: 398 NYELEKSGGDV-VDQVVRPTGLLD-------PIIEVRPVATQVDD-LLSEIRQRAAINER 448 + + D V G + ++ V + L + + Sbjct: 248 AAMQRLARDVLARDAVTVSIGNVGGANEDVRQVVYVFEDDARRAAWLFENLGDAVDEG-Q 306 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V K E+L L G + LH D+D +R ++ + VLV ++ Sbjct: 307 AIVFVNHKSSVEELVNELATRGIKAVALHGDLDQAQRQFAMKAFKSEHAHVLVATDVAAR 366 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITP-SMAKAI 565 GLD+ + V R + + IGR R +G+A A+ + Sbjct: 367 GLDVEAIKTVVNFH-----PARDMSTHVHRIGRTGRAGALDGRAYTLFTARDSAKFAQQL 421 Query: 566 GETERRREKQQKYN 579 + + + Sbjct: 422 EQNLEAAGQPVPLD 435 >UniRef50_Q54TJ4 Probable ATP-dependent RNA helicase ddx27 n=1 Tax=Dictyostelium discoideum RepID=DDX27_DICDI Length = 783 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 54/460 (11%), Positives = 130/460 (28%), Gaps = 40/460 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ + + + + F + + Sbjct: 210 FSQPTPIQAKAIPLALNGKDILASAS-TGSGKTAAFLLPVLERLLFRDSEYRAIRV---- 264 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + L Q + G + + S P L Sbjct: 265 -LILLPTRELALQCQSVMENLAQ-FSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRL 322 Query: 326 FDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D+L A G+ + D + + + + + K E Sbjct: 323 IDHLLNAHGIGLDDLEILILDEADRLLD-----------------MGFKDEINKIVESCP 365 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA---------TQVDDL 435 QT+ SAT + + + + L + + + Sbjct: 366 TNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAI 425 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L + R ++ +K+ L + LH ++ +R + ++ R G Sbjct: 426 LLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDG 485 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 + + L+ ++ GLD+ V V + + + I +GR AR +GK+ + Sbjct: 486 QVNYLLASDVASRGLDIIGVKTVINYNMPN-----NMANYIHRVGRTARAGMDGKSCSFI 540 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + K I R + K + ++++ + +++ + + +A R Sbjct: 541 TDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAE 600 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + + + + + K+ ++ L E Sbjct: 601 KTLDKAEKIISNADANVETPKVWYKTKQEEDKSKELWKIE 640 >UniRef50_Q4V836 MGC114699 protein n=13 Tax=Chordata RepID=Q4V836_XENLA Length = 758 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 60/483 (12%), Positives = 138/483 (28%), Gaps = 48/483 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + F + + + Sbjct: 201 FTQPTPIQKACIPVGLLG-KDICACAATGTGKTAAFMLPVLERLIYKPR-----EAPVTR 254 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L Q T+ + G + Sbjct: 255 VLVLVPTRELGIQVHAVTRQLAQFTE-VTTCLAVGGLDVKTQE----------------- 296 Query: 326 FDYLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + +++ I + + + L E L + + + Sbjct: 297 -AALRSGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLC 355 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDL 435 + QT+ SAT + + + + V + +RP + Sbjct: 356 SHQRQTLLFSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREA 415 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 ++ + V++ T TK+ A + L G +V LH ++ +R+E +R + Sbjct: 416 VACALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDE 475 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 + D+LV ++ GLD+ V V L + + + +GR AR G+++ Sbjct: 476 QIDILVATDVAARGLDIDGVKTVINLTMP-----GTVKHYVHRVGRTARAGKAGRSVSLV 530 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + M K I + + K + ++ K+ + + + + R Sbjct: 531 GEEERKMLKEIVKKAQAPVKARVIPQD---VISKFRDKITKSEKEIYAVMQLEKEEREMQ 587 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL----HQLRELFI 670 + + + + E + + E A L + R+ F+ Sbjct: 588 MSEAQISVAKKKLQQEKGGEAQPERSWFQTRDERRKEKLSHALQEFDLAMRGKKKRKKFL 647 Query: 671 AAS 673 + S Sbjct: 648 SDS 650 >UniRef50_A8BS29 DEAD box RNA helicase Vasa n=1 Tax=Giardia lamblia ATCC 50803 RepID=A8BS29_GIALA Length = 449 Score = 231 bits (589), Expect = 6e-59, Method: Composition-based stats. Identities = 54/380 (14%), Positives = 113/380 (29%), Gaps = 42/380 (11%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVT--------PRERIVQAMEEIKEELAARRKVLLEN 277 + F ++ ++ ++ + L Sbjct: 2 DLLATSQTGSGKTFSFLSPIIAQLISSRAKDAISDDDKNMEQSMSFPLAVILSPTRELTQ 61 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 +LT +T + + G + + P L D+L L + Sbjct: 62 QIAFMCYQLTFKTNLIV-RLVYGGEGAREQRGLLKKGCDIVIATPGRLKDFLERRCLSLK 120 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + M + + Y F +P QT+ SAT G Sbjct: 121 YVRVMVLDEADKMLDMGFEPQIRDLVYKFDMPG----------NGPNGNRQTLMFSATFG 170 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVR-------------PVATQVDDLLSEIRQRAA 444 + + ++ G + + V ++D L+ ++ + Sbjct: 171 TGVQAMAKRYLHNEARIHVGQIGSTTTMIKQQFEYFAETAIKSVDKRIDKLIHILKSPGS 230 Query: 445 INER---VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 I L+ TK+ + L G RV +H D++ ER ++ + G+ VLV Sbjct: 231 IPTASFLTLIFVETKKDIGYIITKLLNAGLRVCEMHGDLEQRERQNNLKSFKDGKTPVLV 290 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ + G+D+ + V D + + I IGR R G A + TP Sbjct: 291 ATDVAQRGIDIGAIRHVINFDFP-----KDIDTYIHRIGRTGRAGAEGLATSFILLDTPH 345 Query: 561 M-AKAIGETERRREKQQKYN 579 + + + ++ Sbjct: 346 YILRDLKNILLQSKQPLPKF 365 >UniRef50_Q1IMK6 DEAD/DEAH box helicase-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMK6_ACIBL Length = 423 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 54/396 (13%), Positives = 106/396 (26%), Gaps = 29/396 (7%) Query: 213 RVELFDEEVERL---SLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEE 266 R+ F++ + + + I P + + Sbjct: 25 RLTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIP 84 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT-L 325 + ++ L + +++ G + S L G Sbjct: 85 ALEMLRDT--EPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAAL---VMGGTSERNQ 139 Query: 326 FDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + + +VV + + L E + + Sbjct: 140 IQSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALP 199 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLLS 437 QT+ SAT G + + V G + + P+ + D L Sbjct: 200 RDKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQ 259 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + LV TKR E L + L G +H D +R + G Sbjct: 260 LLY---EQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSI 316 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 VLV ++ GLD+ +++ V D + I +GR R G A Sbjct: 317 KVLVATDVAARGLDVDDIAHVINFDLP-----QVPEDFIHRVGRTGRAGATGMATSLVSG 371 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 + I T + + ++ N + ++ Sbjct: 372 AEVFELRNIERTLKLKIARRDLNATTTPKREVKHRD 407 >UniRef50_C7DHL0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHL0_9EURY Length = 434 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 102/380 (26%), Gaps = 42/380 (11%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ E +V F + + E Sbjct: 23 TAPTDVQRESIP-KVLSGRDIIVRAKTGTGKTYAFLLPIMEKI---------SRGRDIEA 72 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L +L ++ G ++ P + Sbjct: 73 LILAPTRELAVQIFESGYKLRD--NEIRAVVAYGGVSINMQMQKISRGCNILIGTPGRIL 130 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + L + ++ + + M + Sbjct: 131 DLISRGVLDLEKVKYLVLDEADIMLD-----------------MGFIDDVKDIVRHTGRG 173 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQR 442 QT++ SAT + + + G + I ++ S + Sbjct: 174 RQTMFFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEVGRNEKFSALLAY 233 Query: 443 AAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++ ++ TK AE L L G +H + R + + + + +L Sbjct: 234 IDEYKPKKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTLNNFKT-DATML 292 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V N+ G+D+ ++S V D + R + +GR+AR +G+A Sbjct: 293 VTTNVTARGIDIRDISDVINYDCP-----DNPRVYLHRVGRSARMGADGRAFSIITHQQR 347 Query: 560 SMAKAIGETERRREKQQKYN 579 ++ I + K+ + N Sbjct: 348 NLISDIEYMAKIDVKELRLN 367 >UniRef50_Q21EB3 DEAD/DEAH box helicase-like protein n=2 Tax=Gammaproteobacteria RepID=Q21EB3_SACD2 Length = 436 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 56/434 (12%), Positives = 118/434 (27%), Gaps = 38/434 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 + ++V+ V F + ++ Sbjct: 20 TFTKPTDVQVQTIP-AVLAGKDIMVSAKTGSGKTAAFLLPMLHKFLNDPRPNTST----- 73 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + ++ T + G + + + P Sbjct: 74 RALILLPTRELALQTVKAFEQFAGYT-QIKVGLIMGGEAYKHQVATVRKNPEVLVATPGR 132 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +++ + D + + + M L Sbjct: 133 LVEHIKNGNVDFSDLEFLVLDESDRMLD-----------------MGFQENMLAIAAVCN 175 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLS 437 Q + SAT + + G + D V + + + L+ Sbjct: 176 EERQNLLFSATLKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVV 235 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ +RV+V T+ + ++ L + Y+H ++ +R +++ G+ Sbjct: 236 KLIAE-EDAQRVIVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKI 294 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+ +V LV A G + +GR R+ G AI Sbjct: 295 RVLVATDVAARGLDIKDVDLVINFSAAFTG-----DEHVHRVGRTGRSDKTGLAITLISP 349 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + +I + R +K G K A + G+ + Sbjct: 350 KEFNPMSSIERYLKIRLIPRKVKGLEGTYNGPKKLKSSGKAAGPKKKKTKTTAGKPGKKL 409 Query: 617 IVEPDNVPMDMSPK 630 + D +PK Sbjct: 410 PSKKDPQKKRSAPK 423 >UniRef50_Q30YG9 DEAD/DEAH box helicase-like n=9 Tax=Deltaproteobacteria RepID=Q30YG9_DESDG Length = 530 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 105/379 (27%), Gaps = 16/379 (4%) Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D + R L +E +S + + + Sbjct: 47 LDHVKTGAAVSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGK 106 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 L R + E+ + + T+ + ++E R + G Sbjct: 107 TAAFVLPLLHRLLLQGESARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGV 166 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPLK 378 L +V+ + + + L E + + Sbjct: 167 G-MHAQTVQLRTGVDIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVRE 225 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--LDPIIEV----RPVATQV 432 + QT+ SAT E + + V + P + P + Sbjct: 226 ILHCTRVRKQTMLFSATMPAPLRELAEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKT 285 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L +R A VLV T+ A L + L + G L ++ R + Sbjct: 286 PLLKYVLRAFARD--SVLVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGF 343 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAI 551 R G F V+V ++ G+D+ +V V D S + + GR R +G A+ Sbjct: 344 RRGTFRVMVATDIAARGIDVSQVGYVINYDFP-----PSVEACVHRAGRTGRASNSGVAL 398 Query: 552 LYGDKITPSMAKAIGETER 570 + + + + Sbjct: 399 TFVTQEDEPQVRTLERVLG 417 >UniRef50_A8R9Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R9Z2_9FIRM Length = 472 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 126/435 (28%), Gaps = 36/435 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-QAMEEIKEELAARRKVLL 275 F E + D L + I + + A L Sbjct: 6 FGLEQGIMEALDILGYHKPFAVQEAVIP--HLLAKQDVIVQAKTGSGKTASFAIPILQQL 63 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT-LFDYLPADGL 334 N+ L + + T+ + G + + L+ G+ P L Sbjct: 64 IWNEKLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLA--IYGKFPFRFQKQDLQQRTH 121 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++ + + + R + E L + ++ T S Sbjct: 122 VICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALFS 181 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 AT ++ + + D + ++ + + LL + + Sbjct: 182 ATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKE--TV 239 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E ++ T+ E++ + L+ H RV LH + ER+ ++ R GE +LV ++ Sbjct: 240 ESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVA 299 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+ ++S V +D + + I +GR AR +GKAI + + Sbjct: 300 ARGIDIADISHVINVDFP-----DKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQL 354 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + ++L +++ K + Sbjct: 355 EDYLGYSLSM--------------RDASTELLTQDYDLSYLSQSSERKEDKGAALRKDVL 400 Query: 626 DMSPKALQQKIHELE 640 + A + K Sbjct: 401 RIYIGAGKAKKLRAG 415 >UniRef50_Q9NVP1 ATP-dependent RNA helicase DDX18 n=124 Tax=cellular organisms RepID=DDX18_HUMAN Length = 670 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 42/430 (9%), Positives = 111/430 (25%), Gaps = 28/430 (6%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++ + + + + + L Sbjct: 189 NTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP 248 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG-PGEPPPTLFDYLPADGLLVV 337 + + T+ G + + G G L ++V Sbjct: 249 RNGTGVLILSPTRELAMQ--TFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIV 306 Query: 338 DESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + + E L + + + QT+ SAT Sbjct: 307 ATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT 366 Query: 396 PGNYELEKSGGDVV-DQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + + + + + L+ V P + L + +++ Sbjct: 367 QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKK--NR 424 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++++V + + E L V +H +R + L+ ++ Sbjct: 425 KKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDV 484 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAK 563 GLD+PEV + D + I +GR AR G A+L + Sbjct: 485 AARGLDIPEVDWIVQYDPP-----DDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLR 539 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ + + + ++ ++ + K+ + + ++ Sbjct: 540 YL----KQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSL 595 Query: 624 PMDMSPKALQ 633 + L Sbjct: 596 KQIFNVNNLN 605 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 96/614 (15%), Positives = 193/614 (31%), Gaps = 66/614 (10%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 R ++++A A +++ ++ + EN P +DT + S Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGEN--------------VMLFPPTDTLPYEHMS 99 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 100 ADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL 159 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 160 AHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQR 218 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + I P R K + + + + Sbjct: 219 SDKRVRQIQISPAHEIPFWRRT-------------EAIKRIEQLQIASLRREVQHEWATA 265 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F L+ +LPA ++++ E H Q + Sbjct: 266 REHLETGQRFEGRAFYAPFFRTPHEAAEAG-LWQHLPASAIILLSEEHELNAQGIELQSH 324 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + T +E P ++ + + + + Sbjct: 325 ADLVRSTQIENNELPPDFPFPLIAWTFIRRSIQRWSCLNLSNQP-----IAD--DQNDSF 377 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ + Q D L ++R+R ERV++ + +L Sbjct: 378 VHE--INTFSQAASYGGQTDRLFEDLRERLVGGERVVLISPQASRLRELASQ------HN 429 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L + D + + + G +++ L G + L + D++ G+ + Sbjct: 430 LALIGEEDGPDVDD--PPFQSGT--IIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQRRA 485 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + T R R + + I +Y I G ++ Sbjct: 486 --LSTRARKQRTESDRTAFLQSLKVGDYVVHIEH------GIAQYEGLSRIEASGAEREF 537 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + A G P+ + D V + + + L + A+ Sbjct: 538 LVLRY---------ASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKRKVRA 588 Query: 654 EAAQIRDQLHQLRE 667 + ++ +L L Sbjct: 589 DVEELATELLDLYA 602 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 71/526 (13%), Positives = 150/526 (28%), Gaps = 57/526 (10%) Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + + D + L +L YA A S D + Sbjct: 577 SDWERAKRKVRA----DVEELATELLDL-YAARQLVEGF--------------AYSSDTS 617 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 + EL ++ D L P + + ++ A + Sbjct: 618 WQREL-EDSFPYTETDDQLRAIEEVKSDMENTRPMDRLICGDVGFGKTEVALRAAFKAVQ 676 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + Q + M + + R ++ + + Sbjct: 677 DGRQVAVLVPTTVLAQQHFETFSRRMQMFPVRIEMLSRFRS------ASQQKSITERIVK 730 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + +V +H + + + + + + + Sbjct: 731 GEIDIVVGTHRILSSDIHFKQLGLVIIDEE--------QRFGVKDKERLKKLRHEIDVLT 782 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVL 450 ++ATP + + + D V T D + V + L+ I + N + Sbjct: 783 LTATPIPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLVRDAILRELGRNGQAY 842 Query: 451 VTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + + L++ H + ++I G FDV V ++ Sbjct: 843 FVHNRVQSIYTVANRLQKLVPEARIGVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIES 902 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGE 567 G+D+P + + I DA G + L Q GR R+ G A ++ + KA+GE Sbjct: 903 GIDVPSANTMIIDDATTYGLAQ----LYQLRGRVGRSTQRGYAYMFYNPT-----KAMGE 953 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 ++R + + E G G + D+ G + + D+ Sbjct: 954 EAQKRLEAIQEATELG---AGFRIAMRDLEIRGTGNLLGAEQSGN-------ITTIGFDL 1003 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L Q + + + Q E+ AQ + LR + ++ Sbjct: 1004 YSRLLSQAVERVREERKRGQQQKSGEQKAQRARAVEALRRAAVVSA 1049 >UniRef50_B6KVV0 ATP-dependent RNA helicase, putative n=5 Tax=Alveolata RepID=B6KVV0_TOXGO Length = 479 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 57/431 (13%), Positives = 114/431 (26%), Gaps = 46/431 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 A++ E+ ++ L F + + + L Sbjct: 73 SPTAIQSEVLPYALQG-RDIIALAETGSGKTAAFGLPILQRLLQ--------RTQRFYAL 123 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L ++ T + G + + P + D Sbjct: 124 ILAPTRELCLQI-SQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVD 182 Query: 328 YLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +L G + + + + + D ++ Sbjct: 183 HLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGS---------------PAE 227 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + V L + P + L + + Sbjct: 228 RQTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAAL 287 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V+V T T A +L G + LH + +R+ + R E Sbjct: 288 LHL--SPSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSC 345 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV + GLD+P V +V D S + I +GR AR G+A+ + Sbjct: 346 LVATEVGSRGLDIPHVQMVINFDVPL-----SSKEYIHRVGRTARAGRTGRALTIVTQYD 400 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITP---QGLNKKVV--DILALGQNIAKTKAKGRGK 613 + I ++ ++ + + + + ++ A + A K K Sbjct: 401 VEAYQRIEHALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKK 460 Query: 614 SRPIVEPDNVP 624 R + Sbjct: 461 KRGAGNKRSSG 471 >UniRef50_C5DPF6 ZYRO0A02948p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DPF6_ZYGRO Length = 557 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 122/404 (30%), Gaps = 30/404 (7%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL---- 274 + + + + T + +P + + + L Sbjct: 167 DAIVKNLKYHEPTPIQRAAVPNVCNKKFRDLLGIASTGSGKTLAFLIPILMKIDQLPSRP 226 Query: 275 --LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L+ L + ++ E + ++ G + + Sbjct: 227 LVLKKMDGPLALILAPTRELAQQIEKEAEELIDAWGKNCEVASIVGGHSIEEISLQVSQG 286 Query: 333 GLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V I + + + L E + + + QT+ Sbjct: 287 TDILVATPGRLIDCLENHVLTLGKVETLVLDEADRMIDMGFEEQVTSILGNLTQKRQTMM 346 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVR-PVATQVDDLLSEIRQRA 443 +A+ + + G + + V + ++E + ++ + Q Sbjct: 347 FTASMTPGTEKIAAGYLKNPVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYR 406 Query: 444 AINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A +++ KR A+ L + +E +V L+ +R + ++ LR G+ +++ Sbjct: 407 AP---IIIFINYKRAADWLVQKFYKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQIMIA 463 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 N+ GLD+P+VSLV ++ + IGR R + G AI + D P + Sbjct: 464 TNVAARGLDVPDVSLVIN-----FQLSKTFEDYVHRIGRTGRAGHEGTAITFLDDEDPEL 518 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 K + + + L +K + + Sbjct: 519 VKELYKYLQENN-----PTGANNFAPRLKEKYRLGKRRIEEVLY 557 >UniRef50_C5K6D1 RNA helicase-1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5K6D1_9ALVE Length = 733 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 64/450 (14%), Positives = 120/450 (26%), Gaps = 43/450 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + + + H + +E +L Sbjct: 218 KPTPIQCVAIPAAL-SGRDVLAIADTGSGKTLAYLMPLIMHIIYHKE---------HADL 267 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A R ++ + T+ + + Y G + G D Sbjct: 268 ADRPAPTKDHP-ACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYEQFKD 326 Query: 328 YLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +VV I + M L E L +N+ + Sbjct: 327 LRKGTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQRVRP 386 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----------LDPIIEVRPVATQVDDL 435 QT+ SAT + + D V G + + V + Sbjct: 387 DRQTMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDDKFNW 446 Query: 436 L-----SEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEII 489 L + + +VL+ K A +L + E LH D D +RM+I+ Sbjct: 447 LSENLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDRMKIM 506 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 D R + VLV ++ GLD+P V V D + + +GR R + G Sbjct: 507 ADFRSRKTKVLVATDVASRGLDIPAVKEVICYDM-----SNTLTTHTHRLGRTGRAGHTG 561 Query: 549 KAILYGDKIT--PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI------LALG 600 A + MA + E + ++ ++ Sbjct: 562 HATTLLVRKDNSAKMAAELVEFMEKSKQAVSSALMDFALEFPPFAAARELGHSAAKGLRR 621 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +A + G ++ + K Sbjct: 622 AAVAGGPQQRHGLGYSEARGTSMSSGVGKK 651 >UniRef50_A0D232 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D232_PARTE Length = 434 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 54/417 (12%), Positives = 131/417 (31%), Gaps = 28/417 (6%) Query: 187 AFQRGTFR--------VRGEVIDIFPAESDDIAL-RVELFDEEVERLSLFDPLTGQIVST 237 Q+G F+ ++D + + + +VE F++ L + Sbjct: 19 VLQQGQFKSFIQNKKEHLKNIMDQQTQDLQENWIEQVETFEDLTLSKDLLRGIFSYGFER 78 Query: 238 IPRFTIYPKTHYVTPRE--RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + ++ Q+ ++ N+ + + + + Sbjct: 79 PSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAK 138 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGD 354 + ++ G G T + +++ I + Sbjct: 139 QIYDVVKGIGQYLNIEAFCCIGGTSTQET-REKCKQGVHIIIATPGRLIDMMKNKYLDAT 197 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD---- 410 R + E L + + + Q SAT +E S + D Sbjct: 198 FMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSKQFLRDGTAK 257 Query: 411 ----QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + + Q +L E+ + + + ++ +K+ +DL + L Sbjct: 258 ILVKKEQLTLEGIRQFYIAIQQEDQKFKVLVELYKNLTV-SQSILFCNSKKTVDDLYDKL 316 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G V +HS ++ ER +++++ + G +LV +L+ G+D+ ++SLV + + Sbjct: 317 TAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSLVINYEFPRL 376 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + I +GRA R G AI + ++ + + + + + Sbjct: 377 -----KEQYIHRVGRAGRYGRKGVAINMVAQQEANLLLEVEKYYNTKIDEMPKDLAE 428 >UniRef50_C1G4K2 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1G4K2_PARBD Length = 1079 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 56/428 (13%), Positives = 109/428 (25%), Gaps = 48/428 (11%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLEN 277 ++ + + + + I + + + + + LEN Sbjct: 478 TLDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLEN 537 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + +T + ++ E + G P L ++V Sbjct: 538 MEGPIGLIMTPTRELATQIHKECKPFLKA--LNLRAVCAYGGAPIKDQIAELKRGAEIIV 595 Query: 338 DESHVTIPQ----IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 I G + R L E + + +K QT+ S Sbjct: 596 CTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFS 655 Query: 394 ATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRA--- 443 AT + + V G + I+EVR T+ LL+ + Sbjct: 656 ATFPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLGDLYADD 715 Query: 444 -AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + R L+ + AE G G F +L+ Sbjct: 716 NNEDARTLIFVDRQEAAEWSAPRPYAQGLPA---------------------GVFPILIA 754 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ GLD+ ++ LV DA + GR R N G A+ + ++ Sbjct: 755 TSVAARGLDVKQLKLVINYDAPNH-----LEDYVHRAGRTGRAGNTGTAVTFLTEVQERY 809 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + I + ++ + E +KV + Sbjct: 810 SVDISKALKQSGQ--PVPEAVQKMVNSFIEKVKAGKEKASGSGFGGKGLERLDQERDAAR 867 Query: 622 NVPMDMSP 629 N Sbjct: 868 NRERKTYK 875 >UniRef50_C1N6Q9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N6Q9_9CHLO Length = 574 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 101/354 (28%), Gaps = 30/354 (8%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + A +++ T+ + G Sbjct: 178 DLLAIAKTGSGKTLAFLLPALALAAEHKNSSRGSPLALCMSPTRELALQICAEATKFGAA 237 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD--------RARKE 359 R ++ G P L L++ + + M+ A+ Sbjct: 238 VGCRAVAV-YGGAPKWAQASQLQRGCELIIATPGRMLDMLD-MHNKGGNPVTSLASAKVL 295 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL 418 L E L + + E +T+ +AT + + + D+V G Sbjct: 296 ILDEADRMLDMGFEKDIRQIAECMPADRRTMLFTATWPKNVQKIAADLLKPDRVKITVGN 355 Query: 419 ----------LDPIIEVRPVATQVDDLLSEIRQRAAIN----ERVLVTTLTKRMAEDLTE 464 + ++V + + L + + +RV++ TK+ + E Sbjct: 356 GGDKLTANKAVTQTVKVIEAREKWTEFLKLMEEYKKDGPRHGQRVMIFCNTKKDVNGIGE 415 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L G + D ER +I R G ++V ++ G+D+ V V D Sbjct: 416 HLWNEGYAADTVSGDRTQREREAVIAAFRRGSTTMVVCTDVAARGIDVQGVEAVVNYDFP 475 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + I IGR R G A + AK + ++ Sbjct: 476 R----DACDDYIHRIGRTGRAGAKGVAHTLFTRQDGRFAKELTRILEDADQTVP 525 >UniRef50_UPI00003C10F6 hypothetical protein UM00314.1 n=1 Tax=Ustilago maydis 521 RepID=UPI00003C10F6 Length = 594 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 50/313 (15%), Positives = 98/313 (31%), Gaps = 30/313 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ A++ + + + + F + H + Sbjct: 150 FSEPSAIQSQAWPMAL-SGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPG---DGPI 205 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L N +E R ++ G G + P L Sbjct: 206 ALILAPTRELANQIQVECNRFGGSSR-LRTCAVYGGVPKGPQIRDLQRGAEICIATPGRL 264 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + A + +++ + + L + + K + Sbjct: 265 IDMVDAGKTNLRRVTYLVMDEADR-----------------MLDMGFEPQIRKILQQIRP 307 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLS 437 QT+ SAT +G + + G + IIEV + L+ Sbjct: 308 DRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIG 367 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + +A N +V++ T TKR+A+DLT++L + G +H D ER ++ + + G Sbjct: 368 HLETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRS 427 Query: 498 DVLVGINLLREGL 510 ++V + GL Sbjct: 428 PIMVATAVASRGL 440 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 102/659 (15%), Positives = 190/659 (28%), Gaps = 76/659 (11%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 R + L + L G + +A +A L+RP +++ P A + F Sbjct: 24 REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDVVVVA 140 + + +PS + R+ A V V Sbjct: 84 GND---LHRQDVPADRRVWCLPSRSGQKSQSLGK-MATMARRMETLHAFRASIGSNVFVT 139 Query: 141 SVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 S A+ L P++ L + G ++ + L E Y R + G F +RG V Sbjct: 140 SAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGV 199 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D++ LR+E F +E+E + LF P T + + + + P + + + Sbjct: 200 LDVYAPLY-RWPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVIL---DVSAR 255 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + A R+ L Q E E+ + Sbjct: 256 ERAREAVYADVREGRLTPAAGNVWLDKLQ----------EGHQFGAFESIMSVFYEKTV- 304 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV--EYGFRLPSALDNRPL 377 T+++YL ++V ++ + + R PS L P Sbjct: 305 ----TVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIPE 360 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + Q I S + G T + + + + LL Sbjct: 361 RLIADGESFQQLIVNSLSGGTEPRAVFDMG--------TSGHEQLALSVRAHAEKERLLE 412 Query: 438 EI----RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + ++ + K A L+E LE HG + Sbjct: 413 PLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHGTDTVL------------TLLPFG 460 Query: 494 LGEF---DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 + V V + L G P L + + + G R R +GK+ Sbjct: 461 AESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGK------------RTRR-RSGKS 507 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + Y E + +G+ + + G Sbjct: 508 VSGLFLSSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLEY---------QDG 558 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + V + + Q KI +L G + A+ E A ++ ++L L Sbjct: 559 DRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSLYAKR 617 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 56/473 (11%), Positives = 132/473 (27%), Gaps = 55/473 (11%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++ D+ ++ + P + + ++ Sbjct: 641 YEETPDQMRAIDDVLD----------------DMASRRPMDRLICGDVGYGKTEVALRAA 684 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A + Q Q E G+ +E SRF + + Sbjct: 685 FKAVMDGKQVAMLVPTTVLAEQHYQSFTERFE--GFPVVVETLSRFKTP----AQQTLVL 738 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L + VV +H + + E + + + ++ Sbjct: 739 KGLKNGTVDVVVGTHRLLQSDVAFRDLGLL---VIDEEHR-----FGVKHKERMKEMRVS 790 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAI 445 + ++ATP L + + D T D IE + + + Sbjct: 791 VDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAIETFICKYDEFTIREAVYRELRR 850 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +V + + H + + +++ D + DVLV Sbjct: 851 SGQVFFVHNHVQSIYQTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFIRRKIDVLVCT 910 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + I ADK G + Q GR R+ +++ Sbjct: 911 TIIESGLDIPAANTIIINRADKFGLAQI----YQLRGRVGRSSEQAFAYLLIPGEHLISR 966 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + + + G + D+ G ++ V Sbjct: 967 DAQK-------RLRALLDFSELGAGFKIALNDLQIRGGGTILGSSQSG-------HIAAV 1012 Query: 624 PMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAAQIRD-QLHQLRELFIAA 672 ++ + L++ I E++G + + +A + + + + IA Sbjct: 1013 GYELYLELLEKTIKEMKGEERETESIDPEINVPLSAFLPETFIPDKDQRLIAY 1065 >UniRef50_A1TMG8 DEAD/DEAH box helicase domain protein n=4 Tax=cellular organisms RepID=A1TMG8_ACIAC Length = 446 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 52/416 (12%), Positives = 107/416 (25%), Gaps = 42/416 (10%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-QAMEEIKEEL 267 ++ + ++ + F + + ++ + L Sbjct: 24 PTPIQAQAIPAVLDGGDVLG-RAQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRPGAL 82 Query: 268 AARRKVLLENNKLLEEQRLTQRTQ--FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L + L + G + + P L Sbjct: 83 VLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVSINPQLMALRGGADAVVATPGRL 142 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D + + L + + + + + + Sbjct: 143 LDLVEHNALSLSQVRALVLDEADRLLDL-----------------GFAEELQRVLALLPA 185 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSE 438 Q + SAT + G + D + + A + LL + Sbjct: 186 QRQNLLFSATFEPGVARLAEGLLRDPLRIEIAGAPGTAPDIAQRAI-AVEAPRRTQLLKQ 244 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + RVLV T+ AE + E L + G H + R +++++ R + Sbjct: 245 LLTQEPGWTRVLVFVATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQ 304 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VLV +L G+D+ + V D R+ + IGR R +G A+ + Sbjct: 305 VLVTTDLAARGIDIAGLPAVVNYDLP-----RAAADYVHRIGRTGRAGASGVAVSFVTPE 359 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + RR Q E G + A+ Sbjct: 360 AAPHWRLLA----RRHGLQALPVEQ---VAGFEVALAPAAQETGATEDAPARPGKL 408 >UniRef50_C7PZF8 DEAD/DEAH box helicase domain protein n=35 Tax=Actinomycetales RepID=C7PZF8_CATAD Length = 502 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 104/387 (26%), Gaps = 14/387 (3%) Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F + PA + ++L ++ L+ + + Sbjct: 48 GEFALPVSSTPALPAVTAFS--ELDLPGALLQTLAREGLTEPFPIQASTLPNSLAGRDVL 105 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 L AR + L T+ + + + Sbjct: 106 GRGRTGSGKTIAFGLALLARTAGRRAEPREPLALVLVP-TRELAQQVTDALTPYAHAVR- 163 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 L+ G L + +VV I R D+ L E Sbjct: 164 LRLATVVGGISIGRQAHALRSGAEIVVATPGRLKDLIERGDCRLDQVAITVLDEADQMAD 223 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVR 426 + + + A QT+ SAT + D V +E Sbjct: 224 MGFLPQVTELLDQVAPGGQTMLFSATLDRNVDRLVRRFLTDPVTHSVDPSAASVTTMEHH 283 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + D + + A+ V++ T T+ A+ L L +G R LH +R Sbjct: 284 LLHIEGSDKNAAVAHIASREGGVIMFTDTRHGADRLVRDLLANGVRAAALHGGKSQPQRT 343 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + R G+ L+ N+ G+ + + LV +D + + GR AR Sbjct: 344 RTLEQFRGGQVTALIATNVAARGIHIEGLDLVVNVDPP-----ADHKDYLHRGGRTARAG 398 Query: 547 -NGKAILYGDKITPSMAKAIGETERRR 572 +G + + Sbjct: 399 ESGTVVTLVLPNQRRDMTRMMAAAGIT 425 >UniRef50_D2Q2K3 DEAD/DEAH box helicase domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q2K3_9ACTO Length = 554 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 95/405 (23%), Gaps = 38/405 (9%) Query: 178 ELQYARN--DQAFQRGTFRVRGEVIDIFPAE-----SDDIALRVELFDEEVERLSLFDPL 230 + Y TF G ++ A ++ + + + Sbjct: 50 DAGYDEAAATVVSDDLTFADLGLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRG 109 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F + + L L LT Sbjct: 110 R-TGSGKTYAFVLPLIARL---ATSGTRRRPNQPRALILAPTRELATQIQASISPLTDAF 165 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 M G G + P L D++ A + + + M Sbjct: 166 G-LRTMTVFGGVGHGPQITGLRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHM 224 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + E Q + SAT + Sbjct: 225 ADL-----------------GFLPAVRRLLEATPATGQRLLFSATLDAGVDVLVKRFMRS 267 Query: 411 QVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 V + + Q D L + AA R LV T TK A+ LT+ L Sbjct: 268 PVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDLAAAPGRTLVFTRTKYGAKSLTKKLI 327 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 G LH ++ R + G LV ++ G+ + +VSLV D Sbjct: 328 AQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVATDIAARGIHVDDVSLVIHADPPI-- 385 Query: 528 FLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 ++ + GR AR G + + + Sbjct: 386 ---EHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVRDLTRKAGI 427 >UniRef50_Q5CWY8 Rok1p, eIF4A-1-family RNA SFII helicase n=3 Tax=Cryptosporidium RepID=Q5CWY8_CRYPV Length = 480 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 62/401 (15%), Positives = 119/401 (29%), Gaps = 42/401 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 A++ ++ + + + + + Sbjct: 109 YQKPTAIQSQVIP-LLFSGVDLLVQSPTGSGKTLCYILPILGRLKNDKV--------YCA 159 Query: 266 ELAARRKVLLENNKLLEEQRLT-QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + E + + + E+ ++ L P Sbjct: 160 NLILSPTRELAQQIVREIKIILDIHGKKYRCRYISGKIDKAQESNTKRL--DIAVSTPYR 217 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + S + + ++ + A + + +P Sbjct: 218 LADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSNIPKG------------- 264 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIR 440 Q SAT + + + V G II+ T+ D + +R Sbjct: 265 GKVQIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKIESLR 324 Query: 441 QRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 Q + LV T +K A+ L + L V +HSD+ V+R II+ R G+ Sbjct: 325 QLIKQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFRTGKI 384 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +L+ +L+ G+D VS V D S + I +GR R G AI + Sbjct: 385 WILICTDLMARGVDFKNVSCVVNYDFPH-----SPSNYIHRVGRCGRAGRTGYAITFFTL 439 Query: 557 ITPSMAKAIGETERRREKQQKYN----EEHGITPQGLNKKV 593 K+I + + + + I KK+ Sbjct: 440 RDIPKIKSIAKVIKSSGADVPSWMLKVKLNNIKKSHFKKKI 480 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 100/667 (14%), Positives = 197/667 (29%), Gaps = 96/667 (14%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + I+ L+ L G L S A + A++ T+++ P Sbjct: 3 TKPLIELLSKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRP 62 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKD-ASVNEHIEQMRLSA 126 A + + + + + P+ D + AS + RLSA Sbjct: 63 EEAQNVADSLSTYLWD------------PKRVLLWPAHDDLPYERIASPTQDSPFRRLSA 110 Query: 127 TKAMLE--RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + +L R +++VASV +I + + G +D A+ R+AEL Y+ Sbjct: 111 LERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSP 170 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F RG + DI+ SD + +R+ELF +EVE + LFDP T + I F+I Sbjct: 171 VASVEEVGQFSRRGGIFDIWTPSSD-LPIRLELFGDEVESIRLFDPETQRSTREIESFSI 229 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 E + + L + + +T + LE ++ Sbjct: 230 ISPYEI-------------PVAEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLP 276 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + + L DYL ++ D + Sbjct: 277 AIHSIIAPYFPSGL-----GNLLDYLSEGTIVFTDLPDRLALTASTL---------RSHI 322 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G RL ++ + + + V G L Sbjct: 323 EGMRLEMEQSGDIPSNLLSP------VFEWSYIEDRLKALPKI---EPVNSAEGNLK-FY 372 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + D++ +R V + T + +EH L D+ Sbjct: 373 PAPQIRSSTIDIVDNLRSWIDEGRTVFIVTRHHERIRHVA---KEHNLP-LALDEDVKQG 428 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + + ++ G +++LV + D + G+ R+ Sbjct: 429 QMFIVPGSIQD--------------GWICDDINLVVLSDTELWGYREP------RRARSP 468 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R + + D S + + G ++ + + G + Sbjct: 469 RKAPQR-VFLADLQPGSYVVHVDHGVAKYVGNV------MRGSSGAEREYLVLEYAGGDR 521 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P+ + D + + + + L + + A Q+ +L Sbjct: 522 L---------YVPVDQIDRISPYIGGG--EPALSRLGTADWARTKRRAKKAADQLAKELL 570 Query: 664 QLRELFI 670 QL Sbjct: 571 QLYAARE 577 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 57/459 (12%), Positives = 127/459 (27%), Gaps = 45/459 (9%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L + P + + ++ A + Sbjct: 605 DQLAAIEDVKADMESPKPMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLAL 664 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + N G + + R + + + L + +V +H + + Sbjct: 665 QHYETFRSRFNPFGIRVEMLSRLRTK------KERDQVLEDLQKGNVDIVIGTHTILQKN 718 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + + ++ATP L+ + Sbjct: 719 VVFKDLGLVIVDEE--------QRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSG 770 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYL 466 V D V T D + + + D ++ + I + +V + + L Sbjct: 771 VRDMSVIETAPEDRLPVYTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKL 830 Query: 467 EEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +E H + + +++ D +DVLV ++ GLD+P + + + DA Sbjct: 831 QEMVPEARITVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDAT 890 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R+ N + M + + + + E Sbjct: 891 HMGLAQ----LYQLRGRVGRSSNRAYAYLMYRPDARMTEDAQK-------RLEAISEATQ 939 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE---- 640 G + D+ G + + +++ + +++ + EL Sbjct: 940 LGAGFRVAMKDLEIRGAGNFLGPEQSGHVY-------AIGLELYTQMIERAVQELRTGQP 992 Query: 641 -GLMMQHA-----QNLEFEEAAQIRDQLHQLRELFIAAS 673 L E RD +L + S Sbjct: 993 ISEPPAVTIDLPIPALIPEHYVSDRDTRIRLYRRLASTS 1031 >UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54CB8_DICDI Length = 573 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 118/389 (30%), Gaps = 48/389 (12%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + S ++ F + H + + L Sbjct: 161 KPTPVQSLGWPIAL-SGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYP---GPSVL 216 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMN--ELGYCSGIENYSRFLSGRGPGEPPPTL 325 L N E Q + + G + + P + Sbjct: 217 VVAPTRELANQINQEA---EQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRI 273 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ + L + + S + + + + + + + Sbjct: 274 IDFMESGDLSLKNISFLVVDEADRL-----------------MEMGFEQQIDGIFNSIRP 316 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVA-TQVDDLL 436 Q +Y SAT + + + G + ++ P +VD L+ Sbjct: 317 DRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALM 376 Query: 437 SEIRQR--AAINERVLVTTLTKRMAEDLTEYLEEHG--ERVRYLHSDIDTVERMEIIRDL 492 + + A + L+ T+TK+ A+ L Y++ +G R+ LH D+D R I++D Sbjct: 377 DTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDF 436 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + D++V ++ GLD+ +S V + + IGR R G + Sbjct: 437 KNKRLDIVVATDVASRGLDIKGISHVIN-----FSLPSDCETYVHRIGRTGRAGALGTSH 491 Query: 552 LYG---DKITPSMAKAIGETERRREKQQK 577 + + +R E++ Sbjct: 492 SILSNNSLDDMELVGDLTNLLQRSEQEVP 520 >UniRef50_B8BZG6 RNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BZG6_THAPS Length = 466 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 51/381 (13%), Positives = 109/381 (28%), Gaps = 40/381 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV----------TPRERIVQA 259 ++ + V + F + T V R+ + Sbjct: 10 TPVQAKAM-SPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQGRDGSTRM 68 Query: 260 ME-EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + + L E + + + G + + Sbjct: 69 RKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFH-GGVSYDPQARALRQGVDVI 127 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P + D++ L + + V + + M A ++ G + Sbjct: 128 VGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR------- 180 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT------GLLDPIIEVRPVATQV 432 Q + SAT + E D + + + + Sbjct: 181 ------EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPF 234 Query: 433 --DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 D + + A+ + +V T TK+ A++L + +H DI +R + Sbjct: 235 GADAKKAILEDIIALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLA 294 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGK 549 R G F+VLV ++ G+D+ +V LV + R + + GR R +G Sbjct: 295 AFRAGAFNVLVATDVAARGIDIKDVDLVIQFEPP-----RDVDTYVHRSGRTGRAGASGI 349 Query: 550 AILYGDKITPSMAKAIGETER 570 ++L + I ++ Sbjct: 350 SVLLFQQNQARDIVRIEKSLG 370 >UniRef50_Q6BML1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=11 Tax=Saccharomycetales RepID=PRP5_DEBHA Length = 913 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 52/457 (11%), Positives = 120/457 (26%), Gaps = 34/457 (7%) Query: 218 DEEVERLS--LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA--ARRKV 273 + + + + + I + + L + + Sbjct: 324 PSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQP 383 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ +T + L++ EL + + + G + L Sbjct: 384 PLKKGDGPIGLIMTPTRELALQIHKELNHFTKK--LNISSCCCFGGSSIESQIAELKKGA 441 Query: 334 LLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 ++V I + G + R L E + + K QT Sbjct: 442 QIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQT 501 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVAT-------QVDDL 435 + SAT + + + + G + +E+ + L Sbjct: 502 VLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKL 561 Query: 436 LSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 LS + + ++L+ + A++L L +H D ++R IR+ Sbjct: 562 LSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFS 621 Query: 494 LGE--FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKA 550 ++L+ ++ GLD+ ++LV +A + +GR R G A Sbjct: 622 SSNSGVNILIATSIAARGLDVKGLNLVINYEA-----ASHMEDYVHRVGRTGRAGRKGTA 676 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I + + + R + + I + V N + Sbjct: 677 ITFVSSKQGRAITDLVKAMRLSKVSEDEINPRLIEISTKFLEGVKSGKEKYNFGFSGKGL 736 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 ++ + + + Sbjct: 737 DNLQEIRESNRDLERKVYGEENDSSTFKANEKKQNKT 773 >UniRef50_Q0IH66 Ddx10 protein n=6 Tax=Euteleostomi RepID=Q0IH66_XENLA Length = 663 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 61/446 (13%), Positives = 121/446 (27%), Gaps = 28/446 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE-NNKLLEEQRLTQRT 290 + + + ++ L ++ Sbjct: 97 PTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALECLYRQQWTSDDGLGVLIISPTR 156 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG- 349 + + L +S L G+ +++ + + Sbjct: 157 ELAYQTFEVLRKVGRNHEFSAGL--VIGGKDLK-QETACIHRTNILICTPGRLLQHMDET 213 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + L E L + E QT+ SAT + + + Sbjct: 214 SFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSL 273 Query: 409 VDQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 D L+ V + +++ L S IR ++ +V + + Sbjct: 274 KDPEYVWVHEKAKFSTPATLEQNYIVCELQQKINLLYSFIRNHLK--KKSIVFFSSCKEV 331 Query: 460 EDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 + L G V LH +RME+ D + VL ++ GLD P VS Sbjct: 332 QYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKSAVLFATDIAARGLDFPAVSW 391 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 V LD + I +GR AR G L PS K + + ++ Sbjct: 392 VLQLDCP-----EDANTYIHRVGRTARYKEGGEALLVLL--PSEVKGMAKQLEEKKVPIN 444 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP--IVEPDNVPMDMSPKALQQK 635 + + + ++ LA Q++ +T + + + D+ L Sbjct: 445 EIKINPEKLLDVQGRLEAFLAQEQDLKETAQRCFVSYLRSVYLMKNKEVFDVFKLPLTPY 504 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQ 661 L + + L +A + Sbjct: 505 AQSLGLAVAPRVRFLLKAQATSASKE 530 >UniRef50_UPI00003C8469 DEAD box protein n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI00003C8469 Length = 430 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 58/372 (15%), Positives = 111/372 (29%), Gaps = 21/372 (5%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L L + + + + + K ++ Sbjct: 10 SLGLMKFTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSV--EKLKGKSVK 67 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + L+ I + G + LP +V+ Sbjct: 68 AIIILPTRELALQTHRVASRLGKIS--GIKSTIVYGGASIIRQVEELP-GSDIVIGTPGR 124 Query: 343 TIPQ-IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 + + D + L E L + K F QTI +SAT Sbjct: 125 ILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILLSATLPAEVK 184 Query: 402 EKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 + + + G + + V + L+S I + + +V Sbjct: 185 TIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDKFSTLMSYIHSYNSR--KAIVFVK 242 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+R + L L G +H + R I D R + +LV N+ GLD+P Sbjct: 243 TQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVATNVAARGLDIPN 302 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRRE 573 ++ + DA S + +GR+ R +G+A+ D S+ ++I R + Sbjct: 303 ITDIINFDAP-----DSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSLIQSIQRRNRIKM 357 Query: 574 KQQKYNEEHGIT 585 ++ + E T Sbjct: 358 EKINIDLETEYT 369 >UniRef50_A5EYB1 ATP-dependent rna helicase Rhl n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EYB1_DICNV Length = 432 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 52/429 (12%), Positives = 108/429 (25%), Gaps = 35/429 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + + + F + + +T Sbjct: 29 FTKTTPIQAQTLPLTLAGYDVMGI-AQTGTGKTAAFLLSLMHYLMTNPVHPKAK---GPW 84 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + L E L T + + + + P + Sbjct: 85 AIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQACNVDVIIGTPGRI 144 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D +R L E + Sbjct: 145 IDLFKQKV-----------------FRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPP 187 Query: 386 --APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIR 440 + SAT E + V I T + + Sbjct: 188 AYERLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTPLLL 247 Query: 441 QR--AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ER ++ TK E L+ L +G L D+ +R +IIRD + G + Sbjct: 248 GLFARERPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVN 307 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 ++V ++ G+ + ++ V D + + IGR AR +G AI + + Sbjct: 308 IVVATDVAARGIHIDGITHVFNYDLP-----QIAEDYVHRIGRTARAGASGTAISFACEE 362 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 I + + E + + + +D + ++ + RG +P+ Sbjct: 363 YVYSLPEIEHFLGEKIPVKPIEESLIVDVIPPSDEALD-ALRNEKESRIRIHNRGNRKPM 421 Query: 618 VEPDNVPMD 626 + Sbjct: 422 TKSIRRRRY 430 >UniRef50_B3L277 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L277_PLAKH Length = 906 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 54/372 (14%), Positives = 110/372 (29%), Gaps = 35/372 (9%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI-----VQAMEEIKEELAARRKVL 274 ++ + F T+ + + + L Sbjct: 549 IIKNKMNLIASSQTGSGKTFSFLCPVITNLIEDNDTLRPHFPGAYACVFPLGLVLCPTRE 608 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L L E LT+ + P L D + + + Sbjct: 609 LVLQILNEVNSLTKNMELVCMAFYGGETMKDQIVQINERQADIIVSTPGRLLDLMNSCKV 668 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + ++ + M + + + L + A QTI +A Sbjct: 669 SLSFVKYLIFDEADEMISLGLKEQMDAILFEKDL-------------CASEARQTILFTA 715 Query: 395 TPGNYELEKSGGDVVDQ-VVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 T + E + V + +++ P + D+LL +++ Sbjct: 716 TFSDSLREDIEKFMGTPYVFLNITQKREVQNSIKQVVKYVPAKCKQDELLKDLKPLQ--- 772 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ + + L+ +G +V YLH + V R ++ + R EF +LV ++ Sbjct: 773 GQAIIFVELRSSINYIFSALKSNGYQVNYLHGKMSQVRRQDVFQQFRDREFQILVATSIA 832 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD P++ LV D + IGR R G AI Y + + + Sbjct: 833 ARGLDFPDLELVINYDLP-----AEFEQYMHRIGRTGRIGKTGLAINYFNSSNKKIIDKL 887 Query: 566 GETERRREKQQK 577 + R+ + Sbjct: 888 IDHLRKHNQTVP 899 >UniRef50_C5L4T1 ATP-dependent RNA helicase dbp-10, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5L4T1_9ALVE Length = 977 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 50/406 (12%), Positives = 108/406 (26%), Gaps = 45/406 (11%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L D + + + I + V + K Sbjct: 37 LSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQILKGH- 95 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 L+ + ++ + + L G + FD L ++ + Sbjct: 96 SEVVGARAVILSPTRELAMQTIKVTRMLGKFTD--LRLCLIVGGHSMESQFDRLSSNPDV 153 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ + + R + E + + + Q + SA Sbjct: 154 LICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFSA 213 Query: 395 TPGNYELEKSGGDVV---------DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA- 444 T + + S + D + LD ++ L++ +R+ + Sbjct: 214 TLPSQLTQFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKLQSM 273 Query: 445 -------------------------INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + + +V T+ E L + G ++ Sbjct: 274 SNKSTGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAPIYGS 333 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 +D +R + R G+ VL+ ++ G+D+P++ V D S + + Sbjct: 334 MDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFP-----SSSKLFVHRC 388 Query: 540 GRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 GR AR G A + R+ Q +H I Sbjct: 389 GRTARAGAKGLCASLVTHDDMPYAVELMLFLGRKLGLQALGSDHPI 434 >UniRef50_Q23WN3 Helicase conserved C-terminal domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23WN3_TETTH Length = 602 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 60/477 (12%), Positives = 135/477 (28%), Gaps = 29/477 (6%) Query: 117 EHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLT-VGMIIDQRAILRR 175 + + R+ T + + + + K + L ++ Sbjct: 72 KEQIKERVKTTWRIPKA--------YRTVTQREIQKVLKKYSVLLEGQNTPPPIQSFEVN 123 Query: 176 LAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQI 234 L Q++ + ++I I + +++ V + Sbjct: 124 LLIAQFSHQYSLIVLKEMKFPKKIIAILKEKKVKKPTPIQMVGLPTVLLGRDMIGIAPTG 183 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 F + + + E + E ++ Sbjct: 184 QGKTIVFLLPALVMAIEHEMNMPLFRGEGPLAIIIVPSTY-ELACYYSQKLQEAGYPQIR 242 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL-----VVDESHVTIPQIGG 349 ++ G + + + + ++ +V T + Sbjct: 243 CSLSIGGMDMMQQIAQVREGVH-LIKYYGLMNNTFEIYEVVELQLDMVGTPGRTSDMVDK 301 Query: 350 -MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + R L E L + + A QT+ S+T + + + Sbjct: 302 QKFNMNLCRYIVLDEADRLLDMIFEKEIRNIIDHVPGARQTLLFSSTMPKKVQDFAKQAL 361 Query: 409 VDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 +D ++ G + I+ Q + L I VL+ +D+ E Sbjct: 362 IDPIIVNVGRAGQVNLNVIQEVEYVKQEEKLQYLISCLQKTKPPVLIFCDKSNDVDDIHE 421 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL G V LH ER + +++ + + DVLV ++ +GLD P V V D Sbjct: 422 YLLLKGIDVTSLHGGKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHVINFDMP 481 Query: 525 KEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETERRREKQQKYN 579 + S + IGR R G+A + + + ++ + ++ + Sbjct: 482 -----KEIESYVHRIGRTGRLGKTGRATTFVNKQQDENILSDLKMLLMEAKQPIPHF 533 >UniRef50_A8JGT1 RNA helicase n=2 Tax=Eukaryota RepID=A8JGT1_CHLRE Length = 737 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 64/488 (13%), Positives = 137/488 (28%), Gaps = 49/488 (10%) Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 EL R + Q + + +FP ++ + E Sbjct: 103 ELGLDRFKLSEQVKSMLRSQNIESLFPIQAMTL--------EPAMEGLDVVGRARTGCGK 154 Query: 238 IPRFTIYPKTHYVT-PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLE 295 FT+ + + + + E K ++E T + Sbjct: 155 TLAFTVPVVERIIAEQKSGSGIGRGAGRLPVCIVLAPTRELAKQVQEVFANTGKAANLYT 214 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR 355 M G + + P + D L L + + + ++ M Sbjct: 215 MCVYGGTPYDGQEQALSRGVDVVVGTPGRVKDLLERGTLKLSNIRFRVLDEVDQML---- 270 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAP---QTIYVSATPGNYELEKSGGDVVD-Q 411 + QT+ SAT + + + Sbjct: 271 -------------AMGFIEDVETILKQGENNRDQIQTLLFSATLPKWVQGLTQRFLRPGH 317 Query: 412 VVRP-TGLLDPIIEVRPVA-------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 G V Q LL ++ R ++ T +K+ A +L+ Sbjct: 318 KFLDLVGDDRMQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGGRTIIFTDSKKEAAELS 377 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L + + LH D+ R + + R G F +L+ ++ GLD+ + LV ++D Sbjct: 378 VVLGDS-LGAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAARGLDVTGIELVLMVDP 436 Query: 524 DKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + I GR R +G + K M I + + ++ + Sbjct: 437 P-----ADWETYIHRSGRTGRAGSSGVCVTLVTKKMEYMVPIIEKRAGMKFERIGAPQPA 491 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + + + + + + + D +AL + + ++ G Sbjct: 492 DMARIAAERTLSLLGEVDPAVVGHFREAAERYLSESAADGRDP---AEALARALAKITGY 548 Query: 643 MMQHAQNL 650 + A++L Sbjct: 549 KVMKARSL 556 >UniRef50_A4S6M9 Predicted protein n=3 Tax=Ostreococcus RepID=A4S6M9_OSTLU Length = 755 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 61/470 (12%), Positives = 125/470 (26%), Gaps = 49/470 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + F + + Sbjct: 168 YKKPTPIQAAVIP-IAMTGRDVCGRAVTGSGKTAAFMLPQLERMLH----RGPRPAAATH 222 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + L Q T ++ G + ++ + P Sbjct: 223 VLVLVPTRELAVQVHQMTESLAQFT-TIRAVLVVGGLSANVQAAALRTRPEIVVATPGR- 280 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL--VEYGFRLPSALDNRPLKFEEFE 383 I + + TL E L + Sbjct: 281 -----------------VIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQC 323 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---------QVDD 434 QT+ SAT + + + L + Q + Sbjct: 324 PKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEA 383 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L I + ++ ++ + TK+ A L + + LH D+ +R+ + + R Sbjct: 384 FLMAIVS-RSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRT 442 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G L+ ++ GLD+P V V DA ++ S + +GR AR G A+ + Sbjct: 443 GTVTHLIATDVAARGLDIPSVDAVISFDAP-----KTLASYLHRVGRTARAGKKGTALTF 497 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 ++ + K I + R K G +KK+ D+ I + R Sbjct: 498 MEESDRKLVKTIAK----RGANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQL 553 Query: 614 SRPIVEPDNVPMDMSPKAL---QQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + +E + + A + + + + +A + + Sbjct: 554 QKAEMEANKASNILEHAAEIKSRPAKTWFQSERDKRNAQKDALKAMETAE 603 >UniRef50_Q6F0U0 ATP-dependent RNA helicase n=1 Tax=Mesoplasma florum RepID=Q6F0U0_MESFL Length = 666 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 104/346 (30%), Gaps = 18/346 (5%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 +E NK + + T+ + G + ++ Sbjct: 43 GKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIA 102 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALD 373 G L D +VV + + D R L E L Sbjct: 103 PLIGGADMRDQIKRLK-DSQIVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFK 161 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVR 426 N E + Q SAT ++ + + + V + Sbjct: 162 NEIDALFERVSPDVQIGLFSATTSPKVMQIANDYMNEYDVIEIENQIEVNANITNTFIFT 221 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 ++ D ++ ++ +R +V + TK + + + LE G R ++ D +R Sbjct: 222 KGFSKEDLIVKVFKKHK--PKRAIVFSNTKNHTDKIADNLEAAGIRAIVINGDKRQSQRS 279 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 I R E VLV +++ G+D+ V V D + + IGR RN Sbjct: 280 RAIAKFRNNEISVLVATDVVARGIDITGVDYVINYDV-----SMEDEHFVHRIGRTGRNN 334 Query: 547 -NGKAILYG-DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 G +I + ++ K I + + + +E + Q Sbjct: 335 TKGDSITFVQNQNVLRQIKGIEKNFNLIIDEMQISEYGEVDKQEGR 380 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 97/669 (14%), Positives = 193/669 (28%), Gaps = 96/669 (14%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + + +L+ L G ++ S + +A + + RP +++ + Sbjct: 3 INRVAAQLLSAPELEKLKRELSCGSDATL--SLSQSARPLMLAALWSQNPRPCLLVVAGE 60 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + + +AV P+ + DA+ ++ I R A Sbjct: 61 DAADRTARSLAAWLGNDAVLR-------------YPNRKDYPWSDATPDDAIIGARCRAI 107 Query: 128 KAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 + V+VVAS A+ P + TVG + + L + YA + Sbjct: 108 AKLSAGEKVIVVASAHALMRRVPPVGSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGE 167 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 GTF + G+ +DIFPA++ +R+E F +E++R+ TGQ + I T+ P Sbjct: 168 VDAPGTFHIHGDTVDIFPAQA-TSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPA 226 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 E I+ A EN+ + + L QR + Sbjct: 227 RELAF-------TKEAIRRAEEALYTRAQENSAIAADLELIQR----------GAQAPAL 269 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 E Y L G P +++ ++ L+V+ E + Sbjct: 270 ERYLPVLYG--GTASP---LEHISSETLVVLAEPRSLFDDCQRAFDE------------- 311 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG---LLDPII 423 A + + T S + + TG + + Sbjct: 312 ------------ISSSAAASKVKLDGLYTDPKAMDFGSQQRLSFSSLLRTGAAVTSELSV 359 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 +A LL +RQ + V+ + E L + Sbjct: 360 VQPSIAGSDTKLLGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLEN 419 Query: 484 ERME--IIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + + L+ G + + G+ +P +L + +D + + I Sbjct: 420 EPDQNGVYVPLKRGRVTF---TDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKRID 476 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + + K + G + + Sbjct: 477 PT-------TVTF-------PFKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYAN 522 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P+ + D + + P ++ L A N + A ++ Sbjct: 523 DDKL---------YVPLEQVDRITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAF 573 Query: 661 QLHQLRELF 669 L L Sbjct: 574 DLVDLYTRR 582 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/505 (12%), Positives = 136/505 (26%), Gaps = 54/505 (10%) Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESD---DIALRVELFDEEVERLSLFDPLTGQI 234 +L + D +R + +D PA+ + ++ D + Sbjct: 570 KLAFDLVDLYTRRASVPGYAFSLD-TPAQEEMESSFPYQL-----------TPDQESAVA 617 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + P + + ++ A + Q + Sbjct: 618 DIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDARQVMILCPTTILAQQHYETFF 677 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 + SRF++ + + V+ +H + + Sbjct: 678 SRFAPF--DLKVSVLSRFVTP----AQQRKALEGFADGTIDVLVGTHRLLSADVNPHDLG 731 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 + + + + + +SATP ++ + V D + Sbjct: 732 LVIIDEE--------QRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLI 783 Query: 415 PTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE-- 471 T V DL+S IR +V + ++ +EE Sbjct: 784 LTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEAAPEA 843 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 RV H + E ++ + E DVLV ++ G+D + + I D+ + G + Sbjct: 844 RVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGLAQ- 902 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L Q GR R + + E R ++ G G+ Sbjct: 903 ---LYQLKGRVGRGRQQAYAYFMFPAELP----LTEEATERLTAINEFQDLG---SGMRI 952 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + D+ G + S +V D+ + L + + E G + Q Sbjct: 953 AMRDLEIRGAGSLMGAEQHGNLS-------SVGFDLFTQMLGEAVAEARGESAELEQTEV 1005 Query: 652 FEEAA----QIRDQLHQLRELFIAA 672 D L ++ + Sbjct: 1006 TINLPADFFLDEDYLPEVDRRVLVY 1030 >UniRef50_C1ECQ6 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1ECQ6_9CHLO Length = 401 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 44/381 (11%), Positives = 91/381 (23%), Gaps = 41/381 (10%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI------KEELAARRKVLLE 276 + F + + + L Sbjct: 36 AGRDAIAVAKTGSGKTLAFLLPILHRMEARAATPADESSAPASSVPEPDAMVLAPTRELA 95 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 E + T+ + G + +V Sbjct: 96 LQIHAEADKFGAATR-AGAVAVYGGAPLHKQKEEL-------VAAHGRRKRGAATGT-VV 146 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA---PQTIYV 392 V + R L E L + + + + QT+ Sbjct: 147 VATPGRLCDLMKQGSLSLRRCDFIVLDEADRMLEMGFEPQLKEIFGELPSSESGRQTLLF 206 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGL--------------LDPIIEVRPVATQVDDLLSE 438 +AT + + + G + + + Sbjct: 207 TATWPKAVRKMAASYLAKDTESSEGNGDGGDGAELAANKAVSQRFVHATDDEKDKKMYDV 266 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + RV+ TKR E+L + + G +H D ER ++ + Sbjct: 267 LC-ELPEGSRVVAFANTKRRVENLAKTFWDFGFGTVSVHGDKKQNEREAALKKFVDNQCP 325 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 ++ ++ GLD+ V+ V D R S + IGR R G+++ + + Sbjct: 326 LMFATDVAARGLDIKGVTHVVNFDM-----ARDVESYVHRIGRTGRAGELGESVTFWNPD 380 Query: 558 -TPSMAKAIGETERRREKQQK 577 A A+ + R ++ Sbjct: 381 YDKECAPALCKIARDAGQEVP 401 >UniRef50_C4Q9A6 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q9A6_SCHMA Length = 625 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 60/494 (12%), Positives = 124/494 (25%), Gaps = 69/494 (13%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ + F + ++ + Sbjct: 146 DKPTPIQCACIPVALLH-RDICACARTGSGKTLAFLLPVLERL---AKKSTDFNHAVTRA 201 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L ++L + + G + S L+ P L Sbjct: 202 LVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHSQEASLRLNPDLVVATPGRLI 261 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D+L + L E L + + +F + Sbjct: 262 DHLSNAP----------------SFNLQHIEYLVLDEADKLLDEYFAEQIGEIIKFCSTK 305 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------DPIIEVRPVATQVDDLLSE 438 QT+ SAT E + + D V + +RP + Sbjct: 306 RQTLLFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHREDDRRAIVI 365 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL------ 492 +R +V TK+ + L G LH ++ +R+E ++ Sbjct: 366 ALLMRHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRLEALKRFSYVGTS 425 Query: 493 ---RLGE---------------FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 + D+L+ +L GLD+P V V ++ + Sbjct: 426 DECKNKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINY-----TLPQTMKQ 480 Query: 535 LIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + +GR AR G+A+ + + K I ++ K K+ Sbjct: 481 YVHRVGRTARIMNVGRAVSLVGEDDRKVMKEI---MKQAPYPVKARVIASDVIATYQSKI 537 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVP-----MDMSPKALQQKIHELEGLMMQHAQ 648 + + I +A+ R + M L + + Sbjct: 538 TRLEPIIGKILAAEAEERELRAAQSQLSKAEELVSCMKSGTTPLSCVERRV---DWFAER 594 Query: 649 NLEFEEAAQIRDQL 662 + + +I ++ Sbjct: 595 KRDKKTIGRISKEI 608 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 59/435 (13%), Positives = 126/435 (28%), Gaps = 35/435 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF+E D L+ P + + ++ A Sbjct: 518 LFEESFPYEETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQ 577 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + Q + M++ LS + + + + Sbjct: 578 VAIVVPTTVLAQQHFHSFSQRMSDFP------IKIATLSRFISKKDQKQVLKEMAEGEVD 631 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 +V +H + + + + + + + + +SAT Sbjct: 632 IVVGTHRLLQKDINFQKLGLLVVDEE--------QRFGVESKEALKRMRVNVDILSMSAT 683 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTL 454 P L S + D T + V + D+++ IR+ +V Sbjct: 684 PIPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVTKENDEIIEVAIRRELERGGQVYYLHN 743 Query: 455 TKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + E++ L+ L H +D E ++ + G+ +LV ++ G+D+ Sbjct: 744 RVKTIENVALKLKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDI 803 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 + + I AD+ G SL Q GR R+ AI + + R Sbjct: 804 RNANTMVIDRADRFGLS----SLYQLRGRVGRDHRQAYCYLLMPRDE----AIMDNAKER 855 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + +H G + D+ G + V ++ + L Sbjct: 856 LSALR---KHTHPGAGFKLAMRDLEIRGAGNMLGSQQSG-------HIAAVGFELYCQLL 905 Query: 633 QQKIHELEGLMMQHA 647 ++ + +L+G + Q Sbjct: 906 KKSVEDLKGSIHQDT 920 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 79/194 (40%), Gaps = 8/194 (4%) Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE---HIEQMRLSATKAMLE- 132 + F + E + + YQ + +P+ D + + + ++ I+ R +L+ Sbjct: 45 LCVFETSSKAESCFNEFKKYQSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQLLQN 104 Query: 133 -RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQ 189 V++ SV+++ + P L L L + + E+ + Q Sbjct: 105 RGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSL 164 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG ++D+F +R++ FD+E++ L LFD + + ++ + + P Sbjct: 165 PGEFSLRGGILDVFSP-DQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVEKC 223 Query: 250 VTPRERIVQAMEEI 263 I++ ++ Sbjct: 224 GLEPRGILEYIKGF 237 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 60/263 (22%), Gaps = 57/263 (21%) Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 V R T +E L+ ++ + V V ++ E L E LE Sbjct: 294 PVYRSTLPE---VERSIHQAHQKFLIDRVKSWINKSWSVHVFCGSEAGVERLNEVLELGN 350 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + ++L+ L G +PE+ + + + G Sbjct: 351 -------------------------KKNLLLYPVSLHYGFIVPELKYAVLSEQELFGRPI 385 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSM---AKAIGETERRREKQQKYNEEHGITPQ 587 E + + +Y Q Sbjct: 386 EET-------------KDVSYSSQLQKNLEYEPELNEGDFAVHANYGICRYLGIKVKNSQ 432 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 + A R P+ + + K K+ L Q + Sbjct: 433 EF-------------LLLEFADDRKLYLPLDSSHLLMRYIGGKKSVPKLARLGTGFWQKS 479 Query: 648 QNLEFEEAAQIRDQLHQLRELFI 670 + A +L +L+ Sbjct: 480 LDKAENSARDYAAELLRLQAARE 502 >UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG7_ENCCU Length = 503 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 124/385 (32%), Gaps = 33/385 (8%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 I+ ++ + + + + + + Sbjct: 118 SAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCFLIPII-----ERHRQMKKPQACIISP 172 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ E + + R +S G + P+ + +VV I + Sbjct: 173 TRELCEQIRVEASKLVAGSRIRVVSIYGKKQDLPS-----YSGVDIVVATPGRLIDLLHR 227 Query: 350 M-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 R L E L + + F QT SAT + Sbjct: 228 KKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMINYFL 287 Query: 409 VDQ---VVRPTGLLDPII-EVRPVATQVDDLLSEIR----------QRAAINERVLVTTL 454 + + + L I E+ V + LL+ ++ + ++VLV Sbjct: 288 PEDKVSIEISSETLKNIRQEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVE 347 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 K ++ + L++ G LH D + +R E ++ R G F V+V ++ G+D+ + Sbjct: 348 RKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKD 407 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD-KITPSMAKAIGETERRR 572 V LV D + + I IGR R +GK+I + D +T + KA+ E R Sbjct: 408 VKLVINYDIP-----KDIKEYIHRIGRTGREGKSGKSISFYDGGMTADLKKALVEVLRES 462 Query: 573 EKQQKYNEEHGITPQGLNKKVVDIL 597 + G + + N + + Sbjct: 463 KNAVPPF-LTGASDEDFNARFERLK 486 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 108/665 (16%), Positives = 219/665 (32%), Gaps = 80/665 (12%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S F ++ R+LE+ + ++G++ K + + P +VL ++ Sbjct: 2 SIFHEILNKLPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEA 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L + + A P+ D +V+ E +RL+ Sbjct: 62 NAKKLSDDYNQMAGGE-------------LSAVYPAKDFTFRPIETVSREYEYIRLNVLS 108 Query: 129 AMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ R+ VV A + +A+ P L+ + G + ++ LA Y R Q Sbjct: 109 RIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + VRG ++D FP + +RVE + +E++ +S F+ + + + + I P T Sbjct: 169 DGSAQYSVRGGIVDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + + D++ ++ S I+ Sbjct: 228 EIIFSSPEQLREGINGLI---------RSLGSSPQADAAKLKLSNDIKRIDGGLDLSNID 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y R P TLFDY + LL V E + + L+E G Sbjct: 279 KYIPLAYDR-----PATLFDYFES-PLLFVSEWSDLKESARAYEFQYQEDLKILLEEGEL 332 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LD+ F Q V + D+ + + ++ Sbjct: 333 CK-GLDSFVKPFASVSEQIAQGKTVFF----DTFAHANHDLRLKELITVN----AMQTSS 383 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 + + L ++ A + V++ T T++ A+ L LE+ G + ++ Sbjct: 384 WSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATVVPTGELTP--- 440 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 G VL +L G + P + I A + + R + Sbjct: 441 ---------GVVYVLA--GMLSSGFEYPAAKVALITHARIQNLSK----------RKVKR 479 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G+ I + S + + QG++K + I G ++ Sbjct: 480 RKGEEI-----RSLSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVL- 533 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ + D V + PK +++ L ++ + A++ D+L + Sbjct: 534 --------YVPVTQLDMVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADELIR 585 Query: 665 LRELF 669 L Sbjct: 586 LYAER 590 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 67/461 (14%), Positives = 130/461 (28%), Gaps = 41/461 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ E D L + P + + ++ Sbjct: 608 FEDHFEYEETEDQLRCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCVLDSKQC 667 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q Q L + + IE SRF + + + L + + Sbjct: 668 AILCPTTILAWQHYQTALARI--GNFPVNIELLSRFRTP----KEQKQVLQKLRTGQVDI 721 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + A + +G + +SATP Sbjct: 722 IIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHKERFKEMFR--------GVDVLTLSATP 773 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + + D V D V ++ I++ + +V Sbjct: 774 IPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDGQVYYIHNR 833 Query: 456 KRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + + H + E I + L E D+LV ++ G+D+ Sbjct: 834 VESIQSCAAQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVS 893 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I DAD G + L Q GR R+ + + T K + E +R Sbjct: 894 NCNTLIIEDADNMGLSQ----LYQLRGRVGRSKRRASAYF----TFRRGKVLTEIASKRL 945 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + G G + D+ G + + + V DM + L Sbjct: 946 SAIREFTKFG---SGFRIALRDLEIRGAGSILGERQHG-------HMEAVGYDMYLRLLS 995 Query: 634 QKIHELEG-----LMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + E +G + + +L E A D + L + Sbjct: 996 DAVSEKQGVKPPTKVEECLIDLPME-AHIPEDYIENLAQRL 1035 >UniRef50_C4LEI7 DEAD/DEAH box helicase domain protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEI7_TOLAT Length = 468 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 58/439 (13%), Positives = 109/439 (24%), Gaps = 39/439 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ ++ + + + + + + Sbjct: 21 YTEMTEVQAQTIPYALIG-RDLAVASKTGSGKTLAYLLPLMHRLL----TSRALSTRGPR 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + L T + G + + + P L Sbjct: 76 ALILAPTRELAKQVYAQLRFLVAGT-QVHCSLVLGGENFNDQIKALRKTPEILVATPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEA 384 ++L A L + + + M L + Sbjct: 135 LNHLTARSFLFDGVEILVLDEADRM-----------------LDLGFADALKAIHSAASH 177 Query: 385 LAPQTIYVSAT-PGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QT SAT SG + G ++ + + LL Sbjct: 178 RLRQTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALL 237 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + ++ +V T+ E L + E L D+ +R ++I G Sbjct: 238 KHLLS-QPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGH 296 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VL ++ GLD+ VSLV D K I IGR R N G A+ Sbjct: 297 AKVLFTTDVAARGLDLLHVSLVVNFDMPKL-----PEEYIHRIGRTGRAGNQGNAVSLIS 351 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + +RR G L +K G + R Sbjct: 352 PKDWVSFQGLMALQRREVTFTVIPGLEGRFKGVLAQKNTKFSGKGAHPLAEAKAAAQGKR 411 Query: 616 PIVEPDNVPMDMSPKALQQ 634 + + ++ + Sbjct: 412 SFNKNTATKGPVRKESKNR 430 >UniRef50_Q5CWJ1 Nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase (Fragment) n=4 Tax=Cryptosporidium RepID=Q5CWJ1_CRYPV Length = 738 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 70/499 (14%), Positives = 138/499 (27%), Gaps = 68/499 (13%) Query: 129 AMLERRDVVVVASVSAIYGLGDPD----LYLKMMLHLTVGMIIDQ----RAILRRLAELQ 180 A++ +D +VV +S + G + K L V ID+ L Sbjct: 25 ALMTLKDGIVVV-MSLLTGRTKKKESNMDHKKRKLESEVDGSIDRFPLSDESREILRSRG 83 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 R ++ + F E + Sbjct: 84 IERL-------------------------FPIQAQSF-ESIYGKKDVLGKAKTGTGKTLA 117 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 F + + + L L E + + + ++ Sbjct: 118 FVLPVIERLLKKGKFDPNKHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRY-KVCSVYG 176 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + P + D++ L V S +T+ + M Sbjct: 177 GSPEYPQIQEIKKGVDIVVGCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVD 236 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPT--- 416 + R + + Q + SAT + + D V Sbjct: 237 KIIDCVRKETGDGETHSR-----QNKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHI 291 Query: 417 -------------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + + + L I A IN + ++ T TK+ A ++ Sbjct: 292 SIHGEEEDEAAARSRIRHLAIQCAYPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIA 351 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E + + LH DI +R ++ + G + LV ++ GL + +V++V Sbjct: 352 MR-SEISKMCQVLHGDIQQNQREIALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQ--- 407 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETER---RREKQQKYN 579 R + I GR R G AI++ + +I + + +R +Y Sbjct: 408 --LAPPRDIDTYIHRSGRTGRAGKFGTAIMFCNMSDYPFLSSIEKASKISFQRIGVPQYE 465 Query: 580 EEHGITPQGLNKKVVDILA 598 E T + K +++ Sbjct: 466 EILQKTADSIGKDLLEKDI 484 >UniRef50_Q234J0 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q234J0_TETTH Length = 744 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 62/452 (13%), Positives = 128/452 (28%), Gaps = 39/452 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ F ++ F++ ++ L Sbjct: 92 FPIQEHCFQ-AIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIKKKQTPYMLVV 150 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L E L + G + P + D Sbjct: 151 VPTRELCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVVGTPGRIIDQY 210 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L+ + + M + + PQ Sbjct: 211 ERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKG------------EERPQN 258 Query: 390 IYVSATPGNYELEKSGGDVV-DQVVRPT-----GLLDPIIEV----RPVATQVDDLLSEI 439 + SAT ++ + + + D+V+ + P + + + I Sbjct: 259 LLFSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVI 318 Query: 440 RQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + RV++ TK A ++ + V+ LH DI +R + R G+F Sbjct: 319 LCYGGGAHSRVIIFCETKNEANEIMLK-ANIKQDVQVLHGDIPQKQREITFQGFREGKFK 377 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 LV N+ GLD+PEV L+ L+ + + I GR R G I + K Sbjct: 378 CLVATNVAARGLDIPEVDLIVQLEPP-----KELDAYIHRSGRTGRAGKKGVCITFYTKK 432 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 S+ + I + + ++ + + N +++++ + + Sbjct: 433 QQSLIERIEKKCHIKMQKVGAPQPADLIRASQNDIKKNLMSVNRTVLG--------IFKE 484 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 V D + +AL++ I + G + Q Sbjct: 485 VSVDLIQEFGPEEALERAIAFISGFTEKMKQR 516 >UniRef50_B7FSK1 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSK1_PHATR Length = 595 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 51/411 (12%), Positives = 101/411 (24%), Gaps = 30/411 (7%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENN---KLLEEQRLTQRTQFDLEMMNELGYC 303 + + L + L + ++ Sbjct: 4 RDVIGIAKTGSGKTLAYVLPLLRHMDAQPDLGPHESGPLGLILAPARELAYQIHVVCKNM 63 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI----GGMYRGDRARKE 359 + Y + G L +V I + G + R Sbjct: 64 AKPLGY--KSTAVYGGAGVAEQIADLKRGTHIVTATPGRLIDILTMQSGKILSLQRVTYV 121 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-- 417 + E + QT+ SAT + + V G Sbjct: 122 VMDEADRMYDMGFAPQISAILAAVRPDRQTVLFSATFPKAVESLARKSLQYPVEVMVGGR 181 Query: 418 -----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + E + LL + ++ ++V+V T+ A++L E L +G Sbjct: 182 SVASDSVTQYAERVEEDEKFLRLLQVLGEQVEGTKKVIVFVDTQVRADNLFEQLLRNGYS 241 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEF-DVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 LH + +R I D + + +VLV + GLD+ + V A Sbjct: 242 TLSLHGGKEQEDRDSTISDFKRKDGPNVLVATGVAGRGLDVGSCTCVINFSAPNH----- 296 Query: 532 ERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA-IGETERRREKQQKYNEEHGITPQGL 589 + + +GR R G A + + + + + E Sbjct: 297 LEAYVHQVGRTGRAGNRGVAYTFVSSTDEAKFAPNVVRAMSEAGQGDNISPELRQLSDEF 356 Query: 590 NKKVVDILALGQNIAKTKAK------GRGKSRPIVEPDNVPMDMSPKALQQ 634 KV A +++ + + + L Sbjct: 357 QAKVEKGEARYAGSGFKGKGYTYDSTELSEAQKMARLEKRQALLEAGLLDP 407 >UniRef50_Q5T1V6 Probable ATP-dependent RNA helicase DDX59 n=45 Tax=Euteleostomi RepID=DDX59_HUMAN Length = 619 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 67/430 (15%), Positives = 126/430 (29%), Gaps = 40/430 (9%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 +++++ + F + + + Sbjct: 221 SGYEVPTPIQMQMIPVGLLG-RDILASADTGSGKTAAFLLPVIMRALFESKT-------- 271 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L + + L ++ G + Y + P Sbjct: 272 PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPG 331 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + + + V + + M + + L E Sbjct: 332 RLLDIIKQSSVELCGVKIVVVDEADTMLK-----------------MGFQQQVLDILENI 374 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLL 436 QTI VSAT + + + + V TG + II + L Sbjct: 375 PNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLF 434 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLG 495 + + VLV K A+ L+E +++ G + +HS+ +ER I++ L G Sbjct: 435 EILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEG 494 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 +++V+V +L GLD+ V LV D S + IGR R NG AI + Sbjct: 495 DYEVVVSTGVLGRGLDLISVRLVVNFDMP-----SSMDEYVHQIGRVGRLGQNGTAITFI 549 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + I + + + +K QN T A Sbjct: 550 NNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDII 609 Query: 615 RPIVEPDNVP 624 R + ++ Sbjct: 610 RKHDKSNSQK 619 >UniRef50_A8NRL8 DEAD/DEAH box helicase family protein n=1 Tax=Brugia malayi RepID=A8NRL8_BRUMA Length = 830 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 100/364 (27%), Gaps = 32/364 (8%) Query: 211 ALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 R++ ++ F + + + + L Sbjct: 446 PRRIQAAVIPLIQNGWDIVGHAETGSGKTAAFILPIINYIM--NDGEKNDSRCAPIALIL 503 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + ++ T Y L D++ Sbjct: 504 APTRELVGQLYNQARKFANGTG-VTVAKAYGQYKLFENIMELERGCNILFATMGRLKDFV 562 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + S + + M D + + + + QT Sbjct: 563 INRKVKLHNISFFVLDEADRMLSQDSFQTDIINLVHRP------------DFPSVKDRQT 610 Query: 390 IYVSATPGNYELEKSGGDVV-DQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQ 441 + SAT + E + + + G ++ + D L+ + + Sbjct: 611 LLFSATITSEVKELAAKVLKENHAFVSNGKTISANPLVEQNFIEVTSENKFDKLIQLLEE 670 Query: 442 RAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 N R LV K+MA+ + L + + + D +R E + D R G Sbjct: 671 DREHNGDVARTLVFVQRKQMADVIALNLIQKNIQSSSISGDRMQKQREEALSDFRKGNIK 730 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ G+D+ ++ V D + + IGR R GKA + + Sbjct: 731 VLVATDVCARGIDVKDLQHVINYDMP-----SDRVTYVHRIGRTGRLHRGKATSFINLAD 785 Query: 559 PSMA 562 A Sbjct: 786 DDPA 789 >UniRef50_C9PMG6 ATP-dependent RNA helicase RhlB n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PMG6_9PAST Length = 449 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 57/393 (14%), Positives = 105/393 (26%), Gaps = 42/393 (10%) Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 R P ++ + + + F H +T Sbjct: 50 ERKGFEYCTPIQALSLPISL--------AGKDIAGQAQTGTGKTMAFLTATFHHLLTH-- 99 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + L L + + L++ T + G + + Sbjct: 100 -QSEKNTSQPRALILAPTRELAVQINNDAELLSKAT-NLKTGLAYGGDGYEKQLKTIEKG 157 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 + DY+ + + V + + Sbjct: 158 VDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADR-----------------MFDLGFIK 200 Query: 375 RPLKFEEFEA--LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-----IEVRP 427 A T+ SAT E + D+ D L E+ Sbjct: 201 DIRYLLRKCPAPEARLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFY 260 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + Q L ER +V TK E++ YL G RV L D+ +R+ Sbjct: 261 PSNQDKMALLLTLLEEEWPERCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLS 320 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 +++ G+ D+LV ++ GL + +V+ V D + IGR R Sbjct: 321 LLKQFTDGDLDILVATDVAARGLHISDVTHVFNYDLP-----DDCEDYVHRIGRTGRAGE 375 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 +G +I + + AI +Y+ Sbjct: 376 SGVSISFACEEYAMNLPAIENYIAHSIPVSQYD 408 >UniRef50_B7RTE5 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=B7RTE5_9GAMM Length = 440 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 64/478 (13%), Positives = 127/478 (26%), Gaps = 71/478 (14%) Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L L G+ + A+ Y + + + + PA + LRV Sbjct: 3 QQLELDRGLRLGLDALE-------YEKATEVQE-----------QVIPAALEGTDLRVSA 44 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 + + ++ + + L Sbjct: 45 E---------------TGSGKTVAYLLPTLQRILSAPIN----RKAGALAVVLVPTRELA 85 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + L Q+TQ + + G + + P L ++ + Sbjct: 86 RQVQKNCRDLMQKTQLGAQAI-TGGADFKYQRALLRKNPELIIATPGRLLEHCEKGSADL 144 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT- 395 + + + M + +K F Q I +SAT Sbjct: 145 GSLQTLILDEADRMLD-----------------MGFRDDVMKLASFCGAERQVIMLSATL 187 Query: 396 PGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + D + + D LL + R Sbjct: 188 KHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMD-KGGFTR 246 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 LV + A+ L L HG R LH ++ T ER ++ R + D++ ++ Sbjct: 247 ALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAAR 306 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 GLD+ ++ LV D ++G + GR R G AI + ++ +I Sbjct: 307 GLDVKDIDLVVNYDLPQKG-----DDYLHRTGRTGRAGATGLAISLVSGLEWNLMVSIQR 361 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 +++ G K + G ++K+ + Sbjct: 362 YLNLEFEKRSLPGLKARY-SGPKKTKGSGKSAGTKKKRSKSTADKSKTRARNQKSKGK 418 >UniRef50_D1H1T0 Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1H1T0_VITVI Length = 611 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 39/341 (11%), Positives = 92/341 (26%), Gaps = 33/341 (9%) Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAES--DDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y G +++ + ++ + + + + + Sbjct: 288 GYDVPKPIRHFQEANFPGYCLEVIAKLGFVEPTPIQAQGWPMAL-KGRDLIGIAETGSGK 346 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 + + H + L L E + T+ Sbjct: 347 TLAYLLPALVHVSAQPPLVRGE---GPIVLVLAPTRELAVQIQEEALKFGSFTK-IRSTC 402 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G G + P L D L A + +++ + + Sbjct: 403 IYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEAD--------- 453 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 L + + K QT+Y SAT + + + G Sbjct: 454 --------RMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIG 505 Query: 418 L--------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + ++EV + + L+ + + R+L+ TK+ + +T + Sbjct: 506 SQDLKANQSIQQVVEVVTETEKYNRLIR-LLKEVMDGSRILIFMETKKGCDQVTRQMRMD 564 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 G +H D + ER ++ + + G ++ ++ GL Sbjct: 565 GWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGL 605 >UniRef50_A0K1H7 DEAD/DEAH box helicase domain protein n=27 Tax=Actinobacteria (class) RepID=A0K1H7_ARTS2 Length = 635 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 52/471 (11%), Positives = 114/471 (24%), Gaps = 35/471 (7%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++V+ + + F I + + Sbjct: 23 TEPFPIQVKTLPDTL-AGRDVLGRGRTGSGKTIAFAIPLVARLAEREAKHFRKPGRPMG- 80 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + + + + ++ G + + P L Sbjct: 81 LVLAPTRELATQINATIEPMAKAMGLNTTVI-YGGISQARQEKALRAGVDIVIACPGRLE 139 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + L + + + M K + Sbjct: 140 DLIRQRILTLEAVEVTVLDEADHMADLG-----------------FLPVVKKLMDMTPSQ 182 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQVDDLLSEIRQR 442 Q + SAT N + + + + + V I + Sbjct: 183 GQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL 242 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A+ R ++ TK A L + L + G LH ++ R + + G+ VLV Sbjct: 243 ASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRVLVA 302 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+ + +V LV +D ++ + GR AR + G + S Sbjct: 303 TDVAARGVHVDDVELVIHVDPPT-----EHKAYLHRSGRTARAGSDGTVVTLTLPEQQSD 357 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + + ++ + + + + I + +G Sbjct: 358 VKKLMKAAGVEVNFERVTANSPLVAELVGEMADKIDPRTRAALLAAKSNQGGGTSTGANA 417 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 A R L + +A Sbjct: 418 ERKRARRTTQAAPTAG-----GRGGRGGRGRVGAEAPRTDLPRSERRAVAY 463 >UniRef50_B0A8H2 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A8H2_9CLOT Length = 480 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 71/428 (16%), Positives = 126/428 (29%), Gaps = 23/428 (5%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ + E L D L +I S + I + + A ++ Sbjct: 7 FNLDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKS-KTGTGKSAAFAIPICNKIK 65 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP-PTLFDYLPADGLL 335 + + + T+ + E G G+ P L + Sbjct: 66 KLENKLKVLVIVPTRELALQVKEEIEKIGRLKMI--KCSVILGKEPLKNQILELKQGTNV 123 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V I I D + E + + + SA Sbjct: 124 IVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAFFSA 183 Query: 395 TPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDLLSEIRQ--RAAINER 448 T N E G + D + I E + + ++ E Sbjct: 184 TVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVLYKFKPET 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ T TK+ AE L E ++ G V +H DI R II + EF++L+ +++ Sbjct: 244 TIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISSDIISR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+ + +VSLV D + IGR R GKAI + I Sbjct: 304 GIHIDDVSLVINYDIP-----SDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENIEV 358 Query: 568 TERRREKQQ------KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + + K E+ T + L K + Q+ K + S + Sbjct: 359 YTKNKIEPIGIEYCEKDKIEYQKTIKELLNKYALVENQEQDEFKGEVVKIHISIGKKKKI 418 Query: 622 NVPMDMSP 629 + + Sbjct: 419 RIGDIVGA 426 >UniRef50_B0ET33 ATP-dependent rRNA helicase RRP3, putative n=2 Tax=Entamoeba dispar SAW760 RepID=B0ET33_ENTDI Length = 406 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 53/392 (13%), Positives = 108/392 (27%), Gaps = 44/392 (11%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 F + H + V+ + L + + + + Sbjct: 44 GKTASFLLPMIQHLL-----NVKEKNRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMS 98 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG---LLVVDESHVTIPQIGGMYR 352 + G ++ P + ++ + + I + + Sbjct: 99 CLLVGGMDVMKQSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLE 158 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 D N E T+ SAT + + V Sbjct: 159 MD-----------------FANEIDYLIEKLPSQRTTMLFSATMSTKVEKLQRASLTHPV 201 Query: 413 VR--------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 L P + LLS +++ + +++ T+ L Sbjct: 202 KIKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSILKE--TEGKSIIIFTMKCSGCTKLVM 259 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + G LH + +R+ + + G+ +LV ++ GLD+P V +V D Sbjct: 260 MLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILVATDVASRGLDIPNVDIVINYDCP 319 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + I +GR AR G AI + + + + I ++ + K N+ Sbjct: 320 L-----EPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRIETMIEKKLNEYKANDAMR 374 Query: 584 ITPQGLNKKVVDIL---ALGQNIAKTKAKGRG 612 I Q L ++ GQ + Sbjct: 375 IVSQQLKEEAQKKKEKLQKGQKKLNEEEDNDE 406 >UniRef50_A6DL95 Probable ATP-dependent RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DL95_9BACT Length = 482 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 136/441 (30%), Gaps = 28/441 (6%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + A L + + + + +++ G + Sbjct: 43 QDALVRAKTGTGKTAAFAIPALQHLRAEVQHPQVLILTPGRELCKQISQEFIKLGKGLEN 102 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 ++ G + L ++ I + + + E Sbjct: 103 FRVAEVTGGGKLSGVKKSL-HGAQVISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFD 161 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEV 425 + + QT+ SAT + S + V+ G + + E Sbjct: 162 MGFREAVTSILKDLPKSVQTVLCSATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEW 221 Query: 426 -RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V + L+E + N++V+V K +++ E L++ G V LHS ++ Sbjct: 222 AVSVYPENHLKLTEKLLKKHKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNV 281 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + ++ R + +LV ++ G+D+P + LV D + GR AR Sbjct: 282 RNQALKLFRDKQVRILVATDVASRGIDIPGLPLVVNYDLP-----YDFPDYVHRAGRTAR 336 Query: 545 NVN-GKAILYGDKITPSMAKAIGETERRREKQQ---KYNEEHGITPQGLNKKVVDILALG 600 G I + + K+ E R+ + + +E ++ + L KK D + Sbjct: 337 AGKSGLVISFYNGRKEKTIKSFEERTGRQMLRVSFNQIMDEKQVSQKPLAKKKQDSVRKK 396 Query: 601 QNIA--------KTKAKGRGKSRPIVEPDN----VPMDMSPKALQQKIHELEGLMMQHAQ 648 NI K +G D+ + +K L L + ++ Sbjct: 397 ANIRDCSRIIVYGGKKQGLNNGLLKKILAKNCGLDDSDIGYIEVNEKHTLLGVLREKSSR 456 Query: 649 NLEFEEAAQIRDQLHQLRELF 669 L + +I + +L Sbjct: 457 VLTTLQKTKISGHILKLELRR 477 >UniRef50_D0N6Y7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6Y7_PHYIN Length = 847 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 51/442 (11%), Positives = 124/442 (28%), Gaps = 28/442 (6%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + + V + + + L+ + Sbjct: 59 PTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMVEKL-KEHSTKIGVRAVVLSPTRE 117 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 ++ + S + L GE F+ + ++ ++V + + + Sbjct: 118 LAVQTLRFAKQLSKFTSLKMAL--IVGGEGMDQQFEAIASNPDVLVATPGRLMHLLQEIP 175 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + E + + + + QT+ SAT ++ + + Sbjct: 176 DFNLKAVEYVVFDEADRIFEMGFAEQLQEILKNMPTSRQTLLFSATLPKALVQFARAGLS 235 Query: 410 DQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D + + + I E + L +R+ ++ +V T+ E L Sbjct: 236 DPELIRLDVENKISENLKMAFFTVRSLDKPALFLYMVREFLPKGDQTIVFAATRHHVEFL 295 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L + + D+D R + R + ++L+ ++ G+D+P ++ V Sbjct: 296 HALLAANHIEASCAYGDMDQASRKINLGKFRAKKTNLLIVTDVAARGIDIPLLNNVLNYS 355 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + + + +GRAAR G A + D + RR + E Sbjct: 356 FP-----PTAKLFVHRVGRAARAGRSGTAFSFVDPDETPFMVDLHLYIGRRLEDSSPEES 410 Query: 582 HGITPQGLNKKVV----------DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 G P L+ V +++ + + + P+V+ + + Sbjct: 411 AGTKPYSLSTMRVEDVHYGAFPNELIDQENEALQETVRSHPQVSPLVKVCDNAYKAYART 470 Query: 632 LQQKIHELEGLMMQHAQNLEFE 653 + A Sbjct: 471 RADPSKNSIRRGKELAVKKVHP 492 >UniRef50_D1XG89 DEAD/DEAH box helicase domain protein n=1 Tax=Streptomyces sp. ACTE RepID=D1XG89_9ACTO Length = 545 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 57/399 (14%), Positives = 104/399 (26%), Gaps = 21/399 (5%) Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R Q G F + + PA A +++ ++ L+ + Sbjct: 37 RRKSVPAQGGEFALPETLTPALPAADTFDA--LDMPGALLKTLAAQGVTEPFPIQGATLP 94 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + L AR L T+ + + + Sbjct: 95 NSLAGRDILGRGRTGSGKTLAFGLALLARTAGRRAQPHAPLAMVLVP-TRELAQQVTDAL 153 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKET 360 + ++ G L ++V I R D Sbjct: 154 TPYATSV-NLRVATVVGGMSISRQAGSLRRGAEVLVATPGRLKDLIERGDCRLDEVTVTV 212 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL- 419 L E + + + Q + SAT + D VV Sbjct: 213 LDEADQMADMGFMPQVVALLKQVEPDGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSA 272 Query: 420 ------DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + + T + + I AA RV++ TKR A+ + L G R Sbjct: 273 GAVTTMEHHVLHVADETDKKAVATRI---AAREGRVIMFVDTKRAADRFAKRLLASGVRA 329 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 LH +R + + G+ LV N+ G+ + ++ LV +D + Sbjct: 330 AALHGGRSQPQRNRTLDQFKNGQVTALVATNVAARGIHVDDLDLVVNVDPPT-----DHK 384 Query: 534 SLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERR 571 + GR AR +G + + Sbjct: 385 DYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMADAGI 423 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 228 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 78/528 (14%), Positives = 153/528 (28%), Gaps = 47/528 (8%) Query: 132 ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 ++ +V+ ++ P LY+ + V + +L + R +A + Sbjct: 534 SGQECLVIEYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKARPQLNTIGGTRWAKAKAQA 593 Query: 192 TFRVRGEVIDIFPAESDD-----------IALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 VR ++ ++ + E F+ D + + Sbjct: 594 ERAVRDVASELLAIQAARESQPGYSFKADTPWQRE-FESAFLYEETRDQMRAINETKGDM 652 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 P + + I+ A + + Q E + + Sbjct: 653 ERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTFKERVADY 712 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 +E SRF S + + LPA + +V +H I + Sbjct: 713 --PMRVELLSRFRSP----KNRKRVISELPAGAVDIVIGTHRLIQSDINFKDLGLVIIDE 766 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 +G + + +SATP L + D T D Sbjct: 767 EQRFGVLHKEKF--------KQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQD 818 Query: 421 PIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--H 477 + VA + L+ I++ +V + + + L R + H Sbjct: 819 RLPVETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGH 878 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + + E++ GE DVL+ ++ GLD+P + + I AD+ G L Q Sbjct: 879 GQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLS----DLYQ 934 Query: 538 TIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 GR R + + R+R K G G + D+ Sbjct: 935 LRGRVGRYKHQAYAYLLLPRHAGLLAD----ARKRISALKQYSTLG---SGFKIAMRDLE 987 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G + + V D+ + L+Q + L+G ++ Sbjct: 988 IRGAGNMLGPEQSG-------QITAVGFDLYCQLLKQSVAALKGEKVK 1028 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 110/305 (36%), Gaps = 18/305 (5%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPN 66 S + A++ L LE+G +L G++ S + F A + L P ++++ + Sbjct: 3 TSKLFAKISETPAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDS 61 Query: 67 KTLAAQLYGEMKEFF-------PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ + + P+ + + + + Sbjct: 62 LKTQESFQQDVETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV 121 Query: 120 EQMRLSATKAMLERRDVV------VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAI 172 RL A+ + ++A+V+A+ + + L G ++ + Sbjct: 122 ISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDL 181 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L E Y Q Q+G +RG ++D++P + +R+E F +E+E L FDP+T Sbjct: 182 IEWLEEQGYEPEAQVTQKGEIALRGGILDVYPM-TSPWPVRLEFFGDELESLRYFDPITQ 240 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 I T+ P + ++ + + L L E +R+ + T+ Sbjct: 241 ISREQIATVTLPPGGEFGILKQLAARDQQASLATLLDYL-PTGTLFILSEPERIEEHTEQ 299 Query: 293 DLEMM 297 + Sbjct: 300 YSTQV 304 Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 47/396 (11%), Positives = 99/396 (25%), Gaps = 43/396 (10%) Query: 294 LEMMNELGYCSGIENYSRF-LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-- 350 E + + G E L+ R TL DYLP L ++ E Sbjct: 243 REQIATVTLPPGGEFGILKQLAARDQQASLATLLDYLPTGTLFILSEPERIEEHTEQYST 302 Query: 351 ----YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK--- 403 E + E+ + S E Sbjct: 303 QVPNEDPFHIPWSDFQELLSEKGMKSLQLSEIVMDGESEGMDVLSESEAVAEDERPFGES 362 Query: 404 SGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + + L E + Q + +++ + + V + + Sbjct: 363 TENSLPFSSLEAFRPLGARAPEPQIAEAQRREFFAQLHRWSRQGYDVHLFCNNDGERQRF 422 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E +++G D G L L G E +V + D Sbjct: 423 QEVWKDYGFG-----------------EDF--GLKMHL---GALGRGFLNEEAKVVVVTD 460 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 A+ G + +R A + I + + + R + + Sbjct: 461 AEIFGRYKVQRPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQHGIGRYQGLKVLPVTL 520 Query: 583 G-------ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 G TP ++ + I + + P+ E V + + + Sbjct: 521 GRKGVDPNATPADSGQECLVIEYAASDP---QQPAPKLYVPVTEAHLVSKYVGAGKARPQ 577 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 ++ + G A+ + +L ++ + Sbjct: 578 LNTIGGTRWAKAKAQAERAVRDVASELLAIQAARES 613 >UniRef50_Q7KK34 BcDNA.GM05306 (Fragment) n=15 Tax=Fungi/Metazoa group RepID=Q7KK34_DROME Length = 641 Score = 228 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 57/457 (12%), Positives = 121/457 (26%), Gaps = 45/457 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + + I Sbjct: 177 YIYPTPIQASTIPVALLG-RDICGCAATGTGKTAAYMLPTLERLLYRPLNNK----AITR 231 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L Q T + + G Sbjct: 232 VLVLVPTRELGAQVYQVTKQLCQFT-------------------TIDVGLAIGGLDVKAQ 272 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + +V+ I I + D L E L + + Sbjct: 273 EAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSC 332 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDD 434 QT+ SAT + + + + I + Sbjct: 333 CKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREP 392 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +L+ + ++ +V TK+ A L L G R LH ++ +R+E ++ + Sbjct: 393 ILASLI-CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + DVL+ ++ GLD+ V V + I +GR AR G ++ Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPI-----TTEHYIHRVGRTARAGRAGISVSL 506 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + K I + K + E + K+ + QNI + R Sbjct: 507 AGEKERKIVKDIIKNAESTIKNRIIPPE---IIEKYRNKLTSLEPEIQNILDEEQAERQL 563 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + + + +++ + ++ Sbjct: 564 AKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKDR 600 >UniRef50_UPI0001C36A36 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A36 Length = 483 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 52/375 (13%), Positives = 107/375 (28%), Gaps = 14/375 (3%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E + D L Q + I R I + + + L Sbjct: 18 EIIHALDLLGYQEPTEIQREVIPAVLE-GRNVAARSRTGTGKTAAFGIPLCEKIVWEENL 76 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + + ++ ++ + G + G P + +VV Sbjct: 77 PQALVLEPSRELAVQVSNELFHIGRRKR-LKVPAVFGGFPIDKQMRTIKQKSHIVVGTPG 135 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + I + R + E L + + + SAT Sbjct: 136 RVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSATLDEKV 195 Query: 401 LEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLT 455 + D V+ +P I ++ +++ E ++ T Sbjct: 196 RLLVDEYMADAVMIAPEPDAEEEPAISQVVYRADPEEKYDLLKRTLILENPESCMIFCGT 255 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + M L + L+ +H +++ ER++ + R G F L+ ++ G+D ++ Sbjct: 256 REMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVAARGIDFDKI 315 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 LV D + + IGR RN NG+A+ + M + R Sbjct: 316 DLVVNYDFP-----GGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRELS 370 Query: 575 QQKYNEEHGITPQGL 589 E + Sbjct: 371 VTTCPEPDEEATKAF 385 >UniRef50_B6AIE5 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIE5_9CRYT Length = 498 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 55/407 (13%), Positives = 116/407 (28%), Gaps = 36/407 (8%) Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 + G + I ++ ++ + S + + + Sbjct: 107 IMKCGVPSWVIDNIRDILKYKKPTPVQAQVIP-LILSGSDILAQSPTGSGKTLSYLLP-- 163 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + + + L L + E + L + Sbjct: 164 ---ILGKLTNEKT---YCKSLILSPTRELAQQIVREVKVLLDTRAKKY-RCRYICGKVKK 216 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 E SR P + + + + + S + + ++ + + + + Sbjct: 217 EQESRTKRLDIAVSTPFRFAEICKSGIMNLKECSFIVLDEVDKLLDMGFSPQIDEIIAHS 276 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPI 422 + S Q + SAT N + + + + G I Sbjct: 277 NVIS-------------NGKVQVVAFSATLPNNVKDLAESIMKYPIEVTVGHRLAASKTI 323 Query: 423 IEVRPVATQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + T+ L RQ VL+ T +K A+ L + V +HSD Sbjct: 324 KQELICVTKESGKLESFRQLIKQGRINLPVLLFTNSKENAQKLFSKIVFDNLLVDMIHSD 383 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + +R I++ R G+ VL+ +L+ G+D V+ V D ++ I I Sbjct: 384 MAKTKRDNIVKKFRTGQIWVLICTDLIARGVDFKNVATVINYDFP-----QTSTIYIHRI 438 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 GR+ R G A+ + K I + + + Sbjct: 439 GRSGRAGRLGHALTFFTLNDLPKLKYIAKVMKSSGIEVPNWILKNKI 485 >UniRef50_D2UZP5 Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2UZP5_NAEGR Length = 483 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 114/404 (28%), Gaps = 54/404 (13%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK-----THYVTPRERIVQAMEEI 263 ++++ +E + F++ ++ Sbjct: 59 PTPIQMQGLPCLLEG-RDVIGIAFTGSGKTLVFSLPIIMYSYLNEHLYATRPKSIRRNNG 117 Query: 264 KEELAARRKVLLENN-----------KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 L L +E++ +Q + ++ + I N S Sbjct: 118 PLGLILCPNRELAKQTFEFIEYFFNGINEQEKKRSQTFKLNVSLCMGGIKEERIFNQSNS 177 Query: 313 L------------SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 P L L + + + D +V + + + Sbjct: 178 NSRYYSSNSSGGGYIHIVVATPGRLIQMLNENKIQLNDCKYVCMDEADRLIDLGFEEDIK 237 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + L Q ++ SAT + + ++ G Sbjct: 238 TIFQHLNLN--------------NNHIQKVFFSATMPEKIQNLAMNTLNQPIIVNVGRAG 283 Query: 421 PI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + I+ + D ++ ++ VL+ + K + + EYL G + Sbjct: 284 AVNLDVIQEVEYVQEEDKIVYLLQALQKTPPPVLIFSQNKSEVDTICEYLLLKGVEAVSI 343 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 HS D ER I + G+ VLV +++ +G+D P V V D R + + Sbjct: 344 HSSKDQSEREYAIDSFKQGKKHVLVATDIVSKGIDFPNVKHVINFDMP-----REIENYV 398 Query: 537 QTIGRAARNVN-GKAILYGDKIT-PSMAKAIGETERRREKQQKY 578 IGR RN G A + +K + + + ++ Sbjct: 399 HRIGRTGRNGKTGLATTFINKNQSEQILLDLKYLLKEANQRIPP 442 >UniRef50_P32892 ATP-dependent RNA helicase DRS1 n=23 Tax=Saccharomycetales RepID=DRS1_YEAST Length = 752 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 55/483 (11%), Positives = 129/483 (26%), Gaps = 54/483 (11%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ L+ + + + + + R Sbjct: 236 LSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL- 294 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ + ++G G L + Sbjct: 295 YKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRP 354 Query: 334 LLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +V+ I I + D + E L + + Q + Sbjct: 355 DIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLL 414 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP---------VATQVDDLLSEIRQR 442 SAT + + V + L + IR+ Sbjct: 415 FSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKL 474 Query: 443 AAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++ ++V K A L + G V LH + +R++ + + E VL+ Sbjct: 475 DPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLI 534 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG--DKIT 558 +L GLD+P++ +V D +S + +GR AR G+++ + Sbjct: 535 CTDLASRGLDIPKIEVVINYDMP-----KSYEIYLHRVGRTARAGREGRSVTFVGESSQD 589 Query: 559 PSMAKAIGETERRREK----------------------------QQKYNEEHGITPQGLN 590 S+ +A ++ + + + + Sbjct: 590 RSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEIL 649 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPI----VEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + + + G+N+ K K + + + R + + +K+ + + Sbjct: 650 RAEMQLR-KGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREE 708 Query: 647 AQN 649 A+ Sbjct: 709 AKA 711 >UniRef50_Q7JQN4 Rs1 n=15 Tax=Diptera RepID=Q7JQN4_DROME Length = 782 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 57/457 (12%), Positives = 121/457 (26%), Gaps = 45/457 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + + I Sbjct: 177 YIYPTPIQASTIPVALLG-RDICGCAATGTGKTAAYMLPTLERLLYRPLNNK----AITR 231 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L Q T + + G Sbjct: 232 VLVLVPTRELGAQVYQVTKQLCQFT-------------------TIDVGLAIGGLDVKAQ 272 Query: 326 FDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + +V+ I I + D L E L + + Sbjct: 273 EAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSC 332 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDD 434 QT+ SAT + + + + I + Sbjct: 333 CKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREP 392 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +L+ + ++ +V TK+ A L L G R LH ++ +R+E ++ + Sbjct: 393 ILASLI-CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKE 451 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 + DVL+ ++ GLD+ V V + I +GR AR G ++ Sbjct: 452 EQIDVLIATDVAARGLDIVGVKTVINFVMPI-----TTEHYIHRVGRTARAGRAGISVSL 506 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + K I + K + E + K+ + QNI + R Sbjct: 507 AGEKERKIVKDIIKNAESTIKNRIIPPE---IIEKYRNKLTSLEPEIQNILDEEQAERQL 563 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + + + +++ + ++ Sbjct: 564 AKTEQQLSKTERKLLGQTNERRGWFQTKQQREAEKDR 600 >UniRef50_Q6CKI1 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 n=1 Tax=Kluyveromyces lactis RepID=PRP5_KLULA Length = 812 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 66/527 (12%), Positives = 150/527 (28%), Gaps = 45/527 (8%) Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP--DLYLKMMLHLTVGMII 167 +++ R+ + E D +S I P L I Sbjct: 134 YIHKLIDKDSNTNRVRLIDNISEDEDANDSSSEKTISQEEAPVDSEILFKKKGRKKIKAI 193 Query: 168 DQRAILR--RLAELQYARNDQA--FQRGTFRVRGEVIDIFPAESDDIALRVELFD----- 218 D +L L + Y + +D D V + Sbjct: 194 DYSKVLNLITLNKCLYREPNDLGLMSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLS 253 Query: 219 ----EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--K 272 + + F LT IP I + + L + + Sbjct: 254 SEIMDLISNELQFVTLTPIQCQAIPA--IMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQ 311 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L ++ + T+ + E + + G + L Sbjct: 312 PPLAPDETGPIGLILTPTRELAVQIQEEALKFCKGSGISSICC-VGGSELKQQINELKRG 370 Query: 333 GLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 ++V I + G + R + E + + Q Sbjct: 371 VDIIVATPGRFIDLMTLNSGHLLSPTRISFVVMDEADRLFDLGFGPQVNQIMGCIRPDKQ 430 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVAT-QVDDLLSEIR 440 + SAT + + + + + + +++ + + LL + Sbjct: 431 CVLFSATFPSKLKHFASRTLKNPIQITINSKSLINENIQQRVQIFDEEHVKFEFLLKRLS 490 Query: 441 Q----RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +E+ ++ ++++ + L + L +G +H+ + ER+ ++ + + Sbjct: 491 DRLALHRGEDEKTIIFVGSQQLCDLLYDELLLNGITTFPIHAGKPSAERLRNLQKFKETD 550 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGD 555 +L+ +L GL++PEVSLV I +A ++ + T+GR R NG A+ + Sbjct: 551 NGILICTEVLSRGLNVPEVSLVIIYNA-----AKTIAQYVHTVGRTGRGTNNGVALSFVM 605 Query: 556 KITPSMAKAIGETERRRE---KQQKYNEEHGITPQGLNKKVVDILAL 599 + A + + + E ++ + + Sbjct: 606 VDELASAYILVKCMKENELSSVPMVVYQKLKEMNDEFSSGLKTGKYR 652 >UniRef50_B6AAR3 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AAR3_9CRYT Length = 942 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 47/475 (9%), Positives = 120/475 (25%), Gaps = 59/475 (12%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + ++I FP + I + + + + + H + Sbjct: 223 YLQSKDIIKPFPIQMQSIPI--------LMSGKDMIGIAETGSGKTLAYVLPLIRHVIIQ 274 Query: 253 R------------ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + + L L + + L+ + + ++ Sbjct: 275 KSNNYPFNKMERSNTTINTNIHYVTALIIVPTRELALQVYKQTKILSNIVKLNSTVIC-G 333 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+ + P D + + V + Sbjct: 334 GFSISNQLNKLRSGCDIVVCTPGRFIDIISLNYKRVSVFQY--------------ISYIV 379 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--- 417 + E L + Q SAT + + + + G Sbjct: 380 IDEGDRLLDMGFAPQLTNILSIIRPDRQCCIFSATFPPVVEQLVNNLLTNPIQVIVGQKG 439 Query: 418 ----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 + IE+ + L ++ + +++ + ++L L +G + Sbjct: 440 QLTSNVKQHIELWKDDQEKFYRLLQLLGEWSEFGLIVIFCNRQVEVDELYAQLLPYGYKC 499 Query: 474 RYLHSDIDTVERMEIIRDL-RLGEF------DVLVGINLLREGLDMPEVSLVAILDADKE 526 LHS D +R + + + ++L+ ++ GL + + +V Sbjct: 500 FTLHSGQDNNDRHSNLMQFSKSNKVEISSGNNILIATSIFSRGLHIDNILVVINY----- 554 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 G I +GR R G + S + E ++ + ++ I Sbjct: 555 GPPHHIEDYIHRVGRTGRAGKFGTSFTLLLSSEISQCFDLIELTQKYDNDIVIIDQKVID 614 Query: 586 PQGLNK----KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 K + K+ GK + + + + ++ + Sbjct: 615 SYNNEKIKFCFERSEQTRNKRNRKSNFGFGGKGYKFSKDEKTSLQLLKDDTKKIL 669 >UniRef50_A7RHS2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RHS2_NEMVE Length = 620 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 45/426 (10%), Positives = 116/426 (27%), Gaps = 35/426 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY--VTPRERIVQAMEEI 263 +++++ + F + + +T + Sbjct: 216 YHSPTPIQMQVLP-VLLSGRDVMVCASTGSGKTASFLLPMISRIHHITGKLLPSSPEVRF 274 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L + + + G + + + + P Sbjct: 275 IYGLILAPTRELCMQIEKQTKEFVHGMTNMRTALLIGGVPVPPQLHRLKMGVQVIVATPG 334 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + + + + + + ++ M + + + + E Sbjct: 335 RMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQ-----------------QVQQILERL 377 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLL 436 + QT+ SAT + + V G + +I ++ L Sbjct: 378 SNRRQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKSKKKQLF 437 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLG 495 S ++ N +V +K A+ L E + + + +H D ER +I++D G Sbjct: 438 SILKDSRHFNPPAVVFVESKLGADMLAEAVSKVCHIKCLSMHGDKPQAERAQILQDFLAG 497 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 E ++V +L G+D+ + V D + + IGRA R G +I + Sbjct: 498 ECPLVVSTAVLGRGVDLLNIRQVINFDMP-----PTYEEYVHQIGRAGRLGATGWSISFI 552 Query: 555 DKITPSMAKAIGETERRREKQQK-YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + + + + + ++ ++ Sbjct: 553 NNASKGLFLQLINKLQPMGVKLPDELTRSAHVLDERRRASNSRKRAEKDEIVNQSNLMDL 612 Query: 614 SRPIVE 619 + Sbjct: 613 IVKRKK 618 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 61/440 (13%), Positives = 132/440 (30%), Gaps = 38/440 (8%) Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + P + + ++ A + Q ++ Sbjct: 618 KKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHYMTFVQR 677 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 M + + + + + L + ++ +H + Sbjct: 678 MKDFPITIEVLSRLKSE------SQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGLL 731 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + + + + ++ATP L + + D + Sbjct: 732 IIDEE--------HKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIED 783 Query: 417 GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GER 472 D V + ++ I + + +V + E++ L+ + Sbjct: 784 PPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIK 843 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + Y H +D + E++ D G++DVLV ++ G+DMP V+ + + DAD+ G + Sbjct: 844 IAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ-- 901 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 L Q GR R+ + + K + E +R K E G G Sbjct: 902 --LYQLRGRVGRSNKLAYAYFTFRKD----KVLSEEAAKRLSAIKEFTELG---SGFKIA 952 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNL 650 + D+ G K + + V DM + L ++I L+G + + Sbjct: 953 MRDLEIRGAGSIVGKLQHG-------HINAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQI 1005 Query: 651 EFEEAAQIRDQLHQLRELFI 670 + A I + + I Sbjct: 1006 DIRVNAYISSEYIDDDKERI 1025 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 81/662 (12%), Positives = 197/662 (29%), Gaps = 87/662 (13%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 ++ + ++E+ + + + GK + + + + + K Sbjct: 2 LKIFEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQK---- 57 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 + E+ + + + + + + + ++ E R + Sbjct: 58 ------------SKSEWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIF 105 Query: 132 ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 E V++ S + + L L + L L Y R ++G Sbjct: 106 EEGFDVLILSPQNLLEKYS--DFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKG 163 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F +G ++DI+P S +R+E F + ++ + FD T + + IY + Sbjct: 164 QFSQKGGIVDIYPIFSK-YPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDL 222 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + K ++ + K L+ + + E ++ G E Sbjct: 223 SIDFSDG------------IKKIVADFKKLQNKLKGDARKNLEESFKDVID--GAELKID 268 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS- 370 L + ++FD + D +++DE + + L+E G+ L Sbjct: 269 RLYPYY-YQNFRSIFD-IFGDCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLEKGYVLTKM 326 Query: 371 -ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + E + + + A V+ + + E+ Sbjct: 327 AGCYFKVYDILEKLSSSI-ILQTFAQSIKEIQ-----------VKDIFSFNNLREIPSYN 374 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q + L+ +I+ + + V ++ EDL LE+ +D +R + Sbjct: 375 GQKELLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEFNK--ADEVLTDRQGVY 432 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAI--LDADKEGFLRSERSLIQTIGRAARNVN 547 R + +G+++ + V + + +K+ ++ Sbjct: 433 LLPRS-----------VEKGIEIQNLKWVCLSFFNVEKKKGKDVKKR-----------PK 470 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K + K R K+ IT +G+ K+ + + + Sbjct: 471 SKKETFYTIED---LKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYL--- 524 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 P D + + + K+ +L L Q + + + + +L Sbjct: 525 ------YVPTTNLDVIEKYIGTDDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDIVELYA 578 Query: 668 LF 669 Sbjct: 579 KR 580 >UniRef50_P21507 ATP-dependent RNA helicase srmB n=192 Tax=Gammaproteobacteria RepID=SRMB_ECOLI Length = 444 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 63/421 (14%), Positives = 113/421 (26%), Gaps = 37/421 (8%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + + H + + L L Sbjct: 41 GRDVLGSAPTGTGKTAAYLLPALQHLL----DFPRKKSGPPRILILTPTRELAMQVSDHA 96 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + L + T D+ + G + L Y+ + + Sbjct: 97 RELAKHTHLDIATI-TGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLI 155 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-PGNYELE 402 + + M QT+ SAT G+ + Sbjct: 156 LDEADRMLD-----------------MGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQD 198 Query: 403 KSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + D V + LL + + R +V Sbjct: 199 FAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK-QPEATRSIVFVRK 257 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + +L +L E G YL ++ +R E I+ L G +VLV ++ G+D+P+V Sbjct: 258 RERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDV 317 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREK 574 S V D + G + + IGR AR G AI + + +G K Sbjct: 318 SHVFNFDMPRSG-----DTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 372 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + +E T K+ K K + K +P V+ + K + Sbjct: 373 ARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKP 432 Query: 635 K 635 Sbjct: 433 S 433 >UniRef50_C5KDQ4 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KDQ4_9ALVE Length = 755 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 102/397 (25%), Gaps = 46/397 (11%) Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 + I ++ +++ ++ + + + H Sbjct: 290 LHISYPNGSPTPIQAQVWPVALQG-RDIVAIAETGSGKTLAYLLPAIVHLNNQPP---VT 345 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + L L + E + + + Sbjct: 346 IPGEPIVLVLAPTRELASQIAEEVVVVVVVVALRVTYLFGGVKKREQVEQMNRDVPDMIV 405 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D + G+ + + + + M + Sbjct: 406 ATPGRLLDMMSDGGVCLRRVTFFVVDEADRMILLG-----------------FWKQVKTI 448 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + Q I +SAT + S D V G + I+ + Sbjct: 449 SQQIRPDRQCIMLSATWPEEVRDVSLKLCREDPVHINVGDISDNIDDSDPYNREK----- 503 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR----- 493 + A ++VL+ T K+ ++L L + G +HS + ER I + Sbjct: 504 -LRTARSVKQVLIFTSGKKSVDNLVGCLRQIGWPAVGIHSGKEQAEREWIFDQFKGRLNT 562 Query: 494 -------LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 E +LV +++ G+D V V D S I IGR R Sbjct: 563 EDHSRASRAEAVILVATDIMARGMDFVSVRYVINFDFP-----ESCEDYIHRIGRTGRAG 617 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + G A Y + +A+ + R Sbjct: 618 HQGNAYSYFSENDFWVAREMIPLLRESNVDIPPMMLK 654 >UniRef50_Q8IJ90 DEAD/DEAH box helicase, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IJ90_PLAF7 Length = 917 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 47/373 (12%), Positives = 101/373 (27%), Gaps = 29/373 (7%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHY-----VTPRERIVQAMEEIKEELAARRKVLL 275 + + + F ++ + L L Sbjct: 560 ILKKINLLACSQTGSGKTFSFLCPIISNLKKENEILRPHFPGSYACISPLCLILCPTREL 619 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E LT+ G L D L + + Sbjct: 620 VIQIQNEVNSLTKNMSIVCMSFYGGETMKDQVAQINEKQGDIIICTAGRLLDLLNSCKVS 679 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + ++ + M ++ + + L QTI+ +AT Sbjct: 680 LSFIKYLIFDEADEMISLGLKKQMDEIIFQKDLSP-------------KDTRQTIFFTAT 726 Query: 396 PGNYELEKSGGDVVDQ-VVRPTG----LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + E + V + I E+ + ++ + + + Sbjct: 727 FSDKLKEHIEKYMSTPYVYLNIKQKRETKNRIREIVKYVPAKSKFIELLKDIKILKGQAI 786 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + + ++ +L+ G V YLH + + R + + R +L+ ++ GL Sbjct: 787 IFVELRHSINNVFNFLKTKGYNVDYLHGKMSQIRRQSVFENFRKKSVQILIATSIAARGL 846 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D P++ LV D + IGR R G AI Y + ++ + + Sbjct: 847 DFPDLELVINYDLP-----SEFEQYMHRIGRTGRIGKGGMAINYFNSSNKNIIDKLIDHL 901 Query: 570 RRREKQQKYNEEH 582 R+ ++ H Sbjct: 902 RKYDQPVPNWLLH 914 >UniRef50_D1NAH8 DEAD/DEAH box helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAH8_9BACT Length = 542 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 56/404 (13%), Positives = 114/404 (28%), Gaps = 40/404 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ +E F + T + + L Sbjct: 149 TPIQALTLPALLEG-RDLAGKAQTGTGKTAAFLLAVFTRLLNHPLEERKP--GCPRALVL 205 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + L T ++ G + S P + DY Sbjct: 206 APTRELAMQIQKDAEVLEIFTG-LTSVVVFGGMDHEKQRRSLEQPVDLVIGTPGRIIDYS 264 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA--P 387 L + + I + M + Sbjct: 265 RGGSLKLSKVEVLVIDEADRMLD-----------------MGFIPDVKRIVSQLPRKGER 307 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 QT+ SAT ++ L + G + + V+ + ++ ++ LL +R Sbjct: 308 QTLLFSATLEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVLRDEKLALLLYILR 367 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +RVL+ K + L L G V L DI +R++++ R G ++ Sbjct: 368 TE--PYDRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKIV 425 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + ++ G+ + +VSLV D + IGR R + GK+I + + Sbjct: 426 IATDVAARGIHVDDVSLVINYDLP-----ERAEDYVHRIGRTGRAGHNGKSISFLCEYGA 480 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 I + + + E+ P+ + + + Sbjct: 481 YYLPDIEKLLDVQFHSTQPTEDMLKMPEPVPGA--KLPKREADR 522 >UniRef50_Q30P62 DEAD/DEAH box helicase-like protein n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30P62_SULDN Length = 411 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 60/407 (14%), Positives = 125/407 (30%), Gaps = 16/407 (3%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L ++ L + + + + + + Sbjct: 5 KLGLSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPILELLS 64 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI-ENYSRFLSGRGPGEPPPTLFDYLPA 331 K + + T+ + + E G + + G GE + Sbjct: 65 RDSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLFNIQK 124 Query: 332 DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 ++V S + + L E L E Q + Sbjct: 125 GCDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEALGQKRQNL 184 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIRQRAA 444 SAT L + + + + +P +E + LL + + + Sbjct: 185 LFSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILVSRENRAPLLRHLLK-SE 243 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E V+V +KR A+++ +HG H D+ +R + + + + +L + Sbjct: 244 KYELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILFATD 303 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 L+ GLD+ +++ V D RS I IGR AR G AI + D + + Sbjct: 304 LVSRGLDINDITCVINFDLP-----RSSADYIHRIGRTARAGKAGMAISFIDHEDEAHFR 358 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 I + R K+++ +T + ++ G+ +K Sbjct: 359 LIEKRSNIRLKREQIEGFE-LTTEAPKREKGKEPIKGKGKSKKDRAR 404 >UniRef50_Q2S6I0 ATP-dependent RNA helicase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S6I0_SALRD Length = 478 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 55/412 (13%), Positives = 113/412 (27%), Gaps = 27/412 (6%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + L E ++ LT + ++ E Sbjct: 79 RDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQV---LILTPTRELARQIHEEFEQMKIA 135 Query: 307 ENYSRFLSGR--GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVE 363 + + G D L +V+ + I + R L E Sbjct: 136 TPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDE 195 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPT 416 L E + SAT + + D Sbjct: 196 ADEMLSMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSV 255 Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + + + + + E L+ TKR L ++L G + + Sbjct: 256 EENEYRYYLVNPMDKDRVMAQLL--ELEEPESALIFANTKREVSYLNKFLSNKGYDIDEM 313 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 D+ +R E + LR G+ +LV ++ G+D+ ++S V I D + +I Sbjct: 314 SGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVSDLSHVFIYDVP-----QDHEYII 368 Query: 537 QTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 GR AR G I+ K + T ++ + + ++++ Sbjct: 369 HRSGRTARAGEEGTTIVLSTHEDEYELKRMANTYDIELEKAELPADPHSEA----RELLQ 424 Query: 596 ILALGQN-IAKTKAKGRGKSRP-IVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 A + G P + E + ++ + + E + + Sbjct: 425 ERYANAEAPANGEEPGVEDFVPLVKELSDEQPELLASIITELYAEAKTEDEE 476 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 96/663 (14%), Positives = 207/663 (31%), Gaps = 76/663 (11%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 Q + + + L G+ I + +++ N+ Sbjct: 2 KLTEIVAQDKELGAFLINTQKNKKSL-LTGINE-RNLPLILLELLKQNNVLIIIEENENK 59 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +L + PE V+ Y T + A+ + R+ A Sbjct: 60 AQRLVDNLAPILPEEKVQ-------------YFAVDSTLATQRATASPDELAQRIKALHL 106 Query: 130 MLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L +VV + + Y L D Y++ + VG D + + + L Y + Sbjct: 107 LLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVASGYRKEALVA 166 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 + G F VRG+++DI+P +R+E F +EV+ + FD T + + + P Sbjct: 167 KPGEFAVRGDILDIYPL-DQVSPIRIEFFGDEVDTIKSFDVNTQKSILEKEEIVVLPACD 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + + +A IK+E+ LE+++EL + +N Sbjct: 226 RIFETDNLKKAYNLIKDEIKESPNSESAEQ-------------NFLEVLDELAQGNLPDN 272 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y+ +L YLP +GL+V ++ + + ++ G L Sbjct: 273 YA--FLVDYLLPKSCSLLSYLPENGLVVFNDWQAIKKADSEITDQNADFISDEIKAGLML 330 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 S L ++ + G +L + E Sbjct: 331 NSQKLRMNLTTVLRQSKHHRLYLSLFQKGMGQLRFDSLF---------NWPNREPEQ--F 379 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + SE+ + V++ +R ++ + L + + + Sbjct: 380 FSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNLPIV-----------T 428 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 +L + + V +G +P++ LV + + + ++ I + A R Sbjct: 429 KENLVEHKLQITV--GQFSQGFSLPQIQLVYLTERELFNTQVHKKRKILNLENAQR---- 482 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + K ++ + G + + I G + Sbjct: 483 -------LRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDYITITYQGHDQL---- 531 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 P + V + + + K+++L G + + I D L +L Sbjct: 532 -----FVPADQLSLVQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDLIKLYAA 586 Query: 669 FIA 671 + Sbjct: 587 RES 589 >UniRef50_A8NE02 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NE02_COPC7 Length = 640 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 52/452 (11%), Positives = 122/452 (26%), Gaps = 29/452 (6%) Query: 206 ESDDIAL-RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 + + + ++L + + L T + + + Sbjct: 101 QPERVPFNTLDLSEPTLRALKDMGFETMTSIQAKSIPVLLAGKDVLGAARTGSGKTLAFL 160 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L + T+ + + + S+ G P Sbjct: 161 IPAVELLHRLKFKPVNGTGIIILTPTRELALQIFGVAKDLMAYH-SQTFGVVIGGANPKA 219 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 D L L+V + + + R + E L + + Sbjct: 220 EVDKLSKGVNLLVATPGRLLDHLQNAKGFVYRNLRALVIDEADRILEIGFEEEMKRIISI 279 Query: 383 EA-LAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD---------PIIEVRPVATQ 431 Q++ SAT + + + V + V + Sbjct: 280 LPNENRQSMLFSATQTTKVTDLARISLRPGPVHVDVDKEEATSTVSTLSQGYVVCSSDMR 339 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L + +++ ++V+V + + E L V LH ++R + Sbjct: 340 FRLLYTFLKKNLK--KKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQMKRTNTFFE 397 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 E +L+ ++ GLD+P V + D R I +GR AR GK+ Sbjct: 398 FINAESGILLCTDVAARGLDIPRVDWIVQFDPP-----DDPRDYIHRVGRTARAGKVGKS 452 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 +L+ + + + + + + + E + ++ +L + K+ G Sbjct: 453 LLFLLESELGFLRYLKD-AKVPLNEYSFPAE---RIANIQTQLEKLLQKNYFLHKSAKDG 508 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 ++ L + ++ Sbjct: 509 FRSYLQSYASYSLKKIYDVNKLD--LAKVGKS 538 >UniRef50_A4AFV6 ATP-dependent RNA helicase n=4 Tax=Actinobacteria (class) RepID=A4AFV6_9ACTN Length = 757 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 107/369 (28%), Gaps = 29/369 (7%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + V F + + M L Sbjct: 394 SPFPIQAATIPD-VLAGKDVLGRGKTGSGKTIAFGAPLVERLMENNGGKDRQMGRKPRAL 452 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L Q + + + G + + P + D Sbjct: 453 ILAPTRELAQQIDRTIQPIARSVGLFTTTI-VGGVPQYKQVAALTRGVDVIIATPGRVED 511 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + L + + + M + + Sbjct: 512 LIEQGRLDLSQVKVTVLDEADHMCDLG-----------------FLEPVQRILRETSEGG 554 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP---IIEVRPVATQVDDLLSEIRQRAA 444 Q + SAT +VD V D I+ + + + D + I+Q +A Sbjct: 555 QKLLFSATLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVLLIEQRDKRAIIKQLSA 614 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + LV T T+ AE++ E+L G LH D++ R ++ L G+ +VLV + Sbjct: 615 GTGKTLVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATD 674 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 + G+ + ++SLV DA ++ + GR R GKA I + + Sbjct: 675 VAARGIHVDDISLVIQADAP-----EEYKTYLHRAGRTGRA--GKAGTVVTLIPRNRRRK 727 Query: 565 IGETERRRE 573 + E R E Sbjct: 728 MDELLGRAE 736 >UniRef50_UPI00006CA44F DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CA44F Length = 642 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 45/447 (10%), Positives = 121/447 (27%), Gaps = 33/447 (7%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFT------IYPKTHYVTPRERIVQAMEEIKEELA 268 +LFD+ D L + + + + + Sbjct: 151 DLFDDLEVCKPTKDALKQMKFTNMTHIQSRTIPHLLKGRDVLGAAKTGSGKTLAFLIPAI 210 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + T+ + ++ + +S+ L G Sbjct: 211 EMLYKTNFVQSMGTGIIVITPTRELATQIYDVAKQL-MFFHSKTLGLLIGGANRKAEAIK 269 Query: 329 LPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 L +++ + + + + E L + + + Sbjct: 270 LKTGVNMIIATPGRLLDHLQNTAGFAYHNLLGLIIDEADAILRIGFQEELTEILKLLPID 329 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQVDDLLS 437 QT+ SAT + + + + L+ + + L + Sbjct: 330 RQTVLFSATQNKKIDDLARLSLKQPIYIGVDDVAETSTVEGLEQGYVIIDADKKFRLLFT 389 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++++ +V+V + + ++ L V +H +R+ + Sbjct: 390 FLQKQKKK--KVMVFFSSCNSVKFHSDLLNYVDIPVLDIHGKQKQQKRLNTFYEFSNATS 447 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN--GKAILYGD 555 VL+ ++ GLD+P V + D + I +GR R N GKA+L+ Sbjct: 448 GVLLCTDVAARGLDIPNVDWIVQYDPP-----DDTKEYIHRVGRTCRGANTTGKALLFLL 502 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 K + + + + ++ E + + ++ + + + Sbjct: 503 PEEKDYLKYL-KAAKVNLNEYEFPE---NKLANIQDQFDKLVERNYFLNRCAFEAFRSYL 558 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGL 642 ++ L + ++ Sbjct: 559 HSYSAHSLKDIFDVANLD--LQKIGRS 583 >UniRef50_C1B4T7 ATP-dependent RNA helicase n=15 Tax=Actinomycetales RepID=C1B4T7_RHOOB Length = 465 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 47/392 (11%), Positives = 93/392 (23%), Gaps = 42/392 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 RG + FP ++ I +V F + Sbjct: 27 HALDRGGIAAPFPIQAATIP--------DVLAGRDVLGRAPTGSGKTLAFGLPMLVRL-- 76 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ-FDLEMMNELGYCSGIENYS 310 + + + L E G + + Sbjct: 77 ---KGAASRRGYPRGVVLVPTRELALQI--ERALDEPALSVGLRVANVVGGVPIKRQAET 131 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L D+L + + D + + + + M Sbjct: 132 LSRGVDLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLG---------------- 175 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRP 427 + + Q + SAT + + V T P + Sbjct: 176 -FLPQVTTILDKTPAGGQRLLFSATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHL 234 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + D S + + R L+ TK + + + L G LH R Sbjct: 235 LYVDRRDKYSVVAHIGSRPGRTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTR 294 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV- 546 + G VLV ++ G+ + ++LV +D + + GR AR Sbjct: 295 TLASFADGTTPVLVATDVAARGIHVDGITLVVHVDPPT-----EAKDYLHRAGRTARAGE 349 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKY 578 +G + + + + + Sbjct: 350 SGVVVTLVTEDERAAVEKLTRQAGLDITATPV 381 >UniRef50_A1SQH8 DEAD/DEAH box helicase domain protein n=2 Tax=Actinomycetales RepID=A1SQH8_NOCSJ Length = 507 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 45/377 (11%), Positives = 87/377 (23%), Gaps = 31/377 (8%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + F + A L Sbjct: 30 QPTPIQAATLPDSL-AGRDVLGRGRTGSGKTYAFLLPLVARL---TASGRPAQARKPRAL 85 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L N E + RT G + P L D Sbjct: 86 VLAPTRELVNQI-EEALKPLARTAGLTTQTVFGGVGQNPQVQGLRRGADIVLACPGRLED 144 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + + + M + + Sbjct: 145 LIGQGHCDLSQVEITVLDEADHMADL-----------------GFLPGVRRIMDRTPRDG 187 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAA 444 Q + SAT + + V + + + + + + + Sbjct: 188 QRLLFSATLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVLHVAREHRVPVLVDLTS 247 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 R +V T TK A+ L L + G LH ++ R + G LV + Sbjct: 248 APGRTVVFTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLVATD 307 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + G+ + +V+LV D ++ + GR AR G I + Sbjct: 308 IAARGIHVDDVALVVHADPPV-----EHKAYLHRSGRTARAGARGTVITLMTDDQVRDVR 362 Query: 564 AIGETERRREKQQKYNE 580 + + + N Sbjct: 363 DLTRAAGIKPTTTRING 379 >UniRef50_B1V1Y2 ATP-dependent RNA helicase DbpA n=2 Tax=Clostridium RepID=B1V1Y2_CLOPE Length = 453 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 48/416 (11%), Positives = 113/416 (27%), Gaps = 33/416 (7%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ ++ L+ V + + + Sbjct: 6 LNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGK----TASFGIPVCE 61 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + + + T+ + + G + +P L Sbjct: 62 KINIEEKKVQCLVLTPTRELAIQVKDELSNIGR-IKKVRCAAIFGKQPFNEQIRELKQRV 120 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + E L ++ L T Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 SAT E + + ++ ++++ EI + Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSK------VFNRDRIEESAIEIEE----------- 223 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 K + + + L++ G LH D++ +R+E++ + R F VLV ++ G+ + Sbjct: 224 ---KNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAARGIHV 280 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 + LV + S + IGR R GKAI + + + + E Sbjct: 281 DSIELVINYEVPM-----ETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 335 Query: 572 REKQQKYNEEHGITPQG-LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 ++ + + + K+ + K + G + + Sbjct: 336 EIRKASLPSDDEVKAGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKKKIR 391 >UniRef50_C0N6Y6 DEAD/DEAH box helicase domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6Y6_9GAMM Length = 402 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 52/376 (13%), Positives = 106/376 (28%), Gaps = 18/376 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L + + S ++ + + L + Sbjct: 8 LDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLLQKLLDEP 67 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + +L + L + ++ + + + ++ G+ P YL + Sbjct: 68 NHGRLPKALILAPTRELAFQIQHVIHHLGKA--NQPHIAMVTGGQAPTAQLAYLENGCDI 125 Query: 336 VVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 V+ + + + E L A QT SA Sbjct: 126 VIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQTSLFSA 185 Query: 395 T-PGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-------PVATQVDDLLSEIRQRAAIN 446 T G+ + + + + + LL+ + + Sbjct: 186 TLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHKQALLAAVIK-QTDC 244 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E L+ K AE+++ +L+ + +H D + +R E R R G+ LV ++ Sbjct: 245 ESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVATDVA 304 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 GLD+P+VS V D G I +GR R G A+ + + + Sbjct: 305 ARGLDLPQVSHVINYDVPFRG-----DIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQRV 359 Query: 566 GETERRREKQQKYNEE 581 + K Sbjct: 360 EHHIGQPLPVLKMKGL 375 >UniRef50_A4IDF5 DEAD box RNA helicase, putative n=6 Tax=Trypanosomatidae RepID=A4IDF5_LEIIN Length = 658 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 46/409 (11%), Positives = 102/409 (24%), Gaps = 25/409 (6%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 +E+ F LT IP + + + Sbjct: 178 LEQEFKFKELTPIQSRCIPAALQG--RDLLAEAKTGAGKTLAFLIPIVEIVCRSGFRPSN 235 Query: 281 LEEQRLTQRTQFDLEMMN-ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + T+ + L N S G+ L ++VV Sbjct: 236 GTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGVMIVVAS 295 Query: 340 SHVTIPQIGGMYRGD--RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + E L + + + QT SAT Sbjct: 296 PGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQTFLFSATQT 355 Query: 398 NYELEKSG-GDVVDQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + + + L+ V ++ L +++ + Sbjct: 356 TRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFVKKNLK--K 413 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V+V ++ E H +R VL ++ Sbjct: 414 KVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLFTTDVAA 473 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+PEV + D + +GR AR G A+++ K + Sbjct: 474 RGLDIPEVDWIVQFDPP-----DDPVKYVHRVGRTARAGRCGNALMFLLPQEELFLKYLY 528 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + + + +Y + + ++ +++ + + + Sbjct: 529 DDAKVKVN--EYTFDLTRLKGNVQGQLEQLVSSNYYLRTSARQAYEGYL 575 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 113/678 (16%), Positives = 228/678 (33%), Gaps = 114/678 (16%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A ++L +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH--IEQMRLSA 126 A +L ++ + E ++P + A + + +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEE--------------PGFLPDPSLLPYQRAVSDRNSSLEKMRLAG 112 Query: 127 T--KAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + ++V +V A+ P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 113 ILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQ 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI Sbjct: 173 ESIVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + + + + L L +N E R D+ +NE Sbjct: 232 SPASELFHLGQLTRKDINNRLDIL-------LTDNLNPEFSRTLSA---DINHLNEGLKP 281 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 E ++ + ++ DYLP+D L+V+DE + + + + Sbjct: 282 EYPEFFAPLFNTS-------SILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLS 334 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G E L + + A+ G D + Sbjct: 335 HGELPSVYPRPYFNWAEISAMLKTKKRLIMASFGRESESL---------KLDFASPDNYV 385 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L ++ + RV++ + A L E L+E Sbjct: 386 ------GRLSGLYEKLPELKGHTGRVVIVS---HQAARLAELLKERSILAVV-------- 428 Query: 484 ERMEIIRDLRLGEFDVL---------VGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 + DVL + +L G + + +L + DA+ GF++ Sbjct: 429 ------------QTDVLTPPPPASLSLVQGILGSGWSLSD-NLHILTDAELFGFVK---- 471 Query: 535 LIQTIGRAAR--NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 Q + R G + K ++ + G++K+ Sbjct: 472 --QRRLPSKRPSARKGVVL---------DIKPGEFVVHIDHGVALFSGVSHMNRDGMDKE 520 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + + G + P + D V + +H L Q A+ Sbjct: 521 YLILQYAGGDKL---------YVPTDQMDRVNRFIGSGDEPPSLHRLGTQEWQRAKEKAS 571 Query: 653 EEAAQIRDQLHQLRELFI 670 E A + +L + Sbjct: 572 ESAEETARELLDIYAKRE 589 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 58/434 (13%), Positives = 118/434 (27%), Gaps = 35/434 (8%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + D L P + + I+ A + Sbjct: 613 VETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTT 672 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q E + + + R + + + + + +H Sbjct: 673 VLAQQHYTTFRERLATFPVKVEVLSRFRSQ------SEQKEVVENMEKGEVDICIGTHRL 726 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + +F + + +SATP L Sbjct: 727 LQADIKFKDLGLVIIDEE--------QRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHM 778 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDL 462 S V D V T + + VA + L+ I + N +V + L Sbjct: 779 SMVGVRDMSVIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLL 838 Query: 463 TEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 E +++ H + + ++ D E DVLV ++ G+D+P + + I Sbjct: 839 AERIQKLVPEARIGIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLII 898 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 AD+ G + L Q GR R+ + K + +R K Sbjct: 899 NRADRFGLTQ----LYQLRGRVGRSSQLAYAYFLYDKE----KHLSGDAEKRLKTIYEAA 950 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 E G G + D+ G + ++V ++ + L + + L+ Sbjct: 951 ELG---AGYGIAMKDLEIRGAGTLLGVKQSGY-------INSVGFNLYTQMLSEAVAGLK 1000 Query: 641 GLMMQHAQNLEFEE 654 ++ + Sbjct: 1001 AAGSGLSKEEIRIQ 1014 >UniRef50_Q3BYG2 ATP-dependent RNA helicase n=18 Tax=Proteobacteria RepID=Q3BYG2_XANC5 Length = 453 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 100/382 (26%), Gaps = 38/382 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++V + + + + + E+ + + L Sbjct: 52 TPIQVAMIPPMLAA-RDLIATAQTGSGKTLAYALPLLLQRLQAPEQAPRVLGG----LIL 106 Query: 270 RRKVLLENNKLLEEQ-RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + + G + + P L D Sbjct: 107 VPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLLDL 166 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + L + S + + + + + Q Sbjct: 167 VTHNALRLSQVSTLVLDEADRLLDLG-----------------FGAELDRILALLPAQRQ 209 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ VSAT + + D + + + L + + Sbjct: 210 SVLVSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDAGQRTQLLRHLLLE 269 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++LV ++ A+ + E L + G LH ++ R +R + + VLV Sbjct: 270 H--GWPQLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLV 327 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 +L G+D+ + V D RS IGR AR +G AI + + Sbjct: 328 ATDLAGRGIDIDALPAVLNYDLP-----RSTVDYTHRIGRTARAGASGVAISFVTADSAQ 382 Query: 561 MAKAIGETERRREKQQKYNEEH 582 + I + + R Sbjct: 383 QWRLIEKRQGLRVPTSVIEGFE 404 >UniRef50_C0Z3A8 AT4G16630 protein (Fragment) n=4 Tax=Viridiplantae RepID=C0Z3A8_ARATH Length = 617 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 57/465 (12%), Positives = 123/465 (26%), Gaps = 45/465 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + F + + Sbjct: 125 YKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAAFALPTLERLL-----FRPKRVFATR 178 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L Q L Q T + G + P + Sbjct: 179 VLILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRM 237 Query: 326 FDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D+L + + D + + + + + + + Sbjct: 238 IDHLRNSMSVDLDDLAVLILDEADRLLQTG-----------------FATEITELVRLCP 280 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLL 436 QT+ SAT E + + + ++ +R + + Sbjct: 281 KRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAV 340 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +V++ + TK+ A L G + LH ++ +R++ + R E Sbjct: 341 LLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQE 400 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 D L+ ++ GLD+ V V R S + +GR AR G A+ + Sbjct: 401 VDFLIATDVAARGLDIIGVQTVINYACP-----REIDSYVHRVGRTARAGREGYAVTFVT 455 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 S+ K I + + K + E+ + + ++ D Q A A+ ++ Sbjct: 456 DSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMED-----QYSAVISAERDERAL 510 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 E + + + + + + A +D Sbjct: 511 RKAEMEFAKAENMLEHRDEIYAR-PKRTWFMTEKEKKLVAQAEKD 554 >UniRef50_Q8SR63 ATP-dependent rRNA helicase RRP3 n=1 Tax=Encephalitozoon cuniculi RepID=RRP3_ENCCU Length = 400 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 102/383 (26%), Gaps = 44/383 (11%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ ++ + + ++ F + +H + Sbjct: 22 TRPTEVQRQVIPAVLGGGDVI-AVSQTGSGKTLAFVLPIVSHLLQKNRSF--------YC 72 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + + G ++ P + Sbjct: 73 LVVAPTRELSSQIAECFNMFQAT--GLRVCLLVGGANFNVQANQLSKRPHVVVGTPGRIA 130 Query: 327 DY-LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 ++ L + + + D Sbjct: 131 EHVLKTKSFRTERVRKFVLDEADRFFEQDFV-----------------EDLETIIPSLRE 173 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSE 438 QT+ +AT + + S + L + + L+ Sbjct: 174 KRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVEL 233 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + V+V A ++ L G LH ++ +R E +R + F+ Sbjct: 234 L--EMSQGMSVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFN 291 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VLV +L GLD+ V LV D K G + I +GR AR G AI + Sbjct: 292 VLVCTDLGSRGLDISHVDLVINFDVPKSG-----KDYIHRVGRTARAGRSGTAITLVTQY 346 Query: 558 TPSMAKAIGETERRREKQQKYNE 580 + I T ++ ++ K + Sbjct: 347 DVEQIQKIEFTLEKKLEEFKMMK 369 >UniRef50_Q5QWG1 ATP-dependent RNA helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QWG1_IDILO Length = 474 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 122/460 (26%), Gaps = 78/460 (16%) Query: 150 DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 P+L L+L A+L RL E+ Y + P +S Sbjct: 17 SPELLHFNQLNL-------PPALLTRLDEIGYQQMT------------------PVQSLS 51 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + + + + F + +A + L Sbjct: 52 LPV--------ILNNTDAVVRADTGSGKTTAFALTLLAKL--------EAKSFSPQALVL 95 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + E ++L + + G S I+ S P + D+L Sbjct: 96 CPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGAHVLVGTPGRVLDHL 155 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + + + + + M + + QT Sbjct: 156 EQRNVDLSMLTTLVLDEADRMLE-----------------MGFQDSLNAIVKHIPKTRQT 198 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVDDLLSEIRQRA--AI 445 + SAT + P IE A +D + Sbjct: 199 LLFSATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQ 258 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E LV TK +D+ L + V LH +++ +R + I G VL+ ++ Sbjct: 259 PENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDV 318 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ E+ LV + IGR R G AI + + Sbjct: 319 ASRGLDIAELDLVI-----SVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRL 373 Query: 565 IGETERRREKQQKYNEE----------HGITPQGLNKKVV 594 + +T + + I G K + Sbjct: 374 LEDTFAEPIQVKPAPALSNNRPLKANMSTIQVSGGKKDKL 413 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 203/659 (30%), Gaps = 81/659 (12%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 ++ G Q L+ + G ++ ++A +I + ++++ + A L E+ + V Sbjct: 11 SVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDV 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P +T S ++ + RL + V+ ++ + Sbjct: 71 NL-----------CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLM 119 Query: 147 GLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 120 VRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPT 179 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+ELFD+E+E + FD T + + + P + T I + + Sbjct: 180 GCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRR 238 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 K + ++++ +GIENY +L Sbjct: 239 RFEVISKE----------------AESVYQLVSRNLMPAGIENYLPLFFDDT-----ASL 277 Query: 326 FDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 FDYLP + + + D + + P L + Sbjct: 278 FDYLPENTQLITLGDIDKACANHLTE-IHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAF 336 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV---ATQVDDLLSEIR 440 ++ + TPG+ + V + L + P ++ L ++ Sbjct: 337 KPYKRSQFFIHTPGDA--QLGEDGTKKDVAKKDSALQANVAPLPDINANHKLKQPLESLQ 394 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV- 499 A + +L + ++ E L L + G + + + + + Sbjct: 395 AFAQDGKPLLFSAESEGRREALLALLSKIGIKPTLF----------KHLDEFLDASVPLK 444 Query: 500 -----LVGINLLREG---LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 L+ L G LD P+ L I + + G I + R K + Sbjct: 445 GPVHGLIVS-PLSRGCTLLDSPKGELSLICETELFG---------HKIAQQRRRDKQKQV 494 Query: 552 LY-GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + K Y + GL + + + G + Sbjct: 495 SSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKL------ 548 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + + ++++L A+ E+ + +L + Sbjct: 549 ---YVPVSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARR 604 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 57/424 (13%), Positives = 114/424 (26%), Gaps = 35/424 (8%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 D + I V + ++ A + Sbjct: 629 EETVDQESAIIAVLNDMQAPTSMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTT 688 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q + + + + IE SRF S + + L + +V +H Sbjct: 689 LLAQQHYENFKDRFAD--WPVEIEVMSRFRSA----KEQEQVLQSLSEGKVDIVIGTHKL 742 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + R + + + ++ATP L Sbjct: 743 LQSEAKFVDLGLLIIDEE--------HRFGVRQKEKIKALRANVDILTLTATPIPRTLNM 794 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + D + T + V + + + +V E Sbjct: 795 AMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGGQVYYLHNNVETIEKC 854 Query: 463 TEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + L + R + H + + +++ D F+VLV ++ G+D+P + + I Sbjct: 855 AQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVI 914 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 ADK G + L Q GR R+ + K I R+R + E Sbjct: 915 DRADKFGLAQ----LHQLRGRVGRSHHQAYAYMITP----PIKLISTDARKRLEAIDALE 966 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 E G G D+ G + + + + L+ + L+ Sbjct: 967 ELG---AGFMLATQDLEIRGAGELLGDEQSG-------HISKIGFSLYMEMLESAVSALK 1016 Query: 641 GLMM 644 Sbjct: 1017 EGKE 1020 >UniRef50_Q185X0 ATP-dependent RNA helicase n=7 Tax=Clostridium difficile RepID=Q185X0_CLOD6 Length = 497 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 58/406 (14%), Positives = 122/406 (30%), Gaps = 26/406 (6%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + A + + + + T+ + + G Sbjct: 41 QNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKV 100 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLP 369 R S + L +VV + I + + + + E Sbjct: 101 RC-SAIFGKQSIKDQIAELKQRVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFN 159 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----------- 418 + K SAT ++D V Sbjct: 160 KGFVEQMEKILLNLPKEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQ 219 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 +D I + L I + V++ TK L + + G +R LH+ Sbjct: 220 IDDKIIKANGREKYILLKELIYSE--NPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHA 277 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ R+ +I+D + +F++LV ++ G+ + ++SLV D + + + I Sbjct: 278 DLSQERRIFVIKDFKNQKFNILVSSDVASRGIHIDDISLVINYDVP-----QDKENYIHR 332 Query: 539 IGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 IGR R +GKAI + + I K NE I + V Sbjct: 333 IGRTGRKGNSGKAITIVTEKDEKYIENIETYIG-----YKINELTDIEQSRITHGKVLFE 387 Query: 598 ALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + I K +K + + + ++ +++ + ++ ++ + Sbjct: 388 EYSKGILKKVSKRKKVDKNSYKSKDIKLNIESEVVKLYLNAGKKKK 433 >UniRef50_O15919 Mitochondrial DEAD box protein n=3 Tax=Trypanosoma brucei RepID=O15919_9TRYP Length = 546 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 56/443 (12%), Positives = 121/443 (27%), Gaps = 62/443 (13%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 P +S I + ++ L F + + Sbjct: 137 GFSCTTPIQSYTIPV--------LDEGHDMIGLAPTGSGKTVAFAVPALKKFQWSPNGS- 187 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L +L+ G + Sbjct: 188 ------PRIVVLAPTRELVQQTAKVFHQLSSGK--VRVCERYGGAPREAQARRLHNGCDV 239 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D+L ++ + S + + + + Sbjct: 240 LVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLD-----------------MGFKVQLD 282 Query: 378 KFEEFEALAP--QTIYVSATPGNYELEKSGGDV-VDQVVRPTGLL-------DPIIEVRP 427 + + QT+ SAT + + + ++ V +G + I + Sbjct: 283 DILGYFSSHRPAQTMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIF 342 Query: 428 VATQVDDLLSEIRQRAAINE------RVLVTTLTKRMAEDLTEYL-EEHGERVRYL---H 477 A ++ + + + ++++ + E+ L G R + H Sbjct: 343 FADAPEERVKTLVSLIKEGKIDENTAKMMIFVERQTDTENAAYALARMLGIHSRCIGVVH 402 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 + +R I+ + G +LV ++ GLD P+V+ V L A ++ S Sbjct: 403 GGMQQRQRDHIMGIFKEGRIRILVATDVASRGLDFPDVTCVVNLIAP-----KNIDSYCH 457 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH--GITPQGLNKKVV 594 IGR R G++ + + S+AK + + QG K + Sbjct: 458 RIGRTGRAGRTGESFTFIGRSDGSLAKDLINYLEKCGMDVPQRLVEFAEEHAQGEEIKRM 517 Query: 595 DILALGQNIAKTKAKGRGKSRPI 617 G+ + +++ RG P Sbjct: 518 KRPWRGRQQREGRSQSRGGREPA 540 >UniRef50_Q1QAQ0 DEAD/DEAH box helicase-like n=5 Tax=Gammaproteobacteria RepID=Q1QAQ0_PSYCK Length = 384 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 42/379 (11%), Positives = 103/379 (27%), Gaps = 29/379 (7%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR-ERIVQAMEEIK 264 ++ ++ ++ + F + + + Sbjct: 25 FTELTPIQAKILPHTLANQDAIG-QAQTGTGKTATFLLTIMEALLKRPFAADEERHLGEP 83 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + L + LT+ T + ++ P Sbjct: 84 RAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYETQQHELERQYVDILIATPGR 143 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + + + + + M + G P Sbjct: 144 LIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLV-GRMPP--------------N 188 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ 441 Q++ SAT + + + + ++ D L + + Sbjct: 189 TDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQKLEAVER 248 Query: 442 RAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + E+V++ K + L L + G ++ L D+ +R + ++ + G V Sbjct: 249 IITDSTVEKVIIFANRKDQVKRLYHKLRQ-GHKIVMLSGDVIQQKREKYLQRFKDGHASV 307 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 LV ++ G+ + +VS V + IGR R G +I + + Sbjct: 308 LVATDVAGRGIHVDDVSHVINY-----TLPDQPDDYVHRIGRTGRAGQTGISISFVSEDD 362 Query: 559 PSMAKAIGETERRREKQQK 577 A+ + + K ++ Sbjct: 363 AFNIPALEKHLDTKFKLEQ 381 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 93/631 (14%), Positives = 180/631 (28%), Gaps = 82/631 (12%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + G+ ++ A + QRP ++L PN + E + F P+ Sbjct: 22 IYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPA------------P 69 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MM 158 P + + RL+ + E R V +A +SA+ P +L Sbjct: 70 LVFPDREILPYDRLAPPADATATRLATLATLPEWR-GVCLAPLSAVLQRLPPRSFLDQHA 128 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L VG + +RL + Y + + G RG +ID+FP+ S + R+ELFD Sbjct: 129 FVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGS-PLPYRIELFD 187 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 VE + FDP T + + + ++ P + + + + + Sbjct: 188 RVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGDPQR----- 242 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + G E+Y L + P DG++ + Sbjct: 243 ------------AEIYRAASRGQAPQGAEHYLPLFFPEC-----SHLLMHFPVDGVVFL- 284 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + R E D L E+E + V Sbjct: 285 -PPGLEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEG 343 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 P+ ++ L + RV++ + Sbjct: 344 DAERL--------------PTAPLPDLHGSPEAPLASLDTFLRHLPTTGRVILAAESPGR 389 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE---V 515 E L+E L + G +H + G + + + L GL + E V Sbjct: 390 QEALSERLGKSGLLPSRVH----------DWPEFLAGTERIAITVAPLERGLLIKENGLV 439 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 L + +A G R Q AR + + ++ + Sbjct: 440 RLALVSEAQIFGD----RVFAQRRSANARQRSIEGLV----RDLGELQPGDAVTHEEYGI 491 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 ++ + + + A G P D + + A + Sbjct: 492 GRFQGMATPFASQGDI--------NEYVVLEYANGDLVYVPADHLDRIARYVGNGATEPV 543 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + L + + ++A +L + Sbjct: 544 LSRLGSNHWEKVKAKARQKAVDAASELLDIY 574 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 115/405 (28%), Gaps = 35/405 (8%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + +P V + ++ A + Q + Sbjct: 617 DMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAVLVPTTLLAQQHYENFRNRCA 676 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G +E SRF + + + + + ++ +H + + + Sbjct: 677 --GLPLRVEVLSRFQNA----KTHKQVLTAVSVGEVDILIGTHRLLQKDVAFHDLGLL-- 728 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 L E R + + + ++ATP L S + D + T Sbjct: 729 -ILDEEHR-----FGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLSIIATPP 782 Query: 419 LDPIIEVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--Y 475 V D ++ ++ +V R E + L R Sbjct: 783 QRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLRRLLPEARLRV 842 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E ++ D FD+L+ ++ G+D P + + I ADK G + L Sbjct: 843 AHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRADKFGLAQ----L 898 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ +A+ + RRR + E+ G+ G D Sbjct: 899 HQLRGRVGRSHQRAYAYLFTPD----LRAMSDDARRRLDAIQSLEDLGV---GFALASHD 951 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + + D V + + L + + Sbjct: 952 LEIRGAGELLGEEQSG-------HMDEVGFTLFMEWLDDAVEAIR 989 >UniRef50_Q6MBR0 Putative ATP-dependent RNA helicase n=2 Tax=Parachlamydiaceae RepID=Q6MBR0_PARUW Length = 407 Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats. Identities = 51/409 (12%), Positives = 114/409 (27%), Gaps = 42/409 (10%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 TF + ++ + R++ +++ L+ I Sbjct: 19 TFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNRV- 77 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + L L E Q++ + + G S ++ Sbjct: 78 -------NTELTDIQALIIVPTRELALQYATETQKIGK-YKGVKAFAIFGGEDSALQQSK 129 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + P L D++ + + + + + + L Sbjct: 130 LKHGVQVLVATPGRLIDFIYSRQIDLSHVETLILDEADE-----------------MLSM 172 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPII 423 + + + + QT+ SAT + + D LL+ Sbjct: 173 GFYDDLVFIIQCLNHSHQTLLFSATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCF 232 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +L+ I++ + ++ ++ E + L+ H + V +LH+ ++ Sbjct: 233 VYCLAHQRDHELIQLIKE--NNPTQAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQD 290 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R + R G+ +LV +++ GLD +VS V I + GR Sbjct: 291 IRTIVTNKFRTGKIRLLVATDIVARGLDFSKVSHVFIY-----QLSHESDVYVHRSGRTG 345 Query: 544 RNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R G I AI + ++ + K Sbjct: 346 RYGKTGVVISLVTSRELPYLNAILKQIKQEPRWIGCPPPEKQEAAKPRK 394 >UniRef50_C4M8U4 DEAD/DEAH box helicase, putative n=2 Tax=Entamoeba RepID=C4M8U4_ENTHI Length = 542 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 47/414 (11%), Positives = 121/414 (29%), Gaps = 26/414 (6%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE-EQRLTQRTQ 291 + + + + + + ++ + Sbjct: 105 TTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEILNKIHFQTRNGTGAIIISPTRE 164 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 ++ + L +R L G + L +VV + I Sbjct: 165 LAIQTFDVLEKILAHSERTRTL--IIGGSSKKKEEEALKKGASIVVATPGRLLDHIINTK 222 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + E + + + QT+ SAT + + + Sbjct: 223 CFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTMLFSATQSEKVDDIANISLK 282 Query: 410 DQVVRPTGL---------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 VV L+ + + L + +R+ N++ +V + + + Sbjct: 283 QPVVINVESQSTISTSSKLEQGYVLIEAKDRFRLLYTFLRK--NKNKKTIVFMSSCKAVK 340 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 ++ L V+ LH +D +R ++ + + +L+ ++ GLD+P V + Sbjct: 341 FYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTDIAARGLDIPAVDWIIQ 400 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 +D S + I +GR AR G+A+L+ + + + + +Y Sbjct: 401 VDLP-----DSPKDYIHRVGRTARADTKGRALLFVQPCE---IRILEYLKGEKIPLTQY- 451 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 E + +++ ++ + G ++ + L Sbjct: 452 EVPEKKIANIQRELEKLVEKNYYLNTEAKDGYKAYIMAYNSRSLKDVFNVNDLD 505 >UniRef50_A6VVZ5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=A6VVZ5_MARMS Length = 448 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 58/413 (14%), Positives = 114/413 (27%), Gaps = 39/413 (9%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E + + + + + + L Sbjct: 34 EAMAGRDLLASSKTGSGKTLAYLLPALHRV----YKKKALSKRDPRVVILVPTRELAKQV 89 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + + L ++ ++ + G ++ S P L D+L + + Sbjct: 90 FGQLRLLLAASR-FTSILIQGGENFNDQHKSLQKDPHFIVATPGRLVDHLKQRHVFLEGL 148 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEALAPQTIYVSAT-PG 397 + + + M + QT++ SAT Sbjct: 149 ELLVLDEADRMLDL-----------------GFADAMRAINSAASHRQRQTLFFSATLDN 191 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 E +G + + G + + + + LL + ++ + Sbjct: 192 TEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKHLL-VGQTIKQAI 250 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T TK L+E + G + L+ ++ R + + G+FDVLV ++ GL Sbjct: 251 VFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDVLVSTDVASRGL 310 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETE 569 D+ VS V D + + GR R G A KAI Sbjct: 311 DIASVSHVFNFDLP-----KQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFKAIEVFL 365 Query: 570 RRREKQQKYNEEHGITPQGL-NKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 ++ + L K G A TKA + +P+ + Sbjct: 366 QKTFTTESIEGLEAKFKGLLPPKPARQETKKGSTKAPTKASKKTNKKPVGKAR 418 >UniRef50_C4R2K9 RNA helicase in the DEAD-box family, involved in RNA isomerization at the 5' splice site n=1 Tax=Pichia pastoris GS115 RepID=C4R2K9_PICPG Length = 555 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 55/425 (12%), Positives = 121/425 (28%), Gaps = 45/425 (10%) Query: 191 GTFRVRGEVIDI--FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G ++ E++DI + ++ + + + I + Sbjct: 159 GESNIKKEILDIVHSLGFDEPTPIQRASIPLALAS-RDLIGIAKTGSGKTLAYIIPALNY 217 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + I + L L E ++ T + ++ + G+ Sbjct: 218 LLQLPHLESGDQ--IPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLI-GGHSIEENV 274 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 S P L D + + + +V + + M Sbjct: 275 NSISRGCEIVVATPGRLLDCYERKMISLAECYYVVLDEADRMID---------------- 318 Query: 369 PSALDNRPLKFEEFEALA--------PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + + LK + T +AT + + + G L Sbjct: 319 -MGFEVQVLKILKLLPTDQNRFTSRPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGELG 377 Query: 421 PIIEVRPVATQ----VDDLLSEIRQRA-AINERVLVTTLTKRMAEDLTEYLEEH-GERVR 474 +++ + + L+ + + +++ K+ E L L ++ Sbjct: 378 TVVDTVTQEVRYFPNENAKLNHLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSST 437 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +H + +R I++LR G+ DVL+ +L G+D+P VSLV S Sbjct: 438 VIHGSKNQDQRELAIQNLRSGKIDVLIATDLAGRGIDIPNVSLVVN-----FQMANGLDS 492 Query: 535 LIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 IGR R G +I Y + + + + + + + Sbjct: 493 YTHRIGRTGRAGNRGYSITYLGPEDSEIFSEFRKLLVKSGSKIPAELRQHDMNE--KRNM 550 Query: 594 VDILA 598 +I Sbjct: 551 RNIEL 555 >UniRef50_C5LY29 DEAD box RNA helicase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LY29_9ALVE Length = 367 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 91/313 (29%), Gaps = 25/313 (7%) Query: 283 EQRLTQRTQFDLE---MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 L + ++ LG + G T L ++V Sbjct: 32 ACVLAPTRELCVQTGQQFEGLGASIN-----LTTATIVGGLDMVTQAMSLSKKPHIIVAS 86 Query: 340 SHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + + + E L ++ K + QT SAT Sbjct: 87 PGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMT 146 Query: 398 NYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 N + + V L P + L + + V+ Sbjct: 147 NKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLS--TVM 204 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T A+ + L G LH + R+ + R G +LV ++ GL Sbjct: 205 IFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSILVATDVAARGL 264 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+P V +V D ++ I +GR AR G+++ + + I + Sbjct: 265 DIPSVDVVINFDVP-----KNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRIENKQ 319 Query: 570 RRREKQQKYNEEH 582 ++ ++ E Sbjct: 320 GKKMEEFPEVNEE 332 >UniRef50_Q9ZRZ8 DEAD-box ATP-dependent RNA helicase 28 n=12 Tax=Embryophyta RepID=RH28_ARATH Length = 789 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 57/465 (12%), Positives = 123/465 (26%), Gaps = 45/465 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + F + + Sbjct: 187 YKKPTPIQAACIPLAL-TGRDLCASAITGSGKTAAFALPTLERLL-----FRPKRVFATR 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L Q L Q T + G + P + Sbjct: 241 VLILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRM 299 Query: 326 FDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 D+L + + D + + + + + + + Sbjct: 300 IDHLRNSMSVDLDDLAVLILDEADRLLQTG-----------------FATEITELVRLCP 342 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLL 436 QT+ SAT E + + + ++ +R + + Sbjct: 343 KRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAV 402 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +V++ + TK+ A L G + LH ++ +R++ + R E Sbjct: 403 LLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQE 462 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 D L+ ++ GLD+ V V R S + +GR AR G A+ + Sbjct: 463 VDFLIATDVAARGLDIIGVQTVINYACP-----REIDSYVHRVGRTARAGREGYAVTFVT 517 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 S+ K I + + K + E+ + + ++ D Q A A+ ++ Sbjct: 518 DSDRSLLKVIAKKVGSKLKSRVIPEQSIVKWSQIIDEMED-----QYSAVISAERDERAL 572 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 E + + + + + + A +D Sbjct: 573 RKAEMEFAKAENMLEHRDEIYAR-PKRTWFMTEKEKKLVAQAEKD 616 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 102/721 (14%), Positives = 206/721 (28%), Gaps = 116/721 (16%) Query: 11 FKPSGDQPEAIRRLEEGLED---GLAHQTLLGVTGSGKTFTIANV--------------- 52 + + + + + +T++ T + +A + Sbjct: 6 LLTALTEDRSFANIRAQAARPLAERSAETIISATDGLRAPVLAQIAAGLADDAAASAPAG 65 Query: 53 ----IADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 A+ P ++ + A +L + + P + PS +T Sbjct: 66 SGTSAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIAN-------------FPSWET 112 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERRD-----VVVVASVSAIYGLGDPDLYLKMMLHLT 162 + S RLS + + VVVA V ++ L + L Sbjct: 113 LPHERLSPRSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLR 172 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 G D + ++ LA Y+R D +RG F VRG +ID+FP ++D +R E F +E++ Sbjct: 173 TGQDYDFQQLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELD 231 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + F + +T E + EL V KL E Sbjct: 232 EMRWFAVADQRT---------------LTTAEHPSVIVAPPCRELLITPSVQSRAAKLKE 276 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + + LE + Y G+E+ + L+ + + LPA + VV E Sbjct: 277 Q---LPGGREMLERIAGGQYVEGMESLAPLLA-----DEMLQVMSLLPAGSMTVVLEPEK 328 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + + + A + + + A S + Sbjct: 329 VRARAHDLVATNEEFLMAAWDSASGGSEAPLDLNAALDTDDDAARTLSSGSFHTIAEVRD 388 Query: 403 KSGG--------------------------------DVVDQVVRPTGLLDPIIEVRPVAT 430 + D +P + Sbjct: 389 LALERSVGWWSVTGLNVNAVTTSQMDADTSDEEVHLADTDADTLTVTAREPTR----FSG 444 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 V +LS + +RA + R+++ T + L+E L + Sbjct: 445 DVPAVLSFLGERAREDWRIVLVTDGPGPLQRLSELLHGADVPAARY---------DSVDD 495 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 + G + + G + + + +AD G + + + R N Sbjct: 496 APQPGLVE--LTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERKLPQRRKRNQ-- 551 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + + + +T G K V + L L +K Sbjct: 552 VDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPR 611 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P + D V + + + ++ G + + +I ++L +L + Sbjct: 612 DRLFVPTDQLDQVSTYVGGE--APSLSKMGGADWNKTKRSAKKAVKEIANELIRLYSARM 669 Query: 671 A 671 A Sbjct: 670 A 670 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/470 (14%), Positives = 131/470 (27%), Gaps = 39/470 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + EL ++ + D LT P ++ + ++ Sbjct: 679 DTPWQREL-EQAFPYIETPDQLTTIDEVKADMERPIPMDRLISGDVGYGKTEVAVRAAFK 737 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + + Q ++ E + G+ + SRF + + + Sbjct: 738 AVQDGKQVAVLVPTTLLAQQHSETFAERFS--GFPVRLATLSRFQTAKESKATM----EG 791 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + + VV +H + + + + + Sbjct: 792 LRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEE--------QRFGVEHKEKLKAMRTDVD 843 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINE 447 + +SATP LE S + + T + + V + + IR+ Sbjct: 844 VLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRRELMREG 903 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E + L E H + +II D +FDVLV + Sbjct: 904 QVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLVCTTI 963 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD+ G + L Q GR R + Sbjct: 964 VETGLDIANANTLIVDHADRYGLSQ----LHQLRGRVGRGRERAYAYFLYPAEKP----- 1014 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++ K H G+ + D+ G + V Sbjct: 1015 --LSETALERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSG-------HIAGVGF 1065 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFIAA 672 DM + + + + E G ++ E A D + R A Sbjct: 1066 DMYLRLVGEAVAEYRGDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAY 1115 >UniRef50_B7C8E9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8E9_9FIRM Length = 475 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 107/367 (29%), Gaps = 15/367 (4%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L ++ L V I +T + A Sbjct: 5 QMNLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGK----TASFAIPII 60 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 LE ++ + + T+ + + G + L +P + L Sbjct: 61 QNLEIDERSPQALVLTPTRELALQIQQDFDRIGTFKKIKTL-PIFGKQPFKFQKEDLKQR 119 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +V+ + + + + L E L + ++ T Sbjct: 120 CHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCL 179 Query: 392 VSATPGNYELEKSGGDVVDQVVRP---TGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 SAT S + T + + E V + +L E Sbjct: 180 FSATYPAVIQRMSKKYLYKPAKVDLTSTNKPNILEEAYHVNEEHKELFLLHLLALKKPES 239 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ T+ + + LE++ V +H + ER+ +R + G+ +LV ++ Sbjct: 240 CMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVASR 299 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ +V ++ D + IGR+ R G AI ++ + + E Sbjct: 300 GIDVFKVEMIINYDMP-----SPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKLEE 354 Query: 568 TERRREK 574 Sbjct: 355 YLGYNLP 361 >UniRef50_B3PD22 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PD22_CELJU Length = 493 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 65/478 (13%), Positives = 125/478 (26%), Gaps = 61/478 (12%) Query: 165 MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERL 224 +I + + +AE Y + + Q +E Sbjct: 32 DLIADTQLRKAIAEQGYEQPTEVQQA-------------------------AIPRALEGK 66 Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 +L + F + + L L + Q Sbjct: 67 NLL-VSSKTGSGKTAAFLLPCLQQILAQ----SAVNPRSTRLLILTPTRELARQIVKNAQ 121 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 L R G + + P L +++ + + Sbjct: 122 SLL-RFTSIKVGSICGGEELRYQKALLRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVL 180 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG-NYELEK 403 + M L LK E A QT+ SAT Sbjct: 181 DEADRMLD-----------------MGLSEDVLKIVESCDAARQTLLFSATLEQKGLRHL 223 Query: 404 SGGDVV-DQVVRPTGL----LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + ++ + + + L + A ++ +V TK Sbjct: 224 IKQVITGEAEEIYIEDSSNQIEQQMVLADDDKHKERLAVALLN-RAEYQKAIVFVNTKVR 282 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A L L + R LH DI +R ++ R G+ VLV ++ GLD+ V LV Sbjct: 283 ASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVLVATDVAARGLDIDGVDLV 342 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 L+ S + +GR R G+A+ + ++ K+I + + + Sbjct: 343 INLEM-----AHSGDEYLHRVGRTGRADQPGRAVSFVSASEWNLTKSIERYLKVSLQTIQ 397 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 K + A + + K + + + ++K Sbjct: 398 IPGLEASYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTTAGGAKKITEKVKVRERERK 455 >UniRef50_Q3J811 DEAD/DEAH box helicase-like n=2 Tax=Nitrosococcus oceani RepID=Q3J811_NITOC Length = 431 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 104/401 (25%), Gaps = 42/401 (10%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F + + L L + Q L Q Sbjct: 52 QAQTGTGKTASFLLATMQCLLREPSAGAGQQPRG---LIVAPTRELALQVSKDAQFLGQY 108 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T + G + + P L DY + V + + Sbjct: 109 T-NLKCVAVHGGANYRKQRHLLEQGCDILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADR 167 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL--APQTIYVSATPGNYELEKSGGD 407 M+ + SAT +E + Sbjct: 168 MFDL-----------------GFIRDIRYILRRLPPPDKRLGMLFSATLSLRVMELAYEY 210 Query: 408 VVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + + + + ++ LL+ ++ + +V T TK +AE Sbjct: 211 MNNPQLLRIEPQKVTVDKITERVYFPANEEKISLLLALFKRLVPRH--AIVFTNTKHVAE 268 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + YLE +G + L SD+ +R ++ + + +LV ++ GL + V+ V Sbjct: 269 KVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDRIYPILVATDVAARGLHISTVTHVFN 328 Query: 521 LDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D + + IGR AR +G A+ + + I E K ++ Sbjct: 329 YDLP-----QDPEDYVHRIGRTARAGASGLAVSFACEDYAFSLPDIEEYIG--HKVVPFS 381 Query: 580 EEHGITPQGLNKKV--VDILALGQNIAKTKAKGRGKSRPIV 618 E + A + + + Sbjct: 382 VEEEELLVPEQRVFVSHKDKKKSHRRAPHPRQKKKSFQKKE 422 >UniRef50_Q31EF0 ATP-dependent RNA helicase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EF0_THICR Length = 401 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 54/386 (13%), Positives = 101/386 (26%), Gaps = 39/386 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ E E + F + + + Sbjct: 21 YHKPTPIQAEAIPEMLLS-KDVLAGAATGTGKTAAFVLPALQFLLDDPRPSRKPRV---- 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L ++L + G+ S + P L Sbjct: 76 -LILAPTRELAFQIHKVVKQLGAHCP-FESNVVTGGFASDKQLEILQSKIDILVATPGRL 133 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + + + + + D + I + M L E Sbjct: 134 LNIMSKEFIDLSDIELLIIDEADRMLD-----------------MGQGPDVLALIEAIPG 176 Query: 386 APQTIYVSAT-PGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLS 437 Q SAT G+ + + + + + + + LL Sbjct: 177 DFQAACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLK 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 I + +V K A +L ++L+ LH D +R+E + + G+ Sbjct: 237 AIL-EDETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKI 295 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 VLV ++ GLD+ V+ V D G I IGR R G AI ++ Sbjct: 296 KVLVATDVAARGLDILNVTHVINYDVPYRG-----DIYIHRIGRTGRAQQVGIAINLVER 350 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 + + I ++ K Sbjct: 351 HDITNLQRIEYHLQQSLPVSKIKGLE 376 >UniRef50_D2Q1I3 DEAD/DEAH box helicase domain protein n=8 Tax=Actinomycetales RepID=D2Q1I3_9ACTO Length = 715 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 60/412 (14%), Positives = 109/412 (26%), Gaps = 31/412 (7%) Query: 181 YARNDQAF-------QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 Y R ++ F G V + P + + L V+RL+ Sbjct: 239 YERPERVELTERPERPVEEFVDLGPVAEGNPFSA------LGLAPRLVQRLARDGITAPF 292 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + T + + R ++ L + Sbjct: 293 PIQTATIPDALAGKDVLGRGQTGSGKTLGFGLPTLMRLAGGHTESRRPRGMILVPTRELA 352 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYR 352 +++ + L + + S L G P P D L L++ I Sbjct: 353 MQVHDALEPLAHVMGVSVKLIA--GGLPYPKQIDALRRGVDLLIATPGRLIDLCEQGAAD 410 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 L E + Q + SAT N + D V Sbjct: 411 LGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLLFSATLDNDVDTIVKTYLKDPV 470 Query: 413 VRPTGLLDPIIEV------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 T + L +E+ A+ + R ++ TK A+ + L Sbjct: 471 THSTESGQASVTTMEHHLLVIEPGHKQSLTAEL---ASRDGRTIIFVRTKLGADRVATQL 527 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G LH + R + + G VLV ++ G+ + +V LV D Sbjct: 528 RDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVATDVAARGIHVDDVGLVVQADPP-- 585 Query: 527 GFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + GR AR G + + E+ + + Sbjct: 586 ---AEHKDYLHRAGRTARAGGKGAVVTLLLPHQRRGMIRMAESAGVDTEPVR 634 >UniRef50_Q0S0C5 Possible ATP-dependent RNA helicase n=7 Tax=Corynebacterineae RepID=Q0S0C5_RHOSR Length = 632 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 48/366 (13%), Positives = 93/366 (25%), Gaps = 14/366 (3%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL--LEN 277 V+ L+ + + T+ + + + R Sbjct: 37 LVQALARNSITVPSPIQALAVPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSRHEDRPA 96 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 K L + ++++ L +G + G P D L ++V Sbjct: 97 PKRPRALVLVPTRELAFQVVDSLNSYAGAM--GLTVRPAVGGTPFSKQVDQLRRGVDILV 154 Query: 338 DESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + D L E Q + SAT Sbjct: 155 ATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQRLLFSATL 214 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + D V T + E + + + + A + R ++ Sbjct: 215 DREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEIGARDGRTIMFA 274 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK E +T+ L G LH +R ++ + G VLV ++ G+ + Sbjct: 275 RTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVAARGIHVD 334 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRR 572 + LV +D + + GR AR G + + + Sbjct: 335 GIDLVVHVDPP-----ADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAGVD 389 Query: 573 EKQQKY 578 Sbjct: 390 ATAVPV 395 >UniRef50_A8B6X3 Translation initiation factor eIF-4A, putative n=2 Tax=Giardia intestinalis RepID=A8B6X3_GIALA Length = 391 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 56/374 (14%), Positives = 124/374 (33%), Gaps = 20/374 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + + + + + I + + + Sbjct: 25 MNLHPDLLFGIFTYGYKIPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFT---IGMLQR 81 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + K + L+ + L+ + + GI + + + G Sbjct: 82 IDIGLKSPQAIILSPTRELALQTLKVV---DGIGSRLKVQVAQCIGGTQVDDDIAAAQSC 138 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L+V + + + L E L + + +F Q + V Sbjct: 139 HLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLV 198 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD------PIIEVRPVATQVDDLLSEIRQRAAIN 446 SAT LE + + D V + V +++ +I + ++ Sbjct: 199 SATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLSV- 257 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ ++ + ++L E L+ G + +HS++D ER +I+ + R G+ +L+ N++ Sbjct: 258 QQGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNII 317 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 G+D+ VSLV D R + + IGR+ R G AI + +AI Sbjct: 318 ARGIDVQNVSLVINYDIP-----REPETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQAI 372 Query: 566 GETERRREKQQKYN 579 + + + Sbjct: 373 TDKFNVTTENLPED 386 >UniRef50_A7AWJ7 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AWJ7_BABBO Length = 783 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 65/424 (15%), Positives = 114/424 (26%), Gaps = 17/424 (4%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + V + + L + Sbjct: 48 TIQRRTIPAVLQGRDVVCIARTGSGKTAAYLAP-VVQLLEGHSRTVGVRCLILLPTRELA 106 Query: 294 LEMMNELGYCSGIENY--SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ-IGGM 350 L++ + L + + GE F L + LVV Sbjct: 107 LQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQFGALTFNPDLVVATPGRLSQHIAEKS 166 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + E + QT+ VSAT + E + + Sbjct: 167 IDLTLVTHFVIDEADKLFEMGFMPDVYRILSRLPEKRQTMLVSATLPSELTEFVNFGLRN 226 Query: 411 QVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V+ I E + L + + + ER +V TK E Sbjct: 227 PVIAQVDKDMQINEQLELRFIYSRTEDKVATLCRLLRNSNDTERTIVFVSTKHHVEFFRA 286 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G V ++ +D R + + + VLV +L GLD+P V V D Sbjct: 287 LLAATGITVSAVYGSMDMTARSHQMGLFKSLKTRVLVVTDLAARGLDLPLVDCVINYDFP 346 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE-H 582 S + I +GR AR G AI + A I R+ K + Sbjct: 347 H-----SSKLFIHRVGRTARAGRQGLAISIVTMYDFAYAFEILTAIGRKMVISKEQIVGN 401 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 I G + ++ ++I + + + + N+ P + I + L Sbjct: 402 EICAIGTVGDITLLVENIKSIIQDDSDIKSLKMSMDASYNLYYKTRPNPSKNAIDRAQQL 461 Query: 643 MMQH 646 + Sbjct: 462 LKSM 465 >UniRef50_A4V6K8 Putative RNA helicase protein n=1 Tax=Dugesia japonica RepID=A4V6K8_DUGJA Length = 515 Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 47/451 (10%), Positives = 108/451 (23%), Gaps = 51/451 (11%) Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y D+ + R I + ++ FD +L Sbjct: 88 YNTWDKFSEIDDIDSRLSEILMKNGHDGMTQIQKHTFDILNRQLIDILGSAETGSGKTIA 147 Query: 241 FTIYPKTHYV-------TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + + + + L L N + L + T Sbjct: 148 YLAPLLNNIMKHYPEEMMNELKQNDEELQYPLLLVLAPTRELVNQITSVAKTLLKLTH-L 206 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 + G + + P L D + + + I + M Sbjct: 207 RSVSVIGGVDARSQINDASRGCHALIATPGRLKDLTDRGIFSLKYCNKLVIDEADRMLD- 265 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEAL--APQTIYVSATPGNYELEKSGGDVV-D 410 + + + T SAT + + + + Sbjct: 266 ----------------MGFEPQIREIINNLPSVSKRHTSMFSATFPKSVMSLASKLMKPN 309 Query: 411 QVVRPTG------------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 G ++ + + + + N++ +V K Sbjct: 310 FGEITVGKNSGTNEACIPDSIEQEFILTESDSIFRNCFDFL---QNNNKKTIVFCNKKMD 366 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 + + + + LH D+ +R + +LV ++ G+D+ ++ V Sbjct: 367 VDIFYRFSTKKNITIAKLHGDLTQRQRDYEFDLFKNNRTQILVATSVAARGIDVSDIECV 426 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM--AKAIGETERRREKQ 575 G + I +GR R GK+I + D+ PS+ + + K+ Sbjct: 427 IN-----LGLPVNLDDYIHRVGRCGRMGRPGKSITFVDQFNPSISTLNDVRRMLEKTGKK 481 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + + Sbjct: 482 VPEFMVEMNKNDRSSVDTYGSRTRNSDNHYR 512 >UniRef50_B7G0R3 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G0R3_PHATR Length = 822 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 56/415 (13%), Positives = 109/415 (26%), Gaps = 74/415 (17%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ-------AMEE 262 ++ E F V + F + T VT + Sbjct: 161 TPVQAEAFGP-VMARRDVIGRSRTGTGKTLAFGLPALTRLVTFTTENGKRDARGVMKSGR 219 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + L E ++ + +E+ + G ++ + P Sbjct: 220 KVSMIILCPTRELARQVQEELSQVARPLGLFVEVFH-GGVSYDPQSRALRQGVDVIVGTP 278 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D++ L + + + + M A +V Sbjct: 279 GRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVVL-------------KNVGSN 325 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT------GLLDPIIEVRPV------AT 430 Q + SAT ++ E D + + + + V Sbjct: 326 NPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRHLAVQLAPGADA 385 Query: 431 QVDDLLSEIRQRAAIN----------------------------------ERVLVTTLTK 456 + L I + + + +V T TK Sbjct: 386 KRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKIFGKTIVFTETK 445 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 R A++L + LH D+ +R + R G F+VLV ++ G+D+ +V Sbjct: 446 READELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVAARGIDIQDVD 505 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 LV D R + + GR R G ++L ++ I Sbjct: 506 LVIQFDPP-----RDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERDLG 555 >UniRef50_C4M986 DEAD/DEAH box helicase, putative n=3 Tax=cellular organisms RepID=C4M986_ENTHI Length = 723 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 52/354 (14%), Positives = 97/354 (27%), Gaps = 24/354 (6%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 V + L R + E T+ + E + Sbjct: 105 KDVVGKAQTGSGKTISFTLPLMERLRAENERKGKNPRVICLSPTRELAIQIAE--EFTQC 162 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYG 365 + G + L + ++V + D L E Sbjct: 163 SCGKFKVICVYGGVDIQGQINKLQSGVDVIVGTPGRVRDLFDRQFLKLDSIETIVLDEAD 222 Query: 366 FRLPSALDNRPLKFEEFEA------LAPQTIYVSATPGNYELEKSGGDVVD---QVVRPT 416 L + +F QT+ SAT + E S + D + Sbjct: 223 EMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLFSATMPAWVKEISEKYLRDDAEVIDVTV 282 Query: 417 GLLD-----PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 G + R ++++ + R +V TK D + Sbjct: 283 GNTQVPKNAKHLACRIFYQSKTQTIADLIRVYGRTGRTIVFCDTKAECTDCAIAINPI-F 341 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + LH DI +R + + R +F+VLV ++ GLD+ V L+ + + Sbjct: 342 ECQQLHGDIQQKQREQTLNGFRENKFNVLVATDVAARGLDISGVDLIIMTHVP-----KD 396 Query: 532 ERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + GR AR G I + + I + ++ ++ I Sbjct: 397 IPQYVHRAGRTARAGKEGTTITLFTRKELPQLQLIESRIKIHFQRIGTPQKAQI 450 >UniRef50_D1B8Z1 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Z1_THEAS Length = 558 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 57/413 (13%), Positives = 117/413 (28%), Gaps = 29/413 (7%) Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + A +E + + + T+ G + R ++ Sbjct: 51 KTGSGKTLAFALPLLNRMEFGERSPKVLVLSPTRELALQTAREFQWLGYDLRIR-VASLV 109 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRP 376 G L +VV + I +R D L E L + Sbjct: 110 GGMDMERQVKALREGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDEL 169 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVA 429 ++ SAT + + + + + P Sbjct: 170 EDIMAAMTQVERSWLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPAR 229 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + L + + R +V TK ++L E L + G + LH D+ ER + Sbjct: 230 RRFEGLANVLLFE--RPRRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMAL 287 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG 548 +LR G +LV ++ GLD+ VS V G + I GR R G Sbjct: 288 ENLRRGRSQILVATDVAARGLDISGVSHVIQ-----FGLPGCLETFIHRSGRTGRAGQEG 342 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYN---EEHGITPQGLNKKVVDILALGQ---N 602 + ++ + + + E +T + + ++ A G+ + Sbjct: 343 RNLILLTAREAGEFRGMIRGTSLEVEWLPAPDAEELESLTRAEIERWCLENPAEGEDYMD 402 Query: 603 IAKTKAKGRGKSRPIVEPDNVPM------DMSPKALQQKIHELEGLMMQHAQN 649 A+ + + + + +Q ++ A++ Sbjct: 403 WAEEILQREDAQLIVAGLLSRSFEGIPKGYSIQEDVQAEMARSRRADRPKARD 455 >UniRef50_C1FEE6 Dead-box ATP-dependent RNA helicase n=2 Tax=Micromonas RepID=C1FEE6_9CHLO Length = 484 Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats. Identities = 63/416 (15%), Positives = 108/416 (25%), Gaps = 36/416 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 E ++ T V I + + Q A +L Sbjct: 79 LCENITSMGIATATPVQRGCIPAILAGRDVI----GVAQTGTGKTAAFALPILQILGREP 134 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 T+ ++E R + GE T L + V Sbjct: 135 YGIFCLCLTPTRELASQISEQFIAFSAGMTLRCETVF-GGENIRTQAKALMLRPHIAVAT 193 Query: 340 SHVTIPQ-------IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-APQTIY 391 + R L E L + QT+ Sbjct: 194 PGRLMDHFLHCSAVAKCFEN---VRCLVLDEADRLLDPGFEAELQAIMHNLPSANRQTLM 250 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAA 444 SAT + ++ + + L+ +++ Sbjct: 251 FSATITKSISAVQELALGKALLFEALKDTQLAGRCKEEYCFIAPRVKEVYLVHILKRAPT 310 Query: 445 INER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 R ++V T R + L E L G LH+ R + + GE +++ Sbjct: 311 WGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHAAKKQARRHASLSRFKSGEIQIMIAT 370 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+P V +V D R I IGR AR G+AI + S+ Sbjct: 371 DIASRGLDIPTVDMVVNYDVPLI-----PRDYIHRIGRTARAGRVGRAITLVTQHDISLV 425 Query: 563 KAIGETERRREKQQKYNEEHGITPQ------GLNKKVVDILALGQNIAKTKAKGRG 612 I + R+ + E I +++ A G + K Sbjct: 426 HQIEQLTCRKLVELSKLSEEAILKDMAQVFAARRIANLNMGAAGGFNEILRQKRSK 481 >UniRef50_UPI0001C318E3 DEAD/DEAH box helicase domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318E3 Length = 460 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 94/370 (25%), Gaps = 43/370 (11%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ EL +V + F + +R L Sbjct: 26 AFPIQ-ELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLMDRIEATDKR--------PSALV 76 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + E + + + G + + S P L D Sbjct: 77 LAPTRELALQIVDETREI-AHARALSITAVYGGVGLERQARNAARS-HILVATPGRLEDL 134 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + + + + + M + + Q Sbjct: 135 LQRRAFTLANVKLLILDEADRMLD-----------------MGFRPAVDRIVKATNANRQ 177 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT + D +D ++D L+ E+R Sbjct: 178 TMLFSATLKGEVDRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEHKLDHLVQELRH 237 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 LV TKR A+ L + L +H D +R + GE DVLV Sbjct: 238 HGR--GLTLVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLV 295 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ VS V DA + IGR R G + + Sbjct: 296 ATDVAARGIDVNGVSHVINFDAP-----EDREGYVHRIGRTGRAGATGIGVTFVMADQAK 350 Query: 561 MAKAIGETER 570 I Sbjct: 351 DMGKIAVELG 360 >UniRef50_A4RSU9 Ddx49-related DEAD box helicase superfamily II protein n=2 Tax=Ostreococcus RepID=A4RSU9_OSTLU Length = 417 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 58/422 (13%), Positives = 112/422 (26%), Gaps = 26/422 (6%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 ++ L + + V I + + Sbjct: 6 KLGLSGVLLRNIRQLGFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPVVHVLS 65 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + L+ + ++ + S S GE L Sbjct: 66 ---VDPHGVFALCLSPTRELAYQIAEQFAVFSVGM--SLRCEVVIGGEDLLRQASSLSKR 120 Query: 333 GLLVVDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +VV + + R + L E L S+ + Q Sbjct: 121 PHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKRQ 180 Query: 389 TIYVSATPGNYELEK-------SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 T+ SAT + + + P + L+ +R+ Sbjct: 181 TLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVHVLRE 240 Query: 442 RAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + R ++ T + E ++ L G LH+ +R + + +L Sbjct: 241 LVSSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTMVKIL 300 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 V ++ GLD+P+V LV D R I IGR AR G+AI + Sbjct: 301 VATDVAARGLDLPDVELVVNYDIP-----SDPRQYIHRIGRTARFHATGQAISLVTQYDV 355 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQG---LNKKVVDILALGQNIAKTKAKGRGKSRP 616 K I + ++ E G ++K+ + + + K + Sbjct: 356 GKIKKIEKHLGHELEEFHVQEADVNKLVGEVFASRKMAKLHMASPGGFDEQLSAKKKRQS 415 Query: 617 IV 618 Sbjct: 416 AK 417 >UniRef50_B8CF86 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CF86_THAPS Length = 387 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 58/425 (13%), Positives = 114/425 (26%), Gaps = 72/425 (16%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 +++ +A+ Y S + + + D + Sbjct: 1 PPELIKAIAKSGYDSPTIVQ------------------SQTLPVALSGNDALI------- 35 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + H + E + + + L + + Sbjct: 36 -TAATGSGKTLSYIWPMIIHIMDQPEIMPG--VDGPIGIVLIPTRELAKQVYKYAKLFME 92 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + ++ + P L D + G + + V + + Sbjct: 93 ACGGKVCEVSGGNRGTWELTKELKKGCEIIVSTPGRLIDMVKKKGTNLQRVTFVVLDEAD 152 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 L + + E QT+ +SAT G + + Sbjct: 153 R-----------------MLDMGFEKQVSSILENVRPQRQTLLLSATFGKRVERVARSWL 195 Query: 409 VDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + V G +D + P L E+ + R LV T+ + Sbjct: 196 KNPVRIAIGRTGASSEHVDQHVMCLPSREAKIQWLVEMLPVLSPLGRCLVFVATRADCDL 255 Query: 462 LTEYLEE-------HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 L+E + V +H D D +R I + +L+ ++ GLD+P+ Sbjct: 256 LSEKVTNSQALVGNDNSTVVSIHGDKDQRDRNSAIYQFKKNSQAILIATDVAARGLDIPD 315 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAAR--------NVNGKAILYGDKITPSMAKAIG 566 V V DA ++ S + IGRA R + G A A+++ Sbjct: 316 VMTVINFDA-----AKNIDSHVHRIGRAGRMSKEDSGQHQRGVAYTLMTDGNADFAQSLV 370 Query: 567 ETERR 571 E R Sbjct: 371 EAFER 375 >UniRef50_B5JHQ1 DEAD/DEAH box helicase domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHQ1_9BACT Length = 406 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 49/379 (12%), Positives = 104/379 (27%), Gaps = 41/379 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ ++ F F + ++ + L Sbjct: 59 EPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLPLLQRI--------DPTQKRVQAL 110 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + T+ T G + + + P L D Sbjct: 111 VLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEGQIAALSRTTHIVVATPGRLID 170 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + + + + + M + K EF A Sbjct: 171 LLKVKAVDLSTIDTLVLDEADEML-----------------SMGFQDELNKILEFTRGAK 213 Query: 388 QTIYVSATPGNYELEKSGGDV-VDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEI 439 +T SAT + D ++ V + + D++ I Sbjct: 214 RTWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPDEIARFI 273 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + A R +V +K +++ L E G V L D+ +R +++R R +V Sbjct: 274 K--AQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERSEV 331 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV ++ G+D+ ++ V GR AR G ++ + + Sbjct: 332 LVSTDVSARGIDVEGLAYVVH-----HQLPDQIEYYTHRSGRTARAGRKGISMAFITRGD 386 Query: 559 PSMAKAIGETERRREKQQK 577 + + + ++ K Sbjct: 387 VKRIRELQTELHIKFREIK 405 >UniRef50_Q8I457 ATP-dependent helicase, putative n=8 Tax=Plasmodium RepID=Q8I457_PLAF7 Length = 755 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 107/375 (28%), Gaps = 24/375 (6%) Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + T+ + + + Y+ + GE + L ++ Sbjct: 258 PSILVLEPTRELSKQVENTFKEI-SQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPG 316 Query: 342 VTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-LAPQTIYVSATPGNY 399 I I + L E L + + Q + SAT ++ Sbjct: 317 RIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLLYSATTPSW 376 Query: 400 ELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVL 450 + S + + + I P + LL +I + +V+ Sbjct: 377 IKDISSKYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVI 436 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + T TK A+ L LH +I R ++ R G F +L+ ++ GL Sbjct: 437 IFTRTKLEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGL 496 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETE 569 D+ V LV I GR R G +++ I + Sbjct: 497 DISNVDLVIQCFPPNY-----SAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNC 551 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA------KTKAKGRGKSRPIVEPDNV 623 + + + + + + I + + S I + + + Sbjct: 552 GIKFNMETLPNNEQVFHCASAIASKKVENVNKEILPFFHDTAKELINKSNSLKIDQIELI 611 Query: 624 PMDMSPKALQQKIHE 638 ++ A ++ I + Sbjct: 612 SRCLAIIAKKEHIKK 626 >UniRef50_C0LEJ8 ATP dependent RNA helicase Hel61p (Fragment) n=3 Tax=Trypanosomatidae RepID=C0LEJ8_LEITA Length = 545 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 44/385 (11%), Positives = 99/385 (25%), Gaps = 62/385 (16%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L + + + + N Sbjct: 106 EGLRTLKYPSTTDIQKFTIPLLAEGHDAIGLAPTGSGKTVAFA---VPALAGFKPNPDGT 162 Query: 282 EEQRLTQRTQFDLEMM----------------NELGYCSGIENYSRFLSGRGPGEPPPTL 325 + T+ ++ G ++ P L Sbjct: 163 PSVLVLAPTRELVQQTTKVFQNLGCGQVRVCEAYGGAPRDLQARRLRNGCDVLVACPGRL 222 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L + + + S + + + + + Sbjct: 223 KDFLDGGEVSLRNLSFLVFDEADRLLD-----------------MGFQVHLDEIMAYLDS 265 Query: 386 --APQTIYVSATPGNYELEKSGGDVVDQ-VVRPTGL----------LDPIIEVRPVATQV 432 PQT+ SAT E + D V+ G + + T+ Sbjct: 266 ASHPQTMMWSATWPESVQEMVRKYLSDDRVLIRAGTAGAGLQVNEHIKQELIFCRTFTER 325 Query: 433 DDLLSEIRQ---RAAINERVLVTTLTKRMAEDLTEYLE-EHGER---VRYLHSDIDTVER 485 + L + + ++++++ + E+ G V +H + +R Sbjct: 326 IEKLGLLVEDGTIDDNSDKLIIFVERQADTENTARAFSHRLGIDTRYVGAIHGGLSQRQR 385 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ + + +LV ++ GLD+P+V+ V A ++ S IGR R Sbjct: 386 DRVMSMFKNNQIRLLVATDVASRGLDIPDVTCVVNFQAP-----KTIDSYCHRIGRTGRA 440 Query: 546 VN-GKAILYGDKITPSMAKAIGETE 569 G A + + +A + Sbjct: 441 GRTGTAYTFLSEEDGGLATELVNYL 465 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 99/677 (14%), Positives = 212/677 (31%), Gaps = 85/677 (12%) Query: 16 DQPEAIRRLEEGLEDGLAHQ--------TLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + L E +L G+ G + +++ +++ N+ Sbjct: 3 NNESIYSELIERFSKSEEFLNFDIKTVKSLTGLKGGSDSLFFSSLFNK-NESILIIKENE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 + A L + + P Y P DT S I Q R++ Sbjct: 62 SDAMLLSQSLNFY---------------NIPNYYFPDYDTVPFTKMSPVSDIAQDRINIL 106 Query: 128 KAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ + +++ +V+A+ D K+ +HL VG +D + L +L Y + Sbjct: 107 YKLINKEKCIIITTVNAVTRKLPNRDDLKKLPIHLNVGDKLDLDNLRLTLYDLGYVIERE 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 ++GT VRG ++D+F E + +R+ELFD+E+E + LF+ G+ ++ IYP Sbjct: 167 VAEKGTASVRGSIVDVFSVEYN-NPIRIELFDDEIESIRLFNIEDGRSFKSVENIIIYPV 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL--GYCS 304 + + + + + E + ++ E L + + + GY Sbjct: 226 RETIYSDSAVSEFINNNEIEDELKDNIIKRKYFAGSENLLPIFYKDLETIFDYFDYGYIF 285 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-----QIGGMYRGDRARKE 359 + + F+ + ++ D + I +I Sbjct: 286 TDDALKLKNKFITIIDTIKENFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAINISPFIT 345 Query: 360 TLVEYGFRLPSA--LDNRPLKFEEFEALAPQT---IYVSATPGNYELEKSGGDVVD--QV 412 + Y F +R F ++ + I +S + L + D Sbjct: 346 DIDIYKFHFEEGISFKSRLTDFLDYVKEYREKDYLIILSTGHNDQALRF-YKIMQDLSPT 404 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 + ++ +++ D+ EI N+ + E + E Sbjct: 405 IITENDIEDTEDIKDKEENSDNK--EINNDIKENDD-----NNEDNKEIILE-------- 449 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 DT ++ EI +D E + + G ++ + I D + G R + Sbjct: 450 --------DTNKKEEIKKDYSKNENNFYIITAQSSSGFIKDDIKTIFIADWEVFGRKRKK 501 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 I + + D A + + + G K Sbjct: 502 VRKIPKV------NKNLIETFVDLNVGDYAVHVNYGIGKYLGLTRKMS------NGKEKD 549 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 + + + P+ + + V +S K+ +L G ++ Sbjct: 550 YITLEYAKGDKL---------YIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAR 600 Query: 653 EEAAQIRDQLHQLRELF 669 E+A +L +L + Sbjct: 601 EDALATARELIKLYAIR 617 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 58/438 (13%), Positives = 130/438 (29%), Gaps = 35/438 (7%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F+ D L + V + + A Sbjct: 633 DDFEASFRYEETVDQLRAINDIKEDMESGKMMDRLVCGDVGFGKTEVAFRAVFKAIMAGK 692 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 Q + + IE +RF++ + + L Sbjct: 693 QCAILCPTTILSQQHYNNAKKRFEDF--PIKIEVLNRFVTS----KQAKRNKELLKEGSC 746 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ +H+ + + + E + + + L + +SA Sbjct: 747 DLIVGTHMLLSKDIEFKNLGLI---VIDE-----EQRFGVKHKEALKKLRLETDVLTLSA 798 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTT 453 TP L + + D + T L+ I V D +++ I + +V Sbjct: 799 TPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKREGQVFYLY 858 Query: 454 LTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E +++ + H + + +I+ D ++D+LV ++ G+D Sbjct: 859 NRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGID 918 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 +P + + I +A+K G L Q GR R+ A+ E + Sbjct: 919 IPNANTILIDNANKLGLSE----LYQLRGRVGRSDREAYAYMFYPSDL----ALTEVAYK 970 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + + + G G + D+ G K + + V ++ + Sbjct: 971 RLEAISEHTDLG---AGFKIAMRDLEIRGAGNILGKEQSGMIYQ-------VGYELYTQM 1020 Query: 632 LQQKIHELEGLMMQHAQN 649 L++ +E +G + + + Sbjct: 1021 LEEAANEYKGEIKEVTFD 1038 >UniRef50_A4H460 Nucleolar RNA helicase II, putative n=7 Tax=Trypanosomatidae RepID=A4H460_LEIBR Length = 689 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 54/397 (13%), Positives = 99/397 (24%), Gaps = 31/397 (7%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ F + R + F I + + + + Sbjct: 110 FPVQALTF-NAIMRNADVLVQARTGSGKTLAFGIPIVERLL--KLQSHLTRGRGPAAVIF 166 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L ++ + G + P D+L Sbjct: 167 CPTRELAIQVQDVLCGISCG---LIVTALYGGVAYANQERVLRSGVDIVVATPGRAKDFL 223 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 L + + M L+ + E QT Sbjct: 224 EKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGST-------SAEKTVHQT 276 Query: 390 IYVSATPGNYE---------LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + SAT + E + V + + L I+ Sbjct: 277 LLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVR-TASTIKFYRRKCNFSEISSMLADLIK 335 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + R LV T TK+ DL+ + + LH D+ +R ++ R +F VL Sbjct: 336 VYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFRDNKFSVL 393 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 + ++ GLD+P V LV + I GR R G +L Sbjct: 394 IATDVAARGLDLPMVDLVIQCAPP-----SDIDAFIHRAGRTGRAGRKGVCVLLYQPREE 448 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + + I + + I D+ Sbjct: 449 YVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDL 485 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 104/692 (15%), Positives = 197/692 (28%), Gaps = 121/692 (17%) Query: 28 LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 + + GS +A A P +++A N A +L E+ F P+ V Sbjct: 40 FSSKHSRPRYSNLQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVH 98 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--------------- 132 +P +T S ++ + RL+ + Sbjct: 99 L-------------LPDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPA 145 Query: 133 -------------RRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAE 178 V+V ++ P L G +D A +++ Sbjct: 146 SGRGSERENQSSTSACDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTL 205 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y Q G + VRG +ID+F S + R++LFD+E+E ++ FD T + + + Sbjct: 206 AGYNHVQQVLTPGEYCVRGGIIDLFAMGS-VLPYRIDLFDDEIETIATFDVDTQRTLYPV 264 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P + P + + + ++ + ++ Sbjct: 265 PEIRLLPAREFPLDEKGQATFRQNFRDRFEGDPSKSR-----------------IYKDVS 307 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + +GIE Y + TLFDYLP + + H + + D A + Sbjct: 308 KGIAPAGIEYYLPLFFDQT-----ATLFDYLP--KIATLCLHHNV-DEAITSFGKDAASR 359 Query: 359 ETLVEYG------FRLPSALDNRPLKFEEFEALAPQTIYVSATPG--------NYELEKS 404 L+ LD E I SA S Sbjct: 360 YNLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLPEGEGNLSSLS 419 Query: 405 -------GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 D + T + PI R +R A RVL+ + Sbjct: 420 PGEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYA---GRVLLLAESLG 476 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E ++ YL+E+G E G+ ++G+ ++ G +P+ L Sbjct: 477 RREIMSGYLKEYGLTPAVC----------EDYASFLAGQDKFMLGVGPVQIGFSLPDEQL 526 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + + + RAAR N + S K + + Sbjct: 527 AIVTETELYAAQPRS-----RANRAARKSNVEG----MLRDLSELKPGDPVVHEQHGIAR 577 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 Y + + + + G++ P+ + + A +H Sbjct: 578 YRGLVNLDLGEGENEFLLLEYAGEDKL---------YVPVSQLHVISRYSGGAAEAAPLH 628 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 +L A+ ++ +L + Sbjct: 629 KLGSGAWDKAKRRAMQQVRDTAAELLNIYAQR 660 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/436 (14%), Positives = 121/436 (27%), Gaps = 41/436 (9%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E F D + + P + + ++ A + Sbjct: 676 EAFAAGFGFEETADQAAAIEAVLLDLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGK 735 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q Q + LS + L L Sbjct: 736 QVAVLVPTTLLAEQHFQNFSTRFAD------WPIRIAELSRFRSAKEVTQALKDLADGKL 789 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 +V +H I + + L E + + + + ++A Sbjct: 790 DIVIGTHKLIQKDVKFHNLGLV---ILDEEHR-----FGVQQKEKLKALRAEVDVLTLTA 841 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTT 453 TP L S + D V T + V+ + + + +V Sbjct: 842 TPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREAVLRELKRGGQVYFLH 901 Query: 454 LTKRMA----EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 E L L E RV H + + ++RD F+VL+ ++ G Sbjct: 902 NEVDTIANMLEKLETLLPEARIRVA--HGQMGERDLEAVMRDFHHQRFNVLLCSTIIETG 959 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-AILYGDKITPSMAKAIGET 568 +D+P + + + AD+ G + L Q GR R+ + A L D + + Sbjct: 960 IDVPTANTIIMNRADRFGLAQ----LHQLRGRVGRSHHQAYAYLLVDSMDG-----LTAQ 1010 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 ++R + + E+ G G + D+ G +++ E + + Sbjct: 1011 AKKRLEAIQAMEQLG---SGFFLAMHDLEIRGAGEVLGESQSG-------EMQEIGFSLY 1060 Query: 629 PKALQQKIHELEGLMM 644 L I L+ Sbjct: 1061 NDMLAAAIASLKQGKE 1076 >UniRef50_D2UYJ4 ATP-dependent dead box RNA helicase n=1 Tax=Naegleria gruberi RepID=D2UYJ4_NAEGR Length = 892 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 47/366 (12%), Positives = 101/366 (27%), Gaps = 15/366 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L ++++ + I + L R Sbjct: 45 LSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERLDYKH 104 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + L++ + G + G+ F+ L A+ + Sbjct: 105 SSIVGARAVIIVPTRELVLQVNKVIYDFIGKTS-DLKTCMLFGGKSMEGQFERLSANPDI 163 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ + I R E L + + QT+ SA Sbjct: 164 IIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTLLFSA 223 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINE 447 T + E S + + + + +V LL + + E Sbjct: 224 TLPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNSVISHRE 283 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ T+ AE + ++ +D RME + R GE ++L+ ++ Sbjct: 284 TTIIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILLVTDVAA 343 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+P+V+ V + + + +GR R G A + Sbjct: 344 RGIDIPDVNNVINYNFP-----GKPKLFVHRVGRVGRAGKVGTAYSLIAPDEVPFFLDLE 398 Query: 567 ETERRR 572 R+ Sbjct: 399 LFLGRK 404 >UniRef50_Q95XM9 Putative uncharacterized protein n=2 Tax=Caenorhabditis RepID=Q95XM9_CAEEL Length = 763 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 60/485 (12%), Positives = 132/485 (27%), Gaps = 33/485 (6%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 SD ++ + F + + + Sbjct: 168 YSDPTPIQQACIPVAL-TGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRV---- 222 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + R + G + + P L Sbjct: 223 -LVLVPTRELAIQ-VFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL 280 Query: 326 FDYLPA-------DGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPSALDNRPL 377 D+L + + ++ + + + L E L A ++ Sbjct: 281 IDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLDEADRMLEEAFRDQMN 340 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--------GLLDPIIEVRPVA 429 + A QT+ SAT E + + V L I +R Sbjct: 341 ELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGR 400 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + +V TK+ + + L G +V + S + +R+E + Sbjct: 401 ETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESL 460 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + E DVLV +L GLD+ V V ++ +S + I +GR AR G Sbjct: 461 SKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMP-----KSIKQYIHRVGRTARAGKAG 515 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++I + + K I + R +Q+ + ++ + Sbjct: 516 RSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAE 575 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 K + + +++ + ++ ++ + + ++ Sbjct: 576 KELRIAEASMAKTQNALEVGENGGAPAERRV----WMMKESQIEKQRKREEKRQMKVDAR 631 Query: 669 FIAAS 673 A + Sbjct: 632 KKAEA 636 >UniRef50_B0CPI0 Predicted protein n=2 Tax=Agaricales RepID=B0CPI0_LACBS Length = 439 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 47/378 (12%), Positives = 104/378 (27%), Gaps = 56/378 (14%) Query: 193 FRVRGEVIDIFPAES---DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 F +++ + + + ++ + +E + + T F I + Sbjct: 10 FAQLNVPVELQSSFAGFKEPTPIQACTWPPALEGRDVTNISTN--SGKTLAFGIPALSRL 67 Query: 250 VTPRERIVQAMEEIKE-ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + L L L + + G + Sbjct: 68 IKSISKSSSKSGNSTISILVLAPTRELALQTHDTLAALGKPFG-IASVAVFGGVPKDPQV 126 Query: 309 YSRF--------LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 ++ R P + D + + ++ + + Sbjct: 127 KMLKNASKAKDGMTTRIIVGTPGRILDLMQEGVCDLSGVDYLVLDEA------------- 173 Query: 361 LVEYGFRLPSALDNRPLKFEEFEAL--APQTIYVSATPGNYELEKSGGDVVDQVVRPTG- 417 L +N QT+ SAT + + V G Sbjct: 174 ----DRMLDKGFENDIRNIISSTKPTAERQTMMFSATWPEAVRRLASTFQTNPVRVTVGS 229 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAI---------NERVLVTTLTKRMAED 461 ++ + V + D L + Q+ + + +L+ L K+ A Sbjct: 230 DDLTANSRVEQSVAVFDDSRSKDQRLLALLQKLSHKKTSTKGASDSLILIFALYKKEASR 289 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + + L+ +G V LH D+ R+E + + + G ++V ++ GLD+P V V Sbjct: 290 VEQMLKYNGYSVGALHGDMSQPARLETLENFKNGTTGLMVATDVAARGLDIPNVGAVINY 349 Query: 522 DADKEGFLRSERSLIQTI 539 + I I Sbjct: 350 TFPL-----TIEDYIHRI 362 >UniRef50_D0L6I3 DEAD/DEAH box helicase domain protein n=5 Tax=Actinobacteridae RepID=D0L6I3_GORB4 Length = 491 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 45/376 (11%), Positives = 97/376 (25%), Gaps = 31/376 (8%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++ + + +E + F+I Sbjct: 23 TEAFPIQQDTLGDTLEGKDVLG-RGKTGSGKTLAFSIPLVAGLAEMEV---PRKPGAPTG 78 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + L + G + + P L Sbjct: 79 LVLAPTRELATQIARVVEPLAEAVG-LRVTTVFGGVKQTRQEQAFRRGVDIVVACPGRLD 137 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D + + + D I + M + Sbjct: 138 DLMRQGIVTLDDVEITVIDEADHMADLG-----------------FLPVVTRILAATPAD 180 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRA 443 Q + SAT N + + + + + + + D + I + A Sbjct: 181 GQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVFEVSPSDKAALITELA 240 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + R ++ TK A+ L L E G LH ++ +R + G+ VLV Sbjct: 241 SGAGRRILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGDVRVLVAT 300 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ G+ + ++ LV +D ++ + GR AR + G + Sbjct: 301 DVAARGVHVDDIELVVHVDPPN-----EHKAYLHRSGRTARAGSAGDVVTVCLPDQRRDV 355 Query: 563 KAIGETERRREKQQKY 578 ++ + Sbjct: 356 ASLLRKAKISVAPMPV 371 >UniRef50_O96264 DEAD/DEAH box helicase, putative n=9 Tax=Eukaryota RepID=O96264_PLAF7 Length = 562 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 47/375 (12%), Positives = 108/375 (28%), Gaps = 19/375 (5%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 I P + + L+ NK + T+ +++ Sbjct: 186 ILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQ 245 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKET 360 G+ N + G T L ++V + + + + Sbjct: 246 ALGM-NLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLV 304 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 E L ++ K T SAT + + + V Sbjct: 305 FDEADKLLSQDFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKY 364 Query: 421 PII-----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + + + +++ T T A+ L + G + Sbjct: 365 STVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSIC 424 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH + +R+ + ++ ++++L+ + GLD+ ++ +V D S + Sbjct: 425 LHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDI------CSCKEY 478 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN---- 590 I +GR AR GK+I + + AI + ++ + +E+ + Sbjct: 479 IHRVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEA 538 Query: 591 KKVVDILALGQNIAK 605 ++ +I Sbjct: 539 LRLSEIEMKENQELY 553 >UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT4_9PLAT Length = 548 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 67/421 (15%), Positives = 122/421 (28%), Gaps = 66/421 (15%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + + + + ++ + N Sbjct: 143 GKYDLMASSQTGSGKTLAYVLPIVNRILNSYPKLAMNTLAKS-----------DLNIQCP 191 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + T+ ++ + + R + G+ L ++ Sbjct: 192 SALVLVPTRELVQQILLEFNKMLYRCFPRAVGV-YGGQNRSRQIHELSKGCHFMIATPGR 250 Query: 343 TIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE----------ALAPQTIY 391 I + M R D L E L +++ K L QT+ Sbjct: 251 LIDFLDEGMLRMDHCHSVVLDEADRMLDMGFEHQIRKILSNPDYGMPQPSGDGLPRQTVL 310 Query: 392 VSATPGNYELEKSGGDVV--------------DQVV-------------------RPTGL 418 SAT L+ + D VV P + Sbjct: 311 FSATFPPSVLQIGRSFLRGNRCISFSVKQSEDDPVVPAWGEALAPTHGSKKIIGQIPEKI 370 Query: 419 LDP--IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + I+E ++V +L+E+ Q +E +LV TKRM E L +L + G + L Sbjct: 371 VQKMKIVEKFDWKSEVQKILNELLQDKDEDESILVFCNTKRMVELLEFHLYKSGLKCGRL 430 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H + R +R LR G +VLV ++ GLD+P + V G + I Sbjct: 431 HGGMGQTNRDRSLRLLRDGRINVLVATSVAARGLDIPAIGAVVN-----VGLPTNLDDYI 485 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREK--QQKYNEEHGITPQGLNKKV 593 +GR R G A+ + + + R+ Q + E Q + + Sbjct: 486 HRVGRTGRFGQCGLALTCVFSDSIHGQRELIHDIRQVAGKYAQDFPTELTAPKQSRRRAI 545 Query: 594 V 594 + Sbjct: 546 L 546 >UniRef50_Q00W64 Putative HLA-B associated transcript 1 (ISS) n=2 Tax=Viridiplantae RepID=Q00W64_OSTTA Length = 543 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 46/402 (11%), Positives = 100/402 (24%), Gaps = 67/402 (16%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 +LR + + + + E + + + + Sbjct: 69 ELLRAIVDCGFEHPSEVQH-------------------------ECIPQAILGMDVL-CQ 102 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I + + L E +R + Sbjct: 103 AKSGMGKTAVFVITVLQQL--------EPTHGEVGAVILCNTRELAYQISHEFERFSTFL 154 Query: 291 QFDLEMMNELGYCSGIENYSRFLSG-RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + G + L+ P L L + +H + + Sbjct: 155 GDVTTAVVFGGIPINQQREQLKLNPPNIVVGTPGRLKALANDGTLNLKKCAHFVLDECDK 214 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M L + + + Q + +AT + Sbjct: 215 MLEE--------------LDMR--SDVQEIFKATPHDKQVMMFTATLSKELRALCKKFMN 258 Query: 410 DQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D + A + L + +V++ + + Sbjct: 259 DPMEIFVDDETKLTLHGLVQHYVKLEEAEKNRKLNDLLDSLM--FNQVVIFVSSVSRCKA 316 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L E +H D+ ER+ + + G+ +LV +L+ G+D+ V++V Sbjct: 317 LDRLLRECNFPSIGIHGDMKQEERLACYKSFKDGDKRILVATDLVARGIDIERVNIVINY 376 Query: 522 DADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMA 562 D S + + +GRA R G A+ + + Sbjct: 377 DMP-----SSADTYLHRVGRAGRFGTKGLAVTFVASSEDTDV 413 >UniRef50_Q54DV7 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54DV7_DICDI Length = 777 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 58/484 (11%), Positives = 132/484 (27%), Gaps = 64/484 (13%) Query: 146 YGLGDPDLYLKMMLHLTV-------GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 + + +M + + G I + I + D F G Sbjct: 251 MKQLTSEDHREMRIKIKANVSTSFDGQEIPRPIIT-------FEDQDLPLSMKKF--IGF 301 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY----PKTHYVTPRE 254 + +P+ + ++ + + + + + + H + Sbjct: 302 LTTKYPSITAPTPVQSQCWPG-ILSGQDILSIAQTGSGKTLGYLLPAIPNILEHLRQRKI 360 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 R Q + K E + K+L N + + ++ E ++ Sbjct: 361 RRQQMTMQEKLENKKKSKLLKNTNMGPMVLIIVPTRELAKQV--ESSCKPLRSKFNIHSI 418 Query: 315 GRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYR----GDRARKETLVEYGFRLP 369 G D L +++ + I L E L Sbjct: 419 AIYGGVDANEQKDILGQEHNEIIIATPGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQ 478 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG------------ 417 ++ K E QT+ SAT + + + + + Sbjct: 479 LGFGDQLQKISEQIRPDRQTLMFSATFPQTMQDAAKKWLTNPLKIRVKSSSTNQGSTSII 538 Query: 418 --LLDPIIEVRPVATQVDDLLSEIRQRAA------INERVLVTTLTKRMA-------EDL 462 + +++ + L + I +L+ T + E + Sbjct: 539 SKNVKQVVKPIAEKEKSKYLTTFINSIMKKELLLRNRSLILIFVNTIKSVKPILTVIEKM 598 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM-PEVSLVAIL 521 + E + +H D+ ER +I + + G+ +LV ++L G+ + + V Sbjct: 599 CDQFRERKYKCGAIHGDMKQFERDSVIDNFKSGKISILVATDILGRGIHIGGNLRFVINY 658 Query: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG--DKITPSMAKAIGETERRREKQQKY 578 D S + +GR R G A+ MA+ + + ++Q Sbjct: 659 DFP-----SSLEQYVHRVGRTGRQGNKGHALTLFTDTPQNTPMARGLIKILEECKQQISP 713 Query: 579 NEEH 582 + Sbjct: 714 DLIK 717 >UniRef50_B0T8G9 DEAD/DEAH box helicase domain protein n=52 Tax=Alphaproteobacteria RepID=B0T8G9_CAUSK Length = 776 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 51/362 (14%), Positives = 104/362 (28%), Gaps = 35/362 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + ++E F + T + E+ + + Sbjct: 19 YLEPTPVQAAVLEDEAIG-RDLLVSAQTGSGKTVAFGLAAATTLLGDAEKFAK--AGLPM 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E L + + G + E + P L Sbjct: 76 CLVIAPTRELAIQVNRELAWLYADAG-AVVVNCVGGMDARREQRALNFGAHIVVGTPGRL 134 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ L + + + + M + Sbjct: 135 RDHIERGHLDLSELKVAVLDEADEMLD-----------------MGFREDLEFILDAAPS 177 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRP-TGLLDPIIEVRPVATQ------VDDLLSE 438 +T+ SAT ++ + D + G +P ++ A + +++ Sbjct: 178 ERRTLLFSATLAREIVQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVEHAVVNL 237 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +R + LV T+ L L E G V L ++ ER + ++ LR G Sbjct: 238 LRYFESPG--ALVFCNTRESVRALHSKLRERGFAVVGLSGELSQRERADALQALRDGHAR 295 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 V V ++ GLD+P++ LV + ++ +L+ GR R T Sbjct: 296 VCVATDVAARGLDLPDLGLVIHAELPV-----NKATLLHRSGRTGRAGKKGVSALVVPYT 350 Query: 559 PS 560 Sbjct: 351 RR 352 >UniRef50_Q6KI10 DEAD-box ATP-dependent RNA helicase n=1 Tax=Mycoplasma mobile RepID=Q6KI10_MYCMO Length = 557 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 54/382 (14%), Positives = 118/382 (30%), Gaps = 15/382 (3%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TPRERIVQAMEEIKEELAARRK 272 +++ D+ + L + + T + + + + + K Sbjct: 6 LDIDDKIINNLKKIGFEAPTQIQELVISTANKNQNILGCAQTGTGKTAAFGVSIINKILK 65 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 N K + T+ +NE L+ G + F Sbjct: 66 NKKNNAKSSLTTLILVPTRELSVQVNENIKLFSSNLPITSLAIYGGMRNRESHFSIFKRG 125 Query: 333 GLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + I G + L E + + + + Q + Sbjct: 126 LDIIVATPGRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEILKRTKEEKQVML 185 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVR---PVATQVDDLLSEIRQRAAI 445 SAT + + + T IE +++ +LL ++ + Sbjct: 186 FSATMPKAIMNLVEDFMGKFELIQTESFAKPLQNIEHLAYFYTSSKPVELLQQMLKE-EK 244 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V TKR A+++ L + ++ LH D R I+R + G+ +LV ++ Sbjct: 245 IYSAIVFVKTKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQILVATDV 304 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 G+D+ ++S V L+ +GR R GKAI + K + Sbjct: 305 ASRGIDIDDISHVFNLNIP-----EDPEIYTHRVGRTGRASKVGKAISFFSKRDFFLLAK 359 Query: 565 IGETERRREKQQKYNEEHGITP 586 + + + +++ + Sbjct: 360 VEKEIKMEIPKKQIQIIEDVIE 381 >UniRef50_Q4PDT1 ATP-dependent RNA helicase DBP3 n=2 Tax=Ustilaginomycotina RepID=DBP3_USTMA Length = 585 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 109/393 (27%), Gaps = 45/393 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP----RERIVQAME 261 S ++ + ++ + F + H VT +A Sbjct: 179 FSTPTPIQACCWPVLLQNKDVVGIAE-TGSGKTFAFGLPALQHLVTKHKVLDSGKKKAKG 237 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG--RGPG 319 L L +L + + G + S R Sbjct: 238 AQVNVLVIAPTRELAIQTEENMAKLGKSMG-IGMICLYGGVSKQEQVRLLNQSPPVRIVV 296 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P + D L + +++ + + L + Sbjct: 297 GTPGRVLDMARDGSLDLSGVTYLVLDEA-----------------DRMLDKGFEPDIRAI 339 Query: 380 E---EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPV 428 + T SAT + + V G ++ +EV Sbjct: 340 IGMCKSREEGRHTSMFSATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEVLAD 399 Query: 429 -ATQVDDLLSEIR--QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + L +R +++L+ L K+ A+ + + L G +V +H D+ ER Sbjct: 400 GYAKERRLNDFLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRGGFKVSGIHGDLGQNER 459 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAAR 544 + + + E +LV ++ GLD+P V V + + I Sbjct: 460 IASLERFKSAETPLLVATDVAARGLDIPNVEHVVNYTFPL-----TIEDYVHRIGRTGRG 514 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 GK++ + ++ + A + + +++ Sbjct: 515 GKTGKSLTFFTEMDKAHAGELIRVLKDADQKVP 547 >UniRef50_C4K3R7 ATP-dependent RNA helicase n=4 Tax=Enterobacteriaceae RepID=C4K3R7_HAMD5 Length = 454 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 59/440 (13%), Positives = 112/440 (25%), Gaps = 43/440 (9%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 F I H + + L L Sbjct: 39 MEGRDLLGSAPTGTGKTIAFLIPALQHLI----DFPKKKPGPPRILILAPTRELAIQVAD 94 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + L + T + + G + L Y+ + Sbjct: 95 QATELAKYTSLKVAKI-TGGVAYMNHTEIFSTNQDILVATTGRLLQYIKEENFDCRAVEI 153 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-PGNYE 400 + + + M QT+ SAT Sbjct: 154 LILDEADRMLD-----------------MGFAQDIEVISAETRWRKQTLLFSATLESATI 196 Query: 401 LEKSGGDVVDQVVRPTGL----LDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTL 454 E S + D + I++ + + ++ + ++ ++ Sbjct: 197 REFSERVLRDPIYLEAAPSVRERKKILQSYYRSDNLPHKIALLCYLLKTPSVQKSIIFVR 256 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 T+ +L L+ G YL ++ +R E I L G VLV ++ GLD+ + Sbjct: 257 TREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVATDVASRGLDIED 316 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 +S V D G + IGR AR G AI + + K + ++ Sbjct: 317 ISHVFNFDMPYTG-----DVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVERYLKKTI 371 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + +E T KK K + + + + + + + K Sbjct: 372 KPRVVDELRPTTKAPNEKK--------AGKPSKKVLAKREEQKKAKKEKTKVKVKVKIRH 423 Query: 634 QKIHELEGLMMQHAQNLEFE 653 + L E Sbjct: 424 RDKKNLGKRREPKNLKKNKE 443 >UniRef50_B5GG34 ATP-dependent RNA helicase n=14 Tax=Streptomyces RepID=B5GG34_9ACTO Length = 748 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 60/483 (12%), Positives = 129/483 (26%), Gaps = 26/483 (5%) Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 D + PAE + L + V +L+ T + Sbjct: 40 VDAVEAPE--SAPVDEAPEAPAEKTPTFAELGLPEGIVRKLAQNGVTTPFPIQAATIPDA 97 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + L A+ + K LT + +++ + L Sbjct: 98 LAGKDILGRGRTGSGKTLSFGLPLLAQLAGGFTDKKKPRGVILTPTRELAMQVADALQPY 157 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLV 362 + + + G L ++V I ++ + L Sbjct: 158 GDVLDLRMKVVC--GGTSMGNQIYALERGVDILVATPGRLRDLINRGACSLEKVQIAILD 215 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 E + + Q + SAT N +V+ V Sbjct: 216 EADQMADLGFMPEVTELLDQVPAGGQRMLFSATLENEIDALVKRYLVNPVAHEVDAAQGA 275 Query: 423 IE---VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + + + D A+ R ++ T+ A+ + E L + G + LH Sbjct: 276 VTTMSHHILIVKPRDKAPVTAAIASRKGRTIIFVRTQLGADRVAEQLRDAGVKADALHGG 335 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + R ++ D + G + LV ++ G+ + + LV +D + + Sbjct: 336 MTQGARTRVLADFKDGYVNALVATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRS 390 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR AR G + + E + + G Sbjct: 391 GRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVDAARHQI--------GGAVFDAELAEI 442 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 G T+ + + + + D+ + L++ + + + AA+ Sbjct: 443 TGARSM-TEVQAESAGQSAKQAEREVEDL-TRELERAKRRAGEYRAEADRLVAR--AARE 498 Query: 659 RDQ 661 R + Sbjct: 499 RGE 501 >UniRef50_D2UXS9 DEAD-box ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2UXS9_NAEGR Length = 887 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 51/457 (11%), Positives = 123/457 (26%), Gaps = 21/457 (4%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 ++ + + + + R + ++ Sbjct: 280 LLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLERLL-YRDRSR 338 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 T+ E R G L + +++ Sbjct: 339 KETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQVLQSKPEIIIAT 398 Query: 340 SHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + +R D L E L + + + A QT+ SAT Sbjct: 399 PGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQTMLFSATMT 458 Query: 398 NYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAI--NER 448 + + + + + L + + + Sbjct: 459 DDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQAILLSLCTRSFPSE 518 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V++ TK M L L G +V L S + R++ + E D LV ++ Sbjct: 519 VIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHETDFLVCTDVASR 578 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGE 567 GLD+ V V D + ++ I +GR AR +G A+ + + ++ + I Sbjct: 579 GLDIKGVKTVINFDMPL-----NLKTYIHRVGRTARAGASGVAVSMSSESSIAILRKIVR 633 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 +++ + + + + K+ ++ + + E + Sbjct: 634 HSKKKGQSVQQRVIPTESIEFWTDKIEEMKPQL--KELEQQLRMEEEMQQAEMLAAKNEN 691 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + + + ++ E + + Q+ + Sbjct: 692 IEEFREDIMSRPRKE-WIMSKAQREELNEKAKAQMVE 727 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 101/653 (15%), Positives = 190/653 (29%), Gaps = 87/653 (13%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 L+ + +L ++ S + ++L N A + ++ F Sbjct: 17 SLKGQTSTWSLNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFF------ 68 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 + P P +T S ++ I RL + + +++ VS + Sbjct: 69 ------AETDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLI 122 Query: 147 GLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P + K L G +D A R+L Y R Q + G F VRG +ID++P Sbjct: 123 QKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPM 182 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 183 GS-RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRS 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + + G+E Y T Sbjct: 242 HFGDDARNSQ-----------------LYRSVKDGQTVDGLEYYLSLFHSNI-----ATF 279 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA- 384 FDYLP+D L + + + +E + Sbjct: 280 FDYLPSDCLFFNQG-----DLQAQIRQNWQDYQERYDIAQHNPDYPVLVPSELILSENET 334 Query: 385 ----LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 A I S P + L + + L + + Sbjct: 335 FSALKAFHRIQFSLQPTDKATATFKTY----------PLPDLTIQSNSEYPLAKLNAFLD 384 Query: 441 QRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q A N R+L + E L L +H + ++ + + + Sbjct: 385 QYASEHNGRILYCAESTGRRETLLTILSKH----PQFKGKLPKQ--IDSWGEFKTSKAPY 438 Query: 500 LVGINLLREGLD-MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 + + L D + + ++ G ++IQ R R + + I Sbjct: 439 EIIVGPLE---DSVYTDDFCILSESQIFGQ-----TVIQKRRRK-RKHSEFDNAISNLIE 489 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + + I ++ +T QG + + I G P+ Sbjct: 490 LDLGQPIVHF---DHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKL---------YVPVT 537 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + A +H+L A+ E+ + +L + A Sbjct: 538 SLHLISRYTGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREA 590 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 51/443 (11%), Positives = 119/443 (26%), Gaps = 43/443 (9%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P + + ++ A + Q + Sbjct: 628 DMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFA 687 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + LS + + + + + + ++ +H I Sbjct: 688 D------WPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIII 741 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + R + + + ++ATP L + D+ D + T Sbjct: 742 DEE--------HRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAP 793 Query: 419 LDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRY 475 + V D++ + ++ + E + E ++ +V Sbjct: 794 AKRLAVQTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVET 853 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + E +++++ F++LV ++ G+D+P + + I ADK G + L Sbjct: 854 AHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQ----L 909 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + M K + + +H G D Sbjct: 910 HQLRGRVGRSHHKAYAYLFTAGKALMTKDAEK-------RLTAIAKHDTLGAGFMLASHD 962 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLEFEE 654 + G + + + + L + + L+ G + L Sbjct: 963 LEIRGAGELLGDGQSG-------QIHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGA 1015 Query: 655 -------AAQIRDQLHQLRELFI 670 A D L + + Sbjct: 1016 EVELGMPALIPEDYLPDIHTRLV 1038 >UniRef50_A2QAX7 ATP-dependent RNA helicase drs1 n=37 Tax=Fungi/Metazoa group RepID=DRS1_ASPNC Length = 824 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 57/497 (11%), Positives = 127/497 (25%), Gaps = 60/497 (12%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ ++ + + F + + ++ + Sbjct: 329 FSNPTPIQRKTIPVALLG-KDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVA--- 384 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L +L T + G+ + P Sbjct: 385 --ILMPTRELAVQCYNVATKLATYTDITFCQL-VGGFSLREQENILKKRPDVIIATPGRF 441 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D++ VD L E L + + Sbjct: 442 IDHMRNSASFTVDT----------------LEILVLDEADRMLEDGFADELNEILTTIPK 485 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQVDDLLSEI 439 + QT+ SAT + + + V + D L + Sbjct: 486 SRQTMLFSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYL 545 Query: 440 RQRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 RV+V K+ A + G + LH + + + + R G+ Sbjct: 546 LYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQ---SVENFREGKA 602 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 L+ +L GLD+ V V +A +S + +GR AR G+A + Sbjct: 603 AFLLATDLASRGLDIKGVETVINYEAP-----QSHEIYLHRVGRTARAGRSGRACTIAAE 657 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA-------- 608 + KA + + + + K ++ + + + Sbjct: 658 PDRKVVKAAVKAGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQA 717 Query: 609 -----KGRGKSRPIVEPDNVPMD--MSPKALQQKIHELEGLMMQ-----HAQNLEFEEAA 656 KG + E + P + ++ +L + ++ + + + Sbjct: 718 EMQVTKGENLIKHEAEIKSRPKRTWFETERDKKAARKLGAAELNGPDAGMSKKEKQKLSN 777 Query: 657 QIRDQLHQLRELFIAAS 673 + + +L R+ A + Sbjct: 778 KDKKRLDDSRQRQEAGA 794 >UniRef50_C7NGI5 DNA/RNA helicase, superfamily II n=3 Tax=Actinomycetales RepID=C7NGI5_KYTSD Length = 741 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 60/376 (15%), Positives = 110/376 (29%), Gaps = 14/376 (3%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 VERL+ T + + AR + Sbjct: 255 LVERLARDGISTAFPIQAATLPDSLAGRDLLGRGRTGSGKTLAFGLPTIARLEGGRAQRN 314 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 LT + +++ + L + + L G P P L +++ Sbjct: 315 KPRAVILTPTRELAMQVSDALQPFAHVAGLKHKLVA--GGLPYPPQISALERGLDILIAT 372 Query: 340 SHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I I L E + + Q + SAT N Sbjct: 373 PGRLIDLIEKGAADLSAVEIAVLDEADHMAEMGFLPEVTQIMDLMPSGGQRMLFSATLDN 432 Query: 399 YELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + +VD V T +E R + Q AA + R +V T Sbjct: 433 GIDQLVENYLVDPVTHSTDDATASVTTMEHRAFLVHPHHKKTLTNQIAARDGRTVVFVRT 492 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 K A+ + E L E G LH ++ +R ++ + G VLV ++ G+ + +V Sbjct: 493 KLGADRVAEQLRESGVFAAALHGGLNQAQRNRVLAAFKDGGLPVLVATDVAARGIHVDDV 552 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR--R 572 S+V +D + + GR AR G + + + + + Sbjct: 553 SMVLQVDPP-----ADHKDYLHRAGRTARAGGKGVVVTLALPHQKRTMQRLLDQAGVDAK 607 Query: 573 EKQQKYNEEHGITPQG 588 + + + + + G Sbjct: 608 PQTMEPDSDELVAITG 623 >UniRef50_Q5SM34 ATP-dependent RNA helicase n=4 Tax=Thermus RepID=Q5SM34_THET8 Length = 517 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 66/388 (17%), Positives = 118/388 (30%), Gaps = 18/388 (4%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L E +E L T + + +A R Sbjct: 15 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ 74 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E + LT + L++ +EL + + G + L Sbjct: 75 ERGRKPRALVLTPTRELALQVASELTAVAPH----LKVVAVYGGTGYGKQKEALLRGADA 130 Query: 336 VVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 VV + + + R L E L + + QT+ SA Sbjct: 131 VVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSA 190 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEV-----RPVATQVDDLLSEIRQRAAINERV 449 T ++ + + + V+ +P+ PV +++ L + A +R Sbjct: 191 TLPSWAKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVRGRLEVLSDLL--YVASPDRA 248 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V T TK E++ + L G + LH D+ ER ++ R GE VLV ++ G Sbjct: 249 MVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 308 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGET 568 LD+P+V LV + GR R G ++ +A+ Sbjct: 309 LDIPQVDLVVHYRLP-----DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERA 363 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDI 596 RR K+ + + + Sbjct: 364 VGRRFKRVNPPTPEEVLEAKWRHLLARL 391 >UniRef50_Q5KMS9 ATP-dependent RNA helicase DBP10 n=1 Tax=Filobasidiella neoformans RepID=DBP10_CRYNE Length = 802 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 56/396 (14%), Positives = 107/396 (27%), Gaps = 49/396 (12%) Query: 218 DEEVER--LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 + + + F T + IP P + L +R Sbjct: 36 PDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSGKTLAYLIPL-LQRTGST 94 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSG---------------------IENYSRFLS 314 + + L + +++ + + Sbjct: 95 HHGQGPRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNEDEEDEEGKGKEGLRWA 154 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALD 373 GE F+ + ++ +V+ + I M + E D Sbjct: 155 LIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMHMDLRHLQTVIYDEADRLFEMGFD 214 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVR 426 + + Q + SAT + E + +V+ ++ I Sbjct: 215 VQLQEILHRLPSTRQNLLFSATLPSSVAEFAKAGLVNPLLVRLDAEQKISPDLALKFFSV 274 Query: 427 PVATQVDDLLSEIRQRAAIN-----------ERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + LL +R+ + +V TK + + E L G R Sbjct: 275 KPGEKEASLLVLLREVIGKPNQPEPADPSSAPQAIVFVATKHHVDYVAELLRTTGYRTSL 334 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 ++S +D V R + + R + DVLV ++ GLD+P + V D R Sbjct: 335 IYSSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHVINYDFP-----AGPRIF 389 Query: 536 IQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + +GR AR G A K + Sbjct: 390 VHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTFLG 425 >UniRef50_B3L6I2 ATP-dependent RNA helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6I2_PLAKH Length = 1354 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 54/367 (14%), Positives = 115/367 (31%), Gaps = 25/367 (6%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELA--ARRKVLLENN 278 L + + + + I TI + E L + L NN Sbjct: 632 LPILEKKNFKKMFGIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPLIRHVLHQAPLRNN 691 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 LT + ++ +E + + + G T + L ++V Sbjct: 692 DGPIAIILTPTRELSKQVKSEARPYC--QAVNLRILAVYGGSNIGTQLNTLKRGVEILVG 749 Query: 339 ESHVTIPQIG----GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 I + + +R L E L +++ QT +SA Sbjct: 750 TPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIHNILNNCRKDKQTAMISA 809 Query: 395 TPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T +Y + + + G + +EV V ++ LL + + Sbjct: 810 TFPSYIQNLAKKLLYKPIEIIVGEKGKTNNNIYQFVEVLQVKEKIFRLLKLLGDWSTYG- 868 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +L+ + A+ L L ++ + LH D +R ++ + G+ +L+ +++ Sbjct: 869 LILIFVNKQLEADLLYLELFKYDYKTLVLHGGQDQADREFTLQTFKEGKNKILIATSVMA 928 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D+ ++ +V + I +GR R+ G A + + A I Sbjct: 929 RGIDIKDIIVVINYECP-----DHIEDYIHRVGRTGRSNKIGYAYTFVSPDEHAKAYDIY 983 Query: 567 ETERRRE 573 + Sbjct: 984 SLIKNNI 990 >UniRef50_UPI00019270D8 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 n=1 Tax=Hydra magnipapillata RepID=UPI00019270D8 Length = 599 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 59/430 (13%), Positives = 129/430 (30%), Gaps = 38/430 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++++ F + ++ Sbjct: 198 YKTPTPVQMQVVP-LCMLGHDVLVSAATSSGKTASFLLPIIWAAISQSI--------KPI 248 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + L++ + G I+ + + P L Sbjct: 249 ALVIAPTRELCIQIEEQAKALSKSIPNFSTALLIGGNPLPIQLHRLKHKIQLVIGTPGRL 308 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D L D+ + + E L +N+ + Sbjct: 309 NDILQNYKD---------------YLCFDQIKIVAIDEVDVMLHMGFENQIKSIIDAVPW 353 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 PQ + SAT + + + V+ G + ++ A++ L + Sbjct: 354 KPQMMMFSATIPPAIETLAQSMMENPVMVSVGISGLPNAHVKQLVLWVEEASKRKKLFTI 413 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + +L+ +K+ A+ L + L ++ + +HSD ER I+ + G F Sbjct: 414 LNDSKYFTPPMLIFVESKKGADLLCDALTQKFSLKCESMHSDKTQSERTLIVNNFLTGSF 473 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 D+LV N+L G+D+P V V + D S + +GRA + + G +I + + Sbjct: 474 DILVSTNILGRGIDLPNVRQVLLFDFPN-----SIEEYVHQVGRAGQLHSYGLSIAFINN 528 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + + E + + Q L + + + G+ K S+ Sbjct: 529 SNKHIFLDLKELFETTKGNLPFEILSSPYLQTLRETRLKLYKEGKLKRKHGIDEDLNSQN 588 Query: 617 IVEPDNVPMD 626 +++ Sbjct: 589 LLQILTKSYK 598 >UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23U16_TETTH Length = 475 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 100/297 (33%), Gaps = 20/297 (6%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGM 350 + +++ LG + Y+ G P L +VV + I Sbjct: 184 LNKKVIMYLGEFLKVSAYACT-----GGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKT 238 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 D + L E L ++ K + Q SAT LE + + D Sbjct: 239 LVTDHLKLFILDEADEMLGRGFKDQINKIFQNLPHDIQVALFSATMAPEILEITKQFMRD 298 Query: 411 QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + D L E+ I + ++ TK+ ++L Sbjct: 299 PATILVKNDDLTLDGIKQFYIALDKEEWKFDTLVELYNNIEI-AQAIIYCNTKKRVDELR 357 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + L E V +H ++D R I+++ R G VL+ +LL G+D+ +V+LV D Sbjct: 358 DKLIEKNMTVSAMHGEMDQQNRDLIMKEFRTGTSRVLITTDLLSRGIDIHQVNLVINYDL 417 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + S I IGR+ R G AI + K + + + + + Sbjct: 418 PL-----KKESYIHRIGRSGRFGRKGVAINFVVPADAKFLKETEKYYQTQIVEMPLD 469 >UniRef50_B3L794 DEAD/DEAH box ATP dependent DNA helicase,putative n=6 Tax=Plasmodium RepID=B3L794_PLAKH Length = 605 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 35/357 (9%), Positives = 87/357 (24%), Gaps = 19/357 (5%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L + +T + + + + K Sbjct: 166 GLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGKTLAFLVPSINILYNIKFLPKNGT 225 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + T+ + ++ + G +++ Sbjct: 226 GVLIISPTRELCLQIYQVCKDLCKYI-PQTNGIIIGGMSRNEEKKKFIHGINILIATPGR 284 Query: 343 TIPQIGGMYRG--DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + E L + + QT SAT Sbjct: 285 LLDHMQNTKEFIYKNLISLIIDEADRLLQIGFEEEINLIVKRLPKKRQTALFSATQTTKV 344 Query: 401 LEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 + + L + + L + +++ + ++++V Sbjct: 345 ENLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKRNIS--KKIMVFF 402 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + L +H +R++ + + +L+ N+ GLD+P Sbjct: 403 NNCMSVQFYNDLLNYIDIPTFCIHGKKKQNKRLKSFSEFSAAQSAILLCTNVAARGLDIP 462 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMAKAIGET 568 V+ + D + I +GR R NG AI++ K + Sbjct: 463 NVNYIIQYDPP-----DDSKEYIHRVGRTCRGKDSNGSAIIFLMKHELKFLNYLKFY 514 >UniRef50_Q13206 Probable ATP-dependent RNA helicase DDX10 n=35 Tax=Eukaryota RepID=DDX10_HUMAN Length = 875 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 60/454 (13%), Positives = 129/454 (28%), Gaps = 42/454 (9%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE-NNKLLEEQRLTQRTQ 291 + + + + L + L ++ + Sbjct: 93 TEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRE 152 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + L ++S L G+ + + + ++V + + Sbjct: 153 LAYQTFEVLRKVGKNHDFSAGL--IIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETV 209 Query: 352 RGDR--ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + L E L + E QT+ SAT + + + Sbjct: 210 SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLK 269 Query: 410 DQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 + L+ V + ++ L S +R ++ +V + + + Sbjct: 270 NPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHLK--KKSIVFFSSCKEVQ 327 Query: 461 DLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 L G + LH + RME+ + VL ++ GLD P V+ V Sbjct: 328 YLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWV 387 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D + I GR AR G+A+L +M + + +++ K Sbjct: 388 LQFDCP-----EDANTYIHRAGRTARYKEDGEALLILLPSEKAMVQQLL----QKKVPVK 438 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL----- 632 + + + KK+ ILA Q++ + + V L Sbjct: 439 EIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDVSKLPIPEY 498 Query: 633 --------QQKIHELEGLMMQHAQNLEFEEAAQI 658 ++ L+ + Q + L +A ++ Sbjct: 499 ALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKV 532 >UniRef50_C5KE46 ATP-dependent RNA helicase DBP3, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE46_9ALVE Length = 481 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 60/509 (11%), Positives = 123/509 (24%), Gaps = 75/509 (14%) Query: 141 SVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA--ILRRLAELQYARNDQAFQRGTFRVRGE 198 +V A G P + + V + D + R E ++ +A+ + F Sbjct: 10 TVDAAVGKPSPPEVIYGDSKIEVAGLSDPTEVPLARTFEESGLRKSLRAYLKDKFAT--- 66 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 A++ + + L + E Sbjct: 67 ----------PSAIQAACWPLLLSGL-----------------------DVIGVAETGSG 93 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ L+ + ++ + + + G Sbjct: 94 KTLGFALPF---MSKAMQKGDDSMMMVLSPTRELARQIHEVIVDVDKKKQKLPSICLYGG 150 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPL 377 +VV + + G + L E L Sbjct: 151 TPKWEQQKQLKAEHPRIVVGTPGRVLDLLQDGSLDLYKVNYAVLDEADRMLDMGFLPSVT 210 Query: 378 KFEEFEAL--APQTIYVSATPGNYELEKSGGDVVDQVVRPTG------------------ 417 + Q++ SAT S + Sbjct: 211 DIFGYLPSPDKRQSLMFSATWNKEVRRLSRKLMKR-ERITVTVMGSNETKGNEDELTANT 269 Query: 418 LLDPIIEVRPVAT-QVDDLLSEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + I++ +++ L + +V+V L K+ A L L ++ V Sbjct: 270 RITQTIDIVQDRKPKMNRLWYHLGNLCPNKGVWKVIVFALYKKEAAHLERTLRDY-YDVV 328 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH D+ + R I+ G+ +LV ++ GLD+ +V+ V Sbjct: 329 GLHGDMTQMAREASIKRFTEGQNLILVATDVAARGLDVKDVTGVINYTFPLV-----IED 383 Query: 535 LIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ--GLNK 591 + IGR R G A+ + + R Q + Q G Sbjct: 384 YVHRIGRTGRAGRTGNAVTIFNADEEKQFAFDLKGLLERCGQPVSEGLAKLANQTGGFKA 443 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + K + + Sbjct: 444 SKKKVHPIYGAFFKDEEEMAKLEAKKTHV 472 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 103/688 (14%), Positives = 205/688 (29%), Gaps = 93/688 (13%) Query: 3 KPFKLNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL 56 +P + +P DQ A+R L E + +++ TG F +A++ Sbjct: 9 RPTTAEAPLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATG-LFPFLVADLARRA 67 Query: 57 --QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++P +++ L + + +P+ +T + S Sbjct: 68 TAEQPLVIVTATTRATEDLRAALSALVGTEHL-------------VELPAWETLPHERLS 114 Query: 115 VNEHIEQMRLSATKAMLERRD----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + VV+ V ++ L + VG Sbjct: 115 PRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAAVGDTYPLE 174 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + R L YAR D +RG F VRG ++D+FP ++ +RV+LF +E++ + F Sbjct: 175 DLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVA 233 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + PR P + + + EEL Sbjct: 234 DQRSLDPAPRGLDAPPCREILLTPAVRERARARAEEL--------------------PGV 273 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L + + G+E+ S + + D LPA +V + + + Sbjct: 274 RDLLLRIADGIAADGMESLSP-----VLVDGMEQVADVLPAGARFLVIDPEKARARADEL 328 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLK----FEEFEALAPQTIYVSATPGNYELEKSGG 406 + E + A + T + Sbjct: 329 VATTDEFLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHAREGGRPWFT-------LAAF 381 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + V T + + D ++ +R A VL T + A + E L Sbjct: 382 GLDTDVDLTTSST----THPGYSGKPGDAAKDLERRRAEGWSVLSTMVGPGGARHVAENL 437 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G + + E + GE +V + EGL ++ L+ + D Sbjct: 438 RAEGLPAVF------SAELDAPVA---PGEA--VVTVGPFAEGLVDEDLQLILAAERDLT 486 Query: 527 GFLRSERSLIQTIG--RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + G R + + R + + G Sbjct: 487 GKSGA------RRGEERKMPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTRR--AVGS 538 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + ++ + I +K G P + D V + + + ++ + G Sbjct: 539 GAKRTTREYLVIEYA---PSKKGQPGDRLYVPSDQLDQVTKYVGGE--EPSVNRMGGADW 593 Query: 645 QHAQNLEFEEAAQIRDQLHQLRELFIAA 672 ++ + +I D+L +L +A Sbjct: 594 AKTKSKARKAIREIADELVRLYSARQSA 621 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 71/471 (15%), Positives = 138/471 (29%), Gaps = 39/471 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + EL ++ E + D L P + + ++ Sbjct: 629 DTPWQREL-EDSFEFVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFK 687 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q E G+ + SRF + L D Sbjct: 688 AVQDGKQVAVLAPTTLLAQQHLDTFAER--YTGFPVTVRGLSRFQNPADSEATVEGLRD- 744 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + +V +H + + + + Sbjct: 745 ---GSVDIVIGTHRLLTGNVRFKDLGLLIVDEE--------QRFGVEHKETLKALRTNVD 793 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINE 447 + +SATP LE + + + + T + + V Q D + + IR+ Sbjct: 794 VLSMSATPIPRTLEMAVTGIRELSILATPPEERHPVLTYVGAQEDKQVTAAIRRELLREG 853 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + +L E RV+ H ++ + ++ D +FDVLV + Sbjct: 854 QVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTI 913 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + +AD+ G + L Q GR R+ + T K + Sbjct: 914 VETGLDISNANTLIVENADRFGLSQ----LHQLRGRVGRSSERAYAYFLYNAT----KPL 965 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E R N + G G+ + D+ G + V Sbjct: 966 TELAHDRLTTLATNTDLG---AGMQVAMKDLEIRGAGNLLGGEQSG-------HIAGVGF 1015 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFIAAS 673 D+ + + + + G + + E +A D + R A S Sbjct: 1016 DLYVRMVGEAVAAFRGEGRAPEKEIRVELPLDAHVPHDYIGSERLRLEAYS 1066 >UniRef50_A8L2W4 DEAD/DEAH box helicase domain protein n=3 Tax=Frankia RepID=A8L2W4_FRASN Length = 446 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 49/354 (13%), Positives = 92/354 (25%), Gaps = 12/354 (3%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + + + L AR + T+ + +N+ Sbjct: 1 MPDVLAGENVLGRARTGSGKTLAFGLPLLARLATTGAARPRQPRGLILVPTRELAQQVND 60 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARK 358 + +++ G L LVV + D Sbjct: 61 VLAPLTR-ALGLWMTPVYGGTSISRQISALRRGVHLVVATPGRLTDLVERDACILDEIEI 119 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 L E F + Q + SAT G + + V+ Sbjct: 120 TVLDEADFMCDLGFLPAVKALLDMTPSDSQRLLFSATLDREVEVLVRGYLPEPVLVAVDP 179 Query: 419 ----LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 + + + L + A R LV T+R A+ + + L E G Sbjct: 180 EVSQVSTLARHAMESVDRTAQLRLVTALACGAGRTLVFVRTQRDADRVAQALTEAGVPAE 239 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LH + R + G + VLV ++ G+ + + LV G ++ Sbjct: 240 PLHGGMPQGARTRALAGFTDGFYRVLVATDVAARGIHVDGIGLVLH-----LGPPEDAKT 294 Query: 535 LIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 GR AR A + A+++ + + I + Sbjct: 295 YQHRGGRTARAGADGADVLVTVPAERGKARSLLRAVGIPTQPVPTQPDDPIVAE 348 >UniRef50_C4Q2N0 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q2N0_SCHMA Length = 829 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 48/374 (12%), Positives = 98/374 (26%), Gaps = 39/374 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + F I + Sbjct: 50 YKIPTPIQRKAIP-IILSGRDVVSMARTGSGKTAAFLIPLFEKFPCHSP-------AGPR 101 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L L + L + T ++ G + + S P Sbjct: 102 ALIMSPTRELAIQTLNFTKELGKFTPLKATIIL-GGDKMEEQFAALHKSPDIIIATPGRF 160 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L L + +V + ++ + + + Sbjct: 161 LHVLMEMNLSLKSIEYVVFDEGDRLFELG-----------------FAEQLSETLKRLPR 203 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 + QT+ SAT +E + +VD ++ L + L+ Sbjct: 204 SRQTLIFSATLPKNLVEFARAGLVDPILLRLDLHSKLSQDLKLAHITCLPEEKNVILVHL 263 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +E+ +V TK E L + G +HS +D R ++ R Sbjct: 264 LGKVIHKDEQAVVFFATKHHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRTAR 323 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VL+ ++ G+D+P + V + + +GR AR G A D Sbjct: 324 VLLVTDVAARGVDIPHLDNVINFHFP-----AQPKLFLHRVGRVARAGRRGVAYSLVDPE 378 Query: 558 TPSMAKAIGETERR 571 + + Sbjct: 379 ELPYLLDVFMFLGK 392 >UniRef50_D1AZN5 DEAD/DEAH box helicase domain protein n=2 Tax=Campylobacterales RepID=D1AZN5_SULD5 Length = 407 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 58/378 (15%), Positives = 99/378 (26%), Gaps = 15/378 (3%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + + + V + K Sbjct: 13 AVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPILENWSAQTHEGKARI 72 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYS-RFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ + E + + GE + +VV S Sbjct: 73 RVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQLLEIQKGCDIVVATSG 132 Query: 342 VTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + R L E L + E Q + SAT Sbjct: 133 RLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQKRQNLLFSATYPEKM 192 Query: 401 LEKSGGDVVDQVVRPTG---LLDPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLT 455 + + I R + ++ +R+ N+ VLV Sbjct: 193 QRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLRELLRENDWDLVLVFMAN 252 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A+++ +H H D+ +R ++ + + VL ++ GLD+ +V Sbjct: 253 KRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRVLFATDIASRGLDIDDV 312 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE--TERRR 572 S V D RS I IGR R G AI D + I + + Sbjct: 313 SCVINFDLP-----RSSEDYIHRIGRTGRAGKEGLAISLIDHEDKAHFALIEKRCALKLT 367 Query: 573 EKQQKYNEEHGITPQGLN 590 ++Q K E G Q Sbjct: 368 KEQIKGFELVGEAIQKEK 385 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 63/433 (14%), Positives = 129/433 (29%), Gaps = 52/433 (12%) Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM------------ 296 ++ + + L K + T+ + Sbjct: 41 LISAETGSGKTAAYLLPALHRVLSER--KPKAGIRVLVMVPTRELAQQVMKDCEALTQQT 98 Query: 297 -----MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + P + ++L + ++D + + + M Sbjct: 99 GLKTVIIRGGQEFQYQASLLRRNPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRML 158 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY-ELEKSGGDVVD 410 + L QT+ +SAT + + + D Sbjct: 159 D-----------------MGFRDEVLAIAGQIRNDHQTLLLSATLKHRGVSSVAKDILND 201 Query: 411 QVVRPTGL------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + L+ + ++ +V T T+ AE+L Sbjct: 202 AEFIQIKPEMLQENIRQQRIFSDGPAHKTKLVDWLLSH-ETFQKAIVFTKTRVQAEELAN 260 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L H +RV LH +I+ ER I+ R G DV+V +L GLD+ V LV D Sbjct: 261 NLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATDLAARGLDVEGVDLVVNFDI- 319 Query: 525 KEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 +S + +GR R +G A+ ++ +I R + ++ + Sbjct: 320 ----AQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIERYLGIRFEPREIDSLKA 375 Query: 584 IT--PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 P + + + T ++ + + N+ +P A Q I + Sbjct: 376 KYKGPAKVKSSGKAVGHKKKKADTTTSRKKASKVRKRQTKNIGKRRAPAATSQPIEDGGF 435 Query: 642 LMMQHAQNLEFEE 654 ++ +NL +E Sbjct: 436 KPLKKKKNLAPDE 448 >UniRef50_D1XKC6 DEAD/DEAH box helicase domain protein n=2 Tax=Streptomyces RepID=D1XKC6_9ACTO Length = 790 Score = 221 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 52/475 (10%), Positives = 114/475 (24%), Gaps = 70/475 (14%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ + + F + + ++ Sbjct: 135 TAPFPIQAATIPDAL-AGKDILGRGRTGSGKTLSFGLPTLAAL-----AGGRTEKKKPRA 188 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + L Q + G G + Y+ P Sbjct: 189 IILTPTRELAMQVAD----ALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVDVLVATPG 244 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + + D + + M + + Sbjct: 245 RLRDIINRGACSLEDVQVAVLDEADQMSDLG-----------------FLPEVTELLDQI 287 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIR 440 Q + SAT N + + V + + + D Sbjct: 288 PGGGQRMLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVVKPKDKAPVTA 347 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 AA R ++ T+ A+ + E L E G + LH + R ++ D + G + L Sbjct: 348 AIAARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNAL 407 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+ + + LV +D + + GR AR G + Sbjct: 408 VATDVAARGIHVDGIDLVLNVDP-----AGDHKDYLHRSGRTARAGKSGVVVSLALPHQR 462 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + G + ++ +G G P V Sbjct: 463 RQI------------------------------FRLMEDAGVDASRHIVQGAGVFEPEVA 492 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQ-NLEFEEAAQIRDQLHQLRELFIAAS 673 ++ + + + A + E + +L + + +A + Sbjct: 493 EITGARSLTEVQADSANNAAKQAEREAADLTKQLERVQRRAVELREEADRLVARA 547 >UniRef50_A0M3C7 RhlE-like DEAD box family ATP-dependent RNA helicase n=10 Tax=Bacteroidetes RepID=A0M3C7_GRAFK Length = 455 Score = 221 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 60/455 (13%), Positives = 127/455 (27%), Gaps = 41/455 (9%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ + F + + + + ++ L Sbjct: 32 PTPIQEQAF-SSIMSGRDVVGIAQTGTGKTFAYLLPLLRMLKYSEQKN-------PRILI 83 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + E ++L + G ++ P L+D Sbjct: 84 MVPTRELVVQVVEEIEKLAK-YINLRVAGVYGGVNINTQHQDLMQGLDIVVATPRRLYDL 142 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + + I ++ M + E Q Sbjct: 143 VLRRAVQLKSIQKFVIDEVDVMLDLG-----------------FKFQVNNIIELLPKNRQ 185 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQ 441 +I SAT E + +D P +LL + Sbjct: 186 SIMFSATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLLKHLLA 245 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++VL+ KR+A+ L E L E +H+ R++ + D G +L Sbjct: 246 DTETYQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRIL 305 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITP 559 + +++ GLD+ VS V D + + + IGR R G+++L+ + Sbjct: 306 IATDVMARGLDIENVSHVVNFDTPQY-----PENYMHRIGRTGRAEKKGQSLLFTTEAEQ 360 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKV-VDILALGQNIAKTKAKGRGKSRPIV 618 AI E + + EE I + + ++ I + +A + Sbjct: 361 EYLDAIEELMQTEVPKYDLPEEVEIATELIPEEKPRAIEINNPHNVTEEAGPAFHEKKDK 420 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + QK + + ++A + Sbjct: 421 NKKVNLGGSYRREIAQKYKKPKTRGDKNANRRRKK 455 >UniRef50_A3BT52 DEAD-box ATP-dependent RNA helicase 29 n=6 Tax=Viridiplantae RepID=RH29_ORYSJ Length = 851 Score = 221 bits (562), Expect = 8e-56, Method: Composition-based stats. Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 18/380 (4%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I + R + + L+ Sbjct: 72 PTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRL-RRHDAGAGIRALILSPTRD 130 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI--GG 349 + + + L G+ + F+ L + +++ + + Sbjct: 131 LATQTLKFAQQLGKFTDLKISL--IVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVE 188 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 E L + + QT+ SAT + + + Sbjct: 189 DLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLR 248 Query: 410 DQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D + L ++ LL +R+R + E+ ++ TK E L Sbjct: 249 DPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVRERISSEEQTIIFVSTKHHVEFL 308 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E G + +D R I R + +L+ ++ GLD+P + V D Sbjct: 309 NILFREEGLEPSLSYGAMDQEARNIHISKFRARKTMILIVTDVAARGLDIPLLDNVVNWD 368 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 + + +GR AR +G A + + + + + EE Sbjct: 369 FP-----AKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTEEE 423 Query: 582 HGITPQGLNKKVVDILALGQ 601 +G+N K+ LA G+ Sbjct: 424 LLKDMEGMNLKIDRALANGE 443 >UniRef50_Q6T442 Hel61 n=5 Tax=Trypanosomatidae RepID=Q6T442_LEIMA Length = 544 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 48/378 (12%), Positives = 99/378 (26%), Gaps = 32/378 (8%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 E L + + + + A K N Sbjct: 106 EGLKTLKYPSTTDIQKFTIPLLANGHDVIGLAPTGSGKTVAFAVPALAGLKP---NPDGT 162 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ ++ ++ G + G P +L +V Sbjct: 163 PSVLVLAPTRELVQQTTKVFQNLG--CGQVRVCEAYGGAPRDLQARHLRNGCDALVACPG 220 Query: 342 VTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL--APQTIYVSATPGN 398 + G E L + + PQT+ SAT Sbjct: 221 RLKDFLDGGDVSIRNLSFLVFDEADRLLDMGFQVHLDEIMAYLDSASHPQTMMWSATWPE 280 Query: 399 YELEKSGGDVVDQ-VVRPTG----------LLDPIIEVRPVATQVDDLLSEIRQ---RAA 444 + + D V+ G + + T+ + L + + Sbjct: 281 SVQAMARKYLSDDRVLIRAGTAGAGLQVNERIKQELIFCRTFTERIEKLGSLVEDGTIDD 340 Query: 445 INERVLVTTLTKRMAEDLTEYLE-EHGER---VRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +++++ + E+ G V +H + +R ++ + +L Sbjct: 341 NKDKLIIFVERQADTENTARAFSHRLGIDTRYVGTIHGGLSQRQRDRVMSMFKSNHIRLL 400 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ GLD+P+V+ V A ++ S IGR R G A + + Sbjct: 401 VATDVASRGLDIPDVTCVVNFQAP-----KTIDSYCHRIGRTGRAGRTGTAYTFLGEEDG 455 Query: 560 SMAKAIGETERRREKQQK 577 +A + R Sbjct: 456 GLATELVNYLTRCHVTAP 473 >UniRef50_A8ETV2 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Arcobacter butzleri RM4018 RepID=A8ETV2_ARCB4 Length = 351 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 49/381 (12%), Positives = 98/381 (25%), Gaps = 39/381 (10%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + L + + G S + L Sbjct: 1 MILVPTRELATQIGKV-IDDYAKYLDIKRLAIFGGVSSKEQEKKLSNGIDILVSTSGRLL 59 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +++ + + + V I ++ M K Sbjct: 60 EHIKNKNVNLSSVTTVVIDEVDTMLD-----------------MGFLEDLEKILPNIGQN 102 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII------EVRPVATQVDDLLSEIR 440 Q + SAT + + + D VV + V + +LLS + Sbjct: 103 RQIMMFSATLNQNVKKLAKEFLSDPVVIEVAKQRSSVKIIDQQIVLVDEDKKAELLSYLI 162 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +VLV K+ A+DL +L G +H DI R + +R + G+ VL Sbjct: 163 GSRN-YSQVLVFVNMKKEADDLVAHLNLDGLPAECIHGDIRQTARAKALRKFKSGDIRVL 221 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V ++ G+D+ + +V + IGR R N G AI Sbjct: 222 VATDIAARGIDIELLPVVVN-----FALPETITDYTHRIGRTGRAGNAGTAITLLSVKDY 276 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQG--LNKKVVDILALGQNIAKTKAKGRGKSRPI 617 I + + + + + + + Sbjct: 277 KFMIEIEKELIINIPRIEVEGFEATEKKPRLFKARPKPLSQRKAESKAKEQN------KT 330 Query: 618 VEPDNVPMDMSPKALQQKIHE 638 + ++ + + + Sbjct: 331 AKTSTKKRKITKRDSNKNFRK 351 >UniRef50_B8BT14 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BT14_THAPS Length = 495 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 53/407 (13%), Positives = 107/407 (26%), Gaps = 64/407 (15%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE--- 254 + P ++ + + F + + Sbjct: 21 GFVTPTPIQASVLPV--------AMAGRDVCASAVTGSGKTAAFLLPVMERILQRGGGRT 72 Query: 255 -------RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + L L + + + T ++ + Sbjct: 73 TMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAALIVGGAKNVMSQ 132 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 P L D++ + + D + + + + Sbjct: 133 AAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLG------------ 180 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---GLLDPII 423 + + + QT+ SAT + + V G D Sbjct: 181 -----FQDEVHEIVKACPTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAP 235 Query: 424 EVRPVATQVDD-----------------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 VA +++ LL+ + + RV+V TK A L Sbjct: 236 TGVEVAPRLEQEFVRIRAGNEGVNREGMLLALLTR--TFTSRVIVFFDTKSAAHRLMIVC 293 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G + LH ++ V+R+E + R G DVL+ +L GLD+P V V + Sbjct: 294 GLCGIKCTELHGNLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMP-- 351 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 + + IGR AR G + + + K + + + Sbjct: 352 ---SQVDTYVHRIGRTARAGRGGNSCTLIGEGRRYLMKEVIKDAEEK 395 >UniRef50_Q5KBP5 ATP-dependent RNA helicase DBP5 n=3 Tax=Agaricomycotina RepID=DBP5_CRYNE Length = 546 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 67/425 (15%), Positives = 132/425 (31%), Gaps = 49/425 (11%) Query: 204 PAESDDIALRVELFDEEVERLSL--FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 P S + L ++ ++ + F + +P P + + + Sbjct: 143 PLYSVQSFKELNLHEDLMKGIIAAGFQKPSKIQEKALPLLLSNPPRNLIGQSQSGTGKTA 202 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE---MMNELGYC---------SGIENY 309 + +R + + + + +++++G G + Sbjct: 203 AFTLNMLSRVDPT---IPTPQAICIAPSRELARQIQEVIDQIGQFTQVGTFLAIPGSWSR 259 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL- 368 + + + P TL D L + R L E + Sbjct: 260 NSRIDKQILIGTPGTLVDMLMRGS---------------RILDPRMIRVLVLDEADELIA 304 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ-------VVRPTGLLDP 421 L + + ++ Q + SAT + E + + + Sbjct: 305 QQGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQ 364 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + Q + LS + I + +V K A+ + E L G V LH D Sbjct: 365 LYLECDSEDQKYEALSALYDCLVIG-QSIVFCKRKVTADHIAERLISEGHAVASLHGDKL 423 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF---LRSERSLIQT 538 + ER I+ R GE VL+ N++ G+D+P V++V D G + I Sbjct: 424 SQERDAILDGFRNGETKVLITTNVIARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHR 483 Query: 539 IGRAAR-NVNGKAILYG-DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 IGR R G ++++ D + S + I T + K+ I +K + + Sbjct: 484 IGRTGRFGRKGCSVIFTHDYRSKSDVERIMNTLGKPMKKIDARSTTDIEQ---LEKALKL 540 Query: 597 LALGQ 601 G Sbjct: 541 AMKGP 545 >UniRef50_B4L0G8 GI13618 n=8 Tax=Eumetazoa RepID=B4L0G8_DROMO Length = 595 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 65/491 (13%), Positives = 138/491 (28%), Gaps = 53/491 (10%) Query: 192 TFRVRGEVIDIFPAE--SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +++ +++ + + ++++ + + F Sbjct: 130 EYKLLPRLLENLSSYGFAQPTPIQMQALP-VLLKDRALMACAPTGSGKTLAFLTPIINGL 188 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGI 306 + L L E LT+ T + ++E G Sbjct: 189 RCHKTTG-------LRALVLAPTRELAQQIYRECGELTKGTGLRTHFISKVSEAKQQYGP 241 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 E ++ P + L L + + + + Sbjct: 242 ECKQKY---DILISTPNRVRFLLQQQPPLLDFKSIEWLVLDEADRLMEEG---------- 288 Query: 365 GFRLPSALDNRPLKF-EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LL 419 + + + + SAT + + + + V G Sbjct: 289 ----QNNFKEQLDDIYAACTNPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSAT 344 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 D + + L +R+ + VLV +K A+ L E L G V +H Sbjct: 345 DTVKQELLFVGSESGKLLAVREMVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIH 404 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537 ++ +R +R R G VL+ L+ G+D V+LV D S+ S I Sbjct: 405 AERTQHQRDNCVRAFREGHIWVLICTELMGRGIDFKGVNLVINYDFP-----PSKISYIH 459 Query: 538 TIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 IGR R G+A+ + + + ++I + + + K+ Sbjct: 460 RIGRTGRAGRPGRAVTFFTQDDTANLRSIAQIIKNSGGEVPEYMLQMKKVSKSEAKMRSK 519 Query: 597 LALGQNIAKTKA-----KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQN 649 L + TK K K + I + + V I++ + M + + Sbjct: 520 KPLDREDITTKIRPETPKNSVKLQKIDKAEKVLKRKGNTDKN-SINKAKKLGKMKEQLKG 578 Query: 650 LEFEEAAQIRD 660 + + Sbjct: 579 KAPLAKGKAKK 589 >UniRef50_Q9UTP9 ATP-dependent RNA helicase dbp4 n=1 Tax=Schizosaccharomyces pombe RepID=DBP4_SCHPO Length = 735 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 116/435 (26%), Gaps = 31/435 (7%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL-LENNKLL 281 L +T + + + + L + L Sbjct: 53 ALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGL 112 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 ++ + ++ L + ++S L G + L ++V Sbjct: 113 GALVISPTRELAIQTFETLVKIGRLHSFSAGL--IIGGNNYKEEKERLSR-MNILVCTPG 169 Query: 342 VTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + I + + L E L + QT+ SAT Sbjct: 170 RLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKS 229 Query: 400 ELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + + L+ P+ ++D L IR + + Sbjct: 230 VKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLK--FKTI 287 Query: 451 VTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V + + + E G + +LH R E+ VL +++ Sbjct: 288 VFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVAR 347 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 GLD P V V LDA + I +GR AR G A+L + K + Sbjct: 348 GLDFPAVDWVIQLDAP-----EDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLES 402 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP--IVEPDNVPM 625 ++ + + ++ ++ +I K ++ D Sbjct: 403 ----KKIAVERINVKDGKKTSIRNQLQNLCFKDNDIKYIGQKAFISYLRSIYLQKDKDVF 458 Query: 626 DMSPKALQQKIHELE 640 + ++ L Sbjct: 459 QLDKLPVEAFADSLG 473 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 61/453 (13%), Positives = 127/453 (28%), Gaps = 38/453 (8%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 D L+ P + + I+ A + Sbjct: 584 TPDQLSAIAEVKGDLEKTKPMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVL 643 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q + + E + N + G L A + V+ +H + Sbjct: 644 AEQHFRTFTQRFAEYPFMVDAVNRFKS------GAKQKETLKKLAAGEVDVIVGTHRLLS 697 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + E + + + ++ATP L S Sbjct: 698 KDVTFKDLGLV---VIDE-----EQRFGVEHKERLKHLRATVDVLTMTATPIPRTLHASL 749 Query: 406 GDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + T D +E L + I + +V + ++ Sbjct: 750 LGIREISNLETPPADRQPVETHITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYEVAT 809 Query: 465 YLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 +E +V H +D + + + E D+LV ++ GLD+P + + I + Sbjct: 810 KIEILVPEAKVTVGHGQMDAHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIFIDE 869 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 AD G L Q GR R+ + + + K + T +RR K + E Sbjct: 870 ADTYGLA----DLHQLRGRVGRSKHRAYAYFI----VNPLKLLNPTAQRRLKAIEEFTEL 921 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G G + D+ G + + ++ + L+ + L+ Sbjct: 922 G---AGFKIAMRDLEIRGAGNILGGEQSG-------HIAAIGYELYCQLLENAVRALKHQ 971 Query: 643 MMQHAQNLEFEE---AAQIRDQLHQLRELFIAA 672 + A ++ + + RD + + Sbjct: 972 PPKVAVDVVVDLPWPSYLPRDYVQGQKLRIEVY 1004 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 92/346 (26%), Gaps = 22/346 (6%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 A + E + L G T+ G GS A + A+++ +V+ P+ Sbjct: 15 RALPSLLHRTEGWTEMRAALAAG-RSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPV 73 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +M F + + T Sbjct: 74 EVEPWAEDMASFLGTRPAVFEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGG------ 127 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 E VVV +SA+ L G I++ + L Y R D Sbjct: 128 --AEGPPKVVVCGISAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYKRVDAV 185 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F RG + DIFP +S R+E F +EVE L F + + + R T+ P Sbjct: 186 EFPGEFSRRGGICDIFPPDS-PDPFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTLLPT- 243 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCSGI 306 + A + R + + + L Sbjct: 244 -----DQGTAGARPAKGHLADYLPPDSWVVLIEPRDLREQAKHFHERVSTTDGLHTTEQA 298 Query: 307 ENYSRFLSGRGPGEPPPTLFD---YLPADGLL-VVDESHVTIPQIG 348 L P + +L + + H ++ Sbjct: 299 FAGLMKLPSVVLSALPRPSVEASVHLRVESVNRFSGSVHRVRDELD 344 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 66/474 (13%), Positives = 128/474 (27%), Gaps = 39/474 (8%) Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 A S D + E D D YP + + + Sbjct: 589 AFSADTPWQKEFEDN-FGYELTEDQERCVREVKEDMEKPYPMDRLICGDVGFGKTEVAAR 647 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + Q +E + + + + Sbjct: 648 AIFKAVMDGKQCAVLVPTTILAMQHYNTFVERFKDFPVKIEMLSRFKTKKEE------NR 701 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + D L + +V +H + + + Sbjct: 702 IIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVVDEE--------QRFGVAHKDKLKLLK 753 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRA 443 T+ +SATP L S + D + V D ++ I + Sbjct: 754 ENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREETETYVIEYDDYIIKDAINREL 813 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V + + AE L + G +V + + + E + + EFDVLV Sbjct: 814 SRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEFDVLV 873 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GL++ + + I + + G + L Q GR R+ + Sbjct: 874 CTAIVENGLNILNANTMIIKEGNNLGLSQ----LYQLRGRVGRSNKNAYCYVTYEKD--- 926 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 KA+ E +R K + G G + D+ G + Sbjct: 927 -KALNEVAMKRLKAINEFTKFG---SGFQIAIRDLQIRGSGNLLGANQSG-------HFT 975 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL---EFEEAAQIRDQLHQLRELFIAA 672 NV ++ K LQ+ + E +G + A + + ++ I Sbjct: 976 NVGYELYTKMLQEALKESKGEAQKEPVETTINIKINAYIDKKYIEDEKQRIITY 1029 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 91/661 (13%), Positives = 215/661 (32%), Gaps = 83/661 (12%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 S D L GV+ + K + + +RP + + + A Sbjct: 2 IESILSAATFLNKINYTADKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAK 61 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 + Y + + E + Y P+ E S + + R++ K + Sbjct: 62 ETYLNLSDILSEKDIL-------------YYPAKPITHEFIDSHSMELTNKRVNVIKNAV 108 Query: 132 ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 ++V S++A G ++ I+D + L + YAR + +G Sbjct: 109 MGSKKIIVTSINAAIEKGL-FWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQG 167 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 + V+G ++D+F D++ +R+E FD+E++ + FD TG+ + I +FT+ P + Sbjct: 168 AYSVKGGIVDVF-IMGDEVPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLL 226 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + I + ++++ +L E++ + + + E + + + + Sbjct: 227 DYDEINKLNKKVRAKLEKAIT-------QNEDEEIDKNYRELYEKIADDTNDTTKYIFYA 279 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +L D D L++ D+ + ++ ++ + L E+G L Sbjct: 280 SKQT-------KSLIDLYK-DPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQ 331 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 ++N E S + + + D V + Sbjct: 332 VNNHFKFAEA---EERFINLDSLIYFDLSMASNNLFCKDIVEVKSSDN------INYVKN 382 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 ++ L+ I + +V++T ++ ++L+E+L + Sbjct: 383 INYLIDNIVTYLKEDYKVIITYKNEKEKKNLSEFLSNYNIDYT---------------HT 427 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 ++ G LV N+ R G+++ L + D +++ K Sbjct: 428 VKEGHVA-LVKSNI-RNGVNILSEKLFILSYNDVLIKKEAKK---------------KRT 470 Query: 552 LYGDKITPSMAKAI---GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + I +Y + GL ++I G + Sbjct: 471 KKDKHNEKAFFSEITKGDYVVHETYGIGRYLGMVNMEAGGLYNDYLEIEFAGNDKL---- 526 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + + V + K+++L + ++ +N + ++ + L Sbjct: 527 -----YVIANKMNLVSKYIGSSDAPPKLNKLGSQVWENTKNKTRKAVKELAKEYITLYAK 581 Query: 669 F 669 Sbjct: 582 R 582 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 96/647 (14%), Positives = 198/647 (30%), Gaps = 89/647 (13%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 H+ L V I+ + Q T+V+ P+ A +L + E ++ Sbjct: 15 NDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQD------- 67 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-D 150 P +T S ++ I RLSA + + + + +S + Sbjct: 68 -------VCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCP 120 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P +L + G + + +L Y +Q + G + VRG ++D+FP S + Sbjct: 121 PQYLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-V 179 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 R++ FD+E++ + FD T + + I + P + T + I + +E Sbjct: 180 PFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEI 239 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 R+ + + +++ SGIE + TLFDYLP Sbjct: 240 RRDP----------------EHIYQQISKGTLISGIEYWQPLFF-----AEMATLFDYLP 278 Query: 331 ADGLLVVDES-----HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L V E+ Y + + P L + Sbjct: 279 EQTLFVDMENNQTQGERFYQDAKQRYEQRKVDPMRPLL----SPEKLWLNVDEVNRRLKS 334 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 P+ + + + + + + EV + Q + L + Sbjct: 335 YPRITFKAEKVRSSVRQ------------KNLPVAALPEVTIQSQQKEPLGQLRQFIEHF 382 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 VL + T+ E L + L + + + + + + +F +LV Sbjct: 383 KGNVLFSVETEGRRETLLDLLSPLKLKPKQI----------QSLEQIENEKFSLLVSS-- 430 Query: 506 LREGLDMP-EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 L +G + + + I +A+ G IQ R R + K Sbjct: 431 LEQGFIIEQSLPVAIIGEANLLGKR------IQQRSRDKR-KTINPDTLV--RNLAELKI 481 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +Y + G+ + + + ++ P+ + Sbjct: 482 GQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKL---------YVPVTSLHLIS 532 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + +H+L ++ E+ + +L + A Sbjct: 533 RYVGGSDESAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREA 579 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 55/445 (12%), Positives = 116/445 (26%), Gaps = 35/445 (7%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F +D V + ++ A Sbjct: 593 QQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHK 652 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + Q + + L +E SRF + + + + L + Sbjct: 653 QVAVLVPTTLLAQQHYENFKDRFANL--PVNVEVLSRFKTA----KEQKQILENLAEGKV 706 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ +H I + + + + ++A Sbjct: 707 DILIGTHKLIQSDVKFNDLGLLIIDEE--------HRFGVGQKEKIKQLRANIDILTLTA 758 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTT 453 TP L + + D + T + V D ++ I + +V Sbjct: 759 TPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLH 818 Query: 454 LTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 E+ E L R + H + E ++ D ++VLV ++ G+D Sbjct: 819 NDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGID 878 Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 +P + + I AD G + L Q GR R+ + M K Sbjct: 879 VPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAER---- 930 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + E G D+ G + + +++ + + Sbjct: 931 ---RLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG-------QIESIGFSLYMEL 980 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAA 656 L + L+ + L ++A Sbjct: 981 LDAAVKALKEGREPSLEELTQQQAD 1005 >UniRef50_A2QY39 ATP-dependent RNA helicase dhh1 n=35 Tax=Eukaryota RepID=DHH1_ASPNC Length = 505 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 48/433 (11%), Positives = 103/433 (23%), Gaps = 62/433 (14%) Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 L +R ++ + E + + P + + I + + Sbjct: 47 LEFEDFYIKRELMMGIFEAGFEKPS------------------PIQEETIPVAL------ 82 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 F I + L L Sbjct: 83 --TGRDILARAKNGTGKTAAFVIPTLERI--------NPKSTKTQALILVPTRELALQTS 132 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + M+ G + + P + D + + Sbjct: 133 HVCKTLGKHLG-INVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECP 191 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + F Q + SAT Sbjct: 192 TFVMDEADKLL-----------------SPEFTPVIEQLLSFHPKDRQVMLFSATFPLIV 234 Query: 401 LEKSGGDVVDQVVRPTGLLDPI--IEVRPVATQVDDLLSEIRQR--AAINERVLVTTLTK 456 + + + I + + + + ++ + Sbjct: 235 KSFKDKHMRNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNST 294 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E L + + E G Y H+ + R + D R G LV +LL G+D+ V+ Sbjct: 295 NRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVN 354 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 +V D ++ + + IGR+ R + G AI + I + + Sbjct: 355 VVINFDFP-----KNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQELGTEIQP 409 Query: 576 QKYNEEHGITPQG 588 N + + Sbjct: 410 IPQNIDKKLYVYD 422 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 61/459 (13%), Positives = 128/459 (27%), Gaps = 46/459 (10%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F++ D L P + + I+ A Sbjct: 544 FEDSFPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQV 603 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA---DG 333 Q + M G + + R P + + Sbjct: 604 AVLAPTTVLAQQHLLTFTQRMGSFGVRVEMLSRFR---------TPKQQREIMERVAEGK 654 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + V+ +H + + + + + + + +S Sbjct: 655 IDVLIGTHRILNPDVEFHDLGLLIIDEE--------QRFGVAQKEKIKQRSAGIDVLTLS 706 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVT 452 ATP L + D + + D + +E + + + R+ Sbjct: 707 ATPIPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDDGMVREALEREIRRGGRIYYV 766 Query: 453 TLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + +L E G + H + E +++ G+FDVL+ ++ GL Sbjct: 767 HNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGL 826 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 D+P + + I A+ G + L Q GR R+ + K + + E + Sbjct: 827 DVPLANTIIIDGAENFGLSQ----LYQMRGRVGRSSRLAYAYFLYKKD----RVLSEVAQ 878 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 +R + + E G G + D+ G + + V D+ + Sbjct: 879 KRLQAIRDFTELG---AGFKIAMRDLEIRGAGNLLGAEQHG-------QITGVGFDLYCR 928 Query: 631 ALQQKIHELEG-----LMMQHAQNLEFEEAAQIRDQLHQ 664 L++ I+ L+ + +E + A I D Sbjct: 929 LLEKTINTLQNGGNPDEPVPPDPVIEMKLDAYIPDDYID 967 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 91/666 (13%), Positives = 191/666 (28%), Gaps = 143/666 (21%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLA 64 + + Q + +R + + L G+TGS K + + +P ++L Sbjct: 1 MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 N+ E+ F+P+ A+ P+S + + NE + R Sbjct: 61 VNRESIRAQRRELAHFYPDLAMRE------------LYPAS-LIHGQVDTRNEQVMAERA 107 Query: 125 SATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +A + ++ + ++ A+ A P+ ++ L L VG I+Q ++ +L + Y R Sbjct: 108 AALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +Q G VRG+++D+FP D +R+ TI Sbjct: 168 TEQVDTLGQVAVRGDILDVFPINGKDS-VRI----------------------EWFDNTI 204 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + +R + + ++ A + Sbjct: 205 DAMKRFDLDTQRSIGTISQVGIMPLAVPNQEISA-------------------------- 238 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +LF YL AD L V+DE + + +R + L++ Sbjct: 239 --------------------SLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLD 278 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 + A + L + + Sbjct: 279 QETMIQQAGETHLLT---------------------VSDLGHPYFPQAPRIHV----QVR 313 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + P D L +++ L+ T+ A L E L+ G + + + Sbjct: 314 AMAPYNKNTDLLQKDLKGWLDQGIHPLIMMGTRDKAAGLAESLKGAGLPMAF--AGQFQG 371 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + L G + + + ++D G + R Sbjct: 372 VPETGGQVFA----------GSLTNGFYFWDEKWLLLTESDIFGAQKKRRL-------TK 414 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G A+ Y KA + +Y I G+++ + + G + Sbjct: 415 TKGKGPALNYFS-----DIKAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGDK 469 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P+ + + + + K+ + Q A + + +L Sbjct: 470 L---------HVPVEQVGLLHKYVGNEGTPPKLSNMGRKDWQKATRKAQKAITILATELL 520 Query: 664 QLRELF 669 +L Sbjct: 521 RLYAQR 526 >UniRef50_C1DYF6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1DYF6_9CHLO Length = 442 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 57/401 (14%), Positives = 106/401 (26%), Gaps = 43/401 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME---E 262 ++ E + + + + + + Sbjct: 18 HKRTTPVQRECWPPACVGRDVLGI-APPGSGKTLAYLLPAVEFAMRDARDNPRKKRDPPG 76 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR---GPG 319 L L +L R + G + Sbjct: 77 RPSALVIAPTRELTQQIASVCNKLK-RAAPVRCVAVYGGASQSEQEDELAQPTSMATLVV 135 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L + L + + + + M + + Sbjct: 136 GTPGRLLAVMGTGALGLERARLLVLDEADRMLALG-----------------FAEQLEQI 178 Query: 380 EEFEA-LAPQTIYVSATPGNYELEKSGGDV-VDQVV---RPTG--LLDPIIEVRPVATQV 432 E QT+ SAT + + + G +D + V + Sbjct: 179 REALPRPGRQTLMFSATFPKGVRAVAKAWLAPKPAIGDGVAAGDLNVDQTVHVCAEHKKG 238 Query: 433 DDLLSEIRQRAAINER----VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 LL I + + R VLV + + + L+ HGE+V LH ++ R + Sbjct: 239 RKLLKHITELRKNDGRSKSRVLVFANRIKTVNFVGDLLKRHGEKVCTLHGELKQERRDQA 298 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 ++D + G+ VLV ++ GLD+ + V D S +GRA R Sbjct: 299 LKDFKSGKSPVLVATDVAGRGLDITGLEHVVNWDMP-----GSVEQYTHRVGRAGRSGRK 353 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 G A+ + + +A + RR G QG Sbjct: 354 GAALSFFTRNMAPIAPDLVRLL-RRGGHFVDPNLEGQIRQG 393 >UniRef50_Q3LWE1 Translation initiation factor 4A2 n=1 Tax=Bigelowiella natans RepID=Q3LWE1_BIGNA Length = 378 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 107/367 (29%), Gaps = 32/367 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ ++L L G+ + T Y+ + + L L Sbjct: 36 IQSITLIPLLKGRDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIR 95 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 L T+ + + G G + + + G P + L L + Sbjct: 96 NVFNVLNIYTKNSITSCH-GGRWLGEDLKNLKKNFHGIVGTPGRVLHLLQIGSLAITKIR 154 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + + Q I SAT Y Sbjct: 155 TFVLDEAD-----------------ILMNKNFKIDIFNIYRYLNSKVQIIICSATIPLYT 197 Query: 401 LEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTT 453 L+ + ++D V + + L +I + + +VL+ Sbjct: 198 LQAASKFLLDPVMILMRKEEINIDKIKQFYISVFIEENKLLALLDIFETLLVG-QVLIFC 256 Query: 454 LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 T R A + L + V +H + ER I ++ R G+ LV ++ GL++P Sbjct: 257 NTIRKANWIHNKLLANNFNVGLIHGRVIQKERTNIFKNFRDGKTRALVTTDVSSRGLNIP 316 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRR 572 EVSLV D + + IGR R G AI + K + Sbjct: 317 EVSLVINYDIPTF-----KDVYLHRIGRTGRFGRQGVAINFAKLRDLHNIKNLEVHFSIT 371 Query: 573 EKQQKYN 579 ++ Sbjct: 372 IEELVKF 378 >UniRef50_A4RXX8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RXX8_OSTLU Length = 437 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 94/359 (26%), Gaps = 49/359 (13%) Query: 231 TGQIVSTIPRFTIYPKTHYV---------TPRERIVQAMEEIKEELAARRKVLLENNKLL 281 F + + V + + L L + Sbjct: 36 APTGSGKTAAFMLPLISRLVRESAEAPTEAEVVDGEFGVPARPKVLVLAPTRELALQIHM 95 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG--LLVVDE 339 E ++ T G + + P L + D + + Sbjct: 96 ETRKFIFGTPLWCA-CAYGGSSIKPQLEELAFAPEIIVATPGRLLSMVREDARYVDLSGV 154 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + M + + + +P QT+ SAT Sbjct: 155 QTLVMDEADRMLDMGFEPQLNELLGDYGIP-------------AKNERQTLMFSATFPPQ 201 Query: 400 ELEKSGGDVVDQ----------VVRPTGLLDPIIEVRPV--ATQVDDLLSEIR----QRA 443 L + + V + ++ P ++ LL + +R Sbjct: 202 VLRLASYYMRAPPHAARVICGRVGSTVANIKQVLIETPHLREQKLPYLLRVLEAVEAKRE 261 Query: 444 AINERV---LVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFD 498 E V L+ K AE L + + E V LH + R+ + G Sbjct: 262 NDGEDVGLTLIFCKQKGTAEWLRQQIVEVTPSLAVEELHGSLTQGARLRALDAFATGAAK 321 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK 556 +LV ++ GLDMP+V+ V D I IGR R G A + Sbjct: 322 ILVATDVAARGLDMPDVNHVINFDMPT--KKSEFDDYIHRIGRTGRAGRKGIATSFYIP 378 >UniRef50_Q98RE0 ATP-DEPENDENT RNA HELICASE n=1 Tax=Mycoplasma pulmonis RepID=Q98RE0_MYCPU Length = 480 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 56/422 (13%), Positives = 116/422 (27%), Gaps = 67/422 (15%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 IL+ L E+ + + + + + E Sbjct: 11 EILKSLDEIGFEKPTKIQE------------------AVLPFAFE--------GKDIIGQ 44 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 F I ++ RI L L N + L + T Sbjct: 45 AQTGTGKTAAFAIPILSNLDCSINRIQH--------LVIAPTRELANQIYDQLNILGKYT 96 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ G + + P L D L + + + T+ + + Sbjct: 97 CSKIALIL-GGVSYEKQKAALNSGVNIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADEL 155 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + N +K Q + +AT + S + Sbjct: 156 LKIG-----------------FYNEIIKIMNKLPKKRQNFFFTATFDEKTKKLSQEITNE 198 Query: 411 QVVR-------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + T +D V ++ L+ + ++ TKR ++L Sbjct: 199 AKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDF--KKPTASVIFGRTKRRVDELA 256 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E G + D+ +R ++ + + +++V +++ G+D+ V LV D Sbjct: 257 SALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMARGIDVSHVDLVFNFDL 316 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 IGR R G+AI + K I + K+ + Sbjct: 317 P-----EEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKIMTETKSIIKEISIPSKE 371 Query: 583 GI 584 + Sbjct: 372 HL 373 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 94/673 (13%), Positives = 187/673 (27%), Gaps = 99/673 (14%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 I R+ L+ G ++ S + F +A RP +++ + A + Sbjct: 8 QQLLTSREIHRIWNELDQGKDCTL--NISQSARPFIVAACACAQARPILLVVSGEDAADR 65 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 + + + V P D S + + R A + + Sbjct: 66 AARILAGWLGPDVVFR-------------YPDRADLPWSDKSASAEVCGTRAEALFHLAQ 112 Query: 133 RRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQ---AF 188 + VVVAS A+ P + +G +D A+ R+L Y Sbjct: 113 PQRCVVVASARALLRRLPPKTSSFAQQQKICIGDELDIYALARQLVLWGYVSTTVVKEVR 172 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 + G F V G+ +D+F + +R+ F +EV+ + P TGQ +S+ + Y Sbjct: 173 EPGYFCVHGDSVDVFSPC-EQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARE 231 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 E I A ++ ++ +++ E T + Sbjct: 232 LELSPETIQCAKNKLYDKAQEDLDTERVLDQIEESV----YTNEL-------------DA 274 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y +L ++ DY+ L+V+ E Y L+ Sbjct: 275 YLPYLYPST-----ASVIDYMHPSALVVLAEPRALFDDCQRAYD-------ELMHASTEK 322 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 +LD E + Q + +S + + + E + Sbjct: 323 RVSLDGLYTSPVELDFGKQQRLSLS--------SLARQGMR-------ASNHVVTEQCDI 367 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERM 486 A ++ IR+ A N V+ + + L + H+ +R Sbjct: 368 AGSASKMIGRIRELLANNSAVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRA 427 Query: 487 EIIRDLRLG----------EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 V+ + + G+ +P L +D L +++ Sbjct: 428 PEHESEHNQDLEAQNLPLPRNKVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRF 487 Query: 537 QTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 Q I + + K + + G + Sbjct: 488 QKIDPTK-------LTF-------PFKPGDYVVHATHGIALFQKIVQQEVAGKKRDY--- 530 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 T A+ P + D + + P ++ L A + A Sbjct: 531 ------FLLTYAQDDKLYVPFEQVDKITRYIGPDGSTPRLTRLNSADWSRACTRARKSAQ 584 Query: 657 QIRDQLHQLRELF 669 ++ L L Sbjct: 585 KMAFDLVDLYTRR 597 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 61/420 (14%), Positives = 115/420 (27%), Gaps = 35/420 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + P + + ++ + Sbjct: 626 DQARALDDIKADMQSATPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILAQ 685 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + E E R LS + + V+ +H + Sbjct: 686 QHFETFYERFTPF------EVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSD 739 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + + +SATP ++ + Sbjct: 740 VNPSNLGLIIIDEE--------QRFGVQHKEQLKNIREQVDVLTLSATPIPRTMQMAMSG 791 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 V D + + V DL+ IR A +V + + +D E + Sbjct: 792 VRDMSLILSAPAGRKPVRVHVGEWDSDLISDAIRLELARKGQVYYVSNRVKTIDDALERV 851 Query: 467 EEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 RV H + + E++ E DVLV ++ G+D P + + I D+ Sbjct: 852 HACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQ 911 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + L Q GR R + T + E RRR + ++E G Sbjct: 912 RLGLAQ----LYQLKGRVGRGRVQAYAYFMFPPTEP----LTEEARRRLEAIYEHQELG- 962 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G+ + D+ G + S V D+ + L + E +G Sbjct: 963 --SGMRIAMKDLEIRGAGSLMGAEQHGNLS-------GVGFDLFTQMLSDAVREAKGETQ 1013 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 60/442 (13%), Positives = 127/442 (28%), Gaps = 37/442 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L + + + + I+ A ++ + Sbjct: 572 DQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQ 631 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q ++ + E L + + ++ +H + + Sbjct: 632 QHYNTFVQRLKEFPV------RIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKD 685 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + ++ATP L S Sbjct: 686 VVFKDLGLLIIDEE--------QRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIG 737 Query: 408 VVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + D V + + V + + I + A + +V D+ + Sbjct: 738 IRDMSVLEEAPNERMPIQTYVMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRI 797 Query: 467 EEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + V + H + E +I+ D G+ DVLV ++ GLD+P + + I DAD Sbjct: 798 QSLVPDANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDAD 857 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + L Q GR R+ + K + E +R + + G Sbjct: 858 RFGLSQ----LYQLRGRVGRSNRMAYAFLLYQRD----KLLKEVAEKRLSAIREFTDLG- 908 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G+ + D+ G +A+ + V D+ K L + + +L+G Sbjct: 909 --SGIKIAMRDLEIRGAGNLLGEAQSG-------HMEAVGYDLYCKMLNEAVRQLKGGPE 959 Query: 645 QHAQNLEFEEA--AQIRDQLHQ 664 + A I + + Sbjct: 960 AETFTTLIDLNVDAYIPEYYIK 981 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 113/306 (36%), Gaps = 29/306 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + + G + K ++ + + +V+ N+ A + Y E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYK-LVVFSNEEKAKKAYEEYLLF 72 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVV 137 E P+ D + + R+ +A+ E+ V Sbjct: 73 GEE---------------TYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117 Query: 138 VVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+ ++ A + G+ PD K +H+T +D + + L L Y R Q G F VR Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP ++++ +R+EL+ +E++ + +FD + + + I TIYP + + Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236 Query: 257 VQAMEEI----KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 V ++ L E + +E + T+ + G E F Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEA----EYTESLKNRADAGMKEEGEEELRVF 292 Query: 313 LSGRGP 318 + Sbjct: 293 QTKDII 298 Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 81/249 (32%), Gaps = 41/249 (16%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L ++++ RV++ + ++ A+ L E L ++ Y Sbjct: 332 VNPYNNSFELLTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFYS-------- 383 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI----QTIG 540 ++ R+++ GE ++ EG + P + V I ++D G + ++ Q I Sbjct: 384 -EDMQREVKPGE--IMAAYGYASEGYEYPMLKFVVISESDIFGRKKKKKKRKKYEGQRI- 439 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 + K Y I + + K + I+ Sbjct: 440 ----------------QDFAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAE 483 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P+ + D + A + ++++L + ++ + + Sbjct: 484 GGVL---------YIPVAQMDLIQKYAGADAKKPRLNKLGTIQWGKTKSQVKKAVQIVAK 534 Query: 661 QLHQLRELF 669 L +L + Sbjct: 535 DLVELYAVR 543 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 69/469 (14%), Positives = 129/469 (27%), Gaps = 38/469 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + E F+ D L P + + ++ Sbjct: 569 DTPWQRE-FEAAFPYEETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFK 627 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q + +L + Sbjct: 628 AVMDGKQVAVLVPTTILAQQHYRTFSSRFAPYP------IRVAWLCRFQTPAEQREVIKG 681 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L A + +V +H + + + + Sbjct: 682 LKAGTIDIVIGTHRLLQNDVQFRDLGLVIIDEE--------QRFGVLQKEKLKLLRKEVD 733 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINE 447 + ++ATP L S + D T D + V + ++ IR+ A Sbjct: 734 VLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRRELARGG 793 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ +++ RV Y H + I+ D ++DVLV + Sbjct: 794 QVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTI 853 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + + DAD+ G + L Q GR R + + K I Sbjct: 854 VENGLDIGNVNTLIVKDADQLGLSQ----LYQLRGRVGRTNRLAYAYFLYRRD----KII 905 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E + R + K G G D+ G + V + Sbjct: 906 NEAAKARLRAIKDFTSLG---AGFKVAKRDLEIRGAGNLLGTEQHG-------HIQAVGL 955 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEE--AAQIRDQLHQLRELFIAA 672 ++ + LQ+ I EL+G + + E +A I D + Sbjct: 956 ELYCRLLQEAIKELKGEEVVPPVDPVIELTVSAYIPDDYVPFDQKLEIY 1004 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 105/676 (15%), Positives = 205/676 (30%), Gaps = 132/676 (19%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + ++++++ L+ G Q + G++G+ +F +A + +++ P++ A Sbjct: 4 LLKLFCEAPSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L E+K + E + F + + + + RL + A+ Sbjct: 62 LTLAAELKLLWGEE--------------VFVFLPREIFGLGPSLPSAFVPRQRLLSLAAL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R+ VVV + + + GL P+ + L G + + +RL E Y R Sbjct: 108 ARRQGVVVATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVP 167 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG ++D FP S + +RVE +E+ R++ FDP + + + + + P Sbjct: 168 GQFARRGGIVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAVKVEPA---- 222 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 L E L+Q E Sbjct: 223 -----------------VEVPNPCTGREILPESWFLSQ----------GEDSFPYPEVLL 255 Query: 311 RFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L R +L YLP L +V+ + + +LP Sbjct: 256 PCLFPRVV-----SLLAYLPPGAPLALVEAQAAEK--AAREAEERQMEICREMIAKKKLP 308 Query: 370 SALDNRPL---KFEEFEALAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPIIE 424 L + + +L P + +S P L + T Sbjct: 309 EESRKAFLSWSEVAKELSLYPHRLRLSFLPEKNGEVLGLA---------VRTAP------ 353 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L EI++ + RV++ + + + E L+E+G Sbjct: 354 --SFLGKFAQLAEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGI------------- 397 Query: 485 RMEIIRDLRLGEFDVLVGINL----LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 I L V + LREG PE V + A+ G + Sbjct: 398 ----IPRLTPDSAPVGTVTVVKGGNLREGFIFPEAQFVLLTPAEIFGRRQ---------- 443 Query: 541 RAARNVNGKAILYGDK----ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 A K Y ++ +G+ ++ I Sbjct: 444 ---------ATFSPTPTPVVEEEREFKPGEYVVHPEHGIGIYRGLVQLSVEGVTREYALI 494 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 G++ A G + + + + ++ L G + + + A Sbjct: 495 QYAGEDRLYLPADQLGV---------LERYVGGEGAKPRLSRLGGGEWKRVRARVKQAAT 545 Query: 657 QIRDQLHQLRELFIAA 672 + +L +L + A Sbjct: 546 DVARELLRLYAMRETA 561 >UniRef50_C2FY34 ATP-dependent RNA helicase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FY34_9SPHI Length = 398 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 48/373 (12%), Positives = 101/373 (27%), Gaps = 15/373 (4%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L VE+L+ + I + E + Sbjct: 6 LNLSKLLVEKLNTLQITEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVLYLLT- 64 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 E+ + + + T+ + + G+ L D Sbjct: 65 --ESKQSEHKTLVLSPTRELAQQTYLRILNCTPSEVNISTISIFGGQSYEKQAAELSTDP 122 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + + + +K + E L + + QT+ Sbjct: 123 AIVVATPGRLLDLMDQKLIDLSAFKKVVIDEADELLQLGFMAALFRILGYLPSDKQTLLF 182 Query: 393 SATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQVDDLLSEIRQRAAINE-- 447 SAT E + I + +D + I+ + Sbjct: 183 SATFPKELEELVPKVLHQPFRFEVQNREPQQSQIHQYLLFVDKNDKKNLIKYLIDHYKID 242 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 L+ T T + + L++HG + L+ D R + D + F+ LV ++ Sbjct: 243 TALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTATVEDFKNRNFNFLVATDIAS 302 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIG 566 GL + ++ V + + + IGR AR +G + D + Sbjct: 303 RGLHLDDLDHVINYEIP-----DTSEQYMHRIGRTARGIRDGYTYTFCDAEDNPNLIKLQ 357 Query: 567 ETERRREKQQKYN 579 ++ + Sbjct: 358 IALKKNIPILSEH 370 >UniRef50_Q6BFH3 Nucleolar RNA helicase II, putative n=3 Tax=Paramecium tetraurelia RepID=Q6BFH3_PARTE Length = 664 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 62/368 (16%), Positives = 110/368 (29%), Gaps = 25/368 (6%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL-LENNKLLEEQRLTQRTQFDL 294 TIY + + R + L L+ NK L + + Sbjct: 52 QQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKNPYVLVLLPTRELAI 111 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRG 353 ++ E EN R + G D + +VV + + Sbjct: 112 QVTTEFNTILHKENEYR-IYSIYGGTDLRNQIDQVRQGCEIVVGTPGRIQDLLERKVLKL 170 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDV---- 408 D + L E L K + Q + SAT ++ E S + Sbjct: 171 DEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQMLLFSATIPDWVKELSHKYMEANT 230 Query: 409 --VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA----INERVLVTTLTKRMAED- 461 ++ + R ++ + + L I + + R ++ TKR + Sbjct: 231 KHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYGGRHARTIIFCETKRECNEI 290 Query: 462 -LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L L + LH DI +R + G+F LV N+ GLD P+V L+ Sbjct: 291 ILHSKLPA---ETQPLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAARGLDFPQVDLIIQ 347 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + + S I GR R G I + K + + + + + + Sbjct: 348 CNPP-----KDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIERVERVAKIKFIKISAP 402 Query: 580 EEHGITPQ 587 + I Sbjct: 403 QHQDIIKA 410 >UniRef50_B6KNF3 ATP-dependent RNA helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6KNF3_TOXGO Length = 652 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 117/405 (28%), Gaps = 42/405 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ + L F + + + +E L Sbjct: 244 QPTPIQMQAIPLLLGGQHLL-ATAPTGSGKTFAFLL-------PLLALLKKPGKEFARLL 295 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E L + + + S + S+ P L Sbjct: 296 VVCPSRELAKQTQREFDSL-AGARGFRCRLLDEQKQSVDQAASQAKRVDAVVTTPLRLVQ 354 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 +L + + H+ + + + + + G PS Sbjct: 355 FLRDGRVSLAQCRHIVLDEADKLLDLGQLD---EILAGCTFPS----------------L 395 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEIRQRA 443 Q SAT L + + + V G + I + T + L +R Sbjct: 396 QVSLFSATLPPDVLRLADSLLHNPVHISIGSPNAAATSIEQELLFCTNEEGKLLALRTLH 455 Query: 444 AINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + VL+ +K A+ L L G V +H+D +R + + R G+ VL Sbjct: 456 LTGKFVPPVLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDTVEAFRRGQIWVL 515 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + +++ G+D V LV D +S I IGR R G+AI + Sbjct: 516 ICTDVMARGVDFKNVELVINYDFP-----QSAAVYIHRIGRTGRAGRQGRAITFYTTADI 570 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 +++ ++ + E + K+ D+ Sbjct: 571 PNLRSVVGVMQQT-STCEVPEWLQKVTKMTAKQKRDLQRRAPERK 614 >UniRef50_Q4PNH7 Putative cold-shock dead-box protein A n=1 Tax=uncultured marine bacterium 66A03 RepID=Q4PNH7_9BACT Length = 659 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 52/398 (13%), Positives = 110/398 (27%), Gaps = 39/398 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ E + + S F I T + + + +I + Sbjct: 24 TPVQ-EAVLKIEDSNSDLLVSAQTGSGKTLAFGISIATTLLAEKMEFDRP--KIPLAIII 80 Query: 270 RRKVLLENNKLLEEQRLTQRTQ-FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L E + L RT+ + G E + P L D+ Sbjct: 81 APTRELALQVRKELEWLYVRTKAQFASCV--GGMDPRAERRTLESGAHIVVGTPGRLRDH 138 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + L + D V + + M + + Sbjct: 139 IERGVLRLSDIKAVVLDEADEMLD-----------------MGFREDLTFILGKAPVERR 181 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-------IIEVRPVATQVDDLLSEIRQ 441 T+ SAT ++ + D V + + +++ +R Sbjct: 182 TLLFSATVPTQIVKLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRY 241 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V T+ L L G V L ++ ER ++ +R G+ +V V Sbjct: 242 HDVSG--AIVFCNTRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCV 299 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+P + LV D +S +++ GR R G +++ Sbjct: 300 ATDVAARGIDLPNLELVIHADLP-----QSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFK 354 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + ++ I + ++ Sbjct: 355 KVERMFDSNGIEPIWVNPPSADQIIEKD-RISLLKSEL 391 >UniRef50_B5X544 RE58551p (Fragment) n=6 Tax=melanogaster subgroup RepID=B5X544_DROME Length = 609 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 70/474 (14%), Positives = 134/474 (28%), Gaps = 50/474 (10%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++++ ++R F + L Sbjct: 157 PTPIQMQALPVLLQR-RALMACAPTGSGKTLAFLTPIIN-------GLRAHKTTGLRALV 208 Query: 269 ARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L E LT+ T + ++E G E R+ P + Sbjct: 209 LAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRY---DILVSTPNRV 265 Query: 326 FDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + L + + + + + + Sbjct: 266 RFLLQQEPPLLDLSHVEWFVLDEADRLMEEG--------------QNNFKEQLDDIYAAC 311 Query: 384 -ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA----TQVDDLLSE 438 + SAT + + + + V G+ + E L Sbjct: 312 SNPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVA 371 Query: 439 IRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 IR + VLV +K A+ L E L G V +H++ +R ++ R G Sbjct: 372 IRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGS 431 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 VL+ L+ G+D V+LV D + S I IGR R G+AI + Sbjct: 432 IWVLICTELMGRGIDFKGVNLVINYDFP-----PTTISYIHRIGRTGRAGRPGRAITFFT 486 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 + S + I + E+ + + + K + A + K R Sbjct: 487 QEDTSNLRGIALIIKNSGGTVP---EYMLQMKKVRKSEAKMRAKEP---LDREDISTKIR 540 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLM-MQHAQNLEFEEAAQIRDQLHQLREL 668 P + D K +++ L+ + N + ++ I+ +L + Sbjct: 541 PETKGDEKHKSTKLKKVERTEKILKNRKGYEKDLNSKQKKLGNIKTELKPAGKR 594 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 98/660 (14%), Positives = 200/660 (30%), Gaps = 61/660 (9%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ + L G +T G+ G+ + +A + L+ P + +A ++ A L ++ Sbjct: 29 RPFAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLS 87 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVV 137 F +P+ + + S + RL A + + R Sbjct: 88 FFLGGQGSLLAP-------RVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPA 140 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +V SV A++ P + + + VG D+ ++ RRL + Y + GTF VR Sbjct: 141 LVLSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVR 200 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G+++D+F D +R+E F + +E + FDP + + V + + P + E Sbjct: 201 GDLLDVFSPLYDK-PVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETR 259 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 +A + + L +L + L+ + E G+E Sbjct: 260 PRAESAARAV---------ADRINLPTIKL----REQLDALREGLPGFGMEGLLPGFFED 306 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 G L D+ P ++ +D+ + + + R E L Sbjct: 307 GLSTVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPLEHF 365 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE----VRPVATQV 432 L E+ Q + L + + V G + E + Sbjct: 366 LSREDVN----QRMQSFRVLEGGGLSLAQTE-RPPVHFSFGGTQDLREAILAHHGEEGAL 420 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L+ + + + +V T A+ L L + V+ E +E L Sbjct: 421 SPLVERLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVKV------HTEPLEDAVAL 474 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + + G L + D + G R R+ A Sbjct: 475 YEPSIRAHLFTGEVSHGFVDGPGGLAVLADEEIFGARA--------RRRPKRSKKLDAF- 525 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 K +Y + G+ + + G++ Sbjct: 526 ---GSGFGDLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMR 582 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 + D + + +L + + E+ ++ +L Q+ A Sbjct: 583 LIQKFSGGDPTQVQL---------DKLGTTSWEKTKKRVKEQLLKMAAELLQIAAARKAH 633 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 128/475 (26%), Gaps = 39/475 (8%) Query: 203 FPAESDDIALR-VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 P + R F+ + E D P V + Sbjct: 633 HPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEV 692 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A + Q + + + + Sbjct: 693 AMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEV-ISGLKKAPEV---- 747 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + + ++ +H + G + L + + + Sbjct: 748 -REILKRAKEGKVDILIGTHKLL--------GGEVAFKELGLMIVDEEQRFGVKQKESLK 798 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIR 440 + ++ATP L S V D + T D V D ++ I Sbjct: 799 KWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIE 858 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFD 498 + A +V + L +V H + + +++ ++ Sbjct: 859 REVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQ 918 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VL+ +++ G+D+ + + + AD+ G + L Q GR R+ Sbjct: 919 VLLCTSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRSKERAYAYLLVPS- 973 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 +A+ + +RR + + E G G + D+ G + Sbjct: 974 ---RRAVTKDAQRRLEVLQNFTELG---AGFSIASHDLEIRGAGNLLGDKQSG------- 1020 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELFI 670 + DM + L++ + E++G + + A D + + + + Sbjct: 1021 AIAEIGFDMYAQLLEEAVAEMQGQPPKVQIEPDVTLPMPALIPDDYVSDVHQRLV 1075 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 61/421 (14%), Positives = 123/421 (29%), Gaps = 35/421 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L + + + + I+ A + + Sbjct: 571 DQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQ 630 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q ++ + + L + L + +V +H + + Sbjct: 631 QHYNTFIQRLKDFPV------RIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKD 684 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + ++ATP L S Sbjct: 685 VTYKDLGLLIIDEE--------QRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIG 736 Query: 408 VVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 + D V +D + V + + I + + +V D+ + Sbjct: 737 IRDMSVLEEAPMDRMPIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRV 796 Query: 467 EEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 ++ G V + H + E +I+ D GE DVLV ++ GLD+ + + I DAD Sbjct: 797 QKLVPGASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDAD 856 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + L Q GR R+ + K + E +R + + G Sbjct: 857 RFGLSQ----LYQLRGRVGRSSRMAYAFLLYRRD----KLLKEVAEKRLAAIREFTDLG- 907 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G+ + D+ G +A+ V D+ K L + + EL+G Sbjct: 908 --SGIKIAMRDLEIRGAGNLLGEAQSG-------HMAAVGYDLYCKMLNEAVKELKGEKE 958 Query: 645 Q 645 + Sbjct: 959 E 959 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 21/243 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF ++ + + + + G S KT + + + +++ ++ Sbjct: 3 AFLEPLEELADYQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYR-VIVFSSEEK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q Y E K P+ D + R+ K Sbjct: 62 AKQAYEEYKMLEEN---------------TFLYPAKDLLFYHADIKGAALTGKRMEVLKK 106 Query: 130 ML---ERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V V+ + A + GL + + + + G +ID + + L L Y R Sbjct: 107 LTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERES 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + + IYP Sbjct: 167 QIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYP 225 Query: 246 KTH 248 T Sbjct: 226 ATE 228 Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 79/245 (32%), Gaps = 33/245 (13%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L ++++ RV++ + ++ A+ L E L ++ Y Sbjct: 331 VNPYNNSFEMLTQDLKKLKRQGYRVILVSGSRTRAKRLAEDLRDYDLSSFYS-------- 382 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +++R +R GE ++V + EG + P + + I ++D G + +R Sbjct: 383 -EDMVRTVRPGE--IMVVYGCVAEGYEYPMLKFMVISESDIFGKRKKKRRRK-------- 431 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+ I + K Y + + + + I Sbjct: 432 VYEGQKI-----QEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISY------ 480 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 A G + D + A K+++L ++ + I L + Sbjct: 481 ---ADGGILYILATQMDLIQKYAGADAKPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVE 537 Query: 665 LRELF 669 L + Sbjct: 538 LYAVR 542 >UniRef50_D0N7S6 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7S6_PHYIN Length = 709 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 37/452 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + +++++ + R F I + Sbjct: 268 YKEPTSVQMQAIPSLLLR-RDVLATAPTGSGKTAAFAIPILANLAAGSGTSSG-----IR 321 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMM--NELGYCSGIENYSRFLSGRGPGEPPP 323 + L E RL + + ++ + ++ P Sbjct: 322 SIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKLAVNHDVLIATPL 381 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L + + + V + + + + + F Sbjct: 382 RLVHLIQESKVDLSTVEMVCLDEADRLLELGFVEQVDEI----------------FAACT 425 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVDDLLSEI 439 Q SAT E + + D V G + I + + + L + Sbjct: 426 HPKVQRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQKLVFVGKEEGKLVAM 485 Query: 440 RQRAAINERVLV--TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +Q ++ K A +L L G + +H+D +R ++IR R GE Sbjct: 486 KQLLQQGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEV 545 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 VL+ +L+ G+D V++V D +S S I IGR R GKA+ + Sbjct: 546 WVLICTDLMSRGMDFKAVNMVINYDFP-----QSAVSYIHRIGRTGRNGRKGKAVTLFTE 600 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + I + + + ++K+ + A G R Sbjct: 601 DDMVYLRTIANVMKISGCEVPDW-MLSLKKASVSKRKELLKAPPMRHRINTVSGYDLQRA 659 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 +PK ++ + A+ Sbjct: 660 NRLKQMKQGKTTPKKDGEQSESDPAKLEASAK 691 >UniRef50_C1E0H4 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E0H4_9CHLO Length = 523 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 62/430 (14%), Positives = 110/430 (25%), Gaps = 48/430 (11%) Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 + D + R P + I + + + + Sbjct: 72 GFESMDILPEVFRAIKRKGYRIPTPIQRKAIPVAL--------SGADVVAMARTGSGKTA 123 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 F I ++ + L Q L++ T Sbjct: 124 AFLIPVLHKLRQHS------LKAGARAVVLSPTRELALQTYKFAQELSKFTDL------- 170 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRAR 357 G+ FD L ++ L+V + + + + Sbjct: 171 ------------RCVCVVGGDSMEAQFDDLASNPDLLVATPGRLLHHVEEISGFSIRSVS 218 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 L E L ++ + A Q + SAT + E + D V Sbjct: 219 HVVLDEADRLLEMGFADQLRDIMKQVADQRQCLLFSATMPSALAEFVRVGLKDPQVIRLD 278 Query: 418 -------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 L V ++ LL +R+ N++ +V T T+ E L LE G Sbjct: 279 AEMKVSPDLKLSFTVMRQDEKIPSLLFFLREVVPENQQTVVFTATRHHVELLVTVLESEG 338 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V ++ +D R I R + V+V ++ G+D+P + V D Sbjct: 339 ITVSAVYGSMDMAARKLHIGKFRNRKTSVMVVTDVAARGIDIPLLDNVVNFDFP-----P 393 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + +GR AR G A K + R Sbjct: 394 RPKLFVHRVGRVARAGRTGVAHSLLVKEEMGFLVDLHLFLGRSLVAAPVKPPESRDEARQ 453 Query: 590 NKKVVDILAL 599 D Sbjct: 454 IADEADEAQR 463 >UniRef50_Q7Q7E5 AGAP005351-PA n=2 Tax=Culicidae RepID=Q7Q7E5_ANOGA Length = 640 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 99/377 (26%), Gaps = 40/377 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR--KVLLE 276 E ++ L T + V + + L Sbjct: 95 EIIDELRYAGFTTPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALIHIDQQPRLR 154 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + T+ + + ++ G + G D L +V Sbjct: 155 RGDGPIA-LILAPTRELAQQIKQVADDFGR-ALKYKNTCLFGGGKKRKQQDDLEYGVEIV 212 Query: 337 VDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + I + R L E L + + E QT+ SAT Sbjct: 213 IATPGRLIDFLSSNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDRQTLMWSAT 272 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE 447 + + D G L II+V + L +R+ A E Sbjct: 273 WPDIVARLVKDYLKDYAQINVGSLKLAANHNILQIIDVCQEYEKESKLSILLREIMAEKE 332 Query: 448 -RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + ++ TK+ +D+T ++ G R +H D ER + Sbjct: 333 CKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDATLN---------------- 376 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 + +V V D + I IGR R N G A + S A+ + Sbjct: 377 ----YVDDVKFVINFDFPT-----TSEDYIHRIGRTGRCNNTGTAYTFFTPNNASKARDL 427 Query: 566 GETERRREKQQKYNEEH 582 + + ++ Sbjct: 428 IDVLKEAKQVINPKLVE 444 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 85/663 (12%), Positives = 199/663 (30%), Gaps = 87/663 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 Q A + L + G + + + + + + LQ+ +V+ PN+ Sbjct: 2 KKIDEILKQNPAFKTLLK----GEGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A LY ++ +++ + P +++ + + + + R+ A Sbjct: 56 EANLLYQQISLINEKDS--------------LFFPVDESYRIEALASSPELLGQRIDALY 101 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + +++ A+ L+L L+L GM ID + + L + Y + Sbjct: 102 QLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q F RG VID+F + D LR+E FD+E++ + ++ + + + + TI P + Sbjct: 162 DQPFYFSKRGGVIDVFSIQYD-NPLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + + +I + + + L E + +++ + + G Sbjct: 221 DILYDEQEVPAVLSKINDLRDRQIEELDELYQEDYLSKVSIDQENLRN-HDTSFTMYGYF 279 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 N + L DYL L++ +H + + L Sbjct: 280 NLFNQTAS---------LLDYLDT-PLIIQANNHDINFAYKNYLEENHYYYQEL--ASIG 327 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 N E A L + + II Sbjct: 328 KTIKGLNLFRDLYEVIDRKSVNFKPFAQSDKDVLFNARAIM-----INNDDEAMIINQIR 382 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ ++ + + + ++ L G + ++ ++ Sbjct: 383 AYLKLSKVVVALDDDHQLKLMTELF-----DRHEMAYTL--IGIK-DEIYPGLN------ 428 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + +N + G+++ + +V I + ++ Sbjct: 429 -------------IAVNKIGFGIELVDEKIVIISANELFKTRNIKKP-----------KY 464 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K +Y + QG +K + + G + Sbjct: 465 FKYKNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVAYAGDDTLYIP 524 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + R S + KI++L G Q + + I D+L ++ Sbjct: 525 VEQFKMIRK---------YSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIADKLIEIYS 575 Query: 668 LFI 670 I Sbjct: 576 ARI 578 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 65/477 (13%), Positives = 138/477 (28%), Gaps = 45/477 (9%) Query: 203 FPAESDDIALRVEL-FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 P + ++L F+ D L P + + Sbjct: 580 QPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEV 639 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A Q + + + L+ + Sbjct: 640 ALRAAFKAILGNKQVAFLCPTTILSMQHYKTMIARFKDFPV------KIALLNRFTSTKE 693 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + L + ++ +H + + + + + + Sbjct: 694 KKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLLCIDEE--------QRFGVKQKEKIK 745 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIR 440 + ++ATP L+ S + T + V + + L+ I Sbjct: 746 EYRKTIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIE 805 Query: 441 QRAAINERVLVTTLTKRMAEDLTE--YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + A + +V ++ L G RV H +D E +++ EF+ Sbjct: 806 RELARDGQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFN 865 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ G+D+P + + + DADK G + L Q GR R+ G Sbjct: 866 VLVCTTIIETGIDIPNANTIIVEDADKFGLSQ----LYQIKGRVGRSNRGAYAYLLY--- 918 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + K + E +R K K E G G + D+ G + Sbjct: 919 -NPTKVLNEEASKRLKAIKEFTELG---SGYKIAMRDLAIRGSGDILGGTQSGF------ 968 Query: 619 EPDNVPMDMSPKALQQKIH-ELEGLMMQHAQNLE--------FEEAAQIRDQLHQLR 666 D++ +M K LQ I+ ++ ++ + ++ + + + +L Sbjct: 969 -IDSIGFEMYMKILQDAINEKMGKEDVEAEKEIKSVNVKVDGYIPHDYVSSDIEKLE 1024 >UniRef50_Q978T9 ATP-dependent RNA helicase n=3 Tax=Thermoplasma RepID=Q978T9_THEVO Length = 373 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 58/395 (14%), Positives = 113/395 (28%), Gaps = 46/395 (11%) Query: 192 TFRVRGEVIDIF--PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 F +R E+I+ S+ ++ + S + + I + Sbjct: 6 EFNLRNELIESIRGTGYSEPTEVQSMAIPIAL-AGSDLVVRSKTGSGKTAAYLIPIINN- 63 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 A E+ L L + + ++ G + Sbjct: 64 --------TAKEKGIRALILLPTRELAVQVAKVSE-ALGKRSGIRTVVVYGGVSINKQIE 114 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P D + L S+ + + M Sbjct: 115 LILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLD----------------- 157 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPI 422 K + Q+ SAT + +E + G + ++ + +D Sbjct: 158 MGFIEDIKKIINVLPVERQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHN 217 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 V ++ L S I + E+ ++ + TK A + E L HG+ +H D+ Sbjct: 218 YAVSRRERKLRTLFSYIDKYK--PEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQ 275 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R + + + LV N+ GLD+ +S + D R + +GR Sbjct: 276 AQREKALYRFKNF-GRFLVATNVAARGLDIGGISDIINYDVP-----DDPRVYVHRVGRT 329 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 AR G+A + I R + K+ Sbjct: 330 ARMGAAGRAFTIVEDREIGSIDMIRHEARVKMKEI 364 >UniRef50_C7DZC6 Vasa4 (Fragment) n=2 Tax=Acyrthosiphon pisum RepID=C7DZC6_ACYPI Length = 354 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 96/342 (28%), Gaps = 32/342 (9%) Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + L + +L + T + G + P Sbjct: 19 PQVVIMAPTRELAVQIKMVVLKLARGTG-ISSFVCYGGTLVSHQKNQILKGCHILVATPG 77 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L +++ + + ++ M D + F +PS + Sbjct: 78 RLNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHFSMPSVM----------- 126 Query: 384 ALAPQTIYVSATPGNYELEKSGGDV-VDQVVRPTG-------LLDPIIEVRPVATQVDDL 435 QTI +SAT + + + + + G + + + D L Sbjct: 127 --DRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNKRDIL 184 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 S +++ + +V K A+ L YL E +H D +R + D R Sbjct: 185 TSILKK---DSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRTR 241 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + +VLV + GLD+ V+ V D +Q IGR R G A Sbjct: 242 KMNVLVATTVAARGLDIKCVNHVLNYDMPLV-----IEEYVQRIGRTGRLGNKGIATSLF 296 Query: 555 DKITPSMAKA-IGETERRREKQQKYNEEHGITPQGLNKKVVD 595 D + I ++ N Sbjct: 297 DPDEDYLLVDPIISILASANQEIPNWLLKLGREARYNDDFDK 338 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 103/694 (14%), Positives = 201/694 (28%), Gaps = 93/694 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLED---GLAHQTLLGVTGSGKTFTIANVIA---------DL 56 + + + + +I R+ E + +G + +A V D Sbjct: 75 NGLRAALREDPSIARVRAHAEREHAKRSEDLQIGAPNGLRAPLLAEVAEGLAAAQANGDH 134 Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 + + + L ++ + PE+AV PS +T + S Sbjct: 135 AGVVLAVTATSRESEDLVAALRAYLPEDAVAD-------------FPSWETLPHELLSPR 181 Query: 117 EHIEQMRLSATKAMLERRDV------VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + +VVA V A+ L + L++G Sbjct: 182 SDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIVQGLADLEPVELSIGQRAPFD 241 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 ++RRLA+ YAR D RG F VRG +ID+FP +D +R+E F +E+E + F Sbjct: 242 QVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWFAVA 300 Query: 231 TGQ-------IVSTIPRFTIYPKTH-YVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + + P +TP + A + AA + +E Sbjct: 301 DQRTLTSISGTIEHPKALFAPPCRELLITPEVQSKAAKLKDSFPAAAAMLEKIAGGIAVE 360 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + ++ + E P + + + Sbjct: 361 GM------ESLTPVLVDSMVPVVAEFPP---GSIAVVLEPER----VRGRAHDLEATNEE 407 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + A L ++ + VSA + Sbjct: 408 FLEAAWSTASDGGAAP--LDVSQTLASASFASLAQTRGAALRAGVSWWSVSALGIDD--- 462 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-----ERVLVTTLTKR 457 + V +P R V ++L I R N RV+V T Sbjct: 463 ---ETAPELDVLSVPAREP----RGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPG 515 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 A+ L E + + S + + + II V + G + + + Sbjct: 516 PAQRLAELFHDADIPTARVDSLDEQPQ-LGIIE----------VTTAAVGHGFVLDGLKI 564 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 + +AD G + + R + A+ R + + Sbjct: 565 GLLTEADLLGRSSASGT---KDMRKMPSKRRNAVDPLQLRGGDFVVHEQHGIGRFLELIQ 621 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 + +++ + + +K A G P + D + + + Sbjct: 622 R----KVAGTDGSREYLVLEYA---PSKRGAPGDRLFVPTDQLDQITAYVGGD--APALS 672 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 ++ G +N + +I +L +L +A Sbjct: 673 KMGGSDWASTKNKARKAVKEIAGELIRLYSARMA 706 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 65/473 (13%), Positives = 128/473 (27%), Gaps = 39/473 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S D + EL +E + D LT P V+ + ++ Sbjct: 712 FSADTPWQREL-EEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRA 770 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 A + + Q + E + + + G+ Sbjct: 771 AFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRFQS------GKEAKET 824 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + + + VV +H + + + + + Sbjct: 825 AEGVANGSIDVVIGTHRLLSKDFAFKDLGLVIVDEE--------QRFGVEHKEQLKKMRN 876 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAA 444 + +SATP LE S + + T + + V + IR+ Sbjct: 877 NVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRRELM 936 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V E + ++++ H + +II D FDVLV Sbjct: 937 REGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVC 996 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ GLD+ + + + ADK G + L Q GR R + Sbjct: 997 TTIIETGLDISNANTLIVDGADKYGLSQ----LHQLRGRVGRGRERAYAYFLYPAEKP-- 1050 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 ++ K H G+ + D+ G + Sbjct: 1051 -----LGEVALERLKAVAAHNELGAGMQLALKDLEIRGAGNLLGGEQSG-------HIAG 1098 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFIAA 672 V D+ + + + + + G A +++ E A D + R A Sbjct: 1099 VGFDLYIRLVGEAVADYRGETEDKAADMKIELPVNAHLPHDYVPGERLRLEAY 1151 >UniRef50_C5YS52 Putative uncharacterized protein Sb08g003560 n=1 Tax=Sorghum bicolor RepID=C5YS52_SORBI Length = 531 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 48/409 (11%), Positives = 115/409 (28%), Gaps = 35/409 (8%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV--------------TPRERIV 257 LR+E +++ ER + + ++ + + Sbjct: 104 LRMEAANKDPERGHTL--RSQRSCYYTLQYDPPRMQLVIDVGSSLNLDLTCEGMDLIALA 161 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 Q A L ++ + T+ + E G G Sbjct: 162 QTGSGKTAAFALPILQALLEHRRPFFACVLSPTRELAIQIAEQFEALGSAIGLVCSVLVG 221 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNR 375 + + L ++V + + + ++ + L E L + Sbjct: 222 GVDRMQQVIS-LARHPHIIVATPGRLLDHLTDTKGFSLNKIKYLVLDEADVLLDMEFEKS 280 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + +T SAT + L + P + L Sbjct: 281 LNDILKVIPKERRTFLFSATMTDKLKVSCKYS-------TVDTLREEFYLVPANDKDCCL 333 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + +++ T T + L L G +++ + +R+ + + Sbjct: 334 VYVLNKI--PGSMIMIFTETCYSSRLLALMLRNLGFEAIFINGKMSQDKRLGALNRFKSK 391 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYG 554 +++ ++ GLD+ V +V D S +S + +GR AR +G A+ Sbjct: 392 GCNIITCTDVASRGLDIQGVDVVINYDIP------SLKSYVHRVGRTARAGQSGYALSLV 445 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 ++ K I + + + + +E + I + Sbjct: 446 NQYEVLRFKYIEKLLGKEISKSEVDECELKILKECVCDSKRIALKVKGD 494 >UniRef50_C4QLH4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4QLH4_SCHMA Length = 454 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 61/363 (16%), Positives = 108/363 (29%), Gaps = 19/363 (5%) Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 S I I + + A L + + T+ Sbjct: 27 PSEIQLKAIPAALRK-KDIVGLAETGSGKTAAFAIPILQDLLSKPRHNFALILTPTRELA 85 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLF-DYLPADGLLVVDESHVTIPQIGGM--Y 351 + L G + + + G+ D ++V + + Sbjct: 86 LQVKCLFMELG-DKFGLKVVCLVGGQHVEDQVRDLKRLKFHVIVGTPGRVVYHLENTKEL 144 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 R + R L E L + + QT SAT + Sbjct: 145 RLNHVRYFVLDEADQMLEDTFEQQLAFIITKLHPNKQTFLYSATMTQNVDKIRKVCTKSP 204 Query: 412 VVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLT 463 V+ LD P + L+ + + ++ R ++ T T R + + Sbjct: 205 VILEVSSKYSKVDKLDHAFVFIPDKEKDFYLIYLLLSSKSADKSRSIIFTSTWRESFRIV 264 Query: 464 EYLEEH--GERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 L+ L+ + +R + D R G +LV +L GLD P+V LV Sbjct: 265 AMLKSLADVISAASAPLNGVMQQDKRQSSLFDFRTGRVSILVATDLASRGLDFPDVDLVI 324 Query: 520 ILDAD-KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + S ++ I +GR AR G+AI + + + KAI R Q Sbjct: 325 NYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRAITFVTPYSVTRLKAIESALNERIPQLP 384 Query: 578 YNE 580 + Sbjct: 385 WPG 387 >UniRef50_Q0BUS0 ATP-dependent RNA helicase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BUS0_GRABC Length = 731 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 54/397 (13%), Positives = 103/397 (25%), Gaps = 30/397 (7%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKV---LLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + LA L + + +++ EL + Sbjct: 81 RDLLVSAQTGSGKTVAYGLALADTLLGADERLGQAGAPLALIVAPTRELAMQVQQELLWL 140 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLV 362 G + G L +VV +G R R L Sbjct: 141 YGP--AGARVVSCIGGMDARREAQALERGCHIVVGTPGRLCDHLGRGRLNLSRLRAVVLD 198 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT------ 416 E L + + + +T+ SAT + + + T Sbjct: 199 EADEMLDLGFRDELEEILDATPAERRTLLFSATIAREIAALAKRYQTNALRIDTVSRNKP 258 Query: 417 -GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 +D + +++ +R A +V T+ L E G Sbjct: 259 HADIDYRVVRVLPHEARHSVVNVLRFYDAPI--AMVFCGTREEVRHFQASLMERGFSSVA 316 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L ++ ER + LR G+ V V ++ GLD+P + LV D + +L Sbjct: 317 LSGELSQTERSRALHLLREGQARVCVATDVAARGLDLPALDLVIHADLPT-----NSATL 371 Query: 536 IQTIGRAARNVNGKAILYGDKITP-SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + GR R + + A + T R + I+ + + + Sbjct: 372 LHRSGRTGRAGRKGVSVLIAPVNRQRKADQLLHTAGIRAEWTPVPTVEEISIRDRERMLE 431 Query: 595 ---------DILALGQNIAKTKAKGRGKSRPIVEPDN 622 D I + ++ Sbjct: 432 SPALSAPISDDEREAARILMEGRDAEALAVAVLRLHR 468 >UniRef50_Q8NHQ9 ATP-dependent RNA helicase DDX55 n=124 Tax=Fungi/Metazoa group RepID=DDX55_HUMAN Length = 600 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 59/442 (13%), Positives = 120/442 (27%), Gaps = 45/442 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ R F I + E++ ++ + Sbjct: 33 TPVQSATIP-LFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVG---AIII 88 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE-NYSRFLSGRGPGEPPPTLFDY 328 L T+ +++ G G + + G P L D Sbjct: 89 TPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDM 148 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + + L E L + EF + Sbjct: 149 FRRKA------EGLDLASCVRSLD-----VLVLDEADRLLDMGFEASINTILEFLPKQRR 197 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTG--------------LLDPIIEVRPVATQVDD 434 T SAT + + V L+ V + + Sbjct: 198 TGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQ 257 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE--EHGERVRYLHSDIDTVERMEIIRDL 492 L+ +R + LV T E + LE G ++ +H + +R +I + Sbjct: 258 LVHFLRNHKQE--KHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKMK-YKRNKIFMEF 314 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R + +LV +++ G+D+PEV+ V D + + + GR AR + G A+ Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPP-----SNASAFVHRCGRTARIGHGGSAL 369 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 ++ + S + ++ ++ K L K+ + + + + K Sbjct: 370 VFLLPMEESYINFLAINQKCPLQEMKP----QRNTADLLPKLKSMALADRAVFEKGMKAF 425 Query: 612 GKSRPIVEPDNVPMDMSPKALQ 633 + K L Sbjct: 426 VSYVQAYAKHECNLIFRLKDLD 447 >UniRef50_Q9FNM7 DEAD-box ATP-dependent RNA helicase 26 n=12 Tax=Embryophyta RepID=RH26_ARATH Length = 850 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 50/475 (10%), Positives = 123/475 (25%), Gaps = 69/475 (14%) Query: 165 MIIDQRAI-LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 + L+ + + + + + + + + Sbjct: 385 DQFPLSPLSLKAIKDAGFETMTVVQE------------------ATLPI--------ILQ 418 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 F + + + + L L + E Sbjct: 419 GKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEA 478 Query: 284 QRLTQRTQFD-LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD---GLLVVDE 339 L + ++++ + + + P L D++ ++ Sbjct: 479 NTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGV 538 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + + + QT SAT Sbjct: 539 KVLVLDEADHLLD-----------------MGFRRDIERIIAAVPKQRQTFLFSATVPEE 581 Query: 400 ELEKSGGDV-VDQVVRP-----TGLLDPIIEVRPVATQVDD---LLSEIRQRA---AINE 447 + + D +G + + +D LL + + ++ Sbjct: 582 VRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDY 641 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V++ T + + + L + VR +HS R + + R + +LV ++ Sbjct: 642 KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSA 701 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 G+D P+VSLV G I +GR R G+ +L ++ Sbjct: 702 RGVDYPDVSLVVQ-----MGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFMSSVK 756 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + + + K + + + A G KS+ ++ D Sbjct: 757 DL---PITKSPLPPIDPEAVKRVQKGLSQVEMKNKEAAYQAWLGYYKSQKMIARD 808 >UniRef50_D1HIP4 Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HIP4_VITVI Length = 521 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 47/371 (12%), Positives = 99/371 (26%), Gaps = 34/371 (9%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 + + + G V + + +V + ++ + L L Sbjct: 138 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICH 197 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRF-LSGRGPGEPPPTLFDYLPADGLLVVDES 340 E +R + + G I P + L + + Sbjct: 198 EFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLALKNVR 257 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 H + + M + + + Q + SAT Sbjct: 258 HFILDECDKMLE----------------SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 301 Query: 401 LEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + D + + L + +V++ Sbjct: 302 RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIF 359 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 + A +L + L E +HS + ER+ + + G +LV +L+ G+D+ Sbjct: 360 VKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDI 419 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK-ITPSMAKAIGETER 570 V++V D S + + +GRA R G AI + + + E Sbjct: 420 ERVNIVINYDMP-----DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFE 474 Query: 571 RREKQQKYNEE 581 K+ + Sbjct: 475 VDIKELPEQID 485 >UniRef50_Q9SB89 DEAD-box ATP-dependent RNA helicase 27 n=1 Tax=Arabidopsis thaliana RepID=RH27_ARATH Length = 633 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 51/424 (12%), Positives = 118/424 (27%), Gaps = 24/424 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L D + + + + + Sbjct: 159 LSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYR 218 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + + + T+ + ++ +S+ + GE T + L Sbjct: 219 VKFTPRNGTGVLVICPTRELAIQ-SYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGV 277 Query: 334 LLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 L+V + + + + + E L + K QT Sbjct: 278 NLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSL 337 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGL---------LDPIIEVRPVATQVDDLLSEIRQR 442 SAT + + + V L+ V P A ++ LL+ +++ Sbjct: 338 FSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRF 397 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++++V T + + E + ID +R E +L+ Sbjct: 398 QGK-KKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLC 456 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR--NVNGKAILYGDKITPS 560 N+ GLD P V + D + I +GR AR GKA+L Sbjct: 457 TNVAARGLDFPHVDWIVQYDPP-----DNPTDYIHRVGRTARGEGAKGKALLVLTPQELK 511 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + + + + +E + V ++++ + ++ + + Sbjct: 512 FIQYL----KAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDS 567 Query: 621 DNVP 624 ++ Sbjct: 568 HSMK 571 >UniRef50_D0N9A9 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N9A9_PHYIN Length = 758 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 56/506 (11%), Positives = 134/506 (26%), Gaps = 69/506 (13%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + F + + + + Sbjct: 153 KPTPIQQRAIPIAL-TGKDICASAQTGSGKTAAFLLPILERL-----QFRSRRVQSTRVM 206 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L ++L R + G + P + D Sbjct: 207 IICPVRELATQCQSMLEQL-ARFTDITCSLAVGGLPLKAQEAELRNRPDVVVCTPGRMID 265 Query: 328 YLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 +L + + D + + + + L+ + Sbjct: 266 HLRNSKSVHMDDLEILVLDEADRLLELG-----------------FTEEVLELVRMCPVQ 308 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL--------LDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + V T + + +RP + + Sbjct: 309 RQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILL 368 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +V TK A + G + LH ++ ER+E ++ R G D Sbjct: 369 ALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVD 428 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 VL+ ++ G+D+ V V + + + + +GR AR G+A+ + Sbjct: 429 VLLCTDIAARGIDVRGVHAVINYEMP-----KDITTYVHRVGRTARAGRNGRAVTLTSES 483 Query: 558 TPSMAKAIGETERRREK------------QQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + + K + + ++++ ++ Sbjct: 484 RRLVMKQVSRHCQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLEKRMREAEKEA 543 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ-----------------HAQ 648 T+A K R + + ++ ++E + A+ Sbjct: 544 TRATNLLKHRDEINARPARTWFMSEKEKKNVNERAEEDRRAKEEAAKEEAESADTMSRAK 603 Query: 649 NLEFEEAAQIR-DQLHQLRELFIAAS 673 L+ + R ++ + E +A + Sbjct: 604 KLKLMSHKKRRLFEIREREERMLADA 629 >UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Trichomonas vaginalis RepID=A2DVG1_TRIVA Length = 478 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 122/383 (31%), Gaps = 26/383 (6%) Query: 213 RVELFDEEVERLSL--FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 +++L ++ + F + I H + + + Sbjct: 95 QMDLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGK----TGAFSIG 150 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 ++ ++ + + T+ + + G ++ G + D Sbjct: 151 VLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGA--QRVVDAQA 208 Query: 331 A---DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + + + I G R + L E L + E+ Sbjct: 209 RAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPED 268 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEI 439 Q + SAT + D + + D L +I Sbjct: 269 VQILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLLDI 328 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +I ++ ++ +K + ++E L++HG V +H+ +D +ER I+RD R G V Sbjct: 329 YGSVSI-QKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTARV 387 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ +LL G+D+ +V+LV + + I IGR+ R G AI D Sbjct: 388 LISTDLLARGIDVQQVTLVINFELP-----KKLEQYIHRIGRSGRYGRKGVAINICDHED 442 Query: 559 PSMAKAIGETERRREKQQKYNEE 581 ++ + + + + E Sbjct: 443 MNVIEMLKNHYMTTINELPSDIE 465 >UniRef50_Q6MHS8 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHS8_BDEBA Length = 549 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 49/397 (12%), Positives = 99/397 (24%), Gaps = 54/397 (13%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY-----VTPRERIVQAM 260 D ++ + ++ L F I + Q Sbjct: 21 YDDCTPIQEQAIPPVLDG-KDVAGLAQTGTGKTAAFVIPVMERILRARPIQGEVTEEQKA 79 Query: 261 EEIKEE----------LAARRKVLLENNKLLEEQRLT--QRTQFDLEMMNELGYCSGIEN 308 K L L +L+ + G + Sbjct: 80 LIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSGLRGFA---IYGGTGYDKQK 136 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + P L D + + + + M+ Sbjct: 137 EALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD---------------- 180 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDP 421 + + Q + SAT L + V + Sbjct: 181 -MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKD 239 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I + LLS ++ ++ ++ T K E + ++L E+G + S + Sbjct: 240 QIFHVGSDEKPQHLLSLLK--VHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLT 297 Query: 482 TVERMEIIRDLR-LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R +I + + +VLV ++ GLD+ V +V + S + IG Sbjct: 298 QAQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPM-----DSESYVHRIG 352 Query: 541 RAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 R R G+A I + + + + Sbjct: 353 RTGRAGTTGQAFSLVGDKDIESLGRIEDYLKHKIEIG 389 >UniRef50_A4S294 Predicted protein n=4 Tax=Viridiplantae RepID=A4S294_OSTLU Length = 723 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 50/480 (10%), Positives = 121/480 (25%), Gaps = 75/480 (15%) Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 R P ++ + + + + + + H Sbjct: 130 ELIRRSGFEKPMPIQAQALPV--------IMSGRDCIGVAKTGSGKTLAYILPMLRHINA 181 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + L + +R + + G + Sbjct: 182 QEPLASG---DGPIGMIMGPTRELVTQIGKDCKRYGKAMG-FSAVSVYGGSGIAAQIGDL 237 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 P + D L G + R L E Sbjct: 238 KRGAEIVACTPGRMIDLLTTGS--------------GKITNLRRVTYMVLDEADRMFDMG 283 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIE 424 + + + QT+ SAT + + + + + G ++ ++E Sbjct: 284 FEPQITRILANLRPDRQTVMFSATFPHTMEALARAALDNPIEIQIGGKSVVNSDIEQLVE 343 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 +RP + +L + + ++++ ++ A+ Sbjct: 344 LRPEEDRFLRVLELLGEWYERG-KIIIFVASQDKAD------------------------ 378 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 I D + ++LV ++ GLD+ ++ LV D + +GR R Sbjct: 379 -STTISDFKSDVCNILVATSVAARGLDVKDLRLVINYDTPNH-----LEDYVHRVGRTGR 432 Query: 545 NV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G A+ + + A + + + ++ + + + D + Sbjct: 433 AGQKGTAVTFISEDEEKFAPDLVKALKESKQNVPQD----------VQAMADEFTRKRKE 482 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A G G + + D+ K + + + + E AA L Sbjct: 483 GLVGAAGSGFGGSGFKFNQEEQDLLRKQKRDAARAAGLDVDDGESDSDEEPAAHTPGALV 542 >UniRef50_UPI000186E757 ATP-dependent RNA helicase DDX54, putative n=3 Tax=Neoptera RepID=UPI000186E757 Length = 723 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 49/426 (11%), Positives = 115/426 (26%), Gaps = 20/426 (4%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE-LAARRKVLLENNKLLEEQRLTQRT 290 + I V ++ + L+ Sbjct: 50 PTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPKSRLGVRALILSPTR 109 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L+ + + G+ F + + ++V + M Sbjct: 110 ELALQTVKFIKELGKFTKLKAL--AILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEM 167 Query: 351 -YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + E + + + ++ QT+ SAT ++ + +V Sbjct: 168 ELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRLGVSRQTVLFSATLPKLLVDFAKAGLV 227 Query: 410 DQVVRPTGLLDPIIEVR------PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + V+ + I E+ + L + N + L+ TK E + Sbjct: 228 NPVLLRLDVETKIPEMLDLVYFSVKHDEKLAALLCLLNLLPKNTQTLIFVATKHHVEYIH 287 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + LE+ Y++SD+D R + VL+ ++ G+D+P++ V Sbjct: 288 KILEKANISSSYIYSDLDPTARKINAAKFQNKVCSVLIVTDVAARGVDIPQLDYVINYHF 347 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 + + +GR AR G A + ++ + Sbjct: 348 P-----AKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYIIDLHLFLGKKINLLDKTSKL 402 Query: 583 GITPQGLN---KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL-QQKIHE 638 + K D++ Q+ + + + + + K+ I Sbjct: 403 TTSCNAKEALGKIPSDVIESQQSELISWHHNDEEISNLEKVCDNGYKKYLKSRPGASIES 462 Query: 639 LEGLMM 644 L+ Sbjct: 463 LKRAKE 468 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 59/425 (13%), Positives = 117/425 (27%), Gaps = 35/425 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L + P + + I+ A + + Sbjct: 618 DQLRAIEETKTDMERTQPMDRLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQ 677 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q E M + + R + A + ++ +H + Sbjct: 678 QHLNTFRERMAGYPIAIEMVSRFRSR------ADQKKILTATAAGQVDILIGTHRVLQHD 731 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + +G + + + +SATP L + Sbjct: 732 VKFRDLGLVIIDEEQRFGVKHKEVF--------KQMRSTVDVLSMSATPIPRTLYLALTG 783 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDL-LSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 D V T + V T + L + +R +V + L Sbjct: 784 ARDLSVIETAPTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINLVAARL 843 Query: 467 EEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 E + H ++ + E++ + G + +LV ++ GLD+P + + I AD Sbjct: 844 RELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGAD 903 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + L Q GR R + A Y + R+R + + + G Sbjct: 904 RFGLSQ----LYQLRGRVGRFKHQ-AYAYLLLHRHTRLLD---VARQRLTAMRQHTQLG- 954 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G + V ++ + L+Q + L+G Sbjct: 955 --AGFRIAMRDLELRGAGNLLGAQQSG-------HIVGVGFELYCQLLRQSVARLKGEKT 1005 Query: 645 QHAQN 649 A Sbjct: 1006 AAAIR 1010 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 22/247 (8%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPT-MVLAPNKTLAAQLYGEMKEFFPENAVEY 88 A L G+T S + + + P +V+A + A +L + F + + Sbjct: 5 ATRARHKLTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPH 64 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------LERR---- 134 + + PE+ + D AS + +L AT+++ RR Sbjct: 65 AQTTLVF--PESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGAT 122 Query: 135 ---DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +V+V + A+ + + L+ G + +L RL +L Y Sbjct: 123 ALPPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAP 182 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G + +RG +ID++P + + R++ F +E+E + FDP+T + +T+ TI + Sbjct: 183 GHYAIRGGIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVR 241 Query: 251 TPRERIV 257 + Sbjct: 242 LDPSKTG 248 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 40/155 (25%), Gaps = 15/155 (9%) Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 LV + + + G R R + A R + S + Sbjct: 452 LVVVTETEVFGRQRQRRPALNPRAMAQRAQ------IDQLLDFSELVEGDFVVHLQHGIA 505 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 Y + ++V+ + P+ E + + + ++ Sbjct: 506 HYRGLTKLDTAQGVREVISLEF---------DDHVTLHVPLQESHLISRYVGLSKTKPQL 556 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + + A+ + +L +++ A Sbjct: 557 GRIGSGRWEKARLAAERATIDLAAELLRIQAAREA 591 >UniRef50_B0CQW8 Predicted protein n=4 Tax=Agaricales RepID=B0CQW8_LACBS Length = 450 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 68/439 (15%), Positives = 123/439 (28%), Gaps = 61/439 (13%) Query: 165 MIID-QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 D + L++ Y+ G + E Sbjct: 25 ERYDIPPHLFSNLSKCGYSHPTSIQSSGM------------------PVLFE-------- 58 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 ++ + + P ++ L L + E Sbjct: 59 SRDLAAISPTGTGKTLSYLFPVLSKLACPLSASQDPTKKGARALILAPTRELAHQIHNEC 118 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 RLTQ ++ + + ++ S R P L L + H+ Sbjct: 119 LRLTQGRKWRIVLFSKATANSLANKAVRDK-VDIIISTPLRLISSYQDGKLELNSVQHLV 177 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + + + Q SAT + Sbjct: 178 LDEADRLLDREFLPQVQEIVGACSFSG----------------IQKAVFSATLPAEIEKL 221 Query: 404 SGGDVVDQVVRPTGLLDP--------IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 + + + + GL D + V +++ LL+ + Q VLV T + Sbjct: 222 ALEMLRNPIRVVVGLKDTPLPLISQSLTYVADDPSKLPSLLAYLSQPYNPP--VLVFTSS 279 Query: 456 KRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + A L E L +G V LH+ + ER + I +R G+ VLV +L G+D Sbjct: 280 QPRATSLAEELVLNGISNVDCLHAGLTRKEREDTISRMRQGQSWVLVSTEVLARGMDFQG 339 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 V V D + +S + IGR R GKA+ + K I + Sbjct: 340 VREVINYDFPT-----TVQSYVHRIGRTGRAGREGKAVTFFTDEDGPYLKTIANVILQSG 394 Query: 574 KQQKYNEEHGITPQGLNKK 592 P + +K Sbjct: 395 YTVPDWILKLPKPSKMKRK 413 >UniRef50_Q5KIK3 ATP-dependent RNA helicase DRS1 n=2 Tax=Agaricomycotina RepID=DRS1_CRYNE Length = 808 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 50/441 (11%), Positives = 112/441 (25%), Gaps = 28/441 (6%) Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F D S + L + L+ + + Sbjct: 209 FSSDPTTTDPTLPSSFTA---MNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGS 265 Query: 253 RERIVQAMEEIKEELAARRK-VLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYS 310 + R + T+ + Sbjct: 266 AVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLD 325 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRL 368 + G L +++ I + + + E L Sbjct: 326 VRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRML 385 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------D 420 + + + + + QT+ SAT + E + + Sbjct: 386 EAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQ 445 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + +R ++ LL+ ++ + ++ +K +A + G + LH ++ Sbjct: 446 EFVRIRSDDSRSPSLLALCKRTIRE--KCIIFFRSKALAHQMRIVFGLFGLKAAELHGNL 503 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +R++ + D + G D L+ +L GLD+ V V D +G Sbjct: 504 TQEQRLQALNDFKAGTVDYLLATDLASRGLDIKGVETVINYDMP-----GQLAQYTHRVG 558 Query: 541 RAARNV-NGKAILYGDKITPSMAKAIGE-----TERRREKQQKYNEEHGITPQGLNKKVV 594 R AR G+++ + M KA + R R + + + Sbjct: 559 RTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQ 618 Query: 595 DILALGQNIAKTKAKGRGKSR 615 +IL + + + Sbjct: 619 EILKEEKEEKLLRQADMEIKK 639 >UniRef50_Q4N0E9 ATP-dependent RNA helicase, putative n=2 Tax=Theileria RepID=Q4N0E9_THEPA Length = 839 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 15/347 (4%) Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 I + + + + L + L+ Sbjct: 37 QRKTIPHILAGSDVLCIARTGSGKTVAYIAP-IVQLLDFHSPVVGVRCLILLPTRELALQ 95 Query: 296 MMNELGYCSGI--ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYR 352 + L ++ + +S G+ + F L + +V+ + + Sbjct: 96 VEGVLKKFVNFSNQDDALRVSLLIGGKSVESQFGSLSFNPDIVIATPGRLVYHLEQKSLT 155 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + E K + Q I VSAT E + + V Sbjct: 156 LSLLTHLVIDEADKLFEMGFLPDVYKVFAYLPKIKQVILVSATLPTQLSEFVSFGLNEPV 215 Query: 413 VRPTG---LLDPIIEVRPVATQVDDLLSEIRQRAAINE--RVLVTTLTKRMAEDLTEYLE 467 + ++ +++ + ++ ++ +S + + A ++ + +V T+ E L Sbjct: 216 LAKLDQDQHINEQLQMSFIFSRNEEKISVLLRLLAKHKDLKTIVFVATRHHVEFFRTLLL 275 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + G + ++ +D R+ + R + +L+ ++ GLD+P V LV D Sbjct: 276 KLGYSISCVYGTMDMDNRVIEMSRFRSNKTRILLVTDVASRGLDIPLVDLVINFDFP--- 332 Query: 528 FLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE 573 S + I +GR AR G A+ S I + Sbjct: 333 --YSTKLFIHRVGRTARAGRQGLAVSIVTNKDFSFLLQILYKLNKTL 377 >UniRef50_A8N6Y1 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N6Y1_COPC7 Length = 949 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 61/489 (12%), Positives = 123/489 (25%), Gaps = 70/489 (14%) Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 T +IP P V L R + + L Sbjct: 121 IPTPIQRLSIPALLENPPRDLVGMARTGSGKSLAYMVPLVQRLGGIHQTTFGARALILLP 180 Query: 289 RTQFDLEMMNEL--------------GYCSGIENY--SRFLSGRGPGEPPPTLFDYLPAD 332 + ++++ G G + S GE F+ + + Sbjct: 181 TRELAVQILKVGKELARGWHAKGDHAGDKEGESSKGQSLRWGLVVGGEGLDEQFEMITNN 240 Query: 333 GLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 +++ + + M + E + + + QTI Sbjct: 241 PDVIIATPGRLLHLVVEMNLDLKSIQYVVFDEADRLFEMGFETAMNELLHRLPPSRQTIL 300 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQRAA 444 SAT +E + + D + I A + LL+ +R Sbjct: 301 FSATLPKSLVEFAKAGLQDPKLVRLDSESKISSDLKMAFFSVKQAEKEACLLTLLRDVIK 360 Query: 445 --------------------------------INERVLVTTLTKRMAEDLTEYLEEHGER 472 + L+ TK E LT L G Sbjct: 361 VPLGENKLEDDDGDKDKKKKGGKKAKVAPHALAPHQTLIFAATKHHVEYLTNLLITVGYS 420 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 V +++ +D V R + R G ++LV ++ G+D+P + V D Sbjct: 421 VSHIYGSLDQVARSIQMDKFRKGLTNLLVVTDVAARGIDIPVLQNVVNYDFPH-----GA 475 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE-----KQQKYNEEHGITP 586 R + +GR AR G A + + R + + + Sbjct: 476 RVFVHRVGRTARAGRPGWAWSFITNSELPYLLDLQLFLARPLVNTVPGDEDHFYTENLVL 535 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 ++ +D R + + ++ + + Sbjct: 536 GTFGRETLDEEVEYTRSLDDVNHSLPSLR---QVMIRGHTLYERSKGKASPASYKRAKEM 592 Query: 647 AQNLEFEEA 655 ++ ++ A Sbjct: 593 MKDPKWLLA 601 >UniRef50_C0S632 ATP-dependent RNA helicase dbp2 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S632_PARBP Length = 592 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 88/298 (29%), Gaps = 14/298 (4%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 + F T P + + + + L Sbjct: 123 QSSRDFSRPTAIQSQGWPMALSG-RDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG 181 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + T+ + G + R + G P L + + Sbjct: 182 PIVLVLAPTRELAVQIQTEITKFGKSSRIRN-TCVYGGVPKGPQIRDLTRGVEVCIATPG 240 Query: 342 VTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 I + G R L E L + + K QT SAT Sbjct: 241 RLIDMLEAGRT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPKD 299 Query: 400 ELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLLSEIRQRAAI-NERVL 450 + + + D + G + I+E+ + + + + + N ++L Sbjct: 300 VRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHLERIMDDKNAKIL 359 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + T TKR+A+D+T +L + G +H D ER ++ + + G+ ++V ++ Sbjct: 360 IFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASR 417 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 6/74 (8%) Query: 512 MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 + +++ V D + + IGR R G AI A+ + Sbjct: 487 VRDITHVLNYDYPN-----NSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDLVAILN 541 Query: 571 RREKQQKYNEEHGI 584 ++Q + Sbjct: 542 ESKQQIDPRLAEMV 555 >UniRef50_B8PIE5 Predicted protein n=3 Tax=Agaricomycetes RepID=B8PIE5_POSPM Length = 806 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 62/452 (13%), Positives = 134/452 (29%), Gaps = 38/452 (8%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F I + ++ K R + + + L + L Sbjct: 71 KAFFVDMTDIQAKSLPVSLKGKDVLGAARTGSGKTLAFLVPVLEILYRRKWGPQDGLGAL 130 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 ++ + +++ + L G ++S L G+ + L ++V + Sbjct: 131 IISPTRELAVQIFDVLRSIGGYHSFSAGL--VIGGKNVKDERERLSR-MNILVATPGRLL 187 Query: 345 PQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + D + L E L A QT+ SAT + + Sbjct: 188 QHMDQTIGFECDNLQMLVLDEADRILDMGFQRTLSALLSHLPKARQTLLFSATQTDSVSD 247 Query: 403 KSGGDVVDQVVRPT----------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D V L+ + + ++D L S ++ +VLV Sbjct: 248 LARLSLKDPVYIGVHDSDNASAMPKSLEQHYVLCTLDQKLDLLWSFLKSHLQS--KVLVF 305 Query: 453 TLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + + + E G + +LH + R+ + + VL ++ GL Sbjct: 306 LSSCKQVRFVFETFRRLHPGVPLLHLHGKQKQMTRLATFQRFTGMKHAVLFATDIAARGL 365 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D P V+ V +DA + I +GR AR + GK +L+ Sbjct: 366 DFPAVNWVLQVDAP-----EDAETYIHRVGRTARYESAGKGLLFLMPSEEEGMT--QALA 418 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 ++ +K + Q + ++ ++ I + V Sbjct: 419 KKSITAEKI-KIRASKTQSIENQLQNLAFQDPEIKYLAQRAFVSYLRSVHLQKDKSIFKV 477 Query: 630 KAL----------QQKIHELEGLMMQHAQNLE 651 L + +++ L + A+ + Sbjct: 478 AELPAERFAEALGLPGMPKIKFLTKEMAKKRK 509 >UniRef50_A7AWS5 DEAD/DEAH box helicase and helicase conserved C-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AWS5_BABBO Length = 454 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 56/375 (14%), Positives = 105/375 (28%), Gaps = 28/375 (7%) Query: 225 SLFDPLTGQIVSTIPRFTIY---PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 P G+ + I I + LLE+ + + Sbjct: 45 RRASPWDGRHPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIP---VLHHLLEDVQRI 101 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 L + ++ + S + + + G L ++V Sbjct: 102 YCVVLAPSRELCEQIAEQFRALSS--SIALQVCVIIGGVDMVHQASALAKRPHVIVASPG 159 Query: 342 VTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + +K + E L D K QT SAT Sbjct: 160 RLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKK 219 Query: 400 ELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D + LD + P + L + + A +V Sbjct: 220 LSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATR--TAIVF 277 Query: 453 TLTKRMAEDLTEYLEEHGERV---RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 T A+ YL+ LH + +R ++ + G ++LV + G Sbjct: 278 CKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRG 337 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+P V LV D + I +GR AR G A+ + + + I Sbjct: 338 LDLPMVELVINFDIP-----ECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELA 392 Query: 569 ERRREKQQKYNEEHG 583 ++ ++ +E Sbjct: 393 LNKKLEEFTDLDEDT 407 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 56/427 (13%), Positives = 129/427 (30%), Gaps = 35/427 (8%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D + + P + + ++ A + Sbjct: 554 DQIKALKEIKRDMESKKPMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAY 613 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + E + I + + + + + + ++ +H + + Sbjct: 614 QHWKVFRERLEVFPVNVEILSRLKPK------SEQKRIIERIRKGEIDIIIGTHRILQKD 667 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + +G + + + +Y+SATP L Sbjct: 668 VEFKDLGLIIVDEEHRFGVLQKESF--------KKKYPHVDILYLSATPIPRTLSMVLSG 719 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYL 466 + V T + + V +++ E IR+ +V E + E L Sbjct: 720 IRQFSVLETPPENRLPIQTFVVEYNPEIIQEGIRRELERGGQVYYVCNDIERLEKIKEEL 779 Query: 467 EEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 + Y H +D E E++ + G+ DVL+ ++ G+D+P + + + +A+ Sbjct: 780 TKLVPEATYSIAHGKMDDEELTEVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAE 839 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 G + L Q GR R+ + + + K+ + +E Sbjct: 840 HMGLAQ----LYQLRGRIGRSYKQAYAYFLH-------APLKKLSLDSIKRLEALKEFSS 888 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 GL + D+ G K + ++V + + L++ I+EL+ Sbjct: 889 LGSGLRLALRDLEIRGAGKILGKEQHG-------HINSVGFYLYLQLLEEAINELKNSQG 941 Query: 645 QHAQNLE 651 + +N Sbjct: 942 KSEKNKV 948 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 91/245 (37%), Gaps = 27/245 (11%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + LE+ + ++ L G+ + +RP + + N+ Sbjct: 14 ILLEKVLRSSEFSNLEKEIN-SRSNIKLFGIYKGFFPLLFLYL-KRYKRPILWVTNNEED 71 Query: 70 A---AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 L +++ + +P + + ++ RL A Sbjct: 72 LSIWEDLQEDLE--------------------LSILPPYVHLPYERPLRSPQVQGKRLKA 111 Query: 127 TKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 ++ +VAS+ ++ Y L + K +L + VG I + I + LAE Y R Sbjct: 112 ISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFLAENLYQRTP 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q + G + +RG ++DIFP + +R+E F +E+ + F+ + + T + P Sbjct: 172 QVEKIGEYSIRGGILDIFPPLYE-NPIRIEFFGDEISSIRFFNLEDKRSIKTTKEVILTP 230 Query: 246 KTHYV 250 + + Sbjct: 231 ISELI 235 Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 43/162 (26%), Gaps = 22/162 (13%) Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G ++ I D + G R + + R G + K Sbjct: 387 GFLWENEKVLVITDYEIFGKKRKRKPI--------RYEKG-----LKPKDLYLLKDGDYV 433 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 + + + K+ + I + P+ E + +S Sbjct: 434 VHVNYGIGIFRGLKKLKIDDVEKEFIYIEYANNSFL---------YVPLEEMHLIQRYVS 484 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 +I LE + + E A +I ++L ++ Sbjct: 485 SSPEPPQISRLESHQWEETKRKVKESAKEIAEELLKVYAQRE 526 >UniRef50_Q7RYZ7 ATP-dependent RNA helicase dbp-8 n=2 Tax=Sordariaceae RepID=DBP8_NEUCR Length = 626 Score = 218 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 66/430 (15%), Positives = 113/430 (26%), Gaps = 42/430 (9%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 V+ L+ + I + + N Sbjct: 206 LVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFA---VPILQQWAANPS 262 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + LT + L++M ++ S L G L LV+ Sbjct: 263 AIFGVILTPTRELALQIMEQVIALSQPHVLKAVL--ITGGADMRKQAIDLAKRPHLVIAT 320 Query: 340 SHVTIPQI-----GGMYRGDRARKETLVEYGFRL------PSALDNRPLKFEEFEALAPQ 388 I + R + L E L D Q Sbjct: 321 PGRLADHIRTSGEDTICGLRRVKFIVLDEADRLLANSGHGSMLPDVEECFSVLPPPSERQ 380 Query: 389 TIYVSATPGNYELEKSGGD---VVDQVVRPTGLLDPIIE---------VRPVATQVDDLL 436 T+ +AT S V + PV + L Sbjct: 381 TLLFTATMTPEVKALSERPPIPGRAPVFVCEVDTQRLAIPATLRQMHLQVPVTHREHYLH 440 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +++ V++ A+ L L RV LHS + +R++ + R Sbjct: 441 MFLLTPQNVDKSVIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASA 500 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 +LV ++ GLD+PEV +V D R I +GR AR G A+ + Sbjct: 501 ARILVATDVAARGLDIPEVKIVINYDIP-----RDPDDYIHRVGRTARAGRKGDAVTFVG 555 Query: 556 KITPSMAKAIGETERRREKQQKYNEE--------HGITPQGLNKKVVDILALGQNIAKTK 607 + + AI + R+ + + G K+ + Q K Sbjct: 556 QRDVDLVLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQKEVGGK 615 Query: 608 AKGRGKSRPI 617 K + Sbjct: 616 RKRGKEKLRA 625 >UniRef50_UPI0001926D68 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 n=1 Tax=Hydra magnipapillata RepID=UPI0001926D68 Length = 552 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 65/378 (17%), Positives = 126/378 (33%), Gaps = 26/378 (6%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRL 368 L G + L + +V+ I + + L E L Sbjct: 104 IQLGLATGGLDSRSQEAILRKNPDVVIATPGRLIDHLHNTPSFNLQTIEILVLDEADRML 163 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLD 420 ++ + QT+ SAT + + + V L Sbjct: 164 EEHFHDQMKEIIRLCPRGRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQ 223 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 + +R + + N++ LV TK +A L G + LH ++ Sbjct: 224 EFVRIRSTREADRLAVVVALCCRSFNQQTLVFLQTKVLAHKLRIIFGLFGLKAAELHGNL 283 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++R+E + + E D+LV +L GLD+ V V + + +S I +G Sbjct: 284 TQLQRLEALEKFKNNEVDILVATDLAARGLDIVGVKTVISFNMPT-----TIKSYIHRVG 338 Query: 541 RAARNVN-GKAILYGDKITPSMAKAIGETERR----REKQQKYNEEHGITPQGLNKKVVD 595 R AR G++I + M K + + + R + E++ + K + + Sbjct: 339 RTARAGKAGRSITLVGEKERKMLKEVVKNAKIPVKNRILSTEVVEKYKNKLESFEKDIKE 398 Query: 596 ILALGQNIAKTKA------KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 IL ++ + + K + E + P K +Q + + + +N Sbjct: 399 ILKEEESAKQLRVAEMEMNKAKNLIEHHDEIMSRPAKTFIKTQKQSSAKNKKESQKKVKN 458 Query: 650 LEFEEAAQIRDQLHQLRE 667 L EE R+Q+ R+ Sbjct: 459 LTEEEKKIRREQMFHARQ 476 >UniRef50_A7S2R2 Predicted protein n=3 Tax=Eumetazoa RepID=A7S2R2_NEMVE Length = 643 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 59/456 (12%), Positives = 125/456 (27%), Gaps = 37/456 (8%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR-KVLLEN 277 ++ L +T + + + + + + Sbjct: 60 RTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTS 119 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 L ++ + + L + S L G+ + +VV Sbjct: 120 MDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGL--IIGGKDLKNEQKRI-MKTNIVV 176 Query: 338 DESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + + + L E L E QT+ SAT Sbjct: 177 CTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPSERQTLLYSAT 236 Query: 396 PGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 + + + + L V + +++ L S IR Sbjct: 237 QTRSVKDLARLSLQEPTYISAHEKSDTSTPNRLTQSYVVCELPDKLNFLFSFIRNHLKS- 295 Query: 447 ERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++LV + + + + E G + L+ ++R+ I + VL + Sbjct: 296 -KILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQKQLKRVAIYDEFCKKTQCVLFATD 354 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK 563 + GLD P V+ V LD + I GR AR G+++L + Sbjct: 355 IAARGLDFPAVNWVIQLDCP-----EDANTYIHRAGRTARYQKDGQSLLVLLPSEE---Q 406 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + + ++ + + + K+ LA Q + K V + Sbjct: 407 EMIKALKDKKVPINEIKVNPKKMSSIQSKLESFLAQDQELKHWAQKSIISYVRSVFLQSN 466 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 L + + + +L A +IR Sbjct: 467 KKIFDTTKL---------PIKEFSVSLGLSNAPRIR 493 >UniRef50_Q1Q4V2 Similar to ATP-independent RNA helicase DbpA n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4V2_9BACT Length = 407 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 52/392 (13%), Positives = 110/392 (28%), Gaps = 21/392 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +EL + ++ L + I+ E L + Sbjct: 6 LELSADILKALDKMGYNEMTPIQEATYPIIFAGHDLCALAETGSGKTAACAIPLIQKVDP 65 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 L+ + + + ++ + E+ + + G + Sbjct: 66 SLDAIQG---LVIVPTRELCMQYVEEIRKIAAKTDVIP--YAVYGGFDRAAQIARVKQTV 120 Query: 334 LLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++V I + G+ R + L E L QT+ Sbjct: 121 HILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLF 180 Query: 393 SATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 SAT + + + + + ++ + ++L+ ++ Sbjct: 181 SATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFSYVNPKQKHEELVKYLKGEEVN 240 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + L+ + M + L L + + Y+H+ + +R IIR R + L+ ++ Sbjct: 241 --QALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLIASDV 298 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 GLD VS V D ++G GRA R G A K S+ Sbjct: 299 AGRGLDFSHVSHVINWDMPRDG-----EQYTHRTGRAGRMGRKGIAFTLVAKKDLSLLSK 353 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 + + + N + I Sbjct: 354 VISSRKISPCWIGKNPFNEEARSRQRIPRKKI 385 >UniRef50_A3PFY9 DEAD/DEAH box helicase domain protein n=28 Tax=cellular organisms RepID=A3PFY9_RHOS1 Length = 793 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 55/389 (14%), Positives = 101/389 (25%), Gaps = 40/389 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ E E F I + +R++ A LA Sbjct: 39 TPVQ-EAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADT--PIALAI 95 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMN--ELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E L + G E + P L D Sbjct: 96 APTRELALQVARELGWL---YGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 152 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ L + V + + M Sbjct: 153 HIERGSLDLSGLRAVVLDEADEMLDL-----------------GFREDLEFILGSAPEER 195 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPT-GLLDPIIEV------RPVATQVDDLLSEIR 440 +T+ SAT + D V T G ++ + + + +R Sbjct: 196 RTLMFSATVPKEIEALAKEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLR 255 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 A +V T+ L + G +V L ++ ER ++ LR G V Sbjct: 256 FYEAP--SAIVFCKTRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVC 313 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITP 559 + ++ G+D+P + LV D + +L+ GR R G ++L Sbjct: 314 IATDVAARGIDLPGLELVIHADLPT-----NSETLLHRSGRTGRAGSKGVSVLIAAPSEV 368 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQG 588 A+ + + K + + Sbjct: 369 RKAQRLLTGAKLVADWGKPPSADEVQERD 397 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 96/659 (14%), Positives = 199/659 (30%), Gaps = 93/659 (14%) Query: 22 RRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F Sbjct: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 Q + +T S ++ I RLS + + V++ Sbjct: 63 T--------------DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIV 108 Query: 141 SVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+ + P +L L + G + + A+ +L Y DQ + G + RG + Sbjct: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D+FP S+ + R++ FD+E++ L +FD + + + + + P + T + I Sbjct: 169 LDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELF 227 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + ++ +R + + +++ +GIE + Sbjct: 228 RSQWRDTFEVKRDP-----------------EHIYQQVSKGTLPAGIEYWQPLFFSE--- 267 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG---DRARKETLVEYGFRLPSALDNRP 376 P P LF Y PA+ LLV + + P +L R Sbjct: 268 -PLPPLFSYFPANTLLVN--TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRV 324 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + P+ + + + ++ A Q L Sbjct: 325 DELFSELKNWPRVQLKTEHLPTKAAN-ANLGF-----------QKLPDLAVQAQQKAPL- 371 Query: 437 SEIRQRAAINERVLVT-TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +R+ + +V ++ E L E L +R+ + + Sbjct: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKI----------APQRIMRLDEASDR 421 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY-- 553 +++ G +L I ++D G R AR Sbjct: 422 GRYLMI--GAAEHGFVDTVRNLALICESDLLGE------------RVARRRQDSRRTINP 467 Query: 554 -GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + +Y + G+ + + + Sbjct: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL-------- 519 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 P+ + +H+L G A+ E+ + +L + A Sbjct: 520 -YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 57/441 (12%), Positives = 120/441 (27%), Gaps = 35/441 (7%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + +LF + + D V + ++ A Sbjct: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q + + IE SRF S + + + Sbjct: 649 HKQVAVLVPTTLLAQQHYDNFRDRFAN--WPVRIEMISRFRSA----KEQTQILAEVAEG 702 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + ++ +H + + R + + + + Sbjct: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEE--------HRFGVRHKERIKAMRANVDILTL 754 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLV 451 +ATP L + + D + T + V ++ I + +V Sbjct: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 + E L E R H + E ++ D F+VLV ++ G Sbjct: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+P + + I AD G + L Q GR R+ + KA+ Sbjct: 875 IDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQAYAWLLTPHP----KAMTTDA 926 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 ++R + E+ G G D+ G + + + + + Sbjct: 927 QKRLEAIASLEDLG---AGFALATHDLEIRGAGELLGEEQSG-------SMETIGFSLYM 976 Query: 630 KALQQKIHELEGLMMQHAQNL 650 + L+ + L+ ++L Sbjct: 977 ELLENAVDALKAGREPSLEDL 997 >UniRef50_UPI000180CC42 PREDICTED: similar to ATP-dependent RNA helicase n=1 Tax=Ciona intestinalis RepID=UPI000180CC42 Length = 816 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 54/422 (12%), Positives = 114/422 (27%), Gaps = 20/422 (4%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + I V + + + L+ + Sbjct: 91 PTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEKLQGAQSGAGAR-ALLLSPTRE 149 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 L+ + + S + G+ F + + + + + + M Sbjct: 150 LALQTLKFVKELGRFT--SLRTACILGGDSMDEQFSAMHENPDVTIATPGRLMHVLIEME 207 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 R E + + QT+ SAT +E + + D Sbjct: 208 LRLSNIHYVVFDEADRLFELGFQEQLHEVLHRLPDDRQTLLFSATLPKQLVEFAKAGLND 267 Query: 411 QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + L L ++ L+ +R E+ +V TK E + Sbjct: 268 PTLVRLDLDSKLSDQLKLAFLHLREDDKLPALIHLLRNVFKETEQTVVFVSTKHHVEFVK 327 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 + L+ Y++S +D R I R + VL+ ++ GLD+P + V Sbjct: 328 DVLKLFSINCSYVYSSLDHTARKINIAKFRNKKTMVLIVTDVAARGLDIPMLDNVIN--- 384 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE---KQQKYN 579 F + + +GR AR G A + + R K + Sbjct: 385 --FSFPAKSKLFVHRVGRVARAGRTGTAYSLVCPEELAYVIDLHLFLGRPLNFAKTGQTY 442 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + ++++++D K + + + + P A + I Sbjct: 443 QAWDNVYGRVSQRIIDEEQAALQNIKNNSDLQALLKVAQNAYKQYLKSRPAASSESIKRS 502 Query: 640 EG 641 Sbjct: 503 RE 504 >UniRef50_B1YL87 DEAD/DEAH box helicase domain protein n=2 Tax=Exiguobacterium RepID=B1YL87_EXIS2 Length = 450 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 52/452 (11%), Positives = 108/452 (23%), Gaps = 16/452 (3%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 +L VE L + + + + + Sbjct: 8 DLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIVQNVNPE 67 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 L+ + + + ++ EL + S G + Sbjct: 68 LQEMQ---AIIVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRERQIGRVKVSPQ 124 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +V+ + + + + E L + + Q + S Sbjct: 125 IVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQMMVFS 184 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--INER 448 AT + + I V + D + A Sbjct: 185 ATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPVKHRDRSDLTLKLAKALNPYI 244 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 LV T TK A +L E G V LH D+ R + I+++ ++ ++ +L Sbjct: 245 CLVFTNTKTEAIELEALFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQYVIVTDLAAR 304 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGE 567 G+D+ VS V G + + +GR R G A + + + Sbjct: 305 GIDISGVSHVIN-----HGIPKDLDFYVHRVGRTGRVDQDGLAYTLFEDHENGSINRLED 359 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDM 627 + + + A ++ G Sbjct: 360 R-GIEFINVDVKSGQVSEVKERRRAKPHMKTAVSKTAHSRLSGEAAKAKKRVKPGYKKKH 418 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 K + E + A++ + Sbjct: 419 QYKLKETAKRERIKEQRGIGRAERKANASKNK 450 >UniRef50_A9UXI8 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UXI8_MONBE Length = 552 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 61/431 (14%), Positives = 119/431 (27%), Gaps = 38/431 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLL-ENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + + + ++ + L+ L Sbjct: 72 LKGQDVLAAAKTGSGKTLAFLIPVLEGLFRQRWSKPDGVGGLIISPTRELALQTYEVLTK 131 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY--RGDRARKET 360 + S L G + ++ +++ + + + D + Sbjct: 132 IGCFHDMSAGL--VVGGTTLER-EKAVISNTNIIICTPGRLLQHMDETFGFSCDNLQMLV 188 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L E L E QT+ SAT + + + D Sbjct: 189 LDEADRILDMGFAKTLNAILENLPKQRQTMLFSATQTKSVKDLARLSLKMPEFISVHEQD 248 Query: 421 ---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-- 469 P+ ++D L S IR + ++LV + + + E L Sbjct: 249 KTATPHKLVQAYMTVPLNQKLDVLFSFIRSHVNV--KMLVFVSSCKQVRFIYETLRRMRP 306 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G + L+ +R+ I D VL+ ++ GLD P V V LD Sbjct: 307 GVPLLALYGKQKQAKRVAIYNDFSKKTHAVLLATDIAARGLDFPSVDWVFQLDCP----- 361 Query: 530 RSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + I +GR AR GKA+L +M + + R+ + E + + Sbjct: 362 EDVATYIHRVGRTARYGKEGKALLTLLPSESAMVQQLA----ERKVEVVSTEANASKIKS 417 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + ++ A + K V L + + A Sbjct: 418 ITPRLKAFCAESPELKYLAQKCFISYTRSVFLQPNKEVFRIDEL---------PLEEFAL 468 Query: 649 NLEFEEAAQIR 659 +L A +I+ Sbjct: 469 SLGLPAAPRIK 479 >UniRef50_A2E9Y0 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2E9Y0_TRIVA Length = 536 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 56/372 (15%), Positives = 110/372 (29%), Gaps = 30/372 (8%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + + ++ ++ L+ + I +Y+ ++ Sbjct: 160 FAKPLVIQAASIPLSIDS-YDIIGLSQPGTGKTLAYVIPLL-YYILEYKKNHPETNNFSI 217 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-DLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L+ E ++E + + P Sbjct: 218 PLSVVLVPTHELAVQVQEVIDKLGINLGIKSRTLTGSFRLNDQALELSHENHVIVATPGR 277 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + A + V + + + M L + Sbjct: 278 LKDAIEAHLVSVKKVFFIVMDEADKMVDKS-----------------LGPQISFILNECP 320 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSEIR 440 + SAT + L V G + + I +V Q D L ++ Sbjct: 321 KEKHLMMFSATMPHEVLSIVEEFFTKVVTVSVGEIGGASENIKQVVHYCRQADRLGLLLK 380 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + ++V T T+ E ++ +G R ++H ER I+ ++ FDVL Sbjct: 381 SLRGMKAPIIVFTNTRDSCEKSAMEIQNNGFRSAFIHGGKSQKERDSIVEGIQNNLFDVL 440 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 V +++ G+D+P V V L+ R+ + + IGR RN G A + K Sbjct: 441 VATDVISRGIDIPNVENVVNLELP-----RNIHTYVHRIGRTGRNGKEGIATSFVTKDDK 495 Query: 560 SMAKAIGETERR 571 + + RR Sbjct: 496 EIMYDLAAMLRR 507 >UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DSB9_ZYGRO Length = 491 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 69/406 (16%), Positives = 135/406 (33%), Gaps = 24/406 (5%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY--PKTHYVTPRERIVQAME 261 P S + L E ++ L + + P + + + Sbjct: 95 PLYSVKSFEELGLSPELLKGLYAMKFQKPSKIQEHALPLLLHNPPRNMIAQSQSGTGKTA 154 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + R L + + L + + + + S L Sbjct: 155 AFSLAMLTRVNPEL--GEATQAICLAPSRELARQTLEVIQEMGKFAKISTQLIV------ 206 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLP-SALDNRPLKF 379 P +VV + I + + L E L L ++ ++ Sbjct: 207 PEAFEKGQQIKAQVVVGTPGTVLDLIRRKLINLSQVKIFVLDEADNMLDKQGLGDQCIRV 266 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQV 432 ++F + Q + SAT + E + V D + + + Sbjct: 267 KKFLPKSTQLVLFSATFPDQVKEYAKRVVPDANSLELQRNEVNVSAIKQLYMDCNDESHK 326 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 ++L+E+ I ++ TK+ A L L++ G +V LH D+ + ER +I D Sbjct: 327 YEVLTELYGLLTIGSS-IIFVSTKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDF 385 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKA 550 R G VL+ N+L G+D+P VS+V D + + + +GR R G A Sbjct: 386 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTTQTGQPDPSTYVHRVGRTGRFGRKGVA 445 Query: 551 ILYG-DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 I + DK + + +I + + + + + + + KKV+ Sbjct: 446 ISFVHDKKSYQILSSIQKYF-QDVEMTRVPTDDWDKVEKIVKKVLK 490 >UniRef50_A8NVZ5 RNA-dependent helicase, putative n=1 Tax=Brugia malayi RepID=A8NVZ5_BRUMA Length = 604 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 46/337 (13%), Positives = 95/337 (28%), Gaps = 30/337 (8%) Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R +Q F + D+ A + + + F Sbjct: 102 RREQVEIDRWFTDNQVLTDMLFANFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFI 161 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + H + R Q L L + + T + + G Sbjct: 162 LPAIVHTINQPPRGHQKS---PSVLVLLPTRELAQQVEEVAKDYCRATDLSITCL-FGGA 217 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + P L D+L + +++ + + Sbjct: 218 PKATQARDLERGVDIIIATPGRLMDFLEIGKTDLRRCTYLVLDEAD-------------- 263 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----- 417 L + + K QT+ SAT + + + D G Sbjct: 264 ---RMLDMGFEPQIRKVVSQIRPDRQTLMFSATWPKDVRKLAMDFLTDAAHLNVGSLELS 320 Query: 418 ---LLDPIIEVRPVATQVDDLLSEIRQRAA-INERVLVTTLTKRMAEDLTEYLEEHGERV 473 + I+E+ + + L++ + + + ++ TKR A+DLT ++ G Sbjct: 321 ANHNITQIVEIIDESNKQQRLMAILSDIMNKEDCKTIIFVETKRKADDLTRWMRRDGWPA 380 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 +H D ER + + R G+ +L+ ++ GL Sbjct: 381 LCIHGDKGQSERDWALSEFRSGKTPILLATDVAARGL 417 Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 7/81 (8%) Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ ++ V D + + + IGR R G A + AK + + Sbjct: 491 DVDDIKYVINFD-----YSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAPKAKDLIKVL 545 Query: 570 RRREKQQKYNEEHGITPQGLN 590 + E H + N Sbjct: 546 EEANQSIP-PELHQMAKDNFN 565 >UniRef50_C5KHX3 ATP-dependent RNA helicase DRS1, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHX3_9ALVE Length = 720 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 58/511 (11%), Positives = 133/511 (26%), Gaps = 73/511 (14%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM----- 260 ++ ++ ++ + + + F + + Sbjct: 153 FAEPTPVQRDVIPVALRSQDIL-AMAETGSGKTGGFLLPIVERLCQASHVRSRRKDPHTG 211 Query: 261 -----EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + L L + R + + G+ + + Sbjct: 212 RITGGRAATKALVLLPTRELAVQ-CYKMLRDFTKFAPLTSCLVVGGFDAQKQASEMRAQP 270 Query: 316 RGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P + D L + + V + + + + Sbjct: 271 DVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDEC--------------- 315 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP--------IIEVR 426 ++ + QT+ SAT L+ + + V T + I V Sbjct: 316 -LTIIQKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVT 374 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG-ERVRYLHSDIDTVER 485 + LL+ +R L+ K+ A + L G + LH ++ +R Sbjct: 375 SEQQREATLLAA--CTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQR 432 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ + D G+ L+ +L GLD+P V V + + +GR AR Sbjct: 433 VKALADFESGKATHLICTDLAARGLDLPHVETVINFELP-----PDVTKYVHRVGRTARA 487 Query: 546 V-NGKAILYGDKITPSMAKAIGET----ERRREK---------------------QQKYN 579 +G ++ K I + +R++ K Sbjct: 488 GASGTSVTMYTPGEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKIT 547 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 E Q + ++ V+ ++ K R ++ + A + I Sbjct: 548 ESEDKVKQIMQEESVERELRLADVMAKKVDNMKTHRKEIDRRPRQQWIRKGAGAEAIDSA 607 Query: 640 EGLMMQHAQNLE--FEEAAQIRDQLHQLREL 668 + ++ E Q + + Sbjct: 608 SKVPKTRSEKRAARKLEVQQAKKDQERAERR 638 >UniRef50_UPI0001976677 Superfamily II DNA and RNA helicase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI0001976677 Length = 681 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 63/478 (13%), Positives = 123/478 (25%), Gaps = 30/478 (6%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME--EIKEE 266 ++ + + + + L F I V E +I++ Sbjct: 70 AFPIQADTLADSLNGVDLLG-RGQTGSGKTLAFAIPLVARLSEHSVTEVAMKEFEQIRKA 128 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + + + T+ + ++E+ E Y G Sbjct: 129 SDEKAAREQASLPRPRG-LVLAPTRELVNQIDEVIQPL-AEAYGMSTVTVYGGVSYARQV 186 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 L A +VV + D L E + E Sbjct: 187 AGLRAGADIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMADMGFLPPVTRLLEQTDS 246 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQR 442 Q + SAT + + D V + + + IR Sbjct: 247 RGQRMLFSATLDHGVDALVKRFLPDAKVHAVSSVVSQVDTMTHHVFEVSQGNKHEVIRLL 306 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A+ + ++ T TK A+ + + L + G L ++ +R + G VLV Sbjct: 307 ASGTGKRILFTRTKFQAKKMAKKLIDEGIPAVDLQGNLSQKQRDRNLLAFEKGLVRVLVA 366 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSM 561 ++ G+D+ +V+LV D +S + GR AR G + Sbjct: 367 TDVAARGIDVHDVTLVVQTDPP-----ADPKSFLHRSGRTARAGEQGDVVTLVLPNQARS 421 Query: 562 AKAIGETERRREKQQKY---------------NEEHGITPQGLNKKVVDILALGQNIAKT 606 + + + R K G + + + G++ K Sbjct: 422 TRQMMKRAGIRVKSVAITPASEDLTELVGEHAPVVEGWSLDKALEALRRSERAGRSDRKG 481 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 G + + +G A+ E A D + Sbjct: 482 GRGGEARGGRGRSGRKSRARGGEHDFSRPSARRDGHRHDGAEMEGRESAQYRFDHRDE 539 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 68/460 (14%), Positives = 128/460 (27%), Gaps = 40/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD D LT P + + ++ A Sbjct: 545 FDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQV 604 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + +E M E + + + + + Sbjct: 605 AVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQEE------REALKGIKSGKVDI 658 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H Q + + + + + +SATP Sbjct: 659 VVGTHRLASQDVDFHNLGLVIIDEE--------QRFGVDVKERLKALKATVDVLTLSATP 710 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L S V D + D + V +DL+ + + ++ Sbjct: 711 IPRTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNR 770 Query: 456 KRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E + L + H ++ E +++ D G+FD+L+ ++ GLD+P Sbjct: 771 VNDIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIP 830 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRR 572 + + I +A++ G L Q GR R L D K+I RR Sbjct: 831 NANTIFINEAERYGLA----DLHQLRGRVGRYKNRAHCYLLIDSN-----KSITPNAARR 881 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + + E G G + D+ G + V ++ + L Sbjct: 882 LRAIEEFSEMG---AGFQISMRDLEIRGAGNLLGTQQSG-------HIAAVGYELYCQLL 931 Query: 633 QQKIHELEGL--MMQHAQNLEFE-EAAQIRDQLHQLRELF 669 + + L+ Q A +L EA D + +R Sbjct: 932 ENAVRSLQRQPPKQQLAVDLNLPGEAFLPSDYVDDMRLKI 971 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 82/246 (33%), Gaps = 27/246 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 Q + + T+ GV GS A + + P + + P + A Sbjct: 18 LPGRIAQLAGFAEVVAAMSR-HEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREA 76 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L ++ F Q +PS ++ I + + RL K + Sbjct: 77 DDLAIDIALF--------------RSQGILPLPSFESAIVAELGRD-DAFGPRLRTLKEL 121 Query: 131 LERR---------DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 L R +VV S+ ++ ++ + ++ LR L E Sbjct: 122 LVARENPRAAATLQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHG 181 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y G F RG +ID+F A R+ELFD+EVE + FD T + + + Sbjct: 182 YEATTSVQLPGEFCHRGGIIDLF-AHDWQRPARIELFDDEVESIRQFDVATQRSLGALDW 240 Query: 241 FTIYPK 246 I Sbjct: 241 VEITAI 246 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 65/245 (26%), Gaps = 47/245 (19%) Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + + + ++ A +E V++ T T+ + L E Sbjct: 331 FSGDLTKVRDQLGDLAGDHE-VMIITPTEAEVQRLREIFATTSLAAT------------- 376 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G ++G LREG +P+ L+ I + R Sbjct: 377 -------GRLSYVIGT--LREGFRVPDEKLIIITGGELFHRGELRRLPR--------RRL 419 Query: 548 GKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 GKAI + D + + R + + Sbjct: 420 GKAIDSFLDLREGDLVVHLAHGIGRFAGI--------KLLERGETSEEHLEIEFDG---- 467 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 G P V D V + + + ++ G + A + ++ +L+ Sbjct: 468 ---GTRIYVPAVRIDLVQKYVGGTKTRPSLAKIGGKTWLKQKKAAESAVADLAVEMLELQ 524 Query: 667 ELFIA 671 + A Sbjct: 525 AMRSA 529 >UniRef50_UPI0001791615 PREDICTED: similar to LOC495097 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791615 Length = 748 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 43/366 (11%), Positives = 96/366 (26%), Gaps = 15/366 (4%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V + + N + T+ Sbjct: 51 PTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEKLTQHTVNGHRGIRALILSPTR 110 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM- 350 + G + + G+P F + + +VV + M Sbjct: 111 ELAVQTLKFLKEIGKFTNLKS-AVILGGDPMEAQFSTMHSAPDIVVATPGRFLHLCVEMS 169 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + E + + QT+ SAT ++ + + D Sbjct: 170 LKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTLLFSATLPKVLVQFARAGLSD 229 Query: 411 QVVRPTGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V+ + I + + LL ++ + ++ TK + + Sbjct: 230 PVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVVKPDSMTIIFAPTKHHVDFIH 289 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+ +++SD+D R + G L+ ++ G+D+P++ V Sbjct: 290 LLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLITTDIAARGIDIPQLDTVINY-- 347 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 F + + +GR AR G+A + + R + Sbjct: 348 ---TFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYLLDLHLFLGRPFSPVLETPKS 404 Query: 583 GITPQG 588 G Sbjct: 405 DDDTDG 410 >UniRef50_A8BQS0 ATP-dependent RNA helicase n=2 Tax=Giardia intestinalis RepID=A8BQS0_GIALA Length = 900 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 49/378 (12%), Positives = 113/378 (29%), Gaps = 24/378 (6%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 ++ ++ ++ ++I R L Sbjct: 60 IQKAAIPVIIDGGDAC-VVSKTGSGKTAAYSIPLVNLLGCHRATTG------IRGLVIAP 112 Query: 272 KVLLENNKLLEEQRLTQRT-QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF---D 327 L ++L++ T + G + + + P + D Sbjct: 113 TRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALTANPDIIVCTPGRILHIHD 172 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + +V + M+ + ++ + + + L Sbjct: 173 QVSTFKSQLKSIEYVCFDESDRMFEMNFQQQVNEILDLLPAERTGGHITETRSARDFLGY 232 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIR 440 Q I VSAT N S + + + L P+ + LL R Sbjct: 233 QIIMVSATMPNNLAVFSKARLQNPTIIAAENDMVLPNELTNQFIYCPINYREAALLYICR 292 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + R+LV TK E LT L+ + R ++ +D +R + + G + +L Sbjct: 293 ELVPKTWRLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQKQRTLALSEFDKGRYSIL 352 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + ++ G+D+P ++ V + G ++ + +GR+AR + G + + Sbjct: 353 ISTDVAARGIDIPNLNCVINYNFPSSG-----KNYVHRVGRSARAGSYGLCVSIIEGDEL 407 Query: 560 SMAKAIGETERRREKQQK 577 + + + Sbjct: 408 PYCLDVMLHIGIKFHSMR 425 >UniRef50_C1E981 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1E981_9CHLO Length = 489 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 65/392 (16%), Positives = 107/392 (27%), Gaps = 39/392 (9%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA--RRKVLLE 276 E ++ L + + + + V + + L Sbjct: 64 ETLKILKRMGYASPTPIQSQAIPALLQGRDVVGIAKTGSGKTAAFLLPALVHAMDQPELS 123 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 L + +++ E + R + G G + L A +V Sbjct: 124 KGDGPIVLVLAPTRELGSQILAECKKLARAHEGLRCVGVLGGGSKTENFRE-LRAGAEVV 182 Query: 337 VDESHVTIPQI----GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 V + R L E L + + + QT Sbjct: 183 VGTPGRVVDVCGGGNKAATNLARVTYLALDEADRMLDMGFEAQVRSLCDGVRPDRQTALF 242 Query: 393 SATPGNYELEKSGGDV-------VD----QVVRPTGLLD-------PIIEVRPVATQVDD 434 SAT + D + G EV + Sbjct: 243 SATMPARVRALCDDVLGLIDSRANDGAVGPLTITVGRPGGANSDVAQFAEVLADGSDDAR 302 Query: 435 L---LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIR 490 L ++ IR+ E VLV K + L + G RV +H D+ +R +R Sbjct: 303 LTWLVARIREFVDEGE-VLVFCARKTQVDACVAALRDTAGARVGGMHGDMHQSDRAAALR 361 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN--G 548 R GE VLV ++ GLD+P V V L R S + IGR R N G Sbjct: 362 AFRKGETHVLVATDVAARGLDVPSVRTVVSLHPP-----RDIESHVHRIGRTGRAGNKDG 416 Query: 549 KAILYGDKITP--SMAKAIGETERRREKQQKY 578 +A + + +R ++ Sbjct: 417 RAFTLVARTDGNARFLSDLVLNMQRAGQRVPP 448 >UniRef50_Q4Q1N9 DEAD box RNA helicase, putative n=6 Tax=Trypanosomatidae RepID=Q4Q1N9_LEIMA Length = 527 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 53/437 (12%), Positives = 116/437 (26%), Gaps = 31/437 (7%) Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLE--EQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + Q A L + + T+ + + G Sbjct: 95 GVAQTGSGKTGAYALPLVNWLLAQRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSV-GLR 153 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPS 370 ++ G L +VV + ++ + L E L Sbjct: 154 VATLVGGADMVEQACELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDM 213 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPII 423 + E +T+ SAT + D V+ L Sbjct: 214 NYEKEIDAILEQLPQNRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYY 273 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 P A + L + + +L+ + + +T L G R L +D Sbjct: 274 IFAPFAQMLSYLHLFLTKE--TGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQS 331 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R + + G+ +L+ ++ + GLD+P +V I +GR A Sbjct: 332 NRNIALTKFKEGKVRMLICTDVAQRGLDIPHTDVVVN-----FSLPDHVEDYIHRVGRTA 386 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETERRR------EKQQKYNEEHGITPQGLNKKVVDI 596 R GKA+ + + + I + + + + + + +I Sbjct: 387 RAGAEGKAVNLISQYDIVLLQKIEQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREI 446 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ-----KIHELEGLMMQHAQNLE 651 + + K + + + D DM + + + + Sbjct: 447 REDAEERSLEKESRQLTTARKGKRDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTK 506 Query: 652 FEEAAQIRDQLHQLREL 668 E+ + + + + Sbjct: 507 KEQHKSLWAKRREAKRQ 523 >UniRef50_P39517 ATP-dependent RNA helicase DHH1 n=162 Tax=Eukaryota RepID=DHH1_YEAST Length = 506 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 47/388 (12%), Positives = 98/388 (25%), Gaps = 41/388 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ E + F I + + L Sbjct: 68 KPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKV--------KPKLNKIQAL 118 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + L + M+ G + + P + D Sbjct: 119 IMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD 177 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + D S + + M D + F Sbjct: 178 LASRKVADLSDCSLFIMDEADKMLSRD-----------------FKTIIEQILSFLPPTH 220 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR------PTGLLDPIIEVRPVATQVDDLLSEIRQ 441 Q++ SAT E + + ++ L + + Sbjct: 221 QSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK 280 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + ++ + E L + + + G Y H+ + ER ++ + R G+ LV Sbjct: 281 L--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 +LL G+D+ V++V D ++ + + IGR+ R + G AI + Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFP-----KTAETYLHRIGRSGRFGHLGLAINLINWNDRF 393 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQG 588 I + + + Sbjct: 394 NLYKIEQELGTEIAAIPATIDKSLYVAE 421 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 84/527 (15%), Positives = 195/527 (37%), Gaps = 49/527 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + IR + L++ Q + G+TGS + + V +RP + + N Sbjct: 2 KGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + + P+ + + + + + R+ A Sbjct: 62 HAQKLYDDLLSLMDVDRLFL-------------YPADELISSELSISSPELRGQRVEALD 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L + +V+ V+ + + P L+ + + G ID + ++L + Y + Sbjct: 109 FLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG +IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T Sbjct: 169 NTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + ++ +++++ L+ + + + + DLEM+ Sbjct: 228 EIILDQSYYPDIVKRLEKKMMLTLN-ELKEQEDKQALI--ENLEEDLEMLRSGVKPDMFF 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y P +LFDYLP + +++DE + + R + + + Sbjct: 285 KYIGLAYPD-----PASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMET 339 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--EV 425 + + K +P+ + + I+ ++ Sbjct: 340 VRDVQVSHSFKKLLEGNHSPKIYLSLFQ-----KQMASM--------RVSKTTNIVYKQM 386 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + Q++ L +E+ N V++ AE + + L ++ D+++ Sbjct: 387 QQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDY---------DMESTIL 437 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + + G ++G + G ++P + I + + + Sbjct: 438 KKESDVPKYGMVQFVIGT--FQNGFELPLAKVAIISETELFNKKNQK 482 >UniRef50_D2VE83 Dead box ATP-dependent RNA helicase n=1 Tax=Naegleria gruberi RepID=D2VE83_NAEGR Length = 618 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 55/450 (12%), Positives = 114/450 (25%), Gaps = 68/450 (15%) Query: 149 GDPDL--YLKMMLHLTVGMIIDQRAILRRLA----ELQYARNDQAFQRGTFRVRGEVIDI 202 P + LT G ++ + R L E + R Sbjct: 226 LPPRDDRMQTEDVTLTKGSDFEEFGLKRELLMGIFEKGFERPS----------------- 268 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 P + + + LF ++ F I T + +I Sbjct: 269 -PIQEQTVP--LALFGRDILAR------AKNGTGKTAAFIIPCLERVDTSKNQIQ----- 314 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L L + + + M+ G + + P Sbjct: 315 ---ILILVPTRELALQTSHVCKEIGK-YLNVEVMVTTGGTSLKDDIVRLYKPVHILVGTP 370 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 + D + + S + + + + K F Sbjct: 371 GRIIDLASKGVANLNNVSMLVMDEADKLL-----------------SPEFVPLIEKLISF 413 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI--IEVRPVATQVDDLLSEIR 440 + Q + SAT + + + + + + + Sbjct: 414 VPPSRQILLFSATFPITVKDFRDKWLTKPYEINLMDELTLKGVTQYYAFVEERQKVHCLN 473 Query: 441 QR--AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + ++ + E L + + E G Y+H+ + R + D R G Sbjct: 474 TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACR 533 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI 557 LV +L G+D+ V++V D ++ + + IGR+ R + G AI + Sbjct: 534 NLVSSDLFTRGIDIQAVNVVINFDFP-----KNSETYLHRIGRSGRYGHLGLAINFVTYE 588 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQ 587 I + K + + Sbjct: 589 DRFNLYKIEQELGTEIKPIPPTIDKNLYVA 618 >UniRef50_A8FF99 ATP-dependent RNA helicase n=71 Tax=Bacilli RepID=A8FF99_BACP2 Length = 439 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 58/444 (13%), Positives = 124/444 (27%), Gaps = 26/444 (5%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 EL ++ + + + + + L Sbjct: 10 ELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHSIDPS 69 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSG--IENYSRFLSGRGPGEPPPTLFDYLPAD 332 E+ ++ + ++ E G L Sbjct: 70 KEHVQV---VITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSIQKLKNQ 126 Query: 333 GLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 LVV I +A + E L + Q + Sbjct: 127 PHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQMLV 186 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQRAA--IN 446 SAT + + I+ V ++ D L + + Sbjct: 187 FSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQRDKLKLLHEMVTNVQP 246 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TK +++ +L+E G +V LH + ER ++++ + EF +V +L Sbjct: 247 YLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIVASDLA 306 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+ VS V + + +GR AR +G A+ + I Sbjct: 307 ARGIDIKGVSHVINYELP-----SDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQI 361 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + E + + E L ++ N + KAK + V+P Sbjct: 362 EKMGVVFENKTIVHGEWRDADDRLKRQRRK---KAPNEIEEKAKRLVRKPKAVKPG---- 414 Query: 626 DMSPKALQQKIHELEGLMMQHAQN 649 K + +++ +++ + ++ Sbjct: 415 --YKKKMTREMDKIKRQERRKSKR 436 >UniRef50_A2DFG9 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DFG9_TRIVA Length = 441 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 123/404 (30%), Gaps = 44/404 (10%) Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I Q A L + + T+ + + + G + + Sbjct: 46 ISQTGTGKTAAFALPIISTLSKDPYGIYALVISPTRELAQQICQQFKIFGRGM-NADICP 104 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG------GMYRGDRARKETLVEYGFRLP 369 G L + +VV + + + D + L E Sbjct: 105 IIGGLAITDQASALEKNPHIVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFK 164 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ------------------ 411 + L+ ++ QT+ SAT + + + Sbjct: 165 DGYWDDVLEIIKYLPEKRQTLCFSATKSDQVDLLT--IMTKPPSTSSCPLPSVGKSWFSD 222 Query: 412 -----VVRPTGLLDPIIEVRPV----ATQVDDLLSEIRQRAAIN--ERVLVTTLTKRMAE 460 PT L P IE V + L+ I++ + ++V+V TK A+ Sbjct: 223 DKLTFYWEPTDDLKPKIEHVKVLVQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQ 282 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +T L + +HSD+ ER++ + + R G +LV ++ GLD+P V V Sbjct: 283 TITLILRNFSYKTAVMHSDMQESERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIH 342 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYN 579 + ++ + + GR R G++IL+ + + I + ++ + K Sbjct: 343 FNPP-----QNAATYVHRAGRTGRAGREGRSILFVSGREKKIEQEIEKEIGQQFTELKVE 397 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + D K K ++ V Sbjct: 398 KSEMKEKMNVFWAKKDAKIAMSQSDFGKRDEMLKQLDKIQAGEV 441 >UniRef50_A1A121 Possible ATP-dependent RNA helicase n=16 Tax=Bifidobacterium RepID=A1A121_BIFAA Length = 728 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 61/507 (12%), Positives = 143/507 (28%), Gaps = 26/507 (5%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI--ALRVELFDEEVERLS 225 ++ A+ E ++ V G ++ + A+ ++ + + + Sbjct: 9 NEDALAADFDEAG-EEEERPQTFAELGVPGPLVRVLAADGKKTAFPIQADTLPDSL-AGR 66 Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ- 284 F+I + M + + E+ RK E + + Sbjct: 67 DILGRGRTGSGKTLAFSIPLVARLGEVDADEYENMSQFRHEVEQVRKGHAEERRADDFLP 126 Query: 285 ----RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + T+ +N++ + Y + G L A +VV Sbjct: 127 HPRGLVLAPTRELANQINDVLMPL-AQMYGMTTTTVYGGVRYARQIRDLRAGADIVVACP 185 Query: 341 HVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + ++ + E + + Q + SAT + Sbjct: 186 GRLEDLLEQHALTLEKVEVAVIDEADEMADMGFLPPVKRLLGQVSFDAQVMLFSATLDHG 245 Query: 400 ELEKSGGDVVDQVVRPTGLLDPII---EVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 E + D + + T D +R A+ R ++ T TK Sbjct: 246 VDEVVNTFLTDPKIHSVDSATAAVDEMTHHVFETTQGDRHELVRTLASGKGRRILFTRTK 305 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L + L ++G LH ++ +R + G+ +V+V ++ G+D+ V Sbjct: 306 FQTQKLAKDLTKNGIPAAELHGNLSQNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVE 365 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQ 575 LV ++ +S + GR AR +G + + + + K Sbjct: 366 LVVQVEPP-----EDPKSFLHRSGRTARAGHSGDVVTIVLPNQRRRTRRMLHEAGLKVKP 420 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + +P+ L + R + + + ++ + Sbjct: 421 IEVT---HDSPEVLELVGESAEPRFGWTLEQSQPAGNPRRRHGKGGDGFAENGGRSGR-- 475 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQL 662 + G ++ + R Sbjct: 476 -NRSGGRNKDRGKDKGGKPFKSERKDR 501 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 106/625 (16%), Positives = 177/625 (28%), Gaps = 76/625 (12%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + + + F ++ + P +V+ A L E++E Sbjct: 10 DVVAFAGAAGRPDLTVTAVDGARPFLLSALAGQA--PVLVVTATGREADDLTSELRETLG 67 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD------- 135 +AV PS +T + S RL + + D Sbjct: 68 ADAVTQ-------------FPSWETLPHERLSPGADTVGRRLQVLRRLAWPDDAQYGAPL 114 Query: 136 VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVA+V ++ P L + L G D ++ L EL Y R D +RG F V Sbjct: 115 RAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAV 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DIFP +D + +RVE + +E+ L F + P + Sbjct: 175 RGGILDIFPTTTD-LPVRVEFWGDEITDLRAFSVADQRS----------------QPEVQ 217 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + EL V L E LE + + G+E L Sbjct: 218 VGTVHVYPCRELLLTADVRDRAATLKAEHESDAALAEMLEKLAQGIPVEGMEALIPALVP 277 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESH----VTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L D LP V+ + + T G P Sbjct: 278 GELQL----LTDVLPDGTHTVLLDPEKIRTRAADLA-RTGQEFLEASWTAAALGSSAPLD 332 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L + L VSA + + G D + R Sbjct: 333 PSGIDLGASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTV-HAEHAPAPRGSE 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + + L + +R AA ++ + + E L + L E Sbjct: 392 AEAEKLFATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASEL----------EAG 441 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R G VL G L+ GL +P LV + + D G + GR Sbjct: 442 EGPRPGTVGVLRGS--LQTGLTVPSQQLVLLAEPDLTGNRVAGVG----DGRRLPAKRRN 495 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + + + + + T G ++ + I +K Sbjct: 496 QVDPLALTAGDLVVHDEHGIGKFVEMIER------TVAGARREYLVIEYA---PSKRGQP 546 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQ 634 G P+ D + + + +Q Sbjct: 547 GDKLFVPMESLDQLSRYVGGEMAKQ 571 Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 63/211 (29%), Gaps = 28/211 (13%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 RV H + ++ EFDVLV ++ GLD+ + + + A+ G + Sbjct: 580 RVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVERAENLGLSQ- 638 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L Q GR R+ + K + ET R N E G G+ Sbjct: 639 ---LHQLRGRVGRSRERGYAYFLYPSE----KPLTETAYDRLSTIAQNNELG---AGMAV 688 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--------- 642 + D+ G + V D+ + + + + Sbjct: 689 AMKDLEIRGAGNVLGAEQSG-------HVAGVGFDLYVRLVGEAVEAFRAAADGTPITLP 741 Query: 643 MMQHAQNLEFE-EAAQIRDQLHQLRELFIAA 672 Q ++ +A D + R A Sbjct: 742 EEQKEVRIDLPVDAHIPPDYVTSDRLRLEAY 772 >UniRef50_Q0CMM5 ATP-dependent RNA helicase dbp4 n=35 Tax=Dikarya RepID=DBP4_ASPTN Length = 804 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 59/464 (12%), Positives = 130/464 (28%), Gaps = 31/464 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L + + LS T + + + + + Sbjct: 51 LPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLENLYR 110 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + T+ + E+ G ++ G + Sbjct: 111 KQWAEHDGLGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGKSLKEEQERLGKMN- 169 Query: 334 LLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 ++V + + ++ + L E + QT+ Sbjct: 170 -ILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTML 228 Query: 392 VSATPGNYELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQVDDLLSEIRQR 442 SAT + + + D L V P+ ++D L S IR Sbjct: 229 FSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVTPLPQKLDILWSFIRSN 288 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V + + + E G + +LH R++I + VL Sbjct: 289 LK--SKTIVFLSSGKQVRFVYEAFRHLQPGIPLMHLHGRQKQGGRLDITTKYSQAKHAVL 346 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 ++ GLD P V V LD + I +GR AR G+A+L+ D Sbjct: 347 FSTDVAARGLDFPAVDWVIQLDCP-----EDADTYIHRVGRTARYERDGRAVLFLDPSEE 401 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP--I 617 + + + +++ + Q + ++ ++ + K Sbjct: 402 ---QGMLKRLEQKKVPVEKINVKANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVY 458 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 V+ D + L++ L + A ++F + +++ Sbjct: 459 VQKDKEIFKLKDLDLEEFASSLG---LPGAPRIKFIKGDDTKER 499 >UniRef50_A8Q312 DEAD/DEAH box helicase family protein n=5 Tax=Chromadorea RepID=A8Q312_BRUMA Length = 782 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 63/452 (13%), Positives = 130/452 (28%), Gaps = 36/452 (7%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP---RERIVQAMEEIKEELAARRKVL 274 + + + P + + + Sbjct: 33 WQTIGLDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIPILQK 92 Query: 275 L--ENNKLLEEQRLTQRTQFDLE---MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + K + + + ++ ++ ELG +G + G+ F + Sbjct: 93 LKVRDMKGIRALIIEPTRELAMQTFTVVKELGRFTG-----LRCAVLVGGDRIEEQFQTV 147 Query: 330 PADGLLVVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 +V+ + I M +R + E + + + Q Sbjct: 148 HEKPDIVIATPGRLLHVIVEMDFRLSAVQVIVFDEADRLFEMGFAEQLHEVLKRLPENRQ 207 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-------IEVRPVATQVDDLLSEIRQ 441 T+ SAT + S + D V+ L + I ++ L R+ Sbjct: 208 TLLFSATLPKSIIAFSKAGLSDPVLVRLDLAEKISDKLSMMFLYCRTDDKLAAFLHLARE 267 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A NE+ +V T + E L + G L+S +D+V R I+ R E +L+ Sbjct: 268 VVAANEQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLI 327 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ G+D+P + + + + +GR AR GKAI Sbjct: 328 VTDIAARGVDIPLLDVAINYHFP-----SKPKLFVHRVGRVARAGRSGKAISLFGADEVP 382 Query: 561 MAKAIGETERRREK------QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + R K GI P G+ + +D L + + + Sbjct: 383 YVIDLFLFLNRPLKFATTSSVSSDEALIGIFPDGIIDREIDFLKNVHDNSD---ELDDLL 439 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 + P+ + + + + + Sbjct: 440 KKSENAMQKYKKTRPQPSAESVRRAKDEVKEA 471 >UniRef50_Q4U8S0 DEAD-box family helicase, putative n=2 Tax=Theileria RepID=Q4U8S0_THEAN Length = 570 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 61/485 (12%), Positives = 129/485 (26%), Gaps = 51/485 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA------ 259 + ++ ++ +E L + F I V Sbjct: 98 YQNPTIIQSKVIPLALEGKDLLIMMIQ-GSGKTASFLIPTLQRLVVSGVLKQLTKEKQAY 156 Query: 260 -MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + L L + + + ++ G + Sbjct: 157 NTRFGTKALVILPTRELAAQ-CFQVFKSLSKYLSSKAILLTGGIPIKEQENRLRQFPETI 215 Query: 319 GEPPPTLFD-YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P D + + + V + V + + + + L Sbjct: 216 ICTPGRALDMLINSSSINVENIEVVIMDEADKLLELG-----------------FRDECL 258 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA------TQ 431 + ++ QT+ SAT E +V+ V + + Sbjct: 259 QVLKYCNRNRQTMLFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMIPKEE 318 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + + ++ ++ TKR A + + LH ++ +R E + Sbjct: 319 YREACALYLCTKYSKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRFESVER 378 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + GE D L+ L GLD+P V V +D I +GR AR +GKA Sbjct: 379 FKNGEIDYLLASELASRGLDIPGVKTVINVDLPT-----DITRYIHRVGRTARMGSHGKA 433 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP-----QGLNKKVVDILALGQNIAK 605 I S K ++ ++ K+ ++ + + Sbjct: 434 ITLYVDEQRSQVKL---FLKKTSDIGATLSKNKKKVTSATLNKYKTKIDELEEKIKELLL 490 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + I D + +++ + A EFEEA + ++ Sbjct: 491 EE----NIEKDIKMCDATLKTHGDQDREKRKWFRSKKDKKMASKEEFEEANRKTQRMVDK 546 Query: 666 RELFI 670 + Sbjct: 547 EQKNE 551 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 102/649 (15%), Positives = 182/649 (28%), Gaps = 85/649 (13%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIAN--VIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPE 83 L G GS IA Q P + V+ N A +L E++ F P+ Sbjct: 73 ALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPD 132 Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 V +P +T S ++ + RL+ + E R +++ + Sbjct: 133 ARVRV-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT 179 Query: 144 -AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 A+Y + T G +D+ + +L Y Q + G + VRG +ID+ Sbjct: 180 TALYRMPPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL 239 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + R++LFD++V+ + FDP T + + + + P + Sbjct: 240 FPMGS-PLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR 298 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E + + +GIE Y Sbjct: 299 WRETFEGDPSR-----------------APIYKDIGNGVPSAGIEYYLPLFFDET----- 336 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 TLF YLP + LV + I + R L R L ++F Sbjct: 337 ATLFHYLPENAQLVF--TGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLFLSDDDF 394 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 LA + + G P+ + L + Sbjct: 395 YLLAKP--------------FARIVL--PAQPSGGWAAPLPNLALDRHADAPLAAFAAYL 438 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N RVL T + E + + EH R +E LG Sbjct: 439 ETTNNRVLFTVESAGRRETIAQLFAEHHLRPA---GSDSFAAWLETDERFALGVAP---- 491 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L G +P + + + G L + + S Sbjct: 492 ---LASGFAVPGEGYAIVTETELYGALGRRAGRR--------RQEQASNVDAMVRDLSEL 540 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 K + +Y + + + + + G + P+ + Sbjct: 541 KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKL---------YVPVAQLHV 591 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + +H L + A+ ++ +L L A Sbjct: 592 ISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAA 640 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 67/464 (14%), Positives = 131/464 (28%), Gaps = 43/464 (9%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F + D + P V + ++ A Sbjct: 656 FADSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQV 715 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q TQ ++ + + I SRF S + + D + + Sbjct: 716 ALLSPTTLLAEQHTQTFIDRFAD--WPVKIVELSRFKSTKEVNAAIQQIND----GSVDI 769 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + R + R + + + ++ATP Sbjct: 770 VIGTHKLLSSDVQFKRLGLVIIDEE--------HRFGVRQKEALKALRAEVDVLTLTATP 821 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + + D V T + V + + ++ + + +V Sbjct: 822 IPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNE 881 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E+ LEE R + H + E ++RD +VL+ ++ G+D+P Sbjct: 882 VETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVP 941 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + + ADK G + L Q GR R+ + +A+ + +RR Sbjct: 942 SANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQAYAYLLVHDP----QALTKQAQRRL 993 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + + EE G G + D+ G + E + + + L Sbjct: 994 EAIQQMEELG---SGFYLAMHDLEIRGTGEVLGDKQSG-------EIHEIGFQLYTEMLN 1043 Query: 634 QKIHELE-GLMMQHAQNLE-------FEEAAQIRDQLHQLRELF 669 + L+ G L A D ++E Sbjct: 1044 DAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERL 1087 >UniRef50_Q4P9P3 ATP-dependent RNA helicase DRS1 n=3 Tax=Fungi/Metazoa group RepID=DRS1_USTMA Length = 932 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 70/533 (13%), Positives = 135/533 (25%), Gaps = 82/533 (15%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELAARRK 272 FD L L+ + I TI V R Sbjct: 337 AFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLT 396 Query: 273 ---VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 ++ + T+ +G RF G + L Sbjct: 397 WRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLC-VGGLSVKSQEAEL 455 Query: 330 PADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL-A 386 +V+ I + + D + E L + + + A Sbjct: 456 KLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGA 515 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP------------------- 427 QT+ SAT + + + V + Sbjct: 516 RQTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAGADG 575 Query: 428 ------------------VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 Q LL + + ++ +K++A L Sbjct: 576 LSGIQDQPATWISGGRKSEDAQRPALLLSLC-TRTFTSQTMIFVRSKKLAHQLKIVFGLL 634 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G LH D+ +R++ + D R G+ D L+ +L GLD+ V V D Sbjct: 635 GLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMP----- 689 Query: 530 RSERSLIQTIGRAARNVN-GKAILYGDKITPSMAK----------------------AIG 566 + + +GR AR G+A+ + M K + Sbjct: 690 GQFEAYLHRVGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMC 749 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALG--QNIAKTKAKGRGKSRPIVEPDNVP 624 ET R + + + L +++ N A ++ + Sbjct: 750 ETLERLKPEVDAVLREEKEEKALRIAEMELKKGENMANHADEIFSRPKRTWFQSGSEKTQ 809 Query: 625 MDMSPKALQQKIHELEGLMMQHAQ----NLEFEEAAQIRDQLHQLRELFIAAS 673 KA Q + Q + + + + +R ++ + R+ ++ Sbjct: 810 ASALSKAGYQATMDARSSSKQKDKYAGLSRKKRRSKMMRQEIERERKDASGSA 862 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 125/433 (28%), Gaps = 35/433 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ D LT S + P + + I+ + Sbjct: 517 FESSFLFKETVDQLTAIAASKADMESERPMDRLICGDVGFGKTEVAIRAAFKSVMGGKQV 576 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + E M++ + + R L + + Sbjct: 577 AILVPTTVLAEQHYRNFRERMSDYPVTVELLSRFRT------AAEQRKTVQGLADGRVDI 630 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H I + + +G + +SATP Sbjct: 631 VVGTHRLISKDILFKDLGLVVIDEEQRFGVLHKERFKE--------MFKLVDMLTLSATP 682 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L S D T L+ I + + ++ I + + +V Sbjct: 683 IPRTLYLSLMGAKDMSTIETPPLNRIPTETLICPYDERIIRDAINRELSRQGQVYFLHNR 742 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E + + +++ + R + H +D E +++ + G DVL+ ++ GLD+P Sbjct: 743 VHSIEMMRDKIKKLCPKARCVIGHGQMDEHELEDVMHEFVSGAADVLISTTIIESGLDIP 802 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD+ G L Q GR R + M RRR Sbjct: 803 NANTIIIDRADRFGLA----DLYQLRGRVGRAQHKAYAYLLLPRE--MMTQGE--ARRRI 854 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K G G + D+ G A+ N+ D+ L+ Sbjct: 855 NAIKQYSSLG---AGFKIAMRDLEIRGAGNILGTAQSG-------HIVNIGFDLYCALLK 904 Query: 634 QKIHELEGLMMQH 646 Q I +L+G ++ Sbjct: 905 QAIAKLKGEKVRA 917 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 20/239 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + P +L L + V + + F A ++ + ++ PN Sbjct: 6 NPLEQIAAAPPLEAKL--ALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVR 63 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 ++ E+ ++FP+ + P D + A + RL + Sbjct: 64 TQETMHNELLQWFPDA---------------LFFPEIDRAPVEGALPDPESIAERLGIVQ 108 Query: 129 AMLE-RRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 + + VVV + +++ P ++ + L +D+ +L++LAE Y Q Sbjct: 109 RLTSVKGRQVVVLTRASLDDEVPSPAALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQ 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 RG F VRG ++D+F + +R+ELFD+E++ L FD T V + T+ Sbjct: 169 VSARGQFAVRGGILDVFSFHH-SLPVRIELFDDEIDSLREFDLDTQISVQHLDTVTLLL 226 Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 62/249 (24%), Gaps = 39/249 (15%) Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + + S++R+ RV V + E L + L L Sbjct: 293 DFVVDEIKRERFFSQLREWRTEGWRVHVFCNNEGEIERLHDLLPP--VEADAL------- 343 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +G + G P + + DA+ G R+ R+ + RA Sbjct: 344 -------QFTVGTLNC---------GFTFPSAKVAVLSDAELFGRYRNTRARRMALRRAR 387 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + I + + + R E + G T + L Sbjct: 388 EQASRSQIDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTEEVLVLAF---------- 437 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A P+ + V + + L A+ + +L Sbjct: 438 ----ADDARLYVPLEQSYLVSRYVGVGKKNPALSVLGDGKWAKAKKNAEKAVFDYASKLL 493 Query: 664 QLRELFIAA 672 + A Sbjct: 494 AVHAERETA 502 >UniRef50_Q2H4C0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H4C0_CHAGB Length = 602 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 46/390 (11%), Positives = 99/390 (25%), Gaps = 36/390 (9%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + + + I + +++ + + Sbjct: 147 NPIHLGYDVIGIAQTGSGKTAAYLIPILNKLMGKAKKLAAPRPNPATFQEGVDQRVRAE- 205 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + +++ NE G L +++ Sbjct: 206 --PLVVIICPTRELAVQIFNEARKFCYRTMLRP--CVVYGGGALRDQAQQLQKGCDILIA 261 Query: 339 ESHVTIPQIGG--MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 I I R R + E L A Sbjct: 262 SPGRLIHFINKPETLTLRRVRYMVIDEADEMLMDDWSEELTTILSGGA------------ 309 Query: 397 GNYELEKSGGDVVD-QVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + + + + V G + + + + L+ I+ R Sbjct: 310 ----RDLAQTHLAETHVRLRVGRAGSSHANIKQNVIYVDPSLKKQALIDLIKSL--PPTR 363 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ +KR AE++ ++L G +H D + +ER +R R G++ +L+ + Sbjct: 364 TIIFVNSKRAAEEVDDFLFNLGMPCTSMHGDRNQLEREAAMRGFRGGKWPILIATGVTAR 423 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ V V D IGR R G A + +A + Sbjct: 424 GIDVRNVMHVINYDLPSM-EYGGIEEYTHRIGRTGRIGHRGLATSFYSDRDEPIASVLTR 482 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDIL 597 T ++ P+G + Sbjct: 483 TLMETHQEIPDF-LQPYVPEGATADNLKFE 511 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 61/441 (13%), Positives = 127/441 (28%), Gaps = 36/441 (8%) Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 D + P V + ++ + + Sbjct: 566 EDTPDQSKATADVKRDMQSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVDGKQAAVLVPTT 625 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q + + + + ++ +RF S + E L + + ++ +H Sbjct: 626 ILAFQHYKTFSDRLKDF--PCTVDYLNRFKSAKEKKETLQRLAE----GKIDIIIGTHAL 679 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + E + + + T+ ++ATP L+ Sbjct: 680 LSKDVKFKDLG---VMVVDE-----EQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQF 731 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDL 462 S D V T + V DL+ I +V + ++ Sbjct: 732 SLMGARDLSVINTPPPNRQPIETEVHVFDHDLIRDAIYYETERGGQVYFVYNRVKGLGEM 791 Query: 463 TEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + ++ + H ++ + E+I D ++DVLV N++ G+D+P + + I Sbjct: 792 SSLIKGLCPDLSIATAHGQMEGHQLEEVILDFIDRKYDVLVCTNIVESGVDIPNANTIII 851 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 +A G L Q GR R+ I K+ + E Sbjct: 852 NNAHHFGLS----DLHQLRGRVGRSNKKAFCYLLAP-------PISTLPGDSRKRLQTLE 900 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 +H G + D+ G + + DM K L + I EL+ Sbjct: 901 QHSELGSGFQIAMRDLDIRGAGNLLGGEQSGF-------MAEIGFDMYQKILDEAIRELK 953 Query: 641 -GLMMQHAQNLEFEEAAQIRD 660 ++ E+ + D Sbjct: 954 QNEFRDLFKDQLEEKKDFVSD 974 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 19/241 (7%) Query: 8 NSAFKPSGDQPEAIRRLEEGLE-DGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAP 65 A + +++L +G+ + L G+TGS TF A + + Sbjct: 3 IQAVLQLYQRDSRLQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWEMANSVNHLFILN 62 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 ++ AA + +++ + YF + + SS + +R Sbjct: 63 DREEAAYFHNDLESITQGLDIFYFPDSFKKAGFFNEINSSHSM-------------LRTE 109 Query: 126 ATKAMLERR--DVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYA 182 A V+V A++ + Y M+ L VG ++ +L +L + Sbjct: 110 ALMKFSGNAVHKKVLVTYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFE 169 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 D ++ G + +RG ++DI+ ++ R+ELF E+++ + LFDP + + + T Sbjct: 170 FTDFVYEPGQYALRGGILDIYSFGNEK-PYRIELFGEDIDSIRLFDPESQLSERKLNQVT 228 Query: 243 I 243 + Sbjct: 229 L 229 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 37/376 (9%), Positives = 84/376 (22%), Gaps = 74/376 (19%) Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-------QIGGMYRGDRA----- 356 + +G +L +LP + ++ + + ++ + + Sbjct: 229 LIANMDTQGLKHEKASLLGFLPENTIVWMKDPGYVQDVILQLEERLDAFLQTGQQVKVGD 288 Query: 357 -RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 L E F A+ L+ + Q ++ P Sbjct: 289 DDTIALSEADFVKAHAMMQDLLRRHCIVFGSRQWWE----------------DTNRAFIP 332 Query: 416 TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 E Q + L+ ++ + + R E L E+ Sbjct: 333 LNFETQ--EQPVFNRQFEMLIKDLDAHNKNKYTLFIFAENARQLERLRSIFEDLK----- 385 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 D + + G + LV D + Sbjct: 386 --------------ADFTFFPIP-----SPVSHGFIDHSLKLVCYTDHQIFQRYHKYKV- 425 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 KAI +A Y+ I G ++ + Sbjct: 426 ------KQAYNKNKAITMKTLRE---LQAGDFVTHIDHGVGVYSGLQKIEVGGKMQEAIR 476 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 I+ ++ + + ++ ++++L + + Sbjct: 477 IIYKNNDLLYVNINS---------LHKISKYSGKEGVEPRVNKLGSDAWDKLKEKAKTQV 527 Query: 656 AQIRDQLHQLRELFIA 671 I L QL A Sbjct: 528 KDIAKDLIQLYAARKA 543 >UniRef50_Q5ZBH5 DEAD-box ATP-dependent RNA helicase 25 n=13 Tax=Magnoliophyta RepID=RH25_ORYSJ Length = 594 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 56/482 (11%), Positives = 127/482 (26%), Gaps = 68/482 (14%) Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 L+ + + Y R Q + + + + + Sbjct: 138 LKAVKDAGYERMTQVQE------------------ATLPV--------ILQGKDVLAKAK 171 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 F + + L L +E ++L + + Sbjct: 172 TGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRS 231 Query: 293 DLEMMNELGYCSGIENYSRFLS-GRGPGEPPPTLFDYLPADG---LLVVDESHVTIPQIG 348 + G E S + + P L D++ + + + + Sbjct: 232 LGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEAD 291 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + + QT+ SAT + S + Sbjct: 292 RLLD-----------------MGFRRDIERIIASVPKERQTLLFSATVPEEVRQISHIAM 334 Query: 409 V-DQVVRPT---------GLLDPIIEVRPVATQVDDLLSEIRQRAAIN--ERVLVTTLTK 456 + T + + + P+ L +++ A + +V++ T Sbjct: 335 KKNYKFINTVKDGDEETHAQVSQMFMIAPLDLHFSILYDVLKKHVAEDADYKVIIFCTTA 394 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + + + E L + +R +HS R ++ + R +LV ++ G+D P+V+ Sbjct: 395 MVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKSRGLILVSSDVSARGVDYPDVT 454 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQ 575 LV G + I +GR R G+ +L +I + + Sbjct: 455 LVIQ-----VGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWEKYFLSSIKDL---SISE 506 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 T + V + + A G S + + + + Q Sbjct: 507 ATVPSVDSSTQTIVKDAVRKVEMRSKECAYQAWLGYYNSNKTIGREKSRLVKLAEEFSQS 566 Query: 636 IH 637 + Sbjct: 567 ME 568 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 106/661 (16%), Positives = 198/661 (29%), Gaps = 69/661 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGL--AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 P Q R L + + + G S + +A +IA++ P +++ Sbjct: 6 IIPLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLD 65 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ + E+ P++ P S+T + V+ + +R+ Sbjct: 66 SAEEVTAGLAEYLPDDR------------DPTLWPVSETLPYELLPVDRSVSALRVELLA 113 Query: 129 AMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + R V +VA A+ L P HL VG + A + L + Y Sbjct: 114 RLARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVV 173 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 174 QAPGQVGRRGGIIDVFPPVGD-HALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPL 232 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + L L E + L+ + G+E Sbjct: 233 EVSLAQRD------AALSALRQMDTTTLRPEVAEEW-------ERSLQRLERGQVTVGLE 279 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + L +L DYL L+V ++ +E Sbjct: 280 LLAPLLLPEPA-----SLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAGE 334 Query: 368 LPSALDN---RPLKFEEFEALAPQTIY--VSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 LPS + + + A Q + V + P Sbjct: 335 LPSGMPRPYLDWQAVADRLSGARQIAFGPVPTHWSPPV-----------AIIPDARPVYG 383 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 E+ A ++D L++++R+R A V++ + + LTE LEEH R Sbjct: 384 RELPAYAGRLDALVADVRERLADGWAVILAS---EQSGRLTEVLEEHDIFPRT--RKRPA 438 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 V V + L G + + ++ + D + G+ R Sbjct: 439 GNGRIAPPPEPPTPGTVEVVYSRLNGGWEHGGIKVLLLTDREMFGYRRVAAP-------- 490 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + +Y + G+ ++ + + + Sbjct: 491 ----APRRRAARRPPLLPSLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAAND 546 Query: 603 IAKTKAKGRGKSRPI--VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + P + + + + + + A L AA+ Sbjct: 547 RLYLPVDQIDRITPYEGAGIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREAT 606 Query: 661 Q 661 + Sbjct: 607 E 607 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 71/520 (13%), Positives = 141/520 (27%), Gaps = 55/520 (10%) Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD------ 228 +L L + QR VR ++ + A F + + + Sbjct: 569 KLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATEGVAFGPDTDWDRELEESFPYV 628 Query: 229 ----PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 L P V + ++ A + Sbjct: 629 ETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTTI 688 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q + + + R + + L + V+ +H + Sbjct: 689 LALQHYHTFRSRLAPFPVRIEMLSRLRSR------KEQTQILQQLERGEIDVIIGTHRLL 742 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + +G + + ++ATP L + Sbjct: 743 QRDVRFKKLGLVIIDEEQRFGVAHKEHF--------KRLRTNVDVLTMTATPIPRTLYMA 794 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLT 463 + D V T + V D L+ I + + +V + + Sbjct: 795 LSGIRDLSVITTPPQERTPIRTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVL 854 Query: 464 EYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 E LE+ H +D E +++ EFDVLV ++ G+D+P V+ + I Sbjct: 855 ERLEKLVPEARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIID 914 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 A + G + L Q GR R+ + +A Y + R + + E Sbjct: 915 RAHQLGLTQ----LYQLRGRVGRSHH-RAYAYVL---YDANVPLSAEAVARLEAIQEATE 966 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G + V +D+ + L + E++ Sbjct: 967 LG---AGFQIALRDLEIRGAGNVLGPEQSG-------HVAAVGLDLYTRMLATAVEEIKQ 1016 Query: 642 -----LMMQHAQNLEFEE---AAQIRDQ--LHQLRELFIA 671 +L E + + D+ L A Sbjct: 1017 GRPIEEPEAVTVDLPIEATIPESYVGDEGVRIDLYRRLAA 1056 >UniRef50_Q7A5D2 SA1387 protein n=64 Tax=Staphylococcaceae RepID=Q7A5D2_STAAN Length = 448 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 47/459 (10%), Positives = 110/459 (23%), Gaps = 20/459 (4%) Query: 207 SDDIAL-RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + L ++ + + + I +T+ + + Sbjct: 1 MAKHPFEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLL 60 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L + + T+ + + + + G Sbjct: 61 PLMQLIDSE----IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKD 116 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 A L++ A + E + L Sbjct: 117 RQRCNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLE 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQ 441 SAT + IE + T+ + + Sbjct: 177 DNANIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLN 236 Query: 442 RAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ ++ A DL L E G +V +H + ER + ++ +R EF Sbjct: 237 LIDILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQY 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 ++ +L G+D+ VS V D +GR R G AI Sbjct: 297 VIASDLASRGIDIEGVSHVINFDVPN-----DIDFFTHRVGRTGRGNYKGVAITLYSPDE 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 I + + E ++ + + K + +S+ Sbjct: 352 EHNISLIEDRGFVFNTVDIKDGELKEVKAHNQRQAR---MRKDDHLTNQVKDKVRSKIKN 408 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + +++ + + + ++ + Sbjct: 409 KVKPGYKKKFKQEVEKMKRQERKQFSKQQNRQKRKQNKK 447 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 84/654 (12%), Positives = 183/654 (27%), Gaps = 115/654 (17%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + VT + +++ L R +V++ N T A L+ E F Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFI-------------SA 105 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 Y+P + + +++ R+ A +L ++ SV+ P Sbjct: 106 SDLVYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++ Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF EE+E + FDP T + + + R + P Y+ Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSD---------------------- 262 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 E K + + + + E GY E + Y +L Sbjct: 263 EQKKEYQNILKYYSSSLHIPEIPEAGYGIYYEELVPLVRENHGI------LSYFSEPPIL 316 Query: 336 VVDES----HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + + R + ++ + E + Sbjct: 317 LFPSPNSVNQRILHLEREYLSLFEKRSQEVLCAPPDKLLSFGEEFRVLSELVG-----LS 371 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 P + ++ ++ +I + A +V Sbjct: 372 FVGLPPRNGSDLV-------SCLKEAP--------AFKGKIREVREKISELRAEGGWKIV 416 Query: 452 TTLTKR-MAEDLTEYLEEHGE--------RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 T + + L E+ G H + ++ +LR Sbjct: 417 LTSSFEAQTKRLQGLFEKEGIVLLNEGATEPIPFHLGKHKSDAFLVLSELRN-------- 468 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 G ++ + + D G ++ R + + + D Sbjct: 469 ------GFIFENQKILILSENDIFGREYKRKT------RFKKQNSKALQSFIDLKEGDPV 516 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 I R K ++ N G + + + G + P+ + Sbjct: 517 VHIHHGVGRFLKIERTN------AGGKERDFLKLEYAGGDSL---------FVPLDQISL 561 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE---LFIAAS 673 + + ++ L + ++ + + + L Q+ + Sbjct: 562 IQRYIGGTE-SPRLDSLGKNTWKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYA 614 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 60/421 (14%), Positives = 115/421 (27%), Gaps = 35/421 (8%) Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 D + + P V + I+ Sbjct: 634 TPDQIEAIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTIL 693 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q +E SRF + + + ++ +H + Sbjct: 694 ALQHYNTFKNRFRNY--PLRVELVSRFKTS----AEIREILSDFSLGKIDMIIGTHAILS 747 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + + + ++ATP L + Sbjct: 748 SKLKPKNLGLLIIDEE--------QRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMAL 799 Query: 406 GDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + + T + +E + D + IR + +V E T+ Sbjct: 800 TGIRELSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETK 859 Query: 465 YLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 YL E V LH + E E + D ++D+LV ++ G+DMP V+ + + Sbjct: 860 YLGEIVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKR 919 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 AD G + L Q GR R+ + + E +R +E Sbjct: 920 ADLFGLSQ----LYQIRGRVGRSDRKAFAYLLLPKD----RVVTEQAEKRLNTIYEYQEL 971 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G G + D+ G K + V D+ + L++ I ++G Sbjct: 972 G---SGFKVAMRDLEIRGAGNLLGKEQSGD-------IMEVGFDLYVRMLEEAIARIKGE 1021 Query: 643 M 643 Sbjct: 1022 E 1022 >UniRef50_D0MSW7 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MSW7_PHYIN Length = 518 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 54/460 (11%), Positives = 110/460 (23%), Gaps = 85/460 (18%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ + F + L Sbjct: 75 PTPVQAHCIPP-ILAGRDVIGCAQTGSGKTAAFALPILHTLSKDPYG--------PYALV 125 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + + G ++ + P D+ Sbjct: 126 LTPTRELAFQIADQFNAFGSSMA-VRCAVIVGGVDMLKQSLTLQQRPHIIVATPGRFRDH 184 Query: 329 L-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L AD + +V + + + + + Sbjct: 185 LLRADPPNISLVKYVVLDEADRLL-----------------DVSFAKDLSFIFDKLPTKR 227 Query: 388 QTIYVSATPGNYELEKSGGDVVD--------QVVRPTGLLDPIIEVRPVATQV------- 432 QT+ SAT + D V+ L P ++ Sbjct: 228 QTLLFSATMTANLDRLEQTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYLM 287 Query: 433 -----------------------------DDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + LL +++ T +M E + Sbjct: 288 KMLDPNEEEEEESNRKVTKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELVG 347 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E E G + LHS + R+ + + G +L+ ++ GLD+PEV +V D Sbjct: 348 EIGNELGTKCVTLHSMLSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFDL 407 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE-------KQ 575 R I +GR AR G+AI + + + I + ++ + Sbjct: 408 P-----RDADDYIHRVGRTARAGRSGQAISLVTQHDIELLQNIEDKVGKKMDDYETDAPE 462 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 +K + + + G + K + + + Sbjct: 463 KKVLKLLNDVTTATRIAKMKLTERGFDDKVHARKTKRQEQ 502 >UniRef50_P54475 DEAD-box ATP-dependent RNA helicase cshB n=22 Tax=Bacillaceae RepID=CSHB_BACSU Length = 438 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 58/438 (13%), Positives = 119/438 (27%), Gaps = 18/438 (4%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 EL ++ + + + K + + L + Sbjct: 10 ELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKIDP- 68 Query: 275 LENNKLLEEQRLTQRTQFDLEMM--NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 K + + +T T+ + L G E G D L Sbjct: 69 ---AKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQ 125 Query: 333 GLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 LVV I +A + E L Q + Sbjct: 126 PHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLV 185 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVATQVDDLLSEIRQRAA--IN 446 SAT + + IE + ++ D + + Sbjct: 186 FSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLNP 245 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +V TK A+ + +YL G ++ LH + ER ++++ + EF ++ +L Sbjct: 246 YLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDLA 305 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI 565 G+D+ VS V + + +GR AR +G+A+ + + Sbjct: 306 ARGIDIKGVSHVINYELP-----DDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRL 360 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + E + E +K + + + K + Sbjct: 361 EKMGIEFEYLELEKGEWKKGDDRQRRKKRKKTPNEADEIAHRLVKKPKKVKPGYKKKMSY 420 Query: 626 DMSPKALQQKIHELEGLM 643 +M +Q+ ++ + Sbjct: 421 EMEKIKKKQRRNQSKKRK 438 >UniRef50_B8NRZ0 ATP-dependent RNA helicase, putative n=4 Tax=Eurotiomycetidae RepID=B8NRZ0_ASPFN Length = 696 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 44/416 (10%), Positives = 104/416 (25%), Gaps = 36/416 (8%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + F I + + L Sbjct: 244 LLAGRDVLGAAKTGSGKTLSFLIPAIEML----SALRFKPRNGTGAIIVSPTRELALQIF 299 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + L + G E P L D+L + Sbjct: 300 GQVRELLAHHSQTY-GIVIGGANRRAEAEKLMKGVNLLVATPGRLLDHLQ-------NTQ 351 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA-LAPQTIYVSATPGNY 399 + + + + E L ++ + + QT+ SAT Sbjct: 352 GFVFKNLRTLISTINLFRIAIDEADRILEVGFEDEMRQIAKILPSENRQTMLFSATQTTK 411 Query: 400 ELEKSGGDVVD-QVVRPTGL---------LDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + + L+ + + L S +++ +++ Sbjct: 412 VEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLR--KKI 469 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V + + E L V LH +R + + L+ ++ G Sbjct: 470 IVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARG 529 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGE 567 LD+P V + D R I +GR AR G+++++ K + Sbjct: 530 LDIPAVDWIIQFDPP-----DDPRDYIHRVGRTARGSNGKGRSLMFLQPSEVGFLKHL-- 582 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + + ++ ++ + K+ +G ++ Sbjct: 583 --KEARVPVVEFDFPTQKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSL 636 >UniRef50_A6Q863 ATP-dependent RNA helicase n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q863_SULNB Length = 447 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 53/476 (11%), Positives = 122/476 (25%), Gaps = 73/476 (15%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ +L ++ + + + E + Sbjct: 21 YARPTPIQQKLIPALLDGQNAI-ASAQTGSGKTLAYLLPALQQINPEAE---KVTHHYPR 76 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----------------LGYCSGIEN 308 + T+ + + E G +E Sbjct: 77 LF------------------ILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVET 118 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P +++ A + + H+ + + M+ Sbjct: 119 ERLKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGY---------- 168 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR-- 426 K Q I VSAT ++ + + I + Sbjct: 169 -------LEKIFTMMTERSQKIIVSATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQ 221 Query: 427 ----PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + ++ + LL+ + + E+VL+ K +A+ + E L +V LH + Sbjct: 222 MLYPVLRSKKEALLAWLIS-SGNYEKVLLFVRKKELADGVAESLRSWDYKVGILHGERTH 280 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 ER + + R G + +LV ++ GLD+ ++ +V D + I +GR Sbjct: 281 QERKKSLNAFREGRYRILVATDIAARGLDISDLDVVINYDIPHV-----KHDFIHRVGRT 335 Query: 543 ARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G AI + + + K+ E + + + Sbjct: 336 GRAGREGIAITLVSPDEIEQLHDLQKVLGGKIKEVILPEYAPKEVKARGFLLHGPQRRKK 395 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + + KA + N + + Sbjct: 396 STSVKRESASRPGVKKGKKRKTTKRDGFKAFDAA----KKTKEAKTPNKKRGRGKK 447 >UniRef50_A8R0I3 ATP-dependent RNA helicase (Fragment) n=7 Tax=Streptomyces RepID=A8R0I3_9ACTO Length = 626 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 84/290 (28%), Gaps = 11/290 (3%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ +++ G + L G L ++V Sbjct: 1 ILTPTRELAMQVSDALQPYG-DVLGLKLKVVCGGTSMGNQIYALERGVDILVATPGRLRD 59 Query: 346 QIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 I DR + L E + + Q + SAT N Sbjct: 60 IIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLFSATLENEIDTLV 119 Query: 405 GGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 +VD V + + + D AA R ++ T+ A+ Sbjct: 120 KRYLVDPVTHEVDPSAGAVSTMTHHVLVVKPKDKAPVTAAIAARKGRTIIFVRTQLGADR 179 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + E L + G R LH + R + D + G +VLV ++ G+ + + LV + Sbjct: 180 VAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAARGIHVDGIDLVLNV 239 Query: 522 DADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETER 570 D + + GR AR +G + + E Sbjct: 240 D-----PAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAG 284 >UniRef50_B3KM65 cDNA FLJ10383 fis, clone NT2RM2002100, highly similar to Probable ATP-dependent RNA helicase DDX52 (EC 3.6.1.-) n=5 Tax=Chordata RepID=B3KM65_HUMAN Length = 413 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 52/381 (13%), Positives = 110/381 (28%), Gaps = 37/381 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ + F+I P + L Sbjct: 1 MPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQPANKG-------FRAL 52 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + E ++++ T F + M+++ + P L Sbjct: 53 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 112 Query: 328 YLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEA 384 L D + + + + + ++ + ++ + Sbjct: 113 LLKQDPPGIDLASVEWLVVDESDKLFEDG--------------KTGFRDQLASIFLACTS 158 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA----TQVDDLLSEIR 440 + SAT + ++ + + G + +E L +R Sbjct: 159 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAVR 218 Query: 441 QRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + VLV + A++L L G V +H++ +R + R G+ Sbjct: 219 ELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIW 278 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VL+ LL G+D V+LV D S I IGR R GKAI + + Sbjct: 279 VLICTALLARGIDFKGVNLVINYDFPT-----SSVEYIHRIGRTGRAGNKGKAITFFTED 333 Query: 558 TPSMAKAIGETERRREKQQKY 578 + +++ ++ Sbjct: 334 DKPLLRSVANVIQQAGCPVPE 354 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 100/658 (15%), Positives = 195/658 (29%), Gaps = 94/658 (14%) Query: 21 IRRLEEGLEDGLAHQTLLGVTG-------SGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + ++ L+D A +TL G S + + IA R +++ N+ A L Sbjct: 4 MEKILNLLKDNQALRTLDTDNGTIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFNL 63 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 Y + E Y P+ ++ + + + + R++A AM + Sbjct: 64 YKTLTELV---------------NQVVYFPADESLRVESVAYSYELLGERINALYAMTQD 108 Query: 134 RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++ V + ++ P DL+ K ++ L G ID + + L + Y + Sbjct: 109 KPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFY 168 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RGEV+D++ + D +R+E FD+E+E +S +D + + + I I P T + Sbjct: 169 YSRRGEVLDVYTIQYD-HPVRIEFFDDEIEEISFYDKDSQRRTNKIESIDILPATDMMYE 227 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + Q + K + L Q D+E + Y I Y Sbjct: 228 DDGLSQVEAS------IQTLKDKMTVKDDFKDELEQTYALDIESLKAHDYNPRIYQYLGL 281 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS-A 371 D ++ + + L E G + Sbjct: 282 FPETATIMDYAR-------DYTIITASLASILASYKTYMEENYLYYHELEEIGQMIRGLK 334 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L N P + + + + + V+ +Q Sbjct: 335 LINNPQTILKRQNVDFVRFRENDQQI--------MFMTQPVMISMANEK------IFISQ 380 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + DLL RV++ KR + L +H Sbjct: 381 LKDLL--------TYNRVMIGVDEKRQIDVLVNLFTDHAIPFTL----------TSATNK 422 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + G L L G++ E V + + +++ I+ Sbjct: 423 IYDGVNLFL---GHLPCGMNFVEEKTVLLTSQELFKVQETKKKYIKYRDATK-------- 471 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 + K +Y + G++K + I G +I + Sbjct: 472 ----ISDYNELKVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHIAYKGNDILYVPVEQF 527 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 R D P +IH L + ++ + D L L Sbjct: 528 QLIRKYSSRDGKP---------PRIHALGSPKWAKEKARVRQKVDGLADDLINLYAER 576 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 128/432 (29%), Gaps = 35/432 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ E D T P + + ++ A Sbjct: 594 FESEFGYELTPDQAQAVEEIKKDMETPRPMDRLLCGDVGFGKTEVALRACFKAIVSKKQC 653 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 +Q + + + L+ + + L + + Sbjct: 654 AFLCPTTILSSQHYRTMQKRFEKFPVN------IALLNRFTTTKEKKQILSDLKEGNIDL 707 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + R + + + ++ATP Sbjct: 708 LVGTHRILSKDVEFKDLGLLCIDEE--------QRFGVRQKEKIKNLRKTIDVLTLTATP 759 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L+ S + T L+ + V+ + L+ I + + N +V Sbjct: 760 IPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIKQVIERELSRNGQVFYLHNR 819 Query: 456 KRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 ++ L+ R+ H +D E +++ D ++D+LV ++ G+D+P Sbjct: 820 TENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTIIETGIDIP 879 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I +ADK G + L Q GR R+ +A+ E ++R Sbjct: 880 NANTIIIENADKFGLAQ----LYQIKGRVGRSARIAYAYLLYTKD----RAMTEEAQKRL 931 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + G G + D+ G + D V DM K LQ Sbjct: 932 TAIKEFTQLG---SGYKIAMRDLSIRGSGDILGGEQAGF-------IDQVGFDMYMKILQ 981 Query: 634 QKIHELEGLMMQ 645 I E +G + + Sbjct: 982 DAIDEKQGKIKE 993 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 121/435 (27%), Gaps = 35/435 (8%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + ELF + D P + + ++ A Sbjct: 706 QYELFASQFAFEETPDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNS 765 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q + + LS G + + + L A Sbjct: 766 GYQVAVLVPTTLLAGQHEDNFKDRFAD------WPIRVETLSRFGGKKYQDQVLEDLAAG 819 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + +V +H + + + R + + ++ + Sbjct: 820 KVDIVIGTHKLLQKDVKFANLGLMIVDEE--------HRFGVRHKERIKAIQSDVDSLSM 871 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLV 451 +ATP L + + D + T + V + + L+ I + +V + Sbjct: 872 TATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVYL 931 Query: 452 TTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 E + E + E RV H ++ ++++ +F+VLV ++ G Sbjct: 932 LHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETG 991 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 +D+P + + I ADK G + L Q GR R+ + K + Sbjct: 992 IDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHHQAYCYLLVPS----VKGLKGDA 1043 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 ++R + G G D+ G K + + + Sbjct: 1044 KKRLTAIERANTLG---AGFMLASEDLEIRGAGEILGKQQSGN-------MQAIGFSLYM 1093 Query: 630 KALQQKIHELEGLMM 644 L++ ++ Sbjct: 1094 DMLERATKAIKAGKE 1108 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 99/703 (14%), Positives = 198/703 (28%), Gaps = 85/703 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-----IADLQRPTM 61 L F P+ +Q I + ++ L + + +A++ R + Sbjct: 39 LTDIFTPTNEQLFPIDKAQKRW--------LYPAYAAAGSLWLASLSDCPVANVANRLKV 90 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ ++ Q+ E+ + V P +T + S ++ I Sbjct: 91 VVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYDELSPHQDIVS 135 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R++ M + +++ S+ + P + L+VG I D LA Sbjct: 136 ERINLLTDM--PKQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAG 193 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y D F+ G F VRG VIDIF LR++LFD E+E + F+P T + +ST Sbjct: 194 YRAVDNVFEPGEFAVRGSVIDIFAMG-QPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTL 252 Query: 241 FTIYPKTHYVTPRERIVQAM--EEIKEELAARRKVLLENNKLLE-EQRLTQRTQFDLEMM 297 + + + + +L K + + L E L + + Sbjct: 253 MDLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNF 312 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPP---------TLFDYLPADGLL--VVDESHVTIPQ 346 + + + D+ L ++ I + Sbjct: 313 AAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFPKDTLFIIDE 372 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + D + R + ++A L +S Sbjct: 373 NTAEAQADYWSQIQRRYEERRHDID-KPIVEPTLLYLPSNSLNEMLNA-YPRVILSQSDL 430 Query: 407 DVVDQVVR-PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE-----------RVLVTTL 454 D L + PV+ Q + L E+ A+ +LV Sbjct: 431 AAADNTQSGKVKLPALMPPELPVSHQKAEPLLELLNYASAGWDDNTTEAALARPILVVAE 490 Query: 455 TKRMAEDLTEYLE-EHGERVR-----YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 T E L E + + +L S++ ++ + V + I + Sbjct: 491 TAGRREILLELFRGKLNVQTFDSLQQFLGSELYQQSLIKNTASASNTKPTVGLTIAPIER 550 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G + + L I + G + ++ + + S I + Sbjct: 551 GAVI-DQHLSIISETQLFGRQVLQTR---RRRQSDVSEEFLVKSVTELTEGSPVVHIDQG 606 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 R + G + I A P+ + Sbjct: 607 IGRYHGLITLDIGEGEQ---------------EFIHLKYADDASIYVPVANLQLISRYSG 651 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 +H++ A+ E+ + +L ++ A Sbjct: 652 GDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQA 694 >UniRef50_Q2BIX8 Probable ATP-dependent RNA helicase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIX8_9GAMM Length = 410 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 58/389 (14%), Positives = 108/389 (27%), Gaps = 39/389 (10%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 ++ + +E L + + I ++ + + Sbjct: 26 VQQQAIPLALEGADLL-ISSPTGSGKTAAYLIPVIQEL-----SAGKSPTRQPKAIVLVP 79 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 L +L + + E P L +L Sbjct: 80 VRELAEQIASFFDKLAAGLDLNAVAIVGGEDFKKQEKQLAR--ADLVVATPGRLIPHLEN 137 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 D L E L + + A QT+ Sbjct: 138 -----------------RSIELDSLDLLVLDEADRILETGFKEALDQILTLCPEARQTLL 180 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA 444 VSAT + + + + G ++ I + T D L + + Sbjct: 181 VSATLPTSVRKLAERILQEPEWVRVGQKREVEANIEQRIILSDDQTLKDKQLCWLLEN-E 239 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++ +V +K A L ++ H + LH D+ R I R G +LV + Sbjct: 240 SYDKAVVFCNSKTEARRLDGFIRYHKFKAALLHGDVQQKGRFATIEGFRKGTTKILVTTD 299 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 L GLD+ V LV + ++G I IGR R +GKA+ ++ Sbjct: 300 LAARGLDIEGVDLVINTEIPRKG-----DLYIHRIGRTGRGGASGKAVSLISPAEWNLMS 354 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKK 592 +I + R ++ + + K Sbjct: 355 SIERYLKTRFRKSEISGLIANYKGPKKVK 383 >UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AF33_9CRYT Length = 590 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 57/456 (12%), Positives = 121/456 (26%), Gaps = 69/456 (15%) Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD-EEVERLSLFDPLTGQIVST 237 +ID A+ ++++ + + Sbjct: 99 NGVDIPPPIMSFKDMGFPKGLIDALNAKGIMKPTQIQMQGLPVILSGRDMIGIAFTGSGK 158 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN---KLLEEQRLTQ------ 288 FT+ + + ++ E + L L + Sbjct: 159 TIVFTLPMVMYSLESELKLHFMGMEGPDGLILCPSRELALQTTSIIEHFVSFLSKSKINR 218 Query: 289 ------------------------------RTQFDLEMMNELGYCSG-IENYSRFLSGRG 317 + G + +N + Sbjct: 219 PGTLKRNREWEYSEKEKSNSDGNVEDYNRTYYPLLNVICLIGGESAREKQNIIQRQGVHM 278 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 P L D L + + + + + + + + Sbjct: 279 IVATPGRLADMLRKKKVTLYQCRYFCMDEADRLTE-----------------AGFEEAVR 321 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----PIIEVRPVATQVD 433 + QT+ SAT E + +VD +V G +++ Q Sbjct: 322 YIFDNFHERRQTVLFSATMPQKTQEFTRTALVDPIVVNVGRAGATTLNVLQELEYVRQEC 381 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L ++ RVL+ K+ +++ EYL G + +HS + +R + + R Sbjct: 382 RLPHILQSLQKTAPRVLIFCENKKDVDEIHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFR 441 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 LG DVL+G ++ +GLD P + V D + + + IGR R + G + Sbjct: 442 LGLKDVLIGTDVASKGLDFPNIHHVINYDMP-----KEIENYVHRIGRTGRGDSVGVSTT 496 Query: 553 YGDKI-TPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + D ++ + ++ E Sbjct: 497 FIDNSLPETLLCDLKALLIEAKQIIPPFLEKLEATD 532 >UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya RepID=DBP5_YEAST Length = 482 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 67/406 (16%), Positives = 132/406 (32%), Gaps = 25/406 (6%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY--PKTHYVTPRERIVQAME 261 P S + L E ++ + + + P + + + Sbjct: 87 PLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 146 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + R + + L + + + + + L Sbjct: 147 AFSLTMLTRVNPEDAS---PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV------ 197 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLPS-ALDNRPLKF 379 P + + ++V + + + + + L E L L ++ ++ Sbjct: 198 PDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRV 257 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-------RPTGLLDPIIEVRPVATQV 432 + F Q + SAT + + + V + + + Sbjct: 258 KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADK 317 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D+L+E+ I ++ TK+ A L L+ G V LH D+ T ER +I D Sbjct: 318 FDVLTELYGLMTIGSS-IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 376 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAAR-NVNGKA 550 R G VL+ N+L G+D+P VS+V D + + I IGR R G A Sbjct: 377 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 436 Query: 551 ILYG-DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 I + DK + ++ AI + + + + + + KKV+ Sbjct: 437 ISFVHDKNSFNILSAIQKYFG-DIEMTRVPTDDWDEVEKIVKKVLK 481 >UniRef50_A9BL22 Rrp3 n=1 Tax=Cryptophyta RepID=A9BL22_9CRYP Length = 398 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 107/357 (29%), Gaps = 18/357 (5%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + + L + L++ L + ++ + Sbjct: 40 RDIIGYAQTGSGKTIAY---LLPIIQNLVKKKTAFFSIILVPSRELAFQIASYFEAFGN- 95 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR--GDRARKETLVEY 364 + + G + L + +++ I + + + + E Sbjct: 96 -IFGIKIVVLVGGLENFSQKALLSLNPHILICTPGRLIEHLEKFLKNKIKKLEILVIDEA 154 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII- 423 Q+++ SAT ++ + V ++ Sbjct: 155 DRLFQLDFKKEFSIIFSELPKNKQSLFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVK 214 Query: 424 ----EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + ++ D +LV T++ AE T + G YLH Sbjct: 215 TLQQNYIFIPQKLKDCYFIYLCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGG 274 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 ++ +R+EI++ R G+ +L+ +L GLD+P V LV D + + + Sbjct: 275 MNQNKRLEILQKFRFGKIKILIATDLASRGLDIPNVDLVLNYDLPHL-----AKEYLHRV 329 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 GR AR G+ I + + + I +++ + H + + K+ Sbjct: 330 GRTARAGKSGRTINIVTQYDIHLCQKIETLVQQKFILLNFKLAHVLILEQTVDKMKQ 386 >UniRef50_Q0DBS1 Putative DEAD-box ATP-dependent RNA helicase 51 n=2 Tax=Viridiplantae RepID=RH51_ORYSJ Length = 590 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 40/365 (10%), Positives = 94/365 (25%), Gaps = 27/365 (7%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + + + + + + + L + + Sbjct: 100 AIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGT 159 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 + T+ + + + G + + L ++V Sbjct: 160 GVIVLCPTRELAIQTHNVAKELMRYHSQTLGYVIGGIDLRGE-AEQLAKGINVLVATPGR 218 Query: 343 TIPQIGGMYRGDRA--RKETLVEYGFRLPSALDNRPLKFEEFEALA-PQTIYVSATPGNY 399 + + + + E L + + + + QT+ SAT Sbjct: 219 LLDHMQKTKSFKYECLKCLIIDEADRILEQNFEEQMKQIFKLLPRQGRQTVLFSATQTEK 278 Query: 400 ELEKSG-------GDVVDQVVR---------PTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 + + V L V P + L + +++ Sbjct: 279 VEDFAKLTFGSKEERQRTLVYVGVDDHESKATVEGLKQGYCVIPSERRFLVLYAFLKKAL 338 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +V+V + + + L +H + +R E +L+ Sbjct: 339 SEKTKVMVFFSSCNSVKFHAQLLNFIQIECYDIHGQLKQHQRTSTFFKFHKAEHGILLCT 398 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKITPSM 561 N+ GLD+P+V + D + I +GR AR G AIL+ + Sbjct: 399 NVAARGLDIPDVDYIVQYDPP-----DETKDYIHRVGRTARGDNGKGSAILFLLPKELQL 453 Query: 562 AKAIG 566 + Sbjct: 454 LIHLK 458 >UniRef50_Q54Q94 Probable ATP-dependent RNA helicase ddx10 n=4 Tax=cellular organisms RepID=DDX10_DICDI Length = 878 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 118/407 (28%), Gaps = 27/407 (6%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T+ + + + + I L + + + L+ + +++ + L Sbjct: 174 HTLCGRDILGAAKTGSGKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVL 233 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM--YRGDRARK 358 +S L G D + A +++ + + + + Sbjct: 234 KAVGKYHTFSAGL--IIGGRNVQQEKDKINA-MNILIATPGRLLQHMDETYGFDCSNLKI 290 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-- 416 L E L E QT+ SAT + + + + Sbjct: 291 LVLDEADRILDLGFSKCLNSIVENLPRERQTLLFSATQTKSIRDLARLSLQEPEYISVYE 350 Query: 417 -------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 L + V P+ +++ L S I+ +++V + + E + Sbjct: 351 KDITTTPQNLTQTLCVIPLEMKLNMLFSFIKTHLTS--KIIVFFASCKQVRFAHETFKLL 408 Query: 470 GERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 LH + R+E+ D + L ++ GLD P V V +D Sbjct: 409 NPGTTLFPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCP--- 465 Query: 528 FLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 + I +GR ARN G++I + E ++ + + + N E ++ Sbjct: 466 --DDIETYIHRVGRTARNDAPGQSITILLPSEKDGMVNLMEKQKMKFEILEPNPEKLVSI 523 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + ++ K V + + L Sbjct: 524 DSKLSSFLS---EKTDLKYLAQKSFVSYLRSVYRQSNKEIFKIQELN 567 >UniRef50_B7G381 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G381_PHATR Length = 467 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 103/386 (26%), Gaps = 50/386 (12%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + F + + + + Sbjct: 21 KPTPIQAAVIPLAL-AGRDICASAVTGSGKTAAFLLPILERLLHRYSGRTK-------AI 72 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L L Q T ++ + P L D Sbjct: 73 ILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELRSRPDVIVATPGRLLD 132 Query: 328 YLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 ++ + + D + + + + + + + + Sbjct: 133 HITNSAGVTLEDIEILVLDEADRLLDL-----------------GFQDEVHELVKACPVQ 175 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPT------------GLLDPIIEVR----PVAT 430 QT+ SAT + + V L+ A Sbjct: 176 RQTLLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGAN 235 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 + LL+ + + ++ +V TK A L G + LH ++ +R+ + Sbjct: 236 REGMLLALLTR--TFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALE 293 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 + R G+ DVL+ +L GLD+ V V + + + IGR AR G+ Sbjct: 294 EFRKGDVDVLLATDLAARGLDIDRVKTVINFEMP-----SQVATYVHRIGRTARAGRGGR 348 Query: 550 AILYGDKITPSMAKAIGETERRREKQ 575 + + + K + + + K+ Sbjct: 349 SCTLIGEGRRHLMKELIKDAEVKNKR 374 >UniRef50_Q7S2N9 ATP-dependent RNA helicase has-1 n=65 Tax=Eukaryota RepID=HAS1_NEUCR Length = 578 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 49/464 (10%), Positives = 114/464 (24%), Gaps = 66/464 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++ +AE+ + + + +RG P + Sbjct: 116 DKTMKAIAEMGFTKMTEIQRRG-----------IPP---------------LLAGKDVLG 149 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F I + + L + L + Sbjct: 150 AAKTGSGKTLAFLIPAIEML----SSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKN 205 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 ++ G E P L D+L + + + I + Sbjct: 206 HSQTYGVVI-GGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADR 264 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + + + QT+ SAT + + + Sbjct: 265 ILEIGFEDEMRQI----------------IKILPKEDRQTMLFSATQTTKVEDLARISLR 308 Query: 410 D-QVVRPTGLLDPIIEV-------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 + V V LL + ++V+V + + Sbjct: 309 PGPLYVNVDEEKQFSTVEGLDQGYVVVDADKRFLLLFSFLKKMQKKKVIVFFSSCNSVKY 368 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +E L+ +V LH +R + + L+ ++ GLD+P V + Sbjct: 369 YSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQF 428 Query: 522 DADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D R I +GR AR G+++L+ + + + Sbjct: 429 DPP-----DDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLAHL----KAAKVPVVEY 479 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + ++ ++ + ++ G ++ Sbjct: 480 DFPKSKILNVQSQLEKLIGQNYYLNQSAKDGYRSYLHAYASHSL 523 >UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoides RepID=D2BIL8_DEHSV Length = 818 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 72/637 (11%), Positives = 170/637 (26%), Gaps = 91/637 (14%) Query: 77 MKEFFPENAVEYFVSYYDYY-QPEAYVPSSDTFIEKDASVN--------EHIEQMRLSAT 127 ++ P V + +P P + ++ ++ + + Sbjct: 217 VRNLKPNARVVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSL 276 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-----HLTVGMIIDQRAILRRL-AELQY 181 + ++ ++ + +++ I D + L + D + L + Sbjct: 277 RRLM--KNFIDISTP-GISDFLPEDTLKRNRLLPLAEAIRQAHFPDTEELKDTARNRLAF 333 Query: 182 ARNDQAFQRGTFRVR-------GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 Q G + G + + D R+ + + L D Sbjct: 334 D-ELFILQLGVLAKKKRWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTKCLADIKADIS 392 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR----T 290 + P + + + + + A L E Q T Sbjct: 393 KN-------VPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVT 445 Query: 291 QFDLEMMNELGYCSGIEN---------YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 + + G+ + L + + + + +H Sbjct: 446 RLFASIAKVSTLLDGVHTFEGLLDHPLRVALMISDMKSSQKDILKEKIKKGEIDIAIGTH 505 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 I + A + + + L P + ++ATP L Sbjct: 506 ALIQKEIRFKSLGLAVIDEQ--------HRFGVEQRSALKSKGLNPHILIMTATPIPRTL 557 Query: 402 EKSGGDVVDQVVRPTGLLDP--IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 + +D V I Q + + IR++ + + + Sbjct: 558 ALTLYGDLDLSVIDELPPGRQSIKTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEES 617 Query: 460 EDL--------TEYLEEH---GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E + E L +V LH ++ E+ I++ G+ D+LV ++ Sbjct: 618 EAIQAKAATAEYETLSSEVFPEYKVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEV 677 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P +++ + AD+ G + L Q GR R ++ K Sbjct: 678 GIDIPNATVMLVESADRFGLSQ----LHQFRGRVGRGTEQSYCMFLAKNP---------- 723 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 Q+ T G D+ G + + +V Sbjct: 724 ---SLLGQERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGLPDLRMASISDVG---- 776 Query: 629 PKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 L ++ + + + L E + +++ ++ Sbjct: 777 ---LLEQARKEATRLFESDPELNLPENKALEEEIRRV 810 >UniRef50_A2D7F9 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2D7F9_TRIVA Length = 491 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 51/408 (12%), Positives = 119/408 (29%), Gaps = 25/408 (6%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 + L ++ +E L T + + + + Sbjct: 32 LPLHEKTLEVLKRLPFNTMYAIQEQAIPILLSGGDILAAAKTGSGKTLAFLIPAIDLLFR 91 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 K + T+ + + ++ + G+ L + Sbjct: 92 KNATKKDGTIVLIVAPTRELADQIFDVATLLLKDTEV-SFGAAYGGKEKKNETTLLKSGI 150 Query: 334 LLVVDESHVTIPQIGGMYRGDRA--RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 L+V I + + E L ++ E QT Sbjct: 151 NLLVATPGRLCDHILTTKDWSLENLKMLIIDEADRILEDGYKDQLHAIVEGIPSERQTAL 210 Query: 392 VSATPGNYELEKSGGDVV----------DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 SAT + + + L + + ++ L++ +++ Sbjct: 211 FSATQTKDVSKIAEVSFKHTPVYVGVDDNADEVTAANLTQDCMIITPSKRLMLLITILKR 270 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++V+V T+ + +YL++ LH D +R+ + + R + +++ Sbjct: 271 --NDKKKVIVFFNTRAGVKFHHQYLKKMNINTIALHGDQTQQKRLTSLEEFRNKKSGIML 328 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+ V V D +S + I +GR AR GKA++ Sbjct: 329 CTDVAARGLDIEGVHWVIQYDPP-----QSIKEYIHRVGRCARAGKSGKALIILLPNEKK 383 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD---ILALGQNIAK 605 + E + K K+ E + + +++ + + K Sbjct: 384 FVDRLQEN-KVPIKVCKFPENKILDLRKTLAALMEDKNLQKRAKEALK 430 >UniRef50_UPI000196C3AC hypothetical protein CATMIT_02030 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3AC Length = 676 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 56/481 (11%), Positives = 127/481 (26%), Gaps = 63/481 (13%) Query: 144 AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF 203 A++ + + K + L ++ L Y R + + G + +D Sbjct: 191 AVHFPMNHEQLQKGIKTLKYEEFLNFE------LALSYRRMQREQEVGYAKD--FSLDEV 242 Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 A + ++ ++ + L D ++ + + Sbjct: 243 NAFIHTLPFKLTKDQKQSAKEILLDLHNPT-----------IMYRFLQGDVGSGKTIVAA 291 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 A E TQ + + S L + Sbjct: 292 IGLYANYLSGYQGALMAPTEVLATQHYSKLKKTFEAYNMNIALLTGSLTL------KEKK 345 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 +++ L + + +V +H + + + K + + Sbjct: 346 EIYEGLKSGVIDLVIGTHALFQESVHYKNLGFVVTDEQ--------HRFGVKQRKALKQK 397 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT--QVDDLLSEIRQ 441 + +SATP L S +D T + + L +++ Sbjct: 398 GEGVDFLVMSATPIPRTLAMSLYGDMDVSSIETRPEGRKPILTKYFEGSSMKPFLKQLKS 457 Query: 442 RAAINERVLVTTLTKRMAEDL--------TEYLEEH---GERVRYLHSDIDTVERMEIIR 490 + + + V EDL E + + + LH + E+ +++ Sbjct: 458 YLSQDGQCYVICPLIEDNEDLPLKSALTIYEAMSSYFKGHYQTGLLHGSLKDEEKNAVMQ 517 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 D + + +LV ++ G+D+P +++ I +A++ G Q GR R Sbjct: 518 DFKDNKIQILVSTTVVEVGVDVPNANMMVIYNAERFGLSSI----HQLRGRIGRGDQQGY 573 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + AK G D+ G + Sbjct: 574 CFLLSEAQDEPAKERLHYLEE-------------HDDGFEISQYDLKTRGPGELLGDKQS 620 Query: 611 R 611 Sbjct: 621 G 621 >UniRef50_Q09719 ATP-dependent RNA helicase dbp10 n=1 Tax=Schizosaccharomyces pombe RepID=DBP10_SCHPO Length = 848 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 61/498 (12%), Positives = 128/498 (25%), Gaps = 57/498 (11%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNK 279 + + + + V + K L N+ Sbjct: 80 LLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANS- 138 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 L+ + L+ + + S + G F L +VV Sbjct: 139 NTRALILSPNRELALQTVKVVKDFSKGTD--LRSVAIVGGVSLEEQFSLLSGKPDIVVAT 196 Query: 340 SHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + M E + + + QT+ SAT Sbjct: 197 PGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPR 256 Query: 399 YELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAA------- 444 ++ + + D V+ L A + LL ++ Sbjct: 257 TLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNV 316 Query: 445 ----------------------------INERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 + LV TK E ++E L + G V + Sbjct: 317 RPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKI 376 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 + +D R+ I + RLG+ ++LV ++ G+D+P ++ V D + + Sbjct: 377 YGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFP-----PQPKVFV 431 Query: 537 QTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRRE----KQQKYNEEHGITPQGLNK 591 +GR AR G A + R KQ K + + T Q + Sbjct: 432 HRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSDCDFTKQIVLG 491 Query: 592 KV-VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + +++A + + + + + + E + + Sbjct: 492 SLPQELVAELLEWVQRIVSRDVELQQLSNVAARGEKLYFRTRATCSAESAKRAKELVDSK 551 Query: 651 EFEEAAQIRDQLHQLREL 668 + + + + Sbjct: 552 GWSSNNPLFGDVSVIEAE 569 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 65/429 (15%), Positives = 125/429 (29%), Gaps = 35/429 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ D L S P + + I+ A Sbjct: 577 FEGSFPFKETPDQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIRAAFKAVMDDKQV 636 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q + M GY +E SRF + A + + Sbjct: 637 AILVPTTVLAQQHFLNFRDRMA--GYPIVVETVSRFRKP----AEVKKILQSTAAGKVDI 690 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + +G + + +SATP Sbjct: 691 LIGTHRILQKDVSFKDLGLVVIDEEQRFGIKHKEVFKE--------WRSTVDILTMSATP 742 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L + + V T ++ V + D L+ IR+ A +V Sbjct: 743 IPRTLYMALTGARELSVIETAPVERKPIQTIVKSYDDALVSEVIRREIARGGQVFYLHNR 802 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + + LE+ + H +D + ++ D ++ VLV ++ GLD+P Sbjct: 803 VQTINTVAAKLEKMLPEVSIGVGHGQMDEKKLENVMLDFVNQKYQVLVCTTIIESGLDIP 862 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD+ G + L Q GR R K + + R+R Sbjct: 863 NCNTIIIEGADRFGLSQ----LYQLRGRVGRFKRQAYAYLLLHKH----KRLMDVARKRL 914 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 +++ + G G + D+ G + V ++ + L+ Sbjct: 915 AAIRHHNQLG---AGFRLAMRDLELRGAGNLLGSEQSG-------HIVGVGFELYCQLLK 964 Query: 634 QKIHELEGL 642 Q + L+G Sbjct: 965 QSVARLKGD 973 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 8/208 (3%) Query: 39 GVTGSGKTFTIANVIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQ 97 GV + + I + + ++A N LA QL ++ F + + + + Y+ Sbjct: 25 GVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYFP 84 Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDVVVVASVSAIYGLGDP-DLYL 155 E + + R++A ++ +V+V + A+ D Sbjct: 85 EETELSEDEDSPVDRF----ETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVDALT 140 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 L L G ++ +L L Y G F RG +ID++P S D R++ Sbjct: 141 ASQLVLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPI-SADTPYRID 199 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTI 243 F +E++ + DP+T + + I Sbjct: 200 FFGDEIDAIKELDPVTQRSGAPTESIAI 227 >UniRef50_C4JDV3 ATP-dependent RNA helicase DDX18 n=2 Tax=Fungi/Metazoa group RepID=C4JDV3_UNCRE Length = 568 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 51/455 (11%), Positives = 117/455 (25%), Gaps = 55/455 (12%) Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 +N+ + + +++ + + + L + + ++ I R Sbjct: 93 EQNETETAESEQPALPSLNTVSLPQTESEPQKFSELNLSEKTLKAIQDMGFETMTEIQRR 152 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 I P + L + L + G Sbjct: 153 GIPPLM--------------AGTGVIVVSPTRELALQIFGVARELMAHHSQTY-GIVIGG 197 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKET 360 E P L D+L DG + + + I + + + Sbjct: 198 ANQRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDQMR 257 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGL- 418 + QT+ SAT + + + + Sbjct: 258 QIVKILPSE----------------DRQTMLFSATQTTKVEDLARISLRPGPLYINVDHR 301 Query: 419 --------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 L+ + + L S +++ ++++V + + E L Sbjct: 302 KEHSTVEGLEQGYVICDSDKRFLLLFSFLKRNLK--KKIIVFFSSCNCVKYHAELLNYID 359 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V LH +R + + L+ ++ GLD+P V + D Sbjct: 360 LPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPP-----D 414 Query: 531 SERSLIQTIGRAARN--VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 R I +GR AR G+++L+ K + + E Sbjct: 415 DPRDYIHRVGRTARGANGKGRSLLFLQPSEVGFLKHLKDAR----VPVVEFEFPAKKIVN 470 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++ ++ + K+ G ++ Sbjct: 471 VQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSL 505 >UniRef50_A9FX17 DeaD3 protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FX17_SORC5 Length = 632 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 57/398 (14%), Positives = 94/398 (23%), Gaps = 42/398 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY--------VTPRERIVQAME 261 ++ + E+ + + Sbjct: 27 TPVQQAVLAPEL-AGRDLRVSSQTGSGKTVAIGLALAPRLERALADRAAAAAPDGAPRTA 85 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L E L G G E S Sbjct: 86 AAPAAVIIAPTRELAAQIAGELSWLLSPLG-ARVACVTGGTSFGAEARSLRRDPLVIAGT 144 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D+L L + + + M + Sbjct: 145 PGRLLDHLDRGTLDPRGVLALVLDEADQMLDL-----------------GFRDDLEAIVG 187 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDD 434 QT VSAT + D V G + + + A + Sbjct: 188 KMPGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRPGAANGDIAHVAHLVLPAERDAA 247 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +++ + A ER LV T+ A +L + L G R L D++ ER + R Sbjct: 248 VVNLLL--LAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRS 305 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILY 553 G LV ++ G+D+PEV V D GR R G ++L Sbjct: 306 GAITTLVATDVAARGIDVPEVGRVIHADPP-----GDPEIFTHRSGRTGRAGRKGTSVLL 360 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 A + R + + + Sbjct: 361 VAPFAREHALRLLRRARVEATFRPAPSPDDVLRAADER 398 >UniRef50_B9Y4Y9 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4Y9_9FIRM Length = 474 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 51/406 (12%), Positives = 117/406 (28%), Gaps = 38/406 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ +E + + + + Sbjct: 23 YTQPTPVQEQVIPAFLEG-RDCLVQAKTGSGKTAAYALPVCQQCHFED--------RLPQ 73 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + E Q + + + + Y + P + Sbjct: 74 ALILAPTRELADQITQEIQNFSLFRRLTCARL-VGRQPMKSQKYQLKQRVQIVIGTPGRV 132 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 +D++ L + + + + M+ L + E Sbjct: 133 WDHIEQGTLDLSQLKMIVLDEADQMFSLG-----------------LTETVHQILEQLPS 175 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQR 442 QT SAT L+ + V D + + I + + + L+ + Sbjct: 176 PIQTCLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHV 235 Query: 443 AAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + +V + AE++ E L++ G LH ++ +R +++ R G+ +L Sbjct: 236 FSTIQAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRIL 295 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 ++ GLD+ +SL+ D + S I GR R G ++ Sbjct: 296 CATDVAARGLDIDGLSLIVHWDLPL-----NLESFIHRCGRCGRIDQLGTSVALLTPSQK 350 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 S + ET +++ + + + K K Sbjct: 351 SRYSSFLETLETQDEAFELDPFDDHSGLAHWKTKNQRQPEKAAELK 396 >UniRef50_B0WR51 DEAD box ATP-dependent RNA helicase n=1 Tax=Culex quinquefasciatus RepID=B0WR51_CULQU Length = 579 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 91/317 (28%), Gaps = 34/317 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 ++ + + + L++ + + H + I+ Sbjct: 224 YQRPTPIQAQGWPIALSGLNMVGV-AKTGSGKTLGYMLPAIVHI-----NHQKPDPNIRG 277 Query: 266 ELAARRKVLLENNKLLEEQRLTQ-RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L E + +++ + + G G + P Sbjct: 278 PLVLVLAPTRELAQQIQQVATEFGSSSYIRNTCLFGGSSKGPQASDLRRGVEIVIATPGR 337 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D+L + + +++ + + L + + K E Sbjct: 338 LIDFLESGTTTLQRVTYLVLDEADR-----------------MLDMGFEPQIRKILEQVR 380 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQVDDLL 436 Q + SAT + + + V G + ++V + + L Sbjct: 381 PDRQILMWSATWPKEVQRLARDYLGEYVQINVGSLELSANHNITQYVKVIEEHEKNEQLG 440 Query: 437 SEIRQRAAIN--ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 + + ++L+ T TKR + ++ YL G+ +H D ER + R Sbjct: 441 KLLDNLQSRGNPGKILIFTTTKRKCDQISTYLRRFGQDSVGMHGDKSQQERERALNRFRN 500 Query: 495 GEFDVLVGINLLREGLD 511 +LV ++ GL+ Sbjct: 501 SNSCILVATDVAARGLE 517 >UniRef50_Q57UA6 ATP-dependent DEAD/H RNA helicase, putative n=8 Tax=Trypanosomatidae RepID=Q57UA6_9TRYP Length = 948 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 65/492 (13%), Positives = 126/492 (25%), Gaps = 79/492 (16%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++L LAE + + G + + Sbjct: 319 DSVLEALAEGGFQQPFAVQSLG------------------APV--------LMSGRDLLV 352 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + H + E L L + ++L Sbjct: 353 VAKTGSGKTLSYLLPLIRHCMGQ---RACKKGEGPITLVLVPTHELGCQIVRVAEKLCSA 409 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + P L D L G GG Sbjct: 410 AH-LRLVASYGLVPLSDNIKQCRAGCEVMVSTPGRLLDLLTVGG--------------GG 454 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + E S F + Q SAT + + Sbjct: 455 VLSLRFVSFVVVDEADRMFDSGFAEHVEAFLKNIRPDRQLAMFSATMPKELKKVICRHLH 514 Query: 410 DQVVRPTG-------LLDPI------------IEVRPVATQVDDLLSEIRQRAAINER-V 449 D + G ++ +E R + LL + + E + Sbjct: 515 DPIEITVGGKPTPASNVEQRFFFFDEELYDVDVESRSEDKKFLKLLQILGEEGGNGEHLI 574 Query: 450 LVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 L+ T K+ ++L L G R+ L+S +D ++R + G +L+ + Sbjct: 575 LIFTQQKKECDELFARLSACGYNKRIAVLYSGMDPIDREFALEYFSPGNQFILIATGVAE 634 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDK-ITPSMAKAI 565 GLD+P + LV + + IGR R GKA+ + + +A + Sbjct: 635 RGLDIPYLELVINY-----TLPDHYEAYVHRIGRTGRAGRKGKAVSFFTRGKDDELAADL 689 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK---AKGRGKSRPIVEPDN 622 E R E+Q E +++ N + + + + + Sbjct: 690 CEGLERAEQQV---SEELYERATKVRELRKGGTARHNALFHRGYMRAKKQRFTNRDQKEQ 746 Query: 623 VPMDMSPKALQQ 634 + L+ Sbjct: 747 FKTALRAAGLED 758 >UniRef50_Q4N4B1 ATP-dependent RNA helicase, putative n=4 Tax=Eukaryota RepID=Q4N4B1_THEPA Length = 470 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 52/412 (12%), Positives = 114/412 (27%), Gaps = 38/412 (9%) Query: 233 QIVSTIPRFTIYPK---THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + I I + E + LLE + L + Sbjct: 62 KRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIP---ILQKLLEKPQRL-FSLILAP 117 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+ + E G E + G + L ++V + Sbjct: 118 TRELSLQIKEQLISLGSEI-GLDVCLILGGLDMVSQALQLSKKPHIIVGSPGRIADHLQN 176 Query: 350 M--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + L E L + D+ K T SAT + + Sbjct: 177 TKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSATMTSKITKLQKVT 236 Query: 408 VVDQVVRPTGLLDPIIEVRPVAT-----QVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 ++ + E + ++V T ++ + Sbjct: 237 LMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCNTCLTSQKV 296 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE-------------FDVLVGINLLREG 509 T +L+ + LH + ++R+ + + G+ F++LV ++ G Sbjct: 297 TLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPHIISGLFNILVVTDVGSRG 356 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+P V LV D + + I +GR AR G ++ + + Sbjct: 357 LDIPFVDLVINFDVPN-----TSKDYIHRVGRTARAGKSGISLTLITQYDIESFQRTEYA 411 Query: 569 ERRREKQQKYNEEHGITPQGLN----KKVVDILALGQNIAKTKAKGRGKSRP 616 ++ ++ K E + + + ++ + K + Sbjct: 412 LNKKLEEYKDISEEEVYNKYDECCNSLRNAEMDYKNKFQLIKTNKKNKQYNK 463 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 65/519 (12%), Positives = 150/519 (28%), Gaps = 49/519 (9%) Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD-------IALR---VELFDEE 220 ++ +L + ++ + + + G D+ + ++ + ++ F+ E Sbjct: 518 EVIPKLHTIGSSKWKKTKEHTERAILGYASDLLKSYAEREIKEGFAYPIDSADLQSFEGE 577 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV-LLENNK 279 D L + + + ++ A Sbjct: 578 FPFSETEDQLAAISSIKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVL 637 Query: 280 LLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + Q L+ M GI + R + + + + +V Sbjct: 638 VPTTVLAMQHFDNFLDRMANFPINIGILSRFRTQ------KQIQETLEGIANGFIDIVIG 691 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 +H I + + + + + + + +SATP Sbjct: 692 THRIIGEDVKFKDLGLVIIDEE--------QRFGVKAKEHLKKIKIGVDCLTLSATPIPR 743 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRM 458 L S D V T D + + D ++ + + + + + V Sbjct: 744 TLYMSLIGARDMSVINTPPQDRLPTKTIITEPSDQIIQNALLRELSRDGQAFVIHNRVES 803 Query: 459 AEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 ++ ++ + R L H + E + G+ D+LV ++ G+D+P + Sbjct: 804 IYSVSNRIKSLLPQARVLVAHGQMHADEIDATFHAFKSGQADILVATTIVENGVDIPNAN 863 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 + I AD G +L Q GR R + + + E R+R + Sbjct: 864 TILIDRADHFGLA----ALYQLRGRVGRWNRRAYAYFLVPN----LRVMPELTRKRLQAL 915 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 E G+ + D+ G + ++ + K L++ I Sbjct: 916 ---SEASGYGSGMKVAMRDLEIRGAGDILGLEQSG-------HVSSIGFHLYCKMLKRTI 965 Query: 637 HELEGLMMQHAQNLEFEEAAQIR---DQLHQLRELFIAA 672 L+G + + E A R D ++++ Sbjct: 966 QTLQGKLPSIVTETKIELAIDARLPEDYVNEVSLRMEVY 1004 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 17/241 (7%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + E I L++ L+ + + + K A + ++L + Sbjct: 4 IFEKMLKSERILALQKALQHTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEE 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A+L+ ++ F P PS +T ++ + I R K + Sbjct: 64 ARLFHDLSFFT--------------NCPTVDFPSWETLPSENVPPSPDIVGERYQLLKKI 109 Query: 131 -LERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +++ S+ A + L P + K+ L L ++++L + Y R A Sbjct: 110 NSSSEPHIILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIAS 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 +G F VRG +ID+FP S R+E + +++E + ++DP+ V + + I P Sbjct: 170 DKGEFAVRGGIIDVFPV-SSPDPYRLEFWGDDLESIRIYDPIGQISVRAVEQIDIAPGLE 228 Query: 249 Y 249 Sbjct: 229 L 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 14/192 (7%), Positives = 40/192 (20%), Gaps = 24/192 (12%) Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++ I + + + L GL + + + + Sbjct: 390 NLRQKLLSNNIHLPKQTTYQI----GYLSSGLVIQDEEWMI---LPLTELTHRYKI---- 438 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 R ++ + +Y G+ K+ + Sbjct: 439 -----RRQKLRSTYHTSPAETYDLTPGEVIVHLNNGIGRYL--------GIEKRANHLGI 485 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 L + A P + + + + K+H + + + Sbjct: 486 LSEFFTIEYADQAKLYVPFNQAHLITKYLGSNEVIPKLHTIGSSKWKKTKEHTERAILGY 545 Query: 659 RDQLHQLRELFI 670 L + Sbjct: 546 ASDLLKSYAERE 557 >UniRef50_C9LM75 ATP-dependent DNA helicase RecG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM75_9FIRM Length = 697 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 52/414 (12%), Positives = 120/414 (28%), Gaps = 46/414 (11%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 I P V + I E Q + ++ Sbjct: 293 MEGIVPMQRLVQGDVGSGKTAIAILALTKIVENGYQGALMAPTEVLAAQHFKTFQQVFK- 351 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G+ + +LSG + + L + ++ +H I + + Sbjct: 352 -----GMPVKTAYLSGHTKAAERKEILEQLKDGSIHILIGTHALIEENVVFSALGLVITD 406 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + + E + +P + ++ATP + S +D Sbjct: 407 EQ--------HRFGVKQRQALESKGKSPHVLIMTATPIPRTMALSVYGDLDVSFIKGMPP 458 Query: 420 DPIIEVRPVATQ--VDDLLSEIRQRAAINERVLVTTLTKRMAED--------LTEYLEEH 469 V + + +++ + V +E + E L +H Sbjct: 459 GRHPVKTYVVGSHMLQRIFRFMKKEMESGHQAYVVCPLVEQSEKQDLAAAVSVYENLRDH 518 Query: 470 GER---VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 V +H + E+ +++ D R G+F +LV +++ G+++P+ +++ + AD+ Sbjct: 519 VFPQFGVGLVHGRMKNAEKEQVMEDFRKGKFKLLVATSVIEVGVNVPDATVMFVYGADRF 578 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G + L Q GR R + + E Q + Sbjct: 579 GLSQ----LHQLRGRVGRGKEQAYCVLYTDN-------------QNETTQLRMKLMCEIR 621 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP--DNVPMDMSPKALQQKIHE 638 G D+L G + + D ++++ ++ + + Sbjct: 622 DGALLAEKDLLLRGAGEFFGYHQHGMPDLKAADIVRDLPLLELAKHDAKEAVDK 675 >UniRef50_C5KWB5 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KWB5_9ALVE Length = 863 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 57/515 (11%), Positives = 138/515 (26%), Gaps = 72/515 (13%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L D + + + I + V + K Sbjct: 30 LSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQTLKGH- 88 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 L+ + ++ + + L G + FD L ++ + Sbjct: 89 SEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCL--IVGGHSMESQFDRLSSNPDV 146 Query: 336 VVDESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 ++ + + R + E + + + Q + SA Sbjct: 147 LICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLLFSA 206 Query: 395 TPGNYELEKSGGDVV----DQVVRPT-----GLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 T + + S + + + LD ++ L+S +R+ ++ Sbjct: 207 TLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKLQSM 266 Query: 446 N----------------------ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + +V T+ E L + G ++ +D Sbjct: 267 GNANADSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQT 326 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +R + R G+ VL+ ++ G+D+P++ V D S + + GR A Sbjct: 327 QRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFP-----SSSKLFVHRCGRTA 381 Query: 544 RNV-NGKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGLNKKVVD----- 595 R G D + A + R + + + G ++++D Sbjct: 382 RAGAKGXXGPRLDSRSMMSAYHLYYKTRPAASNQSVRRAKLILRAEAGGPQRLLDTPHPA 441 Query: 596 ------------------ILALGQNIAKTKAKGRGK------SRPIVEPDNVPMDMSPKA 631 + + Q + ++ +P + ++P+ Sbjct: 442 FRTAADLGSQSVEDVKEKLDMIAQLRSFRPSQQPKMAGSTTVIKPETMAEISQHVVAPRQ 501 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 L+ + ++ Q E ++L + Sbjct: 502 LRHDLKKMSRAKQQVEHQEGGESDDSEAEELENVE 536 >UniRef50_C1DZ78 Predicted protein (Fragment) n=2 Tax=Micromonas RepID=C1DZ78_9CHLO Length = 338 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 47/351 (13%), Positives = 96/351 (27%), Gaps = 30/351 (8%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ + + I + + + + Sbjct: 1 TPVQRHTVPLAL-AGRDVIASAATGSGKTAAYLIPALAEMLANEKDDTASTPARPRCVVL 59 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + L+ +RL +T + ++ G + P L Sbjct: 60 VPTRELAHQVTLQAKRLCFKTGLKVATLH-GGQSVKPQLEQLAQGPDVVVATPGRLLTCA 118 Query: 330 PADG-LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 + L + + + + + M + + G Q Sbjct: 119 KDEPYLDMSNVRTLVVDEADQMLDMGFEPQVREILIGG--------------CGTPPPRQ 164 Query: 389 TIYVSATPGNYELEKSGGDVVDQ-----VVRPTG-----LLDPIIEVRPV-ATQVDDLLS 437 ++ SAT + V+ + G + + + + +LL Sbjct: 165 SLLFSATFPPNVQALAARLVMSPGLGSGLYGNIGGAAAANITQHLLLADHLRERKMELLV 224 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + R LV K A+ + + LH D R + G Sbjct: 225 AVLRSRPLERRTLVFVAAKADAKWSSAIPDPTLFSADELHGDCSQGARTRALDAFATGAV 284 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 VLV ++ GLD+P+V+ V D + R + + IGR AR G Sbjct: 285 RVLVATDVASRGLDLPDVTHVVNFDLPTD--SRDFDAYVHRIGRTARAGKG 333 >UniRef50_Q0C4R1 ATP-dependent RNA helicase, DEAD/DEAH box family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C4R1_HYPNA Length = 708 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 58/475 (12%), Positives = 113/475 (23%), Gaps = 53/475 (11%) Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 ++ E+E F + + + + L Sbjct: 26 VQAAATAPELEG-RDLLVSARTGSGKTVAFGLAIANELLGGEDTFL-IRAATPLGLIIAP 83 Query: 272 KVLLENNKLLEEQRLTQRTQ-FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 L E + L T + G E + P L D++ Sbjct: 84 TRELALQVARELRWLYANTNAEIATCV--GGMDMRDERRALERGAHIVVGTPGRLVDHIN 141 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 V + + M E +T+ Sbjct: 142 RGSFDTSAIRAVVLDEADEMLDL-----------------GFREELELILEDTPKERRTL 184 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDP------IIEVRPVATQVDDLLSEIRQRAA 444 SAT + + + T + ++ + I + + Sbjct: 185 MFSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIVRHSD 244 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E +V T+ L L G V L + ER + LR G V + + Sbjct: 245 T-ESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCIATD 303 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAK 563 + GLD+P++ LV D R +L+ GR R G + L + Sbjct: 304 VAARGLDLPKLDLVIHADLP-----RDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVE 358 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNK-------------KVVDILALGQNIAKTKAKG 610 + + + + + + + + K D++A + Sbjct: 359 RLLQDAKVEARWGRPPSADEVINRDDTRLLADTALTNPMADKEADLVARLMAEHTPEQIA 418 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGL-----MMQHAQNLEFEEAAQIRD 660 R P D+ + + Q + R+ Sbjct: 419 TAFIRKARAGRTAPEDLRDVDDRPPARKPREERGDRGDWQDRPQRAERAPREPRE 473 >UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y798_COPPD Length = 793 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 65/439 (14%), Positives = 130/439 (29%), Gaps = 48/439 (10%) Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P + + + + A + + E Q + Sbjct: 378 DMQKSKPMNRLLQGDVGSGKTVVAMFAMFVAAKNGKQSAVMVPTEVLAFQHYMVFSQWAE 437 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + G G L G + YL + L +V +H I + Sbjct: 438 QFGLRVG------LLVGSLSASEKSKVKRYLKSGQLDIVVGTHALIQEDTSFKDLGLVII 491 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G +AL ++ P + +SATP L + +D V Sbjct: 492 DEQHRFGVYQRAAL------ISMDKSKQPDVLVMSATPIPRTLVLTYYGDLDVSVIDELP 545 Query: 419 LDPIIEVRPVATQVDD--LLSEIRQRAAINERVLVTTLTKRMAED--------LTEYLEE 468 + ++ + +++ + V +E L E L Sbjct: 546 PNRKPVKTFWVSEKRRSSVYEAVKRELDEGRQAYVVAPLIEESESIEAAAATSLYEELCS 605 Query: 469 ---HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 +V LH ++ E+ ++ + R G VLV ++ G+D+P +++ I AD+ Sbjct: 606 TFLKDYKVGLLHGKMNKEEKKNVMDEFRKGSLQVLVSTTVIEVGVDVPNATVMVIEGADR 665 Query: 526 EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 G + L Q GR R+ + ++ + E Sbjct: 666 FGLSQ----LHQLRGRVVRSSYQAYCYLIANA-------------KTQEAVERLESMVKY 708 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 G D+L G + + + + K L+ + E L+ + Sbjct: 709 SDGFALAEKDLLLRGPGELMGERQHGFSGMRVADL-----IKDMKMLEPARQDAERLVSE 763 Query: 646 HAQNLEFEEAAQIRDQLHQ 664 NLE ++ +R L + Sbjct: 764 -DPNLERPSSSFLRRYLLK 781 >UniRef50_UPI000180C1AE PREDICTED: similar to Ddx10 protein n=1 Tax=Ciona intestinalis RepID=UPI000180C1AE Length = 736 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 62/465 (13%), Positives = 132/465 (28%), Gaps = 41/465 (8%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV-LLENNKLL 281 L ++ + + + + + Sbjct: 62 GLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILECLHKHNWNSLDGP 121 Query: 282 EEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESH 341 ++ + ++ L G N+S L G + +++ Sbjct: 122 GALVISPTRELAFQIFEVLKKVGGKHNFSAGL---LIGGNNVKEEAHSVGKTNIIICTPG 178 Query: 342 VTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + + + + + L E L E QT+ SAT Sbjct: 179 RLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPSERQTLLFSATQTKS 238 Query: 400 ELEKSGGDVVDQVVRPTGL---------LDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + + D L + +++ L S IR + L Sbjct: 239 VKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCELKDKLNVLFSFIRNHQKS--KCL 296 Query: 451 VTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V + + + + + G + +LH ++ + RM + ++ +F VLV ++ Sbjct: 297 VFVSSCKQVQFIFAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKKFAVLVATDIAAR 356 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 GLD PE+ V LD + I GR AR N NG ++L Sbjct: 357 GLDFPEIDWVVQLDCP-----EDADTYIHRAGRTARYNGNGNSLLVLTPTEKEAMLK--- 408 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILA-LGQNIAKTKAKG----------RGKSRP 616 + K+ + + + K KA+ K + Sbjct: 409 --HLQNKKVPILKSEIQSNKLGKIDRKLQSYCAEDKEFKEKAQRCFVAYIRSTFLMKDKS 466 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + VP +L I + + ++L+ +E + + D+ Sbjct: 467 VFDAMKVPFSEFSSSLGLAIPPRVRFLERKMKSLKMKENSAVNDE 511 >UniRef50_C7JD45 DNA/RNA helicase n=8 Tax=Acetobacter pasteurianus RepID=C7JD45_ACEP3 Length = 400 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 45/381 (11%), Positives = 88/381 (23%), Gaps = 39/381 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ ++ + + + + + Sbjct: 24 AAPTPVQQAAIPAILDG-RDVLVRAPTGTGKTAAYALPLSQKLL--------KSRKPRFV 74 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + G + L G Sbjct: 75 LVLVPTRELVLQVEKV----------FRTCL--GESKKGQKQTPVTLVPLFGGSDRAEQE 122 Query: 327 DYLPA--DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 +L +++ + + + L E + Sbjct: 123 HFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLSYL 182 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLL 436 QT+ +SAT + V G + + + Sbjct: 183 PSMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAALFLDPTQKPGFIK 242 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + A R +V TK A+ L L++ LH DI +R + G Sbjct: 243 EFFSR--APKMRSIVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDKRTSTVASFESGR 300 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGD 555 +LV ++ GLD+P V V D + + IGR R G A+ Sbjct: 301 LFILVATDVAARGLDVPSVKQVINYDVP-----DQPETYLHRIGRTGRGGEKGSALTLCT 355 Query: 556 KITPSMAKAIGETERRREKQQ 576 + I + + Sbjct: 356 MDDRQSLRQIEVGAHVKLRII 376 >UniRef50_A5VCX7 DEAD/DEAH box helicase domain protein n=4 Tax=Alphaproteobacteria RepID=A5VCX7_SPHWW Length = 593 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 51/400 (12%), Positives = 99/400 (24%), Gaps = 38/400 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ ++ E + + + E + Sbjct: 19 YTAPTPVQAQVIAAE-AHDRDLLVSAQTGSGKTVAYGLAIAETLLQGAEAL--PRAGEPL 75 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L E Q L + + G +E Sbjct: 76 ALIIAPTRELALQVQRELQWLYAKLG-ARVVSCVGGMNVRVEQRQ--------------- 119 Query: 326 FDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +VV + + R L E L + + Sbjct: 120 ---LSYGCHIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTP 176 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLS 437 +T+ SAT + D + T +D A + +++ Sbjct: 177 PERRTLLFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVN 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +R A +V T+ L+ L E G L ++ ER ++ LR Sbjct: 237 VLRFHEAKG--AMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRA 294 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 V V ++ G+D+P + LV + +L GR R + Sbjct: 295 RVCVATDVAARGIDLPGLELVIHAELPI-----DPETLQHRSGRTGRAGRKGTCVLITPY 349 Query: 558 T-PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 A+ + K I + + + + Sbjct: 350 QRRRHAERLLRGANVNATWDKVPTPDEIYARDQERLLESL 389 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 67/460 (14%), Positives = 131/460 (28%), Gaps = 40/460 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 FD L D L+ I P + + ++ A Sbjct: 637 FDASFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQV 696 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + Q Q E M E R LS + + Sbjct: 697 AVLVPTTVLAEQHYQSFRERMAEFPV------EIRKLSRFCTPAEQRETVKEIRRGKADI 750 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + E + + + + +SATP Sbjct: 751 VIGTHRVASKDVEFNNLGLV---VIDE-----EQRFGVAVKERLKTQHSNVDVLTLSATP 802 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 L + V D T + + +E + L S I + ++ Sbjct: 803 IPRTLHMALVGVRDISNLETPPAERMAVETKVTRWDDKMLRSAIVRELNRGGQMYFVHNR 862 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 +DL ++ R+ H ++ +++ D +FD+L+ ++ GLD+P Sbjct: 863 IGDMDDLAARIKAIVPELRIGIGHGQMEEGALEQVMVDFIDHKFDMLLATTIIESGLDIP 922 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-AILYGDKITPSMAKAIGETERRR 572 + + I D ++ G L Q GR R + L K + +R Sbjct: 923 NANTMFIDDGNRYGLS----DLHQLRGRVGRYKHQAYCYLLVSPN-----KRLTPEASKR 973 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + + + G G + D+ G + V +M + L Sbjct: 974 LRAIEEYSQMG---AGFAISMRDLEIRGAGNLLGSQQSG-------HIAAVGYEMYCQLL 1023 Query: 633 QQKIHELEGLMMQHAQNLEF---EEAAQIRDQLHQLRELF 669 + + + + L + + +++ EA D + LR Sbjct: 1024 EDAVRQAQKLPPKLSADVDIDLPIEAYLPEDYVPNLRHKI 1063 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 98/650 (15%), Positives = 170/650 (26%), Gaps = 158/650 (24%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 GV G + A + +VL P A + G++ F E+ V +S Sbjct: 114 SLAFSGVWGGIRGLLAAALTRHHPH-VLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAG 172 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-----ERRDVVVVASVSAIYGL 148 D +S+ + RL + + + +VV + + A Sbjct: 173 DGTG---------------SSIRDADYAARLQVLQRLRARDQHSPKPLVVTSYIGAAIQR 217 Query: 149 GDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 K L VG I+D I R LAE +A G F RG ++D++ Sbjct: 218 VPSVTSLEKATRELAVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSP-D 276 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +R+E FD+E+E + FD T + T+ Sbjct: 277 QPQPIRIEWFDDEIESIRRFDAATQRSSETLS---------------------------- 308 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 +E + + + + + L T+ D Sbjct: 309 ------KVELAAIGTQPVKSPFAEE------------ENNDEPLDLVVDDTVGAEATIVD 350 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 YLP D +++V + D + + + E ++ Sbjct: 351 YLPEDTVVLVIDPS------------DCHQSSNALLARVAKTERFVSMRELLSELKSHKV 398 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 T A D V T D D A Sbjct: 399 VTGTSLAEGAPS----------DVVDLHTASADSFATSLDETKSKVD-------SVAAGH 441 Query: 448 RVLVTTLTKRMAEDLTEYLEE--------HGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V+V T + LTE LE+ V L RL + ++ Sbjct: 442 EVIVVGDTPADGQRLTELLEDTDAAKQGRLHMTVADLSGG------------FRLTDAEI 489 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV A+ + RA GK I + Sbjct: 490 LVLTG------------------AELFHRSP--------VRRAKTRTRGKPIDSFTQ--- 520 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 Y + I G +++ + I G A Sbjct: 521 --LTPGDLVIHLSHGIGLYRGLNSIEKNGQHQEHLTIEFDGGTKIHVPASR--------- 569 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 V + + K+ ++ G+ + + + D+L +L+ Sbjct: 570 IQLVQRYVGGTKNRPKLAKIGGISWTNQKKAAEAAVTDMADELLELQAKR 619 >UniRef50_A2EQ41 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EQ41_TRIVA Length = 416 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 44/370 (11%), Positives = 96/370 (25%), Gaps = 41/370 (11%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 + ++++ +E+ + + H L Sbjct: 29 PMPIQIKTIPPAIEK-KDICGTAETGSGKTGAYMLPIFHHMWENPHSFF--------ALV 79 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 L + + + + G + + P L Sbjct: 80 FAPTRELATQIDHVTRDIGKDIK-VRVCTIIGGVDEDSQVKALKAQPHVVVATPGRLARL 138 Query: 329 LPADGLL--VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + + + + + + M R + Sbjct: 139 IRNNPKVIPLNKVECLVFDEADNMLRE----------------PSFQTDIQLILSKLNST 182 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDDLLSEIR 440 QT SAT + + + D V ++ + V + + L + Sbjct: 183 HQTYLFSATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVALM 242 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +++ ++ + + A ++ L R H + ER+ I + G++ VL Sbjct: 243 N-QYPDKQTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRVL 301 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITP 559 V N+ GLD+P V LV + I +GRA R +G A+ Sbjct: 302 VATNVGSRGLDVPHVDLVINYELP-----EEHEEYIHRVGRAGRAERSGVAVTIITANEV 356 Query: 560 SMAKAIGETE 569 + Sbjct: 357 VGYIRLENFL 366 >UniRef50_Q4Q8D5 ATP-dependent RNA helicase, putative n=8 Tax=Trypanosomatidae RepID=Q4Q8D5_LEIMA Length = 900 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 58/454 (12%), Positives = 123/454 (27%), Gaps = 47/454 (10%) Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL-ENNKLLEEQRLTQRTQ 291 V + + + R ++ + L+ + Sbjct: 93 TPVQKGTLHLALAGLDVLGAAKTGSGKTLCFVIPVLERLYRERWSSDMGVGALLLSPTRE 152 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRG--PGEPPPTLFDYLPADGLLVVDESHVTIPQI-- 347 L++ + S L G E L ++V + + Sbjct: 153 LALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRL-----HAISIIVGTPGRVLHHLQD 207 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 D + + E L + Q++ SAT + Sbjct: 208 DAELVLDNLQLFCMDEADRLLDMGFREAITSILAYLPPQRQSLLFSATQTTDVQMLAQMS 267 Query: 408 VVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + + T + V + ++D LL +++ N++++V T Sbjct: 268 LKNPRYVSTQAITAAPTPMTLCQNFVVVELHKKLDALLMFLKRH--PNDKIVVFVSTCNQ 325 Query: 459 AEDLT----EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + + L++ L S + R E+ + VL ++ GLD P Sbjct: 326 VKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGLDFPL 385 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRRE 573 V V D S ++ I GR AR G ++L+ M + Sbjct: 386 VHWVVQYDCP-----ESAQTYIHRAGRTARAGARGVSLLFLTPRETPMLSYLHHK-HVPL 439 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 ++ + + Q + +V Q + K V + A+ Sbjct: 440 REIAIKPDFLTSSQEIFVALVV-----QGLKYEAQKAFIAYLRSVYFASNKNVFEVAAVD 494 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + A++L + +L L+ Sbjct: 495 ---------VEAFAKSLGLPVVPDMS-ELQNLQR 518 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 108/655 (16%), Positives = 203/655 (30%), Gaps = 84/655 (12%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L L + GV G + + + L RP + + P+ A QL ++ F Sbjct: 1 MDDLIRSLGQCKEPLDIYGVRGGAVAWLVGRL-GGLARPLLCVCPDDEQARQLATDLALF 59 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 P + P + + RL+A A+ + ++V Sbjct: 60 --------------SDLPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMV 105 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ A+ P+ + + G D + RLA Y R + G + +RG Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 +IDIFP + LR++ F + VE + FDP++ + V + + P + + P Sbjct: 166 IIDIFPPG-QEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPA----- 219 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A + + L+ R Q ++ E + + +G + + L Sbjct: 220 ---ADSPAQQALLERHRQWAASLQWDR--QPSRQLEECLRQHRPFAGDQFFLPLLEPAAL 274 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P YLPA+ L++ + + + ++R A + + D L Sbjct: 275 --SP---LAYLPANTLIIQVDHPRLLQNL-ALHRERIASNYQELTATAQPALPPDELFLS 328 Query: 379 FEEFEALAPQ----TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 E+ Q I+ A + + V+ + R + Sbjct: 329 AEQLHGHFEQAAGARIFPLAPGEANGQRVFQIEAGNHVLLK----QQLDLKRREEGLLAP 384 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L +I+Q ERVL+ T R A + E L HG + I++ Sbjct: 385 LAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGV---------TDGDHCRILKQ--- 432 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 L G D+P + + + G + AA A Sbjct: 433 ----------PLSSGFDLPSEGEHWLSEGELFGDR--------RLESAAAKSRAPATKIV 474 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + RR Y I G+ ++I G + Sbjct: 475 SHDEIN---PGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKL---------Y 522 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 P+ + ++V + + +L + + Q+ L +L Sbjct: 523 IPVDQLNSVGKYKGLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDLLKLYAKR 577 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 57/445 (12%), Positives = 122/445 (27%), Gaps = 51/445 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 D+ +++ E ++ L + P V + + Sbjct: 598 SFPYDETPGQLKAIGEVIDDL----------------CSSKPMDRLVCGDVGYGKTEVAV 641 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 + + Q E + N R Sbjct: 642 RAAFKVVEDGGQVAVLVPTTVLAEQHAATFRERLAGFPVRIDSLNRFRSS------AEQK 695 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L L A + +V +H + R + + + Sbjct: 696 RLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEE--------HRFGVSHKEKIKKL 747 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQR 442 + ++ATP L+ S V D V + +A D ++ I + Sbjct: 748 RSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTFIARHDDLVIKEAIMRE 807 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V + ++ ++ +V H + + EI+ E +VL Sbjct: 808 LGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQLEEIMVRFVRREINVL 867 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P+ + + I AD+ G Q GR R+ Sbjct: 868 VCTTIIESGLDIPDANTIIITRADRLGLAEI----YQLRGRVGRSRQQAYAYLLVP---- 919 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A+ + + + ++ G + D+ G +++ Sbjct: 920 ---ALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIRGGGNILGESQSGN-------I 969 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQ 645 V DM LQ+ + +L+ + + Sbjct: 970 AAVGYDMYLDLLQKTVLDLKRRLRE 994 >UniRef50_A8LRE5 DEAD/DEAH box helicase domain protein n=57 Tax=cellular organisms RepID=A8LRE5_DINSH Length = 730 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 51/394 (12%), Positives = 103/394 (26%), Gaps = 36/394 (9%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +++ + D + + F + + L Sbjct: 21 TPVQIAVSDPALV-EADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFG--PAAAPLGLVI 77 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L E + L G + E + P L D++ Sbjct: 78 APTRELAMQVRRELEWLYGPAG-AQITSCVGGMDARDERRALGRGAHVVVATPGRLRDHI 136 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + V + + L +T Sbjct: 137 ERGNIDLDAVRAVVLDEAD-----------------EMLDLGFREDLEFILGAAPSERRT 179 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQR 442 + SAT + D T + V + + +++ +R Sbjct: 180 LMFSATVPPAIASLAQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYY 239 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 A N +V T+ M LT G +V L ++ ER ++ +R G V V Sbjct: 240 EAAN--AIVFCNTRAMVNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVA 297 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSM 561 ++ G+D+P + LV + S +L+ GR R G + + Sbjct: 298 TDVAARGIDLPNLELVVHAELP-----SSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKK 352 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 A+ + + + + Q + + D Sbjct: 353 AERLLKWAKVTPDWVSPPSAEDVRAQDAARLLED 386 >UniRef50_A5FFZ1 DEAD/DEAH box helicase domain protein n=6 Tax=Bacteroidetes RepID=A5FFZ1_FLAJ1 Length = 444 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 54/453 (11%), Positives = 117/453 (25%), Gaps = 45/453 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + L F + + + Sbjct: 25 EPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPLLQLI--------DTKSSAVQAV 76 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + + ++ G + P L D Sbjct: 77 ILVPTRELGHQIFRNLEDFSKYIPNISIAATCGGIPIKPQIERLKTPTHIIVATPGRLID 136 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + + ++ + + M L + Sbjct: 137 LIQRKAVDLKQTQYLVLDEADEMVSI------------------LKESLDEILTEIPKKH 178 Query: 388 QTIYVSATPGNYELEKSGGDV-VDQVVRP-----TGL--LDPIIEVRPVATQVDDLLSEI 439 +T+ SAT + + + V G +D V ++D L+ + Sbjct: 179 RTLLFSATLPGTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMHFL 238 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ER ++ TK L + L + +H + R I+ R G ++ Sbjct: 239 NS--REGERGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINI 296 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKIT 558 LV +L G+D+ E+S V + + + GR AR NG ++ + Sbjct: 297 LVATDLAARGIDVKEISYVVNYHLP-----DAYETYVHRSGRTARAGANGLSLTVLQEEE 351 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN---IAKTKAKGRGKSR 615 + + I I N K K + Sbjct: 352 VFEIADFERELGLTFSKFQKPSALSIEENNTLLWAKQIFKTKPNHDISTDLKTKVKTVFH 411 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + + + + M+ LQ KI ++ + + + Sbjct: 412 HLTKDELIEKLMANYILQNKIDIVDKTVKKSKK 444 >UniRef50_D2SG81 DEAD/DEAH box helicase domain protein n=2 Tax=Frankineae RepID=D2SG81_9ACTO Length = 508 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 87/340 (25%), Gaps = 11/340 (3%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + AR + T+ + + + Sbjct: 62 LAGRDVLGKAATGSGKTLAFGLPMLARLGETARRGPRAPRALVLVPTRELAQQVFDNLAP 121 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLV 362 G ++ L+ G L V+ I D + Sbjct: 122 LG-QSIGVQLTTVYGGASMYRQIQQLRRGVDAVIATPGRLQDLISQGEVTLDEVSVTVID 180 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-- 420 E F + + Q + SAT + D Sbjct: 181 EADFMSDLGFLPVVQELLDQTRPDAQRLLFSATLDGEVDTLVRRYLKDPARHEVKRAGDD 240 Query: 421 -PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 P E + D + Q AA R L+ T+ A+ L L+ G + +H Sbjct: 241 APPAEHLAYSLAFRDKVPVTEQLAARPGRTLIFVRTQLGADRLAGNLQAAGIKAEAIHGG 300 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + R + + VLV ++ G+ + +VSLV D ++ + Sbjct: 301 LPQGARRRALEEFTDARSPVLVATDVAARGIHVDDVSLVLHYDPP-----ADHKTYLHRS 355 Query: 540 GRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 GR AR G + AK + + + Sbjct: 356 GRTARAGAGGVVVSLLLPDQVGQAKRRFRQAKIEPEVSRV 395 >UniRef50_A2QRY2 ATP-dependent RNA helicase dbp10 n=20 Tax=Leotiomyceta RepID=DBP10_ASPNC Length = 932 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 52/521 (9%), Positives = 123/521 (23%), Gaps = 81/521 (15%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++ ++ + I V + + Sbjct: 100 NLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIQKL-KSHSTQ 158 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 L+ + L+ + + + L G+ F + + +V+ Sbjct: 159 VGARGLILSPSRELALQTLKVVKELGKGTDLKAVLL--VGGDSLEEQFSMMAGNPDIVIA 216 Query: 339 ESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + M R E + + QT+ SAT Sbjct: 217 TPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTRQTLLFSATLP 276 Query: 398 NYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAIN---- 446 +E + + + + L + L+ + + Sbjct: 277 KSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSGDKEGALMYILHNVIKMPTGPT 336 Query: 447 --------------------------------------ERVLVTTLTKRMAEDLTEYLEE 468 ++ TK + L L E Sbjct: 337 EAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHHVDYLYSLLNE 396 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G Y + +D R + + R G ++LV ++ G+D+P ++ V D Sbjct: 397 AGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARGIDIPILANVINYDFP---- 452 Query: 529 LRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEE-----H 582 + + +GR AR G + + RR + + + Sbjct: 453 -SQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRLVLGREHGDQVNFAE 511 Query: 583 GITPQGLNKK-----------VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + G + V+D +KG ++ ++ Sbjct: 512 DVVVGGFPRDGLSQSCEWVNKVLDDTVDIAAQRSVASKGEKLYLRTRNAASL------ES 565 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA 672 ++ + L +E +Q+ + ++ Sbjct: 566 AKRSKEVVSSDNWTALHPLFNDETSQLEAEREKMLARIGGY 606 >UniRef50_Q0AR94 DEAD/DEAH box helicase domain protein n=10 Tax=Proteobacteria RepID=Q0AR94_MARMM Length = 787 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 48/384 (12%), Positives = 100/384 (26%), Gaps = 21/384 (5%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLEN---NKLLEEQRLTQRTQFDLEMMNELGYC 303 + + +A + L + + L++ EL + Sbjct: 38 RDLLVSAQTGSGKTAAFGMAMAKTLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWL 97 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLV 362 G G P L +VV I + + L Sbjct: 98 YGEARGQIASC--VGGMDPRAERKALERGCHIVVGTPGRLRDHIERGALDMSQLKAVVLD 155 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-PTGLLDP 421 E L + + +T+ SAT + + D + Sbjct: 156 EADEMLDFGFREDLEYILDAAPASRRTLLFSATVPRAIADIARRFQKDALRISTVSERGQ 215 Query: 422 IIEV------RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 ++ + + + +++ +R ER ++ T+ L G Sbjct: 216 HADIEYRALSVAPSDRENAIINVLRYY--DAERAIIFCATREAVNRLAARFGNRGFAAVA 273 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L ++ ER ++ LR G V V ++ G+D+P + LV D + L Sbjct: 274 LSGELTQKERTHALQALRDGRARVCVATDVAARGIDLPGLELVIHADLPT-----NSDVL 328 Query: 536 IQTIGRAARNVNGKAILYGDKITPS-MAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + GR R T A + + + + + + + + + Sbjct: 329 LHRSGRTGRAGAKGVCAIIVPHTRRGRANRLLRDAKLQAEWAEAPSSDDVRARDRERLMA 388 Query: 595 DILALGQNIAKTKAKGRGKSRPIV 618 D + K Sbjct: 389 DPILTEAVDEAMKVDTDALLEKFT 412 >UniRef50_Q4P5U4 ATP-dependent RNA helicase DBP4 n=5 Tax=Fungi/Metazoa group RepID=DBP4_USTMA Length = 869 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 60/492 (12%), Positives = 125/492 (25%), Gaps = 38/492 (7%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + ++ L D L + + Sbjct: 47 GIQAFVSPIDLKQFTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGS 106 Query: 258 QAMEEIKEE-LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 L + + L ++ + +++ L +S L Sbjct: 107 GKTLAFLIPVLEILYRRKWGPSDGLGALVISPTRELAIQIFEVLRKIGSYHTFSAGL--V 164 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY--RGDRARKETLVEYGFRLPSALDN 374 G+ D L +++ + + + L E L Sbjct: 165 IGGKDVKQEKDRLSR-INILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSR 223 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL----------DPIIE 424 E QT+ SAT + + + D + Sbjct: 224 TLNAIVENLPRNRQTMLFSATQTKRVKDLARLSLQDPEYVAVREPENEGCTPRGLEQHYM 283 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDT 482 + + ++D L S IR + LV + R + + E + G + LH Sbjct: 284 LVELEKKLDLLFSFIRTH--TKCKALVFMSSCRQVQFVHETFCKLRPGVSLMALHGKQKQ 341 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +R++I + +L ++ GLD P V V LD + I +GR Sbjct: 342 AKRLQIFTQFTKTQHALLFATDIAARGLDFPAVDWVIQLDVP-----EDVDTYIHRVGRT 396 Query: 543 AR-NVNGKAILYGDKITPSMAKAIGET-ERRREKQQKY-----------NEEHGITPQGL 589 AR G ++L+ + + ++ ++ G Sbjct: 397 ARYTAKGNSLLFVLPTQKAFVSYVRSIHLQKNKEIFDVTALALEPFAAALGLPGAPKVKF 456 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 K+ A + + + D+ + + K + + ++ Sbjct: 457 VKEAAKAKKAAAYKAAQQQADDNSGQVKGDSDDEQAERADKNGKVRTKYDRMFERKNQDI 516 Query: 650 LEFEEAAQIRDQ 661 L A I D Sbjct: 517 LSKHYANLIADD 528 >UniRef50_B3RR31 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RR31_TRIAD Length = 497 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 103/367 (28%), Gaps = 36/367 (9%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++++ + + F I ++ + + Sbjct: 155 YISMTPVQMQVIPAAL-SKRNLLVSSPTGSGKTGSFLIPLIHMTFFEKDDEQEQA---PK 210 Query: 266 ELAARRKVLLENNKLLEEQRLTQRT-QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 L L + + + + G + Y + P Sbjct: 211 VLILSPTRELCIQIEDQCKEIMTGRLPNMKTCLIVGGLPLPQQLYRLKQGIQFVIATPGR 270 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L D + + V I ++ M + + + + + Sbjct: 271 LIDIISKHEINFSKVKTVVIDEVDAMMQLG-----------------FEKQVEQIMQVIP 313 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLS 437 QT+ SAT + + + + + G + ++ ++ L + Sbjct: 314 RDHQTLMFSATVTVGVEKMTSVMLSNPIKISVGKPNSLNPSVKHLVLWVEEQSKKKMLFT 373 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-GERVRYLHSDIDTVERMEIIRDLRLGE 496 I + L+ +K A+ L + + R LH D +R+ ++ G+ Sbjct: 374 IINDGKHFHPPTLIFVASKIGADFLADAINAKCRIRAASLHGDKPQQDRINTLKLFLEGK 433 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 +LV + G+D+ V V D + I +GR R + G AI + Sbjct: 434 HPILVTTGVAGRGIDLECVKQVIHFDLPT-----NIHEYIHQVGRTGRLHSLGWAISLIN 488 Query: 556 KITPSMA 562 + + Sbjct: 489 NDSKDIL 495 >UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Chlorobiaceae RepID=A1BEU9_CHLPD Length = 1127 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 54/428 (12%), Positives = 117/428 (27%), Gaps = 35/428 (8%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+ D L +P + + ++ A Sbjct: 545 FEASFVFDETPDQLKAIEEVKKDMQASHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQV 604 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + + + + + + + A + + Sbjct: 605 AILTPTTILAHQHGESFTRRFENFPISIAVLSRFVAR------KDQEKIIEKIKAGQIDI 658 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +H + + + E + ++ +SATP Sbjct: 659 VIGTHRLVSKDVLFKDLGLL---VIDE-----EQHFGVEVKEKLRDSFPGVDSLTMSATP 710 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLT 455 L+ S D + T + + ++ IR + +V Sbjct: 711 IPRTLQFSMLGARDLSIVSTPPKNRQPVETILTGYDPTIIQSAIRHELQRDGQVFFLHNR 770 Query: 456 KRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 E++ + L + R + H + + E +++ D E DVL+ +++ GLD+ Sbjct: 771 ISGLEEVQQTLRDLVPYARIVIAHGQMPSKELEKVMMDFMQKEIDVLISTSIISSGLDIS 830 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I AD G L Q GR R+ + + + +R Sbjct: 831 NANTIIINRADMFGLS----DLYQLRGRVGRSERKASCYMITP----PLNTLKKEAVQRL 882 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + E G G + D+ G + + D+ K L+ Sbjct: 883 AVIESFTELG---SGFTIALRDLDIRGAGNLLGAEQSGF-------IHELGFDLYQKMLE 932 Query: 634 QKIHELEG 641 + + EL+ Sbjct: 933 ETVAELKS 940 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 39/242 (16%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLA------HQTLLGVTGSGKTFTIANVIADLQRPTMV 62 S Q A L++ +E+ ++ + G+ GS + + ++ P +V Sbjct: 42 SMLFRELQQSGAYIHLKKRIEESISSTGALIPVEVTGLKGSLSSVLACTLFSESDCPVLV 101 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 + +T + ++ P V F SD Sbjct: 102 V-SGQTSFEKYENDLGGLLPHAPVHTF---------------SDELPL------------ 133 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 A A++++++ ++++S + P L+ + L V +L LAE + Sbjct: 134 ---ALVALVQKKNPLILSSFDDLLLPLSSPSEALEKLFTLAVEKEAGYEKLLSFLAENGF 190 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 + G F VRG ++D+F + + LR+E F V L FD + T+ Sbjct: 191 EPREFVEDEGEFSVRGSIVDVFSFGAK-VPLRIEFFGNTVSSLRTFDINSQLSQKTLTAA 249 Query: 242 TI 243 + Sbjct: 250 EL 251 >UniRef50_UPI000179E51F Probable ATP-dependent RNA helicase DDX43 (EC 3.6.1.-) (DEAD box protein 43) (DEAD box protein HAGE) (Helical antigen). n=1 Tax=Bos taurus RepID=UPI000179E51F Length = 594 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 43/403 (10%), Positives = 98/403 (24%), Gaps = 75/403 (18%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + + ++ + L + + H + + +A L Sbjct: 263 KPTPIQSQAWPIILQGIDLIGV-AQTGTGKTLSYLMPGFIHIDSQPVKQQRAR-NGPGML 320 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E + + G + P L D Sbjct: 321 VLTPTRELALQVDAECS--EYSYRGLKSVCIYGGGDRDGQIKDLSKGADIIIATPGRLHD 378 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + + +++ + + M L + + +K Sbjct: 379 LQMNNFVYLKSITYLVLDEADKM-----------------LDMGFEPQIMKILLDVRPDR 421 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 QT+ S V ++ A + Sbjct: 422 QTVMTSL----------------PVC-KVEPVEQNS----------------FDFRADHY 448 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V + V LH + + +R ++ + G+ +L+ +L Sbjct: 449 QVTWVSRR---------------ISVESLHGNREQSDRERALKSFKTGKVRILIATDLAS 493 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIG 566 GLD+ +V+ V D R+ + +GR R G +I + +A + Sbjct: 494 RGLDVHDVTHVYNYDFP-----RNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELI 548 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 R + + NK + K Sbjct: 549 NILERANQSVPEDLVSMAERYKANKLKKETENKWGRPQGKPRK 591 >UniRef50_C7QBM5 DEAD/DEAH box helicase domain protein n=16 Tax=Actinomycetales RepID=C7QBM5_CATAD Length = 854 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 93/386 (24%), Gaps = 46/386 (11%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + ++ + + + F + + + +A + Sbjct: 86 HNTFPIQAATIPDALAGRHVLGKAR-TGSGKTLAFGLAALANL-----KGKRARKGKPLA 139 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDL---EMMNELGYCSGIENYSRFLSGRGPGEPPP 323 L L F + G + YS P Sbjct: 140 LVLVPTRELAMQVSD----ALTPYGFAVGADIAAVYGGAPMYKQVYSLRRGVELLVATPG 195 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 L D + + + + + + Sbjct: 196 RLTDLIEQGECDLSEVEIAILDEADQ-----------------MADMGFMPIVTELLSQT 238 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVDDLL 436 Q + SAT E + D V+ D + + A + Sbjct: 239 DPTGQRLLFSATLDGAVDELVRQYMTDPVLHSVTADSEDSAQMDHHLLIVEPADKSMVTA 298 Query: 437 SEIRQRA---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + R ++ TK A+ + E + E G LH + R + + D + Sbjct: 299 EIAARHTPGDDDGRRTILFARTKLGADRIAEKIREAGVSALALHGGMTQRARTKTLADFK 358 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 G VLV ++ G+ + + LV +D + + GR AR +G + Sbjct: 359 EGRVPVLVATDVAARGIHVDGIDLVLHVD-----PAGDPKDYLHRAGRTARAGESGTVVT 413 Query: 553 YGDKITPSMAKAIGETERRREKQQKY 578 + E + + Sbjct: 414 LVLPKQRKSTMRLLEQAGVDAELTRV 439 >UniRef50_C4PXM8 DEAD box ATP-dependent RNA helicase, putative n=3 Tax=Schistosoma RepID=C4PXM8_SCHMA Length = 453 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 57/436 (13%), Positives = 110/436 (25%), Gaps = 54/436 (12%) Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 + + F I + + L L + Sbjct: 35 ILEGNDVVACAKTGSGKTAAFLIPILQSLM--------TELKPLYALIITPTRELAHQIG 86 Query: 281 LEE--QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + L Q ++ G ++ S P L D L Sbjct: 87 EQAAGLNLIQGEPLCNVLVITGGRSIVHQSIDLARSPHIVVSTPGRLADLLRTQTA---- 142 Query: 339 ESHVTIPQIGGMYR----GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + R + L E L + QT+ SA Sbjct: 143 -----AQEADTENKPEWTLSRTKVVVLDEADRLLEDNFGEDLNTILKALPKRRQTLLFSA 197 Query: 395 TPGNYEL---EKSGG----------DVVDQVV---------RPTGLLDPIIEVRPVATQV 432 T E + + L + + Sbjct: 198 TFSGAVKSSLEAAKSVAYAENRRPPILWQPECMTTCSSAGAVTVETLSQYYILMRPEHKE 257 Query: 433 DDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 L+ + Q + +++ T + + + G + LHS + R+ + Sbjct: 258 AFLVHTVDQFLTENPHSLIMIFTNKCKWCHLIGLMMTSLGIKTTLLHSSMTQKNRISSLT 317 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R + VL+ +L GLD P V +V + + + +GR AR G Sbjct: 318 LFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPI-----RPKDYVHRVGRTARAGKAGL 372 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEH-GITPQGLNKKVVDILALGQNIAKTKA 608 A+ D KAI + K NE+ ++ D I + Sbjct: 373 ALTLCDLFEVKRLKAIQTFINKELKTFDVNEKKVAQIIAEVSIARRDAERKLDEIRFDEK 432 Query: 609 KGRGKSRPIVEPDNVP 624 + K++ +++ + Sbjct: 433 REINKAKNLMKARSSK 448 >UniRef50_A9BKH3 Eif4A n=1 Tax=Cryptophyta RepID=A9BKH3_9CRYP Length = 401 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 55/407 (13%), Positives = 120/407 (29%), Gaps = 41/407 (10%) Query: 184 NDQAFQRGTFRVRG---EVIDIFPAESDDIALRVELFDEE-VERLSLFDPLTGQIVSTIP 239 + G F G E++ + ++ + Sbjct: 15 EFFPEKIGEFSDMGLKKEILQGIFKYGFEKPSLIQQKGILPIIHKKDLIAQAQSGTGKTA 74 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 F I + + + L N + + + + T+ + Sbjct: 75 TFVIGTLQNVQYD--------VFQVQCMVVCPSRELANQIKIVYESIGKFTKIRTQECIG 126 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 P LFD L + LL ++ I + M+ Sbjct: 127 GTKIKDDRQLLFSKKPHIIIGTPGRLFDILSIEKLLSQKLEYLVIDEADEMF-------- 178 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + + ++ + SAT L+ + D V Sbjct: 179 ---------SRGFKVQIFRIFKYLPKECKIGLFSATLPKEILQVIELFISDPVRILVKKE 229 Query: 420 DPIIE----VRPVATQVDDLLSEIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERV 473 + +E + + L + E+ ++ ++ E L ++ + + Sbjct: 230 ELTLEGIKQFYIPIEKEEWKLEALFDIYRSIKAEQSIIYVNARKKVEWLANKMKLNDFSI 289 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 ++H +++ ER E +++ R G+F VL+ +LL G+D+ +V+ V D + + Sbjct: 290 AFIHGEMEQSERSETMKNFRFGKFRVLITTDLLSRGIDIEKVNFVINYDLPQY-----KE 344 Query: 534 SLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 S I IGR+ R G AI + ++ + I + Sbjct: 345 SYIHRIGRSGRFGKKGVAINFLSRVDVDNLREIEAYYSTVIALIPED 391 >UniRef50_C6XFC1 ATP-dependent RNA helicase protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFC1_LIBAP Length = 573 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 46/361 (12%), Positives = 102/361 (28%), Gaps = 21/361 (5%) Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLL---ENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + LA+ + + +++ EL + Sbjct: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM-YRGDRARKETLV 362 ++ G L +VV I G + L Sbjct: 98 YAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 E L + + + + SAT + D V + Sbjct: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215 Query: 423 -------IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + ++ + + +++ +R A N +V T+ T+ L EH +V Sbjct: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVA 273 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L ++ ER ++ +R G V + ++ G+D+P++ LV + + +L Sbjct: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE-----LSSNPENL 328 Query: 536 IQTIGRAARNVNGKAILYGDKITP-SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + GR R ++ A+ + + I + + + Sbjct: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388 Query: 595 D 595 D Sbjct: 389 D 389 >UniRef50_B5DQ82 GA23405 n=4 Tax=Drosophila RepID=B5DQ82_DROPS Length = 597 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 65/450 (14%), Positives = 124/450 (27%), Gaps = 49/450 (10%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++++ ++ F + Sbjct: 143 FSQPTPIQMQALPVLFQK-RALMACAPTGSGKTLAFLTPIIN-------GLRSHKTTGLR 194 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L L E LT+ T + ++E G E ++ P Sbjct: 195 ALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKHGAECKQKY---DILISTP 251 Query: 323 PTLFDYLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 + L L + + + + + + Sbjct: 252 NRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEG--------------QNNFKEQLDDIY 297 Query: 381 EFE-ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVDDL 435 + SAT + + + + V G D + + Sbjct: 298 AACSHPQKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGK 357 Query: 436 LSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L +R + VLV +K A+ L E L G V +H++ +R +R R Sbjct: 358 LVAMRNLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFR 417 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G VL+ L+ G+D V+LV D + S I IGR R G+AI Sbjct: 418 EGNIWVLICTELMGRGIDFKGVNLVINYDFP-----PTTISYIHRIGRTGRAGRPGRAIT 472 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + + + ++I + E+ + + + K I A + Sbjct: 473 FFTQDDTANLRSIALIIKNSGGTVP---EYMLQMKKVRKSEARIRAKKP---LEREDIST 526 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 K RP + + +Q+ + L+ Sbjct: 527 KIRPEASIEATQKSAKLQKIQKAENILKKR 556 >UniRef50_Q9N478 Putative uncharacterized protein n=2 Tax=Caenorhabditis RepID=Q9N478_CAEEL Length = 732 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 69/447 (15%), Positives = 128/447 (28%), Gaps = 31/447 (6%) Query: 207 SDDIALRVELFD---EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 S LR E F +E L D + + V + + Sbjct: 71 SSRTFLRFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLAL 130 Query: 264 KEE-LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 L A + + L ++ + L+ + + +S L G Sbjct: 131 VIPVLEALWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAF 190 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRG--DRARKETLVEYGFRLPSALDNRPLKFE 380 + ++V + + + D + L E L + Sbjct: 191 ERNR---ISGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSII 247 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT---------GLLDPIIEVRPVATQ 431 QT+ SAT + D V L + + Sbjct: 248 NNLPAERQTLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHK 307 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEII 489 ++ L S I A ++ LV + + A LTE + G V L ++ +R+E Sbjct: 308 INALWSFI--EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETF 365 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG 548 + VL+ ++ GLD + V +D I +GR+AR +G Sbjct: 366 TKFDESKAAVLIATDVASRGLDFEHIDWVIQVDCP-----AQIDDYIHRVGRSARMDDSG 420 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++L IG+ E+ + + H + K+ ILA Q + + Sbjct: 421 NSLLMVSPSQEEAM--IGKLEKHSIP-IEELKIHPDAMSDVRVKLRAILAESQELKEYAQ 477 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQK 635 K + +A+ Sbjct: 478 KSIVAYLRSIYTMKDKKVFDVEAIDAA 504 >UniRef50_A6VX62 DEAD/DEAH box helicase domain protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VX62_MARMS Length = 452 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 38/374 (10%), Positives = 90/374 (24%), Gaps = 21/374 (5%) Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE----LAA 269 + L D ++ ++ + + + Sbjct: 76 LNLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMISDFLD 135 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 N + + +++ +E + + + G L Sbjct: 136 YPLEEKRANNFARGLIIAPTRELAIQIADEAVKLTSNCH--LNVVTLVGGLSYEKQKIAL 193 Query: 330 PA-DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA- 386 + ++V + + + L E L Sbjct: 194 ETENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMGFIPDVKSIIRMTPHKE 253 Query: 387 -PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL---DPIIEVRPVATQVDDLLSEIRQR 442 QT+ SAT + + I+ + D ++Q Sbjct: 254 TRQTMLFSATFPKDIQALAQQWTYFPKEVSVVPKEATNQNIDQVIYTVEADQKWPVLQQL 313 Query: 443 AAI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 +R ++ + DL E L + L ++ +R++ + + + G VL Sbjct: 314 IEKNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTLANFKEGIIQVL 373 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI-GRAARNVNGKAILYGDKITP 559 V ++ G+ + V LV + I GK++ + + Sbjct: 374 VATDVAGRGIHVDNVELVVNYSLP-----EDPEDYVHRIGRTGRGGETGKSVSFASEDDA 428 Query: 560 SMAKAIGETERRRE 573 M I Sbjct: 429 FMIPEIERVVGESI 442 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 68/443 (15%), Positives = 131/443 (29%), Gaps = 36/443 (8%) Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 D + + F++E D L T P V + ++ Sbjct: 531 DTPWQSQ-FEDEFPFRETPDQLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFK 589 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 A + Q Q E + + R + + Sbjct: 590 AIMDGKQVAILVPTTVLAEQHFQTFTERFAAYPAVIEVLSRFRSN------SEQKRIVED 643 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + + E + + Sbjct: 644 LQKGVVDIVIATHRLLSRDVKFKDLGLL---VIDEEHR-----FGVAQKEKIKALKELVD 695 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINE 447 I +SATP L + + D V T + V + ++ + + Sbjct: 696 VISLSATPIPRSLHMALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQG 755 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + E L+E G ++ H + E ++ D G++ + + + Sbjct: 756 QVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTI 815 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLDMP V+ + + +ADK G + L Q GR R+ A Y I Sbjct: 816 IESGLDMPNVNTIIVDEADKMGLAQ----LYQLRGRVGRSHR-LAYAYLTYRPDW---VI 867 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E ++R + E G G+ + D+ G + V Sbjct: 868 SEASQKRLNAIREFNELG---SGMKIALRDLEIRGAGNILGAEQHGY-------IQAVGF 917 Query: 626 DMSPKALQQKIHELEGLMMQHAQ 648 D+ + L+Q+ L+G +Q + Sbjct: 918 DLYCRLLEQETGRLKGEQVQENR 940 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 21/239 (8%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + L L+ + L G++GS K F ++ ++ R + L P + A L Sbjct: 2 LLQEKFWDSLCGVLQKRQ-NILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLA 60 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE-- 132 +++ F + F++ Y+ E +E R+ + + L+ Sbjct: 61 RDLEAFIEPGRLFMFLARDFYFAKENL---------------STLEVGRILSLQHCLDHP 105 Query: 133 RRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 R+ +++A+ + P + L L G +QR IL++L Y R D ++G Sbjct: 106 RQSAIIIATPGSFIYPLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQG 165 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT-IYPKTHY 249 F VRG +IDIFP + RVE F E +E + FD + + + I P Sbjct: 166 EFAVRGGIIDIFPLGHKE-PCRVEFFGELIESIHRFDINSQRRLGKDEGQVKILPADEL 223 Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 28/290 (9%), Positives = 79/290 (27%), Gaps = 54/290 (18%) Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 + + ++ A + + + + E+ P Q + L + I Sbjct: 287 KKEIEAHSVIYHAYFPSTIPQVAVTSLQHISQ---------KEMEPFYRQYETLFARIND 337 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V++ ++ E + + L E G + Sbjct: 338 WQGKGLKVILAIKSRVAREQIQQDLLEQGITGISY------------LDK---------- 375 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ +G + + + ++D G S R G+ + Sbjct: 376 ---IVEKGFSSSTLQVALLSESDIWGKKTDPGS------RKKHKHKGEERILL-----ED 421 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 K + + G+ ++ + + G + P+ + D Sbjct: 422 LKLGDYVVHESYGIGIFRGVSQVENSGITREYILLEYAGTDRL---------YLPLEKLD 472 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + S + ++++L G + + + + + L QL + Sbjct: 473 LLFKYTSSGDKEPRLNKLGGSAWERTRKKVAQSIQDLAEDLLQLYAHRES 522 >UniRef50_Q9Y2R4 Probable ATP-dependent RNA helicase DDX52 n=33 Tax=Euteleostomi RepID=DDX52_HUMAN Length = 599 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 52/381 (13%), Positives = 110/381 (28%), Gaps = 37/381 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++++ + F+I P + L Sbjct: 187 MPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQPANKG-------FRAL 238 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + E ++++ T F + M+++ + P L Sbjct: 239 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 298 Query: 328 YLPADG--LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-EEFEA 384 L D + + + + + ++ + ++ + Sbjct: 299 LLKQDPPGIDLASVEWLVVDESDKLFEDGKT--------------GFRDQLASIFLACTS 344 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA----TQVDDLLSEIR 440 + SAT + ++ + + G + +E L +R Sbjct: 345 HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAVR 404 Query: 441 QRAAINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + VLV + A++L L G V +H++ +R + R G+ Sbjct: 405 ELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIW 464 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 VL+ LL G+D V+LV D S I IGR R GKAI + + Sbjct: 465 VLICTALLARGIDFKGVNLVINYDFPT-----SSVEYIHRIGRTGRAGNKGKAITFFTED 519 Query: 558 TPSMAKAIGETERRREKQQKY 578 + +++ ++ Sbjct: 520 DKPLLRSVANVIQQAGCPVPE 540 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 88/666 (13%), Positives = 204/666 (30%), Gaps = 94/666 (14%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 A++ + + L ++ S + +A+ + +++ N Sbjct: 2 DILLKELYNNVAVKSILKKESK------LGNLSLSEEALIVASAFQKQPQTMLIVKNNTY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY + E + ++ + + + + ++ Sbjct: 56 TAQRLYERLYSLLGEK--------------VLFFGVEESLRVEAIAASPETKANQMEVLS 101 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +VV + +A P+++ + + + + + L E Y + Sbjct: 102 KLFDNKPYIVVMNAAASIHYLPAPEVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q + RG +ID++ + LR+E FD E++ + FD T + + I +I P + Sbjct: 162 DQPLCYAARGGIIDVYSMNYE-YPLRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + E I + ELA + + + LE DL+ + + + Sbjct: 221 DILFTNEEIQTITQLALAELANVKGFTNASKEHLEAIV-----NEDLDAIANHSPEARLY 275 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL-VEYGF 366 Y FL+ T+ DY+ ++V E I + A + + E Sbjct: 276 KYRAFLN------QQATIMDYVKNACVIVSSEEE-VKDSIKHAAEENIAYIQEMYQEANG 328 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQVVRPTGLLDPIIE 424 L ++ K + + ++V + + + GD+ L+ ++ Sbjct: 329 LLKFSMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDI---------NLERTMD 379 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + D +L + + + + E L+E + Sbjct: 380 QLITQSHSDKVLLCLDE---------------SEIKRVRELLDEKNVS----------YQ 414 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R+E L+ G +L + L EG + + S + + Sbjct: 415 RVEETDTLKNG-ISIL--HHRLIEGFTCISEQIHVYTGKELFQSKHSISRY------SNK 465 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + KY G++K + I G ++ Sbjct: 466 FKEAEV-----LHDYQELNVGDYVVHHQHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVL 520 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + R +S + K+++L + + E+ AQ+ +L Sbjct: 521 LVPLEQFQLIRKF---------VSKEGAVPKLNKLGSGEWEKTKRKVSEKIAQLAQRLVH 571 Query: 665 LRELFI 670 L Sbjct: 572 LYASRE 577 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 57/443 (12%), Positives = 122/443 (27%), Gaps = 35/443 (7%) Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F+++ + D + P + + + A Sbjct: 594 FEQDFDYELTHDQARAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQV 653 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 Q + ++ P + + + A + + Sbjct: 654 AFLCPTTILSLQHYKTFTRRFENYPV------RIEVINRFIPMAKQKQIMEDIKAGSIDI 707 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + +H + + + E + + + +SATP Sbjct: 708 LIGTHRLLSKDIQFQDLGLL---VIDE-----EQRFGVEHKEKIKEFKNTVDVLSLSATP 759 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLT 455 L+ S + T + + V + ++ I++ A N +V Sbjct: 760 IPRTLQMSLIGIRSLSQLNTPPQNRMPVQTYVIEKNFAMIKEIIQRELARNGQVFYLYNN 819 Query: 456 KRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 + ++ L E + H + + +++ + VLV ++ G+D+P Sbjct: 820 VKEIYNVARKLREALPDVEIGVAHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIP 879 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRRE 573 + + I +AD G + L Q GR R+ A Y I Sbjct: 880 NANTILIDEADHFGLAQ----LYQIKGRVGRSDR-LAYAYLMYSPQRQLSEI------AM 928 Query: 574 KQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 K+ K +E G + D+ G + D V +DM + L Sbjct: 929 KRLKSIKEFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGF-------IDTVGIDMYIEMLN 981 Query: 634 QKIHELEGLMMQHAQNLEFEEAA 656 I E +G+ + + L Sbjct: 982 DAIMEEKGIKKEVKKELAKANVK 1004 >UniRef50_Q12Q06 DEAD/DEAH box helicase-like protein n=14 Tax=Gammaproteobacteria RepID=Q12Q06_SHEDO Length = 465 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 49/371 (13%), Positives = 99/371 (26%), Gaps = 44/371 (11%) Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + L F + + + ++ L L ++ Sbjct: 65 KGKDVLALAQTGSGKTLAFGLVILEKLLLQAKEKS-VAQDKPSALVIVPTRELA-QQVHH 122 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 E + G + + + P L + + + D H+ Sbjct: 123 ELNTVAMKLNLTSAIVCGGADLDKQIDALAQGPQLLIATPGRLLALVQEKAVSLSDIKHL 182 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 + + + K F Q + SAT E Sbjct: 183 VLDEADRLLE-----------------MGFWPDIQKIIAFIPANCQKLLFSATLPVPLRE 225 Query: 403 KSGGDVVDQVVRP-------TGLLDPIIEVRPVATQVDDLLSEIRQ------------RA 443 + + ++ + ++ L++ ++ Sbjct: 226 LADSLLYKPQRIEAKAASTQVAEIEERAYLVNKGSKAQALIALLKDAPLKQAGNKQTGIK 285 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + LV K A+ L + L + G + LH D + R + + + + G VLV Sbjct: 286 QPSLQTLVFINGKDDADSLAKKLNKAGLNAKALHGDKEQNIREQTLAEFKQGTVTVLVAT 345 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMA 562 +LL G+ + E+ V S + + IGR R G AI Sbjct: 346 DLLARGIHLSELPQVIN-----FALPESGATYVHRIGRTGRAGAKGLAISLVCHGESQYL 400 Query: 563 KAIGETERRRE 573 +AI +R Sbjct: 401 EAIEAFTQRPL 411 >UniRef50_A2G6R5 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2G6R5_TRIVA Length = 865 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 115/386 (29%), Gaps = 46/386 (11%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 ++ ++ V + + I T+ + ++ Sbjct: 507 TEPTPIQKIAIP-IVMSGMNLVGIAQTGSGKTAAYLIPAITYVINQNKKRG------PHV 559 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + LT+ T + G + + P L Sbjct: 560 LIMANTRELVKQIQEFGEILTKNTS-VKVAVAYGGENNRRQQIRDIAGADIIAAAPGRLL 618 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D++ + + V I + M D + + Sbjct: 619 DFIRNNNIKPESIGIVVIDEADKMVSND-----------------FEPQCKAVISRCPKN 661 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA---TQVDDLLSEIRQRA 443 QT+ SAT + + + + + + I + + D L ++ + Sbjct: 662 IQTLMFSATWPDEVQFMAQNYLGEYIRVIVNSRELTININIKQMVIEKDRDSLRQLGEIV 721 Query: 444 ---------AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++++ TKR E+ +YL H +V Y H D++ ++R + + + Sbjct: 722 EGIKRSKGNESYPKIIIFCKTKRTVEEAHDYLAPH-IKVVYTHGDVNQIDREKALNAFKH 780 Query: 495 GEFDV-LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 + + +V +L G+D+ +++ V LD S IGR R G AI Sbjct: 781 ANYPIAMVCTAVLSRGIDVNDITHVVNLDMP-----DSITEYAHRIGRTGRMDRTGVAIS 835 Query: 553 YGDKITPSMAK-AIGETERRREKQQK 577 D+ + + + + + Sbjct: 836 LFDRRKDDRLRYELRKYMEQAGQDIP 861 >UniRef50_C0QQE8 ATP-dependent DNA helicase RecG n=2 Tax=Hydrogenothermaceae RepID=C0QQE8_PERMH Length = 802 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 70/447 (15%), Positives = 132/447 (29%), Gaps = 36/447 (8%) Query: 215 ELFDEEVERLSLFDP-LTGQIVSTIPRFTI---YPKTHYVTPRERIVQAMEEIKEELAAR 270 E F +E E F+ + I P V + + +A Sbjct: 348 EGFIDEFESKLPFELTEDQRKAIKEILSDISKTVPMNRLVQGDVGSGKTVVAAASVIAVA 407 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 E Q + +++ G L+G P + ++ + Sbjct: 408 LDNKQTAVMAPTEILAAQHYRTFKDILKNFGITPY------LLTGSIPQKDKKKIYRLIQ 461 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + VV +H I + +G + E P T+ Sbjct: 462 SGEAKVVIGTHALIQDELKFKNLSLVVVDEQHRFGVI-------QRKALIEKSHKVPHTL 514 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--EVRPVATQVDDLLSEIRQRAAINER 448 ++ATP ++ + +D V + L ++ Q + Sbjct: 515 IMTATPIPRTMQIASFGDLDISTIKQLPKGRKPVETVLIYDDEKKILYRKVSQEIEKGRQ 574 Query: 449 VLVTTLTKRMAEDLTEYLEEHGE----------RVRYLHSDIDTVERMEIIRDLRLGEFD 498 V V +E + E G ++ LH + E+ I+ R GE D Sbjct: 575 VFVVYPLIEESEKIDLKSAEEGYEQWKKAFPDKKILLLHGKMPQEEKDRIMESFRKGEAD 634 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 +LV ++ G+D+P S++ I +A + G + Q GR R Sbjct: 635 ILVSTTVIEVGVDIPNASVMVIEEAHRFGLSQI----HQLRGRIGRGQYEGYCYLVLPSR 690 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + E+RR + + + T G D+ G A+ + Sbjct: 691 FKRKLENRDEEKRRVQTVERLKILVKTNDGFRIAEEDLKIRGGGDIAGTAQSGRLNI--- 747 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQ 645 ++ D+ K LQ E + L+ + Sbjct: 748 GIADLSRDLDRKILQIAKDEAQKLIEK 774 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 79/511 (15%), Positives = 149/511 (29%), Gaps = 55/511 (10%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 + +L E+ YA+ + F + + E F++ Sbjct: 508 SIDDLADKLVEI-YAQREITEG---FAFLPD-----------QPWQQE-FEDAFPYEETE 551 Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D L P + + ++ A + Sbjct: 552 DQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQ 611 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q Q L G + N R + + + ++ +H + + Sbjct: 612 QHFQTFLNRFAPFGVKVDVLNRFRTT------SEKKQILKGVEDGSIDILIGTHSLLNKK 665 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + E + + A + +SATP L S Sbjct: 666 VVFKDLG---MLVVDE-----EQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVG 717 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 V + V T + + V +L+ I++ A +V + E L Sbjct: 718 VREMSVINTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELL 777 Query: 467 EEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 E G R H + + EI+ D G +DVL+ +++ GLD+P + + I DAD Sbjct: 778 ESALPGLRYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDAD 837 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + G + L Q GR R+ + + K + E +R K + E G Sbjct: 838 RLGLSQ----LYQMRGRVGRSRRRAYAYFMYRPD----KILSEAAEKRLKAIEEFTELG- 888 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 G + D+ G + +V M L++ I + + + Sbjct: 889 --AGFKLAMRDLEIRGAGNLLGSQQHGN-------IASVGFGMYVSMLEEAIAKAQNKEV 939 Query: 645 QH----AQNLEFEEAAQIRDQLHQLRELFIA 671 + ++ E A I D + I+ Sbjct: 940 ERDVSIDPAIDLEVDAFIDDAYIKDSARKIS 970 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 17/241 (7%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAP 65 +++ Q + + + G++GS K+F ++ + L +P +++ Sbjct: 1 MDNTLTKLLSQNPSFVDGLNAFQRKGKSV-IYGLSGSQKSFLLSQSFSAGLTKPVVIVVH 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 +K ++ F P P P++D + + ++ ++ Sbjct: 60 DKDHKEMWERDLAFFMPNA-------------PVLSFPTTDHVDFTTVARSLEVQGAQMR 106 Query: 126 ATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A + + VV+A+ + P LH + I++ L +L + Y R Sbjct: 107 ALALLAWQEPAVVIANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 DQ QRG F VRG+++DI+P SD +R+E F +E++ L F + + I +T+ Sbjct: 167 DQVEQRGHFAVRGDILDIYPVNSD-HPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVT 225 Query: 245 P 245 P Sbjct: 226 P 226 Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 105/349 (30%), Gaps = 63/349 (18%) Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 TL Y+ L+ DE + + D ++ + + Sbjct: 237 TLLSYVKEGTLI-YDEPGRIQEALKKFLKEDPTHRKNHC------------DWNELQRTV 283 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 Q + + +G + + + Q+ L EI+Q Sbjct: 284 DARNQVAFTFMQ--QRSIGLTGF---NPIGI------QGKTMTSFERQIPLLTDEIKQWH 332 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 ++ +V++ ++ E + LE GE + + HSD V++ Sbjct: 333 RLHHQVVIVLNNQQRREGIERALE--GEHIVFTHSD-----------TWIAKPNTVIILN 379 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKAILYGDKITPSM 561 LL +G ++P LV +++ + G + R RN G+ I Y Sbjct: 380 GLLTDGFELPNSHLVVVVEGNIYGQQK----------RKLRNKPKKGQEINYFT-----D 424 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 KY I +G+++ ++I G + A D Sbjct: 425 LTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANN---------LD 475 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 + + + +IH++ G + + D+L ++ Sbjct: 476 QLQKYIGNEGDVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQRE 524 >UniRef50_Q9FLB0 DEAD-box ATP-dependent RNA helicase 18 n=16 Tax=Viridiplantae RepID=RH18_ARATH Length = 593 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 46/446 (10%), Positives = 105/446 (23%), Gaps = 40/446 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 L + +E L+ D V + L + Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82 Query: 276 E---NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + ++ + ++ N + G E + Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142 Query: 333 GLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +++ + M L E L + +T Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG 202 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT------GLLDPI------------IEVRPVATQV 432 SAT E + + + V + + Sbjct: 203 LFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKS 262 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE----HGERVRYLHSDIDTVERMEI 488 L+ + +++++V +T + L + + +H D+ R + Sbjct: 263 SQLVDLL--IKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKA 320 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 + L+ ++ GLD+P + V D + GR AR Sbjct: 321 LASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPP-----QDPNMFNHRAGRTARLGRQ 375 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G+AI++ + E R R + + + + + + + Sbjct: 376 GRAIVFLLPKEEAYV----EFMRIRRVPLEERKCSEDASDVIPI-IRSAAMKDRAVMEKG 430 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQ 633 K + + K L+ Sbjct: 431 LKAFVSFVRAYKEHHCSFIFRWKDLE 456 >UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillonella RepID=D1BMY0_VEIPT Length = 680 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 55/447 (12%), Positives = 126/447 (28%), Gaps = 45/447 (10%) Query: 228 DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 D I P + + + L A E Sbjct: 258 DQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVATLGLLKAIENGYQGALMAPTEILAA 317 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI 347 Q + + LG L+G + +++ L + ++ +H I + Sbjct: 318 QHYEGIRTVCANLGIT------IELLTGSTTKKEKECIYEGLADGSIHMIIGTHALIQEN 371 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 + + + + P + ++ATP + S Sbjct: 372 VNFHNLGLVIIDEQ--------HRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTLSVYG 423 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQ--VDDLLSEIRQRAAINERVLVTTLTKRM------- 458 + + D L + + A +V V Sbjct: 424 DLAVSLIKEMPPGRKPVKTYAVDSSYKDRLCTFFGKEMAEGRQVYVVCPLVEESEKLDLQ 483 Query: 459 -AEDLTEYLEEHGER---VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 AE+L L+E+ + V +H + E+ E++ GE +LV ++ G+++P Sbjct: 484 AAEELYLELKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGEISLLVSTTVIEVGVNVPN 543 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 +++ + A++ G + L Q GR R + + + Sbjct: 544 ATIMCVEGAERFGLSQ----LHQLRGRVGRGAYQSYCILVSDS-------------KNDV 586 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 Q+ + G D+L G A+ + +++ +A + Sbjct: 587 SQERLKLMEQIQDGFELAEQDLLLRGSGQLFGLAQSGLPDLRVANI-IKDIEILVEARKD 645 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + ++ +++ EE + + Sbjct: 646 VLDFANQFGIEKLESVMKEELEKRFGE 672 >UniRef50_P38719 ATP-dependent RNA helicase DBP8 n=25 Tax=Dikarya RepID=DBP8_YEAST Length = 431 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 61/436 (13%), Positives = 106/436 (24%), Gaps = 52/436 (11%) Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL-------------- 267 E L + I + + + Sbjct: 15 ESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFGV 74 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + L + G + P L Sbjct: 75 VLTPTRELAMQIAEQFTALGSSM-NIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAH 133 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA- 386 ++ + G V RA+ L E L S + Sbjct: 134 HIMSSGDDTVGG-------------LMRAKYLVLDEADILLTSTFADHLATCISALPPKD 180 Query: 387 -PQTIYVSATPGNYELEKSG---------GDVVDQVVRP----TGLLDPIIEVRPVATQV 432 QT+ +AT + L + P + Sbjct: 181 KRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKE 240 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L + N+ ++ AE L L++ RV LHS + ER + Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R +L+ ++ GLD+P V LV D I GR AR G AI Sbjct: 301 RANAARILIATDVASRGLDIPTVELVVNYDIP-----SDPDVFIHRSGRTARAGRIGDAI 355 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ---GLNKKVVDILALGQNIAKTKA 608 + + S +AI + ++ + + + + + K + L Q + Sbjct: 356 SFVTQRDVSRIQAIEDRINKKMTETNKVHDTAVIRKALTKVTKAKRESLMAMQKENFGER 415 Query: 609 KGRGKSRPIVEPDNVP 624 K + K + Sbjct: 416 KRQQKKKQNDGKSLRS 431 >UniRef50_A8IS61 Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IS61_CHLRE Length = 488 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 58/386 (15%), Positives = 103/386 (26%), Gaps = 41/386 (10%) Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 S ++ + + L F + + Sbjct: 126 SQPTDVQRGCIP-AILKGRDVIGLAQTGSGKTAAFALPILQALAKDPYGVF--------A 176 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L L + + L + E++ G + P L Sbjct: 177 LVLTPTRELAVQISEQFRALGAGMR-LKELVVIGGVDMQQQARELAKRPHVVVATPGRLA 235 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 D++ + + R R L E L S ++ + + A Sbjct: 236 DWVMSG---LAAG-------------MARCRFLVLDEADRVLDSTFEDDLRRILKALPAA 279 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPVATQVDDLLSEI 439 QT+ SAT + + D V L P + L + Sbjct: 280 RQTLLFSATMTKSLIALQRQSLADAHVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLL 339 Query: 440 RQRA--AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ++ T R L+ LEE G LHS R+ + + + Sbjct: 340 TVVLPARKVRSAIIFAGTCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQV 399 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +L+ ++ GLD+P V V D R + +GR AR G ++ + Sbjct: 400 PLLLATDVASRGLDIPSVDAVINFDLPML-----ARDYVHRVGRTARAGRSGWSVSLVTQ 454 Query: 557 ITPSMAKAIGETERRREKQQKYNEEH 582 + AI E +Q E+ Sbjct: 455 YDVGLVGAIEELIGHTLEQHVLEEQE 480 >UniRef50_B3RJU3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RJU3_TRIAD Length = 512 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 53/393 (13%), Positives = 109/393 (27%), Gaps = 44/393 (11%) Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R+ L D+ ++ L+ + T + ++ I + + E L R K Sbjct: 108 RLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLIHRIK 167 Query: 273 VLLEN------NKLLEEQRLTQRTQFDLEMMNE----------------LGYCSGIENYS 310 E + + + + G + + Sbjct: 168 EEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSLCHVSKYRVVGVIGGKKQKLLEKA 227 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 P L Y + + D +H+ + + ++ + + ++ Sbjct: 228 LETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEKIKIRG 287 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT-------GLLDPII 423 Q V AT + + T + I Sbjct: 288 GKPMSLDT----LQKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQQDI 343 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ LL +++ + ++ T L YL + + LH + Sbjct: 344 LKLKQTSKAGTLLKLLKE--RRHGSTIIFCNTVDSCNWLGHYLAKVDLPLLRLHGGMPPE 401 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER+ + GE+++L+ ++ GLD V V D S I GR Sbjct: 402 ERLIRYDKFQRGEYNILIATDIASRGLDTKNVECVINFDFPI-----SVADYIHRAGRTG 456 Query: 544 RNVN---GKAILYG-DKITPSMAKAIGETERRR 572 R + G+ I + S+ K + E R Sbjct: 457 RVGSKCTGRVISLVSSRKELSLTKLLEEAAARN 489 >UniRef50_A5VIX6 DEAD/DEAH box helicase domain protein n=124 Tax=Lactobacillales RepID=A5VIX6_LACRD Length = 457 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 69/456 (15%), Positives = 132/456 (28%), Gaps = 21/456 (4%) Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 +L + + + V I V + ++ K Sbjct: 10 QLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKIKPE 69 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-G 333 ++ ++ T + ++ N + + + G D L Sbjct: 70 ---DQTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQP 126 Query: 334 LLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 LV+ + I A+ + E L + + Q + Sbjct: 127 QLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDLQMMVF 186 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAA--INE 447 SAT + + VV ++P ++ ++T+ D I + Sbjct: 187 SATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLLTLGEPY 246 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 LV TK A LT+YLE G +V +H ++ R +R +R E+ +V +L Sbjct: 247 LALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAA 306 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAI- 565 G+D+ VSLV D + +GR RN G AI + + + Sbjct: 307 RGIDIDGVSLVINDDLPT-----DLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLIAKLE 361 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + K+ K + + K K K K + Sbjct: 362 ERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYKKRIKK 421 Query: 626 DMSPKALQQKI----HELEGLMMQHAQNLEFEEAAQ 657 + Q++ H++ + E A+ Sbjct: 422 AIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR 457 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 99/624 (15%), Positives = 182/624 (29%), Gaps = 101/624 (16%) Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + AA+L + F P V P+ D S N I Sbjct: 45 VATDDARAARLAEAVSFFDPGIEV-------------ILFPAWDCLPYDRVSPNGDIVAR 91 Query: 123 RLSATKAMLE----RRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLA 177 R+ A +LE R +++V +V+A P + VG I+ + R LA Sbjct: 92 RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y + + G F VRG ++D+FP + + LR++LF ++++ + FDP+T Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F + P + I + +E A E + Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRELFGAVTGD-----------------DPLYEAV 253 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 + +G+E++ TLFDY+P + + + HV + + Sbjct: 254 SAGRKYAGMEHWLPLFHSGL-----ETLFDYMPDAPVTL--DPHV--EEAR---DQRLEQ 301 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTI------YVSATPGNYELEK----SGGD 407 E L A + A + + Sbjct: 302 VRDFFEARRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHLAVRP--VAQLTPFAAAEA 359 Query: 408 VVDQVVRPTGLLDPI----IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + + G V+ D L + A RV+V + + L Sbjct: 360 GSNPDLTDAGGRKGRDFADARVQSGVNVYDVLREHVGALLADGRRVVVAGYSTGARDRLR 419 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDL-------RLGEFDVLVGINLLREGLDMPEVS 516 L+EHG ER++ + R V++ ++ G P Sbjct: 420 SVLKEHGI------------ERVKAVESWAEVEGLPRTTTALVVLALDH---GFTAPG-- 462 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 L I + D G + RA +A + S Sbjct: 463 LAVITEQDILGD---------RLVRAGGRKKRRAANFI--AEASGLNPGDLVVHIDHGIG 511 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP--MDMSPKALQQ 634 +Y+ + G + ++ G + + D+ + Q Sbjct: 512 RYDGLETLDVGGAPHDCLRLVYEGGDKLYVPVENIEVLSRYGSEDSAGQLDRLGGAGWQS 571 Query: 635 KIHELEGLMMQHAQNLEFEEAAQI 658 + ++ + A L A + Sbjct: 572 RKARVKKRLKDMAAALLRIAAERA 595 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 120/401 (29%), Gaps = 37/401 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q + + L Sbjct: 640 PMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPVRL 699 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + + + + L D + +V +H + + R + Sbjct: 700 GQLSRLA--TAKETAQTKAGLAD----GTVDIVVGTHALLSKSVDFKRLGMVIVDEE--- 750 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L+ + V + + T +D + Sbjct: 751 -----QHFGVKQKERLKELRADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAV 805 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 V ++ I + + E + LEE +V H + Sbjct: 806 RTFVLPYDPVVIREAILREHYRGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMP 865 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ ++DVL+ N++ GLD+P + + + AD G + L Q GR Sbjct: 866 ASQLEEVMTAFDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQ----LYQVRGR 921 Query: 542 AARNV-NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R G A L T + T ++R + + G G D+ G Sbjct: 922 VGRAKVRGYAYLTYQPRT-----VLSATAQQRLHVIETLDSLG---AGFQLASHDMDIRG 973 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + V +++ + L++ + + Sbjct: 974 AGNLLGEEQSG-------HIREVGVELYQQMLEEAVADARS 1007 >UniRef50_C4Q5R2 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q5R2_SCHMA Length = 463 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 54/427 (12%), Positives = 118/427 (27%), Gaps = 34/427 (7%) Query: 174 RRLAELQYARNDQAFQRGTFRVRG---EVIDIFPAESDDIALRVELFD-EEVERLSLFDP 229 L+E + ++ TF G ++ A + ++ +++ Sbjct: 8 DALSESDFNLSESLKSYPTFASMGLKDNLLKGIYAYGFEKPSLIQQKTIKQIILGRDLIA 67 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 F+I + + + L L L+ Sbjct: 68 QAQSGTGKTATFSIGTLQNIL--------PEICQIQVLVLAPTRELAVQIHHVMSSLSDY 119 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + P + + L + + + + + Sbjct: 120 LSIRCVACCGGRNNTMQMARELDKGVHVVVGTPGRVLELLRQGNIRLNKLRSLVLDEADE 179 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + + L+N +++ Q + +SAT LE Sbjct: 180 MLNRGLHDQLEEIYRRLPSHTNLNN-------KKSVNCQIVIISATMLKEHLELFQNLTS 232 Query: 410 DQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + V L + L+++ + + +V T+R E L Sbjct: 233 NPVCVLVPRDELSLSDLQQFYIDVGSEEWKFEALNDLFSSVCV-SQTVVFVNTRRKVEWL 291 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+ G V H D+D +R +++ R GE +L+ ++ G+D+ V LV D Sbjct: 292 ASQLKREGFTVAAAHGDLDQSQRESVMKQFRSGECRILISSDMWARGIDVQTVGLVVNFD 351 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYG-DKITPSMAKAIGETERRREKQQKYNE 580 + + IGR+ R G A+ + + I + Sbjct: 352 LPM-----NTSEYLHRIGRSGRFGRTGLAVSFIANAEERKQLLEICNYYQIAIPPAPARL 406 Query: 581 EHGITPQ 587 + + Sbjct: 407 DKMLVTN 413 >UniRef50_A8MAW4 DEAD/DEAH box helicase domain protein n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MAW4_CALMQ Length = 359 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 54/409 (13%), Positives = 112/409 (27%), Gaps = 72/409 (17%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + R ++E + + + V +++D F Sbjct: 8 EELRRAISEYGFNEPTEVQR----SVIPKILDGFNVAMQ--------------------- 42 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + + E L L + + + Sbjct: 43 -ARTGSGKTAAYLLPTMS-MMKGDLG---------EALVISPTRELALQIMNQFLIFNKY 91 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 T+F+ ++ G + + P L D + + + ++ I ++ Sbjct: 92 TKFNSAVV-YGGVGYSGQVKALR-DASLIVATPGRLLDLTGKSIVDLSNVKYLIIDEVDR 149 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M QT +AT + + + Sbjct: 150 MLD-----------------MGFIKDVYTISSLTGNRKQTHAATATLPSEVHDVVKRVLR 192 Query: 410 DQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + + +D ++ + + + ++ T+ A L Sbjct: 193 NPLFIRVSNHEYELPMVDQLVYLV--DGSWRSKYGLTGKVLE--GKSIIFVNTRERAYRL 248 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L G RV LH + R +R R + L+ +L GLD+ +V+L+ D Sbjct: 249 YRQLRNDGLRVLLLHGGMRQETRESTLRRFRELDSGSLISTDLASRGLDIIDVNLILNFD 308 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETER 570 A R + I IGR AR N GKAI + + + + Sbjct: 309 AP-----RDPETYIHRIGRTARLNRRGKAITLATRDELRILNEVTKLTG 352 >UniRef50_B6JX58 ATP-dependent RNA helicase rok1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JX58_SCHJY Length = 519 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 55/426 (12%), Positives = 119/426 (27%), Gaps = 41/426 (9%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ++ + +E+ + ++ + Sbjct: 99 QASPIQ-QYAIPAIEQRRDVLACAPTGSGKTVAYLYPIVRSLQAHKDGG-------FRAV 150 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L + +RL RT ++ +N P L Sbjct: 151 IVLPTRELAEQVNRQLKRLIARTDLKAIFYDKSNEKIQEKNTKLREIYDICVSTPMRLVH 210 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + + L + + + + + ++ + + V Sbjct: 211 AIKSG-LSLANVEFLVLDEADRLFEKNFVEQTDGVLS----------------ACTHPRI 253 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSEIR 440 SAT + E + D + G ++ + + ++ Sbjct: 254 CKCLFSATLPSTVEELAKTVAHDPLRIIVGQKDAATSTIEQKLLFVGNEASKLVIFRQMV 313 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 I RV++ A+ L L G V +H ++ ++R E++ R GE VL Sbjct: 314 SDGEIQPRVVIFVQDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVL 373 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 + +LL G+D V LV D +S S I IGR R + G+AI + K Sbjct: 374 IATDLLARGIDFNGVKLVINYDFP-----QSVHSYIHRIGRTGRAGHGGRAITFYTKEDS 428 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIV 618 K + + + P+ + + + T + + + Sbjct: 429 EYLKLVAGVMKSSGCEVPEWIM--ALPKPTKQLKKKLKYHAPDRKRITTRSSYDRHKEVR 486 Query: 619 EPDNVP 624 + + + Sbjct: 487 KKEAIQ 492 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 84/549 (15%), Positives = 159/549 (28%), Gaps = 57/549 (10%) Query: 112 DASVNEHIEQMRLSATKAMLER---RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID 168 D V+ + R A + + RD +VV I D + + Sbjct: 503 DFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGILR-VAADQLGSLGRYRATSETPP 561 Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI-----------ALRVELF 217 +L + ++A +R VR +D+ ++ +VE+ Sbjct: 562 ------QLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEM- 614 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +E D L P V + I+ A Sbjct: 615 EESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 Q + E + N R ++ D L + V Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRT------ASERKSILDGLKQGTIDAV 728 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + + + + +SATP Sbjct: 729 VGTHQLLSKGASFQELGLLVVDEE--------QRFGVNQKEKIKVLRKDVDVLTLSATPI 780 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTK 456 L S V + + T +A+ + + S IRQ +V Sbjct: 781 PRTLYMSLSGVREMSLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRV 840 Query: 457 RMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 E++ L E G ++ H + E + GE DV++ ++ GLD+P Sbjct: 841 EGIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPR 900 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 V+ + I DA + G + L Q GR R+ S + +T R+R + Sbjct: 901 VNTILIEDAHRFGLAQ----LYQLRGRVGRSGIQAHAWLFYPGNAS----LSDTARQRLR 952 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + G G + D+ G + + + + D+ + LQ+ Sbjct: 953 AIQEFAQLG---SGYQLAMRDMEIRGVGNLLGVQQSG-------QMETIGFDLYMEMLQE 1002 Query: 635 KIHELEGLM 643 + E++G Sbjct: 1003 SLAEIQGQD 1011 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 98/666 (14%), Positives = 198/666 (29%), Gaps = 85/666 (12%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q A+ + + G + + + P +V+ P A + Sbjct: 11 QETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTAL 70 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P+S+ + I +L +L D Sbjct: 71 LELMG--------------WSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDA 116 Query: 137 V---VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +VA+ + L PD+ L G +D A+ LA+L Y R + Q G+ Sbjct: 117 LSWAIVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGS 176 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RG+++DIFP S+ + +R+E F EE+++L FDP + + + + + P Sbjct: 177 WSRRGDIVDIFPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLI 235 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 +++ + M + E L E + G G+ Sbjct: 236 ADQLRETMPDGLEPLLGA---------------------EGTEQLLNGGTPEGMRRLM-- 272 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P +L DYLP D + V I + + + E+ + + Sbjct: 273 ---GLAWGQPASLLDYLP-------DTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEA 322 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYE---LEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + +A + + VDQ L + Sbjct: 323 GLDEGDRDRLWPAVLHREIEAAYALTEVFHGFDMAELLEVDQHPNSFDLASRPV--AAYP 380 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERME 487 Q L I+ V + + A L LEEH R++ D + + R+ Sbjct: 381 NQFGKLGELIKGFQTERTAVWLVSAQPSRAVAL---LEEHDCISRFVPNAGDSNAISRLI 437 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 + G L GL +P + + D + G S R A + Sbjct: 438 EQNTPVALKVR---GTAELE-GLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRT 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + P+ + R ++ + G + + + Sbjct: 494 ---------VDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYA-------- 536 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 + ++ + +++ + G A+ + ++ L +L Sbjct: 537 --DGILRVAADQLGSLGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYA 594 Query: 668 LFIAAS 673 A+ Sbjct: 595 ERQQAA 600 >UniRef50_C1E8E1 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E8E1_9CHLO Length = 770 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 57/420 (13%), Positives = 120/420 (28%), Gaps = 31/420 (7%) Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 + + + + + I L A + + + + ++ Sbjct: 113 TIPHALAGRDILGAAKTGSGKTLAFIVPTLEALYRAKWGRQDGIGGLIIAPTRELATQIF 172 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG--MYRGDR 355 +L + S L G+ D + L +V + + M+ Sbjct: 173 QQLVAAGKHHSLSAGLL--IGGKNVKEEKDTVNRMNL-LVCTPGRLLQHMDETPMFDCVS 229 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALA-PQTIYVSATPGNYELEKSGGDVVDQVVR 414 + L E L E QT+ SAT + + + D Sbjct: 230 LKVLVLDEADRILDLGFRETLTAILENLPKKGRQTLLFSATQTKSVKDLARLSMRDPEYL 289 Query: 415 PT---------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 L ++ + +++ + + I+ + LV + + + E Sbjct: 290 AVHAESAHATPPKLSQMVATCELDKKMETMWAFIKSHLTS--KTLVFLSSCKQVRFVHEM 347 Query: 466 LEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 G V LH + ++RM + VL ++ GLD P V V D Sbjct: 348 FRRMRPGIPVAMLHGRMKQMKRMATFDAFCKAKHTVLFATDVAARGLDFPSVDWVLQADC 407 Query: 524 DKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 I +GR AR GK +L + AK + + K + + Sbjct: 408 P-----EDVPCYIHRVGRTARYTAEGKGLLLLTPSESAFAKELA----AAKVPLKTMKLN 458 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP--IVEPDNVPMDMSPKALQQKIHELE 640 Q + + +L + + ++P+ D++ ++ H + Sbjct: 459 QAKNQKITSSIQGLLGKDTELKYLAQRAVVSYLRSIYLQPNKDVFDVNALDVEAYAHSMG 518 >UniRef50_C3NII4 DEAD/DEAH box helicase domain protein n=12 Tax=Sulfolobaceae RepID=C3NII4_SULIN Length = 360 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 61/409 (14%), Positives = 106/409 (25%), Gaps = 83/409 (20%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + + L E Y + + + + P E+ Sbjct: 24 EDLRKALNEAGYIKPTRVQEV-----------VIP---------------ELMNSKSVIV 57 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + I L L L E ++L + Sbjct: 58 QAKTGSGKTAAYVIPILER--------------NSTALILSPSRELATQILDEIKKLGK- 102 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 + + G + S+ P L D + V + + Sbjct: 103 YKQIDVSLIIGGMSYDDQRQSK-----IVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADR 157 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 M + + SAT + + + Sbjct: 158 MLD-----------------MGFIDDIRMILNHCNAKI-AGFFSATIPDEIMTLAKEFSK 199 Query: 410 DQVVR------PTGLLDPIIEVR--PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 D P + +V LL EI E++LV T+ A Sbjct: 200 DLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLEEI-----NGEKILVFARTRDRARK 254 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L L+ G V L D+ R++ + G+++VLV +L G+D+ +V+ V Sbjct: 255 LYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATDLASRGIDIIDVNKVINF 314 Query: 522 DADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D R + I +GR R G+AI + M K I Sbjct: 315 DIP-----RDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRINNLL 358 >UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryota RepID=Q9SEV8_GUITH Length = 385 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 66/436 (15%), Positives = 131/436 (30%), Gaps = 70/436 (16%) Query: 154 YLKMMLHLTVGMIIDQRAILRRLAE----LQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 + ++ + R L + + R QRG I P + + Sbjct: 1 MNHNIKVFKRAETFEEMELKRELLKGIYGYGFERPSFIQQRG----------ILPIINKE 50 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + F I + +I L Sbjct: 51 ----------------DVVAQSQSGTGKTATFVIGTLQNLSNIENKIKN--------LVL 86 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + + + G I N ++ + P + D L Sbjct: 87 VPTRELATQVEQVFKSIGF-FMKIKTQLLTGGDRIQITNKEQYKKPQIVIGTPGKVLDSL 145 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + ++ + + M+ + LK ++ L + Sbjct: 146 SKKTYYIENLEYLVVDEADEMF-----------------SRGFKIQVLKIIKYLPLEAKI 188 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQR 442 SAT LE + + V + D + EI + Sbjct: 189 ALFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIEIYSK 248 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 I + ++ T+R E L ++++G V YLH ++ ++R +++D R G F +L+ Sbjct: 249 IKI-TQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRILIS 307 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 +L+ G+D+ +V LV D K + I IGR+ R G AI + + S+ Sbjct: 308 TDLVSRGIDIQQVCLVINYDLPKL-----KEVYIHRIGRSGRFGRKGVAINFLSRSDVSI 362 Query: 562 AKAIGETERRREKQQK 577 ++I ++ Sbjct: 363 LRSIEGYYNTNIEEMP 378 >UniRef50_D0MY83 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MY83_PHYIN Length = 661 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 55/507 (10%), Positives = 123/507 (24%), Gaps = 67/507 (13%) Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 + P ++ + L F + Sbjct: 22 GFEHMTPVQAATLPL--------FLSNKDVCVDACTGSGKTLSFVLPIVQLLKAKLADGS 73 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + L ++ + ++ + L Sbjct: 74 IT------------APRHADLTKLVAMVISPTRELARQIFECAEKFFARALSTVQLLLFV 121 Query: 318 PGEPPPTLFDYLPA---DGLLVVDESHVTIPQIGG----MYRGDRARKETLVEYGFRLPS 370 G + +V+ T + L E L Sbjct: 122 GGTSVDEDLSLIRGAVGKCSVVIGTPGRTEDLLNRCVGSSVETREFEILILDEADTLLDM 181 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT----------GLLD 420 + K E +T SAT + + + L Sbjct: 182 GFEVSLNKILEHLPKQRRTGLFSATQTQEVKALARAGLRNPATISVQVANNTQITPATLQ 241 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH-----GERVRY 475 + ++ L ++ A E+++V T + + LEE V Sbjct: 242 NYYCLVGHDQRLSALHHFVQ--AKKGEKLIVFFSTCGSVDFFSRVLEELFKGKNDFPVVA 299 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 LH + +R + +LV +++ G+D+P+V + D + Sbjct: 300 LHGKMPQKKRTTNYDHFSALKSGLLVCTDVVARGIDLPDVDWIVQYDPP-----QDPNFF 354 Query: 536 IQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + +GR AR G A+ + + + R+ + T + + KV Sbjct: 355 VHRVGRTARAGRSGCALSFLSSNEDAYV----NFLKIRKVPCEEMTLPLDTMEDVLPKVK 410 Query: 595 DILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ-------------QKIHELEG 641 + +++ + K + K L KI+EL Sbjct: 411 SFILEDRDLLEKGTKAFMAFVRSYKEHQCQFIFRFKELDLGAAARGFCLLQLPKINELRN 470 Query: 642 LMMQHAQNLEFEEAAQIRDQLHQLREL 668 + + ++ + +D+ + Sbjct: 471 VRIDFSKADIKTTDIKFKDKAREKERQ 497 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 92/650 (14%), Positives = 179/650 (27%), Gaps = 86/650 (13%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRP---TMVLAPNKTLAAQLYGEMKEFFPENAV 86 T G+ GS IA + ++ A +L E+ F P+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS-AI 145 +P + S ++ + RL+ +L +V+ V+ A+ Sbjct: 75 RL-------------LPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTAL 121 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 LG P+ G +++ A+ +L + Y + G + +RG + D+FP Sbjct: 122 QRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S+ + R++LF +E+E++ F+P T + + + + P + +E Sbjct: 182 GSN-LPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + +GIE+Y E +L Sbjct: 241 VFEGDPSRC-----------------SIYKDASLGIPSAGIESYLPLFF-----EENSSL 278 Query: 326 FDYLPA--DGLLVVDESHVTIPQIGGMYRGDRARK----ETLVEYGFRLPSALDNRPLKF 379 FDYLP D + +V I G ++ +R L + F Sbjct: 279 FDYLPRSGDPVWLVSI-GDVEETIKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFF 337 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + A L V + V + D +S + Sbjct: 338 STSKPYAR-------------LSLENEAVEKNEFFAVPDI-------SVHRRDADPISRL 377 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD---IDTVERMEIIRDLRLGE 496 R A ++ ++ L + V + E + I + E Sbjct: 378 RNVVASENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSLYSLKPEGFDSIAEFIKSE 437 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 + L G P +L+ I +A+ R + A Sbjct: 438 SLFGLVTAPLFNGFSWPSENLIVITEAELFTTTT-------RQRRKGKANE-NADSDMLF 489 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLN-----KKVVDILALGQNIAKTKAKGR 611 S K +Y + ++ + + GQ + Sbjct: 490 KDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLYVPVQQL 549 Query: 612 GKSRPIVEPDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 D + + + + A L AA+ Sbjct: 550 QMVTRYAGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARA 599 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 49/432 (11%), Positives = 111/432 (25%), Gaps = 35/432 (8%) Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F E D + P V + ++ A Sbjct: 615 AFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFVAVMGGKQ 674 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 Q + + LS + + Sbjct: 675 VAILAPTTLLAEQHVATWKDRFAD------WPVRIVELSRFKTTKEINVALAAIAKGEAD 728 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 ++ +H + + + R + + ++AT Sbjct: 729 IIIGTHKLLSKETQFANLGLVIADEE--------HRFGVRQKDALKALRAEVDILTLTAT 780 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVLVTTL 454 P L + + + + T + V + DD++ + + +V Sbjct: 781 PIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHN 840 Query: 455 TKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 ++ L+E H + E ++R+ ++L+ ++ G+D+ Sbjct: 841 EVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV 900 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P + + + ADK G + L Q GR R+ + + A+ + + R Sbjct: 901 PTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHRAYAYLLVPNSE----ALSKQAQLR 952 Query: 573 EKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 + EE G G + D+ G + E + + + L Sbjct: 953 LNAIQAMEELG---SGFYLAMHDLEIRGAGEVLGDKQSG-------EIHEIGFQLYTEML 1002 Query: 633 QQKIHELEGLMM 644 + + L Sbjct: 1003 NRAVKSLRSGKE 1014 >UniRef50_Q84TG1 DEAD-box ATP-dependent RNA helicase 57 n=9 Tax=Magnoliophyta RepID=RH57_ARATH Length = 541 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 111/369 (30%), Gaps = 39/369 (10%) Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + ++ + + F + + + Sbjct: 163 EPTPIQRQAIP-ILLSGRECFACAPTGSGKTFAFICPMLIKL-------KRPSTDGIRAV 214 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 L E ++L + + F + + L P L Sbjct: 215 ILSPARELAAQTAREGKKLIKGSNF---HIRLMTKPLVKTADFSKLWCDVLISTPMRLKR 271 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 + A + + ++ + + ++ ++ + + Sbjct: 272 AIKAKKIDLSKVEYLVLDESDKLFEQSLLKQID----------------CVVKACSNPSI 315 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----IIEVRPVATQVDDLLSEIRQRA 443 SAT + E + + D V G + + + A + L +RQ Sbjct: 316 IRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSF 375 Query: 444 AI--NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A N VL+ +K A++L + L+ R +HSD+ ER + R GE VL+ Sbjct: 376 AESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLI 435 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 +++ G+D ++ V D S + I IGR+ R G+AI + + Sbjct: 436 ATDVIARGMDFKGINCVINYDFP-----DSASAYIHRIGRSGRAGRSGEAITFYTEQDVP 490 Query: 561 MAKAIGETE 569 + I T Sbjct: 491 FLRNIANTM 499 >UniRef50_A8XCU0 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8XCU0_CAEBR Length = 1248 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 46/404 (11%), Positives = 105/404 (25%), Gaps = 36/404 (8%) Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI-KEELAARRKVLLENN 278 ++ F + + + + I L L Sbjct: 697 QILAGYDVIGQAETSAGKTAAFGLPIVDYILKMDQNIRDEGFGTSPIALVIAPVRELAQQ 756 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + ++ T + L D + + + Sbjct: 757 IVESFRQYACGTD-IKIRLAIGQQSRARCLADIREGCDVVVGTSGRLMDLIGKGEVCLDH 815 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + + + + + QT+ SAT N Sbjct: 816 LKFLVLDEADRLLQDVKQDPCGHLGA-IINDHDFMRNAD--------NRQTLMTSATFDN 866 Query: 399 YELEKSGGDVV------DQVVR--PTGLLDPIIEVRPVAT----QVDDLLSEIRQRAAIN 446 E + + D V +G L +++ + D L + Sbjct: 867 AVEEVANRLMKKVDGQNDLVRIVLASGRLSNRVDLHFHEAGGAAKHDTLKKILLDTNERG 926 Query: 447 E--RVLVTTLTKRMAEDLTEYLE------EHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E + L+ K + L ++ E V+ LH D R I + G Sbjct: 927 EIPKTLIFVQKKASCDFLASKIQMIGQKLEKDFGVQTLHGDRSQDNRDNTISAFKNGSLK 986 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 +LV ++L G+D+ ++ V D + I GR R G + + Sbjct: 987 ILVTTDVLSRGIDVVDLERVVNFDLPDGSVETGVDTFIHRSGRTGRMHKGTCHSFINPGF 1046 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + + + + + ++ + + ++++ G N Sbjct: 1047 DNDVRLVPKLIELVKSTGNPDDL-----AKVPEFMLELAKRGSN 1085 >UniRef50_Q8SY39 CG32344 n=9 Tax=Diptera RepID=Q8SY39_DROME Length = 827 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 48/431 (11%), Positives = 117/431 (27%), Gaps = 19/431 (4%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E ++ ++ + I V + L + + E Sbjct: 49 ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR-REPT 107 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K L+ + ++ + L G+ + F + ++V Sbjct: 108 KGARALILSPTRELAVQTYKFIKELGRFMELKSIL--VLGGDSMDSQFSAIHTCPDVIVA 165 Query: 339 ESHVTIPQIGGM-YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + M + + E + + + QT+ SAT Sbjct: 166 TPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATLP 225 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSEIRQRAAINERVL 450 +E + + D V+ + + + + L+ ++ + + + Sbjct: 226 KLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTV 285 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V T+ E ++ L E G ++S +D R + VL+ ++ G+ Sbjct: 286 VFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGI 345 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+P + V L + + +GR AR G A + + Sbjct: 346 DIPSLDFVVNLHFP-----GKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFL 400 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 R + I + + + A S + ++ Sbjct: 401 NRPFNIHDSSALGTIPQD--LLEEEHLTVTDIKKSHHIAGVLRTSENAYKKYLSSRPVAS 458 Query: 630 KALQQKIHELE 640 ++ +++ Sbjct: 459 TDANARVKKIK 469 >UniRef50_A4RXF6 Predicted protein n=2 Tax=Ostreococcus RepID=A4RXF6_OSTLU Length = 346 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 90/335 (26%), Gaps = 46/335 (13%) Query: 254 ERIVQAMEEIKEELAARRKVLLENN------KLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + A L + + + L + ++ NE+ + Sbjct: 42 VGRARTGTGKTLAFALPVIERLLTDGTSGRSRNPKCIVLAPTRELAKQVENEICITAP-- 99 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGF 366 S G P L +VV + L E Sbjct: 100 --SLETVCVYGGTPIGQQEGKLRRGVDIVVGTPGRVQDLMNRRSLDLGEIEFVVLDEADQ 157 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 L + + + QT SAT ++ + + + L Sbjct: 158 MLNVGFEEDVEAILQDCPESRQTFLFSATMPSWVKQITKKFLK-PGHVVVDL-------- 208 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 +++ + T TKR A++LT L LH DI +R Sbjct: 209 -------------------DKKAICFTQTKRAADELTAALGRR-VASEVLHGDIAQAQRE 248 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 ++ R F VL+ ++ GLD+ +V LV + S + GR R Sbjct: 249 RTLQRFRDNRFSVLIATDVAARGLDISDVDLVIHYELPN-----DVESFVHRCGRTGRAG 303 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 G AI M + I + + Sbjct: 304 QLGAAIAMHTDRESYMIRRIKKETGCEFRTIGIPS 338 >UniRef50_B6KP61 ATP-dependent RNA helicase, putative n=4 Tax=Toxoplasma gondii RepID=B6KP61_TOXGO Length = 983 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 98/365 (26%), Gaps = 17/365 (4%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + + + + + + Sbjct: 34 PTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTACFLLP-LLDLLGEHSS 92 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + + + ++ + S + GE F L + +++ Sbjct: 93 VVGVRAVLIAPTRELVAQIHRVCSKLL--HSSSLRVCCLLGGENYSKQFLALSRNPDVLL 150 Query: 338 DESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 I + AR L E + + Q + VSAT Sbjct: 151 TTVGRGSQLIHDKVLSLSAARFLVLDEADRIFELGWKEQLSMLFAALPASKQVVLVSATL 210 Query: 397 GNYELEKSGGDVVDQVVRPT-------GLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + + + D L A +V LL ++Q E+V Sbjct: 211 PGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKVPTLLFLLKQSIQKKEQV 270 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV T+ A L + E ++ +D ER++ + + G+ VL+ ++ G Sbjct: 271 LVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAFKKGKISVLLVTDVAARG 330 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGET 568 LD+P + V D S + + +GR AR G A A + Sbjct: 331 LDIPHLPSVINFDFP-----SSAKLFVHRVGRTARAGRSGTAFSLVTGDDLPYAVELMSF 385 Query: 569 ERRRE 573 R Sbjct: 386 LGGRL 390 >UniRef50_Q238V7 Type III restriction enzyme, res subunit family protein n=2 Tax=Oligohymenophorea RepID=Q238V7_TETTH Length = 1130 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 52/490 (10%), Positives = 122/490 (24%), Gaps = 56/490 (11%) Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + ++ + +E + F I + Sbjct: 319 FNMPTPIQRKAIPLILEG-RDVVACSRTGSGKTAAFIIPLINKLQNHSRIVGA------R 371 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L L + + T + G+ + S + P L Sbjct: 372 ALIVVPTRELALQIASVLKTFIKFTDLTYT-LIVGGHGLEGQFESLASNPDIIIATPGRL 430 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L + + + + ++ + + Sbjct: 431 SQLIDETDLSLNKVEFLIFDECD-----------------YLFEMGFADQMKTILKKVSQ 473 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTG-------LLDPIIEVRPVATQVDDLLSE 438 QT+ SAT + + + V + + ++ L+ Sbjct: 474 QRQTLMFSATIPEELSSFARAGLKEYVFVKLDSEFTINENITLNFILTRNNEKIASLVYL 533 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ E +V TK + + L++ ++ +D R + I + R + + Sbjct: 534 LKSVIPSEENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCN 593 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKI 557 V+V +L G+D+P V+ V D S + I GR AR G Sbjct: 594 VMVVTDLASRGIDLPNVNNVIHYDYP-----ASTKIFIHRSGRTARAGRKGNTYALMGMN 648 Query: 558 TPSMAKAIGETERRREK-QQKYNEEHGITPQGL--------NKKVVDILALGQNIAKTKA 608 I R+ Q + ++ G + + IL Sbjct: 649 EIMYVSEIMVLAGRKLSNQVEDMKDTSKAIYGAIPVQLIGDEQAKIQILLKEDIEINKMQ 708 Query: 609 K---------GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + +S + ++ H+ + L + + Sbjct: 709 QLANNAYIQFNKSRSSASKASIKDSYQVKIDSINPLFHKFAEDEKEKMDYLSKIKNYKPA 768 Query: 660 DQLHQLRELF 669 ++ + Sbjct: 769 ISALEIYKQR 778 >UniRef50_Q39189 DEAD-box ATP-dependent RNA helicase 7 n=18 Tax=Embryophyta RepID=RH7_ARATH Length = 671 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 113/401 (28%), Gaps = 41/401 (10%) Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 ++ FD ++ + F + V + + M + Sbjct: 120 FPIQASTFDMVLDG-ADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVL 178 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 L + ++ + G + G+ P L Sbjct: 179 V---------------LLPTRELAKQVAADFDAYGG--SLGLSSCCLYGGDSYPVQEGKL 221 Query: 330 PADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE--ALA 386 +VV I + L E L + Sbjct: 222 KRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTK 281 Query: 387 PQTIYVSATPGNYELEKSGGDV-VDQVVRP-TGL-----LDPIIEVRPVATQ--VDDLLS 437 QT+ SAT ++ S + DQ G + + + + + L+ Sbjct: 282 VQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIP 341 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 +I + + ++ TK +L+ L+ R LH +I +R + R G+F Sbjct: 342 DIISCYSSGGQTIIFAETKVQVSELSGLLD----GSRALHGEIPQSQREVTLAGFRNGKF 397 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 LV N+ GLD+ +V L+ + R + I GR R N G A+ D Sbjct: 398 ATLVATNVAARGLDINDVQLIIQCEPP-----REVEAYIHRSGRTGRAGNTGVAVTLYDS 452 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL 597 S I + + + + I G + + Sbjct: 453 R-KSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVK 492 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.133 0.319 Lambda K H 0.267 0.0406 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,430,448,131 Number of Sequences: 3077464 Number of extensions: 89453451 Number of successful extensions: 521907 Number of sequences better than 1.0e-01: 1000 Number of HSP's better than 0.1 without gapping: 11401 Number of HSP's successfully gapped in prelim test: 11670 Number of HSP's that attempted gapping in prelim test: 457902 Number of HSP's gapped (non-prelim): 40055 length of query: 673 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 537 effective length of database: 621,861,252 effective search space: 333939492324 effective search space used: 333939492324 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 97 (42.0 bits)