BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (673 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 906 0.0 UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 885 0.0 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 808 0.0 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 752 0.0 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 751 0.0 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 736 0.0 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 724 0.0 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 723 0.0 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 712 0.0 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 708 0.0 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 697 0.0 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 686 0.0 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 667 0.0 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 665 0.0 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 635 e-180 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 621 e-176 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 520 e-145 UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular or... 455 e-126 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 441 e-122 UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=La... 400 e-109 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 323 1e-86 UniRef50_C1N749 Exinuclease ABC subunits B and C-containing prot... 172 5e-41 UniRef50_A4MZM2 Excinuclease ABC subunit B n=2 Tax=Gammaproteoba... 112 5e-23 UniRef50_UPI0000D5304B excinuclease ABC subunit B n=1 Tax=Psychr... 104 1e-20 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 99 5e-19 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 98 1e-18 UniRef50_Q6QUN4 Excinuclease ABC subunit B (Fragment) n=1 Tax=Li... 97 1e-18 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 96 4e-18 UniRef50_UPI0001854C73 excinuclease ABC subunit B n=1 Tax=Helico... 96 5e-18 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 96 6e-18 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 95 1e-17 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 91 1e-16 UniRef50_A4TTM9 Excinuclease ABC, B subunit n=1 Tax=Magnetospiri... 91 1e-16 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 89 8e-16 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 87 2e-15 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 86 3e-15 UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 ... 86 7e-15 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 85 1e-14 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 84 2e-14 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 84 2e-14 UniRef50_Q4E9T4 Excinuclease ABC, B subunit n=2 Tax=Wolbachia en... 83 4e-14 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 81 1e-13 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 81 2e-13 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 80 2e-13 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 80 2e-13 UniRef50_D1ZW74 Whole genome shotgun sequence assembly, contig_8... 80 3e-13 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 79 5e-13 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 79 5e-13 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 79 5e-13 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 79 7e-13 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 78 9e-13 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 77 1e-12 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 77 1e-12 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 76 5e-12 UniRef50_C7S707 UvrB (Fragment) n=1 Tax=Stenotrophomonas sp. LMG... 75 8e-12 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 75 8e-12 UniRef50_Q1ZIM6 Excinuclease ABC subunit B n=1 Tax=Psychromonas ... 74 1e-11 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 74 2e-11 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 74 2e-11 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 74 2e-11 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 74 3e-11 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 74 3e-11 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 73 4e-11 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 72 5e-11 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 72 5e-11 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 72 1e-10 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 71 1e-10 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 71 1e-10 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 70 2e-10 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 70 2e-10 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 70 3e-10 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 69 4e-10 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 69 4e-10 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 69 6e-10 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 69 6e-10 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 69 8e-10 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 69 9e-10 UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamil... 67 2e-09 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 67 2e-09 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 67 3e-09 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 65 7e-09 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 65 1e-08 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 65 1e-08 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 65 1e-08 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 64 2e-08 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 64 2e-08 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 64 2e-08 UniRef50_A3WDE5 Possible helicase n=1 Tax=Erythrobacter sp. NAP1... 64 3e-08 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 63 3e-08 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 63 4e-08 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 62 6e-08 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 62 6e-08 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 62 6e-08 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 62 7e-08 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 62 9e-08 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 62 9e-08 UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicas... 62 1e-07 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 62 1e-07 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 61 1e-07 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 61 1e-07 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 61 1e-07 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 61 1e-07 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 61 2e-07 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 61 2e-07 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 60 2e-07 UniRef50_Q045P7 Superfamily II DNA and RNA helicase n=23 Tax=Lac... 60 2e-07 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 60 2e-07 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 60 2e-07 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 60 2e-07 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 60 3e-07 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 60 3e-07 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 60 3e-07 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 59 5e-07 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 59 5e-07 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 59 5e-07 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 59 6e-07 UniRef50_UPI0000D54D15 excinuclease ABC subunit B n=1 Tax=Psychr... 59 6e-07 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 59 6e-07 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 59 8e-07 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 58 1e-06 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 57 2e-06 UniRef50_C7P023 Helicase domain protein n=11 Tax=cellular organi... 57 2e-06 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 57 3e-06 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 57 3e-06 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 57 3e-06 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 57 3e-06 UniRef50_C7YH53 Putative uncharacterized protein n=1 Tax=Nectria... 57 3e-06 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 57 3e-06 UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bactero... 56 4e-06 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 56 4e-06 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 56 4e-06 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 56 4e-06 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 56 4e-06 UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya... 56 5e-06 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 56 5e-06 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 56 5e-06 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 56 6e-06 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 55 6e-06 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 55 7e-06 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 55 7e-06 UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Str... 55 7e-06 UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio ... 55 7e-06 UniRef50_C7ZM77 Putative uncharacterized protein n=2 Tax=Nectria... 55 8e-06 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 55 8e-06 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 55 9e-06 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 55 1e-05 UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Tr... 55 1e-05 UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidale... 55 1e-05 UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio ... 55 1e-05 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 54 1e-05 UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Ta... 54 1e-05 UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyos... 54 1e-05 UniRef50_Q2JJJ7 Primosomal protein N' n=3 Tax=Cyanobacteria RepI... 54 1e-05 UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 54 1e-05 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 54 2e-05 UniRef50_A7BLK3 Putative uncharacterized protein n=1 Tax=Beggiat... 54 2e-05 UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryot... 54 2e-05 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 54 2e-05 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 54 2e-05 UniRef50_A7HND9 Primosomal protein N' n=1 Tax=Fervidobacterium n... 54 2e-05 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 54 2e-05 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 54 2e-05 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 54 2e-05 UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax... 54 2e-05 UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n... 54 2e-05 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 54 3e-05 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 54 3e-05 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 54 3e-05 UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiother... 54 3e-05 UniRef50_Q1GXV2 Replication restart DNA helicase PriA n=6 Tax=ce... 53 3e-05 UniRef50_B3RW01 Putative uncharacterized protein n=1 Tax=Trichop... 53 3e-05 UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genom... 53 3e-05 UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF... 53 3e-05 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 53 3e-05 UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Dein... 53 4e-05 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 53 4e-05 UniRef50_Q110J1 Replication restart DNA helicase PriA n=6 Tax=Ba... 53 4e-05 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 53 4e-05 UniRef50_A8QLH8 Fanconi anemia M n=2 Tax=Danio rerio RepID=A8QLH... 53 4e-05 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 53 5e-05 UniRef50_Q9WY22 Primosomal protein N' n=13 Tax=Thermotogaceae Re... 53 5e-05 UniRef50_A5G4E1 Type III restriction enzyme, res subunit n=1 Tax... 53 5e-05 UniRef50_Q9HMW5 ATP-dependent RNA helicase homolog eIF-4A n=2 Ta... 53 5e-05 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 53 5e-05 UniRef50_Q2JF81 ATP-dependent DNA helicase RecQ n=3 Tax=Frankia ... 52 5e-05 UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii Re... 52 5e-05 UniRef50_D0NFP0 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phy... 52 5e-05 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 52 6e-05 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 52 6e-05 UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Berm... 52 6e-05 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 52 6e-05 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 52 6e-05 UniRef50_UPI0001C36ED7 primosomal protein N'''' n=1 Tax=Ruminoco... 52 6e-05 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 52 7e-05 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 52 8e-05 UniRef50_A6LJP7 Primosomal protein N' n=2 Tax=Thermosipho RepID=... 52 8e-05 UniRef50_Q2RK26 Replication restart DNA helicase PriA n=1 Tax=Mo... 52 8e-05 UniRef50_C9LLK8 Primosomal protein n=1 Tax=Dialister invisus DSM... 52 8e-05 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 52 9e-05 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 52 9e-05 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 52 1e-04 UniRef50_D1ZJG2 Putative SGS1 protein n=1 Tax=Sordaria macrospor... 52 1e-04 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 52 1e-04 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 52 1e-04 UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus Re... 52 1e-04 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 52 1e-04 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 52 1e-04 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 51 1e-04 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 51 1e-04 UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Sti... 51 1e-04 UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA 51 1e-04 UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7V... 51 1e-04 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 51 1e-04 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 51 1e-04 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 51 1e-04 UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 51 1e-04 UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 ... 51 1e-04 UniRef50_C4M4V5 RecQ family helicase, putative n=2 Tax=Entamoeba... 51 1e-04 UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukary... 51 1e-04 UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Pir... 51 1e-04 UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=ro... 51 1e-04 UniRef50_A4VTF2 Primosomal protein N' (Replication factor Y)-sup... 51 1e-04 UniRef50_B3LA92 ATP-dependent DNA helicase, putative n=1 Tax=Pla... 51 1e-04 UniRef50_B9MR35 Primosomal protein N' n=1 Tax=Anaerocellum therm... 51 1e-04 UniRef50_D2LVR6 Primosomal protein N' n=1 Tax=Bacillus cellulosi... 51 2e-04 UniRef50_A7EFH4 ATP-dependent DNA helicase mph1 n=2 Tax=Scleroti... 51 2e-04 UniRef50_C7MDQ1 ATP-dependent DNA helicase RecQ n=1 Tax=Brachyba... 51 2e-04 UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 T... 51 2e-04 UniRef50_D0Z909 Putative helicase n=1 Tax=Edwardsiella tarda EIB... 51 2e-04 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 51 2e-04 UniRef50_A0LD66 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 51 2e-04 UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Ga... 51 2e-04 UniRef50_B0K293 Primosomal protein N' n=8 Tax=Thermoanaerobacter... 51 2e-04 UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gl... 51 2e-04 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 51 2e-04 UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Te... 51 2e-04 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 51 2e-04 UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Po... 51 2e-04 UniRef50_B4WMN6 Primosomal protein N', putative n=1 Tax=Synechoc... 51 2e-04 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 50 2e-04 UniRef50_C2M4N3 Primosomal protein N` n=1 Tax=Capnocytophaga gin... 50 2e-04 UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Ac... 50 2e-04 UniRef50_B1ZW59 Primosomal protein N' n=1 Tax=Opitutus terrae PB... 50 2e-04 UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Ba... 50 2e-04 UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n... 50 2e-04 UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genom... 50 2e-04 UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Rein... 50 2e-04 UniRef50_B5JME8 Primosomal protein N', putative n=1 Tax=Verrucom... 50 2e-04 UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax... 50 3e-04 UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma ... 50 3e-04 >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/671 (66%), Positives = 539/671 (80%), Gaps = 10/671 (1%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP +VL Sbjct: 17 PFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPALVL 76 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 APNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQMR Sbjct: 77 APNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQMR 136 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 LSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY R Sbjct: 137 LSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQYTR 196 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RFT+ Sbjct: 197 SDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRFTV 256 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G+C Sbjct: 257 YPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMGFC 316 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE LV Sbjct: 317 KGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENLVG 376 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G VV+QVVRPTGL+DP I Sbjct: 377 YGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEHQ-GQVVEQVVRPTGLIDPAI 435 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 +VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDIDTV Sbjct: 436 DVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDIDTV 495 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAA Sbjct: 496 ERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 555 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL--ALGQ 601 R++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ G Sbjct: 556 RHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIIDGVYGG 615 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 ++ + R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 616 DVER-------DGRSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/666 (63%), Positives = 541/666 (81%), Gaps = 2/666 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS +V+QVVRPTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKS-DQIVEQVVRPTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGR-GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + D + PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLR 666 ++ +L+ Sbjct: 665 EILRLK 670 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/669 (61%), Positives = 512/669 (76%), Gaps = 8/669 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA + A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAYEEQ-AVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K VD + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKS-VDEVRFI 598 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA---LQQKIHELEGLMMQHAQNLEFEEAAQ 657 +A + + G++ P + + +P++ L+ + ELE M + A L+FE AA+ Sbjct: 599 TRVADARVEREGEA---PAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAAR 655 Query: 658 IRDQLHQLR 666 +RDQL ++R Sbjct: 656 LRDQLFEVR 664 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/702 (55%), Positives = 503/702 (71%), Gaps = 58/702 (8%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+V+A Sbjct: 4 FQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVMA 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ +R Sbjct: 64 HNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLRH 123 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY RN Sbjct: 124 SATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYERN 183 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D RG FR++G+V++I PA D + +R+E F +E+E + L DP+TG+I++++ +Y Sbjct: 184 DLELVRGRFRLKGDVLEIVPAYEDRV-IRIEFFGDEIEAIRLIDPVTGEILNSLSALRVY 242 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+GYC+ Sbjct: 243 PARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGYCN 302 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 GIENYSR L+GR GEPP L DY A D LLVVDESHVT+PQI GMY GDRARK+ LV+ Sbjct: 303 GIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVLVD 362 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS------------------- 404 +GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S Sbjct: 363 HGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFYVQ 422 Query: 405 -GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-----RQRAAINERVLVTTLTKRM 458 G V++QV+RPTG++DP + VRP A QVDDLL EI R + ERV+VTTLTKRM Sbjct: 423 GSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTKRM 482 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 AEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEVSLV Sbjct: 483 AEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSLV 542 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 AILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q +Y Sbjct: 543 AILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQLQY 602 Query: 579 NEEHGITPQGLNKK----VVDILALGQNIAKTKAKGRGKSRPIVEPD---------NVPM 625 N +H ITP+ + KK ++ LA+ SR + +PD +P+ Sbjct: 603 NRQHNITPKPIVKKNSNAILSFLAI--------------SRKLNDPDLEKAFQAAQEIPL 648 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 P+ + Q LE M + A+NLEFEEAAQ+RD++ +LR+ Sbjct: 649 SEIPELIGQ----LELKMKEAAKNLEFEEAAQLRDRIKKLRQ 686 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/665 (56%), Positives = 490/665 (73%), Gaps = 13/665 (1%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+V+A Sbjct: 15 FHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIA 74 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I+++R Sbjct: 75 HNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRH 134 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ RN Sbjct: 135 SATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQFERN 194 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + ++ Sbjct: 195 DIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHLVLF 254 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+GY + Sbjct: 255 PATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTN 314 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ LV+Y Sbjct: 315 GIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDY 374 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 GFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ VV+Q++RPTGLLDP +E Sbjct: 375 GFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTET-VVEQIIRPTGLLDPEVE 433 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 VRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI T+E Sbjct: 434 VRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLE 493 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGRAAR Sbjct: 494 RTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAAR 553 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 N +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D+++ I Sbjct: 554 NSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLIS----IT 609 Query: 605 KTKAKGRGKSRPIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 KT + V D V M+ K Q+ I +L+ M + A+ L+FE AAQIRD + Sbjct: 610 KT-------NEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDMVL 662 Query: 664 QLREL 668 +L+ + Sbjct: 663 ELKSM 667 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/694 (54%), Positives = 488/694 (70%), Gaps = 36/694 (5%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V+ Sbjct: 13 PFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVM 72 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++R Sbjct: 73 VQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLR 132 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY R Sbjct: 133 HSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVR 192 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V I Sbjct: 193 NDVDFHRGTFRVRGDTVEIIPM-YEELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYI 251 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GYC Sbjct: 252 FPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYC 311 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLVE Sbjct: 312 NGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVE 371 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V+Q++RPTGL+DP + Sbjct: 372 HGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADG-YVEQIIRPTGLVDPQV 430 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT+ Sbjct: 431 VVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTL 490 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 491 RRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAA 550 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI------- 596 RNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 551 RNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARE 610 Query: 597 -------------------LALGQ----NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 +G ++ + A G G + P V+P ++P K L Sbjct: 611 DADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLP----AKDLA 666 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 I ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 667 DLIEQMSQQMHQAAADLQFELAARLRDEVGELKK 700 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/668 (55%), Positives = 480/668 (71%), Gaps = 10/668 (1%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P ++++ Sbjct: 9 FRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVLLIS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIERLRL 128 Query: 125 SATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 AT ++L R+DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L + R Sbjct: 129 KATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLHFVR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG+VID+ P + ALRVE F +E+ERL LFD TG+I I Sbjct: 189 DDSDLAPGKFRVRGDVIDLVPMHEES-ALRVEFFGDEIERLQLFDHTTGEIFEDEEYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ ELGYC Sbjct: 248 YPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 YGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLDP I Sbjct: 368 YGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLDPEI 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I ++ Sbjct: 428 VVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q GRAA Sbjct: 488 ERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-ALGQN 602 RNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L G Sbjct: 548 RNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTTGVA 607 Query: 603 IAKTKAKGR-----GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 A+ + + R +SR +E ++ + + L EL M + A+++EFE+AA Sbjct: 608 DAEDRFRRRRFGLEQRSRRGIE--DLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAAY 665 Query: 658 IRDQLHQL 665 +RD++ +L Sbjct: 666 LRDEVTKL 673 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/690 (53%), Positives = 488/690 (70%), Gaps = 30/690 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKK------VVDIL 597 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K ++D L Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 598 A-LGQNIAKTKAKGRGKS--RPI--VEPDN-----------------VPMDMSPKALQQK 635 +G + ++ + K RP+ ++P N P D KA + K Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +LE M + A L+FEEAA+IRD + L Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSL 730 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/679 (55%), Positives = 495/679 (72%), Gaps = 15/679 (2%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT++L+ Sbjct: 36 FELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTLILS 95 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I+++RL Sbjct: 96 HNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLRL 155 Query: 125 SATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +AT A+L R+DVVVV+SVS IYG+G+P + ++ + G + LRRL + Y R Sbjct: 156 AATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSLYVR 215 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ + I Sbjct: 216 NDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDAYKI 274 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM ELG+C Sbjct: 275 YPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMRELGHC 334 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK LVE Sbjct: 335 SGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNLVE 394 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 YGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLDPII Sbjct: 395 YGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLDPII 454 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+DT+ Sbjct: 455 EVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDVDTL 514 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GRAA Sbjct: 515 ERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRAA 574 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK-KVVDILALGQN 602 RNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K K +++ A + Sbjct: 575 RNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAGTEG 634 Query: 603 IAKT---KAKGRGKS-RPIVEPDNVPM--------DMSPKALQQKIHELEGLMMQHAQNL 650 A++ K K G + RP VE ++ M MS L++ I + LM + A+ L Sbjct: 635 FAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAAKKL 694 Query: 651 EFEEAAQIRDQLHQLRELF 669 +F EAAQ RD++ ++ EL Sbjct: 695 DFIEAAQYRDEVLKMEELL 713 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/693 (51%), Positives = 476/693 (68%), Gaps = 28/693 (4%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEG-LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 +PF++ + F P GDQP AI L +G ++D L +QTLLGVTGSGKTFT+AN+I Q+ T+ Sbjct: 39 QPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTTL 98 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 ++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E+ Sbjct: 99 IIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVEK 158 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++QY Sbjct: 159 LRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQY 218 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 219 DRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRVSFFGDEIEMIAEFDEVTGDTLSQYDAL 277 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ +G Sbjct: 278 PIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETMG 337 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK TL Sbjct: 338 FCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKITL 397 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S +VV+QV+RPTGLLDP Sbjct: 398 VDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQ-NVVEQVIRPTGLLDP 456 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 457 RVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDTA 516 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+GR Sbjct: 517 TLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMGR 576 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ + Q Sbjct: 577 AARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFIQ 636 Query: 602 NI-----AKTKAKGRGKSRPIVEPDNVPMDMSPK-----ALQQKIHELEGL--------- 642 +K + G + DN K + Q LEG+ Sbjct: 637 AAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKIL 696 Query: 643 ------MMQHAQNLEFEEAAQIRDQLHQLRELF 669 M+ + +++FE AA++RDQ+ +++ + Sbjct: 697 GALQDEMLAASASMDFERAAKLRDQIVEVQSVL 729 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/667 (53%), Positives = 477/667 (71%), Gaps = 8/667 (1%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L RRDV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L ++ Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNT-TSV 606 Query: 604 AKTKAKGRGK-----SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 A + + R K ++ V+ + +P+ + EL M + A +E+E+AA + Sbjct: 607 ADAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYL 666 Query: 659 RDQLHQL 665 RD++ +L Sbjct: 667 RDEIARL 673 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/665 (52%), Positives = 466/665 (70%), Gaps = 7/665 (1%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+V Sbjct: 2 KEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 ++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I +M Sbjct: 62 ISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRM 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 122 RLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ T Sbjct: 182 RNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELT 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+GY Sbjct: 241 VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 C GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L+ Sbjct: 301 CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI 360 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 ++GFRLP A DNRPLK EFEAL Q +++SATPG E +S +V+Q++RPTGLLDP Sbjct: 361 DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIRPTGLLDPC 419 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I+T Sbjct: 420 IEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIET 479 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IGRA Sbjct: 480 IERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRA 539 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Q Sbjct: 540 ARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQE 599 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ-HAQNLEFEEAAQIRDQ 661 + K A R + P++ + D+ A ++K+ + L M+ A+ L FEEAA IRD+ Sbjct: 600 VKKDAA--RVQVAPLLRAADA--DVRTHAARKKMVQALRLHMKVCARELRFEEAALIRDK 655 Query: 662 LHQLR 666 + QL+ Sbjct: 656 ILQLQ 660 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/717 (48%), Positives = 469/717 (65%), Gaps = 68/717 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+V++ Sbjct: 4 FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ ++++ L Sbjct: 64 HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + R Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + +T + Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG+C Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK LVE+ Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV------------ 412 GFRLPSALDNRPLKF EF Q +Y SATPG +EL D + Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423 Query: 413 ----------------VRPTGLLDPI---------------------------IEVRPVA 429 V P+ +P+ I +RP+ Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+EI+ Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++NG+ Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ Q K A+ Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRS-------EQGQLKLYAE 656 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 657 DDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/666 (51%), Positives = 464/666 (69%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P S D LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYS-DATLRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S VV+Q++RPTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHS-RRVVEQLIRPTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I DN LE LM + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMDN--------------EALEKLMWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 315/662 (47%), Positives = 450/662 (67%), Gaps = 11/662 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +++ +K G E D M + K + Q + + M Q A+ +FEEA +IRD Sbjct: 601 I-LSEDHSKYYG------EKDLSQMKHNKKFIDQMVRK----MTQLAKANKFEEAIEIRD 649 Query: 661 QL 662 L Sbjct: 650 YL 651 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 329/669 (49%), Positives = 433/669 (64%), Gaps = 23/669 (3%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ D LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA- 598 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + L+ Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHEDLSG 604 Query: 599 --LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 QN AK S QKI EL+ M + A+ E+E AA Sbjct: 605 HDYKQNAELYAAKA-----------------SKNEYNQKIKELKKKMEEAAKKREYEVAA 647 Query: 657 QIRDQLHQL 665 Q RD + +L Sbjct: 648 QYRDMIVEL 656 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/609 (46%), Positives = 388/609 (63%), Gaps = 29/609 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA-ILRRLAEL--QY 181 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + ++ Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 182 ARNDQAFQRGTFRVRGE------VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 +D F+RGT++ ++++P + +R+E V ++ D G +V Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEF--ASVGDGAVKD---GMVV 234 Query: 236 STIPRFT-----------IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 I T I+P H+VT +R+ QA I+EEL R + LL K +E Sbjct: 235 RAIQEGTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEAD 294 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESH 341 RL QR D+ MM E G+CSG ENYSR L+GR G PP TL DY+ D LL+VDESH Sbjct: 295 RLQQRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESH 354 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL 401 VT+PQ+ MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL Sbjct: 355 VTLPQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQEL 414 Query: 402 EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAED 461 K+ V+ ++RPT + DP IEVR Q+D+LL+E+R R +R LV TLTKR AED Sbjct: 415 GKAEYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAED 474 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 L+ YL EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L Sbjct: 475 LSSYLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVL 534 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 +AD EGFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN + Sbjct: 535 NADSEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQ 594 Query: 582 HGITPQGLN 590 + + N Sbjct: 595 NNCVMKSTN 603 >UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular organisms RepID=A9U6S5_PHYPA Length = 804 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/354 (66%), Positives = 276/354 (77%), Gaps = 3/354 (0%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 KLLE QRL QRT++D+EMM E+G+CSGIENYS L+ R G P TL DY P D L+VVD Sbjct: 24 KLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGATPYTLLDYFPDDMLIVVD 83 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ESHVT+PQI MY GDRARK LVE+GFRLPSALDNRPL FEEFE+ Q IYVSATPG Sbjct: 84 ESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEEFESKVNQIIYVSATPGP 143 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 YE+E +V+Q++RPTGLLDP+IEVRP Q+DDL+ EIR+R +ERVLVTTLTK+M Sbjct: 144 YEIEHCD-TMVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRERIDRDERVLVTTLTKKM 202 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 AEDLT+YL+E G +VRYLHSDI T+ERM I+RDLRLG F VL+GINLLREGLD+PEVSLV Sbjct: 203 AEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLIGINLLREGLDLPEVSLV 262 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 AILDADKEGFLRSERSLIQTIGRAARN G ++YGDKIT SM KAI ET+RRR Q Y Sbjct: 263 AILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESMDKAIKETQRRRTMQIAY 322 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKAL 632 NE+HGITPQ + KKV D++ +A++KA G P + V M + P+ L Sbjct: 323 NEQHGITPQTIRKKVRDVIE-ATKVAESKADPFGAC-PECDGLGVKMIVDPELL 374 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 261/610 (42%), Positives = 357/610 (58%), Gaps = 47/610 (7%) Query: 11 FKPSGDQPEAIRRLEEGLED-GLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ PNKTL Sbjct: 77 FEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVVVPNKTL 136 Query: 70 AAQLYGEMKEFFPENA-VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 AAQ+ E++ + E+ VE FVS++ Y PE+Y S+ + EK ++++ ++ +R AT+ Sbjct: 137 AAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDALRHRATR 194 Query: 129 AMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI------LRRLAELQY 181 A++E + VVVASVS +YGLG P Y+ L + +G I LR +L Y Sbjct: 195 ALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD--DLLY 252 Query: 182 AR--NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT----GQIV 235 R +RG ++ A DD + ++ +E S D G +V Sbjct: 253 ERVMPYMDIERGQYKTTA-------APDDDNCFTITIWPPYLE--SALDVRVRGDDGVVV 303 Query: 236 STIPR-------FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + R TI+P+ HY+TP ER+ +A+ IK EL + K L +E RL Q Sbjct: 304 ACEARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEADRLEQ 363 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP--------ADGLLVVDES 340 RT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV DES Sbjct: 364 RTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLVADES 423 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 HV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATPG+ E Sbjct: 424 HVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATPGDIE 483 Query: 401 LEKSGGD----VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 E GG +VD VVRP+G+LDP + V Q++ L + ++A I ER LV LTK Sbjct: 484 TEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVCVLTK 543 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+P VS Sbjct: 544 ADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDLPSVS 603 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 LVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR KQ Sbjct: 604 LVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRRVKQH 663 Query: 577 KYNEEHGITP 586 K+N ++ + P Sbjct: 664 KHNVDNNLVP 673 >UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=Lactococcus lactis RepID=O66085_9LACT Length = 455 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/285 (66%), Positives = 232/285 (81%), Gaps = 6/285 (2%) Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 QRL QRT +D+EM+ E+GYC+G+ENYSR + GR GEPP TL D+ P D ++++DESH+T Sbjct: 177 QRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMT 236 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + Q+ GMY GDRARKE L YGFRLPSALDNRPLK EEFE+ Q +YVSATPG+YE+E+ Sbjct: 237 MGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQ 296 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + +V+Q++RPTGLLDP++EVRP+ Q+DDL+ EI +RA NERV VTTLTK+M+EDLT Sbjct: 297 TD-TIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLT 355 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 Y +E G +V+Y+HSDI T+ER EIIRDLRLG FDVLVGINLLREG+D+PEVSLVAILDA Sbjct: 356 AYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDA 415 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 DKEGFLR+ER LIQTIGRAARN G ILY D MAKA+ E Sbjct: 416 DKEGFLRNERGLIQTIGRAARNSEGHVILYSD-----MAKALDEN 455 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 181/374 (48%), Positives = 231/374 (61%), Gaps = 27/374 (7%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 R T++P+ H++TP ER+ A I EL R L N +E +RL QRT D+ ++NE Sbjct: 353 RVTLWPRQHHITPPERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNE 412 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-------------------------GL 334 LG+C G E+YSR L GR GEPP TL DYL + L Sbjct: 413 LGWCPGAEHYSRHLGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWL 472 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 LV DESHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSA Sbjct: 473 LVADESHVMLPQLRAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSA 532 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 TPGN E E +VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV L Sbjct: 533 TPGNVENEWCQSRMVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCAL 592 Query: 455 TKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMP 513 TK EDL YL E G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P Sbjct: 593 TKADCEDLAGYLNEIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVP 652 Query: 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK-ITPSMAKAIGETERRR 572 +VSLVA+LDA GF+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRR Sbjct: 653 QVSLVAVLDAGVPGFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRR 712 Query: 573 EKQQKYNEEHGITP 586 EKQ+ +NE +GI P Sbjct: 713 EKQRDFNERNGIVP 726 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 103/160 (64%), Gaps = 6/160 (3%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDGLAH-QTLLGVTGSGKTFTIANVIADLQR--PTMV 62 L + F P+GDQP AI + L D A L G TG+GKTF +ANVI + R PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHL 161 +R AT+A++E +VVVVASVS +YG+G P Y+ L L Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVL 228 >UniRef50_C1N749 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N749_9CHLO Length = 1800 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 92/182 (50%), Positives = 122/182 (67%), Gaps = 2/182 (1%) Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G+LDP + V P A Q+ ++ +R+RAA E LV LTK EDL YL Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715 Query: 468 E-HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G R +LHS++ +R + ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDK-ITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSLIQ GRAARN G+ + D+ T +M +AI E +RRR KQ +N +HGIT Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835 Query: 586 PQ 587 P+ Sbjct: 836 PK 837 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 107/180 (59%), Gaps = 19/180 (10%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 R TI+P+ H++TP ER+ A E IK E+ AR L N +E RL QRT+ D+ ++ E Sbjct: 410 RVTIWPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLRE 469 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYL-------------------PADGLLVVDES 340 LG+C G E+YSR L GR G PP TL DY D LLV DES Sbjct: 470 LGWCPGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADES 529 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 HV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL F+EF P+ + VSATPG E Sbjct: 530 HVMLPQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATPGAIE 589 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 120/203 (59%), Gaps = 17/203 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLL-GVTGSGKTFTIANVIADLQRP--TMVLAPNK 67 F P+GDQP AI + D T L G TG+GKTF +ANVIA +P T+V+ PNK Sbjct: 118 FAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVVPNK 177 Query: 68 TLAAQLYGEMKEFFPEN-AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 TLAAQ+ E++ + ++ VE FVS++ Y PE+Y S ++EK ++V++ +E +R A Sbjct: 178 TLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALRHRA 235 Query: 127 TKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGM----IIDQRAILRRLAE-LQY 181 TKA+LE DVVVVASVS +YG+G P Y+ L G+ + Q A+ RRL E L Y Sbjct: 236 TKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARRLTESLLY 295 Query: 182 -----ARNDQAFQRGTFRVRGEV 199 AR D RG + +GE Sbjct: 296 EETKDARWD-GVSRGQWAWQGEA 317 >UniRef50_A4MZM2 Excinuclease ABC subunit B n=2 Tax=Gammaproteobacteria RepID=A4MZM2_HAEIN Length = 98 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 53/80 (66%), Positives = 60/80 (75%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 +KPF L+S F+PSGDQP+AI +L E L DGLAHQTLLGVTGSGKTFTIANVIA L RP M Sbjct: 7 TKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAM 66 Query: 62 VLAPNKTLAAQLYGEMKEFF 81 +LAPNK + FF Sbjct: 67 LLAPNKNPCCSALCRNERFF 86 >UniRef50_UPI0000D5304B excinuclease ABC subunit B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5304B Length = 172 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/140 (43%), Positives = 81/140 (57%), Gaps = 20/140 (14%) Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 RSE SLIQTIGRAARNV+GK ILY DK T S+ KAI ET+RRR Q YN++H I + Sbjct: 1 FRSETSLIQTIGRAARNVDGKVILYADKETKSIKKAIAETDRRRNIQLAYNKKHKIDAKS 60 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA---LQQKIHELEGLMMQ 645 + K++ DIL + E D V + L++ + L+ M + Sbjct: 61 VKKEISDILE-----------------SVYEKDYVKISEGSNVGGNLKKHLKALDKKMKE 103 Query: 646 HAQNLEFEEAAQIRDQLHQL 665 A NLEFEEAA+IRD++ +L Sbjct: 104 SASNLEFEEAAKIRDEIRKL 123 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 70/272 (25%), Positives = 138/272 (50%), Gaps = 9/272 (3%) Query: 101 YVPSSDT-FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMM 158 Y PS D F D NE ++Q R+ A A+++ + ++V ++ A+ L D +++ Sbjct: 84 YYPSRDILFYNADVHSNEIVKQ-RIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQ 142 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 + + +G +D +++ +L E Y R + G F +RG ++DIF + +++ +R+EL+D Sbjct: 143 IVIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIF-SPANNTPIRMELWD 201 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E++ + F P+T + + I R IYP + PRE++++A+ I++EL A VL E+ Sbjct: 202 TEIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESG 261 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 R+ + T D+E + +G+ ++ L +LFDYL + + Sbjct: 262 AKSAANRIKENTNEDIESI-----VNGLNIETQVLYAPFCDMETASLFDYLEYKKTIFIT 316 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + ++ ++ ++ +EYG LPS Sbjct: 317 DIKKCKDKLLRVFLEYEESVKSRLEYGHMLPS 348 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/322 (25%), Positives = 147/322 (45%), Gaps = 39/322 (12%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 GL +GL Q L G++GS ++ + + + +P ++ N A ++ ++ + +V Sbjct: 20 GLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSV 79 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 + P ++ + A + + RL + +VVA V+AI Sbjct: 80 LLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVAPVAAIR 126 Query: 147 GLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 + P +++ + + VG I+ + RL E+ Y R+D G F +RG +IDI+P Sbjct: 127 RMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGIIDIYPL 186 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S++ +R+ELFD EV+ + F+ + + T+ I P + E +AME+I Sbjct: 187 TSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAMEKIDS 245 Query: 266 ELAA--------RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 LAA ++K +L N +++RL++ Q D E++ L Y Sbjct: 246 GLAASLKKLKADKQKEILHANISHDKERLSE-GQTDQELVKYLSYFY------------- 291 Query: 318 PGEPPPTLFDYLPADGLLVVDE 339 E P +L DY P + LL++DE Sbjct: 292 --EKPASLLDYTPDNTLLILDE 311 >UniRef50_Q6QUN4 Excinuclease ABC subunit B (Fragment) n=1 Tax=Listonella anguillarum RepID=Q6QUN4_VIBAN Length = 110 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 55/110 (50%), Positives = 73/110 (66%), Gaps = 4/110 (3%) Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP---IVEPDNV 623 ET+RRREKQQ +NEE GITPQ L + V DI+ LG +I K+K + K P + E Sbjct: 2 ETDRRREKQQAHNEEQGITPQALKRNVKDIMELG-DITKSKQQRMNKQVPLSKVAESSQT 60 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 +P L+++I +LEGLM +HAQNLEFE AA+ RDQ+ +LR+ FI S Sbjct: 61 YEIFTPLQLEKEIAKLEGLMYKHAQNLEFELAAEKRDQIEKLRQQFITNS 110 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 107/518 (20%), Positives = 225/518 (43%), Gaps = 66/518 (12%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + G++ S +++ I V +P +++ + A +LY ++ + P+ V YF Sbjct: 32 VFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ--VYYF------- 82 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 P+ + +++ + RL + ML +++ V ++ + P +LY Sbjct: 83 ------PTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVESLASVYVPVELYK 136 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + ++VG +D + I +L + Y R + +RG F +RG ++DI+ S + RVE Sbjct: 137 NYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDIYSPISQE-PYRVE 195 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF +EVE + F+ + + + + I+ + RERI +IKE+LA+ + L Sbjct: 196 LFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSKIKEDLASIIEKLK 255 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 EN +++ T +LE + E I+++ + E + DY + + Sbjct: 256 ENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-----EHTSSFLDY-AKNYFV 309 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP---SALDNRPLKFEEFEALAPQTIYV 392 +VD+ ++ +Y + +E G LP L +R +EF + I Sbjct: 310 IVDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSELIDEFN--HREII-- 365 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-------LLSEIRQRAAI 445 ++D + + T +L P + V +++ L+ EI+ + + Sbjct: 366 ---------------ILDAIAKSTKILPPKLIVNFTQITLNNYQGKLELLIEEIKHKKSK 410 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + ++L+ + T+ E L + L ++G Y +++ +++ GE + G L Sbjct: 411 SFKILILSGTRARGERLVDTLRDNGIESSY----------RDVVNEIKPGEVVITFGNQL 460 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 +G + PE+ + I +DKE F +++R I+ + Sbjct: 461 --KGFEYPEIKISVI--SDKEVFGKAKRKNIRKTNKKG 494 >UniRef50_UPI0001854C73 excinuclease ABC subunit B n=1 Tax=Helicobacter pylori HPKX_438_CA4C1 RepID=UPI0001854C73 Length = 107 Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 51/94 (54%), Positives = 63/94 (67%) Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 LKF+EF Q ++VSATP ELE S +V +Q++RPTGLLDP EVR QV DL Sbjct: 1 LKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLF 60 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 EI+ A ERVL+TTLTK+MAE+L +Y E G Sbjct: 61 DEIKLVVARGERVLITTLTKKMAEELCKYYAEWG 94 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/350 (22%), Positives = 157/350 (44%), Gaps = 22/350 (6%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I+ +EE L+ G+T S K ++ + +V+AP++ A ++Y ++ F Sbjct: 12 IKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSF 71 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 NA + P + K + ++ + RL K + E VV Sbjct: 72 NFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVT 117 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 S+ A G P DL+ K +G+ ++ +++ L + Y R +G F VRG + Sbjct: 118 SIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEGKGQFSVRGGI 177 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 ID+F + +++ R+ELFD+E++ + FD +T + + I + I+P T ++ E I + Sbjct: 178 IDVF-SPTEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAGAEHIKKG 236 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + + L + + ++ + E +L Q+ + E+M E+ +EN + Sbjct: 237 ISAVSNYLNSYLSKIKKSKSGIAE-KLQQKFE---EIMEEITESKRVENIYELIDYF--Y 290 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 291 DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 119/521 (22%), Positives = 229/521 (43%), Gaps = 58/521 (11%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 T+ G + S K + L + +A N+ A +++ ++ FF ++AV Sbjct: 35 TVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVSFFFGKDAV--------- 85 Query: 96 YQPEAYVPSSDTFIEK-DASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDL 153 + PS + + +A + I + R++A ++ +V S A+ L D L Sbjct: 86 -----FFPSKEIMLHDVEAKSYDSIYE-RINALYRIVNDDYGFIVTSAEALCQKLIDRKL 139 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + + ++++ +G ID ++L + Y R + F VRG ++DIFP +D A+R Sbjct: 140 FKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVDIFPVNAD-TAVR 198 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +ELFD+EV+ + FD +T + V + TI P + P ME+I +L + K Sbjct: 199 IELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIMEKILNDLKIQIKK 258 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + N Q+L + D+E ++ Y +G++ Y ++ E P + DY+ ++ Sbjct: 259 MEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYII-----EKPSAVIDYIDSEI 313 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD---NRPLKFEEFEALAPQTI 390 L+ VDE +I + ++ +E G L + D + +++ + T+ Sbjct: 314 LVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYLWDKVKK-CKNTL 372 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 Y + P + E+ ++V +++ I+E +D+ + RA RV+ Sbjct: 373 YFTTLPSDDGQEEKRENIVSKLLNSYQGHLEILE--------EDISHWKKNRA----RVV 420 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + + TK E L E L DI+ V E RD++ GE V++ +L G Sbjct: 421 ILSGTKSRGEMLAETLRT---------KDIEAVYLEEPHRDIQPGE--VVITHGVLNRGF 469 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 + P + V + + KE F + +++ R ++ GK I Sbjct: 470 EYPGIGFVVV--SGKELFGQEKKT------RRHKSAKGKKI 502 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 20/172 (11%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 RV H ++ E I+ GE+D+LV ++ GLDMP V+ + + DADK G + Sbjct: 868 RVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQ- 926 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L Q GR R+ N A Y IT K + E +R + K E G G Sbjct: 927 ---LYQLRGRVGRS-NRLAYAY---ITYKKDKVLSEIAEKRLQAIKEFTEFG---SGFKI 976 Query: 592 KVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + D+ G N+ + G D+V DM K L + ++EL G+ Sbjct: 977 AMRDLQLRGAGNLLGPQQHGH--------IDSVGYDMYCKLLAEAVNELRGI 1020 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/368 (22%), Positives = 167/368 (45%), Gaps = 29/368 (7%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + N ++D +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVF-LMNAVSDESSVKLVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV-PSSDT-FIEKDASVNEHIEQMRLSA 126 A QLY +++ +Y + Y+ P+ D F D N I + R+ Sbjct: 63 RAEQLYSDLR----------------FYSRDVYMYPAKDILFFSADVHGNA-ITRKRMDV 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARND 185 + ++ +VA+V A++ Y+ K ++++ +D + ++L+ L Y + D Sbjct: 106 LRRLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVD 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 166 NVEEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYP 224 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V ++RI + + +I+ EL + L E+ R+ + E + E G Sbjct: 225 AGEIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYG 284 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +++Y + +L D LP D +++DE+ + G R+ +E G Sbjct: 285 VDSYVDYFYS-----DTVSLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGG 339 Query: 366 FRLPSALD 373 + LP ++ Sbjct: 340 YVLPGQMN 347 >UniRef50_A4TTM9 Excinuclease ABC, B subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TTM9_9PROT Length = 185 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 27/150 (18%) Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 ++ AARN++G+ ILY DK+T S+ AI ET RRREKQQ YN HGITP+G+ K V Sbjct: 34 AICWATSTAARNIDGRVILYADKMTDSLKYAIDETNRRREKQQAYNVAHGITPEGIKKAV 93 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI--------HELEGLMMQ 645 D+L + E D + +D L + ++E M Sbjct: 94 GDVL-----------------ESVYEKDYLTVDTGDSGLAHGVGHNLAAVKADIEKRMKA 136 Query: 646 HAQNLEFEEAAQIRDQLHQL--RELFIAAS 673 A +LEFEEAA++RD+L +L +EL + A+ Sbjct: 137 AAADLEFEEAARLRDELRRLEAQELGVPAA 166 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 108/454 (23%), Positives = 188/454 (41%), Gaps = 32/454 (7%) Query: 19 EAIRRLEEGLEDGLAHQTLL--GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 E ++ +G+ G Q L G+ G+ F N++ + + +++ + + Y + Sbjct: 11 EKTEKIMKGINQG---QNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYED 67 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + PE V + PE+ V + + A + I ++ T +++ Sbjct: 68 LIRMMPEEKVLLY--------PESEVLPHEQIVPDLAETAQRIRVLQSVIT----DKKPA 115 Query: 137 VVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V++ + +A+ P + K + L VG ID +L Y R + G F + Sbjct: 116 VLLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSI 175 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG +IDIFP S + R+ELF +E++ + F+P T + ++ + I P + + Sbjct: 176 RGGIIDIFPL-SVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQ 234 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I +A+ IK + L ENN E L ++ LE + E G E +FL Sbjct: 235 IKKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSE---QFLPY 291 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P TL DYLP D ++ D++ T +I G + + TL+E G LP+ N Sbjct: 292 YYP--ELHTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNF 349 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + + L S+T N EL S ++V T V P ++D Sbjct: 350 LSREALLDKLKDFNFVYSSTSINEEL--SWVKDFEKVSFTTR------SVEPYHGKLDLF 401 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 +R+ RV VT + A + YL+E+ Sbjct: 402 AERVRELVDTGYRVFVTLNSSNKARRVVNYLKEN 435 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 126/551 (22%), Positives = 214/551 (38%), Gaps = 60/551 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTF---TIANVIADLQRPTMVL 63 + KP PE I L GLE+ Q + G++GS ++ +A V A L P +V+ Sbjct: 1 MRGLLKPLQAVPEFIG-LIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPL--PVLVV 57 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 P + A Q+ E+ P AV+ F P + + ++ +E R Sbjct: 58 TPGEREACQMADEIAGLLPGAAVKLF-------------PVWQLLPFQIIAHSKEVEAQR 104 Query: 124 LSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 L ++++ VV+A A+ L P ++ + L L G + ++RRL + Y Sbjct: 105 LQVLESLVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYE 164 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I Sbjct: 165 RVGLVEGRGQFCLRGGILDVFPMTAHR-PVRIEFFDDEVDSIRRFNAATQRSEEKIDEVE 223 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 I + + +K+E A+ L + + ++L ++ F GY Sbjct: 224 IGAARELIVEDKAWENFRRALKKEYRAQALKLEKAGETGAARQLAEK--FAETAEGACGY 281 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 +GIEN+ + T+ DYLPA ++VD+ I + R L+ Sbjct: 282 FNGIENFLPYFY-----REVITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLL 336 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQ-----TIYVSATPGNYELEKSGGDVVDQVVRPTG 417 G LPS L + + + IY S P + VRP Sbjct: 337 SRGRVLPSQF----LAYAGWSDIQGGLSRHPVIYSSLLPRQPDF-----------VRPQQ 381 Query: 418 LLD-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 P + + L EIR ++ + A+ + L++HG Y Sbjct: 382 TFSLPWKAMPSFLGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYA 441 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 S V R G +VLV + L G ++P+ L + + D G R + Sbjct: 442 SSPEGHV---------RSG--NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRER 490 Query: 537 QTIGRAARNVN 547 + +GR A V+ Sbjct: 491 KRVGRMAPFVD 501 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 23/314 (7%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 GL G L G+ K +A ++ + P +V+ P A +L +++ F+P + Sbjct: 22 GLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIESFWPGEGI 80 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 +Y + E Y PS + + RL ++ R ++V V + Sbjct: 81 DYLPPS-ELLPLEVYTPSPE------------LAAQRLKVLTNLVSGRTRILVVPVEDLL 127 Query: 147 -GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 L PD + L VG IID+ A+L++L L Y R + G VRG +IDIFP Sbjct: 128 RKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPL 187 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 +++ +R+ELF +E++ L FDP++ + V+ + + P + P + + +E +K Sbjct: 188 GAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPAQEVLPPPD-LGPGLETLKA 245 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E ++ L + + L R Q + M+ + G F R TL Sbjct: 246 EF-SQTYATLRQRQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPR-----QATL 299 Query: 326 FDYLPADGLLVVDE 339 F+Y LLV+D+ Sbjct: 300 FEYFQRQPLLVLDD 313 >UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 Tax=Rhizobium etli 8C-3 RepID=UPI00019032C1 Length = 411 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 76/333 (22%), Positives = 149/333 (44%), Gaps = 38/333 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G P+ ++ LE+ + Q + G+ GS KT A + ++L PN A QL Sbjct: 8 GKDPQ-VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLA 66 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 +++ P++ + F P V S++ + E R++ A+ E++ Sbjct: 67 EDLQHVIPQDQIHLF--------PVDEVLSAEMAFSSPEARGE-----RVATLNALQEKK 113 Query: 135 DVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 + + V++++ L + +L+ L+ +G ID + R+L + Y R + + G F Sbjct: 114 AGIYLLPVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEF 173 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +IDI+P + +RVELFD E++ + F+ T + + + P + V Sbjct: 174 SIRGSIIDIYPL-TTTYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGP 232 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL------GYCSGI- 306 E + +E+++ K+LE++ + D E + + + +G+ Sbjct: 233 EDLEHGIEQMQ--------------KMLEKRLAATTEEADREFLQDYFGQLTSSWQAGVP 278 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++F S E T+ DY P++ LLVVD+ Sbjct: 279 TEEAKFYSDLLYQE-SVTILDYFPSNSLLVVDD 310 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 78/332 (23%), Positives = 154/332 (46%), Gaps = 26/332 (7%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +P + PE I L+ GL Q + G++ + K+F IA ++ +++ +++ + A Sbjct: 13 LQPLINTPEFID-LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEA 71 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A L ++K P+ V F P+ + + ++ I + R+ +++ Sbjct: 72 AGLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRMEVLESL 118 Query: 131 LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + V++A V A+ LG + L L VG + ++ L E Y R + Sbjct: 119 CRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVES 178 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG ++DI+P + +RVE FD+EV+ + +F+P T + + + I+P Sbjct: 179 HGQFSVRGGILDIYPITGIN-PVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREM 237 Query: 250 VTPRERIVQAMEEIKEELAARRKVL--LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V + +A + + +E RR+ L ++++L+ R + L+ +++ Y IE Sbjct: 238 VVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDN---LSRCEEVLDNISQAKYFDSIE 294 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 Y + + TL +Y+ A+ L++VDE Sbjct: 295 QYLPYFY-----DEDITLLNYIKAESLVLVDE 321 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 42/313 (13%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 LG+ S + + IA + + +R +VLAP K A L ++ +FF + D Sbjct: 28 CLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKTLCADL-DFFLQ----------DLK 76 Query: 97 QPEAYVPSSDTFIEKDA-------SVNEHIEQM--RLSATKAMLERRD-VVVVASVSAIY 146 QPE+ +P +E A ++ H E R+SA M D +VV + A+ Sbjct: 77 QPESALPGQGWILEFPAYHILPFKGISYHTETAANRISALSRMANSPDPAIVVTTPQAMA 136 Query: 147 GLGDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF-P 204 P L L + G +D+ A + +L Y +N + G F VRG ++D++ P Sbjct: 137 SRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEPGDFCVRGSIVDVYGP 196 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 S LR+E F +EV+ + F P T + + + I P T V ++R+ + ++ Sbjct: 197 PYSQ--PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAVVSKDRLQSVIHRVR 254 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 E+ + + ++++ + TQ QF GIE + L G G+ + Sbjct: 255 EKAVLADMPVTKIREVVDSLKATQ--QF-----------PGIEGFVPLLYENG-GD---S 297 Query: 325 LFDYLPADGLLVV 337 LFDYLPAD L V Sbjct: 298 LFDYLPADTLCTV 310 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 149/346 (43%), Gaps = 51/346 (14%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q + G++GS +T +A ++ Q+P + + + + +L ++ P + V F Sbjct: 33 QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLANLLPPDRVYQF----- 87 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDL 153 P + + A+ + + R+ A A+ +R VVV SV+ + + P+ Sbjct: 88 --------PVEEVLAAEVATSSPNYRLQRVQALDALDSQRPAVVVTSVAGLRRNVFAPEF 139 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + + L + VG +D ++L+ + Y + G F +RG +ID++ +D+ +R Sbjct: 140 FAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALNTDN-PVR 198 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-------RERIVQAMEEIKEE 266 ++LFD EV+ L FD T + V I P T + P + + Q +++K E Sbjct: 199 IDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKAE 258 Query: 267 LAARRKVLLE--NNKL------LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 L +L+ NN+ L+E+RL EM+ E G +S Sbjct: 259 LQDGDADILQQVNNRFTPLLTALQERRLPN------EML-EFGDLVYPTRHS-------- 303 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L DYL ADG L +D+ + G + D+ E V+Y Sbjct: 304 ------LLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKY 343 >UniRef50_Q4E9T4 Excinuclease ABC, B subunit n=2 Tax=Wolbachia endosymbiont of Drosophila ananassae RepID=Q4E9T4_9RICK Length = 130 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 27/132 (20%) Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 E SLIQTIGRAARN G+ ILY DKIT S+ +A+ ETERRR+KQ+++N H I P+ + K Sbjct: 23 ETSLIQTIGRAARNAEGRVILYADKITGSLDRALRETERRRKKQEEHNILHNIIPKTIIK 82 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPD-NVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + L + R I EP N D +L M++HA+NL Sbjct: 83 PISNTL---------------QERAIAEPKVNTNKD-----------DLRKQMIEHAENL 116 Query: 651 EFEEAAQIRDQL 662 EFEEAA+I+ L Sbjct: 117 EFEEAARIKKLL 128 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 109/442 (24%), Positives = 189/442 (42%), Gaps = 41/442 (9%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q + G++GS +A + RP ++ + A LY ++ + V Sbjct: 31 QMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQV-------- 82 Query: 95 YYQPEAYV-PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPD 152 Y PE V P + +D + NE R +AML ++ V + S+ SA L Sbjct: 83 YIYPEHQVYPFELAWQSRDVN-NE-----RAQVLQAMLSKKSAVYIFSLKSAKEKLSPAQ 136 Query: 153 LYLKMMLHLTVGM-IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + L+L VG + I +L L Y Q+G F RG +ID+FP S ++ Sbjct: 137 VVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVAS-ELP 195 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT-PRERIVQAMEEIKEELAAR 270 +R+E FD+E+E + FD T + + + P + V + QA+ ++ E + Sbjct: 196 VRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREFELQ 255 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE--NYSRFLSGRGPGEPPPTLFDY 328 + L+++ + L +R DL + +GI ++ R+LS P + T+ D+ Sbjct: 256 KGKLMKDGITDRSEELEERINRDLSSLE-----NGISLPHFHRYLSYFYP-KNYGTIIDF 309 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRAR-KETLVEYGFRLPSALDNRPLKFEEFEALAP 387 LP + L VDE + I + Y + E+L+E G LP N E+ + P Sbjct: 310 LPTNSLFWVDEPN-RIKESDEFYNNEITELAESLIEEGKILPGE-SNLFYSIEDVLSGNP 367 Query: 388 -QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN 446 TIY N+ L ++ + V Q + + + Q D L E++Q N Sbjct: 368 FDTIY----SANF-LRQNPFENVSQATNMS-----VKSMNQFYGQWDFFLKEMKQWMNNN 417 Query: 447 ERVLVTTLTKRMAEDLTEYLEE 468 R+++ + T A L E L++ Sbjct: 418 YRIILFSPTPESARTLYENLKK 439 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/324 (22%), Positives = 138/324 (42%), Gaps = 20/324 (6%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + L + G Q + G++ S +T +A + L P V+ + A ++ + Sbjct: 16 QTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHSIQQARRIAED 75 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ P+ V F P+++ + + + + RL + R V Sbjct: 76 LQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLAQRLDVLSRLARREPV 122 Query: 137 VVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VV ++ A+ L P + + L VG ++ I RL L Y R G + + Sbjct: 123 TVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTPMVEAPGQYSL 182 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D++P + + R+E FD+E++ + LFD T + R+ P + E Sbjct: 183 RGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGPAREMLLAAET 241 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + Q E+++E A R+ LL++ RL + LE ++E + G+E + F Sbjct: 242 LAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEGLEQFQNFFY- 300 Query: 316 RGPGEPPPTLFDYLPADGLLVVDE 339 P + +LF YL + ++ DE Sbjct: 301 --PDQ--VSLFSYLHPETIVFWDE 320 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 150/327 (45%), Gaps = 37/327 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 IR + L++ Q + G+TGS + + V +RP + + N A +LY ++ Sbjct: 14 IRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDL--- 70 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 +S D + Y P+ + + + + + R+ A +L + +V+ Sbjct: 71 ---------LSLMDVDRLFLY-PADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV 120 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+ + + P L+ + + G ID + ++L + Y + G F VRG + Sbjct: 121 PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI 180 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER---I 256 IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T + + I Sbjct: 181 IDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDI 239 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEE---QRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 V+ +E +K++L N+L E+ Q L + + DLEM+ SG++ F Sbjct: 240 VKRLE---------KKMMLTLNELKEQEDKQALIENLEEDLEMLR-----SGVKP-DMFF 284 Query: 314 SGRGPGEP-PPTLFDYLPADGLLVVDE 339 G P P +LFDYLP + +++DE Sbjct: 285 KYIGLAYPDPASLFDYLPKNTAILLDE 311 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 131/305 (42%), Gaps = 25/305 (8%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 L G+ + K+ + +++ ++ N+ A Q+Y ++K + + A+ Sbjct: 31 ALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAGDRAI--------- 81 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLY 154 ++PS + + + + ++ R+ A + +LE D +VV ++ L P Y Sbjct: 82 -----FLPSKEIMFYNMEATSRNAQEERMKAIETILEGSDCIVVTAIDTFLRLMPPPSAY 136 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 K + VG +D ++ L Y R D +RG F +RG++IDIFP+ S ++ +RV Sbjct: 137 TKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIIDIFPS-SAEMPVRV 195 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 ELF +E++ + F P T + + I +Y + + ++ ++ K L Sbjct: 196 ELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVILKLNQDYKNISKKL 255 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + K + L + E + LG G+E ++ E L Y + L Sbjct: 256 NQAAK----ENLKNSLEELSEKLRSLGNFRGVEKLLPYIY-----EKTTCLLHYFKDNAL 306 Query: 335 LVVDE 339 ++DE Sbjct: 307 FILDE 311 >UniRef50_D1ZW74 Whole genome shotgun sequence assembly, contig_840 n=1 Tax=Sordaria macrospora RepID=D1ZW74_SORMA Length = 140 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 10/111 (9%) Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G+ ILY D++T SM +AI ET+RRREKQ+ YNEEHGITP + +++ DI+A ++A Sbjct: 32 CRGRVILYADRMTGSMERAIAETDRRREKQRAYNEEHGITPTTIKRQIGDIIA---DVA- 87 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + VE D M L+ I LE M + A NLEFE A Sbjct: 88 ------SRDQVTVEIDEDRPHMVGHNLRSYIESLEKQMREAAANLEFETAG 132 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 19/321 (5%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 +++ L EGL+ +Q + G+ S +T +A + RP +++ P++T A ++Y +M Sbjct: 14 SLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLS 73 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 F + V F Y + S D + R++A K + ++VVV Sbjct: 74 VFKDEDVYLFPGKELLYYSNLFSESGDAAAQ------------RIAAMKRLARGDNIVVV 121 Query: 140 ASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+VSA+ P + + L I +L +L + Y R + +G VRG Sbjct: 122 ATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRGG 181 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DI+PA + R+E F E V+ + FDP + + + + P V Sbjct: 182 IVDIYPA-GEPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERKN 240 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A+ + +E A + L + + E +L +R +E + E Y G+E Y + + Sbjct: 241 ALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFYDQA- 299 Query: 319 GEPPPTLFDYLPADGLLVVDE 339 + DY P + LL +DE Sbjct: 300 ----AKITDYFPDNTLLFIDE 316 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 111/497 (22%), Positives = 202/497 (40%), Gaps = 55/497 (11%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLA-----PNKTLAAQLYGEMKEFFPENAVEYFVS 91 L+ VTG D Q+ M+ A NK + +GE K A E + Sbjct: 27 LISVTGC----------IDAQKSQMIYAFGGHRKNKLIVT--FGEQK------AKELYDE 68 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP 151 Y + + Y PS D + + R+ A KA+ E+ V +V + A+ P Sbjct: 69 YSFFDKEVVYYPSKDVLFYQSDIRGNLLTAERIRALKAIREQERVTLVTTFDALMNTMAP 128 Query: 152 -DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 + + +L L G ++D + I L + Y + Q G F VRG ++D+FP ++ Sbjct: 129 IEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQTMGQFSVRGGILDVFPLTEEN- 187 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 +R+EL+ +E++ + FD + + + I R +IYP V E ++++K E Sbjct: 188 PIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAELVLSDEEKAGGIDKLKAEAKRV 247 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL- 329 L + K E R+T E EL +G++ + + G + DY Sbjct: 248 SDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMDAFLSYFFDERVG-----ILDYFN 302 Query: 330 PADGLLVVDESHVTIPQIGGMYRGD--RARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 P+D L+ DE Q G + + + K+ L G+ LP ++ F E E +A Sbjct: 303 PSDSLIFFDELTRCTEQ-GKLTETEFSESMKQRLA-MGYILPGQMNGL---FTEKEIVAK 357 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 Y + + +G + Q + G+ V P + L+ ++++ Sbjct: 358 LGKYSCIALAALDNKANG---LHQ-LGSYGI--HCQSVSPYNNSFELLIKDLKRYKKNGY 411 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 RV++ + ++ A+ L+E + + G Y + D L E ++V +R Sbjct: 412 RVILLSGSRTRAKRLSEDITDQGITCFYTEN-----------YDHELFEGQIMVCYGKVR 460 Query: 508 EGLDMPEVSLVAILDAD 524 G + P + I ++D Sbjct: 461 RGFEYPILKFAVITESD 477 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/326 (21%), Positives = 147/326 (45%), Gaps = 33/326 (10%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTMVLAPNKTLAAQLYG 75 I ++ D + Q + GV + K A V L+ + ++L + A QL Sbjct: 15 IEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQLTS 74 Query: 76 EMKEFF-PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 +++ EN E Q E + + +DA ++ R+ A +A+L + Sbjct: 75 DLEALLEDENVFEM--------QSEESLATETAVASRDADLS------RVLALRALLSKE 120 Query: 135 DVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 + +VV +S + DP+ + + +L + Q + ++L E+ Y + G F Sbjct: 121 NSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEF 180 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + ++ P + ++ PR Sbjct: 181 SVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPR 239 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 ++++++ L K E+++LT+ LE Y + +S F Sbjct: 240 AEFSDGLKQLEQAFVD----YLNKLKGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFF 295 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDE 339 ++F+YL ++ L+++D+ Sbjct: 296 LKH-------SIFEYLQSEDLILIDD 314 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 4/232 (1%) Query: 85 AVEYFVSYYDYYQPEAYVPSSDT-FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 A E + + ++ + P+ D F D N Q R++ + ++E + VVV ++ Sbjct: 56 AKEIYDDFRNFTKQVWLYPAKDLLFYSADIHGNLMTRQ-RIAVLRHLMEDQGGVVVTTMD 114 Query: 144 AIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 + P YLK + + G +ID +RL + Y R Q G F +RG +IDI Sbjct: 115 GLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFSIRGGIIDI 174 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++++ + Sbjct: 175 FPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKKQLEAGTDR 233 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 234 LRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 116/507 (22%), Positives = 199/507 (39%), Gaps = 55/507 (10%) Query: 30 DGLAH---QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 GLA Q +LGV G + A + D P +++ P + AA L ++ P + Sbjct: 19 SGLARYKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGEREAAALADDLVTLLPGRGI 77 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 F ++ +P ++ V R+ +A++ + VV+A V A+ Sbjct: 78 FVFSAW-------ELLPVQVLAYSREIGVR------RMRVLEALITGTNPVVIAPVDALA 124 Query: 147 GLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 L P L+ + L G A+ RL + Y Q G F +RG + D+FP Sbjct: 125 RLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDTAGQFSIRGGIADLFPY 184 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + +RVE F +E+ L FDP T + + R T+ P T V + +E + Sbjct: 185 TAR-YPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATELVVEDDAWEAGIETLTR 243 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E + L + +RL + + L ++ + GIE+ + + TL Sbjct: 244 EYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDLLAYFYPQA-----ATL 298 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARK-ETLVEYGFRLPSALDNRPLKFEEFEA 384 DYL G++ V E + ++ + RA L+E G LP + + F A Sbjct: 299 MDYLGPAGVVAVTEPD-RVAEVAESFAQHRAHGYAVLLEQGRLLPGQFRLYLDREQLFAA 357 Query: 385 LAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 LAP +T+Y+S +S ++ +V G L + +L EIR+R Sbjct: 358 LAPFRTVYLSLFGRVGAFSRSDREIRFEVRELPGNLG----------RTGAVLGEIRRRQ 407 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF---DVL 500 +RV++ T A L L + G + + LG+ V Sbjct: 408 VAGQRVVLLVGTGERARRLLNSLRQSG---------------LAAFQAYELGQVQPGQVA 452 Query: 501 VGINLLREGLDMPEVSLVAILDADKEG 527 VG+ L +G ++ E L + + + G Sbjct: 453 VGVGRLNKGFEIAESQLAVLTEREIYG 479 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 144/341 (42%), Gaps = 41/341 (12%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A + + Sbjct: 10 GPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETF 69 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F V + P + ++D F ++ +E +R+ +L Sbjct: 70 QDLSLFLGSGKVLLY--------PPWDIQTTDMF-----ALQRDVELVRMEVLARLLTDE 116 Query: 135 DVVVVASVSAIYGLGDP----DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 V+VAS+ A+ P D YL++ L G + + ++ +L Y R + Sbjct: 117 PAVIVASLKALMQKVVPRSILDAYLEI---LAPGSEVPRDELVAKLVAGGYQRMTLVEDK 173 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 174 GEFSLRGHVLDIFPP-LEDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVI 232 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 ER +A++ I+ AA ++L E T F+ + L Y S Sbjct: 233 LSEERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFN-PLFLPLFYES------ 285 Query: 311 RFLSGRGPGEPPP-----------TLFDYLPADGLLVVDES 340 L+ P P T FDYLP + +V+D++ Sbjct: 286 --LAPTSPDSPTENATATQAVRLGTFFDYLPGNCFVVLDDA 324 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/325 (20%), Positives = 140/325 (43%), Gaps = 59/325 (18%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 E ++R+E+ E ++G + K+ I ++ + ++++PN+ +A + YG Sbjct: 18 ELVKRIEKNKE-----LNIIGSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFN 72 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML----ERR 134 N + YY P +P K+ E +LS ++ E + Sbjct: 73 SIGNRNIL--------YYPPSKNLPYGSINKSKET------EYSQLSVISKLINNDKEEK 118 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++++ S L +++ + ++ L G+ I+ + + +L L Y + + Q G++ Sbjct: 119 NIIITTERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWS 178 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 RGE+IDI+P ++++ +R+E FD ++++ +DP+T + + +I + I + RE Sbjct: 179 RRGEIIDIYPV-NNELPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIRE 237 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ LL + + + +T + D Y IE Y Sbjct: 238 KL----------------ELLSDEGVFNSEEITTKNNLD-------RYLGIIEEY----- 269 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDE 339 P L +Y+ D ++V+DE Sbjct: 270 -------PSNLINYINEDSIIVIDE 287 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 162/365 (44%), Gaps = 54/365 (14%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 +RL EG+ Q + G G+ +TF +A V L RP +V+ N+ +A ++ +++ F Sbjct: 15 FKRLLEGINKKRI-QLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFF 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR------ 134 + +F E ++ D +V E E L A++ L +R Sbjct: 74 LGDKTSRFFYR-------EGFL--------FDLTVREGGE---LKASRIELLKRLSRGEK 115 Query: 135 --DVVVVASVSAIYGLGDPDL--YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 VV +++ Y P L + + L VG +++ ++R L+++ Y R DQ Sbjct: 116 PHTVVNYEALTRKY----PPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAP 171 Query: 191 GTFRVRGEVIDIF-PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F RG ++D++ P E + R E F +E++ L D + + + + IYP Sbjct: 172 GQFSQRGGIVDVYVPGE---VPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVA 228 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN- 308 V + +++ ++I ++ + K L++ NK RL ++ E++N LG IE Sbjct: 229 VAEEDLLLEVKQKISADIEQQVKKLIQQNKREAAGRLKEKGA---EVLNILGKSEVIEKL 285 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY---G 365 F SG +L DY + L+ +DE QI + ++ R+E+ E G Sbjct: 286 LPYFWSG-------VSLLDYFGDEYLVFLDEPGRFGEQINSL---EKLRRESFTEALSGG 335 Query: 366 FRLPS 370 + LP Sbjct: 336 YTLPK 340 >UniRef50_C7S707 UvrB (Fragment) n=1 Tax=Stenotrophomonas sp. LMG 6608 RepID=C7S707_9GAMM Length = 60 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 VID+FPAESD LR+EL + EVE+++LF+PLTG+ + + RFT+YPKTHY + R++ Sbjct: 1 VIDVFPAESDSEPLRIELLEGEVEKITLFEPLTGETLRNMQRFTVYPKTHYASTARRVL 59 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/297 (23%), Positives = 131/297 (44%), Gaps = 29/297 (9%) Query: 50 ANVIADLQRPT-----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 +N+I L + T +++ ++ A ++ +MK + + AV Y P+ Sbjct: 39 SNIIETLSKGTSKRHRVIITYDEIRAGEIQTDMK-LYDKKAVIY--------------PA 83 Query: 105 SDT-FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MMLHLT 162 D F D N I RL K ++E + ++ S+ A P Y+K ++ L+ Sbjct: 84 KDIMFFAADVHGNAIISG-RLEVLKRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLS 142 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 V D + RRL+EL Y + Q +G F VRG++ DIFP +++ R+E + +E++ Sbjct: 143 VRDSFDITELARRLSELGYEKTSQVSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEID 201 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + FD + + + + +YP T + ER + ++++ +E K K E Sbjct: 202 TIRAFDVESQRSIENVEELLVYPATEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEE 261 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 R+ + + + G GI++Y + + T FDY + + +DE Sbjct: 262 AARINSVVEEFKDNLEIYGGSFGIDSYINYFF-----DETETFFDYFNEEDIFFIDE 313 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G RV + H ++ E I+ + GE DVLV ++ GLD+ V+ + I DADK G Sbjct: 863 GARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGL- 921 Query: 530 RSERSLIQTIGRAARN 545 L Q GR R+ Sbjct: 922 ---SQLYQLRGRVGRS 934 >UniRef50_Q1ZIM6 Excinuclease ABC subunit B n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZIM6_9GAMM Length = 109 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 4/113 (3%) Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 M KAI T +RRE Q +YN ++ I PQGLNK V DIL LG+ K KG + + + Sbjct: 1 MQKAIHITTQRRELQHQYNIDNNIVPQGLNKAVDDILQLGKRSPKKSRKG---TSELWKK 57 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + P+ + K L +++ LE M HA++LEFE+AAQ+RD++ +L+ I S Sbjct: 58 EATPV-ANEKTLLKQMVRLEKQMFVHAKDLEFEKAAQLRDEISELQAQLILIS 109 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 26/334 (7%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 E ++++E ++D + L G+T K + + + +++A N+ A++Y + Sbjct: 12 EQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK-RAEIYLDSI 69 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 EN F PS D S++ R+ + + + +V Sbjct: 70 NGIIENKAYLF-------------PSLDINFYNIKSIDNRKLSQRMEVLTKLAKGENFIV 116 Query: 139 VASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 + ++ A+ L D + K + + IID + L L Y N +G F RG Sbjct: 117 ITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLVENKGDFAKRG 176 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +ID +P D+ +R+ELFD+EV+ + LFD + + + I I P T + ++ Sbjct: 177 SIIDFWPVSYDN-PVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVTELIYSKDDYD 235 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + ++ I E+ + L ++K + Q+L + + + E + S I+ L Sbjct: 236 KVIKNINREIMS----LDNDSKEINRQKLIDKYKQITAFIEESMFVSNID-----LVNPY 286 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + + DY+P GL+ D+ I Y Sbjct: 287 RKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFY 320 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 36/316 (11%) Query: 26 EGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF-PEN 84 + LE G H L G+ GS +A+++A R +VL P++ A + E+ F P + Sbjct: 18 DALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFASPSH 77 Query: 85 AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV--VVASV 142 A F ++ P S T D S RL A R VV V A++ Sbjct: 78 APLSFPAW-------DMAPFSATSPHPDISGARLDTLFRLQNGLA----RAVVMPVAAAL 126 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 + G G L+ + +L G ++ +L RL ++ YA RGTF VRG ++DI Sbjct: 127 QRVLGRG---LFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGILDI 183 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP +R+E F + E + FDPLT + + + + P RE I+ + Sbjct: 184 FPPNL-SAPVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPS------REIIL--TDG 234 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + ++A R K ++ ++ +R + LE + Y G+E L PG Sbjct: 235 VLADIAPRLKGCCDDLEIPANRR-----REILENLKSAVYFRGVEYLQPLLH---PGL-- 284 Query: 323 PTLFDYLPADGLLVVD 338 T+FDY P L ++D Sbjct: 285 ETIFDYAPDASLALLD 300 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 121/240 (50%), Gaps = 24/240 (10%) Query: 142 VSAIYGLGD----PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V+ I G+ D D + + +++L G I+D + ++L + + R +G F +RG Sbjct: 138 VTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQFAIRG 197 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDIF + +D+ +R+EL+D+E++ + FD + + + +T++P T ++ + I Sbjct: 198 GIIDIF-SYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTEDEIE 256 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG--YCSGIE--NYSRFL 313 Q +E+I+ E + K+ + + +RT+ +E N L + + +YS+F+ Sbjct: 257 QGIEKIRHEKDEQMKLFGADKR--------KRTKEQIEAGNHLNRMFDDALRTGDYSKFI 308 Query: 314 SGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGM--YRGDRARKETLVEYGFRLPS 370 + +L +Y P D L+VVDE V + + M Y + K L E G+ LPS Sbjct: 309 --YTFADRVSSLAEYFPKGDTLIVVDEP-VRLKEHSDMTFYEYSESMKNRL-ESGYVLPS 364 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 34/311 (10%) Query: 51 NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY--FVSYYDYYQPEAY------- 101 N++ L+ L TL +Q M E +A + V+Y D E Y Sbjct: 13 NLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTYDDTRAKEIYDDLRSFT 72 Query: 102 -----VPSSDT-FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL 155 P+ D F D N Q R++ + ++E R+ VVV ++ GL D L L Sbjct: 73 SRVWLYPAKDLLFYSADIHGNLMARQ-RIAVLRRLMEDREGVVVTTMD---GLMDHLLPL 128 Query: 156 KMMLHLTV----GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 K + ++ G +ID RL + Y R Q G F +RG ++DIFP ++++ Sbjct: 129 KYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQFSIRGGIVDIFPL-TEEVP 187 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 +R+EL+D+EV+ + FD + + V + TIYP V +++ + +++E Sbjct: 188 VRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAEVVLSADQLAAGIRRLEKEEKTYE 247 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL--FDYL 329 K L E +K E R+ ++E G++ Y R+ P T+ +Y Sbjct: 248 KALREQHKPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIRYFC-------PDTVSFLEYF 300 Query: 330 P-ADGLLVVDE 339 P + ++ +DE Sbjct: 301 PQGESVIFLDE 311 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 16/231 (6%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q +LG++GS K + L + +++ P A Q Y E+ E++ E+ V F Sbjct: 27 QLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLF----- 81 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD-L 153 P ++ + V+ + R+ + + +V+ +S I L P L Sbjct: 82 --------PVEESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAAL 133 Query: 154 YLKMMLHLTVGMIIDQR-AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 + K + L +G I+ A + RL EL Y R + G F +RG ++DI+P + + L Sbjct: 134 WKKSSIELAMGSEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLDQ-EYPL 192 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 R++ FD EV+ + F+ T + + I I P T +E + +A +I Sbjct: 193 RLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKI 243 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 16/251 (6%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F + D P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELS----------FFTGGDEQLPVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAM-LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 RL + RR ++VV + + L L L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP S D+ R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGS-DLPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHY 249 + + P + Sbjct: 244 EKIQLLPAKEF 254 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 2/152 (1%) Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDL 153 Y P Y P DT S I Q R++ ++ + +++ +V+A+ L + D Sbjct: 74 YNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDD 133 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 K+ +HL VG +D + L +L Y + ++GT VRG ++D+F E ++ +R Sbjct: 134 LKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNN-PIR 192 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 +ELFD+E+E + LF+ G+ ++ IYP Sbjct: 193 IELFDDEIESIRLFNIEDGRSFKSVENIIIYP 224 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 133/290 (45%), Gaps = 36/290 (12%) Query: 51 NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIE 110 ++ DL R + + + A ++Y ++ F+ E+ VEY + + D Y F Sbjct: 45 SIFNDLSRQMIFITSSDLEAKKVYEDL-SFYMEDKVEY-LGFQDIY-----------FYH 91 Query: 111 KDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQ 169 DA + + E +L + + +++V S+ A+ P + L + H VG +D Sbjct: 92 LDAK-DRNEEAKKLKVLLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDL 150 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 + +L L Y R + G F +RG +ID+F E + +R+ELFD+E++ + FD Sbjct: 151 EKLTEKLVSLGYERVSKIEGFGQFSIRGGIIDVFSLEYTN-PIRMELFDDEIDSIRTFDV 209 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + + +F+I P ++ P E+ A+ ++K+E + + Sbjct: 210 YSQKSIDKLQQFSITPSREFIYP-EKTTDALVKLKKETT---------------KNTDEG 253 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 T +++ ++ Y G ENY ++ E ++F YL D ++ +++ Sbjct: 254 TFQNIDYISSKTYFEGAENYIDYIY----PEENKSIFTYLADDAIVFIND 299 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/335 (22%), Positives = 148/335 (44%), Gaps = 38/335 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A + V +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEAD---ISVLDAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L ++ + E + P+ PS + + N +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEEP---------GFLPD---PSLLPYQRAVSDRNSSLEKMRLAGIL 114 Query: 129 AMLERRD---VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 R ++V A + + P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 115 GGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQES 174 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI Sbjct: 175 IVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTI-- 231 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 +P + + ++++ R +LL +N E ++ D+ +NE G Sbjct: 232 -----SPASELFHLGQLTRKDINNRLDILLTDNLNPE---FSRTLSADINHLNE-----G 278 Query: 306 IE-NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ Y F + P ++ DYLP+D L+V+DE Sbjct: 279 LKPEYPEFFA---PLFNTSSILDYLPSDALVVLDE 310 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 117/238 (49%), Gaps = 19/238 (7%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLL-GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 DQ +++ ++G +TLL G++G+ K+ +AN ++ +++ ++ A +LY Sbjct: 8 DQNWQLQKWQQGFSK--RERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELY 65 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 E+ E V F S + Y E + S D RL A +L+ R Sbjct: 66 DELSTLLGEEKVFQFFSDDNIY-AEFALASKDRI------------AYRLEALNFLLDER 112 Query: 135 --DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 +VV ++ L P+ +L+ L LT G D ++ L++ Y + + G Sbjct: 113 ATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGE 172 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 F +RG+++DI+P ++++ +R+E F +EV+ + FD + + ++++ R IYP + ++ Sbjct: 173 FSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFI 229 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 20/213 (9%) Query: 37 LLGVTGSGKTFTIANVI-ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + G++GS K+F ++ A L +P +++ +K ++ F P V F Sbjct: 30 IYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFMPNAPVLSF------ 83 Query: 96 YQPEAYVPSSD--TFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDL 153 P++D F S+ QMR A A E VV+A+ + Sbjct: 84 -------PTTDHVDFTTVARSLEVQGAQMRALALLAWQE--PAVVIANAEEVTQYVVSPH 134 Query: 154 YLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 YLK LH + I++ L +L + Y R DQ QRG F VRG+++DI+P SD + Sbjct: 135 YLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDILDIYPVNSDH-PI 193 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 R+E F +E++ L F + + I +T+ P Sbjct: 194 RIEFFGDEIDTLRFFSVENQRSIEQIESYTVTP 226 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 17/212 (8%) Query: 37 LLGVTGSGKTFTIANVIADLQ--RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 L G+TGS K + + +Q +P ++L N+ E+ F+P+ A+ Sbjct: 31 LTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMR------- 83 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDL 153 E Y P+S + D NE + R +A + ++ + ++ A+ +AI L P+ Sbjct: 84 ----ELY-PASLIHGQVDTR-NEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPES 137 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 ++ L L VG I+Q ++ +L + Y R +Q G VRG+++D+FP D ++R Sbjct: 138 LVRENLKLAVGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKD-SVR 196 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 +E FD ++ + FD T + + TI + I P Sbjct: 197 IEWFDNTIDAMKRFDLDTQRSIGTISQVGIMP 228 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 21/213 (9%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L GV I ++ LQ+P +++A ++ A Q+Y + E F EN V +F Sbjct: 28 LTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEENMVHFF------- 80 Query: 97 QPEAYVPSSDTFIEKDASVNEHIE-QMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLY 154 + +E A+V+ E RL A +L ++ +V+++ A+ Y L + Sbjct: 81 -------PVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAAIKF 133 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA--L 212 L L V + + I L Y R+D G F +RG+++DI+P +IA Sbjct: 134 KANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPI---NIAYPY 190 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 R+E FD+E++ + F+ ++ + ++ I P Sbjct: 191 RIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEP 223 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 14/197 (7%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 TL G+ GS + +A ++ +RP +V+AP+ AA++ E++ FF + Sbjct: 24 TLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELR-FFSGRPFDVL------ 76 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL 155 P+ D + S + + RL+ + +++R+ VV + A+ P L Sbjct: 77 -----SFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTML 131 Query: 156 -KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L+ G ++ L +L L Y RGTF VRG ++DIFP + +R+ Sbjct: 132 DNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQ-PVRI 190 Query: 215 ELFDEEVERLSLFDPLT 231 E F + VE + FDPL+ Sbjct: 191 EFFGDFVETIRAFDPLS 207 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 29/246 (11%) Query: 103 PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHL 161 P DT S+++ RL ++ + + V + +AI L D + K + + Sbjct: 80 PDLDTNFYNIKSIDDKKINQRLECLISLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVII 139 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 IID + L+ L Y D +RG F RG +IDI+P +D +R+ELFD+EV Sbjct: 140 DEESIIDVDDFINSLSALNYNSTDFVEERGDFAKRGSIIDIWPINYED-PVRIELFDDEV 198 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLL 281 + + +FD T + + I I P + + + ++ I ++ + + N K Sbjct: 199 DSIRIFDKNTQRTIKKIKNVEIGPANELLYDSDDYKKVIKAISNDIDKKE---VTNTK-- 253 Query: 282 EEQRLTQRTQFDLEMMNELGYCSG--------IENYSRFLSGRGPGEPPPTLFDYLPADG 333 +Q+L + + + +++ Y + ENYS F+ DYLPA Sbjct: 254 -DQKLVDKYKQIISFLDQKMYVANKDLINAYRTENYSSFI-------------DYLPAGT 299 Query: 334 LLVVDE 339 + + D+ Sbjct: 300 IFIFDD 305 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 114/265 (43%), Gaps = 34/265 (12%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 +L+ G EDG LGV S + F +A A +PT+V+ + A + + Sbjct: 22 KLDAG-EDGT-----LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLG 75 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 + V F DY P PS + + R+ A A+ R+VVVVAS Sbjct: 76 DERVMRFPERSDY--PFVPKPSDPAQVAR-----------RMEAVHALASGREVVVVASA 122 Query: 143 SAIYGLGDP---DLYLKMMLHLT---VGMIIDQRAILRRLAELQYARNDQAFQR------ 190 A+ P D+++ + L M Q A + + +A ++ ++ Sbjct: 123 RALVRALPPAGSDVHVPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDG 182 Query: 191 -GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 GTF VRG ID+FP +R++ F +E+E + P TGQ + +P +IYP + Sbjct: 183 PGTFAVRGGTIDVFPGNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEF 241 Query: 250 VTPRERIVQAMEEIKEELAARRKVL 274 + + +A +++ E AA VL Sbjct: 242 SCSKRGLARARQKL-ERPAATNPVL 265 Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%) Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-----DDLLSEIRQRAA 444 + +SATP ++ S V D + +L P E RPV V D + IR+ A Sbjct: 769 LTLSATPIPRTMQMSLSGVRDMSL----ILTPPDERRPVEVHVGEWDPDVVSGAIRRELA 824 Query: 445 INERVL-VTTLTKRMAEDLTEYLEEHGE-RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V V+ + M E + GE RV H + + ++ D GE DVLV Sbjct: 825 RGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDVLVA 884 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ G+D P + + I D+ + G + + Q GR R+ Sbjct: 885 TTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGRVGRSCT 925 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 31/278 (11%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 T ++ + T A +L EM F P+ F P+ DTF ++E + Sbjct: 40 TAIITSDATTAQRLMDEMAFFAPDLRYALF--------PDWETLPYDTFSPHQDLISERL 91 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + + + DVV+V + +A+Y L P V +D+ + +L Sbjct: 92 ATLWRISQRDKDTGADVVIVPATTALYRLAPPSFLAGYTFEFKVKQKLDESRLKAQLTLA 151 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ Q G + VRG +ID+FP S + RV+LFD+E++ + FDP + + + +P Sbjct: 152 GYSHVTQVVGPGEYAVRGGLIDLFPMGS-LVPFRVDLFDDEIDSIRTFDPDSQRSLYPVP 210 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + P + ++ + + R + LL+ + +++ +M N Sbjct: 211 EVRLLPGREF--PMD------DDARAKFRKRWRELLDGDP--------TKSRIYKDMGNG 254 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + SGIE Y + T+FDYL +D +V+ Sbjct: 255 VA-TSGIEYYLPLFF-----DETATVFDYLGSDATVVL 286 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 16/227 (7%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q + G+ GS +T IA+++ + QR + + LY + + +D Sbjct: 26 QLVTGLNGSAETLFIASLLHEQQRSLVYVTDT------LYHASQLVDDLANLLDDDELFD 79 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDL 153 + P + + A+ + R+ A +A+ R VVVV S+S + L P Sbjct: 80 F-------PVEELLAAEVATSSPEYRSARIDALRALQSDRPVVVVTSLSGLRRFLPTPAN 132 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + ++VG D A+ ++L + YA G F VRG +IDI+P + D +R Sbjct: 133 FAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAVRGSIIDIYPLAA-DYPIR 191 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TPRERIVQA 259 ++ FD EV+ L FDP T + + + P T ++ T ER A Sbjct: 192 IDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADERATGA 238 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 35/306 (11%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 L G+ +G+ A + DL R ++ P + A ++K AV Sbjct: 26 ALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEATHFADDLKALGLTAAV--------- 76 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLY 154 P D + E RLS A+ R V A+ P D + Sbjct: 77 ------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVCVPAEALLQYTVPRDEF 130 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L+ L L GM+ ++ A++ RL Y R Q G F VRG+++DI+ + A RV Sbjct: 131 LRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMHQPA-RV 189 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL-AARRKV 273 E +D+E++ L+ FD LT + ++ + + P RE + + E E L A +K Sbjct: 190 EYWDDEIDSLASFDLLTQRRDGSLEKIYLSPA------REVLFGSTAETAEALRGAIKKA 243 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + +E+ Q D +M E ++ R P P TL D+L + Sbjct: 244 RGKKRTAMEKATEADLAQLDSGLMP--------EAMDKYYGIRYP--QPATLLDHLDSP- 292 Query: 334 LLVVDE 339 + V+DE Sbjct: 293 IFVLDE 298 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 26/189 (13%) Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ + PE+AV F S+ + E P SDT + + SV ++ + T + Sbjct: 151 LVAALRAYLPEDAVADFPSW-ETLPHELLSPRSDT-VGRRLSVLRRLKHGGMGTTGPLR- 207 Query: 133 RRDVVVVASVSAIY-----GLGDPDLYLKMMLHLTVGMIIDQRA----ILRRLAELQYAR 183 +VVA V A+ GL D + V + I QRA ++RRLA+ YAR Sbjct: 208 ----IVVAPVRAVVQPIVQGLADLE---------PVELSIGQRAPFDQVIRRLADAAYAR 254 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 D RG F VRG +ID+FP +D +R+E F +E+E + F + +++I Sbjct: 255 VDMVTHRGEFAVRGGIIDVFP-PTDPHPVRIEFFGDELESMRWFAVADQRTLTSISGTIE 313 Query: 244 YPKTHYVTP 252 +PK + P Sbjct: 314 HPKALFAPP 322 >UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Streptococcus suis 98HAH33 RepID=A4VYI1_STRS2 Length = 320 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 41/325 (12%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I + + GL Q LLG++G+ K+ +A L M++ + A +L ++ Sbjct: 13 INQWQSGLNQS-TRQLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADLTAI 71 Query: 81 F-PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VV 138 EN +F + D+ I + ++ Q R+ + + + ++ Sbjct: 72 IGSENVYNFF--------------TDDSPIAEFVFASKERTQSRIDSLNFLTDSTSSGIL 117 Query: 139 VASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 VAS+ A L P+ Y + L VG I+ +++ L + Y + + +G F RG Sbjct: 118 VASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQRG 177 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +++DIF +S + R+E F +E++ + +FD + + + + +I P + + E Sbjct: 178 DILDIFDMQS-ETPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSEDYS 236 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF---DLEMMNELGYCSGIENYSRFLS 314 +A + I + A + L E L E +T++ DL +FLS Sbjct: 237 RASQYI--QTAIEQSTLEEQQSYLREVLADMQTEYRHPDLR---------------KFLS 279 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDE 339 E TL DYLP L +D+ Sbjct: 280 --CIYEQSWTLLDYLPKSSPLFLDD 302 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 125/309 (40%), Gaps = 46/309 (14%) Query: 38 LGVTGSGKTFTIANV----IADLQR----PTMVLAPNKTLA-AQLYGEMKEFFPENAVEY 88 + + G T+++ N+ +A +++ P + + + +A A Y E+ FF E Sbjct: 16 ISLKGQTSTWSLNNISESALALIEKAQNAPGLAVLLTENMAEANKYSELLRFFAET---- 71 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 DY P P +T S ++ I RL + + +++ VS + Sbjct: 72 -----DY--PILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLIQK 124 Query: 149 GDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 P ++ K L G +D A R+L Y R Q + G F VRG +ID++P S Sbjct: 125 VVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGS 184 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 185 -RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHF 243 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY-SRFLSGRGPGEPPPTLF 326 + N++L + Q G+E Y S F S T F Sbjct: 244 GDDAR----NSQLYRSVKDGQT-------------VDGLEYYLSLFHSNIA------TFF 280 Query: 327 DYLPADGLL 335 DYLP+D L Sbjct: 281 DYLPSDCLF 289 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 13/192 (6%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L G++GS K F ++ ++ R + L P + A L +++ F + F++ Y+ Sbjct: 23 LTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRLFMFLARDFYF 82 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK 156 E S + + S+ ++ R SA +++ S IY L P + Sbjct: 83 AKENL---STLEVGRILSLQHCLDHPRQSA---------IIIATPGSFIYPLPAPSAMRE 130 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L L G +QR IL++L Y R D ++G F VRG +IDIFP + RVE Sbjct: 131 SSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLGHKE-PCRVEF 189 Query: 217 FDEEVERLSLFD 228 F E +E + FD Sbjct: 190 FGELIESIHRFD 201 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 27/227 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDG-LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAP 65 LN+A D+P R E E G A Q + + + FT+A +A +R + + Sbjct: 10 LNAAL----DEPGLARVRELAAEGGPTAEQVHVTAPAAARPFTVA-ALAQAERTVLAVTA 64 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 +L + P+ +V ++ ++ + E P SDT ++ A ++ RL+ Sbjct: 65 TSREGEELTQSLAGLLPDGSVAFYPAW-ETLPHERLSPRSDTVGKRLALLH------RLA 117 Query: 126 ATKAMLERRDVVVVASVSAIY-----GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + R VVVA V ++ GLGD LK + L VG D + L++L Sbjct: 118 HPQGAPLR---VVVAPVRSLLQPQLKGLGD----LKP-VRLAVGESTDLSDLAAELSDLA 169 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 YAR D +RG F VRG ++DIFP +D+ RVE F +E+E + F Sbjct: 170 YARVDLVEKRGEFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSF 215 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 129/308 (41%), Gaps = 46/308 (14%) Query: 35 QTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE---NAVEYFV 90 Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F + N ++ Sbjct: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD 150 YD + P + SS RLS + + V++ V+ + Sbjct: 76 LPYDSFSPHQDIISS-----------------RLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 Query: 151 PDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 P +L L + G + + A+ +L Y DQ + G + RG ++D+FP S + Sbjct: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS-E 177 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + R++ FD+E++ L +FD + + + + + P + T + I + ++ Sbjct: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS-RFLSGRGPGEPPPTLFDY 328 +R E Q ++ L +GIE + F S EP P LF Y Sbjct: 238 KRD---------PEHIYQQVSKGTLP--------AGIEYWQPLFFS-----EPLPPLFSY 275 Query: 329 LPADGLLV 336 PA+ LLV Sbjct: 276 FPANTLLV 283 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 17/212 (8%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 ++++++ L+ G Q + G++G+ +F +A + MV+ P++ A L E+K Sbjct: 13 SVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPA-GMVIVPDEETALTLAAELKL 70 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 + E E FV ++P + F + + + + RL + A+ R+ VVV Sbjct: 71 LWGE---EVFV----------FLPR-EIFGLGPSLPSAFVPRQRLLSLAALARRQGVVVA 116 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 + + + GL P+ + L G + + +RL E Y R G F RG + Sbjct: 117 TAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGI 176 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 +D FP S + +RVE +E+ R++ FDP + Sbjct: 177 VDFFPP-SSPLPVRVEFDGDEIARIATFDPAS 207 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 136/320 (42%), Gaps = 35/320 (10%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 + + L GV I +A + +P +++ N+ A + + ++ ++ +E FV Sbjct: 23 IKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELFVL 82 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGD 150 + A V S D R+ +L R VV+A+ + Y L Sbjct: 83 DGNLATQTA-VSSPDEL------------SSRIQCLNLLLSGRPGVVIATPQGLQYPLSA 129 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P L+ K H VG I + + L + Y R + + G F +RG+++D++P + + Sbjct: 130 PALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES- 188 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 LR+E F +E++ + FD + + + +P T+ + +V E + +A E+ +L Sbjct: 189 PLRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKE 248 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 LE + Q + ++ ++ C+ +Y LS +L DYLP Sbjct: 249 AAASLE---------IAQEALANGQLPDD---CNRYLDY--LLS------KSFSLLDYLP 288 Query: 331 ADGLLVVDESHVTIPQIGGM 350 A GLL+ ++ + + M Sbjct: 289 AKGLLLFNDWQLIAESVKNM 308 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R+ Y H + + +I+ EFD+LV ++ G+DMP V+ + I DAD G L Sbjct: 845 RIAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYG-LSQ 903 Query: 532 ERSLIQTIGRAAR 544 L IGR+AR Sbjct: 904 LYQLRGRIGRSAR 916 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 70/129 (54%), Gaps = 5/129 (3%) Query: 123 RLSATKAMLERRD---VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 R+ +A+ E++ V V+ ++ A G+ PD K +H+T +D + + L Sbjct: 100 RMEVLRAIAEKKKEEPVTVITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTA 159 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 L Y R Q G F VRG +ID+FP ++++ +R+EL+ +E++ + +FD + + + I Sbjct: 160 LGYERESQIEAPGQFAVRGGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENI 218 Query: 239 PRFTIYPKT 247 TIYP + Sbjct: 219 SEITIYPAS 227 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ T TKR +E++ E L++ + YLH D+ +R I+ DLR G+FD++V ++ Sbjct: 328 AIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDVAAR 387 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 GLD+P ++ V D R + IGR+ R Sbjct: 388 GLDLPNITHVFNYD-----LPRQVEDYVHRIGRSGR 418 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/479 (19%), Positives = 210/479 (43%), Gaps = 59/479 (12%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L GV+ + K + + +RP + + + A + Y + + E + Y+ Sbjct: 27 LHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILYY------- 79 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK 156 P P + FI+ S + + R++ K + ++V S++A G L+ Sbjct: 80 -PAK--PITHEFID---SHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEKG---LFWG 130 Query: 157 MMLHLTVGM--IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 +T I+D + L + YAR + +G + V+G ++D+F D++ +R+ Sbjct: 131 KDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIM-GDEVPVRI 189 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E FD+E++ + FD TG+ + I +FT+ P + + I + ++++ +L K + Sbjct: 190 EFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKL---EKAI 246 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 +N E++ + + + E+ ++ + F + + +L D L D L Sbjct: 247 TQN----EDEEIDKNYR---ELYEKIADDTNDTTKYIFYASK----QTKSLID-LYKDPL 294 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL---APQTIY 391 ++ D+ + ++ ++ + L E+G L ++N KF E E IY Sbjct: 295 IIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNH-FKFAEAEERFINLDSLIY 353 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 ++L + ++ + + D I V+ + +D++++ +++ + +V++ Sbjct: 354 -------FDLSMASNNLFCKDIVEVKSSDNINYVKNINYLIDNIVTYLKE----DYKVII 402 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 T ++ ++L+E+L + + Y H TV+ + L + ++ G+N+L E L Sbjct: 403 TYKNEKEKKNLSEFLSNYN--IDYTH----TVKEGHV----ALVKSNIRNGVNILSEKL 451 >UniRef50_A3WDE5 Possible helicase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDE5_9SPHN Length = 1031 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 9/125 (7%) Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTV 483 R +A L+E RQ+ R++V K AE+L + E ER+ +HS T Sbjct: 288 RAIADAAMRRLAEDRQKGWDRHRMMVRASGKNEAEELFKLYSEWFPNERIVLVHSG--TT 345 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R II D++ G +D++V +++L+EG D P++ + A+ K S L+Q IGR A Sbjct: 346 NRKSIISDIKAGMYDIIVCVDMLKEGFDFPDLKIAAVHSVHK-----SLSVLLQFIGRFA 400 Query: 544 RNVNG 548 R +G Sbjct: 401 RTQDG 405 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 36/289 (12%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 R ++++A A +++ ++ + EN + + P +DT + S + Sbjct: 56 HRSSLLIAATPDAAVRMHADLTAWLGENVMLF--------------PPTDTLPYEHMSAD 101 Query: 117 EHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRR 175 I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 102 IGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLLAH 161 Query: 176 LAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 162 WVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQRSD 220 Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKE-ELAA-RRKVLLENNKLLEEQRLTQRTQFD 293 + + I P + P R +A++ I++ ++A+ RR+V E E QR + Sbjct: 221 KRVRQIQISPA--HEIPFWRRTEAIKRIEQLQIASLRREVQHEWATAREHLETGQRFE-- 276 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPT-LFDYLPADGLLVVDESH 341 G Y+ F R P E L+ +LPA ++++ E H Sbjct: 277 -----------GRAFYAPFF--RTPHEAAEAGLWQHLPASAIILLSEEH 312 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 95/229 (41%), Gaps = 22/229 (9%) Query: 25 EEGLEDGLAHQT-------LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 ++ L+ LA T + G+TG+ K+ +A R T ++ + +QL ++ Sbjct: 11 DKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDL 70 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV 137 P P +P+ D + + + RL +L V+ Sbjct: 71 ATLLPA-------------APVLELPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVI 117 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+A+ AI P + + + L G I+ +L L Y R DQ G F R Sbjct: 118 VLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSAR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G +IDIFP + LR+ELF +E++ L FDP T + + + + I P Sbjct: 178 GGIIDIFPL-NRPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMP 225 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 23/230 (10%) Query: 19 EAIRRLEEG--LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 +AIRRL+ G LE + G S + +A +IA++ P +++ A ++ Sbjct: 21 DAIRRLKPGRVLE-------IEGPPTSARLAILAALIAEVSHPVLIVTDRLDSAEEVTAG 73 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + E+ P++ P + P S+T + V+ + +R+ + R V Sbjct: 74 LAEYLPDD-----------RDPTLW-PVSETLPYELLPVDRSVSALRVELLARLARREPV 121 Query: 137 VVVASVSAIYGLGDPDLYLKMM-LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +VA A+ L P + HL VG + A + L + Y G Sbjct: 122 PIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQAPGQVGR 181 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 182 RGGIIDVFPPVGDH-ALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILP 230 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 33/263 (12%) Query: 44 GKTFTIANVIADLQR-------PTMVLAPNKTLAAQLYGEMKE----FFP-----ENAVE 87 K+ I ++ A L R P+ V + L A L+ EM P +N + Sbjct: 11 SKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRPEEAQNVAD 70 Query: 88 YFVSY-YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML--ERRDVVVVASVSA 144 +Y +D + + D E+ AS + RLSA + +L +R +++VASV + Sbjct: 71 SLSTYLWDPKRVLLWPAHDDLPYERIASPTQDSPFRRLSALERILRTDREPLLIVASVKS 130 Query: 145 IYGLGDPDLYLKMML----HLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 I +P L + + G +D A+ R+AEL Y+ + G F RG + Sbjct: 131 IL---EPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSPVASVEEVGQFSRRGGIF 187 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI-----YPKTHYVTPRER 255 DI+ S D+ +R+ELF +EVE + LFDP T + I F+I P Y + ER Sbjct: 188 DIW-TPSSDLPIRLELFGDEVESIRLFDPETQRSTREIESFSIISPYEIPVAEYESALER 246 Query: 256 IVQA-MEEIKEELAARRKVLLEN 277 + Q + ++ E+ + K LE Sbjct: 247 LQQIDLSNLRHEVTSSWKQSLEK 269 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 128/309 (41%), Gaps = 39/309 (12%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 G++G+ K IA + ++ +V+ N A +L ++ +F ++ + Y Y Sbjct: 31 GLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVEDSEI------YKY--- 81 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKM 157 P D E+ ++ + R+ A+ + + + ++ + P D++ Sbjct: 82 ----PMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVPLNGLKKWLTPVDMWKSH 137 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L VG ID L +L + Y R G F +RG ++DI+P + R+E F Sbjct: 138 QLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIGKPV--RIEFF 195 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT-------PRERIVQAMEEIKEELAAR 270 D EV+ + FD + + I I + Y+ + ++ QA E+ + ++ Sbjct: 196 DTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYEDTRPKI--E 253 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + V E + E +L + FD +++ L F+ E P T+ DY Sbjct: 254 KSVRNELKETYESFQLFEAEMFDHQVLRRL---------VAFMY-----EQPATIMDYFK 299 Query: 331 ADGLLVVDE 339 D ++ VDE Sbjct: 300 EDAIIAVDE 308 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 14/189 (7%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V + + F A ++ + ++ PN ++ E+ ++FP+ F D E Sbjct: 35 VVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPDA---LFFPEIDRAPVE 91 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMML 159 +P ++ E+ V RL++ K R VVV+ S + P ++ + Sbjct: 92 GALPDPESIAERLGIVQ------RLTSVKG----RQVVVLTRASLDDEVPSPAALKQLEI 141 Query: 160 HLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDE 219 L +D+ +L++LAE Y Q RG F VRG ++D+F + +R+ELFD+ Sbjct: 142 RLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFHH-SLPVRIELFDD 200 Query: 220 EVERLSLFD 228 E++ L FD Sbjct: 201 EIDSLREFD 209 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 68/307 (22%), Positives = 139/307 (45%), Gaps = 32/307 (10%) Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 R+L + Y R + G F RG ++DIF S+ +R++ FD+E++ + +FD +T + Sbjct: 145 RKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLSEK-PIRLDFFDDELDSMRIFDEITQR 203 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + I IYP + + E +E + +L ++ EN Q ++ + Sbjct: 204 SLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKLDDKKIQKDEN-----YQEISTYLKEK 258 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 +E+ G S +E++S + E ++ DYL D ++ D H + +I G+ R Sbjct: 259 VEIYRATGDFSDLESFSNLIY-----ENTYSIADYLNDDTIVFYDNYHKILEKIEGL-RE 312 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + + +DN + FE+ + L + Y+S N D+++ Sbjct: 313 YFLTSLQEMNRSYIYQDVIDN--IAFEKIQNLDIRKYYLSTLKLN-----------DKII 359 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 LD II++ +++ + L EIR++ N +V+++ T++ + + + L ++ Sbjct: 360 EKNYNLD-IIDLAYYSSE-EYLAKEIREKITDNYKVIISLNTQKQKDYVEKVLFDN---- 413 Query: 474 RYLHSDI 480 Y + DI Sbjct: 414 -YFYDDI 419 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%) Query: 123 RLSATKAMLERRD---VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 R+ K + E+++ V V+ + A GL + + + + G +ID + + L Sbjct: 100 RMEVLKKLTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVH 159 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 L Y R Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + Sbjct: 160 LGYERESQIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENM 218 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEE 266 + IYP T V +E+ V E +E Sbjct: 219 EKVVIYPATENVEKKEQAVSFSEYFPKE 246 >UniRef50_Q4FSS4 Possible ATP-dependent DEAD/DEAH box RNA-helicase n=5 Tax=Proteobacteria RepID=Q4FSS4_PSYA2 Length = 567 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E++++ TKR E L + L+E G + +LH D+ +R I++DLR G+ +LV ++ Sbjct: 285 EQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVA 344 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 GLD+P +S V D R + IGR R Sbjct: 345 ARGLDVPALSHVINYD-----LPRQTEDYVHRIGRCGR 377 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 32/281 (11%) Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ N+ A +L + PE V+YF V S+ AS +E + Sbjct: 51 IIIEENENKAQRLVDNLAPILPEEKVQYFA-----------VDSTLATQRATASPDELAQ 99 Query: 121 QMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 R+ A +L +VV + + Y L D Y++ + VG D + + + L Sbjct: 100 --RIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELNKWLVAS 157 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIA-LRVELFDEEVERLSLFDPLTGQIVSTI 238 Y + + G F VRG+++DI+P D ++ +R+E F +EV+ + FD T + + Sbjct: 158 GYRKEALVAKPGEFAVRGDILDIYPL--DQVSPIRIEFFGDEVDTIKSFDVNTQKSILEK 215 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + P + + + +A IK+E+ E Q LE+++ Sbjct: 216 EEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNFLEVLD 262 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 EL + +NY+ + P +L YLP +GL+V ++ Sbjct: 263 ELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFND 301 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 26/255 (10%) Query: 38 LGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQ 97 L ++ S + +A + + RP +++ + A + + + +AV + + DY Sbjct: 31 LSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAAWLGNDAVLRYPNRKDY-- 88 Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP---DLY 154 P SD A+ ++ I R A + V+VVAS A+ P + Sbjct: 89 -----PWSD------ATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPVGSGYF 137 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L TVG + + L + YA + GTF + G+ +DIFPA++ +R+ Sbjct: 138 LPATF--TVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDTVDIFPAQATS-PVRI 194 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 E F +E++R+ TGQ + I T+ P +E I +A +E L R + Sbjct: 195 EFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEAIRRA----EEALYTRAQ-- 248 Query: 275 LENNKLLEEQRLTQR 289 EN+ + + L QR Sbjct: 249 -ENSAIAADLELIQR 262 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 17/189 (8%) Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVE---YFVSYYDYYQPEAYVPSSDTFIEKDASVNE 117 +++AP+ A LY + + +A + Y+ S ++ + Y P D E+ Sbjct: 31 LIVAPDAVWAQYLYDNLMFWLKNSAWQQTLYYFSDWETLPYDHYTPHPDLVSER------ 84 Query: 118 HIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRL 176 +R+ A L + +V+ S SA P +L K +H VG I Q+ ++ RL Sbjct: 85 ----IRVLAELPTLTQG--IVITSTSAFRQRLCPQTHLDKFGIHCAVGDHIAQKTVINRL 138 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 + Y ++G + RG ++D+FP + +R+E D+E++ + FD T + Sbjct: 139 LQAGYQSTHFISEKGEYATRGNIVDLFPMAA-QTPIRLEWLDDEIDSIRFFDLKTQLTLK 197 Query: 237 TIPRFTIYP 245 + +I P Sbjct: 198 KCQQLSILP 206 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 145/336 (43%), Gaps = 32/336 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAPNKT 68 AF + E +R L L DG A +LG K I + A L R +V+ ++ Sbjct: 7 AFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR--LVVTRDEK 64 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT-FIEKDASVNEHIEQMRLSAT 127 A QL E+ EFF EN Y P+ D F + D N Q R+ A Sbjct: 65 RARQLAEEL-EFFTENVF--------------YYPAKDLLFYQSDIRSNVLTRQ-RMQAV 108 Query: 128 KAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 +A+ + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 109 EALRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVAR 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST---IPRFTI 243 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + +S + I Sbjct: 169 VEHPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRI 227 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P V E + + +E I+ + E+ K E R+ +E + E G+ Sbjct: 228 VPSAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDV-EGGFG 286 Query: 304 S-GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 S +E++ + + + +L DY+P DG++ +D Sbjct: 287 SQQVESHLTYFT-----DQTLSLIDYIPEDGVIFLD 317 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/303 (22%), Positives = 137/303 (45%), Gaps = 41/303 (13%) Query: 24 LEEGLEDGLAHQTLLGVT-GSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + + L+D + + G T G F+ A + L + +++A N+ A + Y ++ P Sbjct: 17 ISDALKDSKSPIAVYGTTEGFCGIFSYA-LFRKLNKKLLIIAENRLSARKYYEDLFNISP 75 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFI-EKDASVNEHIEQMRLSATKAMLERRDVVVVAS 141 + Y P D F+ ++D+ ++++ + +K + + D++V Sbjct: 76 LRVLLY--------------PEKDIFLYDRDSKSRDNLKTRLGTISKILTDDWDIIV--- 118 Query: 142 VSAIYGLGDP----DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 + + LGD D++LK L L ID +++ +L ++ Y R Q G F +RG Sbjct: 119 -TTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEGMGQFSIRG 177 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI SD+ R+ELFD E++ + F+ + + + I I+P + + + Sbjct: 178 NIIDI-ATFSDN--YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDILISEDDRL 234 Query: 258 QAMEEIKEELAARR-----------KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 A ++I+ E+ + K L N+L+E++ + Q + +NE SGI Sbjct: 235 NAAKKIENEINKTKLSGERKDRLFEKFSLYKNRLVEDEYI-QNPDLIIPFLNE-DKLSGI 292 Query: 307 ENY 309 ++ Sbjct: 293 IDF 295 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 15/230 (6%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q + +TGS K A +I +P +++ ++ LA + +++ + P V YF S + Sbjct: 47 QMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSS-E 104 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY 154 + E S +T IE+ +N RL+ + + VVV +++ + Sbjct: 105 WLPFEVLGKSRETTIERIRVLN------RLAQ-----DNQCTVVVPALAVNQRSFSRRRW 153 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 + +L L G D + + ++L+ Y R D +G F +RG ++DI P + + LRV Sbjct: 154 QEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAPLDGE--PLRV 211 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 E FD+EV+ + +FD T + T+ I P V E + + E++ Sbjct: 212 EFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVR 261 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%) Query: 99 EAYV-PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKM 157 +AYV P +T + S ++ I R++ M ++ +++++ + + + P + Sbjct: 112 DAYVFPDWETLTYDELSPHQDIVSERINLLTDM-PKQGILLISIQTLMQRMAPPSWLIGQ 170 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L+VG I D LA Y D F+ G F VRG VIDIF A LR++LF Sbjct: 171 HFDLSVGDIFDINQQREMLAAAGYRAVDNVFEPGEFAVRGSVIDIF-AMGQPFPLRLDLF 229 Query: 218 DEEVERLSLFDPLTGQIVST 237 D E+E + F+P T + +ST Sbjct: 230 DNEIETIRFFNPQTQRTLST 249 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 133/315 (42%), Gaps = 23/315 (7%) Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ N A ++Y ++K + N Y Y + S+D I +A V E Sbjct: 53 LVITYNDIKAKEIYEDLK-LYDRNV-------YLYPAKDIIFYSAD--IHGNAIVRE--- 99 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAEL 179 R+ K +LER+ + VVA++ P YL ++ + I+ + +L L Sbjct: 100 --RMRILKNLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHL 157 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y R Q G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + Sbjct: 158 GYERQGQVENPGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVS 216 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 IYP + + E + + ++ E L K E R+ Q + E + Sbjct: 217 TAVIYPASEIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLEC 276 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARK 358 L +++Y RF + + FDY D ++ DE + + ++ Sbjct: 277 LQGSLNLDSYIRFFYDK-----TCSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESM 331 Query: 359 ETLVEYGFRLPSALD 373 +E G+ LPS +D Sbjct: 332 VGRIEKGYILPSQMD 346 >UniRef50_Q045P7 Superfamily II DNA and RNA helicase n=23 Tax=Lactobacillales RepID=Q045P7_LACGA Length = 464 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 6/103 (5%) Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 LV TK+ ++LT YLEE G +V +H I ER IIR +R G++ +V +L G Sbjct: 254 LVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARG 313 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAI 551 +D+P VSLV + K+ +I IGR RN + G AI Sbjct: 314 IDVPGVSLVVNYEIPKD-----LEFVIHRIGRTGRNGLEGHAI 351 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 18/196 (9%) Query: 40 VTGSGKTFTIANVIA-DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 V+ S + F +A + D RP +V+A + A L +M+ + V ++ Sbjct: 27 VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFY--------- 77 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD--PDLYLK 156 PS E + H+ +R++A A++ R V + L + P+ L+ Sbjct: 78 ----PSRGVAYESHLAPPAHLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNPALR 133 Query: 157 -MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 L VG ++D L Y R DQ RG F +RG ++D++PA ++D A+RV+ Sbjct: 134 PHGFTLRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRVD 192 Query: 216 LFDEEVERLSLFDPLT 231 LF +E+E L F T Sbjct: 193 LFGDEIESLRWFSTFT 208 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 99/417 (23%), Positives = 168/417 (40%), Gaps = 58/417 (13%) Query: 136 VVVVASVSAIYGLGDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V S+ A+ P L + L + G D+ ++ L L Y + G F Sbjct: 102 TIIVTSIEALLRRVIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFA 161 Query: 195 VRGEVIDIFP-------AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 VRG +IDI+P + + LR++ F + VE L FDP++ + + + P Sbjct: 162 VRGGIIDIYPPAFALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTR 221 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 ++ ++++EI L R N +L TQ LE +N +GIE Sbjct: 222 DFIIDTS-AKKSLQEIGTALQTRADKYSWNEEL---------TQTMLEKINTGQGIAGIE 271 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + FL PG+ +LFD+L D +V+ +S + Y+ R + L G Sbjct: 272 S---FLPLFFPGKNLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQ--RIEQNYLEVQGAG 326 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK----SGGDVVDQVVRPT------- 416 P AL P+ I++S +L D+V + T Sbjct: 327 TP--------------ALPPKEIFLSPEEIKEKLSSFRQVRLSDIVSEQDNATSYNTQSH 372 Query: 417 GLLDPIIEVRPVATQV-DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 GLL I R + L+ IRQ R+++ +++ ++L E LE H Sbjct: 373 GLLKQEIARRRAKEGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAEMLERH------ 426 Query: 476 LHSDIDTVERMEIIRDL--RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 H +I V + DL R + ++L+ + L EG +PE I +++ G +R Sbjct: 427 -HFNISVVPSPLSLPDLQKRAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQMR 482 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 R+ ++L+ RR V+ V A + P L+ ++ + +G +I++ ++ +L +L Y Sbjct: 136 RMRGLASLLDGRRSAVIATVVEAAQKIISPSGILENLMTIHMGEVIEREILVGKLVKLGY 195 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R DQ + G F VRG+++DIF A ++ RVE FD+EV+ + +F+ T + + Sbjct: 196 ERVDQVERCGHFSVRGDIVDIF-AINESHPFRVEFFDDEVDGIRVFNEDTQRSIDIRDDI 254 Query: 242 TIYP 245 +I P Sbjct: 255 SILP 258 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY--GLGDPDLYL 155 P +P DTF K A+ ++ R+ ++ ++V+A A G+G + + Sbjct: 78 PIVELPEVDTFDVKAAAKSQERAARRMEVLGRLVRGEHIIVLARTEAAVQKGMGRNE-FK 136 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 ++ L L +G ++ + +L RL +L Y ++ + G F VRG ++DIF A + + +RVE Sbjct: 137 RLSLTLRMGEVLPREELLERLVDLGYEHAEEVERVGQFSVRGGIVDIF-AINAAVPVRVE 195 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 FD+E++ L FD T + + TI P Sbjct: 196 YFDDEIDSLREFDLDTKRSTKNVGAATIMP 225 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 24/200 (12%) Query: 39 GVTGSGKTFTIANVIAD--LQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSY--- 92 G GS IA +A Q P + V+ N A +L E++ F P+ V + Sbjct: 85 GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRVLPDWETL 144 Query: 93 -YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP 151 YD + P D E+ A++++ E R D+++V + +A+Y + Sbjct: 145 PYDTFSPH-----QDLVSERLATLHDLGEG-----------RCDILLVPATTALYRMPPA 188 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 T G +D+ + +L Y Q + G + VRG +ID+FP S + Sbjct: 189 SFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGS-PLP 247 Query: 212 LRVELFDEEVERLSLFDPLT 231 R++LFD++V+ + FDP T Sbjct: 248 YRIDLFDDQVDSIRAFDPDT 267 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%) Query: 136 VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +++ + + L P + + L L G +++RL E+ Y R+ A +G F + Sbjct: 113 IIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAI 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 RG +IDIFP S D R+E + +++E + +FDP+ + + T+ I P Sbjct: 173 RGGIIDIFPVASPD-PFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEITP 221 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 40/278 (14%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 ++P ++ N+ A+ LY E+K ENA + ++ + + EA V S Sbjct: 44 KKPLFIIKENEQQASNLYNEIKHL-DENANVVYYNHEESLRVEAIVQS------------ 90 Query: 117 EHIEQMRLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRR 175 E ++ R+ A ++ D+ + +++++ L ++ ++++ G + + R Sbjct: 91 EIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASIINIKTGDEWEPLQLARE 150 Query: 176 LAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 L L Y R + T+ +RG V D+F + + LR+E FD EV+ L FD + + Sbjct: 151 LERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQ-PLRIEFFDVEVDSLRYFDIENQRSL 209 Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE----QRLTQRTQ 291 S + TI T + I +EI L ++ + +ENN L+ E + L Q Q Sbjct: 210 SRVEEATIAFATDILLKENDI----QEISNALTSKIEG-IENNDLIHEMEQKRELLQMNQ 264 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 FD+ + L + S NY+ T++DYL Sbjct: 265 FDVTLYPLLSFWS---NYA-------------TIYDYL 286 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 86/191 (45%), Gaps = 41/191 (21%) Query: 167 IDQRAIL----RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 + QR IL +RL Y Q G F VRG ++D++P +D + LR+EL DEE++ Sbjct: 139 VGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLDEEID 197 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + FDP + + ++ + + P E+ + A +VL+ Sbjct: 198 SIRTFDPESQRSLNQVDVIHMLPG--------------REVPLDPAVLERVLV------- 236 Query: 283 EQRLTQRTQFDLEMMNELGY--------CSGIENYSR--FLSGRGPGEPPPTLFDYLPAD 332 RL +R FDL+ Y SGIE Y F SGRG TLFDYL AD Sbjct: 237 --RLRER--FDLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSAD 292 Query: 333 GLLVVDESHVT 343 LLV+ V+ Sbjct: 293 -LLVLTAPGVS 302 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/290 (20%), Positives = 125/290 (43%), Gaps = 32/290 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++ +P +V+ + A L + + EN E+F PS + S Sbjct: 48 NINKPLVVVVEDNMRARNLTEYLNDI-EENICEFF-------------PSRELNFYNAKS 93 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAIL 173 ++++ E R++ +L ++V + A+ + + K + +I+ + Sbjct: 94 LDDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQ 153 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 +L L+Y R D +G F +RG ++DIFP S +R+ELFD+E++ + F+ T + Sbjct: 154 EKLRALKYERVDTIESKGQFAIRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQR 212 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR--RKVLLENNKLLEE--QRLTQR 289 + I + + + + I++ L R + EN +++ ++L + Sbjct: 213 SIEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEY 272 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 + DLE +L C FL+ + T+FDY D ++++++ Sbjct: 273 IRSDLEYEIDLVSC--------FLTKKDYD----TVFDYFADDTIMMIED 310 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 16/145 (11%) Query: 104 SSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTV 163 S D+F+ + H L+A ML VA+ A+ P + K L L Sbjct: 47 SGDSFLRRG-----HTLSGWLNAKSGML-------VATPGALV---TPFRFGKTGLTLAA 91 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G + + + LAE Y R + +Q G F VRG ++D F S+ LRVE FDE+VE Sbjct: 92 GKRLGRDTLTSWLAENGYRRAELVWQPGEFAVRGALVDFFDP-SEKAPLRVEFFDEDVES 150 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTH 248 + F P + + +P F + H Sbjct: 151 IRFFQPRSQRSFQNLPHFIVRSVNH 175 >UniRef50_UPI0000D54D15 excinuclease ABC subunit B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54D15 Length = 76 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 6/70 (8%) Query: 609 KGRGKSRPIVEPDNVP-----MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 K RG V D + M M+P AL +K+ ELE +M +HA+NLEFE+AA +RDQ+ Sbjct: 7 KARGARENKVTNDRIAFAQDVMSMTPAALSRKLAELENMMAEHAKNLEFEQAAAVRDQIA 66 Query: 664 QLREL-FIAA 672 +L+++ F+ A Sbjct: 67 ELKQIAFVGA 76 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 37/315 (11%) Query: 28 LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENA-- 85 LE G GV F ++ + L P +V+ + A + + + F P +A Sbjct: 17 LETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTEDARFFQPADARA 76 Query: 86 -VEYFVSYYDY-YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 V F SY Y+P AY + + E I Q+ ++ + V+V+A + Sbjct: 77 EVALFPSYTVMPYRPVAY---------HNRTAAERI-QLLYGMSEGLAPA--VLVLAVDA 124 Query: 144 AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF 203 + P + ++ G +D A+ +L Y R + G F +RG ++D+F Sbjct: 125 LLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLF 184 Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 + A R++LF + VE + F P+T + T+ P V ++RI + + + Sbjct: 185 SPFHEAPA-RIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAV 243 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFD-LEMMNELGYCSGIENYSRFLSGRGPGEPP 322 K+ A + + +++ R+ Q T + +E + L Y E P Sbjct: 244 KKRSAELNLPVSVSRDIID--RMEQGTDTEGMESLMPLVY-----------------ETP 284 Query: 323 PTLFDYLPADGLLVV 337 TLFDYLP LLV+ Sbjct: 285 ATLFDYLPGKTLLVM 299 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 14/216 (6%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L GV GSG + A + A +V+ P++ A E++ + P+ Sbjct: 18 LTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFYLPKGKRRVI------- 70 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGLGDPDLYL 155 Y P + K S + R++A +L RR+ ++V V + P L Sbjct: 71 ----YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIVTHVDTLLLKMIPRKRL 126 Query: 156 KMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L + ID+ ++ RL Y R + G + VRG ++D+F + S +R+ Sbjct: 127 ADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGGILDVF-SPSATFPVRI 185 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 ELF + VE L F P+T + + I I P V Sbjct: 186 ELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAV 221 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 15/191 (7%) Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 L P +V+ ++ AA+L ++ + A F P+SD + + Sbjct: 51 LPSPVLVITESEASAAKLTEDINTMCGDTAAYQF-------------PASDLTLADTEAQ 97 Query: 116 NEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILR 174 ++ E R+ A L + ++++S A L P D+ K + L G I + Sbjct: 98 SQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELAT 157 Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 L Y R D +G F RG + DI+P S D +R+EL+ +E++ ++ FD T + Sbjct: 158 MLVSAGYTRCDMIEGKGQFSFRGSLADIYPVSS-DYPVRIELWGDEIDTVASFDIDTQRR 216 Query: 235 VSTIPRFTIYP 245 + T+ +I P Sbjct: 217 IDTVKSVSITP 227 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%) Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N R L + AE L G + LHS + +R + + R+G D+L+ I + Sbjct: 377 NPRALAFCRSIEHAERLQPLFASRGVKTALLHSQLPREQRFKNLSGFRMGHIDLLISIEM 436 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 L EG+D+PEV+LVA + S R +Q +GR R GK Sbjct: 437 LNEGIDIPEVNLVAFMRVT-----HSRRIFLQQLGRGLRISKGK 475 >UniRef50_C7P023 Helicase domain protein n=11 Tax=cellular organisms RepID=C7P023_HALMD Length = 851 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 12/114 (10%) Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL-HSDIDTVERM------EIIRDLRLGEFD 498 ERV+V T ++ AE LT++L +H E +++ SD + E M E + R GEF+ Sbjct: 376 GERVIVFTESRDTAETLTDFLSDHFETEKFVGQSDTEGSEGMTQTQQQETLDRFRAGEFE 435 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 VLV ++ EGLD+PEV LV + +RS IQ GR R G+ ++ Sbjct: 436 VLVSTSVAEEGLDVPEVDLVLFYEPVPTA-IRS----IQRKGRTGRQTEGRVVV 484 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 74/181 (40%), Gaps = 28/181 (15%) Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LLS R AI + T TK E +L H V YLH D+ ER ++ +R Sbjct: 239 LLSNEEYRQAI-----IFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRN 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G F VLV ++ GLD+ + LV D RS + IGR R +G AI Sbjct: 294 GRFKVLVATDVAARGLDIQSIDLVINFD-----MARSGDDYVHRIGRTGRAEASGSAISL 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 D ++ AI E+ + N +N K V +A G K KG GK Sbjct: 349 IDHTEWNLKAAI-------ERYLRVN---------MNHKYVKAIA-GNYKGPKKVKGNGK 391 Query: 614 S 614 + Sbjct: 392 A 392 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 95/217 (43%), Gaps = 15/217 (6%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 VT + +++ L R +V++ N T A L+ E F + + Sbjct: 62 VTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDL------------- 108 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MM 158 Y+P + + +++ R+ A +L ++ SV+ P ++ Sbjct: 109 VYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRA 168 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++LF Sbjct: 169 ITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRIDLFG 227 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 EE+E + FDP T + + + R + P Y+ E+ Sbjct: 228 EEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSDEQ 264 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 123/282 (43%), Gaps = 41/282 (14%) Query: 59 PTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 P ++ + +AA+L EM +F +N V + ++ ++ P D +++ Sbjct: 32 PLVIFTKDSYVAARLQQEML-WFNQNLVVSMIPDWETLPYDSVSPHPDL-------ISDR 83 Query: 119 IEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 ++ + L KA D++++ + SA+ L + + G +D ++ L E Sbjct: 84 LKSLFLVTQKAF----DILIIPATSALNHLPPKQYITQNSFFYSKGQKVDLESLKMVLIE 139 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y + F G F VRG +ID+FP S I R++ FD E+E + FD T + Sbjct: 140 NGYINVQKVFHPGEFAVRGGLIDLFPMGS-TIPYRIDFFDTEIESIKTFDVETQK----- 193 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT---QRTQFDLE 295 +IYP T + I+ A E EL+ +E + +R + ++ Sbjct: 194 ---SIYP-----TNKIEILPARECPLTELS------IETFRKNYRERFSGDPSKSPIYTN 239 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + N++ + +G+E Y + T+FDYLP D L+ V Sbjct: 240 ISNKIPF-AGMEWYLPLFY-----QETNTIFDYLPDDTLIDV 275 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 25/212 (11%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF-----VSYYD 94 + G+ ++ A + QRP ++L PN + E + F P+ + YD Sbjct: 22 IYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPAPLVFPDREILPYD 81 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY 154 P A DA+ RL+ + E R V + A +SA+ P + Sbjct: 82 RLAPPA-----------DATAT------RLATLATLPEWRGVCL-APLSAVLQRLPPRSF 123 Query: 155 L-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 L + L VG + +RL + Y + + G RG +ID+FP+ S + R Sbjct: 124 LDQHAFVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSP-LPYR 182 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 +ELFD VE + FDP T + + + ++ P Sbjct: 183 IELFDRVVESIRAFDPETQRTLQKVEGVSLLP 214 >UniRef50_C7YH53 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YH53_NECH7 Length = 1678 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 29/249 (11%) Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 LV+DE+H + Q G +R D +TL + R P + A A Q + V Sbjct: 966 LVIDEAHC-VSQWGHDFRPDY---KTLGQVRQRYPG------VPVMALTATATQNVIVDI 1015 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT--QVDDLLSEIRQRAAINERVLVT 452 + L G D + + EVRP T + + ++ + Q N+ +V Sbjct: 1016 ---RHNL---GMDNCQTFCQSFNRPNLYYEVRPKTTNDKTIEAIASLVQSKYPNQSGIVY 1069 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T++++ AE + E L +HG + H+ +D E++E+ + GE ++V G+D Sbjct: 1070 TISRKNAEKVAESLSQHGIAASHYHAHVDPQEKVEVQNAWQRGEIKIVVATIAFGMGIDK 1129 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA----ILYGDKITPSMAKAIGET 568 P+V V G +S Q GRA R +GK + YG + + + I + Sbjct: 1130 PDVRFVM-----HHGLPKSLEGYYQETGRAGR--DGKPSDCILFYGKQDIRVLKRLIADG 1182 Query: 569 ERRREKQQK 577 + E++++ Sbjct: 1183 DGSHEQKER 1191 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 9/130 (6%) Query: 425 VRPVATQ--VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 R VAT+ + L + R RA R L ++R A+ + +Y G R +HS T Sbjct: 582 TRAVATKRRAVNALEQYRSRAG--RRTLAFCCSQRHADFMADYFTNQGVRAASVHSGPQT 639 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 R ++ L GE DV+ +++ EG+D+P V V +L + L +Q GR Sbjct: 640 APRGGTLKRLTDGELDVIFAVDMFNEGVDLPNVDTVMMLRPTESRIL-----WLQQFGRG 694 Query: 543 ARNVNGKAIL 552 R GK L Sbjct: 695 LRVAEGKDYL 704 >UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A6L307_BACV8 Length = 751 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 44/243 (18%) Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 A GL+V+DE+H + M++ A K+ V P L+ R E FE L Sbjct: 91 APGLIVIDEAHHALAASYTEMWKRYPAAKKLGVTA---TPCRLNRRGFT-ELFEVLVTSW 146 Query: 390 I--------------YVSATPGNYE------LEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 YVS PG+ E LEK G D QV +D ++ RP Sbjct: 147 SIAEFIEKGVLSVFDYVSIRPGSEERRLIDGLEKRGADGDYQVKE----MDAVLNRRP-- 200 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++ L +RQ A+ ++ +V ++ A + EY G + S +ER ++ Sbjct: 201 -GIERLYRSVRQFAS-GKKGMVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRMV 258 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNV 546 + R G+ +VLV +++ EG D P+V V + R SL +Q +GR R Sbjct: 259 EEFRHGKIEVLVNVDVFSEGFDCPDVEFVQL--------ARPTLSLAKYLQQVGRGLRRS 310 Query: 547 NGK 549 GK Sbjct: 311 EGK 313 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 101/229 (44%), Gaps = 15/229 (6%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 G++GS KT ++ ++ +++ N+ A +L ++ + V YD+ Sbjct: 29 GLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSSLLGDALV------YDF--- 79 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKM 157 P D + A + R++A + + ++V S++ L P + Sbjct: 80 ----PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAPAAWAAS 135 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L + + +D + + ++L + Y R+ G F +RG +IDI+P DD +R+ELF Sbjct: 136 ELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDD-PIRIELF 194 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEE 266 D E++ + FD T + + + + I P T + + + A I ++ Sbjct: 195 DTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARIGKQ 243 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 17/213 (7%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 T++ + S + + IA R +++ N+ A LY + E N V YF Sbjct: 26 TIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFNLYKTLTELV--NQVVYF------ 77 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLY 154 P+ ++ + + + + R++A AM + + ++ V + ++ P DL+ Sbjct: 78 -------PADESLRVESVAYSYELLGERINALYAMTQDKPMICVCHMHSMTRYITPVDLF 130 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 K ++ L G ID + + L + Y + + RGEV+D++ + D +R+ Sbjct: 131 KKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFYYSRRGEVLDVYTIQYDH-PVRI 189 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 E FD+E+E +S +D + + + I I P T Sbjct: 190 EFFDDEIEEISFYDKDSQRRTNKIESIDILPAT 222 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/279 (21%), Positives = 128/279 (45%), Gaps = 32/279 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGS-------GKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 +++++E L+ A +TLL G+ + + + LQ+ +V+ PN+ A L Sbjct: 1 MKKIDEILKQNPAFKTLLKGEGNIIVNDLNDEALLVTSAFLTLQKDIIVIKPNQYEANLL 60 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTF-IEKDASVNEHIEQMRLSATKAMLE 132 Y ++ ++++ + P +++ IE AS E + Q + + + Sbjct: 61 YQQISLINEKDSL--------------FFPVDESYRIEALASSPELLGQRIDALYQLTTD 106 Query: 133 RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA---RNDQAFQ 189 + +++ + + L L+L L+L GM ID + + L + Y R DQ F Sbjct: 107 QPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRVDQPF- 165 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 F RG VID+F + D+ LR+E FD+E++ + ++ + + + + TI P + Sbjct: 166 --YFSKRGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPASDI 222 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + + + +I + R + + E ++L +E L++ Sbjct: 223 LYDEQEVPAVLSKIND---LRDRQIEELDELYQEDYLSK 258 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 23/179 (12%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 Q P +V+ A L E++E +AV F S+ + E P +DT V Sbjct: 42 QAPVLVVTATGREADDLTSELRETLGADAVTQFPSW-ETLPHERLSPGADT-------VG 93 Query: 117 EHIEQMRLSAT--KAMLERRDVVVVASVSAIY-----GLGD-PDLYLKMMLHLTVGMIID 168 ++ +R A A VVA+V ++ GLGD P + L+ G D Sbjct: 94 RRLQVLRRLAWPDDAQYGAPLRAVVATVRSLVQPMAPGLGDAPSVTLRE------GEEFD 147 Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 ++ L EL Y R D +RG F VRG ++DIFP + D+ +RVE + +E+ L F Sbjct: 148 FEELIETLVELAYTRVDMVGKRGEFAVRGGILDIFPTTT-DLPVRVEFWGDEITDLRAF 205 >UniRef50_P20449 ATP-dependent RNA helicase DBP5 n=20 Tax=Dikarya RepID=DBP5_YEAST Length = 482 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 8/163 (4%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D+L+E+ I ++ TK+ A L L+ G V LH D+ T ER +I D R Sbjct: 319 DVLTELYGLMTIGSSIIFVA-TKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 377 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE-RSLIQTIGRAAR-NVNGKAI 551 G VL+ N+L G+D+P VS+V D +++ + I IGR R G AI Sbjct: 378 EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAI 437 Query: 552 LY-GDK----ITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + DK I ++ K G+ E R ++E I + L Sbjct: 438 SFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVEKIVKKVL 480 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 88/390 (22%), Positives = 154/390 (39%), Gaps = 71/390 (18%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPT-----MVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 +TL+G IA++ ++ T +++AP A L ++ + P + F Sbjct: 128 RTLIGAVAGTHAALIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLPAADIALF 187 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG 149 ++ + E P SDT V ++ +R A ++R VV+A V A+ Sbjct: 188 PAW-ETLPHERLSPRSDT-------VGRRLQVLRAMTGDA--DKRPQVVIAPVRAVIQPI 237 Query: 150 DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 + +HL G + ++R L + Y+R D +RG + VRG +ID+FP + Sbjct: 238 VTGIEKLEPVHLVRGEEYPFKDVVRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPPTA-T 296 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE-ELA 268 +R+E F +E++ + H+ +R + EE+ E L Sbjct: 297 TPVRLEFFGDELDEMR----------------------HFSVADQRTLSGGEELTELTLL 334 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG---YCSGIENYSRFLSGRGPGEPPPTL 325 R++L+ + RL M+ ++ Y G+E+ + L E TL Sbjct: 335 PCRELLITPEVMSRAARLKADYPAAAAMLEKIAGGIYVEGMESLTPLLI-----ESMNTL 389 Query: 326 FDYLPADGLLV-VDESHVTIPQIGGMYRGDRARKETLVEYGFR-LPSALDNRPLKFEEFE 383 + LPA +++ V+ V RAR E LV L +A D E + Sbjct: 390 TELLPAGSMIINVEPERV------------RARAEDLVATNEEFLAAAWDTS----AEAD 433 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 A+AP + G + SG +DQ Sbjct: 434 AVAPIDL------GQLRMSDSGFRTIDQTT 457 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 2/151 (1%) Query: 103 PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHL 161 P+ D K + +I + R + ++E + ++V ++ A+ L + + + + + Sbjct: 88 PAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAFRQAVFTV 147 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 +G + ++ L L Y R DQ RG + +RG ++D+F + ++ LR+E FD+EV Sbjct: 148 QLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILDVFSNQMEE-PLRIEFFDDEV 206 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + L F + + + + IYP + P Sbjct: 207 DSLRYFSLESQRSLEQVEEANIYPVSEQGKP 237 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R+ Y H + E EI+ GE DVLV ++ GLD+P + + I DADK G Sbjct: 825 RIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGL--- 881 Query: 532 ERSLIQTIGRAARN 545 L Q GR R+ Sbjct: 882 -SQLYQIRGRVGRS 894 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 118/521 (22%), Positives = 192/521 (36%), Gaps = 78/521 (14%) Query: 42 GSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAY 101 G+ +T +A P + L A + + +++++ + V F Sbjct: 41 GAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQWIGTDRVFLF------------ 88 Query: 102 VPSSDTFIEKDASVNEHIEQMRLSATK--AMLERRDV-----VVVASVSAIYGLG-DPDL 153 P+SD + S I RL A DV V+VA V A+ PD Sbjct: 89 -PASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVDVAPFVIVAPVKALMQPSLTPDE 147 Query: 154 YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + L GM ++ RL + Y + G RG +ID+F + DD+ LR Sbjct: 148 LRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPGEVNRRGGIIDVF-SPGDDLPLR 206 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 +E F +E++ L FDPLT + + I I P + RR V Sbjct: 207 IEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPL-----------------WRRDV 249 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNE-LGYCSGIENYSRFLSGRGPGEP--------PPT 324 LE + ++ L E ++E L I N RF GR P P T Sbjct: 250 ALERMRAIDTSMLRH------EALDEWLQAFDHIRNGERF-EGRALFAPFFRDNPQAPGT 302 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L +LP +V+ E+ + + + R+ ++ G LP+A L++ E A Sbjct: 303 LLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAG-ELPAAFPRPYLRWHELMA 361 Query: 385 LAPQTIYVSATPGNYELEKSGGDVV--DQVVRP--------TGLLDPIIEVRPVATQVDD 434 LA V+ + + DV+ D P G P+ + R V D Sbjct: 362 LAEAHTLVNLSNNEHPF----WDVLLSDPAPLPPSFSFGEQNGNPAPLTDTRNVHPSEDR 417 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM---EIIRD 491 + L +R+ +D+ E L GERV + ++ + + RD Sbjct: 418 FRVHLLPERLFAPAELFGGQIRRLVDDVVERLRA-GERVVLITPQAARLQELVTEALQRD 476 Query: 492 LRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGF 528 G +V+ G+ +L EG MP ++L D + G+ Sbjct: 477 ASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYSDTEIFGW 517 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 8/146 (5%) Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LLS+I + ++++ TKR ++L ++ G R +H D ER ++R+ R Sbjct: 519 LLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRS 578 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ ++LV ++ GLD+ + V D + ++ I IGR R N G + + Sbjct: 579 GKSNILVATDVAARGLDVDGIKYVINFD-----YPQNSEDYIHRIGRTGRSNTKGTSFAF 633 Query: 554 GDKITPSMAKAIGETERRREKQQKYN 579 K AKA+ + RE Q+ N Sbjct: 634 FTKNNAKQAKAL--VDVLREANQEIN 657 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 19/229 (8%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 EA++ +E GL+ G L V+ SG+T A A RPT+ + + A + + Sbjct: 14 EALQAVEAGLDAG--EDVTLAVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLA 71 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + V F DY ++ + ++ + R A ++ + ++ Sbjct: 72 AYVGLAHVCRFPERKDYPW-------------REQAPDDAVVAQRCEALGRIVRGDNCIM 118 Query: 139 VASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 VAS A+ P Y + VG I + +RL + Y A G FRV Sbjct: 119 VASARALLRCVPPVESRYWESTT-FAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVH 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G+ +++FPA+ + +R+E F +E++R+ TGQ + I+P Sbjct: 178 GDTVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIFP 225 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 47 FTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY----YDYYQPEAYV 102 FTI + I + ++ +++ N+ A QLY + F P + YF SY YD+ P + Sbjct: 14 FTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYFPSYDTIPYDHTSPNCNI 73 Query: 103 PSSDTFIEKDASVNEHIEQM-RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHL 161 S + E + +L+ K +V+ + + + L D + K L L Sbjct: 74 LS------------KRAETLSKLTTNKG----NKLVITHATNLLNKLPPKDFFAKYYLKL 117 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 M + + + L E + RN G F VRGE++D+ ES R+ + V Sbjct: 118 FPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESK--GYRINFSWDYV 175 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 E + FD T + I P V E I Sbjct: 176 ESIKQFDIDTQISTRSCNELIISPANEIVLNPETI 210 >UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DUF1_STRAG Length = 451 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 19/232 (8%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + +R GL + Q ++G +G+ K IA+ L + MV+ +T + +L + Sbjct: 9 QNKVVRTWHSGLVTN-SRQLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDKLSSD 67 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSD-TFIEKDASVNEHIEQMRLSATKAMLE-RR 134 + E+ V Y ++ + VP+++ F D S++ RLSA + + + + Sbjct: 68 ISSLIGEDNV------YQFFADD--VPAAEFIFSSLDKSIS------RLSALRFLKDPEK 113 Query: 135 DVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 + V++ S+S + L +P+++ K +G + + L L Y + Q F G F Sbjct: 114 NGVLITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSPGEF 173 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 RG+++DIF + + R+E F +E++ + FD T + + + I P Sbjct: 174 SQRGDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISP 224 >UniRef50_Q6MQY6 ATP-dependent RNA helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MQY6_BDEBA Length = 473 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%) Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D LL E+ A V+V T + E + YL+E+G +H + +R ++R Sbjct: 260 DRLLDELN---ATRGGVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGF 316 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 R GE ++V +LL GLD+P V V D +SE + IGR AR G+AI Sbjct: 317 REGEIRIVVATDLLARGLDVPHVDHVVNFDLP----FQSE-DFLHRIGRTARAGRGGEAI 371 Query: 552 LYGDKITPS 560 + +TPS Sbjct: 372 TF---VTPS 377 >UniRef50_C7ZM77 Putative uncharacterized protein n=2 Tax=Nectriaceae RepID=C7ZM77_NECH7 Length = 838 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 8/151 (5%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 A +D++ S I+ + A N+ +V T++++ AE + E L + G R+ H+ +D E+ E+ Sbjct: 291 AKCMDEIASLIKSKYA-NQSGIVYTVSRKNAEKVAESLSDQGITARHYHAGVDPQEKAEV 349 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++V G+D P+V V G +S Q GRA R+ + Sbjct: 350 QIAWQQGQIKIIVATIAFGMGIDKPDVRFVI-----HHGLPKSLEGYYQETGRAGRDGDP 404 Query: 549 K--AILYGDKITPSMAKAIGETERRREKQQK 577 + YG + + K I E + +E++++ Sbjct: 405 SDCILFYGKQDIRILKKLIAEGDGNKEQKER 435 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 11/124 (8%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V+V TK E++ E L++HG R +H DI R II + G D+LV ++ Sbjct: 248 VIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVAAR 307 Query: 509 GLDMPEVSLVAILDA--DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 GLD+ V+ V D D E ++ I GRA R +G IL+ +TP ++ I Sbjct: 308 GLDVERVTHVINYDMPHDNETYVHR----IGRTGRAGR--SGVTILF---VTPKESRLIS 358 Query: 567 ETER 570 ER Sbjct: 359 SIER 362 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 15/212 (7%) Query: 43 SGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV 102 + + +A + L RP +V+ P + A +L + + E VE + PE Sbjct: 45 AARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV------WQAPETL- 97 Query: 103 PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MMLHL 161 D F + AS E R + M E + +A + L P+ L+ L L Sbjct: 98 -PYDVFAQDRASAVE-----RSWFLQRMTEPSPGLFIAPARGLLQLLPPNESLRGCPLTL 151 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 VG + + +L L + YA Q G+F RG ++D++P +D+A+R+E F +E+ Sbjct: 152 RVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPP-GNDLAVRIEFFGDEI 210 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 + + F+P T + V + + P + P+ Sbjct: 211 DSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQ 242 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 27/189 (14%) Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 PD+ L G +D A+ LA+L Y R + Q G++ RG+++DIFP S ++ Sbjct: 135 PDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDIFPV-SSEL 193 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 +R+E F EE+++L FDP + + + + + P +++ + M + E L Sbjct: 194 PVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLIADQLRETMPDGLEPLLGA 253 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 EQ L G R L G G+ P +L DYLP Sbjct: 254 EGT---------EQLLN----------------GGTPEGMRRLMGLAWGQ-PASLLDYLP 287 Query: 331 ADGLLVVDE 339 +V+DE Sbjct: 288 DTTTVVIDE 296 >UniRef50_A2DVG1 DEAD/DEAH box helicase family protein n=3 Tax=Trichomonas vaginalis RepID=A2DVG1_TRIVA Length = 478 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 ++V+ + + D LL +I +I ++ ++ +K + ++E L++HG V +H+ +D Sbjct: 313 VDVQETSNKFDCLL-DIYGSVSI-QKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQ 370 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER I+RD R G VL+ +LL G+D+ +V+LV + K+ I IGR+ Sbjct: 371 LERDRIMRDFRTGTARVLISTDLLARGIDVQQVTLVINFELPKK-----LEQYIHRIGRS 425 Query: 543 AR 544 R Sbjct: 426 GR 427 >UniRef50_A6LBU1 ATP-dependent RNA helicase n=29 Tax=Bacteroidales RepID=A6LBU1_PARD8 Length = 426 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 58/107 (54%), Gaps = 9/107 (8%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +RV++ + +K ++L L+ V +HSD++ +R E++++ + G D+LV +++ Sbjct: 246 QRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVV 305 Query: 507 REGLDMPEVSLVAILDA--DKEGFLRSERSLIQTIGRAARNVNGKAI 551 G+D+ ++ LV D D E + + IGR AR NG+ + Sbjct: 306 ARGIDINDIKLVVNFDIPHDPEDY-------VHRIGRTARGTNGEGL 345 >UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHM4_VIBHA Length = 551 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++ E R+ A N + ++ T++ A D+TE ++ G + Y+ + ER + ++ L Sbjct: 214 VIEEWRKIAG-NRQTVIFCQTRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDT 272 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G+ V+V +N+L EG D +S V +L S+ SLIQ +GR R ++ Sbjct: 273 GKLQVIVNVNVLTEGFDSQPISCVILLRGSS-----SKSSLIQMVGRGLRKLD 320 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +I+ A ++ + L+E + NE+V++ TKRM ++L + L G + +H D Sbjct: 352 VIDSHEKANKLHESLNEKK-----NEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKS 406 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 R II D R G ++L+ ++ GLD+ V+LV D F + + IGR Sbjct: 407 QNIRDRIISDFRSGYKNILIATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGR 461 Query: 542 AAR 544 AR Sbjct: 462 TAR 464 >UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Tax=Entamoeba RepID=B0ED30_ENTDI Length = 535 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D ++EI +R ++VL+ TKR A++L L + RV +H D ER + D Sbjct: 385 DSKMNEIVKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDF 444 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILD--ADKEGFLRSERSLIQTIGRAARNVNGKA 550 + G + L+ +L GLD+ + +V + +D E ++ I GR R+V G+A Sbjct: 445 KSGAVNYLIATDLASRGLDIRNIEIVINYEMPSDIENYIHR----IGRTGRMGRSVEGEA 500 Query: 551 I 551 I Sbjct: 501 I 501 >UniRef50_Q54CB8 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54CB8_DICDI Length = 573 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 13/122 (10%) Query: 429 ATQVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVE 484 A +VD L+ + + + +E+ L+ T+TK+ A+ L Y++ +G+ VR LH D+D Sbjct: 369 ADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNR 428 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA--ILDADKEGFLRSERSLIQTIGRA 542 R I++D + D++V ++ GLD+ +S V L +D E + + IGR Sbjct: 429 RERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETY-------VHRIGRT 481 Query: 543 AR 544 R Sbjct: 482 GR 483 >UniRef50_Q2JJJ7 Primosomal protein N' n=3 Tax=Cyanobacteria RepID=Q2JJJ7_SYNJB Length = 801 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 12/105 (11%) Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL----RLGEFDVLVGINLLREGLDMPEV 515 + + E L +H ++ L D D R RDL R G+ VLVG +L +GLD+P+V Sbjct: 565 QKVVEVLHQHWPQLSILRYDSDATRRKGSHRDLLEQFRSGKAQVLVGTQMLTKGLDIPQV 624 Query: 516 SLVAILDAD----KEGFLRSERS---LIQTIGRAAR-NVNGKAIL 552 +LV ++ AD + + ERS L Q GR+ R ++ G+AI+ Sbjct: 625 TLVGVMAADGLLHQADYRAGERSFQLLTQVAGRSGRGSLPGQAII 669 >UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT4_9PLAT Length = 548 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 29/235 (12%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLP 369 + LS G P P+ D LP +L ++ QIG + RG+R F + Sbjct: 287 KILSNPDYGMPQPS-GDGLPRQTVLFSATFPPSVLQIGRSFLRGNRC-------ISFSVK 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + D+ P+ EALAP T G+ +K G + +++V+ I+E Sbjct: 339 QSEDD-PVVPAWGEALAP-------THGS---KKIIGQIPEKIVQKM----KIVEKFDWK 383 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++V +L+E+ Q +E +LV TKRM E L +L + G + LH + R + Sbjct: 384 SEVQKILNELLQDKDEDESILVFCNTKRMVELLEFHLYKSGLKCGRLHGGMGQTNRDRSL 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R LR G +VLV ++ GLD+P + V G + I +GR R Sbjct: 444 RLLRDGRINVLVATSVAARGLDIPAIGAVV-----NVGLPTNLDDYIHRVGRTGR 493 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 7/182 (3%) Query: 81 FP-ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 FP E ++ F+S++ E S D F +D V+ ++ R+S + + + Sbjct: 31 FPSERELQRFLSFHSPSGDEGIFFSHDVFPFEDVRVSAYVRNHRMSCLSNLQNKNIKRIY 90 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILR--RLAELQYARNDQAFQRGTFRVRG 197 S+ AI P + M T + ID +L E+ Y R + G F +G Sbjct: 91 TSLDAILRKTLPP---EAMKGSTKKIRIDDPFGFHPDKLVEMGYERVFTVVEPGQFSWKG 147 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 EV+DIF S + R+ LFD+ VE + LFDP + V I I+P +T E + Sbjct: 148 EVVDIFVPGS-VLPYRLILFDDIVEEIKLFDPGNQRSVKHISEIEIFPAGEVLTIEENVS 206 Query: 258 QA 259 A Sbjct: 207 LA 208 >UniRef50_A7BLK3 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. SS RepID=A7BLK3_9GAMM Length = 57 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/49 (57%), Positives = 36/49 (73%) Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 +YVTPR+ + QA++ IK+E AR K L NKL+E QRL QRT +DLEM Sbjct: 6 YYVTPRDVLSQAIDNIKKERLARLKELNAANKLVEAQRLDQRTAYDLEM 54 >UniRef50_Q9SEV8 Eukaryotic initiation factor 4a n=6 Tax=Eukaryota RepID=Q9SEV8_GUITH Length = 385 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 6/111 (5%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D + EI + I + ++ T+R E L ++++G V YLH ++ ++R +++D R Sbjct: 240 DSVIEIYSKIKITQSIIYVN-TRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFR 298 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 G F +L+ +L+ G+D+ +V LV D K + I IGR+ R Sbjct: 299 SGLFRILISTDLVSRGIDIQQVCLVINYDLPK-----LKEVYIHRIGRSGR 344 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 7/193 (3%) Query: 83 ENAVEYFVSYYDYYQPEAYV---PSSDTFIEKDASVNEHIEQMRLSATKAML--ERRDVV 137 + A++ ++ PE V P+ D AS RL+ A+ R V+ Sbjct: 56 DQAMQSLADAARFFAPELTVLTFPAWDCLPYDRASPALRATSERLATLHALQGKPRGPVL 115 Query: 138 VVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V +V+A+ + P +++ L G +D+ + L Y R D ++G + VR Sbjct: 116 VATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAMLQANGYIRTDTVTEQGEYAVR 175 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G ++D+FPA + ALR++ F +E+E + FD + + + FT+ P + + E I Sbjct: 176 GSLVDLFPA-GEPHALRLDFFGDEIESVRQFDATDQRTIGPVDGFTLLPASEALLDEETI 234 Query: 257 VQAMEEIKEELAA 269 + +E A Sbjct: 235 KRFRGRYRERFGA 247 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 17/136 (12%) Query: 430 TQVDDLLSEIRQRAAINE-----------RVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 TQ+ +++S+ +R +N+ + L+ TKRM +D+T+YL E G +H Sbjct: 333 TQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHG 392 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D D ER ++++ R G ++V ++ G+D+ ++ V ++ D G + + Sbjct: 393 DKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYV--INYDMPGNI---EDYVHR 447 Query: 539 IGRAAR-NVNGKAILY 553 IGR R G AI + Sbjct: 448 IGRTGRAGATGTAISF 463 >UniRef50_A7HND9 Primosomal protein N' n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HND9_FERNB Length = 775 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 8/80 (10%) Query: 481 DTVERMEIIRD-LRLGEFDVLVGINLLREGLDMPEVSLVAILDADK-------EGFLRSE 532 DT E+++ + D LR G+ D++ G ++ +GLD+ ++L+ ++D D LR+ Sbjct: 559 DTPEKLKKLLDYLREGKIDIVAGTKMITKGLDIYRIALIGVVDVDALISYPDINAPLRTF 618 Query: 533 RSLIQTIGRAARNVNGKAIL 552 + L+Q IGRA RN GKAI+ Sbjct: 619 QLLVQVIGRAGRNEKGKAII 638 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 21/154 (13%) Query: 424 EVRPVATQVD---------DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 +V V QVD +LL+++ A R LV TKR A+ L L + G Sbjct: 610 DVTQVVLQVDQGDKRNKLIELLADV---ADTGSRTLVFVETKRSADFLACSLCQEGYPTT 666 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE-R 533 +H D ER E +RD + G+ +LV ++ GLD+P+V V D L SE Sbjct: 667 SIHGDRLQQEREEALRDFKSGKCPILVATSVAARGLDIPKVEHVVNYD------LPSEVD 720 Query: 534 SLIQTIGRAARNVN-GKAI-LYGDKITPSMAKAI 565 + IGR R N G+A Y D S+A+++ Sbjct: 721 EYVHRIGRTGRCGNLGRATSFYDDSANASLARSL 754 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 41/313 (13%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 H+ L V I+ + Q T+V+ P+ A +L + E ++ + Sbjct: 17 HKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQDVCLF----- 71 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDL 153 P+ DTF S ++ I RLSA + + + + +S + P Sbjct: 72 ----PDWETLPYDTF-----SPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQ 122 Query: 154 YLK---MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 YL+ +++ ++ID+ + +L Y +Q + G + VRG ++D+FP S + Sbjct: 123 YLQHNVLLIKKGDRLVIDKMRL--QLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGS-AV 179 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 R++ FD+E++ + FD T + + I + P + T + I + +E Sbjct: 180 PFRLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEI 239 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 R+ + + + Q+ +++ SGIE + TLFDYLP Sbjct: 240 RR---------DPEHIYQQ-------ISKGTLISGIEYWQPLFFAEM-----ATLFDYLP 278 Query: 331 ADGLLVVDESHVT 343 L V E++ T Sbjct: 279 EQTLFVDMENNQT 291 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 8/135 (5%) Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-------VVVASVSAIYGLGDPD 152 A +PS +T + S RL A + + D VVV SV ++ P Sbjct: 88 ALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQ 147 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 L + L LTVG ++ RL EL Y R D +RG F VRG ++DIF A + + + Sbjct: 148 LGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIF-APTAEHPV 206 Query: 213 RVELFDEEVERLSLF 227 RVE + +E+ + +F Sbjct: 207 RVEFWGDEITEMRMF 221 >UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQS1_9BACT Length = 1014 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%) Query: 142 VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 +S G+ P + + +L L +G + ++ L Y+R+D ++ G + VRG ++D Sbjct: 94 ISTPGGMMSPFMNSEGLLSLRIGECAGRDRLISWLDSSGYSRSDLVWKPGEYAVRGGIVD 153 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 +F S + LRV FD+E+E + LF P + F+++ VTP Sbjct: 154 LFDPSS-RMPLRVVFFDDEIEEMRLFSPEDQTSKCKVEAFSVWELGDRVTP 203 >UniRef50_C1CWT4 Putative DEAD-box ATP-dependent RNA helicase 3 n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT4_DEIDV Length = 602 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E+ +V T TKR A++L L G LH D+ +R + R G VLV ++ Sbjct: 241 EKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVA 300 Query: 507 REGLDMPEVSLVAI--LDADKEGFL-RSERSLIQTIGRAARNVNGKA-ILYGDK 556 GLD+PEV LV L D E ++ RS R+ GRA R G A I+YGD+ Sbjct: 301 ARGLDIPEVDLVVQYHLPQDPESYVHRSGRT-----GRAGR--TGTAIIMYGDR 347 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 5/103 (4%) Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 RA+ + LV + LT+ + G RYLH+ ER ++ + G F VLV Sbjct: 280 RASTRKSTLVFCVNVAHVHTLTQSFRQFGVDARYLHAGTPIAERKALVAMFKAGHFPVLV 339 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +L EG D+P + V I RS Q IGR R Sbjct: 340 NCAILTEGADIPNIDCVLIARPT-----RSRNVFAQMIGRGMR 377 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 + VG +D RL + Y D + G F VRG ++DI+ A + +R++LFD+E Sbjct: 146 IQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIY-ASGQEQPIRIDLFDDE 204 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 ++ L FDP T + + +F I P + Sbjct: 205 IDTLKFFDPETQRTTENLKQFRILPAKEF 233 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 R LV + AE +LE G RVR +HSD + +R + DL G D + ++L Sbjct: 571 RTLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSRALADLAAGRIDAVCAVDLFN 630 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 EG+D+P V V +L + S +Q +GR R GK Sbjct: 631 EGVDVPLVDRVVMLRPTE-----SPVVFLQQLGRGLRIAEGK 667 >UniRef50_C1XGK2 ATP-dependent RNA helicase DbpA n=2 Tax=Meiothermus RepID=C1XGK2_MEIRU Length = 556 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ER +V T TK DL LE +H D+ ++R ++ R G VLV ++ Sbjct: 239 ERTIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVA 298 Query: 507 REGLDMPEVSLVA---ILDADKEGFLRSERSLIQTIGRAARNVNGK-AILYGDK 556 GLD+PEV LV + D ++ RS R+ GRA R +GK ILYG + Sbjct: 299 ARGLDIPEVDLVVHYRLPDQNESYLHRSGRT-----GRAGR--SGKVVILYGPR 345 >UniRef50_Q1GXV2 Replication restart DNA helicase PriA n=6 Tax=cellular organisms RepID=Q1GXV2_METFK Length = 738 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 15/101 (14%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVER----MEIIRDLRLGEFDVLVGINLLREGL 510 T+R+ E LT L E R L D D+ R E++ + +GE D+LVG +L +G Sbjct: 500 TQRLEETLTRLLPE----ARVLRVDRDSTRRKHALSEMLSAVHVGEVDILVGTQMLAKGH 555 Query: 511 DMPEVSLVAILDADKE----GFLRSER---SLIQTIGRAAR 544 D P ++LV +LD D F +ER L+Q GRA R Sbjct: 556 DFPNLTLVGVLDTDSALFSPDFRAAERLFAQLMQVAGRAGR 596 >UniRef50_B3RW01 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RW01_TRIAD Length = 651 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 12/113 (10%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +R +V TK A DL + + G V+ LHSD+ +R EII R+G+ +V ++ Sbjct: 326 QRSVVFVTTKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAFRVGKLKAIVATDVA 385 Query: 507 REGLDMPEVSLVAILDADKEGF----LRSERSLIQTIGRAARNVNGKAIL-YG 554 GLD+PE LV + GF R+ R+ GRA R +G A+L YG Sbjct: 386 ARGLDIPETDLVIQVAPPPNGFDFYVHRTGRT-----GRAGR--SGVAVLIYG 431 >UniRef50_A0C015 Chromosome undetermined scaffold_14, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0C015_PARTE Length = 532 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 8/122 (6%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++VL+ TK+ EDL YL EHG LH D +R ++++ + + +L ++ Sbjct: 315 DKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDVA 374 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI--LYGDKITPSMAK 563 GLD+ ++SLV D F + + IGR R + G++I + D + P +AK Sbjct: 375 SRGLDVRDISLVINYD-----FPNQIDNYVHRIGRTGRAGDKGRSITMITLDAMDPRVAK 429 Query: 564 AI 565 + Sbjct: 430 QL 431 >UniRef50_Q9DF36 RNA helicase II/Gu n=10 Tax=Tetrapoda RepID=Q9DF36_XENLA Length = 800 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + ++ +K A +L+ + + LH D+ ER +++ R G F+VL+ N+ Sbjct: 475 KTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 534 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 GLD+PEV LV + A KE RS GRA R Sbjct: 535 RGLDIPEVDLVVLYSAPKEADAYVHRS--GRTGRAGR 569 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 15/150 (10%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + Q+ L + Q ++ L+ TKR + L L R +H D + ER I Sbjct: 519 SNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRI 578 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + D R G+ ++L+ ++ GLD+ +V V D K + S I IGR R N Sbjct: 579 LHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRAGNK 633 Query: 548 GKAILY-------GDKITPSMAKAIGETER 570 G AI + +K+T MA+ I E R Sbjct: 634 GTAISFFQYDFYSPEKVT--MARKICEVMR 661 >UniRef50_Q1J0S9 DEAD/DEAH box helicase-like protein n=2 Tax=Deinococcus RepID=Q1J0S9_DEIGD Length = 591 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 11/114 (9%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E+ +V T TKR A++L L G LH D+ +R + R G VLV ++ Sbjct: 246 EKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVA 305 Query: 507 REGLDMPEVSLVAI--LDADKEGFL-RSERSLIQTIGRAARNVNGKAI-LYGDK 556 GLD+PEV LV L D E ++ RS R+ GRA R G AI +YGD+ Sbjct: 306 ARGLDIPEVDLVVQYHLPQDPESYVHRSGRT-----GRAGR--TGTAIVMYGDR 352 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 95/234 (40%), Gaps = 38/234 (16%) Query: 42 GSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY----YDYYQ 97 GS +A A P +++A N A +L E+ F P+ V + YD++ Sbjct: 54 GSSDALALAQY-AVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVHLLPDWETLPYDHFS 112 Query: 98 PEAYVPSSDTFIEKDASVNEHI----------------------EQMRLSATKAMLERRD 135 P D E+ A+++ HI E+ S+T A D Sbjct: 113 PH-----QDLISERLATLH-HIRSIGQQTARPSPQSSPASGRGSERENQSSTSAC----D 162 Query: 136 VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V+VV +A+Y L L G +D A +++ Y Q G + V Sbjct: 163 VIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTPGEYCV 222 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG +ID+F A + R++LFD+E+E ++ FD T + + +P + P + Sbjct: 223 RGGIIDLF-AMGSVLPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREF 275 >UniRef50_Q110J1 Replication restart DNA helicase PriA n=6 Tax=Bacteria RepID=Q110J1_TRIEI Length = 914 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 20/112 (17%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL----RLGEFDVLVGINLLREGL 510 T+++A++LT +RY+ D DT + + R+L GE D+L+G +L +GL Sbjct: 679 TQKVAQELTRQFPG----LRYIRYDSDTTRKKDAHRNLLNQFANGEADLLIGTQMLTKGL 734 Query: 511 DMPEVSLVAILDADKEGFL---------RSERSLIQTIGRAARNVN-GKAIL 552 D+ +V+LV ++ AD G L R+ ++L+Q GRA R N G+ I+ Sbjct: 735 DLAQVTLVGVVSAD--GLLHFSDYRANERTFQTLLQVAGRAGRGDNPGRVII 784 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 5/166 (3%) Query: 93 YDYYQPE---AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE-RRDVVVVASVSAIYGL 148 + +++P ++P +T + S ++ + RLSA + DV+ V +A+ L Sbjct: 53 WRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKL 112 Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 L G +D + L + Y G F VRG ++D+FP S+ Sbjct: 113 PPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE 172 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 + R++LFD+E++ + FD T + +S + + P + T E Sbjct: 173 -MPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSE 217 >UniRef50_A8QLH8 Fanconi anemia M n=2 Tax=Danio rerio RepID=A8QLH8_DANRE Length = 1761 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%) Query: 417 GLLDPIIEVRPVATQVDDLL-------SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 GL +P + P ++D+++ +E +A++ RV++ + + +++ E L H Sbjct: 398 GLEEPYVYTHPKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRH 457 Query: 470 GERVRYLH-----------SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 VR + E++E++ R G F+ LV + EGLD+ EV L+ Sbjct: 458 QPLVRVMTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLI 517 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 DA K S L+Q +GR R G+ ++ Sbjct: 518 VCFDAQK-----SPIRLVQRMGRTGRQRQGRIVV 546 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 NER +V TKR A+ + +L + +H D + ER + + D + G+ +LV ++ Sbjct: 530 NERTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILVATSV 589 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 GLD+PEV V D K + + IGR R N G+A+ + D Sbjct: 590 AARGLDIPEVQHVVNFDLPK-----NIDEYVHRIGRTGRCGNIGRAVSFYD 635 >UniRef50_Q9WY22 Primosomal protein N' n=13 Tax=Thermotogaceae RepID=PRIA_THEMA Length = 736 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 8/81 (9%) Query: 480 IDTVERME-IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF-------LRS 531 +D + +E I L GE D+LVG L+ + L +PE+ LV I+D D F LR+ Sbjct: 530 VDNIMELESYIDKLIRGEIDILVGTRLITKSLSVPEIGLVCIMDVDSLIFNPDYSSSLRT 589 Query: 532 ERSLIQTIGRAARNVNGKAIL 552 + ++Q +GRA+R GKAI+ Sbjct: 590 FQLVVQALGRASRGDQGKAII 610 >UniRef50_A5G4E1 Type III restriction enzyme, res subunit n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4E1_GEOUR Length = 706 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%) Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E HG RVR T ER EI+RDL G D +V I L EG+D+P++ + +L + Sbjct: 562 ERHGLRVRNFTFRESTEEREEILRDLTSGFLDGVVAIRCLDEGIDLPDLRMGFLLASST- 620 Query: 527 GFLRSERSLIQTIGRAARNVNGK--AILYGDKITP 559 + R +Q GR RN GK AI+Y + P Sbjct: 621 ----NPRQFVQRRGRLLRNSPGKNRAIIYDFIVQP 651 >UniRef50_Q9HMW5 ATP-dependent RNA helicase homolog eIF-4A n=2 Tax=Halobacterium salinarum RepID=Q9HMW5_HALSA Length = 784 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL-HSDID------TVERMEIIRDLRLGEFD 498 +RV+V T ++ AE LT +L EH + R++ D D E+ E + + R G+F+ Sbjct: 370 GDRVIVFTESRDTAEALTAFLGEHFDTRRFVGQGDADGSDGMTQTEQRETLAEFRNGDFE 429 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 VLV ++ EGLD+PEV LV + +RS +Q GR R G+ ++ Sbjct: 430 VLVSTSVAEEGLDVPEVDLVLFFEPVPTA-IRS----VQRKGRTGRQTAGRVVV 478 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 21/193 (10%) Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 +++ + L VG ID L +L + Y R G F +RG +IDI+P + Sbjct: 132 EMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGSPV- 190 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R+ELFD E++ + FD T + + I + Y+ E I ++K R Sbjct: 191 -RIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDTR 249 Query: 272 -----KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 V + + E +L + T FD +++ L F+ + P T+ Sbjct: 250 PKIEKSVRNDLKETYESFKLFESTFFDHQLLRRL---------VAFMY-----DQPSTII 295 Query: 327 DYLPADGLLVVDE 339 DY D ++ VDE Sbjct: 296 DYFANDVVIAVDE 308 >UniRef50_Q2JF81 ATP-dependent DNA helicase RecQ n=3 Tax=Frankia RepID=Q2JF81_FRASC Length = 754 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 96/231 (41%), Gaps = 28/231 (12%) Query: 327 DYLP----ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR--LP----SALDNRP 376 DYLP GLLV+DE+H I G +R D R TLV G R +P +A N Sbjct: 149 DYLPELAATTGLLVIDEAHC-ISDWGHDFRPDYRRLRTLVA-GLRPRVPVLATTATANTR 206 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + + E L A+ G L G + + +R + P E R + D L Sbjct: 207 VVEDVSEQLGTSAPAGPASAGTLVLR---GSLDRESLRLAVVSLPQAEHR--FGWLADHL 261 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 E+ +V TLTK AE+LT +L G V H I+ ER+ DL Sbjct: 262 GELPGSG------IVYTLTKAAAEELTIFLRGQGHAVATYHGGIEAAERIVAEEDLLANR 315 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 L+ + L G D P++ V + A S S Q IGRA R ++ Sbjct: 316 VKALIATSALGMGFDKPDLGFVVHIGAPS-----SPISYYQQIGRAGRALD 361 >UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DSB9_ZYGRO Length = 491 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 ++L+E+ I ++ + TK+ A L L++ G +V LH D+ + ER +I D R Sbjct: 328 EVLTELYGLLTIGSSIIFVS-TKKTANLLYARLKQEGHQVSILHGDLQSKERDRLIDDFR 386 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILD 522 G VL+ N+L G+D+P VS+V D Sbjct: 387 EGRSKVLITTNVLARGIDIPTVSMVVNYD 415 >UniRef50_D0NFP0 DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NFP0_PHYIN Length = 829 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 EI+R RLGEF+VLV + EGLD+ EV L+ DA L S +IQ +GR R Sbjct: 585 EIVRRFRLGEFNVLVATCIAEEGLDIGEVDLIVSFDA-----LTSPVRMIQRMGRTGRKR 639 Query: 547 NGKAIL 552 G+ I+ Sbjct: 640 VGRVII 645 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/312 (21%), Positives = 127/312 (40%), Gaps = 34/312 (10%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 ++ G Q L+ + G ++ ++A +I + T ++ + T A L E + Sbjct: 11 SVKKGQQTQRLVTLGGLSQSLSLAQLIL-ANKGTSLIVTHDTPTAMLL--------ETEL 61 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 Y ++ +D P +T S ++ + RL + V+ ++ + Sbjct: 62 HYLLANHDVNL--CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLM 119 Query: 147 GLGDPDLYLKM-MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 120 VRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPT 179 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+ELFD+E+E + FD T + + + P + T A+E ++ Sbjct: 180 GCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDS----AAIEGFRQ 234 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R +V+ + E + + Q +L +GIENY + +L Sbjct: 235 RYRRRFEVISK-----EAESVYQLVSRNL-------MPAGIENYLPLFF-----DDTASL 277 Query: 326 FDYLPADGLLVV 337 FDYLP + L+ Sbjct: 278 FDYLPENTQLIT 289 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 9/126 (7%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E+V++ T TK A++L E L E G +H D +R ++ + R G+ +LV ++ Sbjct: 247 EKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILVATDVA 306 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD+ V LV G R S I IGR R G AI +TPS K + Sbjct: 307 ARGLDIKGVDLVI-----NYGLPRDAESYIHRIGRTGRAGREGTAISI---MTPSEDKQL 358 Query: 566 GETERR 571 +++ Sbjct: 359 QNIQKK 364 >UniRef50_Q1MY97 DEAD/DEAH box helicase-like protein n=1 Tax=Bermanella marisrubri RepID=Q1MY97_9GAMM Length = 614 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++V TK+ E++ +Y+ HG R L+ D+ +R + L+ G+ D+LV ++ Sbjct: 248 MMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAAR 307 Query: 509 GLDMPEVSLVAILDA--DKEGFLRSERSLIQTIGRAARNVNGKAILY 553 GLD+ +S V D D E ++ I GRA R +G+AIL+ Sbjct: 308 GLDVERISHVVNYDIPYDAESYVHR----IGRTGRAGR--SGEAILF 348 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 18/169 (10%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VL+ K AE+L L++ G + LH D+D ER ++I D + + VLV ++ Sbjct: 501 VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAAR 560 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD+P + V D ++ + R IGR R K + Y +TP + G+ Sbjct: 561 GLDIPSIKTVINYDVARDIDTHTHR-----IGRTGR-AGEKGVAY-TLLTPKDSNFAGDL 613 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 R E ++ ++K+++D+ K++ KG GK + + Sbjct: 614 VRNLEGANQH----------VSKELLDLAMQNAWFRKSRFKG-GKGKKL 651 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 DV+V+ + S ++ L + K L+VG + + I +L Y R + G F Sbjct: 109 DVLVLNASSLLWKLPPRKYFEKESFTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFC 168 Query: 195 VRGEVIDIF-PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +RG +ID+F P ++ I R++ DE+++ + LFD + ++TI TI P HY Sbjct: 169 IRGSLIDLFSPLYTNPI--RIDFDDEKIDLIKLFDVDSQLTLNTINSVTIIPSEHY 222 >UniRef50_UPI0001C36ED7 primosomal protein N'''' n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36ED7 Length = 814 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 16/110 (14%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTV----ERMEIIRDLRLGEFDVLVGINLLREGL 510 T+++ E+L Y + R L D DT + D R G++D+++G ++ +GL Sbjct: 569 TQKLEEELAVYFPQ----ARVLRMDADTTFSRYSYEKNFADFRDGKYDIMIGTQMIGKGL 624 Query: 511 DMPEVSLVAILDADKEGFLRSERS-------LIQTIGRAARN-VNGKAIL 552 D P+V+LV +L DK F RS + Q +GR+ R G+AIL Sbjct: 625 DFPDVTLVGVLSVDKALFAGDFRSYERTFSLITQVVGRSGRGERQGRAIL 674 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 33/218 (15%) Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +L + + P + F S+ + E P SDT V + + +R Sbjct: 88 AEELQAALGSYLPSEQIANFPSW-ETLPHERLSPRSDT-------VGQRLSVLR------ 133 Query: 130 MLERRDV------VVVASVSAIY-----GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 LER D VVVA V ++ GLG + + L G D + ++ LA Sbjct: 134 RLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQME-----PVTLRTGQDYDFQQLVVELAG 188 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y+R D +RG F VRG +ID+FP ++D +R E F +E++ + F + ++T Sbjct: 189 AAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRWFAVADQRTLTTA 247 Query: 239 --PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 P + P + + ++KE+L R++L Sbjct: 248 EHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGGREML 285 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P +++ L+S + I + +V TK+ +++ E L G + LH D+ ER Sbjct: 222 PETEKIEGLVSILNSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERT 279 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 + I+ + G+ ++LV ++ GLD+P+VS V D + + S I IGR R Sbjct: 280 QTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQ-----NPESYIHRIGRTGRAG 334 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 GKAI + + KAI E +R K++ Sbjct: 335 REGKAITLINYRERKLLKAIEEAINKRLKRE 365 >UniRef50_A6LJP7 Primosomal protein N' n=2 Tax=Thermosipho RepID=A6LJP7_THEM4 Length = 742 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 7/72 (9%) Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK-------EGFLRSERSLIQTIG 540 I++ L GE DVLVG ++ +GLD+P V+L+ ++D D L R L+Q +G Sbjct: 544 ILKKLYSGEIDVLVGTKMITKGLDVPTVNLIGVIDVDAIQNIPDYNSSLNLFRLLVQVVG 603 Query: 541 RAARNVNGKAIL 552 RA R G+A + Sbjct: 604 RAGRKERGRAFV 615 >UniRef50_Q2RK26 Replication restart DNA helicase PriA n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK26_MOOTA Length = 821 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 12/125 (9%) Query: 474 RYLHSDIDTVERM----EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD----K 525 R + +D DT R EI R G D+LVG + G+D P V+LV +++AD + Sbjct: 601 RIIRADGDTTARKGRWEEIYRTFAGGHADILVGTQTIARGMDFPGVTLVGVVNADLSLYQ 660 Query: 526 EGFLRSERS---LIQTIGRAARNVNGKAILYG-DKITPSMAKAIGETERRREKQQKYNEE 581 F ER+ L Q GRA R GK I+ + P++ A + RR +Q+ Sbjct: 661 PDFRARERTFQLLTQVAGRAGRKSAGKVIIQTYNPADPAITLAAAQDYRRFYEQEIAGRR 720 Query: 582 HGITP 586 G P Sbjct: 721 AGGYP 725 >UniRef50_C9LLK8 Primosomal protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLK8_9FIRM Length = 791 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 16/110 (14%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVER----MEIIRDLRLGEFDVLVGINLLREGL 510 T+R+ EDL + L E + D+D+ R +I+ + R G+FD+L G ++ +G Sbjct: 558 TQRIEEDLKKLLPE----AKCCRFDVDSTARKYSAAKILSNFRDGKFDILFGTQMVAKGH 613 Query: 511 DMPEVSLVAILDADKE----GFLRSERS---LIQTIGRAARNV-NGKAIL 552 D+P V V IL D +L +E++ + Q GRA RN+ G+ IL Sbjct: 614 DIPGVQSVGILSVDSTLNMPTYLAAEQTFNLITQCAGRAGRNLEQGRVIL 663 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 19/223 (8%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF-VSYYDY 95 L G+ GS +F I + + + P +++ +K AA + +++ F E+ V ++ SY Sbjct: 25 LNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPASYKKP 84 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDLY 154 YQ S T +A++ E ++ K + + +V+ AI+ + Sbjct: 85 YQ------HSQT---DNANILLRAEVLQRFGKKG----KPLCIVSYPEAIFEKVIQKKTL 131 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 K L+L G +I + L E + R D G F VRG ++D+F D R+ Sbjct: 132 EKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVFSYAYDH-PYRI 190 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYP---KTHYVTPRE 254 E F EEVE + FD ++ + ++ +I P +T +T R+ Sbjct: 191 EFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDTLTKRQ 233 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 41/173 (23%) Query: 408 VVDQVVRPTGLLDPI-----IEVRPVATQVDDLLSEIRQRA---------------AINE 447 V+D++V G+L+ I E + + +++ LS+++ A INE Sbjct: 204 VMDKIVYHRGILEMIDDKWLCEAKFTSVKIEADLSDVKSTADDFQLAPLSSLMNTKEINE 263 Query: 448 RVLVTTLTKRMAEDLTEYL----------------EEHGERVRYLHSDIDTVERMEIIRD 491 +L T L K+ + L L +++G Y+ SD +ER II+ Sbjct: 264 VILKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTKQIERDNIIQK 323 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 + GE +VL+ + EG DMP + + + K S LIQ IGR R Sbjct: 324 FKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTK-----SRSLLIQMIGRGLR 371 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 LTE HG RY+ D ER E + + EF VL+ + EG D+P + V + Sbjct: 312 LTERFRHHGIDARYVFGDTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLA 371 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGK 549 RS LIQ IGR R GK Sbjct: 372 RP-----TRSRNLLIQMIGRGMRLHEGK 394 >UniRef50_D1ZJG2 Putative SGS1 protein n=1 Tax=Sordaria macrospora RepID=D1ZJG2_SORMA Length = 2276 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 14/150 (9%) Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRL 494 ++E+ Q + ++ TL+++ AE++ + LEE HG R ++ H+ I T E++++ D + Sbjct: 1432 IAELIQEKYDGQTGIIYTLSRKSAENIAKNLEEKHGIRAKHYHASITTEEKIKVQHDWQA 1491 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA---- 550 G+ V+V G+D P+V V + +S Q GRA R +GK Sbjct: 1492 GDVKVVVATIAFGMGIDKPDVRFVI-----HQHIPKSLEGYYQETGRAGR--DGKPSDCY 1544 Query: 551 --ILYGDKITPSMAKAIGETERRREKQQKY 578 YGD + A G+ + ++++QK+ Sbjct: 1545 LYFAYGDIQSLRRMIAEGDGDYEQKERQKH 1574 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 23/155 (14%) Query: 176 LAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 L E Y + F++G F +RG +IDI+P S +A R++LFD E++ + + + + Sbjct: 144 LTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGS-KVAFRIDLFDNEIDSIKELNTESQRSG 202 Query: 236 STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLE 295 + I I P V + A++++ NKL ++ L ++ Sbjct: 203 NQIQSINIMPSHELVYNNQNTTFALDKL--------------NKLCGDKALNSTIATYIQ 248 Query: 296 MMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 NE Y SGIE Y + +L+DYLP Sbjct: 249 -NNE--YFSGIEFYLPLFYDK-----LSSLYDYLP 275 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 89/380 (23%), Positives = 147/380 (38%), Gaps = 77/380 (20%) Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L G +D +++ LA L Y R G + RG+++DIFP S ++ +R+E F Sbjct: 179 CLALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRRGDIVDIFPV-SAELPVRLEWF 237 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +E+E++ FDP + + + + + P + + I+ L A+ L Sbjct: 238 GDELEKIREFDPASQRSLDDLTGLVLTPTSFD-----------QVIEPALNAQAIDLSAW 286 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + E ++L G E RFL G E P L DYLP + + V+ Sbjct: 287 GEDAETEQLF-----------------GKEGLQRFL-GLAFTE-PACLLDYLPTETVCVL 327 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD--NRPLKFEEFEALAPQTI----Y 391 DE A E E + SAL N P F AL + Y Sbjct: 328 DEPEQCA-----------AHSERWFEAVAQDWSALQLPNLPQLHRNFSALGDRLKTDFQY 376 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---QVDDLLSEIRQRAAINER 448 ++ + E+ ++ GD +D I RP+ T Q L +R + I Sbjct: 377 ITLS----EIHEANGDSLD------------ISARPIPTMPHQFAKLAEILRGKREIYSG 420 Query: 449 VLV----TTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVERMEIIRDLRLGEFDVLVG 502 + + T L L+EH V+++ + D +E+ +I R ++ L Sbjct: 421 LTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIEKSQIQRTAVTLKYSGLAE 480 Query: 503 INLLREGLDMPEVSLVAILD 522 + EG +P LV + D Sbjct: 481 L----EGFILPTFRLVLVTD 496 >UniRef50_Q7NHM7 Gll2508 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NHM7_GLOVI Length = 437 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 22/143 (15%) Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 L+ T TK+ A++L E L++ G R LH D++ R ++ R + +V+V ++ G Sbjct: 245 LIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAARG 304 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY--------------- 553 LD+ ++S V D ++G S I IGR R G AI + Sbjct: 305 LDIADLSHVINYDMPQDG-----ESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERA 359 Query: 554 -GDKITPSMAKAIGETERRREKQ 575 G + P+ + GE + RR ++ Sbjct: 360 TGSTLVPAKIPSAGEIQVRRTER 382 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L L G+ +D +L RLA L Y R ++ F+ G F VRG ++D+FP+ +RVE + Sbjct: 108 LRLAGGVELDMDEVLLRLAALGYERVERVFRPGEFAVRGGILDLFPSTRRS-PVRVEWWG 166 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIY 244 +EVE + T + V + T+Y Sbjct: 167 DEVESVRAVSLATRRAVKELAAVTVY 192 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 5/88 (5%) Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 LT+ E G R++ D VER E + + R G+F VLV + EG D+P + V + Sbjct: 285 LTQKFREFGIDARFVTGDTHKVERSERLEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLA 344 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGK 549 K S L+Q IGR R GK Sbjct: 345 RPTK-----SRNLLVQMIGRGMRLHPGK 367 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 30/196 (15%) Query: 43 SGKTFTIANVIADLQRPTMVLAPN--KT----LAAQLYGEMKEFFPENAVEYFVSYYDYY 96 SG++F +A+ + + P +V+A N KT L + +G PE VE Sbjct: 62 SGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLECWGSPYLILPE--VEPV------- 112 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDLYL 155 P +P TF+ + RLS ++L+ +++ + A+ L P+L Sbjct: 113 -PAESLPDP-TFLAE-----------RLSTAYSLLDFPSGIIITTEQAMEEALPSPELLK 159 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L L V D++A++ +L Y R D RG F VRG +ID F +S LR+E Sbjct: 160 EKRLPLAVENSFDRKAVIEKLVTAGYERVDSVDCRGQFAVRGAIIDTFCWDS-CYPLRME 218 Query: 216 LFDEEVERLSLFDPLT 231 + L FDP+T Sbjct: 219 WEGNRLISLRQFDPIT 234 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 VG +D + L + + D ++ G F +RG ++DIF + S+D R+E FD+E+E Sbjct: 174 VGEKVDIEFLAEILHTYDFDKTDFVYEAGQFSIRGGIVDIF-SYSNDYPYRLEFFDDELE 232 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 + LFDP + + + + I P + ++VQ + E Sbjct: 233 SIRLFDPESQLSIEQVSQIAIIPNV-----QTKLVQEVRE 267 >UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09E47_STIAU Length = 494 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 43/287 (14%) Query: 1 MSKPFK-------LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI 53 M PF L A P+GD RL E L+ G +T G+ G+ + +A + Sbjct: 38 MDTPFSQTAGSEALRGAVPPTGD---PFARLLERLQPGHRARTQ-GLHGAARGHVLARLS 93 Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF----------VSYYDYYQPEAYVP 103 L+ P + +A ++ A L G++ F N V YD PE ++ Sbjct: 94 RTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPRVLRLPADEVLPYDELSPEPHIV 153 Query: 104 SSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTV 163 S S + LS +A+L R V VS + GL LT Sbjct: 154 SERLGTLFHLSQGTRFPALVLS-LRALLRR-----VLPVSTMTGLAQ---------LLTT 198 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G ID+ + R+L + Y + GTF VRG ++D+F + + +R+E F + +E Sbjct: 199 GQDIDRDTLARQLVLMGYQSSPLVEDPGTFSVRGGILDVF-SPLYERPVRLEFFGDTIES 257 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 + LF+P + V ++ ++ P RE ++ K E AR Sbjct: 258 IRLFEPDNQRTVDSLKEVSLVPA------RELLLTDQTRAKAEATAR 298 >UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA Length = 636 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 9/136 (6%) Query: 434 DLLSEI-RQRAAINERVLVTTL--TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIR 490 DLLS I +Q +E L TK+ A+ L E+L H V +H D ER E +R Sbjct: 418 DLLSNITKQNDGDDENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALR 477 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GK 549 R G +LV + GLD+P V V D E + IGR R N G Sbjct: 478 LFRCGRCPILVATAVAARGLDIPNVKQVINFDLPAE-----VEEYVHRIGRTGRMGNLGT 532 Query: 550 AILYGDKITPSMAKAI 565 A + ++ ++A + Sbjct: 533 ATSFFNEKNRNVANGL 548 >UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7VM16_9ANNE Length = 990 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D LL +++R ++++V+ KRMA+ ++ +L + +H ++ ER + +RD Sbjct: 761 DKLLEIVQKRGE--DKIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALRDF 818 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 R G +LV N+ GLD+PEV V D + IGR R N GKA Sbjct: 819 RSGVSPILVATNVAARGLDIPEVKHVINYDMPPH-----IEEYVHRIGRPGRCGNTGKAT 873 Query: 552 LY 553 + Sbjct: 874 AF 875 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 + P++ + + G ++D A+ RLAE + D+ +G F RG + D++PA + Sbjct: 110 IAPPEVVAAHVWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-T 168 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 ++ LR+++F +++E + FDP + + ++ FT P Sbjct: 169 EETPLRIDMFGDDIESIRRFDPESQRSGESLSAFTSVP 206 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 118 HIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRL 176 ++ RL A ++ +VAS+ S IY L + K +L + VG I + I + L Sbjct: 103 QVQGKRLKAISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFL 162 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 AE Y R Q + G + +RG ++DIFP ++ +R+E F +E+ + F+ Sbjct: 163 AENLYQRTPQVEKIGEYSIRGGILDIFPPLYEN-PIRIEFFGDEISSIRFFN 213 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 +R +V TK M + LTEYL +HG R +H D+ R ++++ R G+ +LV ++ Sbjct: 243 KRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVATDVA 302 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 G+D+ + V D +E I IGR R Sbjct: 303 ARGIDVENIEAVFNFDIPQE-----FEHYIHRIGRTGR 335 >UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AF33_9CRYT Length = 590 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 19/143 (13%) Query: 416 TGLLDPIIEV--RPVATQVDDL--LSEIRQRAAINE----------RVLVTTLTKRMAED 461 T L+DPI+ R AT ++ L L +RQ + RVL+ K+ ++ Sbjct: 350 TALVDPIVVNVGRAGATTLNVLQELEYVRQECRLPHILQSLQKTAPRVLIFCENKKDVDE 409 Query: 462 LTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + EYL G + +HS + +R + + RLG DVL+G ++ +GLD P + V Sbjct: 410 IHEYLLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVINY 469 Query: 522 DADKEGFLRSERSLIQTIGRAAR 544 D KE + + IGR R Sbjct: 470 DMPKE-----IENYVHRIGRTGR 487 >UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 Tax=Amniota RepID=D2I3Z4_AILME Length = 645 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV--------DDLLSEI 439 QT+ +SAT + + + + ++ G LD ++ V V V LL E Sbjct: 421 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLD-LVAVNTVTQNVIITTQEEKRSLLQEF 479 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q + ++V+V + +A+DL+ L G V+ LH D D +R + D R G+ V Sbjct: 480 LQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKV 539 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 L+ +L GLD+ +++ V D F R+ + +GR R Sbjct: 540 LIATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGR 579 >UniRef50_C4M4V5 RecQ family helicase, putative n=2 Tax=Entamoeba RepID=C4M4V5_ENTHI Length = 1182 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 VRP V D + E+ +R + ++ L+++ D+ + L + G + +Y H+ +DT E Sbjct: 663 VRPKTKGVIDEIEEMIKRKYKGQSGIIYCLSQKNTMDIAQELNKRGIKSKYYHAGMDTKE 722 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R + ++ GEF+V+ G+D P+V V +S Q GRA R Sbjct: 723 RTTVQKEWCDGEFNVICATIAFGMGIDKPDVRFVI-----HHSLPKSLEGYYQESGRAGR 777 Query: 545 NVN-GKAILY 553 + ILY Sbjct: 778 DGEPADCILY 787 >UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukaryota RepID=DBP3_NEUCR Length = 614 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 13/156 (8%) Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 GN +E ++Q V +++ R ++ +LL E ++ + ++R+LV L K Sbjct: 408 GNGNIELQANSRIEQKVE-------VVDPRGKEFRLYELLKEAQKGSQKDDRILVFCLYK 460 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + A + ++L G +V +H D+ +R + + G VLV ++ GLD+PEV Sbjct: 461 KEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLEAFKSGTTTVLVATDVAARGLDIPEVK 520 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 LV + F + + IGR R GKAI Sbjct: 521 LVINVT-----FPLTIEDYVHRIGRTGRAGKLGKAI 551 >UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Piroplasmida RepID=Q4MYL1_THEPA Length = 707 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 8/140 (5%) Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + +V D L + ++VL+ + K A+ LT L + LH + +R Sbjct: 545 PNSYEVRDKLFDFLGSIPPEKKVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRE 604 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-N 545 I+ R G+ +VLV ++ GLD+ ++ V LD K S I IGR R N Sbjct: 605 RILNMFRSGDVNVLVATDVAARGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGN 659 Query: 546 VNGKAILYG--DKITPSMAK 563 G+++LY D +TP+ K Sbjct: 660 SKGESLLYFPIDTLTPAKVK 679 >UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=root RepID=IF4A3_HUMAN Length = 411 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D L ++ I + V+ TKR + LTE + E V +H D+ ER I+++ R Sbjct: 266 DTLCDLYDTLTITQAVIFCN-TKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 324 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL-IQTIGRAAR 544 G VL+ ++ GLD+P+VSL+ D L + R L I IGR+ R Sbjct: 325 SGASRVLISTDVWARGLDVPQVSLIINYD------LPNNRELYIHRIGRSGR 370 >UniRef50_A4VTF2 Primosomal protein N' (Replication factor Y)-superfamily II helicase n=106 Tax=Firmicutes RepID=A4VTF2_STRSY Length = 812 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 15/103 (14%) Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL--RLG--EFDVLVGINLLRE 508 T T++ ++L E L E R L D+DT ++ DL R G E D+L+G ++ + Sbjct: 571 TGTQKAYDELQELLPE----ARILRMDVDTTKKKGAHEDLLERFGRGEADILLGTQMIAK 626 Query: 509 GLDMPEVSLVAILDADKE----GFLRSERS---LIQTIGRAAR 544 GLD P V+LV +L+AD F SER+ L Q GRA R Sbjct: 627 GLDFPNVTLVGVLNADTALNLPDFRSSERTFQLLTQVAGRAGR 669 >UniRef50_B3LA92 ATP-dependent DNA helicase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LA92_PLAKH Length = 1252 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 L+ +K+ E++ +L+E G VR H+D+ E+ E E ++V Sbjct: 284 TLIYVTSKKECENIFSFLKEKGLLVRMYHADLSNDEKKEAHEKFLKDEVQIIVATVAFGM 343 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+D P++ + GF RS + +Q +GRA R N N +AIL+ Sbjct: 344 GIDKPDIRRII-----HYGFSRSLEAYVQQVGRAGRDNSNAEAILF 384 >UniRef50_B9MR35 Primosomal protein N' n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR35_ANATD Length = 724 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 15/109 (13%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERM----EIIRDLRLGEFDVLVGINLLREGL 510 T+++ E++ Y ++ R L D DT + +I++ R E D+LVG ++ +GL Sbjct: 488 TQKIEEEIKAYFKD----ARVLRMDSDTTSKKDATEQIVKKFREKEADILVGTQMIAKGL 543 Query: 511 DMPEVSLVAILDAD----KEGFLRSERS---LIQTIGRAARNVNGKAIL 552 P+++LV ++DAD F ER+ L Q GR+ R GK I+ Sbjct: 544 HFPDLTLVGVIDADILLNMPDFRSRERTFQLLTQVAGRSGREKPGKVII 592 >UniRef50_D2LVR6 Primosomal protein N' n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LVR6_BACS4 Length = 809 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 15/102 (14%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERM----EIIRDLRLGEFDVLVGINLLREGL 510 T+++ E+L + L VR + D+DT R E++ GE DVL+G ++ +GL Sbjct: 569 TQKVEEELNKVLSG----VRVIRMDVDTTRRKGSHEELLNKFGRGEADVLLGTQMIAKGL 624 Query: 511 DMPEVSLVAILDADK----EGFLRSERS---LIQTIGRAARN 545 D P ++LV +L AD F +ER+ L Q GRA R+ Sbjct: 625 DFPNITLVGVLAADSMLHIPDFRSAERTFQLLTQVSGRAGRH 666 >UniRef50_A7EFH4 ATP-dependent DNA helicase mph1 n=2 Tax=Sclerotiniaceae RepID=MPH1_SCLS1 Length = 1235 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 15/115 (13%) Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL----HSDIDTVERM------EIIRDLRLGEF 497 RV+V T + AED+ L +HG +R SD E M E IR + G Sbjct: 638 RVIVFTEYRDSAEDIARVLNKHGPMIRASVFVGQSDSKRSEGMNQEKQLETIRKFKAGGI 697 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 +V+V ++ EGLD+ EV L+ D+ S ++Q +GR R GK +L Sbjct: 698 NVIVATSIGEEGLDIGEVDLIVCYDSSS-----SPIRMLQRMGRTGRKRAGKIVL 747 >UniRef50_C7MDQ1 ATP-dependent DNA helicase RecQ n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDQ1_BRAFD Length = 762 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ TLT AEDL E L+ G RVR D ER E+ R L+ E L + L G Sbjct: 271 IIYTLTVSAAEDLAELLDRPGRRVRAYTGRTDAEERAELERALKENEVKALAATSALGMG 330 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 D P++ V L A S + Q +GRA R + +L Sbjct: 331 FDKPDLGFVVHLGAPS-----SPVAYYQQVGRAGRATDTADVL 368 >UniRef50_Q65N62 DEAD-box ATP-dependent RNA helicase cshA n=135 Tax=Firmicutes RepID=CSHA_BACLD Length = 487 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 10/134 (7%) Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 E +V TKR ++LTE L G +H D+ +RM +R + G +VLV ++ Sbjct: 242 ELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVA 301 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP---SMAK 563 GLD+ V+ V D ++ S + IGR R GK + ITP M + Sbjct: 302 ARGLDISGVTHVYNFDVPQD-----PESYVHRIGRTGR--AGKTGMAMTFITPREKDMLR 354 Query: 564 AIGETERRREKQQK 577 AI +T +R+ + K Sbjct: 355 AIEQTTKRKMDRMK 368 >UniRef50_D0Z909 Putative helicase n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z909_EDWTE Length = 1078 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 9/111 (8%) Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEF 497 R+ I +++V K+ A +L + +E ER+ +++ I R +I D++ G + Sbjct: 351 RKNGWIRHKMMVRADNKKHAIELFDMYKELFPNERIAIVYTGIKN--RRNLISDIKNGAY 408 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 D++V +++L+EG D P+ + A+ G +S L+Q IGR R G Sbjct: 409 DIIVCVDMLKEGFDYPDFKIAAV-----HGIHKSLAVLLQFIGRFTRTQEG 454 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 10/122 (8%) Query: 433 DDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYL---EEHGERVRYLHSDIDTVERME 487 ++++ E RQ R + R +V T AE + L ++ R YLHS + +R Sbjct: 357 EEIVDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSRQQRQI 416 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ RLG ++ +++ EG+D+P+V+L+A L S R +Q +GR R Sbjct: 417 LLNAFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTH-----SRRIFVQQLGRGLRLRE 471 Query: 548 GK 549 GK Sbjct: 472 GK 473 >UniRef50_A0LD66 DEAD/DEAH box helicase domain protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD66_MAGSM Length = 572 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 24/173 (13%) Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDDLLSE----------I 439 + P EL+ +G D++V P G + +P E P DDL +E Sbjct: 258 SQPAMLELDDNG----DEIVEPNGAMLSGDEPSTESEPFVPHPDDLDTEDAARAAEAALA 313 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + R +V TKR E + +L+ +G + YL D+ ++R+++++ + GE+ V Sbjct: 314 NAQKTPPGRSMVFVNTKRAGERVERWLKANGIQAGYLSGDVPQMKRLKVLKRFQDGEYPV 373 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 L+ ++ GL + V+ V D + + IGR AR N G AI Sbjct: 374 LIATDVAGRGLHIDGVTHVINYD-----LPDNAEDYVHRIGRTARAGNRGDAI 421 >UniRef50_C5S9J5 DEAD/DEAH box helicase domain protein n=6 Tax=Gammaproteobacteria RepID=C5S9J5_CHRVI Length = 683 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 R + R++V TKR A+ + YL+ +G L D+ +R++++RD G VLV Sbjct: 293 RGWPDGRIIVFVNTKREADRVWGYLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLV 352 Query: 502 GINLLREGLDMPEVSLVAILD--ADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G ++ GL +P+V+ V D D E + + IGR AR G A+ + Sbjct: 353 GTDVAARGLHIPDVTHVVNYDLPEDPEDY-------VHRIGRTARAGAAGDAVSF 400 >UniRef50_B0K293 Primosomal protein N' n=8 Tax=Thermoanaerobacter RepID=B0K293_THEPX Length = 732 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 15/101 (14%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERM----EIIRDLRLGEFDVLVGINLLREGL 510 T+R+ D+ ++ R L D+DT + +I D R G+ D+L+G ++ +G Sbjct: 491 TERVENDIKKFFPN----ARVLRMDVDTTRKKGSHEKIFYDFRNGKADILIGTQMISKGF 546 Query: 511 DMPEVSLVAILDADKE----GFLRSERS---LIQTIGRAAR 544 D+P V+LV ++ AD F SER+ L Q GRA R Sbjct: 547 DIPNVTLVGVILADITLNLPDFRSSERTFQLLTQVAGRAGR 587 >UniRef50_B5ZLE2 DEAD/DEAH box helicase domain protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZLE2_GLUDA Length = 390 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P A + LL+ +R+ A R +V T TK+ A+ L L G LH D V R Sbjct: 244 PAARKAASLLAVLRREA--GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRD 301 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 + D R G VLV +++ G+D+ +V+LV D ++ + I IGR AR Sbjct: 302 RTLDDFRRGRLLVLVATDVMARGIDVEDVALVVNFDIPEQ-----PETYIHRIGRTAR 354 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 21/207 (10%) Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY----YDYYQPEAYVPSSDTFI 109 A+ Q +V+A + Y +K + + + F ++ YDY+ P + SS Sbjct: 37 ANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDNWEVLAYDYFSPHPDITSS---- 92 Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ 169 LS K++ +R +V+ S L + K L++ + I+ Sbjct: 93 ----------RLKTLSKLKSL--KRGIVITTLESLFSHLCPLEFSKKYSLNIRINDKINP 140 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 +L ++ Y + G F +R +ID++P + A R+ LF+++VE + F+ Sbjct: 141 DTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGTKT-AYRINLFNQKVESIRAFNT 199 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERI 256 T + + IP T+ P + T I Sbjct: 200 STQRSKTKIPEITLLPAREFATDNTSI 226 >UniRef50_Q23U16 DEAD/DEAH box helicase family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23U16_TETTH Length = 475 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D L E+ I + ++ TK+ ++L + L E V +H ++D R I+++ R Sbjct: 329 DTLVELYNNIEIAQAIIYCN-TKKRVDELRDKLIEKNMTVSAMHGEMDQQNRDLIMKEFR 387 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VL+ +LL G+D+ +V+LV D L+ E S I IGR+ R G AI Sbjct: 388 TGTSRVLITTDLLSRGIDIHQVNLVINYDLP----LKKE-SYIHRIGRSGRFGRKGVAIN 442 Query: 553 YGDKITPSMAKAIGETERRREKQ 575 + + P+ AK + ETE+ + Q Sbjct: 443 F---VVPADAKFLKETEKYYQTQ 462 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 11/121 (9%) Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D+LSE + ++ LV KR A+ L YL E G +H D ER E +RD + Sbjct: 596 DILSE-----SGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFK 650 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 G+ +L+ ++ GLD+P V V D +S + IGR R N GKA Sbjct: 651 QGKAPILIATSVAARGLDIPNVKHVINYD-----LPQSIDEYVHRIGRTGRCGNLGKATS 705 Query: 553 Y 553 + Sbjct: 706 F 706 >UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Poaceae RepID=RH9_ORYSJ Length = 628 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 +L E+ + A + +V T TKR A+ L+ Y + + LH DI +R ++ R Sbjct: 331 VLGELIKEHAKGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFRE 389 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G F++L+ ++ GLD+P V LV + L RS GRA + GKAI+ Sbjct: 390 GHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRS--GRTGRAGK--KGKAIV 443 >UniRef50_B4WMN6 Primosomal protein N', putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WMN6_9SYNE Length = 889 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 17/103 (16%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTV-----ERMEIIRDLRLGEFDVLVGINLLREG 509 T+R+ DL +YL + ++ + D DT R + R R GE ++LVG +L +G Sbjct: 614 TQRVVNDLAKYLPQ----IKCIRFDSDTTRNKGAHRALLARFAR-GEANLLVGTQMLTKG 668 Query: 510 LDMPEVSLVAILDADKEGFL-------RSERSLIQTIGRAARN 545 +D+P+V LV ++ AD F+ R+ ++L Q GRA R Sbjct: 669 IDLPQVVLVGVIAADGLLFMPDFRASERAYQTLTQVAGRAGRG 711 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 27/250 (10%) Query: 323 PTLFDYLPAD-GLLVVDESH-------VTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P LFDY P + +++DE H + I Q D + +V + L D Sbjct: 172 PRLFDYDPNEFKAIIIDECHHAISDSYIKILQYFNALSKDSSDGIIVVGFSATLKRH-DA 230 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKS-----GGDVVDQV-VRPTG-----LLDPII 423 +PL + F +A + +S Y E S G +D V + TG L+ + Sbjct: 231 QPLD-KVFNTIAYEKDLISMVKEGYLSELSITKVEGAFSLDDVKLDKTGDYQLQSLESSV 289 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 VA V E R++ + L + K+ +DL E +G + ++ + + Sbjct: 290 NTAAVAELVLKTYLE-RKKVLGLKSSLFFCVNKQHVQDLCELFCANGIKAGFVSGNTPLL 348 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER +II++ G+ +VL+ N+ EG D+P + + +L K S L Q IGR Sbjct: 349 EREQIIKNFIDGKLNVLMNCNVFTEGTDIPNIDSIFLLRPTK-----SRPLLSQMIGRGL 403 Query: 544 RNVNGKAILY 553 R +GK Y Sbjct: 404 RLHSGKTKCY 413 >UniRef50_C2M4N3 Primosomal protein N` n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M4N3_CAPGI Length = 818 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 15/109 (13%) Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERM----EIIRDLRLGEFDVLVGINLLREGL 510 T+++ E+L ++ + R D+DT + +II GE D+LVG ++ +GL Sbjct: 579 TEKVEEELLQFFP----KARIERMDMDTTKGKYGFEKIIHHFERGETDILVGTQMVSKGL 634 Query: 511 DMPEVSLVAILDAD----KEGFLRSERS---LIQTIGRAARNVNGKAIL 552 D P+V LV +++AD + F SER+ L GRA R G+ ++ Sbjct: 635 DFPKVGLVGVMNADLFLHQPDFRASERAFQLLSHIAGRAGRKEQGRVLI 683 >UniRef50_D1BXK2 DEAD/DEAH box helicase domain protein n=6 Tax=Actinomycetales RepID=D1BXK2_XYLCX Length = 605 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%) Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 R +V TKR A +++ L + G +H D+ R + +R LR G+ DVLV ++ Sbjct: 322 RSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDVLVATDVAA 381 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 G+D+ +V+ V ++ ER+ + +GR R N G A+ + D Sbjct: 382 RGIDVDDVTHVVNYQCPED-----ERTYLHRVGRTGRAGNKGTAVTFVD 425 >UniRef50_B1ZW59 Primosomal protein N' n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZW59_OPITP Length = 745 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 7/66 (10%) Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE----GFLRSERS---LIQTI 539 E++ R G+ DVLVG ++ +GLD P V+LV ++DAD F +ER+ L+Q Sbjct: 540 EVLSQFRAGKIDVLVGTQMIGKGLDFPNVTLVGLIDADMSMHIPDFRANERTFQLLVQVA 599 Query: 540 GRAARN 545 GRA R Sbjct: 600 GRAGRG 605 >UniRef50_B9ZPI5 DEAD/DEAH box helicase domain protein n=2 Tax=Bacteria RepID=B9ZPI5_9GAMM Length = 627 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 +V TK ++ E L G + L+ D++ ER ++ DLR G DV+V ++ Sbjct: 248 AIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAAR 307 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+D+P ++ V DA + + R I GRA R G+AIL+ Sbjct: 308 GIDVPRITHVFNYDAPGDAEVYVHR--IGRTGRAGR--KGRAILF 348 >UniRef50_UPI0001924143 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001924143 Length = 597 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 42/75 (56%) Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V++ T +K A+ LTE+L V +HSD +ER +++ D R FDVLV +L+ Sbjct: 373 VIIFTNSKAKADSLTEFLLAEQFHVAAIHSDKTQLERNQVLSDFRENLFDVLVATDLMSR 432 Query: 509 GLDMPEVSLVAILDA 523 GLD+ V+ V D Sbjct: 433 GLDIVTVTHVINFDT 447 >UniRef50_A0D361 Chromosome undetermined scaffold_36, whole genome shotgun sequence n=4 Tax=Paramecium tetraurelia RepID=A0D361_PARTE Length = 813 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 32/181 (17%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII----------------EVRPVATQ 431 QT++ SAT N E+++ + +Q DPI+ EV V Sbjct: 612 QTLFFSATWPN-EVQRLANSLCNQ--------DPIMIQLGEQGLSVNKNIQQEVIIVYEN 662 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + +E+ R +++L+ K + L L HG + RYLH D+ ER +I+ + Sbjct: 663 KFEKFAELTDRLK-GQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVE 721 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G + L+ NL GLD+ +V +V D F + I IGR R G+A Sbjct: 722 FKSGAINCLITTNLASRGLDVSDVDVVINYD-----FPDTIEDYIHRIGRTGRAGKKGQA 776 Query: 551 I 551 I Sbjct: 777 I 777 >UniRef50_A4BBH5 Probable ATP-dependent RNA helicase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBH5_9GAMM Length = 448 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 23/169 (13%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQV----VRPTGLLDPIIEVRPVATQ-------VDDLL 436 QT+ +SAT + + D+++ ++P L + I + R + VD LL Sbjct: 178 QTLLLSATLKHRGVSSVAKDILNDAEFIQIKPEMLQENIRQQRIFSDGPAHKTKLVDWLL 237 Query: 437 S-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 S E Q+A +V T T+ AE+L L H +RV LH +I+ ER I+ R G Sbjct: 238 SHETFQKA------IVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDG 291 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 DV+V +L GLD+ V LV D + G R +GR R Sbjct: 292 VVDVIVATDLAARGLDVEGVDLVVNFDIAQSGDEHVHR-----VGRTGR 335 >UniRef50_B5JME8 Primosomal protein N', putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JME8_9BACT Length = 749 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 11/85 (12%) Query: 472 RVRYLHSDIDTVERMEIIRDL----RLGEFDVLVGINLLREGLDMPEVSLVAILDADKE- 526 + R + D DT+ + + R++ R G+ D+LVG ++ +GLD P V+LV ++DAD Sbjct: 525 KARIVRIDTDTMGKKHLFREILGEFRKGKIDLLVGTQMIAKGLDFPNVTLVGMVDADLSL 584 Query: 527 ---GFLRSERS---LIQTIGRAARN 545 F +ER+ L+Q GRA R Sbjct: 585 HVPDFRANERTFQLLVQVSGRAGRG 609 >UniRef50_D0WJ40 Putative ATP-dependent RNA helicase RhlE n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WJ40_9ACTN Length = 721 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L S +R+R RV+V T TK A++ T+ L + G +H+D +R + + R Sbjct: 255 LNSFVRERGGF--RVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFRE 312 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILD 522 G+ VLV ++L G+D+PEV V D Sbjct: 313 GKTHVLVATDVLSRGIDVPEVDYVINYD 340 >UniRef50_A0Z0M4 ATP-dependent RNA helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z0M4_9GAMM Length = 582 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 8/110 (7%) Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 E V+V T T+ + E L + G + L+ D+D R+ + DL+ G DVLV ++ Sbjct: 248 TEGVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDV 307 Query: 506 LREGLDMPEVSLVAILDA--DKEGFLRSERSLIQTIGRAARNVNGKAILY 553 GLD+ ++ V D D+E ++ I GRA R GKAIL+ Sbjct: 308 AARGLDVERITHVINYDVPFDEEAYVHR----IGRTGRAGR--KGKAILF 351 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 743 0.0 UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 742 0.0 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 710 0.0 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 704 0.0 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 693 0.0 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 691 0.0 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 685 0.0 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 677 0.0 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 675 0.0 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 672 0.0 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 668 0.0 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 661 0.0 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 660 0.0 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 659 0.0 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 644 0.0 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 607 e-172 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 549 e-154 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 487 e-136 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 443 e-123 UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular or... 392 e-107 UniRef50_C1N749 Exinuclease ABC subunits B and C-containing prot... 351 8e-95 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 337 9e-91 UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=La... 328 4e-88 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 321 7e-86 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 316 2e-84 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 312 3e-83 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 310 1e-82 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 309 2e-82 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 300 1e-79 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 299 3e-79 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 294 6e-78 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 294 7e-78 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 292 2e-77 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 292 3e-77 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 292 4e-77 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 290 1e-76 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 289 4e-76 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 279 2e-73 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 277 1e-72 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 273 1e-71 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 260 1e-67 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 259 2e-67 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 258 6e-67 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 256 2e-66 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 253 2e-65 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 250 2e-64 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 247 9e-64 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 247 9e-64 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 245 6e-63 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 243 1e-62 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 241 6e-62 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 240 2e-61 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 237 1e-60 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 237 1e-60 UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 ... 236 2e-60 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 235 3e-60 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 235 4e-60 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 235 4e-60 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 233 2e-59 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 233 2e-59 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 231 4e-59 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 227 1e-57 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 226 3e-57 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 225 4e-57 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 225 5e-57 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 222 4e-56 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 222 4e-56 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 220 2e-55 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 218 5e-55 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 218 8e-55 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 217 9e-55 UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamil... 215 5e-54 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 213 2e-53 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 211 5e-53 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 210 1e-52 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 210 2e-52 UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Str... 208 6e-52 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 206 3e-51 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 206 3e-51 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 205 4e-51 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 204 8e-51 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 203 2e-50 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 202 5e-50 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 201 5e-50 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 201 6e-50 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 201 1e-49 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 199 4e-49 UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Sti... 196 2e-48 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 195 4e-48 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 195 5e-48 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 195 5e-48 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 191 5e-47 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 191 7e-47 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 190 1e-46 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 190 2e-46 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 190 2e-46 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 189 3e-46 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 188 8e-46 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 187 1e-45 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 187 1e-45 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 186 2e-45 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 186 2e-45 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 186 3e-45 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 186 3e-45 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 184 1e-44 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 183 1e-44 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 179 2e-43 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 179 3e-43 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 179 4e-43 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 178 5e-43 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 178 6e-43 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 178 8e-43 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 176 2e-42 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 175 4e-42 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 175 4e-42 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 175 5e-42 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 175 5e-42 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 175 5e-42 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 174 7e-42 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 174 9e-42 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 171 6e-41 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 169 4e-40 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 168 5e-40 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 168 5e-40 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 168 6e-40 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 168 9e-40 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 168 9e-40 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 167 1e-39 UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Des... 167 1e-39 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 167 2e-39 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 166 2e-39 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 166 3e-39 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 165 4e-39 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 165 5e-39 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 163 2e-38 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 160 1e-37 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 160 2e-37 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 160 2e-37 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 158 5e-37 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 156 2e-36 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 156 4e-36 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 154 9e-36 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 152 3e-35 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 152 3e-35 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 152 4e-35 UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bac... 148 1e-33 UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Al... 147 1e-33 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 146 4e-33 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 145 5e-33 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 145 6e-33 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 144 1e-32 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 143 2e-32 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 143 3e-32 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 138 8e-31 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 136 3e-30 UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID... 135 5e-30 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 134 1e-29 UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa Re... 134 1e-29 UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Pir... 133 2e-29 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 133 2e-29 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 133 2e-29 UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 ... 133 2e-29 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 133 2e-29 UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukary... 132 4e-29 UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 ... 132 6e-29 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 131 7e-29 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 131 1e-28 UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hy... 129 3e-28 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 129 3e-28 UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Berm... 129 4e-28 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 128 7e-28 UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH 128 7e-28 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 127 9e-28 UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=ro... 127 1e-27 UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Po... 127 1e-27 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 127 1e-27 UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA 127 1e-27 UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukary... 127 2e-27 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 127 2e-27 UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=En... 127 2e-27 UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cr... 126 2e-27 UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Ta... 126 2e-27 UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii Re... 126 2e-27 Sequences not found previously or not previously below threshold: UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 209 2e-52 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 207 1e-51 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 199 3e-49 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 195 6e-48 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 194 1e-47 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 193 2e-47 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 192 4e-47 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 189 3e-46 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 188 9e-46 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 186 2e-45 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 185 6e-45 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 184 9e-45 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 184 1e-44 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 176 2e-42 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 174 1e-41 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 172 5e-41 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 169 2e-40 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 165 4e-39 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 163 3e-38 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 160 2e-37 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 158 6e-37 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 154 9e-36 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 154 1e-35 UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rho... 153 2e-35 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 153 2e-35 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 153 3e-35 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 153 3e-35 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 150 2e-34 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 149 3e-34 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 149 5e-34 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 147 2e-33 UniRef50_UPI000197B5E2 hypothetical protein BACCOPRO_02808 n=1 T... 146 3e-33 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 146 4e-33 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 145 5e-33 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 144 1e-32 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 142 5e-32 UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gem... 138 5e-31 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 138 6e-31 UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Des... 136 3e-30 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 136 3e-30 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 136 3e-30 UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Pre... 136 4e-30 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 136 4e-30 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 135 7e-30 UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Ta... 134 8e-30 UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Ana... 134 1e-29 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 133 2e-29 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 132 3e-29 UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Pre... 132 3e-29 UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Des... 130 2e-28 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 130 2e-28 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 129 3e-28 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 129 3e-28 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 129 4e-28 UniRef50_Q255X7 Transcription-repair coupling factor-superfamily... 128 6e-28 UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA 128 6e-28 UniRef50_UPI0001AEC3C5 transcription-repair coupling factor n=1 ... 127 1e-27 UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME 127 1e-27 UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales Re... 127 1e-27 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 127 1e-27 UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS 127 1e-27 UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetaz... 127 2e-27 UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7... 127 2e-27 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 127 2e-27 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 127 2e-27 UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillone... 126 2e-27 UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box fa... 126 2e-27 >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 743 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 423/670 (63%), Positives = 542/670 (80%), Gaps = 2/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS +V+QVVRPTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSD-QIVEQVVRPTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGR-GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + D + PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLRELFI 670 ++ +L+ + Sbjct: 665 EILRLKAQML 674 >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 446/671 (66%), Positives = 538/671 (80%), Gaps = 6/671 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP + Sbjct: 15 DSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPAL 74 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLAPNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQ Sbjct: 75 VLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQ 134 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY Sbjct: 135 MRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R+D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RF Sbjct: 195 TRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRF 254 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G Sbjct: 255 TVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMG 314 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE L Sbjct: 315 FCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENL 374 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G VV+QVVRPTGL+DP Sbjct: 375 VGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTGLIDP 433 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDID Sbjct: 434 AIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDID 493 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 494 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 553 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AAR++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ G Sbjct: 554 AARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIID-GV 612 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + G R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 613 YGGDVERDG----RSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 411/669 (61%), Positives = 509/669 (76%), Gaps = 2/669 (0%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA ++ A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K V D + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSV-DEVRFI 598 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +A + + G++ + S + L+ + ELE M + A L+FE AA++RD Sbjct: 599 TRVADARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRD 658 Query: 661 QLHQLRELF 669 QL ++R Sbjct: 659 QLFEVRTAL 667 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 371/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+ Sbjct: 12 DNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTL 71 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I++ Sbjct: 72 VIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDK 131 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ Sbjct: 132 LRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQF 191 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + Sbjct: 192 ERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHL 251 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 ++P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+G Sbjct: 252 VLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMG 311 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ L Sbjct: 312 YTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKML 371 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V+YGFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ VV+Q++RPTGLLDP Sbjct: 372 VDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTE-TVVEQIIRPTGLLDP 430 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI Sbjct: 431 EVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIK 490 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGR Sbjct: 491 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 550 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D++++ Sbjct: 551 AARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISIT- 609 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + E M+ K Q+ I +L+ M + A+ L+FE AAQIRD Sbjct: 610 ---------KTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDM 660 Query: 662 LHQLREL 668 + +L+ + Sbjct: 661 VLELKSM 667 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 356/698 (51%), Positives = 476/698 (68%), Gaps = 28/698 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 +PF++ + F P GDQP AI L +G+ +D L +QTLLGVTGSGKTFT+AN+I Q+ T Sbjct: 38 QQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTT 97 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E Sbjct: 98 LIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVE 157 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++Q Sbjct: 158 KLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQ 217 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 218 YDRNDVDLIRGTFRVRGDCVDVFTPYGEH-PIRVSFFGDEIEMIAEFDEVTGDTLSQYDA 276 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ + Sbjct: 277 LPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETM 336 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK T Sbjct: 337 GFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKIT 396 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S VV+QV+RPTGLLD Sbjct: 397 LVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQN-VVEQVIRPTGLLD 455 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 456 PRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDT 515 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+G Sbjct: 516 ATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMG 575 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ + Sbjct: 576 RAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFI 635 Query: 601 QNI-----AKTKAKGRGKSRPIVEPDNVPMD--------------------MSPKALQQK 635 Q +K + G + DN M + + + Sbjct: 636 QAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKI 695 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L+ M+ + +++FE AA++RDQ+ +++ + S Sbjct: 696 LGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLS 733 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 381/694 (54%), Positives = 499/694 (71%), Gaps = 32/694 (4%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+V+ Sbjct: 3 EFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLVM 62 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 A NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ +R Sbjct: 63 AHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDMLR 122 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY R Sbjct: 123 HSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYER 182 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND RG FR++G+V++I PA D + +R+E F +E+E + L DP+TG+I++++ + Sbjct: 183 NDLELVRGRFRLKGDVLEIVPAYEDRV-IRIEFFGDEIEAIRLIDPVTGEILNSLSALRV 241 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+GYC Sbjct: 242 YPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGYC 301 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 +GIENYSR L+GR GEPP L DY D LLVVDESHVT+PQI GMY GDRARK+ LV Sbjct: 302 NGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVLV 361 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG----------------- 405 ++GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S Sbjct: 362 DHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFYV 421 Query: 406 ---GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-----RQRAAINERVLVTTLTKR 457 G V++QV+RPTG++DP + VRP A QVDDLL EI R + ERV+VTTLTKR Sbjct: 422 QGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTKR 481 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 MAEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEVSL Sbjct: 482 MAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVSL 541 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 VAILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q + Sbjct: 542 VAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQLQ 601 Query: 578 YNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 YN +H ITP+ + KK + + I++ + + +P+ P+ I Sbjct: 602 YNRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLE-KAFQAAQEIPLSEIPE----LIG 656 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 +LE M + A+NLEFEEAAQ+RD++ +LR+ + Sbjct: 657 QLELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLG 690 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 373/680 (54%), Positives = 491/680 (72%), Gaps = 15/680 (2%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT++L Sbjct: 35 KFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTLIL 94 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 + NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I+++R Sbjct: 95 SHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKLR 154 Query: 124 LSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 L+AT A+L R DVVVV+SVS IYG+G+P + ++ + G + LRRL + Y Sbjct: 155 LAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSLYV 214 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ + Sbjct: 215 RNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDAYK 273 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 IYP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM ELG+ Sbjct: 274 IYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMRELGH 333 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 CSGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK LV Sbjct: 334 CSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNLV 393 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 EYGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLDPI Sbjct: 394 EYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLDPI 453 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IEVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+DT Sbjct: 454 IEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDVDT 513 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GRA Sbjct: 514 LERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA 573 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK-KVVDILALGQ 601 ARNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K K +++ A + Sbjct: 574 ARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAGTE 633 Query: 602 NIAKT----KAKGRGKSRPIVEPDNVPM--------DMSPKALQQKIHELEGLMMQHAQN 649 A++ + RP VE ++ M MS L++ I + LM + A+ Sbjct: 634 GFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAAKK 693 Query: 650 LEFEEAAQIRDQLHQLRELF 669 L+F EAAQ RD++ ++ EL Sbjct: 694 LDFIEAAQYRDEVLKMEELL 713 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 355/667 (53%), Positives = 477/667 (71%), Gaps = 8/667 (1%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L RRDV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L ++ Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNT-TSV 606 Query: 604 AKTKAKGRGK-----SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 A + + R K ++ V+ + +P+ + EL M + A +E+E+AA + Sbjct: 607 ADAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYL 666 Query: 659 RDQLHQL 665 RD++ +L Sbjct: 667 RDEIARL 673 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 376/696 (54%), Positives = 483/696 (69%), Gaps = 36/696 (5%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V+ Sbjct: 13 PFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVM 72 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++R Sbjct: 73 VQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLR 132 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY R Sbjct: 133 HSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVR 192 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V I Sbjct: 193 NDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYI 251 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GYC Sbjct: 252 FPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYC 311 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLVE Sbjct: 312 NGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVE 371 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V +Q++RPTGL+DP + Sbjct: 372 HGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGYV-EQIIRPTGLVDPQV 430 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT+ Sbjct: 431 VVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTL 490 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 491 RRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAA 550 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 551 RNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARE 610 Query: 604 AKTKAK------------------------------GRGKSRPIVEPDNVPMDMSPKALQ 633 A G G + P V+P ++P K L Sbjct: 611 DADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLP----AKDLA 666 Query: 634 QKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 I ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 667 DLIEQMSQQMHQAAADLQFELAARLRDEVGELKKEL 702 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 366/670 (54%), Positives = 479/670 (71%), Gaps = 6/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 + F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P + Sbjct: 6 EQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVL 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +++ NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE+ Sbjct: 66 LISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIER 125 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL AT ++L R DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L Sbjct: 126 LRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLH 185 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + R+D G FRVRG+VID+ P ++ ALRVE F +E+ERL LFD TG+I Sbjct: 186 FVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEY 244 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ EL Sbjct: 245 AFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKEL 304 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GYCSGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK Sbjct: 305 GYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTI 364 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLD Sbjct: 365 LVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLD 424 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P I VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I Sbjct: 425 PEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEI 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q G Sbjct: 485 KSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAG 544 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-AL 599 RAARNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L Sbjct: 545 RAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTT 604 Query: 600 GQNIAKTKAKGRG---KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 G A+ + + R + R +++ + + L EL M + A+++EFE+AA Sbjct: 605 GVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAA 664 Query: 657 QIRDQLHQLR 666 +RD++ +L Sbjct: 665 YLRDEVTKLE 674 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 365/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDED-GLRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL------ 597 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K+ + L Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 598 -ALGQNIAKTKAKGRGKS---------------------RPIVEPDNVPMDMSPKALQQK 635 +G + ++ + K R P D KA + K Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +LE M + A L+FEEAA+IRD + L Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSL 730 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 315/665 (47%), Positives = 451/665 (67%), Gaps = 11/665 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +++ +K G E D M + K + Q + M Q A+ +FEEA +IRD Sbjct: 601 I-LSEDHSKYYG------EKDLSQMKHNKKFIDQMV----RKMTQLAKANKFEEAIEIRD 649 Query: 661 QLHQL 665 L ++ Sbjct: 650 YLIEI 654 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 346/666 (51%), Positives = 459/666 (68%), Gaps = 5/666 (0%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+V Sbjct: 2 KEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 ++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I +M Sbjct: 62 ISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRM 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 122 RLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ T Sbjct: 182 RNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELT 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+GY Sbjct: 241 VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 C GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L+ Sbjct: 301 CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI 360 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 ++GFRLP A DNRPLK EFEAL Q +++SATPG E +S +V+Q++RPTGLLDP Sbjct: 361 DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIRPTGLLDPC 419 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I+T Sbjct: 420 IEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIET 479 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IGRA Sbjct: 480 IERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRA 539 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Q Sbjct: 540 ARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQE 599 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 + K A+ + +V + K + + L M A+ L FEEAA IRD++ Sbjct: 600 VKKDAARVQVAPLLRAADADVRTHAARK---KMVQALRLHMKVCARELRFEEAALIRDKI 656 Query: 663 HQLREL 668 QL+ Sbjct: 657 LQLQRQ 662 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 345/666 (51%), Positives = 464/666 (69%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P SD LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYSDAT-LRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S VV+Q++RPTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSR-RVVEQLIRPTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I DN LE LM + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMDN--------------EALEKLMWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 350/717 (48%), Positives = 469/717 (65%), Gaps = 68/717 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+V++ Sbjct: 4 FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ ++++ L Sbjct: 64 HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + R Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + +T + Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG+C Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK LVE+ Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV---------------- 408 GFRLPSALDNRPLKF EF Q +Y SATPG +EL D Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423 Query: 409 ----------------------------VDQVVRPTGLL-----------DPIIEVRPVA 429 D R T L+ +P I +RP+ Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+EI+ Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++NG+ Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ Q K A+ Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRS-------EQGQLKLYAE 656 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 657 DDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 325/669 (48%), Positives = 432/669 (64%), Gaps = 17/669 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ D LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + L Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHEDL-- 602 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + + S QKI EL+ M + A+ E+E AAQ R Sbjct: 603 ------SGHDYKQNAELYAAKA------SKNEYNQKIKELKKKMEEAAKKREYEVAAQYR 650 Query: 660 DQLHQLREL 668 D + +L + Sbjct: 651 DMIVELEAI 659 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 280/606 (46%), Positives = 385/606 (63%), Gaps = 23/606 (3%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ-RAILRRLAELQYAR 183 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + + Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 184 N--DQAFQRGTFRVRGE------VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 D F+RGT++ ++++P + +R+E V ++ D + + + Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEF--ASVGDGAVKDGMVVRAI 237 Query: 236 ST--------IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + I+P H+VT +R+ QA I+EEL R + LL K +E RL Sbjct: 238 QEGTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRLQ 297 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTI 344 QR D+ MM E G+CSG ENYSR L+GR G PP TL DY+ D LL+VDESHVT+ Sbjct: 298 QRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVTL 357 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 PQ+ MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL K+ Sbjct: 358 PQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGKA 417 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V+ ++RPT + DP IEVR Q+D+LL+E+R R +R LV TLTKR AEDL+ Sbjct: 418 EYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLSS 477 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L+AD Sbjct: 478 YLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNAD 537 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 EGFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN ++ Sbjct: 538 SEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNNC 597 Query: 585 TPQGLN 590 + N Sbjct: 598 VMKSTN 603 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 258/616 (41%), Positives = 358/616 (58%), Gaps = 43/616 (6%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 + + F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ Sbjct: 71 NGVRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVV 130 Query: 64 APNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 PNKTLAAQ+ E++ + E + VE FVS++ Y PE+Y S+ + EK ++++ ++ + Sbjct: 131 VPNKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDAL 188 Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID---QRAILRRL-A 177 R AT+A++E + VVVASVS +YGLG P Y+ L + +G + +L Sbjct: 189 RHRATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD 248 Query: 178 ELQYARN--DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP----LT 231 +L Y R +RG ++ A DD + ++ +E D Sbjct: 249 DLLYERVMPYMDIERGQYKTTA-------APDDDNCFTITIWPPYLES--ALDVRVRGDD 299 Query: 232 GQIVSTIPR-------FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 G +V+ R TI+P+ HY+TP ER+ +A+ IK EL + K L +E Sbjct: 300 GVVVACEARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEAD 359 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP--------ADGLLV 336 RL QRT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV Sbjct: 360 RLEQRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLV 419 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 DESHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATP Sbjct: 420 ADESHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATP 479 Query: 397 GNYELEKSGGD----VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 G+ E E GG +VD VVRP+G+LDP + V Q++ L + ++A I ER LV Sbjct: 480 GDIETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVC 539 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 LTK EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+ Sbjct: 540 VLTKADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDL 599 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P VSLVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR Sbjct: 600 PSVSLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRR 659 Query: 573 EKQQKYNEEHGITPQG 588 KQ K+N ++ + P Sbjct: 660 VKQHKHNVDNNLVPVT 675 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 366/661 (55%), Gaps = 85/661 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADL--QRPTMV 62 L + F P+GDQP AI + L +D L G TG+GKTF +ANVI + +PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMII---DQRAILRRLAE 178 +R AT+A++E +VVVVASVS +YG+G P Y+ L L + A+ RL E Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTE 248 Query: 179 -LQYA-------------RNDQAFQ---RGTFRV-----RGEVID---IFPAESDDIALR 213 L Y +D RG + RG + ++P +D L+ Sbjct: 249 GLLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPY-EDSPLQ 307 Query: 214 VELF--DEEVERLSLFDPL-TGQ--------IVSTI----------PRFTIYPKTHYVTP 252 +L V L P T + ++ + R T++P+ H++TP Sbjct: 308 FDLDKEGRLVGFLRT--PQGTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITP 365 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 ER+ A I EL R L N +E +RL QRT D+ ++NELG+C G E+YSR Sbjct: 366 PERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRH 425 Query: 313 LSGRGPGEPPPTLFDYL-------------------------PADGLLVVDESHVTIPQI 347 L GR GEPP TL DYL LLV DESHV +PQ+ Sbjct: 426 LGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQL 485 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSATPGN E E Sbjct: 486 RAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSR 545 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV LTK EDL YL Sbjct: 546 MVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLN 605 Query: 468 E-HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 606 EIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVP 665 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRREKQ+ +NE +GI Sbjct: 666 GFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIV 725 Query: 586 P 586 P Sbjct: 726 P 726 >UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular organisms RepID=A9U6S5_PHYPA Length = 804 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 241/374 (64%), Positives = 285/374 (76%), Gaps = 3/374 (0%) Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A+ I+ EL R + L KLLE QRL QRT++D+EMM E+G+CSGIENYS L+ R Sbjct: 4 ALVNIERELEERLEELRSQGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRER 63 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 G P TL DY P D L+VVDESHVT+PQI MY GDRARK LVE+GFRLPSALDNRPL Sbjct: 64 GATPYTLLDYFPDDMLIVVDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLT 123 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 FEEFE+ Q IYVSATPG YE+E +V+Q++RPTGLLDP+IEVRP Q+DDL+ E Sbjct: 124 FEEFESKVNQIIYVSATPGPYEIEHCD-TMVEQIIRPTGLLDPVIEVRPTEGQIDDLIGE 182 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 IR+R +ERVLVTTLTK+MAEDLT+YL+E G +VRYLHSDI T+ERM I+RDLRLG F Sbjct: 183 IRERIDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFH 242 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VL+GINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAARN G ++YGDKIT Sbjct: 243 VLIGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKIT 302 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 SM KAI ET+RRR Q YNE+HGITPQ + KKV D++ +A++KA G P Sbjct: 303 ESMDKAIKETQRRRTMQIAYNEQHGITPQTIRKKVRDVIE-ATKVAESKADPFGAC-PEC 360 Query: 619 EPDNVPMDMSPKAL 632 + V M + P+ L Sbjct: 361 DGLGVKMIVDPELL 374 >UniRef50_C1N749 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N749_9CHLO Length = 1800 Score = 351 bits (899), Expect = 8e-95, Method: Composition-based stats. Identities = 257/729 (35%), Positives = 356/729 (48%), Gaps = 155/729 (21%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLL-GVTGSGKTFTIANVIADLQRP--TMVLA 64 + F P+GDQP AI + D T L G TG+GKTF +ANVIA +P T+V+ Sbjct: 115 RAPFAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVV 174 Query: 65 PNKTLAAQLYGEMKEFFPENA-VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 PNKTLAAQ+ E++ + ++ VE FVS++ Y PE+Y S ++EK ++V++ +E +R Sbjct: 175 PNKTLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALR 232 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGM----IIDQRAILRRLAE- 178 ATKA+LE DVVVVASVS +YG+G P Y+ L G+ + Q A+ RRL E Sbjct: 233 HRATKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARRLTES 292 Query: 179 LQYA-----RNDQAFQRGTFRVRGEV---------IDIFPAESDDIALRVELFDEEVERL 224 L Y R D RG + +GE I ++P ++ + +++ + L Sbjct: 293 LLYEETKDARWDGV-SRGQWAWQGEADADVDGARRIAVWPPY-EEAPVEMDVAPD--GSL 348 Query: 225 -------SLFDPLTGQIVSTIP-------------------------------------- 239 S +D + + + Sbjct: 349 VGFGRMRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPP 408 Query: 240 -RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 R TI+P+ H++TP ER+ A E IK E+ AR L N +E RL QRT+ D+ ++ Sbjct: 409 DRVTIWPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLR 468 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-------------------ADGLLVVDE 339 ELG+C G E+YSR L GR G PP TL DY D LLV DE Sbjct: 469 ELGWCPGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADE 528 Query: 340 SHVTIPQIGGMYRGDRA------------------RKETLVEYGFRLPSAL--DNRPLKF 379 SHV +PQ+ M+ GDR+ R T E+ R+P AL P Sbjct: 529 SHVMLPQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATPGAI 588 Query: 380 EEFE-------------------ALAPQTIYVSATPGNYELEKSG--------------- 405 EE +A + I V + L S Sbjct: 589 EEAWCGGGGESESESSSDSEASVDVARREIRVMPSGEVAVLSSSSPPPPPPPPPPPPPPP 648 Query: 406 -----GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 +VD VVRP+G+LDP + V P A Q+ ++ +R+RAA E LV LTK E Sbjct: 649 SSSLSHSMVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCE 708 Query: 461 DLTEYLEE-HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 DL YL G R +LHS++ +R + ++ L+ GE DVLVG LLREGLD+P+VSLVA Sbjct: 709 DLAGYLNCLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVA 768 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK-ITPSMAKAIGETERRREKQQKY 578 +LDA GF+RS RSLIQ GRAARN G+ + D+ T +M +AI E +RRR KQ + Sbjct: 769 VLDAGVPGFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAH 828 Query: 579 NEEHGITPQ 587 N +HGITP+ Sbjct: 829 NAKHGITPK 837 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 211/549 (38%), Gaps = 56/549 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAP 65 + KP PE I L GLE+ Q + G++GS ++ A + P +V+ P Sbjct: 1 MRGLLKPLQAVPEFIG-LIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTP 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + A Q+ E+ P AV+ F P + + ++ +E RL Sbjct: 60 GEREACQMADEIAGLLPGAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQ 106 Query: 126 ATKAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++++ VV+A A + L P ++ + L L G + ++RRL + Y R Sbjct: 107 VLESLVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I I Sbjct: 167 GLVEGRGQFCLRGGILDVFPMTAHR-PVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIG 225 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + +K+E A+ L + + ++L ++ E GY + Sbjct: 226 AARELIVEDKAWENFRRALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFN 283 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIEN+ + T+ DYLPA ++VD+ I + R L+ Sbjct: 284 GIENFLPYFY-----REVITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSR 338 Query: 365 GFRLPSALDNRPLKFEEFEALA-----PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 G LPS L + + + IY S P + VRP Sbjct: 339 GRVLPSQF----LAYAGWSDIQGGLSRHPVIYSSLLPRQPDF-----------VRPQQTF 383 Query: 420 D-PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 P + + L EIR ++ + A+ + L++HG Y S Sbjct: 384 SLPWKAMPSFLGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASS 443 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 V R G +VLV + L G ++P+ L + + D G R + + Sbjct: 444 PEGHV---------RSG--NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKR 492 Query: 539 IGRAARNVN 547 +GR A V+ Sbjct: 493 VGRMAPFVD 501 >UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=Lactococcus lactis RepID=O66085_9LACT Length = 455 Score = 328 bits (841), Expect = 4e-88, Method: Composition-based stats. Identities = 190/286 (66%), Positives = 232/286 (81%), Gaps = 6/286 (2%) Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV 342 QRL QRT +D+EM+ E+GYC+G+ENYSR + GR GEPP TL D+ P D ++++DESH+ Sbjct: 176 AQRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHM 235 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 T+ Q+ GMY GDRARKE L YGFRLPSALDNRPLK EEFE+ Q +YVSATPG+YE+E Sbjct: 236 TMGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEME 295 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 ++ +V+Q++RPTGLLDP++EVRP+ Q+DDL+ EI +RA NERV VTTLTK+M+EDL Sbjct: 296 QTD-TIVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDL 354 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 T Y +E G +V+Y+HSDI T+ER EIIRDLRLG FDVLVGINLLREG+D+PEVSLVAILD Sbjct: 355 TAYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILD 414 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 ADKEGFLR+ER LIQTIGRAARN G ILY D MAKA+ E Sbjct: 415 ADKEGFLRNERGLIQTIGRAARNSEGHVILYSD-----MAKALDEN 455 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 321 bits (822), Expect = 7e-86, Method: Composition-based stats. Identities = 103/542 (19%), Positives = 226/542 (41%), Gaps = 60/542 (11%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + + + G++ + G++ S +++ I V +P +++ + Sbjct: 5 GLMEPIRKSSEFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVE 64 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +LY ++ + P+ Y P+ + +++ + RL + Sbjct: 65 ARKLYEDLCFYLPQ---------------VYYFPTKEVVFYNIDAISGDLRWERLKVIRE 109 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ML +++ V ++ + P +LY + ++VG +D + I +L + Y R + Sbjct: 110 MLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVE 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 +RG F +RG ++DI+ S + RVELF +EVE + F+ + + + + I+ Sbjct: 170 RRGQFSIRGGIMDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKE 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + RERI +IKE+LA+ + L EN +++ T +LE + E I++ Sbjct: 229 IIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESIDS 288 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + E + DY + ++VD+ ++ +Y + +E G L Sbjct: 289 FLPYFY-----EHTSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNVL 342 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP------- 421 P + E + + I ++D + + T +L P Sbjct: 343 PGQSKMLLDRSELIDEFNHREII----------------ILDAIAKSTKILPPKLIVNFT 386 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I + +++ L+ EI+ + + + ++L+ + T+ E L + L ++G Y Sbjct: 387 QITLNNYQGKLELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY------ 440 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +++ +++ GE + G L +G + PE+ + I +DKE F +++R I+ + Sbjct: 441 ----RDVVNEIKPGEVVITFGNQL--KGFEYPEIKISVI--SDKEVFGKAKRKNIRKTNK 492 Query: 542 AA 543 Sbjct: 493 KG 494 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 95/259 (36%), Gaps = 25/259 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAIN 446 + +SATP L S V D V T + V D L+ + +R+ + Sbjct: 778 VLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGG 837 Query: 447 ERVLVTTL---TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V K MA + + + E +V H + E II D ++D+LV Sbjct: 838 QVYFVYNRVENIKEMASYIAKLIPEG--KVAVAHGQMQERELEGIIMDFMQNKYDILVST 895 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+ V+ + I DADK G + L Q GR R A Y K Sbjct: 896 TIIETGMDIQNVNTMVIYDADKMGLSQ----LYQLRGRVGRTNR-IAYCYLSY---RKDK 947 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E +R K K E G G + D+ G G S+ V Sbjct: 948 VLKEVAEKRLKVIKEFTELG---SGFKIALKDLEIRGAG------NMMGSSQHG-HMAAV 997 Query: 624 PMDMSPKALQQKIHELEGL 642 D+ + L+ I ++G Sbjct: 998 GYDLYCRMLEDSIKLIKGE 1016 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 105/529 (19%), Positives = 201/529 (37%), Gaps = 40/529 (7%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L+ Q + L + G Q + G++ S +T +A + L P V+ + Sbjct: 6 LSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHS 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++ +++ P+ V F P+++ + + + + RL Sbjct: 66 IQQARRIAEDLQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLAQRLDV 112 Query: 127 TKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V VV ++ A+ L P + + L VG ++ I RL L Y R Sbjct: 113 LSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTP 172 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G + +RG ++D++P + + R+E FD+E++ + LFD T + R+ P Sbjct: 173 MVEAPGQYSLRGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGP 231 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + E + Q E+++E A R+ LL++ RL + LE ++E + G Sbjct: 232 AREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEG 291 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E + F +LF YL + ++ DE + L+E G Sbjct: 292 LEQFQNFFYP-----DQVSLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVHLLEAG 346 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LP+ + + E LA + A +++V + + Sbjct: 347 SVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKK---------IERVTVEDTIQFNAKNM 397 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 P ++D L E++ VL+ + + + + L ++G + + Sbjct: 398 HPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG------- 450 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 I +L G V VG+ L G ++ + LV I D + G + R Sbjct: 451 --IDAELHPG--TVAVGVGQLEAGFELVQARLVLITDLEIFGREKRPRK 495 Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 23/263 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S + D + T D ++ V + + +R+ Sbjct: 786 VLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELNRGG 845 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + L R + H + + +++ D GE+D+LV + Sbjct: 846 QVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVCTTI 905 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P V+ + + AD G + L Q GR R+ + T K + Sbjct: 906 IETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNRLAYAFF----TYRKDKVL 957 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G G + D+ G N+ + G + +V Sbjct: 958 TEVAEKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHG--------QMASVG 1006 Query: 625 MDMSPKALQQKIHELEGLMMQHA 647 D+ + L++ I EL+G + A Sbjct: 1007 FDLYCRLLEEAIQELKGAKPEEA 1029 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 110/518 (21%), Positives = 206/518 (39%), Gaps = 44/518 (8%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 E ++ +G+ G + + G+ G+ F N++ + + +++ + + Y ++ Sbjct: 11 EKTEKIMKGINQG-QNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLI 69 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA-MLERRDVV 137 PE V + P S+ + + R+ ++ + +++ V Sbjct: 70 RMMPEEKVLLY-------------PESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAV 116 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 ++ + +A+ P + K + L VG ID +L Y R + G F +R Sbjct: 117 LLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIR 176 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +IDIFP S + R+ELF +E++ + F+P T + ++ + I P + +I Sbjct: 177 GGIIDIFPL-SVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQI 235 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 +A+ IK + L ENN E L ++ LE + E G E + + Sbjct: 236 KKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYP- 294 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 TL DYLP D ++ D++ T +I G + + TL+E G LP+ N Sbjct: 295 ----ELHTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFL 350 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + + L S+T N EL ++V T V P ++D Sbjct: 351 SREALLDKLKDFNFVYSSTSINEELSWV--KDFEKVSFTTR------SVEPYHGKLDLFA 402 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +R+ RV VT + A + YL+E+ V + R E R+ Sbjct: 403 ERVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF--------RREEFSRE----- 449 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 ++V L EG + +++L + + G + +R Sbjct: 450 -RIIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRR 486 Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 37/265 (13%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-----RQRA 443 + ++ATP L + V D V T P P+ T + + E+ R+ Sbjct: 777 VLTMTATPIPRTLHMALVGVRDMSVIET----PPENRYPIRTYIREFNKELIRDAVRKEL 832 Query: 444 AINERVLVTTLTKRMAEDLTEYLEE-----HGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +V + ED+ E RV H ++ + ++ D ++D Sbjct: 833 GREGQV-YFVHNR--VEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYD 889 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ GLD+P V+ + + AD+ G + L Q GR R+ I Y + Sbjct: 890 VLVCTTIIETGLDIPNVNTIIVNRADQMGLAQ----LYQLRGRVGRSNR---IAYAYLLY 942 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPI 617 + + E +R + K G G + D+ G N+ + G Sbjct: 943 EK-DRVLPEVAEKRLRAIKEFTNLG---SGFKIAMRDLEIRGAGNLLGPEQHG------- 991 Query: 618 VEPDNVPMDMSPKALQQKIHELEGL 642 +V + K L+ + EL+G Sbjct: 992 -HIASVGFSLYCKLLEGAVEELKGK 1015 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 111/642 (17%), Positives = 240/642 (37%), Gaps = 57/642 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F ++ + I+ +EE L+ G+T S K ++ + +V+AP++ A Sbjct: 2 FTRQIEELKEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++ F NA + P + K + ++ + RL K + Sbjct: 62 RKIYEDLYSFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKL 107 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E VV S+ A G P DL+ K +G+ ++ +++ L + Y R Sbjct: 108 SEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEG 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+F +++ R+ELFD+E++ + FD +T + + I + I+P T + Sbjct: 168 KGQFSVRGGIIDVFSP-TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEF 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E I + + + L + + ++ + ++L Q+ + +E + E I Sbjct: 227 IAGAEHIKKGISAVSNYLNSYLSKIKKSKSGI-AEKLQQKFEEIMEEITESKRVENIYEL 285 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 286 IDYFY-----DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + + + + T E +V+ V R + Sbjct: 341 EQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSR---------SMHHFH 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ +++ +VL+ + + A L + L+ + + Sbjct: 392 GNMDILVDDLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSE 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D++ G V++ + +G + + I D + G + + ++ Sbjct: 443 YDIQKG--QVVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKIKN--------- 491 Query: 550 AILYGDKITPSMAKAIGETERR-REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 DKI IG KY I G+ + + I+ G + Sbjct: 492 ----ADKIKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGDTLFVPV 547 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + V P + P ++ + + + ++L Sbjct: 548 EQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKA-KKAVEDL 588 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 115/556 (20%), Positives = 228/556 (41%), Gaps = 61/556 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ G+ T+ G + S K + L + +A N Sbjct: 11 LIEPLFEIKEYTNVLENIKRGI-----PTTVTGPSESQKVHIACALCGHLGLKGIYIAYN 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A +++ ++ FF ++AV + PS + + + + R++A Sbjct: 66 EMQARKMFEDVSFFFGKDAV--------------FFPSKEIMLHDVEAKSYDSIYERINA 111 Query: 127 TKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 ++ +V S A+ L D L+ + ++++ +G ID ++L + Y R Sbjct: 112 LYRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVT 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + F VRG ++DIFP +D A+R+ELFD+EV+ + FD +T + V + TI P Sbjct: 172 TVEGKSQFAVRGGIVDIFPVNAD-TAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + P ME+I +L + K + N Q+L + D+E ++ Y +G Sbjct: 231 ARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAG 290 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ Y ++ E P + DY+ ++ L+ VDE +I + ++ +E G Sbjct: 291 MDRYIPYII-----EKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENG 345 Query: 366 FRLPSALD---NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 L + D + +++ + T+Y + P + E+ ++V +++ Sbjct: 346 QLLAGSFDIFFDCNYLWDKVKK-CKNTLYFTTLPSDDGQEEKRENIVSKLLNSYQ----- 399 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 ++ L +I RV++ + TK E L E L YL Sbjct: 400 -------GHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL------ 446 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E RD++ GE V++ +L G + P + V + + KE F + +++ R Sbjct: 447 ---EEPHRDIQPGE--VVITHGVLNRGFEYPGIGFVVV--SGKELFGQEKKT------RR 493 Query: 543 ARNVNGKAILYGDKIT 558 ++ GK I + Sbjct: 494 HKSAKGKKISVFTDLN 509 Score = 96.8 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 31/267 (11%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE---- 438 + ++ATP L S + D + +P E PV T V + E Sbjct: 776 MKTNIDVLTLTATPIPRTLHMSLVGIRDIST----IEEPPEERYPVQTYVMEYNDEVVRD 831 Query: 439 -IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLG 495 I + + +V R +++ RV H ++ E I+ G Sbjct: 832 AINREMSRGGQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFING 891 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 E+D+LV ++ GLDMP V+ + + DADK G + L Q GR R+ + Y Sbjct: 892 EYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQ----LYQLRGRVGRSNR---LAYA- 943 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKS 614 IT K + E +R + K E G G + D+ G N+ + G Sbjct: 944 YITYKKDKVLSEIAEKRLQAIKEFTEFG---SGFKIAMRDLQLRGAGNLLGPQQHG---- 996 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEG 641 D+V DM K L + ++EL G Sbjct: 997 ----HIDSVGYDMYCKLLAEAVNELRG 1019 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 99/519 (19%), Positives = 202/519 (38%), Gaps = 44/519 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F + + +E+ ++ + G S K I + + +V+ N A Sbjct: 4 FTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++K + + V + P+ D I + R+ K + Sbjct: 63 KEIYEDLKLY--DRNVYLY-------------PAKDIIFYSADIHGNAIVRERMRILKNL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQ 189 LER+ + VVA++ P YL + I+ + +L L Y R Q Sbjct: 108 LERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVEN 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + IYP + Sbjct: 168 PGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E + + ++ E L K E R+ Q + E + L +++Y Sbjct: 227 ILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSY 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 RF + + FDY D ++ DE + + ++ +E G+ L Sbjct: 287 IRFFY-----DKTCSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGYIL 341 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 PS +D E L+ + + +T + ++ + VD V+ V P Sbjct: 342 PSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAAKKKVDITVK---------SVNPY 392 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L+ +++ RV++ + ++ A L + L ++ Y + V+R+ + Sbjct: 393 NNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIY----SEDVDRIPV 448 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + +++V + G + P + LV I ++D G Sbjct: 449 -------KGEIVVMHGSVHRGFEYPLIKLVIISESDIFG 480 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 21/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S + D V +D + V D+++ E I + A Sbjct: 777 VLTLTATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGG 836 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V +++T + V + H + + +I+ + GE DVLV + Sbjct: 837 QVYYVHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTI 896 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + I +AD+ G + L Q GR R+ + + K + Sbjct: 897 IETGLDISNVNTMIIDNADQLGLSQ----LYQLRGRVGRSNRTS---FAFLM-YKRDKLL 948 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R + K E G G + D+ G G + + V Sbjct: 949 KEVAEKRLQAIKEFTELG---SGFKIAMRDLEIRGAG------NLLGAQQSG-HMEAVGY 998 Query: 626 DMSPKALQQKIHELEGL 642 D+ K L + L+G Sbjct: 999 DLYCKMLNDAVKGLKGE 1015 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 299 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 100/520 (19%), Positives = 198/520 (38%), Gaps = 41/520 (7%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L G + G S K + + P +V+ + T A ++Y Sbjct: 2 ELQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYD 61 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + F + P+ D + + R++ + ++E + Sbjct: 62 DFRNFTKQ---------------VWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQG 106 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID +RL + Y R Q G F Sbjct: 107 GVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDIFP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++ Sbjct: 167 IRGGIIDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKK 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 226 QLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 Query: 315 GRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + +Y P + ++ +DE + + R +E G+ LP Sbjct: 286 P-----DTVSFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQT- 339 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 EE A + + V T + +L + + + V + Sbjct: 340 ELLYPVEEVMARVQRPLTVMLTGLDQKLPGMKVNHKFSID--------VKNVNSYQNSFE 391 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI------DTVERME 487 L+ ++ + RV++ + ++ A L L E+G R D E + Sbjct: 392 ILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKD 451 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 ++ GE ++V L G + P + V I + D G Sbjct: 452 AHPKVKPGE--IMVTYGSLHRGFEYPLLKFVYITEGDMFG 489 Score = 82.5 bits (202), Expect = 5e-14, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 31/262 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-----IRQRA 443 + ++ATP L S + D V L +P ++ P+ T V + E I + Sbjct: 787 VLTLTATPIPRTLHMSLAGIRDMSV----LEEPPVDRTPIQTYVMEYNEEMVREAINREL 842 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A N +V +++ ++ + H + E I+ D GE DVLV Sbjct: 843 ARNGQVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLV 902 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P + + I DAD+ G + L Q GR R+ Sbjct: 903 STTIIETGLDIPNANTMIIHDADRMGLSQ----LYQLRGRVGRSNRTSYAFLMY----RR 954 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 K + E +R + + E G G+ + D+ G N+ + G Sbjct: 955 DKLLKEEAEKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HM 1003 Query: 621 DNVPMDMSPKALQQKIHELEGL 642 + V D+ K L + + L+G Sbjct: 1004 EAVGYDLYCKMLNEAVLALKGE 1025 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 111/541 (20%), Positives = 213/541 (39%), Gaps = 44/541 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +P + PE I L+ GL Q + G++ + K+F IA ++ +++ +++ + A Sbjct: 13 LQPLINTPEFID-LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEA 71 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A L ++K P+ V F P+ + + ++ I + R+ +++ Sbjct: 72 AGLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRMEVLESL 118 Query: 131 LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + V++A V A+ LG + L L VG + ++ L E Y R + Sbjct: 119 CRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVES 178 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG ++DI+P + +RVE FD+EV+ + +F+P T + + + I+P Sbjct: 179 HGQFSVRGGILDIYPITGIN-PVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREM 237 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V + +A + + +E RR+ L + + L R + L+ +++ Y IE Y Sbjct: 238 VVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNL-SRCEEVLDNISQAKYFDSIEQY 296 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + TL +Y+ A+ L++VDE + R L++ G LP Sbjct: 297 LPYFY-----DEDITLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMKAGRVLP 351 Query: 370 SALDNRPLKFE--EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + + IY S P L +S V P+ ++ Sbjct: 352 GQFKGYT-DWAGIHKQITGFRAIYFSFLPRQASLWRSCNTVNF----------PVKTMQN 400 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +V+ L EIR V++ A L L ++ YL D+ + Sbjct: 401 FMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSEYPHLN 460 Query: 488 IIRDL---------RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + D+ G +++ L G ++ L I + + G + Q Sbjct: 461 VQEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPSVQRQR 520 Query: 539 I 539 + Sbjct: 521 V 521 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 25/267 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S V D + T D I V + ++ E IR+ Sbjct: 805 VLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVREAIRRELGRGG 864 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + +L+ H + ++ D +FD+L+ + Sbjct: 865 QVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDILLCTTI 924 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + + DAD G + L +GR R GDK+ + Sbjct: 925 IETGLDIQNVNTLIVKDADYMGLAQ-LYQLRGRVGRTNRLAYAYCTFRGDKV-------M 976 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G G + D+ G NI + G V Sbjct: 977 SELAEKRLSAVREFTEFG---SGYKIAMRDLEIRGAGNILGPEQHG--------HIAAVG 1025 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLE 651 D+ + L++ + LE ++A+ +E Sbjct: 1026 FDLYCRLLEEAV--LEAKGGENAKPIE 1050 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 294 bits (752), Expect = 7e-78, Method: Composition-based stats. Identities = 102/513 (19%), Positives = 201/513 (39%), Gaps = 45/513 (8%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 ++ + +E + L G+ + K+ + +++ ++ N+ A Q+Y ++K + Sbjct: 18 QVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAG 77 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 + A+ ++PS + + + + ++ R+ A + +LE D +VV ++ Sbjct: 78 DRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETILEGSDCIVVTAI 123 Query: 143 SAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 L P Y K + VG +D ++ L Y R D +RG F +RG++ID Sbjct: 124 DTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIID 183 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 IFP+ S ++ +RVELF +E++ + F P T + + I +Y + + Sbjct: 184 IFPS-SAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVIL 242 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ ++ K L + K + L + E + LG G+E ++ E Sbjct: 243 KLNQDYKNISKKLNQAAK----ENLKNSLEELSEKLRSLGNFRGVEKLLPYIY-----EK 293 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L Y + L ++DE + G + + LVE G P E Sbjct: 294 TTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFPGQGKLILSYGEV 353 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 + L + I + + ++++ RP + +++ L EI++ Sbjct: 354 IDRLKEKRIVTLSLLPKAIKDFPPKEIINFDTRP---------MASFHGKLELLGKEIQR 404 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++ + TK L E+L E YL + +DL GE +L Sbjct: 405 LQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK---------QDLVTGEVVILS 455 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 G LR G + + I D + G + +R Sbjct: 456 GN--LRRGFEYVKNKFAVITDYEIYGVHKQQRK 486 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 38/274 (13%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-----DDLLSEIRQRA 443 + ++ATP L S + D V + DP E PV T V ++ I + Sbjct: 776 VLTLTATPIPRTLHMSMIGIRDMSV----IEDPPEERFPVQTYVLGYSESMVVDAISREL 831 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A +V + + L+E RV H + E +I+ + GE+D+LV Sbjct: 832 ARGGQVYYVYNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILV 891 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPS 560 ++ G+D+ V+ + I DADK G + L Q GR R+ G A L +K Sbjct: 892 STTIIETGMDISNVNTIIIQDADKLGLSQ----LYQLRGRVGRSYRQGYAYLMYEK---- 943 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 K + E +R K K E G G + D+ G N+ + G Sbjct: 944 -DKILSEVAEKRLKAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGGEQHG--------H 991 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + D+ K L++ + E+ G + +FE Sbjct: 992 MAAIGYDLYVKLLEETVGEMRGEYTE-----KFE 1020 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 105/532 (19%), Positives = 208/532 (39%), Gaps = 47/532 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + V + +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QLY +++ + + P+ D I + R+ + Sbjct: 63 RAEQLYSDLRFYSRD---------------VYMYPAKDILFFSADVHGNAITRKRMDVLR 107 Query: 129 AMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ +VA+V A++ Y+ K ++++ +D + ++L+ L Y + D Sbjct: 108 RLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 168 EEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAG 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V ++RI + + +I+ EL + L E+ R+ + E + E G++ Sbjct: 227 EIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVD 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +Y + +L D LP D +++DE+ + G R+ +E G+ Sbjct: 287 SYVDYFY-----SDTVSLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYV 341 Query: 368 LPSALDNRPLKFEEFE-ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 LP ++ + + A + A G D++ EV Sbjct: 342 LPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGR----------DDRISYAHKTEIECHEVH 391 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D L+++IR VL + + A+ + + L + YL SD D V Sbjct: 392 SYRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYL-SDADKVLTP 450 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 I + LR G +P + LV + + D S Q Sbjct: 451 REIAAMA----------GRLRSGFMIPAMHLVVVSEGDVFSSRSSSGKRTQK 492 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 94/261 (36%), Gaps = 31/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA----- 443 + ++ATP L S + D + L + ++ RP+ T V + E+ + A Sbjct: 781 VLTLTATPIPRTLHMSLVGIRDMSL----LEEAPVDRRPIQTYVMEYDKELAREAIAREL 836 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A +V E T +++ + H +D +I+ E DVLV Sbjct: 837 ARQGQVYYVYNRVNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLV 896 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-AILYGDKITPS 560 ++ GLD+P + + I DA+ G + L Q GR R+ A ++ Sbjct: 897 CTTIIETGLDIPNANTIIIHDANNFGLAQ----LYQLRGRVGRSDRSAFAFMFY-----R 947 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K I E +R + K + G G+ D+ G +++ Sbjct: 948 RNKVISEVAEKRLRAIKEYTDLG---SGVKISKADLNIRGAGSVLGESQSGNYEV----- 999 Query: 621 DNVPMDMSPKALQQKIHELEG 641 V D+ K L + E G Sbjct: 1000 --VGYDLYCKMLNDAVRERRG 1018 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 99/531 (18%), Positives = 193/531 (36%), Gaps = 52/531 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L+ G + G S K + + +V+ + T A ++Y Sbjct: 7 ELQEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTYDDTRAKEIYD 66 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 +++ F P+ D + + R++ + ++E R+ Sbjct: 67 DLRSFT---------------SRVWLYPAKDLLFYSADIHGNLMARQRIAVLRRLMEDRE 111 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID RL + Y R Q G F Sbjct: 112 GVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQFS 171 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++DIFP ++++ +R+EL+D+EV+ + FD + + V + TIYP V + Sbjct: 172 IRGGIVDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAEVVLSAD 230 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ ++E G++ Y R+ Sbjct: 231 QLAAGIRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIRYFC 290 Query: 315 GRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + +Y P + ++ +DE + + R +E G+ LP Sbjct: 291 P-----DTVSFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLEKGYLLPGQT- 344 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 E A + V T + +L G V + + V + Sbjct: 345 ELLYPAAEILARMQKPYAVMLTGLDQKL--PGMKVNQKFSID------VKNVNSYQNSFE 396 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV---------- 483 L+ ++ + RV++ + ++ A L L E+ R Sbjct: 397 ILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGESGNAGGEGAGS 456 Query: 484 -------ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +R +R GE +LV L G + P + V I + D G Sbjct: 457 ADTGNPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMFG 505 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 31/265 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-----IRQRA 443 + ++ATP L S + D V L +P ++ P+ T V + E I + Sbjct: 803 VLTLTATPIPRTLHMSLAGIRDMSV----LEEPPVDRTPIQTYVMEYNEEMVREAINREL 858 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A N +V +++ ++ + H + E I+ D GE DVLV Sbjct: 859 ARNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLV 918 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + I DAD+ G + L Q GR R+ K Sbjct: 919 STTIIETGLDISNANTMIIHDADRMGLSQ----LYQLRGRVGRSNRTSYAFLMYK----R 970 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 K + E +R + + E G G+ + D+ G N+ + G Sbjct: 971 DKLLREEAEKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HM 1019 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQ 645 + V D+ K L Q + L+G ++ Sbjct: 1020 EAVGYDLYCKMLNQAVLALKGETLE 1044 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 292 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 110/508 (21%), Positives = 191/508 (37%), Gaps = 41/508 (8%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +++ L EGL+ +Q + G+ S +T +A + RP +++ P++T A ++Y +M Sbjct: 13 PSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDML 72 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 F + V F Y + S D R++A K + ++VV Sbjct: 73 SVFKDEDVYLFPGKELLYYSNLFSESGDA------------AAQRIAAMKRLARGDNIVV 120 Query: 139 VASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 VA+VSA+ P + + L I +L +L + Y R + +G VRG Sbjct: 121 VATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRG 180 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++DI+PA + R+E F E V+ + FDP + + + + P V Sbjct: 181 GIVDIYPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERK 239 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A+ + +E A + L + + E +L +R +E + E Y G+E Y + Sbjct: 240 NALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFY--- 296 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + + DY P + LL +DE + R + TL G + D Sbjct: 297 --DQAAKITDYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFAQGDLPARSADMVWS 354 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 L Q + S + R L V Q D Sbjct: 355 YKSLLANLLTQLVAFSLF--------AHSSDHHPYRRSVSLSAKP--VPKFLGQWDLFGE 404 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ Q RV++ T +++ + + E L E Y S+ D +R Sbjct: 405 EVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLAQRS----------- 453 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADK 525 V + L G +PE+ LV + + D Sbjct: 454 -VTLLHGSLESGFVLPEIKLVLLTEQDI 480 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 86/229 (37%), Gaps = 19/229 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S V D V T D V D L+ E R Sbjct: 778 VLTMTATPIPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGG 837 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + R A L E + E R+ H + +++ GE+DVL+ Sbjct: 838 QVYFVHNRVQSINRWAAKLQELMPE--VRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLST 895 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P V+ + I DADK G + L Q GR R+ I Y +T K Sbjct: 896 TIVEAGLDIPNVNTIIIQDADKFGLAQ----LYQLRGRVGRSNR---IAYA-YLTYQKDK 947 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGR 611 + E +R + K E G G + D+ G NI + G Sbjct: 948 VLTEVAEKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNILGPEQHGF 993 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 114/517 (22%), Positives = 199/517 (38%), Gaps = 53/517 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + A++ GL Q +LGV G + A + D P +++ P + AA L + Sbjct: 10 ETPALKTAVSGLAR-YKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGEREAAALADD 67 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + P + F ++ + + + + I R+ +A++ + Sbjct: 68 LVTLLPGRGIFVFSAW-------------ELLPVQVLAYSREIGVRRMRVLEALITGTNP 114 Query: 137 VVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VV+A V A+ L P + + + L G A+ RL + Y Q G F + Sbjct: 115 VVIAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDTAGQFSI 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG + D+FP + +RVE F +E+ L FDP T + + R T+ P T V + Sbjct: 175 RGGIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATELVVEDDA 233 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +E + E + L + +RL + + L ++ + GIE+ + Sbjct: 234 WEAGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDLLAYFYP 293 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR-KETLVEYGFRLPSALDN 374 + TL DYL G++ V E + + RA L+E G LP Sbjct: 294 QA-----ATLMDYLGPAGVVAVTEPDRVAE-VAESFAQHRAHGYAVLLEQGRLLPGQFRL 347 Query: 375 RPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + + F ALAP +T+Y+S +S ++ +V G L + Sbjct: 348 YLDREQLFAALAPFRTVYLSLFGRVGAFSRSDREIRFEVRELPGNL----------GRTG 397 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +L EIR+R +RV++ T A L L + G + Sbjct: 398 AVLGEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAA---------------FQAYE 442 Query: 494 LGEF---DVLVGINLLREGLDMPEVSLVAILDADKEG 527 LG+ V VG+ L +G ++ E L + + + G Sbjct: 443 LGQVQPGQVAVGVGRLNKGFEIAESQLAVLTEREIYG 479 Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 27/269 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 I ++ATP L S + D + T LD V + L+ E R Sbjct: 775 VITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGG 834 Query: 449 VLVTTLTKRMA-EDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + + +L+E R H + + +++ D G +DVLV + Sbjct: 835 QVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTI 894 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + + +AD+ G + L Q GR R+ A Y T + + Sbjct: 895 IETGLDITNVNTLVVKEADQLGLAQ----LYQLRGRVGRSNR-LAYAYF---TFRRDRLL 946 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 GE +R + + + G G D+ G N+ T+ G V Sbjct: 947 GEAAEKRLRAIRDFTDFG---SGFRLAKRDLEIRGAGNLLGTEQHGN--------ISVVG 995 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE 653 +M + L++ + EL+G A EFE Sbjct: 996 FEMYCRLLEESVRELKGE----APPEEFE 1020 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 289 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 107/544 (19%), Positives = 206/544 (37%), Gaps = 51/544 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF + + E ++ G + K+ I ++ +++ + Sbjct: 3 AFTEPLLSLAGFEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +LY E F E Y PS D + + R+ A KA Sbjct: 62 AKELYDEYSFFDKE---------------VVYYPSKDVLFYQSDIRGNLLTAERIRALKA 106 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + E+ V +V + A+ P + + +L L G ++D + I L + Y + Q Sbjct: 107 IREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQ 166 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F VRG ++D+FP +++ +R+EL+ +E++ + FD + + + I R +IYP Sbjct: 167 TMGQFSVRGGILDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAE 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V E ++++K E L + K E R+T E EL +G++ Sbjct: 226 LVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMDA 285 Query: 309 YSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + G + DY P+D L+ DE Q + + G+ Sbjct: 286 FLSYFFDERVG-----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGYI 340 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP ++ F E E +A Y + + +G + G+ V P Sbjct: 341 LPGQMNGL---FTEKEIVAKLGKYSCIALAALDNKANGLH----QLGSYGI--HCQSVSP 391 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L+ ++++ RV++ + ++ A+ L+E + + G Y + Sbjct: 392 YNNSFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYTEN--------- 442 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 D L E ++V +R G + P + I ++D G + ++ + R Sbjct: 443 --YDHELFEGQIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKK-------KRHRTYE 493 Query: 548 GKAI 551 G+ I Sbjct: 494 GEKI 497 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 23/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S + D V +D + V D+L+ E I + A N Sbjct: 777 VLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEYNDELVREAINRELARNG 836 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V R D+T L+E V + H + E I+ GE DVLV + Sbjct: 837 QVYYVYNKVRDIADITAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDVLVSTTI 896 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + I DAD G + L Q GR R+ Y + K + Sbjct: 897 IETGLDISNVNTMIIHDADNMGLSQ----LYQLRGRVGRSNRT---AYAFLM-YRRNKML 948 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R K + G G + D+ G N+ + G + V Sbjct: 949 KEVAEKRLAAIKEYSDLG---SGFKIAMRDLEIRGAGNLLGAEQSG--------HMEAVG 997 Query: 625 MDMSPKALQQKIHELEG 641 D+ K L + + E +G Sbjct: 998 YDLYCKMLSEAVKEAKG 1014 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 119/616 (19%), Positives = 219/616 (35%), Gaps = 64/616 (10%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 Q + G++GS +A + RP ++ + A LY ++ + V Sbjct: 25 RKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQVYI 84 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYG 147 + P + + A + + R +AML ++ V + S+ SA Sbjct: 85 Y-------------PEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAVYIFSLKSAKEK 131 Query: 148 LGDPDLYLKMMLHLTVG-MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAE 206 L + + L+L VG + I +L L Y Q+G F RG +ID+FP Sbjct: 132 LSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVA 191 Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE-RIVQAMEEIKE 265 S+ + +R+E FD+E+E + FD T + + + P + V + QA+ ++ Sbjct: 192 SE-LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTR 250 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 E ++ L+++ + L +R DL + Y + + G T+ Sbjct: 251 EFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYG----TI 306 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+LP + L VDE + E+L+E G LP N E+ + Sbjct: 307 IDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEEGKILPGE-SNLFYSIEDVLSG 365 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 P SA L ++ + V Q + + + Q D L E++Q Sbjct: 366 NPFDTIYSAN----FLRQNPFENVSQATNMS-----VKSMNQFYGQWDFFLKEMKQWMNN 416 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N R+++ + T A L E L++ + E V++ + Sbjct: 417 NYRIILFSPTPESARTLYENLKKEEIGATIVEKGNTKTEN------------QVVIAVGD 464 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 L+ G + E L I D G + + + S KA+ Sbjct: 465 LKSGFILQESKLAVITYGDLWGHQKKKIRSRKR-------------------DKSEDKAV 505 Query: 566 GETERRREKQQKY--NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 ++ R + + Y +E+HGI K + + A P + D + Sbjct: 506 KVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSLYVPTEQIDEI 565 Query: 624 PMDMSPKALQQKIHEL 639 + + K++ L Sbjct: 566 QKYVGKEGKPPKLYSL 581 Score = 79.1 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 107/285 (37%), Gaps = 33/285 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + ++ATP L S V D V P G V + Q+ + + + + Sbjct: 787 VLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQL--IREAVNREISR 844 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V V + + + + + +V H + + ++ D G++DVLV Sbjct: 845 EGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVST 904 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 +++ GLD+ V+ + I +AD+ G + Q GR R+ A Y +T K Sbjct: 905 SIVEAGLDIQNVNTIIIYNADRMGLSQP----YQLRGRVGRSNR-MAYAY---LTYQKDK 956 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + + +R K K E G G + D+ G NI + G + Sbjct: 957 VLTQEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNILGPEQHGHIMA-------- 1005 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRE 667 V DM K L+ I E+ EE +I+D ++ + Sbjct: 1006 VGFDMYTKMLKDAIKEISQESQTQ------EETTKIQDDKTEVEK 1044 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 277 bits (707), Expect = 1e-72, Method: Composition-based stats. Identities = 111/528 (21%), Positives = 212/528 (40%), Gaps = 52/528 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + GL +GL Q L G++GS ++ + + + +P ++ N A ++ ++ Sbjct: 14 FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 + +V + P ++ + A + + RL + +VVA Sbjct: 74 LEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVA 120 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+AI + P +++ + + VG I+ + RL E+ Y R+D G F +RG + Sbjct: 121 PVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGI 180 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 IDI+P S++ +R+ELFD EV+ + F+ + + T+ I P + E +A Sbjct: 181 IDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARA 239 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 ME+I LAA K L + + ++ L D E ++E + Y + Sbjct: 240 MEKIDSGLAASLKKLKADKQ---KEILHANISHDKERLSEGQTDQELVKYLSYFY----- 291 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 E P +L DY P + LL++DE + + + L+E G L + L F Sbjct: 292 EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKIL----HDIRLSF 347 Query: 380 EEFEALAPQT---IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + +A Q +Y S L +V +G +++ Q++ L Sbjct: 348 SFQKIVAEQKRPLLYYSLF-----LRHVHHTSPQNIVNVSGR-----QMQSFHGQMNVLA 397 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 E+ + N V+ K + L+ L ++ S + L G+ Sbjct: 398 GEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSK----------KALVQGQ 447 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 ++ G L+ G ++P + L I + + ++ Q + A R Sbjct: 448 VYIMEG--ELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAER 493 Score = 81.8 bits (200), Expect = 9e-14, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 26/269 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S V D V T + ++ V + I + A Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGG 833 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E + + +V Y H + E ++ GE DVLV + Sbjct: 834 QVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTI 893 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + + DADK G + L Q GR R+ + Y T K + Sbjct: 894 IETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGRVGRSNR---VAYA-YFTYRRDKVL 945 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + K E G G + D+ G N+ + G D+V Sbjct: 946 TEVAEKRLQAIKEFTELG---SGFKIAMRDLTIRGAGNLLGAQQHGF--------IDSVG 994 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE 653 D+ + L++ I E +G A+ +FE Sbjct: 995 FDLYSQMLKEAIEERKG---DTAKTEQFE 1020 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 112/521 (21%), Positives = 202/521 (38%), Gaps = 47/521 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 E + GL G L G+ K +A ++ + P +V+ P A +L + Sbjct: 12 DSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAAD 70 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ F+P ++ Y+P S+ + + + + RL ++ R Sbjct: 71 IESFWPGEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVLTNLVSGRTR 117 Query: 137 VVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 ++V V + L PD + L VG IID+ A+L++L L Y R + G V Sbjct: 118 ILVVPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAV 177 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG +IDIFP +++ +R+ELF +E++ L FDP++ + V+ + + P V P Sbjct: 178 RGGIIDIFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPA-QEVLPPPD 235 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + +E +K E + L + + + L R Q + M+ + G F Sbjct: 236 LGPGLETLKAEFSQTYATLRQ-RQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYP 294 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 R TLF+Y LLV+D+ + ++ + ++ G LPS Sbjct: 295 R-----QATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGLALPSQGQA- 348 Query: 376 PLKFEEFEALA--PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L + E L Q +Y S P RP + + ++ Sbjct: 349 YLDSADLERLWQRYQRLYFSLLPRRVPGSNP---------RPAVGISAQT-IPAFQGKLG 398 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 ++ E+ + R+++ L + L E G + E + + Sbjct: 399 LVVEELTRWRREGYRIILMVADPNRVVALRQALAEQGIEA------LTHPEARDTL---- 448 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 G +V++ LR+G PE+ L I D + G +R R Sbjct: 449 -GRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRRPRR 488 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 92/258 (35%), Gaps = 23/258 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S V D + T D ++ V + + IR+ Sbjct: 778 VLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGG 837 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + + ++++ R H + E ++ D G +DVLV + Sbjct: 838 QVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTI 897 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + ++D G + L Q GR R A Y T K + Sbjct: 898 VENGLDIQNANTLIVDESDNFGLAQ----LYQLRGRVGRTNR-LAYAYF---TYRPDKVL 949 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 GE +R + G G + D+ G N + G V Sbjct: 950 GEIAEKRLAAIREFTAFG---SGYKIALRDLQIRGAGNFLGPEQHG--------HMVAVG 998 Query: 625 MDMSPKALQQKIHELEGL 642 D+ + L++ + +L+ Sbjct: 999 FDLYCQLLEEAVRKLKEQ 1016 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 93/524 (17%), Positives = 203/524 (38%), Gaps = 45/524 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + + + IR + L++ Q + G+TGS + + V +RP + + N Sbjct: 3 GLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYH 62 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A +LY ++ + + + P+ + + + + + R+ A Sbjct: 63 AQKLYDDLLSLMDVDRLFLY-------------PADELISSELSISSPELRGQRVEALDF 109 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L + +V+ V+ + + P L+ + + G ID + ++L + Y + Sbjct: 110 LLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVN 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F VRG +IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T Sbjct: 170 TPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATE 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + + ++ +++++ L E ++Q L + + DLEM+ SG++ Sbjct: 229 IILDQSYYPDIVKRLEKKMMLTLNELKEQ---EDKQALIENLEEDLEMLR-----SGVKP 280 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 F P +LFDYLP + +++DE + + R + + + + Sbjct: 281 DMFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETV 340 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + K + E IY+S ++ +V +++ Sbjct: 341 RDVQVSHSFK-KLLEGNHSPKIYLSLF--QKQMASMRVSKTTNIV--------YKQMQQF 389 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 Q++ L +E+ N V++ AE + + L ++ L + D Sbjct: 390 HGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP----- 444 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 + G ++G + G ++P + I + + + Sbjct: 445 ----KYGMVQFVIGT--FQNGFELPLAKVAIISETELFNKKNQK 482 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 123/617 (19%), Positives = 242/617 (39%), Gaps = 68/617 (11%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + G+ + K I + L V+A ++ A + ++ F V Y+ Sbjct: 32 IVGGIIEAAKGHLIYTLADFLDTCPFVIASSEEEAEVVKEDLAFLFGSENVIYY------ 85 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYG-LGDPDLY 154 PS D + I + R+ A A+++ + ++V ++ A+ L D + Sbjct: 86 -------PSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEF 138 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 ++ + + +G +D +++ +L E Y R + G F +RG ++DIF +++ +R+ Sbjct: 139 IRAQIVIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIFSP-ANNTPIRM 197 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 EL+D E++ + F P+T + + I R IYP + PRE++++A+ I++EL A VL Sbjct: 198 ELWDTEIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVL 257 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E+ R+ + T D+E + +G+ ++ L +LFDYL Sbjct: 258 RESGAKSAANRIKENTNEDIESI-----VNGLNIETQVLYAPFCDMETASLFDYLEYKKT 312 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 + + + ++ ++ ++ +EYG LPS + EE A + Y+ Sbjct: 313 IFITDIKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMV-KFIFNREEIIAKVFEKNYIGF 371 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 P + + + ++ + E+ + +++Q A + + Sbjct: 372 MPFLASDDMATTKNILEI--------RLNEINSNYKGLKIFEQDLKQYKAEGKATVFLAG 423 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 TK A + E LEE D+ D++ G +L+ L G + Sbjct: 424 TKSKAAHVAEILEEQKIYTAL--GDLT--------YDIQKG--QILIASGSLSHGFIYED 471 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + V + D + G R V+ K G KI M A G+ Sbjct: 472 LEFVILSDRELFG--------------KDRKVSTKKKYKGAKIESFMELAEGDYV----- 512 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS--RPIVEPDNVPMDMSPKAL 632 +E HGI G+ + I+ G K G + I + D V + + Sbjct: 513 ---VHENHGI---GIFIGIEKIVTEGVARDNLKINYEGGTLYVNINQMDLVQKYVGSEGA 566 Query: 633 QQKIHELEGLMMQHAQN 649 K++ L + A++ Sbjct: 567 APKLNMLGNPEWKKAKS 583 Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 99/285 (34%), Gaps = 29/285 (10%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 ++ATP L+ S + D V + V + DD + + I + +V Sbjct: 782 LTATPIPRTLQMSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVY 841 Query: 451 VTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + + + L +V H + E I+ E +VLV ++ Sbjct: 842 FLSXRVQNIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIET 901 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD+ + + I+DADK G + L Q GR R+ +A Y + + E Sbjct: 902 GLDIANANTIIIVDADKMGLSQ----LYQLRGRVGRSDK-QAYAY---LLYKRDXILSEV 953 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMS 628 +R K + G G + D+ G G S+ + ++ Sbjct: 954 AEKRLNAIKQFTQLG---AGFKIAMRDLEIRGAG------DLLGASQSG-HMAKIGYELY 1003 Query: 629 PKALQQKI--------HELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 K L++ I E + + F + I+D++ +L Sbjct: 1004 SKMLREAILIEQGGGIEEEKIETTIEIKINAFISSNYIKDEIQKL 1048 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 104/524 (19%), Positives = 197/524 (37%), Gaps = 49/524 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAP 65 L + EAI + G + G + K+ I + +R +++ Sbjct: 4 LTKPLLELKEINEAINHI----NKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITY 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 ++ A ++ +MK + + + P+ D I RL Sbjct: 60 DEIRAGEIQTDMKLYDKKAVI---------------YPAKDIMFFAADVHGNAIISGRLE 104 Query: 126 ATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARN 184 K ++E + ++ S+ A P Y + ++ L+V D + RRL+EL Y + Sbjct: 105 VLKRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKT 164 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Q +G F VRG++ DIFP +++ R+E + +E++ + FD + + + + +Y Sbjct: 165 SQVSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVY 223 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P T + ER + ++++ +E K K E R+ + + + G Sbjct: 224 PATEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSF 283 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GI++Y + + T FDY + + +DE + + R + Sbjct: 284 GIDSYINYF-----FDETETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTK 338 Query: 365 GFRLPSALDNRPLKFEEFEAL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G+ L D + L + T+ +S LE GD+ + Sbjct: 339 GYILSKQADTIWDYKKVLAKLESKSTVLLSL------LETRTGDIKAKQRFDVLS----R 388 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V P + L+ ++ + +V+V + +K AE L E E YL T Sbjct: 389 NVNPYNNSFETLIKDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYL----STD 444 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 ER+ + GE + G LR G + P + I ++D G Sbjct: 445 ERVPV-----SGEVVTIQGN--LRRGFEYPSIKFAIISESDIFG 481 Score = 89.1 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 35/292 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + +SATP L S + D V +D I V D+++ E I + N Sbjct: 779 VLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEHDDEIIREAINREIGRNG 838 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ L E RV + H ++ E I+ + GE DVLV + Sbjct: 839 QVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLVSTTI 898 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + I DADK G + L Q GR R+ + + M K I Sbjct: 899 IETGLDISNVNTIIIDDADKMGLSQ----LYQLRGRVGRSSR-TSFAFLMYKRDRMLKEI 953 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R K + G G + D+ G GKS+ + V Sbjct: 954 AE---KRLAAIKEFTDLG---SGFKIAMKDLEIRGAG------NLLGKSQSG-HMEAVGY 1000 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLEFEEAA-----------QIRDQLHQLR 666 D+ K L +++ L+G + EFE A IR+++ +L Sbjct: 1001 DLYCKMLNEEVKRLKG---EKVAADEFETAVDIEASAYIPADYIRNEVARLE 1049 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 101/525 (19%), Positives = 198/525 (37%), Gaps = 46/525 (8%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + +RL EG+ Q + G G+ +TF +A V L RP +V+ N+ +A ++ + Sbjct: 11 ENSEFKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAED 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ F + +F + D + + ++ R+ K + Sbjct: 70 LEFFLGDKTSRFFYREGFLF---------DLTVRE----GGELKASRIELLKRLSRGEKP 116 Query: 137 VVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V + A+ P + + L VG +++ ++R L+++ Y R DQ G F Sbjct: 117 HTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQ 176 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D++ ++ R E F +E++ L D + + + + IYP V + Sbjct: 177 RGGIVDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVAVAEEDL 234 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +++ ++I ++ + K L++ NK RL ++ E++N LG IE + Sbjct: 235 LLEVKQKISADIEQQVKKLIQQNKREAAGRLKEKGA---EVLNILGKSEVIEKLLPYFWS 291 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 +L DY + L+ +DE QI + + R + G+ LP Sbjct: 292 G------VSLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGGYTLPKQ-AEV 344 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + E+ AL I V + G G P + Sbjct: 345 FYEEEQLMALLRGRIAVITSLLPKTPRFIGDYDPHNF---AGRKPP-----NYLGKEKLF 396 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +I+ A N R+ + + A L L + ++ E+ E+ R Sbjct: 397 FEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFV-------EKFEVEIAPRE- 448 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + +G+ +L G + P+ L+ D + G R +G Sbjct: 449 ---IKIGLGVLNSGFEFPQQKLLVYTDVELAGRAVKARVTKAVLG 490 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 33/280 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 + ++ATP L + + D V T P PV T V + + IR+ Sbjct: 771 VLTLTATPIPRTLHMALMGIRDLSVLNT----PPENRFPVQTYVLEEDPFIIRDAIRREL 826 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V +++ +++ +V H + + ++ + G++DVLV Sbjct: 827 GRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLV 886 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+P V+ + I +AD+ G + L Q GR R+ I Y + Sbjct: 887 STTIIETGIDLPNVNTLIIKNADRFGLAQ----LYQLRGRVGRSNR---IAYAYLMYEK- 938 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 K + E +R K E G GL + D+ G N+ + G Sbjct: 939 DKVLREAAEKRLAAIKEFTEFG---SGLKLAMRDLEIRGAGNLLGPEQHG--------HI 987 Query: 621 DNVPMDMSPKALQQKIHELEGLMM--QHAQNLEFEEAAQI 658 V DM K LQ+ + EL+G + + LE A I Sbjct: 988 AAVGFDMYMKLLQETVAELKGQVTSEEVEPQLELNLTAYI 1027 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 109/650 (16%), Positives = 228/650 (35%), Gaps = 81/650 (12%) Query: 31 GLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFV 90 G + + G++G+ K IA + ++ +V+ N A +L ++ +F ++ + + Sbjct: 23 GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVEDSEIYKY- 81 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD 150 P D E+ ++ + R+ A+ + + + ++ + Sbjct: 82 ------------PMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVPLNGLKKWLT 129 Query: 151 P-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 P D++ L L VG ID L +L + Y R G F +RG ++DI+P Sbjct: 130 PVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIGK- 188 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +R+E FD EV+ + FD + + I I + Y+ + + ++K+ Sbjct: 189 -PVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYED 247 Query: 270 RRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 R + ++ + E +L + FD +++ L E P T Sbjct: 248 TRPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRLVAF--------------MYEQPAT 293 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + DY D ++ VDE + + + L+E G +D L++E FE Sbjct: 294 IMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQNLIESGK---GFIDQSFLQYEGFEN 350 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 L T + +++ +P V+ Q D + SE ++ Sbjct: 351 LLKPFAVTYFTLFTATMPVQLNEIIKFSCKP---------VQQFYGQYDIMRSEFQRFIQ 401 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++V T+ E + L E DT R R ++ Sbjct: 402 NDYTIVVLAETETKKERIQSMLNEMHIPTFI-----DTPSR-------RNEGGSAIITEG 449 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 L EG ++P + LV + + + + ++ A K Y D Sbjct: 450 SLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTLTNA----EKIKSYQDLKVGDYVVH 505 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + R + G++K + + G + + + V ++ Sbjct: 506 VHHGVGRYLG------VETLEVGGVHKDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKS 559 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELFIA 671 ++ K + + + + Q +++ D+L +L RE+ + Sbjct: 560 PKLN-KLGGTEWKKTKAKVQQSVEDMA--------DELIELYKAREMSVG 600 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 102/273 (37%), Gaps = 29/273 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S V D V T + V Q + + E +R + Sbjct: 771 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 830 Query: 449 VLVTTLTKRMA-----EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + K + E L + + V H ++ + E + E+D++V Sbjct: 831 QVFYLYNKVQSIYEKREQLQMLMPDANIGVA--HGQMNERDLEETMLSFINHEYDIIVTT 888 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I DAD+ G + L Q GR R+ I Y + P K Sbjct: 889 TIIETGVDVPNANTLIIEDADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHP-TNK 940 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + ET R + K E G G + D+ G N+ + G D+ Sbjct: 941 VLSETAEDRLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF--------IDS 989 Query: 623 VPMDMSPKALQQKIHELE--GLMMQHAQNLEFE 653 V D+ + L++ ++E Q A +E E Sbjct: 990 VGFDLYSQMLEEAVNEKRGIKAEKQDAPEIEIE 1022 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 100/523 (19%), Positives = 191/523 (36%), Gaps = 50/523 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF + E +R L L DG A +LG K I + A +V+ ++ Sbjct: 7 AFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKR 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A QL E++ F Y P+ D + + + + R+ A +A Sbjct: 66 ARQLAEELEFFTEN---------------VFYYPAKDLLFYQSDIRSNVLTRQRMQAVEA 110 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 111 LRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV---STIPRFTIYP 245 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + + + I P Sbjct: 171 HPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVP 229 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V E + + +E I+ + E+ K E R+ +E + Sbjct: 230 SAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQ 289 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E++ + + + +L DY+P DG++ +D + + +E G Sbjct: 290 VESHLTYFT-----DQTLSLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEEG 344 Query: 366 FRLPSALDNRPLKFEEFEALAPQT-IYVSATPG-NYELEKSGGDVVDQVVRPTGLLDPII 423 + LP + L + + +SA G + LE + I Sbjct: 345 YILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGLEVREHFHI-----------RIR 393 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + LL ++R+ +++ ++ A L + L + V Y V Sbjct: 394 QGSVYNNSYELLLKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFYTEDPEHEV 453 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + E +++V L G ++ + V + + D Sbjct: 454 K-----------EAEIMVTRGSLSAGYELTDAGFVLLTEEDLF 485 Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 97/259 (37%), Gaps = 25/259 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAIN 446 + +SATP L S + D + ++ V D+++ E +R+ A Sbjct: 784 VLSLSATPIPRTLHMSLVGIRDMSILDEAPMERTPIQTFVFEHNDEMIREAVLREMARGG 843 Query: 447 ERVLVTTLTKRMAE---DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V ++A+ L + L E V Y H + I+ D GE D+LV Sbjct: 844 QIYYVFNRVAQIADMTARLQKLLPEAH--VAYAHGRMSQTRLENIMVDFIDGEIDLLVST 901 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+ V+ + I DAD G + L Q GR R+ + K Sbjct: 902 TIIEIGLDISNVNTIIIDDADNMGLSQ----LYQLRGRVGRSNRTAYAFFMY----RRGK 953 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E +R K + G G + D+ G G+S+ ++V Sbjct: 954 LLKEVAEKRLLAIKEFSDLG---SGFKIAMRDLEIRGAG------NVLGESQSG-HMESV 1003 Query: 624 PMDMSPKALQQKIHELEGL 642 D+ K L + + + +G Sbjct: 1004 GYDLYCKMLGEAVRQEKGE 1022 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 107/522 (20%), Positives = 196/522 (37%), Gaps = 71/522 (13%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D TL G+ GS A + + P+ L + ++ F + + Y Sbjct: 11 DKKKAITLSGLRGSSTALLAAQLAK--NSSCCCIVPDDHLIPIVVQNLQLFSEKTILSY- 67 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL 148 PS + S ++ + RL++ ++V S+ A+ Sbjct: 68 -------------PSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114 Query: 149 GDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA-- 205 P L + L + G D+ ++ L L Y + G F VRG +IDI+P Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174 Query: 206 -----ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + + LR++ F + VE L FDP++ + + + P ++ +++ Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSA-KKSL 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +EI L R N +L TQ LE +N +GIE++ PG+ Sbjct: 234 QEIGTALQTRADKYSWNEEL---------TQTMLEKINTGQGIAGIESFLPLFF---PGK 281 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 +LFD+L D +V+ +S + Y+ R + L G P Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQ--RIEQNYLEVQGAGTP----------- 328 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVV-----------RPTGLLDPIIE-VRPV 428 AL P+ I++S +L + +V + GLL I R Sbjct: 329 ---ALPPKEIFLSPEEIKEKLSSFRQVRLSDIVSEQDNATSYNTQSHGLLKQEIARRRAK 385 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L+ IRQ R+++ +++ ++L E LE H + + S + + + Sbjct: 386 EGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK- 444 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R + ++L+ + L EG +PE I +++ G +R Sbjct: 445 ----RAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQMR 482 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 80/208 (38%), Gaps = 22/208 (10%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSEIRQRAAINE 447 ++ATP L+ S + D V + P + RPV T V D ++ E R + Sbjct: 779 LTATPIPRTLQMSLLSIRDLSV----ISSPPEQRRPVKTFVAEDDDLVIKEAISRELRRK 834 Query: 448 RVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + ++A + + + + R+ H +DT E I+ E DVLV Sbjct: 835 GQTFFVHNRVKSIYQIANKIEKLVPDA--RIAVAHGQMDTKELENIMVSFVNKEVDVLVA 892 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ GLD+P + + I AD G + Q GR R+ + + PS+ Sbjct: 893 TTIIESGLDIPSANTMIINRADNLGLA----EMYQLRGRVGRSSTQS---FAYLLVPSLD 945 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLN 590 ++ R + NE G +N Sbjct: 946 SISKDSRERLRALMECNELGGGFKLAMN 973 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 92/542 (16%), Positives = 201/542 (37%), Gaps = 64/542 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + F+P + + +E +DG + G + K + + ++ +V+ + Sbjct: 1 MKAIFEPVYNTAGVEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSD 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + F N + Y P+ D I R+ Sbjct: 60 EGKARDMAEDARFFNGGNVM--------------YYPAKDVIFYNADVQGRQIAGERIRC 105 Query: 127 TKAMLER--------------------RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGM 165 A+++R + +V ++ I + P D + + +++L G Sbjct: 106 IAAIIDRLNKSDIVKSGTEKSTEEASDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGD 165 Query: 166 IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLS 225 I+D + ++L + + R +G F +RG +IDIF + +D+ +R+EL+D+E++ + Sbjct: 166 ILDVEDMAKKLTAMGFERFGMVEAKGQFAIRGGIIDIF-SYTDEAPVRIELWDDEIDSIR 224 Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 FD + + + +T++P T ++ + I Q +E+I+ E + K+ + + +++ Sbjct: 225 AFDADSQRSIENYKSYTVFPATEFLFTEDEIEQGIEKIRHEKDEQMKLFGADKRKRTKEQ 284 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTI 344 + + + L +YS+F+ + +L +Y P D L+VVDE Sbjct: 285 IEAGNHLNRMFDDALRTG----DYSKFIYTFA--DRVSSLAEYFPKGDTLIVVDEPVRLK 338 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + +E G+ LPS F + +T +S + + Sbjct: 339 EHSDMTFYEYSESMKNRLESGYVLPSQT-------HMFMDM--ETAVLSMNGHKQLVLTT 389 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + + + L +IR+ VL+ ++ A + + Sbjct: 390 LEYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRIVD 449 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G Y ++ G V+V L G + P V I + D Sbjct: 450 DLGRLGIESFYTEDSNKSM----------AGGL-VMVTYGSLHRGFEYPLQGFVCIAEND 498 Query: 525 KE 526 Sbjct: 499 IF 500 Score = 83.3 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 31/271 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + +SATP L S + D V +D + V D+++ E I + A N Sbjct: 799 VLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELARNG 858 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V R ++ +++E V Y H + E +I+ D GE DVLV + Sbjct: 859 QVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVSTTI 918 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA--ILYGDKITPSMAK 563 + G+D+ + + I DAD+ G + L Q GR R+ +LY K Sbjct: 919 IETGMDISNCNTMIIEDADRFGLSQ----LYQLRGRVGRSSRTAYAFLLY------RRDK 968 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + E +R + + G G + D+ G N+ G Sbjct: 969 VLTEVAEKRLSVIREFADFG---SGFKIAMKDLEIRGAGNVLGNSQHG--------HMAA 1017 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 V D+ K L Q ++ L+G+ ++ EFE Sbjct: 1018 VGYDLYCKMLNQAVNNLKGIKNEY----EFE 1044 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 245 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 106/531 (19%), Positives = 212/531 (39%), Gaps = 46/531 (8%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 +Q ++L + + G Q + G++GS +T +A ++ Q+P + + + + +L Sbjct: 14 IEQSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELA 72 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ P + V F P + + A+ + + R+ A A+ +R Sbjct: 73 DDLANLLPPDRVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALDALDSQR 119 Query: 135 DVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 VVV SV+ + + P+ + + L + VG +D ++L+ + Y + G F Sbjct: 120 PAVVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDF 179 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +ID++ +D+ +R++LFD EV+ L FD T + V I P T + P Sbjct: 180 AIRGSIIDVYALNTDN-PVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPP 238 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +K++ + K L++ Q++ R L + E + + + + Sbjct: 239 AEFSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLV 297 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 +L DYL ADG L +D+ + G + D+ E V+Y L Sbjct: 298 YPTR-----HSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKY-----HQLV 347 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + P EF L + ++ + +G Q+V T ++ Q+ Sbjct: 348 SVPSLSNEFAKLVKADQHAQLFGALFK-KGAGNLRFSQLVEITSRP-----MQRFFGQMP 401 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L +E+++ + +++ + + L + G V +D V ++ Sbjct: 402 LLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPVIETAADQLQVNTVQ------ 455 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 LV + L G +MP LV I + + ++ R Q + A R Sbjct: 456 ------LVAAS-LNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAER 499 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 20/183 (10%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R+ Y+H + E ++ D G +DVLV +++ G+D+P V+ + + +AD G + Sbjct: 866 RIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADHLGLAQ- 924 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L Q GR R+ + Y + K + E +R + E G G Sbjct: 925 ---LYQIRGRIGRSNR---VAYAYFM-YQPNKVLTELGEKRLAAIRDFTELG---SGFKI 974 Query: 592 KVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + D+ G NI + G D+V D+ L + + +G + Sbjct: 975 AMRDLAIRGAGNILGKQQHGF--------IDSVGYDLYSSMLNEAVARKQGKKRAARADA 1026 Query: 651 EFE 653 E E Sbjct: 1027 EVE 1029 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 108/521 (20%), Positives = 194/521 (37%), Gaps = 49/521 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + I R+ L TL G+ GS + +A ++ +RP +V+AP+ AA++ E Sbjct: 5 DSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTE 64 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ F +D P+ D + S + + RL+ + +++R+ Sbjct: 65 LRFFSG--------RPFDVLS----FPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTA 112 Query: 137 VVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VV + A+ P L L+ G ++ L +L L Y RGTF V Sbjct: 113 AVVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DIFP + +R+E F + VE + FDPL+ + ++ + + P V E Sbjct: 173 RGGIVDIFPPGFEQ-PVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEV 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + A IK + E + + LE + + Y +G+E Sbjct: 232 LKSASHHIKA-------------RCDELEISPVARRELLEQLQQGLYPTGVEWLLPLFHP 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG--FRLPSALD 373 R TLFDY D + VV + + R ++ E G F P+ Sbjct: 279 RL-----ETLFDY-AGDAVRVVLDPEALAEEDERFDRELVTAEDQARERGDLFASPAEF- 331 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L E V+ E + ++ D ++V + ++ Sbjct: 332 --FLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALDIQEN--TDLKVDVSSDSERIL 387 Query: 434 D-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L++ + +RV+V + A+ L E L + + + Sbjct: 388 KPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNISDRPFPAERERD----- 442 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 G+ DV++G L G +PE L+ I + + G + R Sbjct: 443 -DGKVDVVIGD--LSRGFRLPEEKLIVIAEEEIFGRRQKRR 480 Score = 70.2 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 94/257 (36%), Gaps = 27/257 (10%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 ++ATP L S + D + T +D + VA DDL+ E R + Sbjct: 774 LTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIF 833 Query: 452 TTLTKRM-----AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + AE L + E V H +D E +++ GE ++L+ ++ Sbjct: 834 FVHNRVQSIMNWAEHLRRIVPEAKIAVG--HGQMDEGELEKVMLGFMHGETNLLLCTTII 891 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 GLD+P + + I AD G + L Q GR R+ Y + P AI Sbjct: 892 ESGLDIPNANTLIIDRADTFGLAQ----LYQLRGRVGRSKQR---AYAYLLIPGE-GAIS 943 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPM 625 R R K + E G G D+ G +I K G + V Sbjct: 944 SDARERLKIIQELTELG---AGFRLATHDLEIRGAGDILGAKQSGNIAA--------VGF 992 Query: 626 DMSPKALQQKIHELEGL 642 D+ + L++ I L+G Sbjct: 993 DLYTELLEEAIQNLKGE 1009 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 105/530 (19%), Positives = 187/530 (35%), Gaps = 53/530 (10%) Query: 21 IRRLEEGLEDGLAHQTLLGVT-GSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 ++ L L + + T G+ +T +A P + L A + + ++++ Sbjct: 19 VQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQ 78 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-------E 132 + + V F P+SD + S I RL + + Sbjct: 79 WIGTDRVFLF-------------PASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVD 125 Query: 133 RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 V+VA V A+ PD + L GM ++ RL + Y + G Sbjct: 126 VAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPG 185 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 RG +ID+F DD+ LR+E F +E++ L FDPLT + + I I P + Sbjct: 186 EVNRRGGIIDVFSPG-DDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPL 244 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 R + + R + L E + + R +R G ++ Sbjct: 245 WRRDVALERMRAIDTSMLRHEALDEWLQAFDHIRNGER-------------FEGRALFAP 291 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 F R + P TL +LP +V+ E+ + + + R+ ++ G LP+A Sbjct: 292 FF--RDNPQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAG-ELPAA 348 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV------RPTGLLDPIIEV 425 L++ E ALA V+ + + + G P+ + Sbjct: 349 FPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLLSDPAPLPPSFSFGEQNGNPAPLTDT 408 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 R V D + L +R+ +D+ E L RV + ++ Sbjct: 409 RNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRAGE-RVVLITPQAARLQE 467 Query: 486 ---MEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGF 528 + RD G +V+ G+ +L EG MP ++L D + G+ Sbjct: 468 LVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYSDTEIFGW 517 Score = 69.1 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 91/261 (34%), Gaps = 29/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L + + D + T D I V + L+ E R Sbjct: 818 VLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVLPYDERLIREAILRELDRGG 877 Query: 449 VLVTTLTKRM-----AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + A+ L + E V H ++ + ++ D G DVLV Sbjct: 878 QVYFVHNRVQSIYYVADRLRRLVPEARIAVG--HGQLEEHQLERVMLDFFTGRDDVLVCT 935 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMA 562 ++ GLD+P + + I DA G + L Q GR R+ A L+ PS Sbjct: 936 TIIESGLDVPNANTIIIDDATNFGLAQ----LYQLRGRVGRSTQRAYAYLFYKSERPSTP 991 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 +A ER R Q+ G + D+ G N+ + G Sbjct: 992 EA---QERLRAIQEATELGAG-----FRIAMRDLEIRGAGNLLGAEQSG--------HIA 1035 Query: 622 NVPMDMSPKALQQKIHELEGL 642 V D+ + L+Q + L+ Sbjct: 1036 AVGFDLYSRLLEQAVRTLKQR 1056 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 103/649 (15%), Positives = 236/649 (36%), Gaps = 71/649 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 +N F + + + +++ + G+ K ++ DL R + + + Sbjct: 1 MNDVFLYPLQNSKEYKDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSS 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++Y ++ + + Y+ D + + + + E +L Sbjct: 61 DLEAKKVYEDLSFYMEDKV--------------EYLGFQDIYFYHLDAKDRNEEAKKLKV 106 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + +++V S+ A+ + L + H VG +D + +L L Y R Sbjct: 107 LLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVS 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F +RG +ID+F E +R+ELFD+E++ + FD + + + + +F+I P Sbjct: 167 KIEGFGQFSIRGGIIDVFSLEY-TNPIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ P E+ A+ ++K+E + + T +++ ++ Y G Sbjct: 226 SREFIYP-EKTTDALVKLKKET---------------TKNTDEGTFQNIDYISSKTYFEG 269 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENY ++ E ++F YL D ++ +++ + R + +E G Sbjct: 270 AENYIDYIYP----EENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERG 325 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + E L S + + + ++ EV Sbjct: 326 LAIKNQG-KLLYHYTDLEYLVKDK---SVVLNSLLPKSINNFSIKSIINFESR-----EV 376 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD L+ E+ + ++++ T T A L + L + G + D Sbjct: 377 PTFNGKVDLLVEELNRLKYNGYKIILATNTLERANKLGKDLLDKGLETT-ISKD------ 429 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 RD+ + V++ + G + V I D + G + RA++ Sbjct: 430 ----RDIEIKSSQVIIVPAHINSGFQYKSIKFVVITDNEMIGVYK----------RASKT 475 Query: 546 VNGKAILYGDKITPSMAKAIGETER-RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 N K + G KI + ++G+ +Y IT + K + I+ G + Sbjct: 476 SN-KKVKKGKKIESFLDLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGDNL 534 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 K + + + + ++ + +++ + ++L Sbjct: 535 YVPIDQMDKVQKYIGAEVEKVKLNKLGTNEWTKAKAKVKKEIEDMTKDL 583 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 92/502 (18%), Positives = 183/502 (36%), Gaps = 60/502 (11%) Query: 31 GLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFV 90 G + + G++ S K IA Q+ +++ N A ++ ++ ++ + + Sbjct: 23 GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEADILQYVSGEEIYKY- 81 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD 150 P D E+ ++ + + R+ A+ + + ++ + Sbjct: 82 ------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHGEKGLFIVPLNGLKKWLT 129 Query: 151 P-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 P +++ + L VG ID L +L + Y R G F +RG +IDI+P Sbjct: 130 PVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGS- 188 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 +R+ELFD E++ + FD T + + I + Y+ E I ++K Sbjct: 189 -PVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYED 247 Query: 270 RRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 R + ++ + E +L + T FD +++ L + P T Sbjct: 248 TRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAF--------------MYDQPST 293 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 + DY D ++ VDE + + L+E G + ++++ FE Sbjct: 294 IIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISNLIESGN---GFIGQSFMQYDGFET 350 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 L + T + ++ +P V+ Q D + SE ++ Sbjct: 351 LLDERPVAYFTLFTSSMPVELDHIIKFSCKP---------VQQFYGQYDIMRSEFQRFIH 401 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + ++V T+ E + L E V H D + G+ V+ G Sbjct: 402 NDYAIVVLVETETKVERIQSMLNEMHIPV-VTHIDQAST----------SGQAVVVEGS- 449 Query: 505 LLREGLDMPEVSLVAILDADKE 526 L EG ++P + LV I + + Sbjct: 450 -LSEGFELPYMQLVVITERELF 470 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 27/263 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S V D V T + V Q + + E +R + Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDG 829 Query: 449 VLVTTLTKRMA-----EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + K + E L + + V H + + E + E+D+LV Sbjct: 830 QVFYLYNKVQSIYEKREQLQMLMPDANIAVA--HGQMTERDLEETMLSFINHEYDILVTT 887 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I +AD+ G + L Q GR R+ I Y + P+ K Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHPA-NK 939 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + ET R + K E G G + D+ G N+ + G D+ Sbjct: 940 VLNETAEERLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF--------IDS 988 Query: 623 VPMDMSPKALQQKIHELEGLMMQ 645 V D+ + L++ ++E G+ + Sbjct: 989 VGFDLYSQMLEEAVNEKRGIKEE 1011 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 99/537 (18%), Positives = 204/537 (37%), Gaps = 49/537 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I +++ + Q + +TGS K A +I +P +++ ++ LA + +++ + Sbjct: 33 IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P V YF PSS+ + + R+ + + VV Sbjct: 92 LPGEDVLYF-------------PSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVV 138 Query: 141 SVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ + + +L L G D + + ++L+ Y R D +G F +RG + Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI P + + LRVE FD+EV+ + +FD T + T+ I P V E + + Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E++ + + L + + +++ ++ Q E + I Y L Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLE----- 311 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 EP F L D +++DE Q+ + + G S D + + + Sbjct: 312 EPLEPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPED-QFVSY 370 Query: 380 EEFEALAPQTIYVSATPGNYEL-EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 E+F + +V + E+ + + + RP + + L+ E Sbjct: 371 EQFLRYGEKHPFVLISTLPREIPGVAPKRIFNLNARP---------LTGFMGKTGILVDE 421 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I V + + AE + + L + G ++ E+ ++ G Sbjct: 422 IEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALA----------KKHELHEPVQEGG-- 469 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 V V + L +G ++P L+ + +A E + R ++ ++ + A G+ + + D Sbjct: 470 VYVYSSSLDQGFELPLSKLIVLSEA--EIYKRERKAAVKR--KKAPEKTGQRLQFAD 522 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 23/261 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S V D + T D ++ + D + IR+ Sbjct: 798 VLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGG 857 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E + +L + RY H + E + + E DVLV + Sbjct: 858 QVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTI 917 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLDMP V+ + I +AD+ G + L Q GR R+ +A Y K + Sbjct: 918 IETGLDMPNVNTLIIDEADRLGLGQ----LYQLRGRVGRSNR-RAYSYFLY---KPQKVL 969 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G GL + D+ G N+ + G + + Sbjct: 970 TEVAEKRLAAIREFTEFG---SGLKIAMRDLEIRGAGNLIGAQQHGHLAA--------LG 1018 Query: 625 MDMSPKALQQKIHELEGLMMQ 645 ++ + L++ + EL+G ++ Sbjct: 1019 FELYSQMLKEAVQELKGEQVE 1039 >UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 Tax=Rhizobium etli 8C-3 RepID=UPI00019032C1 Length = 411 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 72/349 (20%), Positives = 142/349 (40%), Gaps = 24/349 (6%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G P+ ++ LE+ + Q + G+ GS KT A + ++L PN A QL Sbjct: 8 GKDPQ-VKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLA 66 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 +++ P++ + F P + + A + R++ A+ E++ Sbjct: 67 EDLQHVIPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKK 113 Query: 135 DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 + + V++++ +L+ L+ +G ID + R+L + Y R + + G F Sbjct: 114 AGIYLLPVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEF 173 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +IDI+P + +RVELFD E++ + F+ T + + + P + V Sbjct: 174 SIRGSIIDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGP 232 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 E + +E++++ L R E + + L + YS L Sbjct: 233 EDLEHGIEQMQKMLEKRLAATTEE---ADREFLQDYFGQLTSSWQAGVPTEEAKFYSDLL 289 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + T+ DY P++ LLVVD+ + + R + + Sbjct: 290 Y-----QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKI 333 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 101/527 (19%), Positives = 186/527 (35%), Gaps = 55/527 (10%) Query: 35 QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 Q +LG++GS K + L + +++ P A Q Y E+ E++ E+ V F Sbjct: 27 QLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLF----- 81 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD-L 153 P ++ + V+ + R+ + + +V+ +S I L P L Sbjct: 82 --------PVEESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAAL 133 Query: 154 YLKMMLHLTVGMII-DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 + K + L +G I A + RL EL Y R + G F +RG ++DI+P + L Sbjct: 134 WKKSSIELAMGSEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPL-DQEYPL 192 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ FD EV+ + F+ T + + I I P T +E + +A +I K Sbjct: 193 RLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKIHALYDKDVK 252 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + Q LE I + + E +L DY+ D Sbjct: 253 SSQSPERRDQVSSIQQAIDAQLENGE-------IPSNLPYFLECIYPEKT-SLLDYVSKD 304 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR---LPSALDNRPLKFEEFEALAPQT 389 L++D+ I + + K +E G L D R L E Sbjct: 305 AYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIASGLSLVQDGRKLLKESPLKRTYLA 364 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 I+ L + D + + T +Q+ + E + V Sbjct: 365 IF------QKGLGRLSLDAIHPITTRTMTQ--------FFSQMPMVKVEADRWKKQGATV 410 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +V + A+ + + + + + + G+ ++VG + G Sbjct: 411 IVLVDDAKRAQKVEQTFADFDIKSVISNG------------TVLEGQLQIMVG--KMHNG 456 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 ++PE + + + L Q I A R + + GD Sbjct: 457 FELPEDKFAILTERELFNKLTKRAPRNQKISNAERLKSYTELAVGDY 503 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 104/292 (35%), Gaps = 35/292 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S V D V T + V Q + + I + A Sbjct: 772 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGG 831 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E + L RV +H + I+ GE+DVLV + Sbjct: 832 QVFYLYNRVETIEKKADELRVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTI 891 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + I +AD G + L Q GR R I Y + K + Sbjct: 892 IETGVDIPNVNTLFIENADYMGLSQ----LYQLRGRVGRTNR---IAYAYLM-YQPDKVL 943 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + + E G G + D+ G N+ + G D+V Sbjct: 944 TEVSEKRLQAMRDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF--------IDSVG 992 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLE----------FEEAAQIRDQLHQLR 666 D+ + L + + L+ + + E + A+ I+D+ ++ Sbjct: 993 FDLYSQLLSEAV--LKKQGKEVKSDEETVEIDLQIDAYIPASYIQDERQKIE 1042 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 46/523 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + E ++++E ++D + L G+T K + + + +++A N+ Sbjct: 2 NKLLENINSLEQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++Y + EN F PS D S++ R+ Sbjct: 61 RA-EIYLDSINGIIENKAYLF-------------PSLDINFYNIKSIDNRKLSQRMEVLT 106 Query: 129 AMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +V+ ++ A+ L D + K + + IID + L L Y N Sbjct: 107 KLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +G F RG +ID +P D+ +R+ELFD+EV+ + LFD + + + I I P T Sbjct: 167 ENKGDFAKRGSIIDFWPVSYDN-PVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + ++ I E+ + L ++K + Q+L + + + E + S I+ Sbjct: 226 ELIYSKDDYDKVIKNINREIMS----LDNDSKEINRQKLIDKYKQITAFIEESMFVSNID 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L + + DY+P GL+ D+ I Y +E Sbjct: 282 -----LVNPYRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEV 336 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S R L + +E + I + L+KS +++ IE Sbjct: 337 FKSFEHARILIDDIYEQIDKFRIINLTS----ILKKSKLFNPRKIIEI-----KTIESEN 387 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +VD + + A +++VL+ ++ A L + YL D V ++ Sbjct: 388 FNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLID---------AYLEKDFTQVSKVG 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 I + + + G + ++ + G R Sbjct: 439 IGESFE--KIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSER 479 Score = 72.5 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 25/259 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVV---RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP L+ S + D P + V + I + Sbjct: 775 VLTLSATPIPRTLQMSLSGIRDLSTLDEAPEERMPVNTYVLEYDNGIIK--QAIERELNR 832 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 N +V E L +L E +H I + + + + GE D+L+ Sbjct: 833 NGQVYFVYNRVNDIEKLYNHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLST 892 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+ V+ + I D+D G + L Q GR R + T K Sbjct: 893 TIIETGMDISNVNTIIIYDSDMMGLGQ----LYQLKGRIGRGNRSSYAYF----TYRTGK 944 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E +R K + + G G + D+ G G+S+ + + Sbjct: 945 ILSEISEKRLKSIRDFSDFG---SGYKIAMKDLELRGAG------NLLGESQSG-HVEAI 994 Query: 624 PMDMSPKALQQKIHELEGL 642 D+ K LQ+ + + G Sbjct: 995 GYDLYVKFLQEAVEKASGK 1013 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 109/537 (20%), Positives = 192/537 (35%), Gaps = 41/537 (7%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 P+ + +A + + LG+ S + + IA + + +R +VLAP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ F + + E P+ K S + R+SA M Sbjct: 64 LCADLDFFLQDLKQPESALPGQGWILE--FPAYHILPFKGISYHTETAANRISALSRMAN 121 Query: 133 -RRDVVVVASVSAIYGLGDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQR 190 +VV + A+ P L L + G +D+ A + +L Y +N + Sbjct: 122 SPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEP 181 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F VRG ++D++ LR+E F +EV+ + F P T + + + I P T V Sbjct: 182 GDFCVRGSIVDVYGPPYSQ-PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAV 240 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 ++R+ + ++E+ + + ++++ + TQ+ GIE + Sbjct: 241 VSKDRLQSVIHRVREKAVLADMPVTKIREVVDSLKATQQ-------------FPGIEGFV 287 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET-LVEYGFRLP 369 L G +LFDYLPAD L V + + ET E +P Sbjct: 288 PLLYENGGD----SLFDYLPADTLCTVLDPVAASQEYEKYLEDVEENFETAQAENRLSIP 343 Query: 370 SALDNRPLKFEEFEALA----PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 A+ + P E+F P T A G E E + V T L+ + Sbjct: 344 PAMTHLP--AEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKAS 401 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + + L + + +++ +K AE L L +G + R Sbjct: 402 KERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVGLS----------R 451 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 + V++G L G P SL + + + G R + R Sbjct: 452 NQNWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPKHRRRKIETQRPRT 506 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 52/261 (19%), Positives = 92/261 (35%), Gaps = 29/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT---QVDDLL--SEIRQRA 443 + ++ATP L S + D V T P + RP+ T + D+++ IR Sbjct: 788 VLALTATPIPRTLHMSMVGIRDITVINT----PPEQRRPITTYVSKFDEVIAAEAIRAEL 843 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 A +V + + + L+ R H + +++ E D+LV Sbjct: 844 ARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLV 903 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P + + I AD G + + Q GR R G Y P Sbjct: 904 CTAIIESGLDIPAANTILINRADMFGLAQ----IYQLRGRVGR---GDDQAYAYLFIPDE 956 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +RR + EH G + D+ G A+ + E Sbjct: 957 SVLTRDAQRRLKVLM----EHSDLGAGFAIAMSDLQIRGGGTILGSAQSGQIAAVGYE-- 1010 Query: 622 NVPMDMSPKALQQKIHELEGL 642 M + ++ I +L+G Sbjct: 1011 -----MYLQLMETAIGQLKGE 1026 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 114/531 (21%), Positives = 187/531 (35%), Gaps = 63/531 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F D P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELSFFTGG----------DEQLPVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAM-LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAE 178 RL + RR ++VV + + L L L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP SD + R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGSD-LPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + P + + I ++ E K + ++ Sbjct: 244 EKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKEC-----------------PVFQDIS 286 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV-VDESHVTIPQ-IGGMYRGDRA 356 G+E Y LFDYLP + L+ + + + R + Sbjct: 287 AGISPPGVEYYLPLFFDSC-----SNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYES 341 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 R+ + LP D E + L P Y N LE+ G +P Sbjct: 342 RRVDPL--RPLLPPK-DIYLSIDELYTQLKP---YSRTFISNDILEERAGHYNFASCQPP 395 Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 L +P+A ++ L E + RVL + E L E L R Sbjct: 396 NLPIRAQAEQPLAA-IEAFLME------YHGRVLFCAESAGRRETLLELLGRIRVRPAP- 447 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 E + + + + I L +GL + V I ++ G Sbjct: 448 ---------AESWQAFLSSKESIAITIAPLEQGLQQQQPDTVLIAESQLFG 489 Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 10/186 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 ++ATP L S + D + T + V T + ++ E I + +V Sbjct: 792 LTATPIPRTLNMSMAGIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVY 851 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E + L+E R H + + ++ D F+++V ++ Sbjct: 852 YLHNEVDTIEKVARELQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIET 911 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + I ADK G + L Q GR R+ + Y +TP + Sbjct: 912 GIDIPSANTIIINRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPERRAMTDDA 964 Query: 569 ERRREK 574 +R E Sbjct: 965 VKRLEA 970 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 107/524 (20%), Positives = 182/524 (34%), Gaps = 40/524 (7%) Query: 16 DQPEAIRR---LEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 D P I + + LE G H L G+ GS +A+++A R +VL P++ A + Sbjct: 5 DTPSRISHTATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADE 64 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 E+ F + P+ D S + I RL + Sbjct: 65 FLRELTFFASPSHAPL------------SFPAWDMAPFSATSPHPDISGARLDTLFRLQN 112 Query: 133 RRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 VV V+A + + L+ + +L G ++ +L RL ++ YA RG Sbjct: 113 GLARAVVMPVAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRG 172 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 TF VRG ++DIFP +R+E F + E + FDPLT + + + + P + Sbjct: 173 TFAVRGGILDIFPPNL-SAPVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIIL 231 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + ++A R K ++ ++ +R + LE + Y G+E Sbjct: 232 T--------DGVLADIAPRLKGCCDDLEIPANRR-----REILENLKSAVYFRGVEYLQP 278 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L T+FDY P L ++D I + + + E S Sbjct: 279 LLHPGL-----ETIFDYAPDASLALLD--PQAIQEAITTFGRELEDGEATARQNGLPHSP 331 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L E+ L + + E + + T L + + Sbjct: 332 RQELYLDGEQLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDL--RVTVSKETTQA 389 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L +RQ RVL+ AE L E L + + + E D Sbjct: 390 LTPLSRSLRQWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAETVQGEAQGD 449 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L+ + L G + E LV I + + G R + Sbjct: 450 ASPDGVVTLLQGD-LSRGFRLLEARLVLIAEEELFGKRVRRRGI 492 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 107/300 (35%), Gaps = 28/300 (9%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q + E + E Y +E SRF R P E + + L + +V +H + Sbjct: 692 AQQHFETFHERLKE--YPVRVEALSRF---RTPKEQ-KAILERLKKGEIDIVIGTHRLLQ 745 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + D E F + + + F A+ + ++ATP L S Sbjct: 746 KDVAF--KDLGLLIIDEEQRFGVKDKE-----RLKAFRAVVD-VMTLTATPIPRTLYMSM 797 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK-----RMAE 460 + D + T +D + VA ++L+ E R + + + AE Sbjct: 798 MGIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAE 857 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 + + E V H + E +++ GE ++L+ ++ GLD+P + + + Sbjct: 858 LIAALVPEAKIAVG--HGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIV 915 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 AD+ G + L Q GR R+ Y + P + R + Q +E Sbjct: 916 DHADRFGLSQ----LYQLRGRVGRSSQRG---YAYLLIPGEGSLTSDARERLKILQDISE 968 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 119/650 (18%), Positives = 214/650 (32%), Gaps = 72/650 (11%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + + + L + LE G GV F ++ + L P +V+ + A + + Sbjct: 6 EKKILPVLVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTED 65 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RD 135 + F P +A A PS + + + R+ M E Sbjct: 66 ARFFQPADA----------RAEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLAP 115 Query: 136 VVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 V+V +V A+ P + ++ G +D A+ +L Y R + G F Sbjct: 116 AVLVLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFS 175 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++D+F + R++LF + VE + F P+T + T+ P V ++ Sbjct: 176 IRGGIVDLFSPFHE-APARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKD 234 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 RI + + +K+ A + ++ ++ M + G+E+ + Sbjct: 235 RIGRLIAAVKKRSAELNLPV-------------SVSRDIIDRMEQGTDTEGMESLMPLVY 281 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF-RLPSALD 373 E P TLFDYLP LLV+ + + + R ET E G +P D Sbjct: 282 -----ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEGRWCVPP--D 334 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L ++ + A + +S GD VV G+ D + TQ Sbjct: 335 ALYLDWQAVQKEAFKKPLLSFPVLPVSATPEDGDN-TPVVETAGVTDNSAVTLMLRTQPR 393 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D LLS I + + ++ + + + +L H E + Sbjct: 394 DTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVP----------HESL 443 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + L G L I D + G +R R++ Sbjct: 444 DAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRH---------RSSAGK 494 Query: 547 NGKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G +Y D T + + R + + GI L D + Sbjct: 495 KGARDVYLDLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRD-----GDRL 549 Query: 605 KTKAKGRGKSRPIVEPDNVPM----DMSPKALQQKIHELEGLMMQHAQNL 650 +R V D+ M K + + + A+ L Sbjct: 550 YLSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKEL 599 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 23/258 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAIN 446 + ++ATP L S + D V T + ++ ++ DD + IR+ Sbjct: 782 VLSLTATPIPRTLHMSLSGMRDISVITTP-PEHRKAIKTYISEFDDAIIRTAIRKELERG 840 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++ + ++L++ VR +H +D + E D+LV Sbjct: 841 GQIYFVHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTR 900 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I AD G + + Q GR R+ Y P + A Sbjct: 901 IIESGIDIPSANTIFINRADMFGLAQ----IYQLRGRVGRSDEQ---AYAYLFIPRES-A 952 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +G+ R+R K EH G + D+ G A G S+ V Sbjct: 953 LGKDARKR---LKVLMEHSDLGSGFQIAMNDLKIRGGGAA------LGVSQSG-HITAVG 1002 Query: 625 MDMSPKALQQKIHELEGL 642 DM + ++Q + EL+G Sbjct: 1003 YDMFLQLMEQAVAELKGE 1020 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 118/568 (20%), Positives = 199/568 (35%), Gaps = 73/568 (12%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A + + Sbjct: 10 GPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETF 69 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F V + P D ++ +E +R+ +L Sbjct: 70 QDLSLFLGSGKVLLY-------------PPWDIQTTDMFALQRDVELVRMEVLARLLTDE 116 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHL-TVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+VAS+ A+ P L L + G + + ++ +L Y R +G F Sbjct: 117 PAVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEF 176 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 177 SLRGHVLDIFPP-LEDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSE 235 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-------LEMMNELGYCSGI 306 ER +A++ I+ AA ++L E T F+ E + S Sbjct: 236 ERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPT 295 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG--------DRARK 358 EN + T FDYLP + +V+D++ + +R K Sbjct: 296 EN-----ATATQAVRLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGK 350 Query: 359 ETLV-EYGFRLPSAL--DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVR 414 L E + A D R + E LA + A+ + + S + + + Sbjct: 351 FYLEREASYVTKDAFIKDLRRFQRMILEGLALGRLTEYASGNGEKTQASQYESLPLPLAT 410 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR 474 L D T + L+ IR+ V K + + L + VR Sbjct: 411 DPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPVR 470 Query: 475 ----------YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +LHS + LR G L P++ L AI + + Sbjct: 471 TPEGSLISEAFLHSGPGVLS-------LREGR---------LSRSFLFPDLKLAAISEEE 514 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAIL 552 G + GR R+ L Sbjct: 515 LFGK--------KITGRRIRSAREGYFL 534 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 96/258 (37%), Gaps = 23/258 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S + D + T D I+ + + + IR+ A N Sbjct: 814 VLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLEFNEETIREAIRRELARNG 873 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V R + +E+ +H + E +++ E +VLV + Sbjct: 874 QVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMKPREIEDVMGRFLRKECNVLVCTTI 933 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + + AD+ G + L Q GR R+ Y + P Sbjct: 934 IGSGLDIPTANTILVNRADRFGLAQ----LYQIRGRVGRSSEE---AYAYLLVPKGVLLS 986 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDI-LALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++R + ++E G D+ + G N+ T G + V Sbjct: 987 RDAQKRLQVIMDFSEP----GSGFRIASSDMEIRGGGNLLGTSQSGHVSA--------VG 1034 Query: 625 MDMSPKALQQKIHELEGL 642 ++ + ++Q I E++G Sbjct: 1035 YELYTELMEQTIREIKGE 1052 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 85/481 (17%), Positives = 200/481 (41%), Gaps = 49/481 (10%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D L GV+ + K + + +RP + + + A + Y + + E + Y+ Sbjct: 20 DKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILYY 79 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG 149 P+ E S + + R++ K + ++V S++A G Sbjct: 80 -------------PAKPITHEFIDSHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEKG 126 Query: 150 DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDD 209 ++ I+D + L + YAR + +G + V+G ++D+F D+ Sbjct: 127 L-FWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIMG-DE 184 Query: 210 IALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAA 269 + +R+E FD+E++ + FD TG+ + I +FT+ P + + I + ++++ +L Sbjct: 185 VPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLEK 244 Query: 270 RRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL 329 E++ + + + E + + + Y + + +L D L Sbjct: 245 AI-------TQNEDEEIDKNYRELYEKIAD--DTNDTTKYIFY-----ASKQTKSLID-L 289 Query: 330 PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 D L++ D+ + ++ ++ + L E+G L ++N KF E A + Sbjct: 290 YKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNHF-KFAE----AEER 344 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + ++L + ++ + + D I V+ + +D++++ +++ + +V Sbjct: 345 FINLDSLIYFDLSMASNNLFCKDIVEVKSSDNINYVKNINYLIDNIVTYLKE----DYKV 400 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++T ++ ++L+E+L + Y H TV+ + L + ++ G+N+L E Sbjct: 401 IITYKNEKEKKNLSEFLSN--YNIDYTH----TVKEGHV----ALVKSNIRNGVNILSEK 450 Query: 510 L 510 L Sbjct: 451 L 451 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 99/273 (36%), Gaps = 21/273 (7%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL--SEIR 440 E + T+ + P + G + + +P + E + DD + I Sbjct: 754 ENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKERE---ETETYVIEYDDYIIKDAIN 810 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +V + + AE L + G +V + + + E + + EFD Sbjct: 811 RELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEFD 870 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ GL++ + + I + + G + L Q GR R+ N A Y +T Sbjct: 871 VLVCTAIVENGLNILNANTMIIKEGNNLGLSQ----LYQLRGRVGRS-NKNAYCY---VT 922 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 KA+ E +R K + G G + D+ G + + Sbjct: 923 YEKDKALNEVAMKRLKAINEFTKFG---SGFQIAIRDLQIRGSGNLLGANQSGHFTNVGY 979 Query: 619 EPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 E + M +AL++ E + ++ N++ Sbjct: 980 E---LYTKMLQEALKESKGEAQKEPVETTINIK 1009 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 90/470 (19%), Positives = 183/470 (38%), Gaps = 54/470 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A ++L +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L ++ + E + + +P ++++S +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEEP--------GFLPDPSLLPYQRAVSDRNSS----LEKMRLAGIL 114 Query: 129 A--MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + ++V +V A+ P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 115 GGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQES 174 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI P Sbjct: 175 IVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTISP 233 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + ++++ R +LL +N E R D+ +NE Sbjct: 234 AS-------ELFHLGQLTRKDINNRLDILLTDNLNPEFSR---TLSADINHLNEGLKPEY 283 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 E ++ ++ DYLP+D L+V+DE + + + + +G Sbjct: 284 PEFFAPLF-------NTSSILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLSHG 336 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LPS + E A+ + S G + + D + Sbjct: 337 -ELPSVYPRPYFNWAEISAMLKTK--------KRLIMASFGRESESLKLDFASPDNYV-- 385 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 ++ L ++ + RV++ + A L E L+E Sbjct: 386 ----GRLSGLYEKLPELKGHTGRVVIVS---HQAARLAELLKERSILAVV 428 Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 14/191 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR--PTGLLDPIIEVRPVATQVDDLLSE-IRQRAAI 445 + +SATP L S V D V P G PI V + L+ E I + Sbjct: 764 VLTLSATPIPRTLHMSMVGVRDMSVIETPPGERLPIKTVVAAFD--ERLIREAILREMER 821 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGI 503 N +V + L E +++ R H + + ++ D E DVLV Sbjct: 822 NGQVFFVSNRVMGINLLAERIQKLVPEARIGIGHGQMAEDKLAAVMADFVRYELDVLVCT 881 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I AD+ G + L Q GR R+ + Y + Sbjct: 882 TIIESGVDVPNANTLIINRADRFGLTQ----LYQLRGRVGRSSQ---LAYAYFLYDKEKH 934 Query: 564 AIGETERRREK 574 G+ E+R + Sbjct: 935 LSGDAEKRLKT 945 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 91/505 (18%), Positives = 178/505 (35%), Gaps = 50/505 (9%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + L LE G + G++GS KT ++ ++ +++ N+ A +L ++ Sbjct: 11 PELSALWPKLETG--RHLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLS 68 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + V F P D + A + R++A + + ++ Sbjct: 69 SLLGDALVYDF-------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGII 115 Query: 139 VASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V S++ L P + L + + +D + + ++L + Y R+ G F +RG Sbjct: 116 VTSLAGYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRG 175 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P DD +R+ELFD E++ + FD T + + + + I P T + + + Sbjct: 176 GIIDIYPLNQDD-PIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLT 234 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A I ++ A + + + T L +L EN + L Sbjct: 235 DAGARIGKQATAYKAKVKDAAAK------QAITDGLLTTSQQLQALERPENLA--LYAPE 286 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + DYL D L+ D+ + + + L E G LP N + Sbjct: 287 LYPEHHRITDYLAGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEGRLLPK-TPNPTI 345 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + P+ G +L V P V+ +Q+ L + Sbjct: 346 QALNQRDRHPRLYLSLFQKGMGQLRLDSLTNV-----------PSRNVQQFFSQMPLLKT 394 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E + + V+ K + L+ L + L G+ Sbjct: 395 ETDRWVKQKQTVVFLVSDKNRLDKLSATLHDFEISNVVTEP-----------NQLLSGKV 443 Query: 498 DVLVGINLLREGLDMPEVSLVAILD 522 + L+ G ++P++ LV + + Sbjct: 444 Q--LTDGSLKNGFELPDLKLVVVTE 466 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 23/258 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S V D V T + V Q ++ E I + Sbjct: 769 VLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGG 828 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E LEE Y H + + +I D G +DVLV + Sbjct: 829 QVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTI 888 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+DMP + + I +AD G + L Q GR R+ + Y + M K + Sbjct: 889 IETGVDMPNANTLIIENADHYGLSQ----LYQLRGRIGRSSR---VAYAYFMYQPM-KVL 940 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + K E G G + D+ G N+ + G D+V Sbjct: 941 NEVAEKRLQAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF--------IDSVG 989 Query: 625 MDMSPKALQQKIHELEGL 642 D+ + LQ+ +++ GL Sbjct: 990 YDLYTQMLQEAVNKRRGL 1007 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 97/505 (19%), Positives = 185/505 (36%), Gaps = 59/505 (11%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-IADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + L D + G++ K +A++ L P +V+ ++ AA+L ++ Sbjct: 16 KSVAHILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTM 75 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 + A F P+SD + + ++ E R+ A L + ++++ Sbjct: 76 CGDTAAYQF-------------PASDLTLADTEAQSQEYEYKRIETLSAALSGKARLIIS 122 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 S A L P D+ K + L G I + L Y R D +G F RG + Sbjct: 123 SSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSL 182 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 DI+P SD +R+EL+ +E++ ++ FD T + + T+ +I P + + Sbjct: 183 ADIYPVSSD-YPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPCGETIFEEGVLSGT 241 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 ++ + E+ +K E K R + D+ + + + Y Sbjct: 242 LQTLLEKTEKNKKKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPL-----CY 287 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + P ++FDY L+V ES G + L E G L LD + Sbjct: 288 KEPGSIFDYA---STLIVSESFTAAEAAKGAISAHLEDLKLLTEDG-VLCKGLDRYLMSK 343 Query: 380 EEFEALAPQTI--YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 E++ + Y+ ++ S VD I++ + + L Sbjct: 344 AEYQDTVKNKVRLYMDTFIRGGGIDLSDILKVD-----------SIQLSAWSGEYKMLFE 392 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ + ++ T + A+ L E L + G + Y + + LG Sbjct: 393 ELDNYSRNGYSCVIFGGTDKAAKILAEDLHDKGYKADYAKNP----------KKFYLGRI 442 Query: 498 DVLVGINLLREGLDMPEVSLVAILD 522 V+ G +L G + PE + + Sbjct: 443 TVVEG--ILSAGFEYPEEKIAVLTR 465 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 35/264 (13%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 + +SATP L + + D V T P + P+ T V + + I + Sbjct: 767 VLTLSATPIPRTLNMAMSGIRDMSVIET----PPGDRHPITTYVVEHDRGVIAQAINKEL 822 Query: 444 AINERVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 N +V + A D+ + E + H + E + + R L GE D Sbjct: 823 RRNGQV-YYVHNRIESIYSCAADIHSMVPEANIGIA--HGRMSEEELLNVWRRLIEGEID 879 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV L+ G+D+P + + I +AD G + L Q GR R +A Y T Sbjct: 880 VLVCTTLIETGVDVPNCNTLIIENADCMGLAQ----LHQLRGRVGRTNR-RAYAYF---T 931 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 K + E +R + G G + D+ G G+S+ Sbjct: 932 FRRGKVLSEIATKRLDAIREFTRFG---SGFRIAMKDLEIRGAGSV------LGQSQSG- 981 Query: 619 EPDNVPMDMSPKALQQKIHELEGL 642 +V DM K L + I E +G Sbjct: 982 HLASVGYDMYIKLLNEAILEQQGK 1005 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 94/529 (17%), Positives = 190/529 (35%), Gaps = 49/529 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + + L G Q + G+ GS +T IA+++ + QR + + A+Q Sbjct: 9 QTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHASQ---- 63 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + ++ P + + A+ + R+ A +A+ R V Sbjct: 64 ---------LVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRALQSDRPV 114 Query: 137 VVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVV S+S + L P + ++VG D A+ ++L + YA G F V Sbjct: 115 VVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAV 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG +IDI+P +D +R++ FD EV+ L FDP T + + + P T ++ + Sbjct: 175 RGSIIDIYPLAAD-YPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDFILTADE 233 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ L A+ L + LT + Q ++ + + + ++ +L Sbjct: 234 RATGATALRTTLQAQAADLAAEDAT----TLTNQVQPLIDGLQKGSVDPQLLEFADYLFP 289 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + DYLP DG+++ + + + + + Sbjct: 290 EHHQ-----VLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFTQQTFGG 344 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 L+ Q + G L + ++ Q+ + Sbjct: 345 ELRPIVRADKHAQIMLALFQKGMGSLRFQAMTNMTT-----------RAMQQFFGQLPVM 393 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 +EI + + V++ + + + L++ + S +++ + Sbjct: 394 KTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLTKSANLQPALTQLVPE---- 449 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 L+ G ++PE SLV I +A+ + +R QT+ A R Sbjct: 450 ---------RLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAER 489 Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 59/289 (20%), Positives = 109/289 (37%), Gaps = 32/289 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S V D V T + I+ + + IR+ Sbjct: 770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGG 829 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE-----RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + V L R +D+ + + + RV Y+H + + ++ D G++DVLV Sbjct: 830 Q--VFYLHNR-VDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVT 886 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + + +AD+ G + L Q GR R+ + Y T Sbjct: 887 TTIIETGIDIPNANTLFVENADRMGLSQ----LYQLRGRIGRSNR---VAYA-YFTYQPN 938 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 K + E +R + K E G G + D+ G N+ + G + Sbjct: 939 KVLTEVSEKRLEAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGF--------IN 987 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRE 667 +V D+ + L + + G Q + E EA D + ++ Sbjct: 988 SVGYDLYTQMLSDAVAKKRGQKTQPKTDTTIELGVEAYLPSDYIEDEQQ 1036 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 90/531 (16%), Positives = 205/531 (38%), Gaps = 62/531 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 DQ +++ ++G L G++G+ K+ +AN ++ +++ ++ A +LY Sbjct: 7 FDQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELY 65 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 E+ E V F S D + A ++ RL A +L+ R Sbjct: 66 DELSTLLGEEKVFQFF-------------SDDNIYAEFALASKDRIAYRLEALNFLLDER 112 Query: 135 --DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 +VV ++ L P+ +L+ L LT G D ++ L++ Y + + G Sbjct: 113 ATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGE 172 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F +RG+++DI+P ++++ +R+E F +EV+ + FD + + ++++ R IYP + ++ Sbjct: 173 FSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILT 231 Query: 253 RERIVQAMEEIKE-------ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + + E + + N + + + + Y Sbjct: 232 DNEFDKGAKSLTEMTNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQNHYYHKD 291 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG--DRARKETLVE 363 + ++ + + +L +Y P + + +D+ + D E +E Sbjct: 292 LRKFAEYFYDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKAME 346 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GF + L + + P T + + G L Q Sbjct: 347 RGFEGQTYLLD---TMAKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQH----------- 392 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ Q++ +E+ + V++ + E L + L E ++ V Sbjct: 393 SMQQFFGQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLSLQ-------EV 441 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 +R I ++G+ + L+ + L G + + LV + + + G +R +++ Sbjct: 442 DRESI----QVGKVN-LIDLQ-LSNGFNFLDEKLVVMTEQEIFGKMRKKKA 486 Score = 66.4 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 109/294 (37%), Gaps = 39/294 (13%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 + ++ATP L S + D V T P PV T V + + I + Sbjct: 777 VLTLTATPIPRTLHMSMLGIRDLSVIET----PPTNRYPVQTYVMETNYGVVRDAILREI 832 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V E LEE R +H + V+ + G++DVLV Sbjct: 833 SRGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLV 892 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+P + + I +AD G + L Q GR R+ + Y + Sbjct: 893 ATTIIETGVDIPNSNTLFIENADMMGLSQ----LYQLRGRVGRSNR---VAYAYFM-YRP 944 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 K + E +R + K E G G + D+ G N+ ++ G Sbjct: 945 EKILSEVSEKRLEAIKGFTELG---SGFKIAMRDLSIRGAGNLLGSEQSGF--------I 993 Query: 621 DNVPMDMSPKALQQKIH-ELEGLMMQHAQNLE-------FEEAAQIRDQLHQLR 666 D+V D+ + L++ IH +L + N+E F A I D+ ++ Sbjct: 994 DSVGFDLYSQLLEEAIHTKLGTSKQKRTSNVEISLELDAFIPAYYISDERQKIE 1047 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 218 bits (555), Expect = 5e-55, Method: Composition-based stats. Identities = 83/515 (16%), Positives = 180/515 (34%), Gaps = 48/515 (9%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L + + GV + ++ +P +V+ + A L Sbjct: 9 EDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRARNLTE 68 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + EN E+F PS + S++++ E R++ +L Sbjct: 69 YLNDI-EENICEFF-------------PSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEK 114 Query: 136 VVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V + A+ + K + +I+ + +L L+Y R D +G F Sbjct: 115 FIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIESKGQFA 174 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++DIFP S +R+ELFD+E++ + F+ T + + I + + Sbjct: 175 IRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDS 233 Query: 255 RIVQAMEEIKEELAARRK--VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + I++ L R + EN + + + +E + S +E Sbjct: 234 KKESIINSIQKNLDKRVDHPIFGENVD-----NVKDKFEKLMEYIR-----SDLEYEIDL 283 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 +S + T+FDY D ++++++ + LVE G L S Sbjct: 284 VSCFLTKKDYDTVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVL-SKH 342 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 + + + V+ T + + Q+ +E + Sbjct: 343 EQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLK--------TLEAPNFNKNI 394 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D L+ I+ + + +V L + L + I T+E + ++ Sbjct: 395 DSLVENIKSNSLRGFKQIVFAANVERKNMLKDLF---------LTNGIPTLEAEDYNANI 445 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + VL+ L G ++ + + I + G Sbjct: 446 KS--SQVLITQKNLPNGFEIKDPKYLIITYKEIFG 478 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 21/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L+ + D + D I + I + Sbjct: 777 VLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGG 836 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 ++ + + L+E + H ++ E ++ D + G +D+L+ + Sbjct: 837 QIYFVYNRIEDIDQMEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTI 896 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + I +ADK G + L Q GR R+ + Y T K++ Sbjct: 897 IETGLDIQNVNTMIIYNADKMGLSQ----LYQLKGRIGRSDR-TSFAYF---TYEGQKSL 948 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R K E G G + D+ G G+S+ + Sbjct: 949 TEISEKRLMAIKDFTEFG---SGFKIAMRDLELRGAG------NLLGESQHG-HIAKIGY 998 Query: 626 DMSPKALQQKIHELEGL 642 D+ K L+Q + E +G Sbjct: 999 DLYVKLLEQAVREAKGE 1015 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 87/524 (16%), Positives = 188/524 (35%), Gaps = 51/524 (9%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + I++++ GL+D + + +T K + L + + N + + ++ Sbjct: 12 DQIKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPKRSEKFLQDIN 70 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + + P DT S+++ RL ++ + + Sbjct: 71 QISAKAK---------------LYPDLDTNFYNIKSIDDKKINQRLECLISLSKGEKFIT 115 Query: 139 VASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V + +AI L D + K + + IID + L+ L Y D +RG F RG Sbjct: 116 VTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFVEERGDFAKRG 175 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P +D +R+ELFD+EV+ + +FD T + + I I P + + Sbjct: 176 SIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPANELLYDSDDYK 234 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + ++ I ++ + ++Q+L + + + +++ Y + + L Sbjct: 235 KVIKAISNDID------KKEVTNTKDQKLVDKYKQIISFLDQKMYVANKD-----LINAY 283 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 E + DYLPA + + D+ + +E G + N L Sbjct: 284 RTENYSSFIDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENGEVF-GSFANYLL 342 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLL 436 E + ++ T ++ P ++D IE +++ + Sbjct: 343 DSSEIYKNISEKSIINFTSILKR---------TKLFSPRKIIDLKTIEAENFNKDIENFI 393 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 A +++V V +K E+L + +H + E D + Sbjct: 394 RTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF---------EENSTDF--DK 442 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +++ EG + +V L + G S+++ + + Sbjct: 443 TPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKKNNRKKVS 486 Score = 75.2 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 97/261 (37%), Gaps = 29/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 + +SATP L+ S + D L DP E PV T V + + I + Sbjct: 770 VLTLSATPIPRTLQMSLSGIRDLST----LDDPPEERLPVNTYVLEFDSGIIRDAILKEI 825 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 N +V E L +++ +H + + I+ D G+ D+L+ Sbjct: 826 NRNGQVYFVYNRVNDIEKLFLKIKDLVPEASIEIVHGQMSPRQIENIMMDFIDGKIDILL 885 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+ V+ + I D+D G + L Q GR R + Y + + Sbjct: 886 ATTIIETGMDIKNVNTIVIYDSDLMGLSQ----LYQLKGRIGRGYR-SSYAYFTYRSGKI 940 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 IGE +R K + + G G + D+ G G+S+ + Sbjct: 941 LTEIGE---KRLKSIRDFSDFG---SGYKIAMKDLELRGAG------NLLGESQSG-HVE 987 Query: 622 NVPMDMSPKALQQKIHELEGL 642 V D+ K LQ+ + + G Sbjct: 988 AVGYDLYVKFLQEAVEKASGK 1008 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 84/484 (17%), Positives = 175/484 (36%), Gaps = 55/484 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 +++ N+ A +L + PE V+YF T + A+ Sbjct: 45 KQNNVLIIIEENENKAQRLVDNLAPILPEEKVQYFA-------------VDSTLATQRAT 91 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAIL 173 + R+ A +L +VV + + Y L D Y++ + VG D + + Sbjct: 92 ASPDELAQRIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELN 151 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 + L Y + + G F VRG+++DI+P +R+E F +EV+ + FD T + Sbjct: 152 KWLVASGYRKEALVAKPGEFAVRGDILDIYPL-DQVSPIRIEFFGDEVDTIKSFDVNTQK 210 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + P + + + +A IK+E+ E Q Sbjct: 211 SILEKEEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNF 257 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE+++EL + +NY+ + P +L YLP +GL+V ++ + Sbjct: 258 LEVLDELAQGNLPDNYAFLVDYLLP--KSCSLLSYLPENGLVVFNDWQAIKKADSEITDQ 315 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + ++ G L S L +Y+S +K G + + Sbjct: 316 NADFISDEIKAGLMLNSQKLRMNLT-TVLRQSKHHRLYLSL------FQKGMGQLRFDSL 368 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 +P +Q+ + SE+ + V++ +R ++ + L + + Sbjct: 369 FNWPNREPE----QFFSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNL 424 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG-FLRSE 532 + +L + + VG +G +P++ LV + + + + + Sbjct: 425 PIVTK-----------ENLVEHKLQITVG--QFSQGFSLPQIQLVYLTERELFNTQVHKK 471 Query: 533 RSLI 536 R ++ Sbjct: 472 RKIL 475 >UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Streptococcus suis 98HAH33 RepID=A4VYI1_STRS2 Length = 320 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 135/329 (41%), Gaps = 33/329 (10%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 + I + + GL Q LLG++G+ K+ +A L M++ + A +L ++ Sbjct: 10 NKQINQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKLVADL 68 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDV 136 V F + D+ I + ++ Q R+ + + + Sbjct: 69 TAIIGSENVYNFFTD-------------DSPIAEFVFASKERTQSRIDSLNFLTDSTSSG 115 Query: 137 VVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 ++VAS V+ L P+ Y + L VG I+ +++ L + Y + + +G F Sbjct: 116 ILVASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQGEFSQ 175 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG+++DIF +S+ R+E F +E++ + +FD + + + + +I P + + E Sbjct: 176 RGDILDIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIILSSED 234 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +A + I+ + + L E L E +T++ + + C Sbjct: 235 YSRASQYIQTAIE--QSTLEEQQSYLREVLADMQTEYRHPDLRKFLSC------------ 280 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTI 344 E TL DYLP L +D+ ++ Sbjct: 281 --IYEQSWTLLDYLPKSSPLFLDDFIKSL 307 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 95/505 (18%), Positives = 192/505 (38%), Gaps = 65/505 (12%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I +A + +P +++ N+ A + + ++ ++ +E FV Sbjct: 24 KNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELFVLD 83 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGDP 151 + + A + R+ +L R VV+A+ + Y L P Sbjct: 84 GN-------------LATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAP 130 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 L+ K H VG I + + L + Y R + + G F +RG+++D++P + + Sbjct: 131 ALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRES-P 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 LR+E F +E++ + FD + + + +P T+ + +V E + +A E+ +L Sbjct: 190 LRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKEA 249 Query: 272 KVLLE-NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 LE + L +L L+ + + +L DYLP Sbjct: 250 AASLEIAQEALANGQLPDDCNRYLDYLLSKSF---------------------SLLDYLP 288 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 A GLL+ ++ + + M + + + + S R +A + Sbjct: 289 AKGLLLFNDWQLIAESVKNMGAINDDYLASQI-ASKMMTSRQKLRLDFDAVLKADCHHRL 347 Query: 391 YVS-ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 YVS L D E + +Q++ L +E+ A + V Sbjct: 348 YVSLMAHSMGRLRFGQHLAWDS-----------REPQQFFSQMELLKTELDSYAKKGQTV 396 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 ++ ++R AE+ ++ + +D L+ G +++G G Sbjct: 397 VLQVSSRRQAEEFNRSCHDYDIYLPLAEADG-----------LKEGRAQLVIG--GYASG 443 Query: 510 LDMPEVSLVAILDADKEGFLRSERS 534 +P+ LV + + KE F +++RS Sbjct: 444 FVLPDSDLVYLTE--KELFNQNKRS 466 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 27/260 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S + D V T + V Q+ + E QR Sbjct: 759 VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQRGG 818 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + L + L E R+ Y H + + +I+ EFD+LV Sbjct: 819 QVFYLHNRVGDIEETVARLEQLLPEA--RIAYAHGQMSENQLEDILSRFLDREFDILVTT 876 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+DMP V+ + I DAD G + L Q GR R+ + Y + K Sbjct: 877 TIIETGIDMPNVNTMIIEDADHYGLSQ----LYQLRGRIGRSAR---LAYAYFL-YQPNK 928 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + E +R + E G G + D+ G N+ + G D+ Sbjct: 929 VLTEVGEKRLDAIRDFTELG---AGFKIAMRDLSIRGAGNMLGAQQHGF--------IDS 977 Query: 623 VPMDMSPKALQQKIHELEGL 642 V D+ + L I E +G Sbjct: 978 VGYDLYSQMLADAIKERQGK 997 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 81/452 (17%), Positives = 165/452 (36%), Gaps = 40/452 (8%) Query: 26 EGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENA 85 ++ G Q L+ + G ++ ++A +I + ++++ + A L E+ + Sbjct: 10 PSVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHD 69 Query: 86 VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAI 145 V P +T S ++ + RL + V+ ++ + Sbjct: 70 VNL-----------CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTL 118 Query: 146 YGLGDPDLYLKM-MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFP 204 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 119 MVRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFP 178 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 LR+ELFD+E+E + FD T + + + P + T I + + Sbjct: 179 TGCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYR 237 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 K E + + Q +L +GIENY + + Sbjct: 238 RRFEVISK---------EAESVYQLVSRNL-------MPAGIENYLPLF-----FDDTAS 276 Query: 325 LFDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 LFDYLP + L+ D + ++ R+ + + F F Sbjct: 277 LFDYLPENTQLITLGDIDKACANHLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAF 336 Query: 383 EALAPQTIYVSATPGNYELEKSGG--DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + ++ TPG+ +L + G DV + + P+ ++ ++ L ++ Sbjct: 337 KPYKRSQFFIH-TPGDAQLGEDGTKKDVAKKDSALQANVAPLPDINANH-KLKQPLESLQ 394 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 A + +L + ++ E L L + G + Sbjct: 395 AFAQDGKPLLFSAESEGRREALLALLSKIGIK 426 Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 72/195 (36%), Gaps = 11/195 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVL 450 ++ATP L + + D + T + ++ + + + +V Sbjct: 783 LTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGGQVY 842 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER--MEIIRDLRLGEFDVLVGINLLRE 508 E + L + R + ER +++ D F+VLV ++ Sbjct: 843 YLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIET 902 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + I ADK G + L Q GR R+ + Y ITP + K I Sbjct: 903 GIDVPSANTIVIDRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYMITPPI-KLISTD 954 Query: 569 ERRREKQQKYNEEHG 583 R+R + EE G Sbjct: 955 ARKRLEAIDALEELG 969 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 85/444 (19%), Positives = 187/444 (42%), Gaps = 44/444 (9%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 E + + G + + I N + +V++ +K A +L+ + +F E Sbjct: 15 EKKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGET---- 70 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 Y PE + +++ S + + Q + + ++ +++ + AIY Sbjct: 71 ------YIYPEIDI------LKRHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIYRT 118 Query: 149 G-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 +P + + +I + R+L + Y R + G F RG ++DIF S Sbjct: 119 VKNPSDFKNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLS 178 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + +R++ FD+E++ + +FD +T + + I IYP + + E +E + +L Sbjct: 179 EK-PIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKL 237 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 ++ EN Q ++ + +E+ G S +E++S + E ++ D Sbjct: 238 DDKKIQKDEN-----YQEISTYLKEKVEIYRATGDFSDLESFSNLIY-----ENTYSIAD 287 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 YL D ++ D H + +I G+ R + + +DN + FE+ + L Sbjct: 288 YLNDDTIVFYDNYHKILEKIEGL-REYFLTSLQEMNRSYIYQDVIDN--IAFEKIQNLDI 344 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + Y+S N D+++ LD II++ +++ + L EIR++ N Sbjct: 345 RKYYLSTLKLN-----------DKIIEKNYNLD-IIDLAYYSSE-EYLAKEIREKITDNY 391 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE 471 +V+++ T++ + + + L ++ Sbjct: 392 KVIISLNTQKQKDYVEKVLFDNYF 415 Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 97/285 (34%), Gaps = 18/285 (6%) Query: 389 TIYVSATPGNYELEKSGGDVVD-QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S + D V+ I+ A + + Sbjct: 757 VLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEVNRGG 816 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ L+ + Y H + E I+ D+ ++D+L+ + Sbjct: 817 QVFYVYNRVETIDEKYLELKRLLPDINIAYAHGRMSQRELENIMTDVIDRKYDMLISTTI 876 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+ V+ + + DAD+ G + L Q GR R+ +A Y M + Sbjct: 877 IETGIDISNVNTLIVEDADRFGLSQ----LYQLRGRVGRSSR-EAYAYL------MYEPF 925 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIV---EPD 621 EK+ + G + D+ G ++ + G S + Sbjct: 926 KSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSVGYTLYSQML 985 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + L+ + + + + +N+ E A I+ + ++ Sbjct: 986 EQEIQAKKGILEPLLEQDRTQDVSYYENIIKEAAPSIKKDIFEVE 1030 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 96/565 (16%), Positives = 211/565 (37%), Gaps = 59/565 (10%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTMVLAPNKTLAAQL 73 I ++ D + Q + GV + K A V L+ + ++L + A QL Sbjct: 13 PLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQL 72 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 +++ + V + S ++ + A + + R+ A +A+L + Sbjct: 73 TSDLEALLEDENVF-------------EMQSEESLATETAVASRDADLSRVLALRALLSK 119 Query: 134 RDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +VV +S + DP+ + + +L + Q + ++L E+ Y + G Sbjct: 120 ENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGE 179 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + ++ P + ++ P Sbjct: 180 FSVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLP 238 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 R ++++++ L K E+++LT+ LE Y + +S F Sbjct: 239 RAEFSDGLKQLEQAFVDYLNKL----KGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEF 294 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 ++F+YL ++ L+++D+ Q + + + LP Sbjct: 295 FLKH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITDRLREFKLLP--- 344 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----VVRPTGLLDPIIEVRPV 428 + +K + + +S + K + + + + +++ Sbjct: 345 -DLKVKIDGINLIKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQLITRQMQQY 403 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 Q+ L ++ + VL+ + L L + G I Sbjct: 404 FGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMN-------------FAI 450 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 D+ G + +G L G ++PE +V + + + ++ QT A Sbjct: 451 TDDILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQTFSNA-----E 503 Query: 549 KAILYGDKITPSMAKAIGETERRRE 573 K Y + T + R E Sbjct: 504 KITSYTELKTGDYVVHVNHGIGRYE 528 Score = 66.0 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 17/262 (6%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 T+ + P + G + + P P I+ + + I + + + Sbjct: 788 TLTATPIPRTLNMALVGARDLSVLETPPANRFP-IQTYVLEENWPVIADAIEKELSRGGQ 846 Query: 449 VLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + E ++ V Y+H ++ + +++ D G +DVLV ++ Sbjct: 847 TFFLHNRVQDIERTVGEIQRIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTII 906 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + + ++++ G + L Q GR R+ + Y P + Sbjct: 907 ETGVDIPNANTLIVENSERFGLSQ----LYQLRGRIGRSNR---LAYAYFTYPGDRQPTE 959 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + ++R E + + E G + D+ G K + E + Sbjct: 960 DAQKRLEAIRDFTE----LGSGFKLAMRDLSIRGAGDLLGKQQHGFIDSVGYE---LYQQ 1012 Query: 627 MSPKALQQKIHELEGLMMQHAQ 648 M +A+ QK + + +M +A+ Sbjct: 1013 MLQEAVSQKQGKDKKVMQTNAE 1034 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 98/542 (18%), Positives = 193/542 (35%), Gaps = 61/542 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S F ++ R+LE+ + ++G++ K + + P +VL ++ Sbjct: 2 SIFHEILNKLPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEA 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L + + + P+ D +V+ E +RL+ Sbjct: 62 NAKKLSDDYNQMAGGELSAVY-------------PAKDFTFRPIETVSREYEYIRLNVLS 108 Query: 129 AMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ R+ VV A + +A+ P L+ + G + ++ LA Y R Q Sbjct: 109 RIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + VRG ++D FP + +RVE + +E++ +S F+ + + + + I P T Sbjct: 169 DGSAQYSVRGGIVDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPAT 227 Query: 248 HYVT-PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 + E++ + + + + + + D++ ++ S I Sbjct: 228 EIIFSSPEQLREGINGL----------IRSLGSSPQADAAKLKLSNDIKRIDGGLDLSNI 277 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + Y R P TLFDY LL V E + + L+E G Sbjct: 278 DKYIPLAYDR-----PATLFDYF-ESPLLFVSEWSDLKESARAYEFQYQEDLKILLEEGE 331 Query: 367 RLPSALDNRPLKFEEFEALAPQ---TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 LD+ F Q + + N++L V+ + Sbjct: 332 LCKG-LDSFVKPFASVSEQIAQGKTVFFDTFAHANHDLRLKELITVNAM----------- 379 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + + + L ++ A + V++ T T++ A+ L LE+ G + + T Sbjct: 380 QTSSWSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATV---VPTG 436 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 E L G VL G +L G + P + I A + S+R + + G Sbjct: 437 E-------LTPGVVYVLAG--MLSSGFEYPAAKVALITHARIQNL--SKRKVKRRKGEEI 485 Query: 544 RN 545 R+ Sbjct: 486 RS 487 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 97/290 (33%), Gaps = 29/290 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L + + D V D I+ + + I++ + Sbjct: 766 VLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDG 825 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + + + R H + E I + L E D+LV + Sbjct: 826 QVYYIHNRVESIQSCAAQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTI 885 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+ + + I DAD G + L Q GR R+ +A Y T K + Sbjct: 886 IETGVDVSNCNTLIIEDADNMGLSQ----LYQLRGRVGRSKR-RASAYF---TFRRGKVL 937 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNVP 624 E +R + + G G + D+ G I + G + V Sbjct: 938 TEIASKRLSAIREFTKFG---SGFRIALRDLEIRGAGSILGERQHG--------HMEAVG 986 Query: 625 MDMSPKALQQKIHELEG-----LMMQHAQNLEFEEAAQIRDQLHQLRELF 669 DM + L + E +G + + +L E A D + L + Sbjct: 987 YDMYLRLLSDAVSEKQGVKPPTKVEECLIDLPME-AHIPEDYIENLAQRL 1035 >UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DUF1_STRAG Length = 451 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 84/479 (17%), Positives = 174/479 (36%), Gaps = 46/479 (9%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 Q + +R GL Q ++G +G+ K IA+ L + MV+ +T + + Sbjct: 5 ELFSQNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDK 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ E+ V F + D + + RLSA + + + Sbjct: 64 LSSDISSLIGEDNVYQFF-------------ADDVPAAEFIFSSLDKSISRLSALRFLKD 110 Query: 133 -RRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 ++ V++ S+S + L P+++ K +G + + L L Y + Q F Sbjct: 111 PEKNGVLITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSP 170 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG+++DIF + + R+E F +E++ + FD T + + + I P + Sbjct: 171 GEFSQRGDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDII 229 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 +A ++++ L +V L++ S I + Sbjct: 230 LQDADFERAKKKLEGYLVTASEVQRT--------YLSEVLSTTENHFKH----SDIRRFL 277 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + G + DY+P L VD+ + + + + ++ G S Sbjct: 278 SIFYEKEWG-----ILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKSH-S 331 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 +L+ +++ P T + + G L+ Q ++ Sbjct: 332 SLNYFSDPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFN 380 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q L+ EI + VL+ +++ L E L+E+G + + + ++I Sbjct: 381 QFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLDLIISDKNDIVQKESQLI 439 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 91/508 (17%), Positives = 174/508 (34%), Gaps = 52/508 (10%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +RL ++ G G++ + A + L R +VL ++ A ++ ++ Sbjct: 6 PEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLA 65 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 E + + + A V+ E RLS +A+ ++ Sbjct: 66 FLTGEQV--------------RTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLL 111 Query: 139 VASVS-AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V ++ A+ L + L VG D + L Y R +Q G F +RG Sbjct: 112 VCTIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRG 171 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++D + ++D +RVE F +E + + LFD T + V I P + Sbjct: 172 GILDFYSP-AEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLPQFAPGG 230 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A L A ++ + + L + + D E + E ++ Y + Sbjct: 231 YAGL-----LEAMDGLIARAKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYP-- 283 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 T DY P D +++ ES + + L+E G L L Sbjct: 284 ---HMATAADYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAG-VLAGELSEFAR 339 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV-VRPTGLLDPIIEVRPVAT-QVDDL 435 FEE + + + V Q RP LL+ + + P ++ Sbjct: 340 TFEE----------LCGVLEEWPVVYLDNFVGAQYPRRPRTLLNLLCKQLPSYGASLETA 389 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL-RL 494 +S++ N +V +++ A +L L E G + ++ L Sbjct: 390 VSDLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAV----------DFLLHKLPAP 439 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILD 522 G+ ++ + L G++ PE + + Sbjct: 440 GKA--VIAVGGLSGGMEYPEARCAVLTE 465 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 104/284 (36%), Gaps = 34/284 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L + + D D ++ + L +R+ Sbjct: 768 VLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQPVQTYVLEHDWGVLFDAMRRELERGG 827 Query: 448 RVL-----VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V V T+T R A + E L E V H + E +++ + GE DVLV Sbjct: 828 QVYYLHNRVETIT-RTAARIREMLGE-DVTVGVAHGKMSQEELNDVMTRMSEGEVDVLVC 885 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+ + + I DADK G + + I + +A Y +T Sbjct: 886 TTIIETGIDISNANTLIIEDADKMGLAQ-----LHQIRGRVGRSSRRAYAY---LTFRRG 937 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 K + E +R + E G G + D+ G N+ + G S Sbjct: 938 KVLSEVASKRLGAIREFAEFG---SGFKIAMRDLEIRGAGNVLGPEQSGFLMS------- 987 Query: 622 NVPMDMSPKALQQKIHELEGLM----MQHAQNLEFEEAAQIRDQ 661 V D+ K L++ + E G + + +L AA I D+ Sbjct: 988 -VGYDLYLKLLEEAVLEERGEKAQIPAECSADLS--VAASIPDR 1028 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 86/515 (16%), Positives = 185/515 (35%), Gaps = 63/515 (12%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + L+D + + G T + L + +++A N+ A + Y ++ Sbjct: 14 FEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSARKYYEDLFNI 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P + Y P D F+ S + + RL +L ++V Sbjct: 74 SPLRVLLY--------------PEKDIFLYDRDSKSRDNLKTRLGTISKILTDDWDIIVT 119 Query: 141 SVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 ++ A+ + D++LK L L ID +++ +L ++ Y R Q G F +RG + Sbjct: 120 TLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEGMGQFSIRGNI 179 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 IDI SD+ R+ELFD E++ + F+ + + + I I+P + + + A Sbjct: 180 IDI-ATFSDN--YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDILISEDDRLNA 236 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 ++I+ E+ + RL ++ + E Y + FL Sbjct: 237 AKKIENEIN------KTKLSGERKDRLFEKFSLYKNRLVEDEYIQNPDLIIPFL----NE 286 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 + + D++ D + +++E + + + + ++ +G LPS Sbjct: 287 DKLSGIIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEALPSH-------- 338 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + IY +L K ++ ++ P V + + S+I Sbjct: 339 --------KNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKSITNYRSKI 390 Query: 440 RQRAAI-------NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + +V++ + + A+ L +L E V + + + + Sbjct: 391 KLFREDLDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF---------KEDRNTEF 441 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + +V + G + +V I A+ G Sbjct: 442 AN---NFVVTTGSVNAGCEFALSKIVIINYAEIYG 473 Score = 65.2 bits (157), Expect = 9e-09, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 31/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 T+ +SATP L+ S + D V + +P E PV T V + + I + Sbjct: 768 TLTLSATPIPRTLQMSMIGIRDMSV----IEEPPEERFPVKTYVLEYNPLMVREAILREV 823 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 +V E + L E V ++ + ++ + + + G+ DVL+ Sbjct: 824 ERGGQVYFVYNRVANMEYKLQELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLL 883 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+ + + I D+++ G + L Q GR R+ + Y T Sbjct: 884 CSTIIETGMDVQNANTMIITDSNRLGLSQ----LYQLRGRIGRSSR---VAYA-YFTYEK 935 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEP 620 +I E ++R K K E G G + D+ G I +K G Sbjct: 936 DVSISEIAQKRLKTIKEFTEFG---SGFKIALRDLEIRGSGSILGSKQHG--------HI 984 Query: 621 DNVPMDMSPKALQQKIHELEG 641 DN+ D+ K L Q +++L+G Sbjct: 985 DNIGYDLYMKYLTQAVNKLKG 1005 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 103/512 (20%), Positives = 175/512 (34%), Gaps = 82/512 (16%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQ---RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 TL GS +A + Q + T ++ + T A +L EM F P+ F Sbjct: 10 KRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDLRYALF 69 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-----DVVVVASVSA 144 P +T S ++ + RL+ + +R DVV+V + +A Sbjct: 70 -------------PDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPATTA 116 Query: 145 IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFP 204 +Y L P V +D+ + +L Y+ Q G + VRG +ID+FP Sbjct: 117 LYRLAPPSFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDLFP 176 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 S + RV+LFD+E++ + FDP + + + +P + P + + + Sbjct: 177 MGSL-VPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDA--------R 227 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 + R + LL+ + +++ +M N SGIE Y + T Sbjct: 228 AKFRKRWRELLDGDPT--------KSRIYKDMGN-GVATSGIEYYLPLF-----FDETAT 273 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 +FDYL +D +V+ Q DR R LP + L E+F A Sbjct: 274 VFDYLGSDATVVLHGDLEPAFQRFWQDTKDRYRLVRDAPDRPALPPE--SLFLGAEQFYA 331 Query: 385 LAP--------------------QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 A + I P E G + + G P E Sbjct: 332 RANGYAQLALKAGSPHPNPLPGGEGIKGDLLPLQGGEESKGDLLPLPLGEGRGEGSPYTE 391 Query: 425 -----VRPVATQVDDLLSEIRQR-AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 V +D L+ + RVLV + E L ++L +S Sbjct: 392 FDSLPAMAVVRGAEDPLARFKGHVRNTAHRVLVLAESDGRRESLLDFLRASNVSPPAFNS 451 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 ++D + + + + L G Sbjct: 452 ----------LQDFQTSDEKLGIATAALNTGF 473 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 14/194 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + + D V T + V ++ + ++ E + + Sbjct: 800 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLRELKRGG 859 Query: 448 RVLVT---TLT-KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V T + E L E L E R+ H + E +++D +++L+ Sbjct: 860 QVYFLHNEVETIQNRREKLEEILPEA--RIAVAHGQMPERELERVMKDFVAQRYNLLLCS 917 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + + ADK G + L Q GR R+ + Y + P + Sbjct: 918 TIIETGIDVPSANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLMVPDIEG 970 Query: 564 AIGETERRREKQQK 577 + +R E Q+ Sbjct: 971 LTKQASQRLEAIQQ 984 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 124/308 (40%), Gaps = 38/308 (12%) Query: 31 GLAHQTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F + + Sbjct: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG 149 +T S ++ I RLS + + V++ V+ + Sbjct: 72 D--------------WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 Query: 150 DPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 P +L L + G + + A+ +L Y DQ + G + RG ++D+FP S+ Sbjct: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 + R++ FD+E++ L +FD + + + + + P + T + I + ++ Sbjct: 178 -LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 +R E Q ++ L +GIE + EP P LF Y Sbjct: 237 VKRDP---------EHIYQQVSKGTLP--------AGIEYWQPLFFS----EPLPPLFSY 275 Query: 329 LPADGLLV 336 PA+ LLV Sbjct: 276 FPANTLLV 283 Score = 68.3 bits (165), Expect = 8e-10, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 14/188 (7%) Query: 392 VSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQV--DDLLSEIRQRAAIN 446 ++ATP L + + D + P L VR + V + +L EI + + Sbjct: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ AE L E + E + H + E ++ D F+VLV ++ Sbjct: 814 YLYNDVENIQKAAERLAELVPEARIAIG--HGQMRERELERVMNDFHHQRFNVLVCTTII 871 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + I AD G + L Q GR R+ + Y +TP Sbjct: 872 ETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAWLLTPHPKAMTT 924 Query: 567 ETERRREK 574 + ++R E Sbjct: 925 DAQKRLEA 932 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 121/646 (18%), Positives = 223/646 (34%), Gaps = 121/646 (18%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 + L E L H L G+ K ++++ L++ +V+ A + +++ Sbjct: 54 KDLREKL-QKRGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMG 112 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVVV 138 +Q + P+S+ + + ++ +++ + + Sbjct: 113 --------------WQTVNFYPTSEASPYDPGRLESEMVWGQMQVLAELIQGHQVKGKAI 158 Query: 139 VASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 VA+ A+ P + L L G +D +++ LA L Y R G + RG Sbjct: 159 VATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRRG 218 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +++DIFP S ++ +R+E F +E+E++ FDP + + + + + P + Sbjct: 219 DIVDIFPV-SAELPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTSFD-------- 269 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + I+ L A+ L + E ++L G E RFL Sbjct: 270 ---QVIEPALNAQAIDLSAWGEDAETEQLF-----------------GKEGLQRFL--GL 307 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD--NR 375 P L DYLP + + V+DE A E E + SAL N Sbjct: 308 AFTEPACLLDYLPTETVCVLDEPEQCA-----------AHSERWFEAVAQDWSALQLPNL 356 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 P F AL + E+ ++ GD +D RP + + Q L Sbjct: 357 PQLHRNFSALGDRLKTDFQYITLSEIHEANGDSLDISARP---------IPTMPHQFAKL 407 Query: 436 LSEIRQRAAINERVLV----TTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVERMEII 489 +R + I + + T L L+EH V+++ + D +E+ +I Sbjct: 408 AEILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIEKSQIQ 467 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAA----- 543 R ++ L + EG +P LV + D + G + ++ RA Sbjct: 468 RTAVTLKYSGLAEL----EGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVD 523 Query: 544 --RNVNGKAIL------------------------YGDKITPSMAKAIGETERRREKQQK 577 + G ++ Y D I A ++ R R + Sbjct: 524 INKLSPGDYVVHKSHGIGKFLKLDALANREYLMIQYADGILRVPADSLDSLSRFRHTGTR 583 Query: 578 YNEEHGI-------TPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 E H + T + K V + N+ +AK G + P Sbjct: 584 PPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYP 629 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 99/263 (37%), Gaps = 33/263 (12%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-----DDLLSEIRQRA 443 + ++ATP L S + + + T P RP+ T + + + + IR Sbjct: 797 VLTLTATPIPRTLYMSLSGIREMSLITT----PPPSRRPIKTHLSPYNPEVIRTAIRNEL 852 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 +V E+L L + R H ++ E + GE D+LV Sbjct: 853 DRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILV 912 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKA-ILYGDKITP 559 ++ GLD+P V+ + + DA K G + L Q GR R+ + A +LY + Sbjct: 913 CTTIIEAGLDIPRVNTIIVEDAQKFGLAQ----LYQLRGRVGRSGIQAHAWLLYPN---- 964 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K + E R R + + + G Q + + + N+ + G + Sbjct: 965 --QKQLTEKARLRLRALQEFSQLGSGYQLATRDME--IRGVGNLLGAEQSG--------Q 1012 Query: 620 PDNVPMDMSPKALQQKIHELEGL 642 + + + + LQ I E++G Sbjct: 1013 MEAIGYEFYMEMLQDAIKEIQGQ 1035 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 88/523 (16%), Positives = 169/523 (32%), Gaps = 52/523 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + + L GV GSG + A + A +V+ P++ A E++ + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P+ Y P + K S + R++A +L RR+ ++V Sbjct: 62 LPKGKRRVI-----------YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVG-MIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 V + P L L + ID+ ++ RL Y R + G + VRG Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F S +R+ELF + VE L F P+T + + I I P V + + Sbjct: 171 ILDVFSP-SATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDPAELPE 229 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + +++ + + ++ + E G G+E + Sbjct: 230 ILGRLRKA-------------GADAGVDPVVIRGHVDKIREEGRFPGMEGMLSIVYP--- 273 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF--RLPSAL--DN 374 + DY+P L +++ + R + + P +L + Sbjct: 274 --ELDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALAENRLSVTPESLYIEW 331 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 +K FE ++ + D+ D T L + Sbjct: 332 SQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDN----TFLSSTLKGEGKTEALFQP 387 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS---DIDTVERMEIIRD 491 L + R + + ++ L L +G +L + + I Sbjct: 388 LADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKGFEEVENQKPGIYCIPG 447 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 G L G PE + + + + G R + Sbjct: 448 YASGN---------LTRGFVFPEQGIALVTNQEIFGAKRRRSA 481 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 94/259 (36%), Gaps = 25/259 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S + D + T +D V ++ D + + Q+ Sbjct: 771 VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGG 830 Query: 449 VLVT--TLTK---RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + K + AE+L + + E R+ H ++ + + E D+LV Sbjct: 831 QIFFIHNNIKTIFKTAENLKKLVPE--VRIAVAHGRLNEASLEKAMLQFINREIDMLVCT 888 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + I AD G + + Q GR R G+ Y P + Sbjct: 889 TIVESGLDIPSANTMIINRADMFGLAQ----IYQLRGRIGR---GEEQAYAYLFVPEEHR 941 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ++R EH G + D+ G A G S+ V Sbjct: 942 LTRDAQKRLAALM----EHRDLGSGFQIAMKDLQIRGAGSA------LGGSQSG-HVAAV 990 Query: 624 PMDMSPKALQQKIHELEGL 642 DM K L + + +L+G Sbjct: 991 GYDMFLKLLDEAVADLKGQ 1009 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 128/329 (38%), Gaps = 39/329 (11%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 H+ L V I+ + Q T+V+ P+ A +L + E ++ + Sbjct: 17 HKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQDVCLF----- 71 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDL 153 P +T S ++ I RLSA + + + + +S + P Sbjct: 72 ---------PDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQ 122 Query: 154 YLKM-MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 YL+ +L + G + + +L Y +Q + G + VRG ++D+FP S + Sbjct: 123 YLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-VPF 181 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ FD+E++ + FD T + + I + P + T + I + +E R+ Sbjct: 182 RLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRR 241 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + Q+ +++ SGIE + TLFDYLP Sbjct: 242 ---------DPEHIYQQ-------ISKGTLISGIEYWQPLF-----FAEMATLFDYLPEQ 280 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETL 361 L V E++ T Q Y+ + R E Sbjct: 281 TLFVDMENNQT--QGERFYQDAKQRYEQR 307 Score = 68.3 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 12/184 (6%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL--SEIRQRAAINERV 449 ++ATP L + + D + T + ++ Q DDL+ I + +V Sbjct: 756 LTATPIPRTLNMAMNGIRDLSIISTP-PARRLSIKTFVRQNDDLVVREAILREILRGGQV 814 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 E+ E L R + H + E ++ D ++VLV ++ Sbjct: 815 YYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIE 874 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 G+D+P + + I AD G + L Q GR R+ + Y +TP + Sbjct: 875 TGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPPPKMMTKD 927 Query: 568 TERR 571 ERR Sbjct: 928 AERR 931 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 94/492 (19%), Positives = 161/492 (32%), Gaps = 68/492 (13%) Query: 39 GVTGSGKTFTIANVIA--DLQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 G GS IA +A Q P + V+ N A +L E++ F P+ V Sbjct: 85 GAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDARVRV------- 137 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLY 154 +P +T S ++ + RL+ + E R D+++V + +A+Y + Sbjct: 138 ------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFL 191 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 T G +D+ + +L Y Q + G + VRG +ID+FP S + R+ Sbjct: 192 AAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGS-PLPYRI 250 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 +LFD++V+ + FDP T + + + + P + +E Sbjct: 251 DLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFE------ 304 Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 + +GIE Y + TLF YLP + Sbjct: 305 ---GDPSRAPIYKD--------IGNGVPSAGIEYYLPLF-----FDETATLFHYLPENAQ 348 Query: 335 LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSA 394 LV + + A + + S RP+ PQ +++S Sbjct: 349 LVFT------GDLDAAIKRFTADTKQR----YAFLSHDRERPILE-------PQRLFLS- 390 Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTL 454 Y L K +V G P+ + L + N RVL T Sbjct: 391 DDDFYLLAKPFARIVLPAQPSGGWAAPLPNLALDRHADAPLAAFAAYLETTNNRVLFTVE 450 Query: 455 TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + E + + EH R +E LG + L G +P Sbjct: 451 SAGRRETIAQLFAEHHLRPA---GSDSFAAWLETDERFALG-------VAPLASGFAVPG 500 Query: 515 VSLVAILDADKE 526 + + + Sbjct: 501 EGYAIVTETELY 512 Score = 64.8 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 14/217 (6%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + + D V T + V + + ++ E + + Sbjct: 814 VLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRGG 873 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E+ LEE R + H + E ++RD +VL+ + Sbjct: 874 QVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTTI 933 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P + + + ADK G + L Q GR R+ + +A Y P +A+ Sbjct: 934 IETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHH-QAYAYLLVHDP---QAL 985 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + +RR + + EE G G + D+ G Sbjct: 986 TKQAQRRLEAIQQMEELG---SGFYLAMHDLEIRGTG 1019 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 153/447 (34%), Gaps = 53/447 (11%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 L+ + +L ++ S + ++L N A + ++ F Sbjct: 17 SLKGQTSTWSLNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFA----- 69 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 + P P +T S ++ I RL + + +++ VS + Sbjct: 70 -------ETDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLI 122 Query: 147 GLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P ++ K L G +D A R+L Y R Q + G F VRG +ID++P Sbjct: 123 QKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPM 182 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 183 GS-RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRS 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + N++L + Q G+E Y T Sbjct: 242 HFGDDAR----NSQLYRSVKDGQTVD-------------GLEYYLSLF-----HSNIATF 279 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE--FE 383 FDYLP+D L QI ++ + R + ++ P + + + E F Sbjct: 280 FDYLPSDCLFF--NQGDLQAQIRQNWQDYQERY-DIAQHNPDYPVLVPSELILSENETFS 336 Query: 384 AL-APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 AL A I S P + + + + P+ ++ Q Sbjct: 337 ALKAFHRIQFSLQPTDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQ---------YA 387 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEH 469 + N R+L + E L L +H Sbjct: 388 SEHNGRILYCAESTGRRETLLTILSKH 414 Score = 76.4 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 14/194 (7%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINERV 449 ++ATP L + D+ D + T + V D++ E +R+ + Sbjct: 767 MTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQTFVQDWNPDVVKEACLREIRRGGQIY 826 Query: 450 LVTTL---TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 L+ ++MAE++ L E +V H + E +++++ F++LV ++ Sbjct: 827 LLFNNVDKIEQMAEEIQALLPEA--KVETAHGQMHERELEQVMQNFYHRRFNILVCTTII 884 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + I ADK G + L Q GR R+ + Y T A Sbjct: 885 ETGIDIPTANTILIHRADKFGLAQ----LHQLRGRVGRSHHK---AYAYLFTAGKALMTK 937 Query: 567 ETERRREKQQKYNE 580 + E+R K++ Sbjct: 938 DAEKRLTAIAKHDT 951 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 173/471 (36%), Gaps = 68/471 (14%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L L + GV G + + + L RP + + P+ A QL ++ F Sbjct: 1 MDDLIRSLGQCKEPLDIYGVRGGAVAWLVGRL-GGLARPLLCVCPDDEQARQLATDLALF 59 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 P + P + + RL+A A+ + ++V Sbjct: 60 SD--------------LPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMV 105 Query: 140 ASVSAIYGLGDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ A+ P L+ + L + G D + RLA Y R + G + +RG Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER--I 256 +IDIFP + LR++ F + VE + FDP++ + V + + P + + P Sbjct: 166 IIDIFPPG-QEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPAADSPA 224 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 QA+ E + AA + + ++ LE E + + +G + + L Sbjct: 225 QQALLERHRQWAASLQWDRQPSRQLE------------ECLRQHRPFAGDQFFLPLLEPA 272 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR--KETLVEYGFRLPSALDN 374 + YLPA+ L ++ H + Q ++R A +E LP D Sbjct: 273 AL-----SPLAYLPANTL-IIQVDHPRLLQNLALHRERIASNYQELTATAQPALPP--DE 324 Query: 375 RPLKFEE----FEALAPQTIYVSA-----TPGNYELEKSGGDVVDQVV----RPTGLLDP 421 L E+ FE A I+ A +++E ++ Q + R GLL P Sbjct: 325 LFLSAEQLHGHFEQAAGARIFPLAPGEANGQRVFQIEAGNHVLLKQQLDLKRREEGLLAP 384 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 L +I+Q ERVL+ T R A + E L HG Sbjct: 385 -------------LAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVT 422 Score = 78.7 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 97/261 (37%), Gaps = 23/261 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVD-QVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L+ S V D V+ L ++ +A D ++ E I + + Sbjct: 753 VLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTF-IARHDDLVIKEAIMRELGRD 811 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + ++ ++ H + + EI+ E +VLV Sbjct: 812 GQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQLEEIMVRFVRREINVLVCTT 871 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P+ + + I AD+ G + Q GR R+ Y + P++ Sbjct: 872 IIESGLDIPDANTIIITRADRLGLA----EIYQLRGRVGRSRQQ---AYAYLLVPALDDL 924 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 GE R + YNE G G + D+ G +++ V Sbjct: 925 AGEARHRLQALMDYNELGG----GFKLALSDLQIRGGGNILGESQSGN-------IAAVG 973 Query: 625 MDMSPKALQQKIHELEGLMMQ 645 DM LQ+ + +L+ + + Sbjct: 974 YDMYLDLLQKTVLDLKRRLRE 994 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 86/491 (17%), Positives = 157/491 (31%), Gaps = 77/491 (15%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 P I++L + L+ + L +T ++ + P +++ A + E Sbjct: 3 DPITIQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARE 62 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML----- 131 + F + V P+ +T + S + RL+ ++ Sbjct: 63 LLFFGAQRGVHILP-----------FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKS 111 Query: 132 ----------ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + R VV+ + + L + + +VG ++ L Y Sbjct: 112 GPISIGNELGDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGY 171 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 Q + G + RG +ID+FP D+ +RVELF +EVE + LFDP + + IP Sbjct: 172 NPVSQVSEPGEYAARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAV 230 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + P + + I +E L ++ + + Sbjct: 231 EVLPVREVILNADTISCFRTAYREVFGGYAAEDLIYKEISQNRTYQ-------------- 276 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKE 359 G+E Y TLFDYLP L ++ D + + + R + Sbjct: 277 ---GMEQYLPLFYP-----DLDTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAYQ 328 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + + +A T+Y+ L+ + +P L Sbjct: 329 ---------AGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKPALDL 379 Query: 420 D----PII-------------EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 D P I E + AT +D L +I R+ + T E + Sbjct: 380 DLHPIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERM 439 Query: 463 TEYLEEHGERV 473 E L +H V Sbjct: 440 RELLTDHKVSV 450 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 18/196 (9%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD--LLSEIRQRAAINERV 449 ++ATP L + V D + + D + +R + T D + I + +V Sbjct: 793 LTATPIPRTLNMAMAGVRDISIIASPPADRL-AIRTIITHYDKQQVREAILRELYRGGQV 851 Query: 450 LVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + R A+++ E + E RV H + + +++ + F++LV Sbjct: 852 -FYVHNQVQDIERKAQEIAELVPEA--RVGVAHGQMRENQLEKVMMEFYRQTFNILVCTT 908 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I ADK G + L Q GR R+ + Y + P + + Sbjct: 909 IVENGVDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSKHR---AYAYMLVPHLRRL 961 Query: 565 IGETERRREKQQKYNE 580 E+R E + E Sbjct: 962 TKHAEKRLEALESLGE 977 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 104/558 (18%), Positives = 182/558 (32%), Gaps = 108/558 (19%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS +A A P +++A N A +L E+ F P+ V Sbjct: 52 LQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVHL----------- 99 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------------------------- 130 +P +T S ++ + RL+ + Sbjct: 100 --LPDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPASGRGSERENQSS 157 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 DV+VV +A+Y L L G +D A +++ Y Q Sbjct: 158 TSACDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTP 217 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G + VRG +ID+F S + R++LFD+E+E ++ FD T + + +P + P + Sbjct: 218 GEYCVRGGIIDLFAMGSV-LPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREFP 276 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + + ++ +++ +GIE Y Sbjct: 277 LDEKGQATFRQNFRDRFEGDPSKSRIYKD-----------------VSKGIAPAGIEYYL 319 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP- 369 + TLFDYLP L + H + + + D A + L+ + P Sbjct: 320 PLF-----FDQTATLFDYLPKIATLCL---HHNVDEAITSFGKDAASRYNLLRGDPQHPL 371 Query: 370 SALDNRPLKFEEFEALAPQ-----TIYVSATPGNYELEKSGGDV---------------V 409 L E+F A + I SA L + G++ Sbjct: 372 LETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLPEGEGNLSSLSPGEGVGVREDSK 431 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + T + PI R +R A RVL+ + E ++ YL+E+ Sbjct: 432 NTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYAG---RVLLLAESLGRREIMSGYLKEY 488 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL 529 G E G+ ++G+ ++ G +P+ L + + E + Sbjct: 489 GLTPAVC----------EDYASFLAGQDKFMLGVGPVQIGFSLPDEQLAIVTE--TELYA 536 Query: 530 RSERSLIQTIGRAARNVN 547 RS RAAR N Sbjct: 537 AQPRS---RANRAARKSN 551 Score = 61.7 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 37/244 (15%) Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS--ALDNRPLKFEEFEALAPQTI 390 GL+++DE H Q + RA + L +P A+ L+ A APQ Sbjct: 809 GLVILDEEHRFGVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQR- 867 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + + S G + + V+R + + + ++L Sbjct: 868 --RLSIKTFVSGFSQGVIREAVLRELKRGGQVYFLHNEVDTIANML-------------- 911 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 E L L E RV H + + ++RD F+VL+ ++ G+ Sbjct: 912 ---------EKLETLLPEARIRVA--HGQMGERDLEAVMRDFHHQRFNVLLCSTIIETGI 960 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 D+P + + + AD+ G + L Q GR R+ + Y + SM + ++ Sbjct: 961 DVPTANTIIMNRADRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVDSMDGLTAQAKK 1013 Query: 571 RREK 574 R E Sbjct: 1014 RLEA 1017 >UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09E47_STIAU Length = 494 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 147/384 (38%), Gaps = 42/384 (10%) Query: 1 MSKPFK-------LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI 53 M PF L A P+GD RL E L+ G +T G+ G+ + +A + Sbjct: 38 MDTPFSQTAGSEALRGAVPPTGD---PFARLLERLQPGHRART-QGLHGAARGHVLARLS 93 Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 L+ P + +A ++ A L G++ F N +P+ + + Sbjct: 94 RTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPR-------VLRLPADEVLPYDEL 146 Query: 114 SVNEHIEQMRLSATKAMLER-RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRA 171 S HI RL + + R +V S+ A+ P + LT G ID+ Sbjct: 147 SPEPHIVSERLGTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDT 206 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 + R+L + Y + GTF VRG ++D+F + +R+E F + +E + LF+P Sbjct: 207 LARQLVLMGYQSSPLVEDPGTFSVRGGILDVFSPLYER-PVRLEFFGDTIESIRLFEPDN 265 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V ++ ++ P + + +A + + ++ L +L +R Sbjct: 266 QRTVDSLKEVSLVPARELLLTDQTRAKAEATARA---------VADHINLPTIKLRER-- 314 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIG 348 L+ + E G+E G T+FDYL + + D+ Sbjct: 315 --LDALREGLPGFGLEGLLPGFFEGGL----ATVFDYLRLWAREPVFYFDDPVGLERAAT 368 Query: 349 GMYRG-DRARKETLVEYGFRLPSA 371 ++ +R+ +E LP + Sbjct: 369 DLWEELERSHQEADARQDLTLPPS 392 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 99/520 (19%), Positives = 183/520 (35%), Gaps = 90/520 (17%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + ++++++ L+ G Q + G++G+ +F +A + MV+ P++ A L E Sbjct: 10 EAPSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPAG-MVIVPDEETALTLAAE 67 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 +K + E + + F + + + + RL + A+ R+ V Sbjct: 68 LKLLWGEEVFVFLP--------------REIFGLGPSLPSAFVPRQRLLSLAALARRQGV 113 Query: 137 VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 VV + + + GL P+ + L G + + +RL E Y R G F R Sbjct: 114 VVATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARR 173 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G ++D FP S + +RVE +E+ R++ FDP + + + + + P P Sbjct: 174 GGIVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVPNPCTGR 232 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF--LS 314 E++ E + S E+ + + Sbjct: 233 --------------------------------------EILPESWFLSQGEDSFPYPEVL 254 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 +L YLP L + E+ ++ +LP Sbjct: 255 LPCLFPRVVSLLAYLPPGAPLALVEAQAAEKAAREAEERQMEICREMIAK-KKLPEESRK 313 Query: 375 RPLKFEEFE---ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L + E +L P + +S P G+V+ VR + Sbjct: 314 AFLSWSEVAKELSLYPHRLRLSFLPEK------NGEVLGLAVRT---------APSFLGK 358 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L EI++ + RV++ + + + E L+E+G R L D V Sbjct: 359 FAQLAEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGIIPR-LTPDSAPV-------- 408 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 G V+ G N LREG PE V + A+ G ++ Sbjct: 409 ---GTVTVVKGGN-LREGFIFPEAQFVLLTPAEIFGRRQA 444 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 54/257 (21%), Positives = 98/257 (38%), Gaps = 21/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S + D T D + +E V + IR+ A Sbjct: 734 VLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRRELARGG 793 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ +++ RV Y H + I+ D ++DVLV + Sbjct: 794 QVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDVLVATTI 853 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ V+ + + DAD+ G + L Q GR R + Y + K I Sbjct: 854 VENGLDIGNVNTLIVKDADQLGLSQ----LYQLRGRVGRTNR---LAYAYFL-YRRDKII 905 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E + R + K G + + + + N+ T+ G ++ V + Sbjct: 906 NEAAKARLRAIKDFTSLGAGFKVAKRDLE--IRGAGNLLGTEQHGHIQA--------VGL 955 Query: 626 DMSPKALQQKIHELEGL 642 ++ + LQ+ I EL+G Sbjct: 956 ELYCRLLQEAIKELKGE 972 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 89/465 (19%), Positives = 157/465 (33%), Gaps = 43/465 (9%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 +++ E L L G+ +G+ A + DL R ++ P + A ++K Sbjct: 11 EYQKIAESLHT-PGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEATHFADDLKA 69 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVV 139 AV P D + E RLS A+ R V Sbjct: 70 LGLTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVC 114 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ P D +L+ L L GM+ ++ A++ RL Y R Q G F VRG+ Sbjct: 115 VPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGD 174 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DI+ A RVE +D+E++ L+ FD LT + ++ + + P + Sbjct: 175 IVDIY-APDMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREVLFGST---- 229 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 E A + ++ + + + + T+ DL ++ ++ Y Sbjct: 230 ------AETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKYYGIRYP--- 280 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 P TL D+L + V+DE L+E G P LD Sbjct: 281 --QPATLLDHL-DSPIFVLDEVGGIRDAQKATEYRRGEELTGLLEEGVLCPG-LDVLYQT 336 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 ++ A + + N+ + + D + + L + Sbjct: 337 MDDLAIAAQKQ--STLLCENFLRGMNEFKLKDLINVEA------FAAPNWGGDLASLRED 388 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 + A V + + T + A LT L + G V Sbjct: 389 LDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVSMSRDVRPAK 433 Score = 75.2 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 97/258 (37%), Gaps = 29/258 (11%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSE-IRQRAAIN 446 +SATP L + + D + P IE +PV T V D +L+E +++ A Sbjct: 766 LSATPIPRTLNMAMSGIRDLST----IEQPPIERQPVETFVLEYNDVILAEAMKKELARG 821 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V E ++ + RV H + E + + L GE D+LV Sbjct: 822 GQVYYLHNRVDNIESTAAHVSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTT 881 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 L+ G+D+ + + I DAD+ G + L Q GR R+ KA Y T K Sbjct: 882 LIETGIDVRNCNTLIIEDADRMGLAQ----LYQIRGRVGRSGR-KAYAYF---TFRRDKT 933 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + + ++R + G G + D+ G ++ + V Sbjct: 934 LTDIAQKRLSAIREFTAFG---SGFRIAMRDLQIRGAGSLLGHSQHG-------HMEAVG 983 Query: 625 MDMSPKALQQKIHELEGL 642 D+ K L Q I +G Sbjct: 984 YDLYVKMLGQAIARAKGE 1001 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 85/474 (17%), Positives = 164/474 (34%), Gaps = 72/474 (15%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 ++ +A + +R +VL + A +L + F P + + Sbjct: 17 LSQGSLPLALARYLPH-KRLKVVLTQDAEQALRLQTAWRFFRPHDTAVF----------- 64 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMM 158 +P +T + S ++ + RLSA + DV+ V +A+ L Sbjct: 65 --LPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRT 122 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L G +D + L + Y G F VRG ++D+FP S+ + R++LFD Sbjct: 123 FWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLFD 181 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 +E++ + FD T + +S + + P + T E +EE+ + Sbjct: 182 DEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEV---------DG 232 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV-V 337 + + + +G+E Y TLFDY+ D L V + Sbjct: 233 NPNDAAVYKAVSN--------GHFGAGVEYYLPLFFEN----ELETLFDYIGEDALFVSL 280 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + H + + A + Y LP Q +Y+SA Sbjct: 281 GDVHAEANRFWSDVKSRYAMAQGDETYPPLLP------------------QHLYLSADVF 322 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTK 456 L+ G + D + L D V Q D+ L ++ + A R+L+ + Sbjct: 323 AGRLKNYGQVLPDVSGKEHALPDL-----AVNRQSDEPLQALKDFQTAFEGRILLCAESL 377 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 E + +L+++G + + + + +++ + L G Sbjct: 378 GRRETMLGFLQQNGLKAKSVSD----------WQGFLSAHEPLMITVAPLAYGF 421 Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 99/255 (38%), Gaps = 27/255 (10%) Query: 392 VSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 ++ATP L + + D + P+ L V+P + + + + + Sbjct: 983 MTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEG--SVREAVLRELKRGGQ 1040 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 V E++ E LE R H + E +++RD F+VL+ ++ Sbjct: 1041 VFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTII 1100 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + I ADK G + L Q GR R+ + Y +TP + I Sbjct: 1101 ETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTP---EYIT 1150 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + +R +E G G + D+ G + G G+S +++ V Sbjct: 1151 KDAEKRLDAIAAADELG---AGFTLAMQDLEIRGAG----EILGEGQSGEMIQ---VGFT 1200 Query: 627 MSPKALQQKIHELEG 641 + + L+Q + +L+ Sbjct: 1201 LYTEMLKQAVRDLKK 1215 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 195 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 94/516 (18%), Positives = 172/516 (33%), Gaps = 66/516 (12%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRP---TMVLAPNKTLAAQLYGEMKEFFPENAV 86 T G+ GS IA + ++ A +L E+ F P+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS-AI 145 +P + S ++ + RL+ +L +V+ V+ A+ Sbjct: 75 RL-------------LPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTAL 121 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 LG P+ G +++ A+ +L + Y + G + +RG + D+FP Sbjct: 122 QRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ R++LF +E+E++ F+P T + + + + P + +E Sbjct: 182 GS-NLPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + + +GIE+Y E +L Sbjct: 241 VFEGDPS----------RCSIYKDASLGIP-------SAGIESYLPLF-----FEENSSL 278 Query: 326 FDYLPADG-LLVVDESHVTIPQIGGMYRGDRARKETLVE--YGFRLPSALDNRPLKFEEF 382 FDYLP G + + I G ++ +R E L LP L +EF Sbjct: 279 FDYLPRSGDPVWLVSIGDVEETIKGFWKDTLSRYEFLKHDLDRPILPP--KELFLDVDEF 336 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 + Y + N +EK+ V + DPI +R V Sbjct: 337 --FSTSKPYARLSLENEAVEKNEFFAVPDISVHRRDADPISRLRNVV------------- 381 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME----IIRDLRLGEFD 498 A+ N RVL+ + + E + L + V + + E I ++ Sbjct: 382 ASENVRVLICSDSAGRKESI-RQLFDESNSVASVDGKSLYSLKPEGFDSIAEFIKSESLF 440 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 LV L G P +L+ I +A+ +R Sbjct: 441 GLVTAPLFN-GFSWPSENLIVITEAELFTTTTRQRR 475 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 97/257 (37%), Gaps = 31/257 (12%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 ++ATP L + + + + T + V + DD++ E + + +V Sbjct: 777 LTATPIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVY 836 Query: 451 V------TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 T ++ A L E + E R+ H + E ++R+ ++L+ Sbjct: 837 FLHNEVETIQNRKHA--LQELIPEA--RISVAHGQMHERELESVMREFVTQRTNILLCTT 892 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + ADK G + L Q GR R+ + Y + P+ ++A Sbjct: 893 IIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHR---AYAYLLVPN-SEA 944 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAKTKAKGRGKSRPIVEPDNV 623 + + + R + EE G G + D+ G + K G E + Sbjct: 945 LSKQAQLRLNAIQAMEELG---SGFYLAMHDLEIRGAGEVLGDKQSG--------EIHEI 993 Query: 624 PMDMSPKALQQKIHELE 640 + + L + + L Sbjct: 994 GFQLYTEMLNRAVKSLR 1010 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 122/660 (18%), Positives = 206/660 (31%), Gaps = 89/660 (13%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 D L +E + GV+G K I ++ A R +VLA ++ +L Sbjct: 9 DGVTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRLCN 68 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 ++ V P+ D + E RL ML+ Sbjct: 69 DLSSMGTAALV---------------YPARDFNFRAAEGQSREYEHQRLQVMAGMLDGDY 113 Query: 136 VVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VV++ + A PD L L G I L+ Y R Q G F Sbjct: 114 QVVISCIDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQFA 173 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTHYVTPR 253 VRG ++D F +RVE + +E++ L FDP T + + T+ P T + Sbjct: 174 VRGGILDFF-TPDASAPVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLVSS 232 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 LA + + L + R +R + + + + + L Sbjct: 233 PG----------SLAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADKFLPLL 282 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 P TL DYL + L+ E ++ + +E G Sbjct: 283 YP-----SPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEG-------- 329 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR--PVATQ 431 + + +A + IYV + + V P L + + Sbjct: 330 ---ILCKGLDAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPLSSLINLNARQLSVWGGG 386 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L ++ + R++V T+R A E L+ G Y R + Sbjct: 387 MQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEY---------RDDAKTL 437 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 LG VL G L G + P + I + R R N K I Sbjct: 438 F-LGRVTVLPGS--LSAGFEYPTANFALITHGHFAAAPKRARK---------RQKNAKEI 485 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 ++ P + H + QG+ K + + AKG Sbjct: 486 YSLSELAPG-----DYIVHSAHGVGVFEGIHKLEMQGVTKDYLKV---------RYAKGD 531 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P+ + D V + PK + +++ L G Q A+ A++R + + + I Sbjct: 532 ILYVPVTQLDMVSKYIGPKEEVKVRLNRLGGQDWQKAK-------ARVRSAVKDIAKELI 584 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 98/269 (36%), Gaps = 26/269 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L + + D D ++ + + +R+ Sbjct: 766 VLTLSATPIPRTLNMALSGIRDMSSLEEAPQDRHPVQTYVLEYDQAVINDAVRRELRRGG 825 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E + L+ +V + H + E E+ R + E +VLV + Sbjct: 826 QVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLVCTTI 885 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + I DAD G + + I + +A Y +T + K + Sbjct: 886 IETGVDVPNVNTIIIEDADHMGLSQ-----LHQIRGRVGRSSRRAYAY---LTFTRNKVL 937 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E ++R + E G G + D+ G NI + G + V Sbjct: 938 SEISQKRLAAIREFTEFG---SGFKIAMRDLELRGAGNILGGEQHG--------HMETVG 986 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE 653 DM + L + + E +G + A + E E Sbjct: 987 YDMYLRLLGEAVSEEKG---EEASSYELE 1012 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 118/326 (36%), Gaps = 35/326 (10%) Query: 59 PTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH 118 PT+ + + A + +++++ + V P +D + S Sbjct: 64 PTLYITLSAESALRAADDLRQWLGSDQV-------------WLFPPADALPYEQMSPGRD 110 Query: 119 IEQMRLSATKAMLERR-DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRL 176 + RL+ + + V+V SV A+ P + L GM + + L Sbjct: 111 VLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTL 170 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 + Y R + G RG ++D++P D++ LR+E FD+E++ L FDP T + Sbjct: 171 LDNGYQRVAMVEEPGELSRRGAILDVWPPG-DELPLRIEWFDDEIDSLRRFDPATQRSEQ 229 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + R I P P R +A+ I ++ + + + E Sbjct: 230 RLERADIGPPHE--IPFWRRDEALRRIDALDMSQLR-----------REVRDEWAVAREQ 276 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 + G Y+ F + TL DYLP ++ + E H+ + Sbjct: 277 LAGGQRFEGRAFYAPFFY-----DQTATLLDYLPPQSMVALAEGHLLAQHADEIDVQAAG 331 Query: 357 RKETLVEYGFRLPSALDNRPLKFEEF 382 ++ L+ G LP L++ E Sbjct: 332 YRDQLLALG-ELPPDFPRPYLRWSEL 356 Score = 78.7 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 100/264 (37%), Gaps = 23/264 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + + D V T D I V D L+ E IR+ Sbjct: 765 VLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREG 824 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V V + + E L R H + E +++ D G +DVLV + Sbjct: 825 QVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTI 884 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I DA G + L Q GR R +A Y + + A+ + Sbjct: 885 IESGLDVPNANTIIIDDATNYGLAQ----LYQLRGRVGRGAT-RAYAY---LLYNAARVM 936 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 R R + + E G G + D+ G N+ + G V Sbjct: 937 TNDARLRLEAIQEATELG---AGFRIAMRDLEIRGAGNLLGAEQSG--------HIAAVG 985 Query: 625 MDMSPKALQQKIHELEGLMMQHAQ 648 D+ + L+Q + +L+ + + A+ Sbjct: 986 FDLYSRLLEQAVRKLKQDVDELAE 1009 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 79/460 (17%), Positives = 160/460 (34%), Gaps = 28/460 (6%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 ++ + L G +T G+ G+ + +A + L+ P + +A ++ A L ++ F Sbjct: 31 FAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFF 89 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 +P+ + + S + RL A + + R +V Sbjct: 90 LGGQGSLLAPR-------VLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALV 142 Query: 140 ASVSAIYGLGDPDLYLKM-MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 SV A++ P ++ + VG D+ ++ RRL + Y + GTF VRG+ Sbjct: 143 LSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGD 202 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F D +R+E F + +E + FDP + + V + + P + E + Sbjct: 203 LLDVFSPLYDK-PVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPR 261 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A + + + L +L ++ L+ + E G+E G Sbjct: 262 AESAARA---------VADRINLPTIKLREQ----LDALREGLPGFGMEGLLPGFFEDGL 308 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 L D+ P ++ +D+ + + + R E L L Sbjct: 309 STVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPLEHFLS 367 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDDLLS 437 E+ + G L ++ V T L + I+ + L+ Sbjct: 368 REDVNQRMQS--FRVLEGGGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGALSPLVE 425 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 + + + +V T A+ L L + V+ Sbjct: 426 RLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVKVHT 465 Score = 70.2 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 27/260 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S V D + T D V D ++ E +R Sbjct: 806 VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIEREVARGG 865 Query: 449 VLVTTLTKRMAEDL---TEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + E L L +V H + + +++ ++ VL+ Sbjct: 866 QVFFVHNR--VESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCT 923 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 +++ G+D+ + + + AD+ G + L Q GR R+ K Y + PS Sbjct: 924 SIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRS---KERAYAYLLVPSRRA 976 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + +RR E Q + E G + D+ G N+ K G Sbjct: 977 VTKDAQRRLEVLQNFTE----LGAGFSIASHDLEIRGAGNLLGDKQSG--------AIAE 1024 Query: 623 VPMDMSPKALQQKIHELEGL 642 + DM + L++ + E++G Sbjct: 1025 IGFDMYAQLLEEAVAEMQGQ 1044 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 93/511 (18%), Positives = 169/511 (33%), Gaps = 72/511 (14%) Query: 42 GSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAY 101 G+ ++ A + QRP ++L PN + E + F P+ Sbjct: 24 GAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPD------------LPAPLV 71 Query: 102 VPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLH 160 P + + RL+ + E R V + A +SA+ P +L + Sbjct: 72 FPDREILPYDRLAPPADATATRLATLATLPEWRGVCL-APLSAVLQRLPPRSFLDQHAFV 130 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 L VG + +RL + Y + + G RG +ID+FP+ S + R+ELFD Sbjct: 131 LAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGS-PLPYRIELFDRV 189 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 VE + FDP T + + + ++ P A++E + AR + ++ Sbjct: 190 VESIRAFDPETQRTLQKVEGVSLLPAREVPVD----TAALQEFRSRFRARFSGDPQRAEI 245 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE- 339 Q Q G E+Y L + P DG++ + Sbjct: 246 YRAASRGQAPQ-------------GAEHYLPLFFPECSH-----LLMHFPVDGVVFLPPG 287 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + I ++ + + P L P ++E+ + Y Sbjct: 288 LEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWED---------VLRGRARVY 338 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 ++ + + P P P+A+ L + RV++ + Sbjct: 339 GQQEGDAERLPTAPLPDLHGSPEA---PLAS-----LDTFLRHLPTTGRVILAAESPGRQ 390 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE---VS 516 E L+E L + G +H + G + + + L GL + E V Sbjct: 391 EALSERLGKSGLLPSRVHD----------WPEFLAGTERIAITVAPLERGLLIKENGLVR 440 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVN 547 L + +A G +R Q AR + Sbjct: 441 LALVSEAQIFG----DRVFAQRRSANARQRS 467 Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 73/200 (36%), Gaps = 15/200 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD--LLSEIRQRAAIN 446 T+ + P L +G + + P P VR DD ++ ++ Sbjct: 755 TLTATPIPRTLNLSLAGLRDLSIIATPPQRRQP---VRTFVQIWDDATVIEACQRELHRG 811 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V R E + L R H + E ++ D FD+L+ Sbjct: 812 GQVYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTT 871 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D P + + I ADK G + L Q GR R+ Y TP + +A Sbjct: 872 IIESGIDNPHANTILINRADKFGLAQ----LHQLRGRVGRSHQR---AYAYLFTPDL-RA 923 Query: 565 IGETERRREKQQKYNEEHGI 584 + + RRR + E+ G+ Sbjct: 924 MSDDARRRLDAIQSLEDLGV 943 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 137/390 (35%), Gaps = 40/390 (10%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V+ + + IA + P +++ + A Q+ +++ + P Sbjct: 25 VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDLQTLL----------AHCSGLPV 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 P +T S + +I RL+ + +VV V + P Y + Sbjct: 75 IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 VG + A +RL Y Q G F VRG ++D++P +D + LR+EL D Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLD 193 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 EE++ + FDP + + ++ + + P + + + ++E Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERFD---------- 243 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL--SGRGPGEPPPTLFDYLPADGLLV 336 L R + + SGIE Y SGRG TLFDYL AD L++ Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296 Query: 337 VDESHVTIPQIGGMYRGDRARKETL---VEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + + R E +E P L P E P+ S Sbjct: 297 --TAPGVSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWS 354 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 A + + +V+D+ P D + Sbjct: 355 AEHAHID----KAEVLDEQPLPVATKDVSV 380 Score = 71.8 bits (174), Expect = 7e-11, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 14/192 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L + + D + T L+ + + + LL E QR Sbjct: 800 HLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDNALLHEAFQRELARG 859 Query: 448 RVLVTT-----LTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 L RM DL + + E R+ H + E ++ D + F+VL+ Sbjct: 860 GQLYFLHNDVESIGRMQRDLAQLVPEA--RIGIAHGQMPERELERVMLDFQKQHFNVLLS 917 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + I AD+ G + L Q GR R+ + Y + P Sbjct: 918 TTIIESGIDIPNANTIIINRADRFGLAQ----LHQLRGRVGRSHHR---AYAYLVVPDRR 970 Query: 563 KAIGETERRREK 574 + E+R E Sbjct: 971 SMTADAEKRLEA 982 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 94/491 (19%), Positives = 179/491 (36%), Gaps = 55/491 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 R ++++A A +++ ++ + EN + + P +DT + S Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGENVMLF--------------PPTDTLPYEHMS 99 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 100 ADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL 159 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 160 AHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQR 218 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + I P P R +A++ I++ + L + + Sbjct: 219 SDKRVRQIQISPAHE--IPFWRRTEAIKRIEQ---LQIASLR--------REVQHEWATA 265 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPT-LFDYLPADGLLVVDESHVTIPQIGGMYR 352 E + G Y+ F R P E L+ +LPA ++++ E H Q + Sbjct: 266 REHLETGQRFEGRAFYAPFF--RTPHEAAEAGLWQHLPASAIILLSEEHELNAQGIELQS 323 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + T +E LP + + + ++ + +++ V + Sbjct: 324 HADLVRSTQIENN-ELPPDFPFPLIAWTFIRRSIQRWSCLNLSNQPIADDQNDSFVHE-- 380 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 ++ + Q D L ++R+R ERV L A L E +H Sbjct: 381 ------INTFSQAASYGGQTDRLFEDLRERLVGGERV---VLISPQASRLRELASQHNLA 431 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-- 530 + D + + G +++ L G + L + D++ G+ + Sbjct: 432 LIGEEDGPDVDD-----PPFQSG--TIIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQRR 484 Query: 531 --SERSLIQTI 539 S R+ Q Sbjct: 485 ALSTRARKQRT 495 Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 27/291 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--PIIEVRPVATQVDDLLSEIRQRAAIN 446 + ++ATP + + + D V T D PI ++ + +R+ Sbjct: 780 VLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLVRDAILRELGRNG 839 Query: 447 ERVLVTTLTKR---MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V + +A L + + E V H + ++I G FDV V Sbjct: 840 QAYFVHNRVQSIYTVANRLQKLVPEARIGVG--HGQMPEKALEKVILQFFEGLFDVFVCT 897 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMA 562 ++ G+D+P + + I DA G + L Q GR R+ G A ++ + Sbjct: 898 TIIESGIDVPSANTMIIDDATTYGLAQ----LYQLRGRVGRSTQRGYAYMFYNP-----T 948 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 KA+GE ++R + + E G G + D+ G + Sbjct: 949 KAMGEEAQKRLEAIQEATELG---AGFRIAMRDLEIRGTGNLLGAEQSGN-------ITT 998 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + D+ + L Q + + + Q E+ AQ + LR + ++ Sbjct: 999 IGFDLYSRLLSQAVERVREERKRGQQQKSGEQKAQRARAVEALRRAAVVSA 1049 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 182/527 (34%), Gaps = 70/527 (13%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L G+ G + +++ +++ N++ A L + Y Sbjct: 32 LTGLKGGSDSLFFSSLFNK-NESILIIKENESDAMLLSQSLNF---------------YN 75 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYL 155 P Y P DT S I Q R++ ++ + +++ +V+A+ D Sbjct: 76 IPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLK 135 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 K+ +HL VG +D + L +L Y + ++GT VRG ++D+F E + +R+E Sbjct: 136 KLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEY-NNPIRIE 194 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LFD+E+E + LF+ G+ ++ IYP + + + + Sbjct: 195 LFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFINN------------- 241 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + + Y +G EN + T+FDY G + Sbjct: 242 -----------NEIEDELKDNIIKRKYFAGSENLLPIFY-----KDLETIFDYFDY-GYI 284 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 D++ + + + ++ F + + + F + + I +S Sbjct: 285 FTDDALKLKNKFITIIDTIKENFND-IDNIFNIIEDIYKLYIDSNYFAEIVKKAINISPF 343 Query: 396 PGNYELEKSGG-DVVDQVVRPTGLLDPIIEVRPVATQV------DDLLSEIRQRAAINER 448 + ++ K + + R T LD + E R + +D + Sbjct: 344 ITDIDIYKFHFEEGISFKSRLTDFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDLSP 403 Query: 449 VLVTTLTKRMAEDL---TEYLEEHGERVRYLHSD-----------IDTVERMEIIRDLRL 494 ++T ED+ E + +D DT ++ EI +D Sbjct: 404 TIITENDIEDTEDIKDKEENSDNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDYSK 463 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + G ++ + I D + G R + I + + Sbjct: 464 NENNFYIITAQSSSGFIKDDIKTIFIADWEVFGRKRKKVRKIPKVNK 510 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 99/266 (37%), Gaps = 23/266 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQR 442 L + +SATP L + + D + T L+ I ++ D +++ I + Sbjct: 788 RLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERE 847 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVL 500 +V E +++ + R H + + +I+ D ++D+L Sbjct: 848 LKREGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDIL 907 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I +A+K G L Q GR R+ Y PS Sbjct: 908 VSTTIIENGIDIPNANTILIDNANKLGLS----ELYQLRGRVGRSDRE---AYAYMFYPS 960 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 A+ E +R + EH G + D+ G NI + G Sbjct: 961 DL-ALTEVAYKRLEAIS---EHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQ----- 1011 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQ 645 V ++ + L++ +E +G + + Sbjct: 1012 ---VGYELYTQMLEEAANEYKGEIKE 1034 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 145/395 (36%), Gaps = 46/395 (11%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + +L+ L G L ++ S + +A + + RP +++ + A + + Sbjct: 14 PELEKLKRELSCGS--DATLSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLA 71 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + +AV + + DY P SD A+ ++ I R A + V+V Sbjct: 72 AWLGNDAVLRYPNRKDY-------PWSD------ATPDDAIIGARCRAIAKLSAGEKVIV 118 Query: 139 VASVSAIYGLGDP---DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VAS A+ P +L VG + + L + YA + GTF + Sbjct: 119 VASAHALMRRVPPVGSGYFLPATFT--VGDDVPFEDVASLLVGMGYADTGEVDAPGTFHI 176 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 G+ +DIFPA++ +R+E F +E++R+ TGQ + I T+ P +E Sbjct: 177 HGDTVDIFPAQATS-PVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEA 235 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I +A E + DLE++ +E Y L G Sbjct: 236 IRRAEEALYTRAQEN-----------------SAIAADLELIQRGAQAPALERYLPVLYG 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR---KETLVEYGFRLPSAL 372 + +++ ++ L+V+ E + + + ++ + P A+ Sbjct: 279 G-----TASPLEHISSETLVVLAEPRSLFDDCQRAFDEISSSAAASKVKLDGLYTDPKAM 333 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 D + F +L V++ + +G D Sbjct: 334 DFGSQQRLSFSSLLRTGAAVTSELSVVQPSIAGSD 368 Score = 59.4 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 21/260 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP ++ + V D + T ++V D + + IR Sbjct: 758 VLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREG 817 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + ++ +EE R H + E ++ + E DVLV + Sbjct: 818 QVYYVSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTI 877 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D + + I D+ + G + L Q GR R G+ Y + P+ Sbjct: 878 IESGIDNSHTNTLIIEDSQRLGLAQ----LYQLKGRVGR---GRQQAYAYFMFPAELPLT 930 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E R ++ + G+ + D+ G G + +V Sbjct: 931 EEATERLTAINEFQD----LGSGMRIAMRDLEIRGAGSL------MGAEQHGNLS-SVGF 979 Query: 626 DMSPKALQQKIHELEGLMMQ 645 D+ + L + + E G + Sbjct: 980 DLFTQMLGEAVAEARGESAE 999 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 152/388 (39%), Gaps = 43/388 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGS-------GKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 +++++E L+ A +TLL G+ + + + LQ+ +V+ PN+ A L Sbjct: 1 MKKIDEILKQNPAFKTLLKGEGNIIVNDLNDEALLVTSAFLTLQKDIIVIKPNQYEANLL 60 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 Y ++ ++++ + P +++ + + + + R+ A + Sbjct: 61 YQQISLINEKDSL--------------FFPVDESYRIEALASSPELLGQRIDALYQLTTD 106 Query: 134 RDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +++ A+ L L+L L+L GM ID + + L + Y + Q Sbjct: 107 QPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRVDQPFY 166 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F RG VID+F + D+ LR+E FD+E++ + ++ + + + + TI P + + Sbjct: 167 FSKRGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPASDILYD 225 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + + +I + R + + E ++L +E L + D E + + Y Sbjct: 226 EQEVPAVLSKIND---LRDRQIEELDELYQEDYL-SKVSIDQENLRNHDTSFTMYGYFNL 281 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS-- 370 +L DYL L++ +H + + L G + Sbjct: 282 F------NQTASLLDYL-DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKGLN 334 Query: 371 -------ALDNRPLKFEEFEALAPQTIY 391 +D + + F+ F ++ Sbjct: 335 LFRDLYEVIDRKSVNFKPFAQSDKDVLF 362 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 28/269 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI--RQRAAIN 446 T+ + P ++ G + Q+ P P+ V L+ +I R+ A Sbjct: 755 TLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNV--LIKQIIERELARDG 812 Query: 447 ERVLVTTLTKRMAEDLTEY-LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + T ++A L G RV H +D E +++ EF+VLV + Sbjct: 813 QVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTI 872 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG--KAILYGDKITPSMAK 563 + G+D+P + + + DADK G + L Q GR R+ G +LY K Sbjct: 873 IETGIDIPNANTIIVEDADKFGLSQ----LYQIKGRVGRSNRGAYAYLLYNP------TK 922 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + E +R K K E G G + D+ G G ++ D++ Sbjct: 923 VLNEEASKRLKAIKEFTELG---SGYKIAMRDLAIRGSG------DILGGTQSGF-IDSI 972 Query: 624 PMDMSPKALQQKI-HELEGLMMQHAQNLE 651 +M K LQ I ++ ++ + ++ Sbjct: 973 GFEMYMKILQDAINEKMGKEDVEAEKEIK 1001 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 96/546 (17%), Positives = 182/546 (33%), Gaps = 57/546 (10%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF + F PE +R + ++ G + G+T S + A +P Sbjct: 1 MILPF-VRELFADVEKSPEFLRAATQ-VKSGTGRIRVSGLTPSARALHYALFSKATLKPL 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ P+ A +L ++ + ++ + +P+ D ++ S + I+ Sbjct: 59 IVVVPSNRAAEELLPIVQAYCE-------LTGTAHADAVVMLPAYDVLPYENLSPHPEIQ 111 Query: 121 QMRLSATKAMLERRDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R +A ++ V+A V+ + Y + + G ID + L Sbjct: 112 EARAAALWKIVSGTARFVIAPFVATAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTS 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ D G + +RG ++DI+P ES+ +R+ELF +EVE + FD T + Sbjct: 172 GYSTVDVVEMPGEYALRGGILDIYPPESEH-PVRIELFGDEVESIRKFDTETQRSAGATD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + I +L+ R R D E + Sbjct: 231 EVVLLPLSDTPVREDILGS----IHAKLSGR------------------RLDADEETLEA 268 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + LFD LP + ++ D+ + + E Sbjct: 269 IARAEGVTVF-PGWEYYAGATANQRLFDLLP-NAAVLRDDPVKIESDFEAWWERVQQSHE 326 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 P L + P + Q S + E + +Q+ + Sbjct: 327 RSGVGHLVRPEDLLDSPDTW--------QQRIASLPGADVEQLGMYSESGEQIAIQSQ-- 376 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 V ++ E++ RVL E L + E+ R Sbjct: 377 ----STSKFHGSVPAMVEEVKALLTDGRRVLFAAANTGEVERLADIFSEYMVPFRV--GS 430 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSL 535 T E + + + L +++ EG+ MPE V ++ F SE + Sbjct: 431 RSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLF--GTRDLFDESEVAS 488 Query: 536 IQTIGR 541 Q R Sbjct: 489 AQQPKR 494 Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 103/275 (37%), Gaps = 23/275 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP L S + D V T D + VA + L+ ++ Sbjct: 784 VLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGG 843 Query: 449 VLVTTLTKRMAE-DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + ++++ + E + + L H + + +I+ + D+LV + Sbjct: 844 QIYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTI 903 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + + AD+ G L Q GR R+ Y + P + + Sbjct: 904 IENGLDIPLCNTMIVNRADRHGLS----ELYQLRGRVGRSNRR---AYAYLLVPP-DREL 955 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E RRR K + G G +D+ G N+ + G + + V Sbjct: 956 TELARRRLAALKEFSDLG---AGFKIAALDLELRGAGNLLGGEQSG--------QIEAVG 1004 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 ++ L++ + E++G + + + IR Sbjct: 1005 FELYTTMLERTVREMKGEVQEEQAETQLNLGLNIR 1039 Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 19/184 (10%) Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR 414 A ++T + F + EF Q +A + +S + + Sbjct: 605 YAARKTAKGHAFSATGQFEREFDDAFEFNETEDQE---NAIRDVRQDMESDTPMDRLLCG 661 Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA----EDLTEYLEEHG 470 G + +R V D N++V V T +A E Sbjct: 662 DVGYGKTEVSMRAAFKAVSD-----------NKQVAVLAPTTVLAFQHFETFKRRFSAFP 710 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFL 529 +V + ++ EI+ + G+ D+L+G + +L + + P++ LV I + + G Sbjct: 711 VKVEMISRFRTAKQQKEIVERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVR 770 Query: 530 RSER 533 ER Sbjct: 771 HKER 774 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 22/276 (7%) Query: 12 KPSGDQPEAIRRLEEGLED---GLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 +P D + + L++ L + G+TG+ K+ +A R T ++ + Sbjct: 2 QPLFDAIQTDKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGE 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +QL ++ P P +P+ D + + + RL Sbjct: 62 SLSQLKSDLATLLP-------------AAPVLELPALDFVTFSVTAKSLELTAQRLDIYS 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L V+V+A+ AI P + + + L G I+ +L L Y R DQ Sbjct: 109 RLLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F RG +IDIFP LR+ELF +E++ L FDP T + + + + I P Sbjct: 169 DNVGQFSARGGIIDIFPLN-RPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMP-- 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + E + + A V E ++ E Sbjct: 226 --IIEPEHSGKRTTVLSYLPADGCVVFDEPARVREA 259 Score = 94.1 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 94/266 (35%), Gaps = 31/266 (11%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE---- 438 + +SATP L S D + T P E PV T V + E Sbjct: 695 WRTNIDVLTLSATPIPRTLHMSLVGARDMSIIET----PPEERYPVQTYVVEYHEEVVRD 750 Query: 439 -IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLG 495 IR+ +V + + + L E R H + ++ D G Sbjct: 751 AIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSEDRLERVMLDFYEG 810 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 +D+LV +++ GLD+P + + + DADK G + L Q GR R A Y Sbjct: 811 NYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQ----LYQMRGRVGRTHR-MAYAYF- 864 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKS 614 T K + E +R + K E G G + D+ G NI + G Sbjct: 865 --TYQRDKVLTEVAEKRLQAIKEFAELG---AGFKIAMRDLEIRGAGNILGPQQHG---- 915 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELE 640 +V +M + L + + EL Sbjct: 916 ----HILSVGFEMYCRLLDEAVQELR 937 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 104/563 (18%), Positives = 195/563 (34%), Gaps = 65/563 (11%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLAPNKTLAAQLYGE 76 EA+ + L G + +LG G + +A +A + P + +AP+ T A + + Sbjct: 7 EALPVVLTALRSG-RRKRVLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQTVAAD 65 Query: 77 MKEF--FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 + F E A Q VP D D S + R++A + + Sbjct: 66 VAFFAGSGEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALERLRAGE 125 Query: 135 DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 +++ S+ ++ P + + ++ + + L+ Y R D G F Sbjct: 126 PELIILSLRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVGDPGCF 185 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV-TP 252 +RG ++D++ + R+E + +E+ER+ +FDP + + + + ++P V T Sbjct: 186 AIRGGIMDVW-VPLERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRETVATG 244 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 A+ EL R +V + T+ + + GI+ + Sbjct: 245 SRTTANALRLAVLELGDRIEVP------------SSATRQVIANLGAGVDFFGIDALTPV 292 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + ++ DYLPA+ +DE + M VE + + Sbjct: 293 F-----HDGLASVADYLPANARWYLDEPEALVGLGERMADELDFEYRRAVEAKHLVAAPE 347 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------- 424 D + + E L + V A Y+ E++ GD + G P+ Sbjct: 348 DFFCTREQLREQLRGAAV-VGARLDLYDPEQTKGDRRGVIRVDLGRNAPLRAKLEAARGQ 406 Query: 425 -----VRPVATQVDDLLSE----IRQRAAINER-----VLVTTLTKRMAEDLTEYLEEHG 470 +RPV + +L + +ER VLV T AE LT L +G Sbjct: 407 KGGELLRPVVDHIRELGVHADATLGGALDPSERDPWDVVLVAPNTT-HAERLTAMLRGYG 465 Query: 471 ERVRYLHSDIDTVERMEIIR----------DLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 R ER +L+ V+ G L EG L+ + Sbjct: 466 LRPE----GTSKQEREHSSGAGGAIELGGLELQAPRLRVIAGT--LSEGFASEGDRLLVV 519 Query: 521 LDADKEGFLRSERSLIQTIGRAA 543 +++ G + + +A Sbjct: 520 SESEIFGPVARREGRRRRRRKAG 542 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 12/206 (5%) Query: 380 EEFEALAPQT--IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + F+ L + ++ATP L S + + + T +D + + D +L Sbjct: 812 DRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISMITTAPVDRLAVRTYLTRHSDVVLE 871 Query: 438 E-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRL 494 E IR+ A ++ E+ + E R + H + + + D Sbjct: 872 EGIRRELARGGQIFYVVPRVMGIEEHAVRIRELVPEARVIVAHGQMPPEMLEQTMVDFVR 931 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 E DVLV ++ GLD+P + + I AD+ G + L Q GR R+ K Y Sbjct: 932 HEADVLVSTTIIESGLDIPRANTMFIARADQFGLAQ----LYQLRGRIGRS---KLRAYC 984 Query: 555 DKITPSMAKAIGETERRREKQQKYNE 580 + S+ + + RR E Q+++E Sbjct: 985 YLMVASLERLSEDARRRLEAIQRHSE 1010 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 104/522 (19%), Positives = 184/522 (35%), Gaps = 51/522 (9%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLL--GVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 P Q R L + + + L G S + +A +IA++ P +++ A Sbjct: 8 PLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSA 67 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++ + E+ P++ P S+T + V+ + +R+ + Sbjct: 68 EEVTAGLAEYLPDDR------------DPTLWPVSETLPYELLPVDRSVSALRVELLARL 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V +VA A+ L P HL VG + A + L + Y Sbjct: 116 ARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQA 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 176 PGQVGRRGGIIDVFPPVGDH-ALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEV 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + R +V E + L+ Q T + Sbjct: 235 SLAQRDAALSALRQMDTTTLRPEVAEEWERSLQRLERGQVTVGLELL------------- 281 Query: 310 SRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 P +L DYL + LLVV E I + ++ L + G L Sbjct: 282 -----APLLLPEPASLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAG-EL 335 Query: 369 PSALDNRPLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 PS + L ++ + I P ++ + P E+ Sbjct: 336 PSGMPRPYLDWQAVADRLSGARQIAFGPVPTHWS--------PPVAIIPDARPVYGRELP 387 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 A ++D L++++R+R A V++ + + LTE LEEH R Sbjct: 388 AYAGRLDALVADVRERLADGWAVILASE---QSGRLTEVLEEHDIFPRTRKRPAGNGRIA 444 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G +V+ + L G + + ++ + D + G+ Sbjct: 445 PPPEPPTPGTVEVV--YSRLNGGWEHGGIKVLLLTDREMFGY 484 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 29/260 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L + + D V T + V D L+ E R Sbjct: 779 VLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPIRTFVTASNDSLIREAILREISRGG 838 Query: 449 VLVTTLTKRMA-----EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + + E L + + E V H +D E +++ EFDVLV Sbjct: 839 QVYFVHNRVQSIYHVLERLEKLVPEARFGVG--HGQMDEDELEQLMLAFMQHEFDVLVCT 896 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ G+D+P V+ + I A + G + L Q GR R+ + A + D P A Sbjct: 897 TIIESGVDIPNVNTIIIDRAHQLGLTQ----LYQLRGRVGRSHHRAYAYVLYDANVPLSA 952 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 +A+ E +E + G + D+ G N+ + G + Sbjct: 953 EAVARLEAIQEATE--------LGAGFQIALRDLEIRGAGNVLGPEQSGHVAA------- 997 Query: 622 NVPMDMSPKALQQKIHELEG 641 V +D+ + L + E++ Sbjct: 998 -VGLDLYTRMLATAVEEIKQ 1016 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 105/538 (19%), Positives = 183/538 (34%), Gaps = 37/538 (6%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR---PTMVLAPNKTLAAQLYGEMK 78 + L + A G+T + A + P +V+AP+++ A L ++ Sbjct: 8 EAIRAVLSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVA 67 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---- 134 F P + P ++P+ DT + S + R++ + Sbjct: 68 FFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLG 127 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV+++ + + + + L L D+ A RL Y R GTF Sbjct: 128 PVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFA 187 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP-- 252 VRG VID+F R+ELF + VE + LFDP + + + + + ++P V Sbjct: 188 VRGGVIDVFTPLY-RYPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEG 246 Query: 253 ---RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 R RI+ A + A R+VL + E + T + L + Sbjct: 247 AEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHTHLAPLASYLVAGDA 306 Query: 310 SR----FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + G+ D +D+ + P D R TL E+ Sbjct: 307 PPACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDGRLAFPPSDHYVSPDELRA-TLAEHA 365 Query: 366 FRLPS-------ALDNRPLKFEEFEALAPQ--TIYVSATPGNYELEKSGGDVVDQVVRPT 416 +RL + A + L + A AP+ + + + + E+ G ++ V Sbjct: 366 YRLEARGLEMYQAAADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDN 425 Query: 417 GLLDPIIE--VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 LL +E R A ++ L+ I + V T A L L ++ Sbjct: 426 RLLRASLERTRRQAADELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTA 485 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + ER + L G V+ L G + LV + + G R Sbjct: 486 HVI------EERSVDVDALSPGAPPVIYP-GELSAGFALRTDKLVMLTADEIFGPRRR 536 Score = 59.4 bits (142), Expect = 5e-07, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 95/285 (33%), Gaps = 52/285 (18%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSE-IRQRAAIN 446 + ++ATP L + + D + T D VR QVDD +L E IR+ Sbjct: 837 VLTLTATPIPRTLHLAMSGLRDLSIIATPPADR-RAVRTFVAQVDDGVLREGIRRELGRG 895 Query: 447 ERVLVTT----------------------LTKRMA-------EDLTEYLEEHGE--RVRY 475 +V T R ++ E+L RV Sbjct: 896 GQVFFVCPRIGADPAPSKGKVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAV 955 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + +++ D G ++LV ++ GLD+ + + + AD G + L Sbjct: 956 AHGQMSAEALEKVMIDFVSGNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQ----L 1011 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ +A Y P + + RRR + + E G Q + + Sbjct: 1012 YQLRGRIGRSKQ-RAFCYLLVPPP---EKLSSDARRRLETLQRFSELGAGFQIASHDLE- 1066 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + K G V + L++ + EL Sbjct: 1067 -IRGGGELLGAKQSG--------AIAAVGFEAYAAMLEEAVAELR 1102 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 165/461 (35%), Gaps = 58/461 (12%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTG-------SGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 + ++ L+D A +TL G S + + IA R +++ N+ A Sbjct: 3 VMEKILNLLKDNQALRTLDTDNGTIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFN 62 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 LY + E + Y P+ ++ + + + + R++A AM + Sbjct: 63 LYKTLTELVNQ---------------VVYFPADESLRVESVAYSYELLGERINALYAMTQ 107 Query: 133 RRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 + ++ V + ++ P DL+ K ++ L G ID + + L + Y + Sbjct: 108 DKPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPF 167 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 + RGEV+D++ + D +R+E FD+E+E +S +D + + + I I P T + Sbjct: 168 YYSRRGEVLDVYTIQYDH-PVRIEFFDDEIEEISFYDKDSQRRTNKIESIDILPATDMMY 226 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 + + Q ++ + + + + +E L Q D+E + Y I Y Sbjct: 227 EDDGLSQ----VEASIQTLKDKMTVKDDFKDE--LEQTYALDIESLKAHDYNPRIYQYLG 280 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 T+ DY D ++ + + L E G + Sbjct: 281 LFP------ETATIMDY-ARDYTIITASLASILASYKTYMEENYLYYHELEEIGQMI--- 330 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 R LK PQTI L++ D V ++ V Sbjct: 331 ---RGLKL----INNPQTI----------LKRQNVDFVRFRENDQQIMFMTQPVMISMAN 373 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 +S+++ N RV++ KR + L +H Sbjct: 374 EKIFISQLKDLLTYN-RVMIGVDEKRQIDVLVNLFTDHAIP 413 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 21/260 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR-AAINE 447 + ++ATP L+ S + T L+ + V+ + L+ ++ +R + N Sbjct: 752 VLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIKQVIERELSRNG 811 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ L+ R H +D E +++ D ++D+LV + Sbjct: 812 QVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVEKKYDILVCTTI 871 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P + + I +ADK G + L Q GR R+ I Y + + +A+ Sbjct: 872 IETGIDIPNANTIIIENADKFGLAQ----LYQIKGRVGRSAR---IAYAYLL-YTKDRAM 923 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E ++R K + G G + D+ G + D V Sbjct: 924 TEEAQKRLTAIKEFTQLG---SGYKIAMRDLSIRGSGDILGGEQAGF-------IDQVGF 973 Query: 626 DMSPKALQQKIHELEGLMMQ 645 DM K LQ I E +G + + Sbjct: 974 DMYMKILQDAIDEKQGKIKE 993 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/535 (16%), Positives = 181/535 (33%), Gaps = 49/535 (9%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + + L + + G+T + ++ I + + P ++L + A ++ Sbjct: 14 EHTASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPVVLLVADNKAADAMHL 73 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 ++ +P+ D ++ S + +++ R + + Sbjct: 74 ALRAGCELTGAIAAER-------VLKLPAHDVLPFENMSPHPEVQEQRATTLWKIATGDA 126 Query: 136 VVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 +V+A V +A L Y + L G ID +L LA + Y + D G + Sbjct: 127 AIVIAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASVGYEQVDVVEMPGQYT 186 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 RG ++D++ E+D +R+E F +E+E + FDP + + S + + P T Sbjct: 187 RRGGILDVYSPEADR-PVRMEFFGDEIETMRKFDPESQRSQSPLDEARLLPLTETPVT-- 243 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + + L+ R + EM+ E+ G+ + + Sbjct: 244 --ERLLAAVHARLSGARFETNDEG----------------EMVAEMVAAGGVSVFPGWEF 285 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 G TL D P +L V+E + Q+ + R + P + Sbjct: 286 FAGVAGANKTLLDLFPR-CVLFVEEPGMIKNQVERWWNKVEQRHDRSSIGTLIRPE---D 341 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 L+ E EA + + DV++ + + Sbjct: 342 IYLRPELLEAQRKSHPGLDID------QLGAVDVLEDDETLGEIAFSSRPTLRFHGSIPA 395 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER----VRYLHSDIDT--VERMEI 488 + +I+ R+L+ + E L L E+ R +H+ +T E + Sbjct: 396 FVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRLGSRVMHTGSETMYDEASHL 455 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 DLR +++ + G+ +P+ +LV D + A Sbjct: 456 GGDLRT---PIILRAPIAT-GVSLPDANLVVFGANDLNDEADVTARPAARKSKTA 506 Score = 66.0 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 91/257 (35%), Gaps = 21/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP L S + D V T D + VA + L+ + Sbjct: 790 VLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVELERGG 849 Query: 449 VLVTTLTKRMAE-DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + ++ ++E R H + E +++ E+DVLV ++ Sbjct: 850 QIYFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLVATSI 909 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I AD+ G L Q GR R+ Y + P + + Sbjct: 910 IENGLDIPLANTILINRADRHGLS----ELYQLRGRVGRSNRR---AYAYLMIPPEQE-L 961 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E RRR K + G G +D+ G + V Sbjct: 962 TEIARRRLAALKEFSDLG---AGFKIAALDLELRGAG-------NMLGGEQSGHIEAVGF 1011 Query: 626 DMSPKALQQKIHELEGL 642 ++ L++ +++++G Sbjct: 1012 ELYTTMLEEAVNKMKGQ 1028 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 161/456 (35%), Gaps = 67/456 (14%) Query: 48 TIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 + ++ P ++ + +AA+L EM F V + +P +T Sbjct: 21 FYCSELSAKNTPLVIFTKDSYVAARLQQEMLWFNQNLVV-------------SMIPDWET 67 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S + + RL + + ++ D++++ + SA+ L + + G Sbjct: 68 LPYDSVSPHPDLISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQK 127 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +D ++ L E Y + F G F VRG +ID+FP S I R++ FD E+E + Sbjct: 128 VDLESLKMVLIENGYINVQKVFHPGEFAVRGGLIDLFPMGS-TIPYRIDFFDTEIESIKT 186 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T + + + I P I + +E + + Sbjct: 187 FDVETQKSIYPTNKIEILPARECPLTELSIETFRKNYRERFSGDPSK----------SPI 236 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 + +G+E Y + T+FDYLP D L +D Sbjct: 237 YTNISNKIP-------FAGMEWYLPLFY-----QETNTIFDYLPDDTL--IDVPFKLSSS 282 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALD-NRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 I + + R + A D RP+ L P+ I + + + +L + Sbjct: 283 IDHYWLDAQTRFKMY---------AYDIERPI-------LNPEEIMMDSVKFHQDLNRFK 326 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 D + P L I+ + + D +++ ++++++ + E + + Sbjct: 327 NLNFDVIDNP--LPKITIDYKDGYKNIADYINQC------PKKIIISAESLGRRETIHKM 378 Query: 466 LEEHGE---RVRYLHSDIDTVERMEIIRDLRLGEFD 498 L E R ++ ++ + I L+ G D Sbjct: 379 LTECDLSLKRSESINILDPVIDHLLIQSPLKEGFSD 414 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 48/253 (18%), Positives = 96/253 (37%), Gaps = 38/253 (15%) Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE--ALAPQTI 390 GL++VDE H + M + + + L +P L +F + PQ Sbjct: 701 GLIIVDEEHRFGVRQKEMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKR 760 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 T S G + + + R Q L +++ AI+E+ Sbjct: 761 LSIKTMVK---SFSEGIIKEALTREFNR----------GGQAYFLHNDVSSIYAISEK-- 805 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 LT+ + + +V H + E +++D F++L+ ++ G+ Sbjct: 806 -----------LTKIMPDA--KVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGI 852 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 D+P + + I +AD+ G + L Q GR R+ + +A Y +++ + Sbjct: 853 DIPTSNTIIINNADRFGLSQ----LHQLRGRVGRSHH-QAFAYLLI---DENRSLTSKAK 904 Query: 571 RREKQQKYNEEHG 583 +R + +Y E+ G Sbjct: 905 KRLEAIQYLEDLG 917 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 79/459 (17%), Positives = 165/459 (35%), Gaps = 62/459 (13%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGS-GKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 I + + LE ++ + ++ + + +A RP +VL N LA Q Y + Sbjct: 10 QITKENKALEQIQKKKSPIAISSTIQEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLT 69 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 F E F + ++ + + + + ++ ++ + + +V Sbjct: 70 SFLSEKECSLFGTD-------------ESLRVEAIASSPELSAQQVDTLFSLQKHPNQIV 116 Query: 139 VASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V SA L P + + +HL + + + +L Y + Q +F +RG Sbjct: 117 VTCPSAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLLASGYHQQAHVDQPLSFAIRG 176 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++D++ D +R+E FD ++E + FD + + TI I P + +I Sbjct: 177 GIVDVYSINYDH-PIRLEFFDTQIESIRFFDENIQRTIGTIEEVEIVPASIVFFSFNQIG 235 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 + I+++L V L++ +L+ + + FD M + + Sbjct: 236 DIRKGIQQDLERNPNVFLQD-ELMTTIQAMEAHLFDKSMYPYYAFVPNM----------- 283 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 L+DY+ L + DE + I + + + + + LP R Sbjct: 284 -----AGLWDYMEDAELFISDEI-LVNDAIKRLKEDTISYIQEMAQENKLLP-----RFD 332 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + + E P + + +++V P LL+ I++ Sbjct: 333 LWHDLERSMPASRCYYGDSYGDPVSH-----IEEVYLPNELLEKRIQI------------ 375 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 A +RV V L K+ + + E L+ R+L Sbjct: 376 ------AQKQRVTVFVLNKKEIQRIREILDHEKIEYRFL 408 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 18/219 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L+ S V T L+ ++ V ++ I++ + Sbjct: 745 VLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSVQTYVVEKNQALIVDAIQKELSRKG 804 Query: 448 RVLVTTLTKR----MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V A L + L + R+ +H + E +I+ E D+LV Sbjct: 805 QVFYLYNNIEFIYNRARTLQKELPDA--RIGVVHGKLGRDEIEDIMWRFNHQEIDILVTT 862 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P V+ + I DA G + + Q GR R+ + Y + P+ K Sbjct: 863 TIIENGIDIPNVNTILIEDAQNFGLSQ----IYQMKGRVGRSNR---LAYAYLLIPN-RK 914 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + E ++R + K + G G + D+ G Sbjct: 915 QLSEVAQKRLQAVKEFAKLG---SGYKVAMRDLTIRGAG 950 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 159/511 (31%), Gaps = 64/511 (12%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 G T+ V G + F ++ + P +V+ A L E++E +AV F Sbjct: 18 AGRPDLTVTAVDG-ARPFLLSALAGQA--PVLVVTATGREADDLTSELRETLGADAVTQF 74 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-------VVVASV 142 PS +T + S RL + + D VVA+V Sbjct: 75 -------------PSWETLPHERLSPGADTVGRRLQVLRRLAWPDDAQYGAPLRAVVATV 121 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 ++ P L + L G D ++ L EL Y R D +RG F VRG ++DI Sbjct: 122 RSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAVRGGILDI 181 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPRERIVQAM 260 FP +D + +RVE + +E+ L F + + +YP + + +A Sbjct: 182 FPTTTD-LPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVYPCRELLLTADVRDRA- 239 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 L E LE + + G+E L Sbjct: 240 -----------------ATLKAEHESDAALAEMLEKLAQGIPVEGMEALIPALVPGELQL 282 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYR---GDRARKETLVEYGFRLPSALDNRPL 377 L D LP V+ + + + R T G P L Sbjct: 283 ----LTDVLPDGTHTVLLDPEKIRTRAADLARTGQEFLEASWTAAALGSSAPLDPSGIDL 338 Query: 378 KFEEFEALAPQTIYVSATPGN-YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + L VSA + + T + R + + L Sbjct: 339 GASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTVHAEHAPAPRGSEAEAEKLF 398 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + +R AA ++ + + E L + L + R G Sbjct: 399 ATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASELEAGEGP----------RPGT 448 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEG 527 VL G L+ GL +P LV + + D G Sbjct: 449 VGVLRGS--LQTGLTVPSQQLVLLAEPDLTG 477 Score = 49.8 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 9/122 (7%) Query: 461 DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 ++ + + + R + H + ++ EFDVLV ++ GLD+ + + Sbjct: 567 EMAKQIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTL 626 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + A+ G + L Q GR R+ Y + PS R + Sbjct: 627 IVERAENLGLSQ----LHQLRGRVGRSRERG---YAYFLYPSEKPLTETAYDRLSTIAQN 679 Query: 579 NE 580 NE Sbjct: 680 NE 681 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 99/530 (18%), Positives = 184/530 (34%), Gaps = 58/530 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 I R+ L+ G L ++ S + F +A RP +++ + A + Sbjct: 12 TSREIHRIWNELDQGK--DCTLNISQSARPFIVAACACAQARPILLVVSGEDAADRAARI 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + + V + D +P SD S + + R A + + + Sbjct: 70 LAGWLGPDVVFRYPDRAD-------LPWSD------KSASAEVCGTRAEALFHLAQPQRC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQY---ARNDQAFQRG 191 VVVAS A+ P + + +G +D A+ R+L Y + + G Sbjct: 117 VVVASARALLRRLPPKTSSFAQQQKIC-IGDELDIYALARQLVLWGYVSTTVVKEVREPG 175 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F V G+ +D+F + +R+ F +EV+ + P TGQ +S+ + Y Sbjct: 176 YFCVHGDSVDVFSP-CEQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELEL 234 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 E I A NKL ++ + T+ L+ + E Y + ++ Y Sbjct: 235 SPETIQCA-----------------KNKLYDKAQEDLDTERVLDQIEESVYTNELDAYLP 277 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR-ARKETLVEYGFRLPS 370 +L ++ DY+ L+V+ E Y A E V Sbjct: 278 YLYP-----STASVIDYMHPSALVVLAEPRALFDDCQRAYDELMHASTEKRV-------- 324 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 +LD E + Q + +S+ + S V +Q I +R + Sbjct: 325 SLDGLYTSPVELDFGKQQRLSLSSLARQ-GMRASNHVVTEQCDIAGSASKMIGRIRELLA 383 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVERMEII 489 ++ + R A L T ED +E+ EH + H S+ + + + Sbjct: 384 NNSAVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRAPEHESEHNQDLEAQNL 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 R V+ + + G+ +P L +D L +++ Q I Sbjct: 444 PLPRN---KVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQKI 490 Score = 66.7 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 22/221 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD----DLLSE-IRQRA 443 + +SATP ++ + V D + +L +PV V DL+S+ IR Sbjct: 773 VLTLSATPIPRTMQMAMSGVRDMSL----ILSAPAGRKPVRVHVGEWDSDLISDAIRLEL 828 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 A +V + + +D E + R H + + E++ E DVLV Sbjct: 829 ARKGQVYYVSNRVKTIDDALERVHACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLV 888 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D P + + I D+ + G + L Q GR R G+ Y + P Sbjct: 889 ATTIIESGIDNPHTNTLIIEDSQRLGLAQ----LYQLKGRVGR---GRVQAYAYFMFPPT 941 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 E RR E ++ E G+ + D+ G Sbjct: 942 EPLTEEARRRLEAIYEHQE----LGSGMRIAMKDLEIRGAG 978 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 94/528 (17%), Positives = 178/528 (33%), Gaps = 71/528 (13%) Query: 26 EGLEDGLAHQTLLGVTGSGKTFTIANVIADL------QRPTMVLAPNKTLAAQLYGEMKE 79 + L G GV F IA + L Q+ + +A + A+L +++ Sbjct: 20 DRLAGGDGAIRASGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLEF 79 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD---- 135 F P V F P+ D S + IE R++ + + Sbjct: 80 FAPGADVLSF-------------PAWDCVPYDRVSPDSDIEARRIATLARLAHAKGGKPA 126 Query: 136 VVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V+ +V+A P K L G + ++ RL + R + G + Sbjct: 127 IIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPGEYA 186 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 VRG ++D++ R++ F + +E + FDP+T + +T T+ P + + Sbjct: 187 VRGGILDLY-VPGHARPARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLPISEIPSGD- 244 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 A++ ++ ++ L E R G+E++ Sbjct: 245 ---AAVKMFRQRYVELFGPGKGDDALYEAVSAGTRY-------------PGVEHWLPLFY 288 Query: 315 GRGPGEPPPTLFDYLPADGLLV----VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + +LFDYLP + + D + + I Y AR+E L + F P Sbjct: 289 -----DGMDSLFDYLPNAVVTLDHLADDAAARRLETIADHY---EARREGLEQRSFGAPP 340 Query: 371 ALDNRP----LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 +P L EE++A + P + + V G + Sbjct: 341 YKPLKPEALYLAAEEWDAKLGERKVRRFEP--FPQPDAKAVVQIDFKGKQGRSFALERSE 398 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + IR ++ +R ++ T E L L H R+ + + + + Sbjct: 399 SSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVANIAEVRKAD 458 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 + L+G + G + P+ L I + D G R Sbjct: 459 KSAVSFA------LLG---IESGYETPD--LAIIAEQDILGDRLIRRR 495 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 13/187 (6%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD--DLLSEIRQRAAI 445 + ++ATP L+ + V + V T +D + VR T D L + + Sbjct: 782 HVLTLTATPIPRTLQLALTGVREMSVIATPPVDRL-AVRTFITPFDPVTLREALLRERYR 840 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +++ +L E +R++ H + + +I+ EFDVL+ Sbjct: 841 GGQSFYVVPRISDLDEVATFLREQVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLST 900 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG----DKITP 559 ++ GLD+P + + + AD G + L Q GR R+ ++ KITP Sbjct: 901 TIVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKTRAYAMFTIPPNGKITP 956 Query: 560 SMAKAIG 566 K + Sbjct: 957 QAEKRLK 963 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 109/537 (20%), Positives = 180/537 (33%), Gaps = 68/537 (12%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-----------TMVLAPNKT 68 A+ R E L G + TL V +A++ L + + +A + T Sbjct: 28 ALTRAVEALRRGDSP-TLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVHVARDGT 86 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 +A G + PE V +P+ D S N I R++A Sbjct: 87 RSAAFAGALAFVAPEIEVLS-------------IPAWDCQPYDRVSPNPAIAAERMTALS 133 Query: 129 AML-----ERRDVVVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYA 182 + E R VVV +V+A+ + VG +D I+ L + Sbjct: 134 RLARTRSSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWLEANGFL 193 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R G + VRG +ID+ P +R++ F + +E + FDP T + + + Sbjct: 194 RTGTVRDTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLD 252 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + P + E I + + A R E ++E Sbjct: 253 LVPMSEVQLTTETIRRFRQGYVAAFGA-----------------ATRDDRLYEAVSEGRR 295 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV-DESHVTIPQIGGMYRGDRARKETL 361 +G+E++ R TLFDYL L+ D ++G + AR E L Sbjct: 296 AAGLEHWMPLFYDRL-----DTLFDYLAGVPLVFDKDVDDAAGERLGQVQEYHDARCEAL 350 Query: 362 VEYGFRL----PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG 417 + P D L E+ TP E G +VD P Sbjct: 351 KAPQPGVAPYKPLGSDALYLSPAEWAKRVEGARVARLTPFAVP-ESPGRPIVDCEAEPAR 409 Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 P V D + +R V++ ++ + L L +HG Sbjct: 410 NFAPERAQEGVNV-FDAAVQHVRALQGSGHHVILAAWSEGSRDRLCGVLTDHGLP----- 463 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERS 534 TV R+ L+ G+ DV V + L G + +++VA D + +R +R Sbjct: 464 -KPKTVTRLSDTLALKRGQ-DVAVAVWGLEAGFTIERLAVVAEGDILGDRLVRPKRK 518 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 12/190 (6%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL--SEIRQRAAI 445 + +SATP L+ + V + + T +D + VR T D LL + + Sbjct: 803 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRL-AVRTFVTPFDPLLVREALLRERYR 861 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +++ +L+ +V H + + +++ G+FD+L+ Sbjct: 862 GGQAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLST 921 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + + AD G + L Q GR R+ KA Y TP Sbjct: 922 TIVESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRS---KARAYALFTTPEGKA 974 Query: 564 AIGETERRRE 573 + ERR + Sbjct: 975 LTVQAERRLK 984 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 34/283 (12%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVI-ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 + G++GS K+F ++ A L +P +++ +K ++ F P V Sbjct: 23 QRKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFMPNAPVLS 82 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 F P++D + + ++ ++ A + + VV+A+ + Sbjct: 83 F-------------PTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVIANAEEVTQY 129 Query: 149 G-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 P LH + I++ L +L + Y R DQ QRG F VRG+++DI+P S Sbjct: 130 VVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDILDIYPVNS 189 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP------------------KTHY 249 D +R+E F +E++ L F + + I +T+ P T Sbjct: 190 DH-PIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVTPFFLGKSDADSTLLSYVKEGTLI 248 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 RI +A+++ +E RK + N+L + F Sbjct: 249 YDEPGRIQEALKKFLKEDPTHRKNHCDWNELQRTVDARNQVAF 291 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 120/301 (39%), Gaps = 33/301 (10%) Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLL 436 K++E+ + + +SATP L S V + V T + + ++ V ++ + Sbjct: 689 KWKEWASNID-VLTLSATPIPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLIA 747 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRL 494 I++ A +V + E LE +RY H + + EI+ D Sbjct: 748 DAIKRELARGGQVYFVYNRVASINHMGELLESALPGLRYAVAHGQMTGRQIEEIMTDFYE 807 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G +DVL+ +++ GLD+P + + I DAD+ G + L Q GR R+ + Sbjct: 808 GHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMRGRVGRSRRRAYAYFM 863 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGK 613 + +++A EK+ K EE G + D+ G N+ ++ G Sbjct: 864 YRPDKILSEAA-------EKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGSQQHGN-- 914 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH------AQNLE---FEEAAQIRDQLHQ 664 +V M L++ I + + ++ A +LE F + A I+D + Sbjct: 915 ------IASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAIDLEVDAFIDDAYIKDSARK 968 Query: 665 L 665 + Sbjct: 969 I 969 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/441 (16%), Positives = 150/441 (34%), Gaps = 48/441 (10%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 + GS + A+ Q +V+A + Y +K + + + F ++ Sbjct: 23 SLYGSADALALIE-FANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDNW------ 75 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKM 157 + S + I RL + + +V+ ++ +++ P + K Sbjct: 76 -------EVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSHLCPLEFSKKY 128 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L++ + I+ +L ++ Y + G F +R +ID++P + A R+ LF Sbjct: 129 SLNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT-KTAYRINLF 187 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +++VE + F+ T + + IP T+ P + T I K Sbjct: 188 NQKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYK------------- 234 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 ++ F ++E GIE Y TLFDYL + ++ Sbjct: 235 -------KIFNDNGFIYTEVSEGRLPGGIEFYLPLF-----FHTTNTLFDYLADNT--II 280 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 S + Y R R E + R P + L E + + + + Sbjct: 281 ATSKEFSNLVDKTYNEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTS 340 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 E +K + + P + ++ ++ + + N+++L+ + Sbjct: 341 KLENKKQHFNFNSSLPPPVRI---ELQTNNPLSKFSTFVKRFTNK--QNKKILIVCESLD 395 Query: 458 MAEDLTEYLEEHGERVRYLHS 478 L++ L H + S Sbjct: 396 RQNVLSDLLINHNLNTYSVKS 416 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 8/165 (4%) Query: 392 VSATPGNYELEKSGGDVVD-QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 ++ATP L + G + + ++ I+ D++ I + +V Sbjct: 756 MTATPIPRTLNMALGSLRELSIIATPPAKRSTIQTFVQEWHNDNIKEAITREIHRGGQVF 815 Query: 451 VTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + +++ E L++ ++R H I T E +I+ D F +LV ++ Sbjct: 816 ILHNDINSIDNMAENLKQIIPKLQIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIET 875 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+D+P + + I +A G + L Q GR R+ + +A Y Sbjct: 876 GIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHH-RAYAY 915 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 103/549 (18%), Positives = 181/549 (32%), Gaps = 75/549 (13%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP----- 59 L +A + +R E + +G + +A V L Sbjct: 75 NGLRAALREDPSIAR-VRAHAEREHAKRSEDLQIGAPNGLRAPLLAEVAEGLAAAQANGD 133 Query: 60 ----TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 + + + L ++ + PE+AV F PS +T + S Sbjct: 134 HAGVVLAVTATSRESEDLVAALRAYLPEDAVADF-------------PSWETLPHELLSP 180 Query: 116 NEHIEQMRLSATKAM------LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ 169 RLS + + +VVA V A+ L + L++G Sbjct: 181 RSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIVQGLADLEPVELSIGQRAPF 240 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++RRLA+ YAR D RG F VRG +ID+FP +D +R+E F +E+E + F Sbjct: 241 DQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWFAV 299 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + +++I +PK + P ++ I E+ ++ L ++ Sbjct: 300 ADQRTLTSISGTIEHPKALFAPPCRELL-----ITPEVQSKAAKLKDSFPAAAA------ 348 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 LE + G+E+ + L + + P + VV E + Sbjct: 349 ---MLEKIAGGIAVEGMESLTPVLV-----DSMVPVVAEFPPGSIAVVLEPERVRGRAHD 400 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKF------EEFEALAPQTIYVSATPGNYELEK 403 + A E +E + S PL F +LA ++ Sbjct: 401 L----EATNEEFLEAAWSTASDGGAAPLDVSQTLASASFASLAQTRGAALRAGVSWWSVS 456 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLTKRM 458 + G + L P E R V ++L I R N+ RV+V T Sbjct: 457 ALGIDDETAPELDVLSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGP 516 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 A+ L E + + S + + I V + G + + + Sbjct: 517 AQRLAELFHDADIPTARVDSLDEQPQLGIIE-----------VTTAAVGHGFVLDGLKIG 565 Query: 519 AILDADKEG 527 + +AD G Sbjct: 566 LLTEADLLG 574 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 27/271 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP LE S + + P + V P + IR+ Sbjct: 880 VLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAA--IRRELMR 937 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V E + ++++ R H + +II D FDVLV Sbjct: 938 EGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVCT 997 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+ + + + ADK G + + + G+ Y + P+ Sbjct: 998 TIIETGLDISNANTLIVDGADKYGLSQLHQLRGR-------VGRGRERAYAYFLYPAEKP 1050 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 R + +NE G+ + D+ G N+ + G Sbjct: 1051 LGEVALERLKAVAAHNE----LGAGMQLALKDLEIRGAGNLLGGEQSG--------HIAG 1098 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 V D+ + + + + + G A +++ E Sbjct: 1099 VGFDLYIRLVGEAVADYRGETEDKAADMKIE 1129 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 137/382 (35%), Gaps = 48/382 (12%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 EA++ +E GL+ G L V+ SG+T A A RPT+ + + A + Sbjct: 12 TAEALQAVEAGLDAG--EDVTLAVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARS 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + V F DY ++ + ++ + R A ++ + Sbjct: 70 LAAYVGLAHVCRFPERKDY-------------PWREQAPDDAVVAQRCEALGRIVRGDNC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++VAS A+ P Y + VG I + +RL + Y A G FR Sbjct: 117 IMVASARALLRCVPPVESRYWEST-TFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFR 175 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 V G+ +++FPA+ + +R+E F +E++R+ TGQ + I+P E Sbjct: 176 VHGDTVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIFPCRELALTDE 234 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + L + + LEM++ ++ + + Sbjct: 235 AVHNM-----------------HVALYRASQDDSKLAALLEMVDARIVTPELDRFLPVMY 277 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 G + ++ L+V+ E Y AR G LD Sbjct: 278 G-----QTVSPLAHVSGKALVVLSEPRSLFDDCLRAYEDIEAR------AGEAGIDRLDG 326 Query: 375 RPLKFEEFEALAPQTI-YVSAT 395 ++ ++ + A Q + YVS Sbjct: 327 LYVRAQQLDFGAQQRLNYVSLI 348 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 25/258 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP ++ + V D + PTG + V D + + IR Sbjct: 806 VLTLSATPIPRTMQMATSGVRDMSLITTPPTGR--RPVIVHVGEYDPDVVSAAIRLEVGR 863 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V + + +D + E R H + E +++ + + DVL+ Sbjct: 864 GGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMSPREVEDVMIEFATKKIDVLIAT 923 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D + + I D+ + G + L Q GR R+ Y + P Sbjct: 924 TIVESGIDNATANTLIIEDSQRLGLAQ----LYQLKGRVGRSATQ---AYAYFMFPGELP 976 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 E R ++ + G+ + D+ G G + +V Sbjct: 977 LTEEATARLTALSEFQD----LGSGMRIAMRDLEIRGAGSL------MGAEQHGNLS-SV 1025 Query: 624 PMDMSPKALQQKIHELEG 641 D+ + L Q + E G Sbjct: 1026 GFDLFTQMLGQAVAEARG 1043 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 117/633 (18%), Positives = 202/633 (31%), Gaps = 75/633 (11%) Query: 29 EDGLAHQTLL--GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 E + Q LL G + + + P +V+ P A + ++ Sbjct: 21 ERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTALLELMG----- 75 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV---VVASVS 143 + P+S+ + I +L +L D + +VA+ Sbjct: 76 ---------WSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDALSWAIVATER 126 Query: 144 AIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 + L PD+ L G +D A+ LA+L Y R + Q G++ RG+++DI Sbjct: 127 CLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDI 186 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S+ + +R+E F EE+++L FDP + + + + + P +++ + M + Sbjct: 187 FPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPLIADQLRETMPD 245 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 E L E + G G+ R L G G P Sbjct: 246 GLEPLLGAEG---------------------TEQLLNGGTPEGM----RRLMGLAWG-QP 279 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR--PLKFE 380 +L DYLP +V+DE + + D + Sbjct: 280 ASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEAGLDEGDRDRLWPAVLHR 339 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 E EA T LE VDQ L + P Q L I+ Sbjct: 340 EIEAAYALTEVFHGFDMAELLE------VDQHPNSFDLASRPVAAYP--NQFGKLGELIK 391 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 V + + A L LEEH R++ + D+ +I V Sbjct: 392 GFQTERTAVWLVSAQPSRAVAL---LEEHDCISRFVPNAGDSNAISRLIEQNTPVALKVR 448 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRAARNVNGKAILYGDKITP 559 G L EGL +P + + D + G S ++ +AA + P Sbjct: 449 -GTAEL-EGLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAA----------SRTVDP 496 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKK--VVDILALGQNIAKTKAKGRGKSRPI 617 + + R ++ + G + VV +A + G+ R Sbjct: 497 NKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGILRVAADQLGSLGRYRAT 556 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 E M A + + + + A +L Sbjct: 557 SETPPQLNRMGGTAWNKAKERAKKAVRKVALDL 589 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 101/262 (38%), Gaps = 31/262 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-----IRQRA 443 + +SATP L S V + + T P RP+ T + L E IRQ Sbjct: 772 VLTLSATPIPRTLYMSLSGVREMSLITT----PPPLRRPIKTHLASLDPEAMRSAIRQEL 827 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 +V E++ L E ++ L H + E + GE DV++ Sbjct: 828 DRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQMAEGELENAMVAFNAGEADVML 887 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPS 560 ++ GLD+P V+ + I DA + G + L Q GR R+ + A L+ Sbjct: 888 CTTIVESGLDIPRVNTILIEDAHRFGLAQ----LYQLRGRVGRSGIQAHAWLFYPG---- 939 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 ++ +T R+R + + + G G + D+ G G + + Sbjct: 940 -NASLSDTARQRLRAIQEFAQLG---SGYQLAMRDMEIRGVG------NLLGVQQSG-QM 988 Query: 621 DNVPMDMSPKALQQKIHELEGL 642 + + D+ + LQ+ + E++G Sbjct: 989 ETIGFDLYMEMLQESLAEIQGQ 1010 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 105/523 (20%), Positives = 170/523 (32%), Gaps = 62/523 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 ++L + TL+ S + + + P +V+ A L E++ Sbjct: 26 FQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATGREADDLAAELRGV 82 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD----- 135 F + A +PS +T + S RL A + + D Sbjct: 83 FGDAV--------------ALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGP 128 Query: 136 --VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 VVV SV ++ P L + L LTVG ++ RL EL Y R D +RG F Sbjct: 129 PLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEF 188 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 VRG ++DIF A + + +RVE + +E+ + +F + + P I+ + Sbjct: 189 AVRGGILDIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSI---PEIDIHTLVAFAC-- 242 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 E + E R L E +T L + E G+E L Sbjct: 243 ------RELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + L D LP ++V + + + R R +E + + + Sbjct: 297 ----WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGRE----FLEASWSVAALGT 348 Query: 374 NRPLKFEEFEALAPQTIYVS--ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + E L + LD Q Sbjct: 349 AENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQ 408 Query: 432 --VDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +D++ + +R A LV T A + E L E L D Sbjct: 409 RDIDEIFAMLRAHIATGGYAALVAPGT-GTAHRVVERLSESDTPAGML--DPGQAP---- 461 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + G VL G LR+G+ +P +LV I + D G S Sbjct: 462 ----KPGVVGVLQG--PLRDGVIIPGANLVVITETDLTGSRVS 498 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 16/218 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINE 447 + +SATP LE S + + T + + V D + + +R+ + Sbjct: 799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDG 858 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + E R + H + ++ E D+LV + Sbjct: 859 QAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTI 918 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 + GLD+ + + + AD G + L Q GR R+ G A P Sbjct: 919 VETGLDISNANTLIVERADTFGLSQ----LHQLRGRVGRSRERGYAYFLYPPQVP----- 969 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + ET R N E G G+ + D+ G Sbjct: 970 LTETAYDRLATIAQNNELG---AGMAVALKDLEIRGAG 1004 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 88/487 (18%), Positives = 167/487 (34%), Gaps = 72/487 (14%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + VT + +++ L R +V++ N T A L+ E F + + Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDL---------- 108 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 Y+P + + +++ R+ A +L ++ SV+ P Sbjct: 109 ---VYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++ Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF EE+E + FDP T + + + R + P Y+ E+ K+E K Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSDEQ--------KKEYQNILKYYS 276 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + E + E GY E + + Y +L Sbjct: 277 SSLHIPE--------------IPEAGYGIYYEELVPLVR------ENHGILSYFSEPPIL 316 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + +I + R + E + P D EEF L+ Sbjct: 317 LFPSPNSVNQRILHLEREYLSLFEKRSQEVLCAPP--DKLLSFGEEFRVLSELVGLSFVG 374 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 G D+V + I EVR + +SE+R A ++++T+ Sbjct: 375 LPPRN----GSDLVSCLKEAPAFKGKIREVR-------EKISELR--AEGGWKIVLTSSF 421 Query: 456 KRMAEDLT--------EYLEEHGERVRYLHSDIDTVERMEIIRDLRLG------EFDVLV 501 + + L L E H + ++ +LR G + +L Sbjct: 422 EAQTKRLQGLFEKEGIVLLNEGATEPIPFHLGKHKSDAFLVLSELRNGFIFENQKILILS 481 Query: 502 GINLLRE 508 ++ Sbjct: 482 ENDIFGR 488 Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 101/272 (37%), Gaps = 22/272 (8%) Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 N + F+ L + ++ATP L + + + + T + V + + Sbjct: 769 NHKEAIKRFKNLVD-VLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYVLEEDE 827 Query: 434 DLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIR 490 DL++E IR + +V E T+YL E V LH + E E + Sbjct: 828 DLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDEIEETLL 887 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 D ++D+LV ++ G+DMP V+ + + AD G + L Q GR R+ Sbjct: 888 DFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRSDRK-- 941 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + + P + E+R +Y E G + D+ G K + Sbjct: 942 -AFAYLLLPKDRVVTEQAEKRLNTIYEYQE----LGSGFKVAMRDLEIRGAGNLLGKEQS 996 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + V D+ + L++ I ++G Sbjct: 997 G-------DIMEVGFDLYVRMLEEAIARIKGE 1021 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 107/512 (20%), Positives = 179/512 (34%), Gaps = 79/512 (15%) Query: 38 LGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQ 97 LGV S + F +A A +PT+V+ + A + + + V F DY Sbjct: 31 LGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPERSDY-- 88 Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD----- 152 P PS + + R+ A A+ R+VVVVAS A+ P Sbjct: 89 PFVPKPSDPAQVAR-----------RMEAVHALASGREVVVVASARALVRALPPAGSDVH 137 Query: 153 --------LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFP 204 L M + + L E Y + GTF VRG ID+FP Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197 Query: 205 AESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIK 264 +R++ F +E+E + P TGQ + +P +IYP + + + +A ++++ Sbjct: 198 GNLV-YPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARARQKLE 256 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 A + LE ++ G + +L T Sbjct: 257 RPAATNP-----------------VLRDVLEKLDGGLRFDGSDMLLPYLY-----ATTST 294 Query: 325 LFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 L DY+ L V+ E + Y R + G +P Sbjct: 295 LGDYVRPGALSVLLEPRSLFDDMSHAYDDAAGRAK-----GSSIP--------------- 334 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR--PVATQVDDLLSEIRQR 442 + A PG + ++R G +D + V+ VA D L +R Sbjct: 335 ----VDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELPVKRVEVAGHPDKLFGRLRSL 390 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVR-YLHSDIDTVERMEII-RDLRLGEFDVL 500 + V+ + R +D+ +HG ++ L ++ D E I R LR G +V+ Sbjct: 391 VDTDYTVVFSASNFRARQDMKLAFVDHGLPIQETLDAEEDADELEGIAKRRLRRGVVNVV 450 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 L G+ +P+ L + +D +G S Sbjct: 451 DVDVPL--GMIIPKAKLAIVSLSDTQGASTSR 480 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 81/221 (36%), Gaps = 22/221 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-----DDLLSEIRQRA 443 + +SATP ++ S V D + +L P E RPV V D + IR+ Sbjct: 768 VLTLSATPIPRTMQMSLSGVRDMSL----ILTPPDERRPVEVHVGEWDPDVVSGAIRREL 823 Query: 444 AINERVLVTTLTKRMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A +V + R E+ + RV H + + ++ D GE DVLV Sbjct: 824 ARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDVLV 883 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D P + + I D+ + G + + Q GR R+ Y + P Sbjct: 884 ATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGRVGRSCTQ---AYAYFMFPEH 936 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + E R EH G+ + D+ G Sbjct: 937 MELTEEAAARLTALN----EHTDLGSGMRIAMRDLEIRGAG 973 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 87/519 (16%), Positives = 168/519 (32%), Gaps = 54/519 (10%) Query: 33 AHQTLLGVTGSGKTFTIANVIADL-QRPTMVLAPNKTLAAQLYGEMKEF-FPENAVEYFV 90 + + G GS I ++A + R + L P+ A L + +A + Sbjct: 84 GTRHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEA 143 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD-VVVVASVSAIYGLG 149 + + ++ D + + Q RL+ + V+V ++A+ Sbjct: 144 AGSTTFGRVLLYLPNEASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKV 203 Query: 150 -DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 D + + +D+ A+ RL Y R+ GTF VRG ++D++ A S Sbjct: 204 VSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVW-APSA 262 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R++ + + V + F+P + V+ + I P + + +A + ++ Sbjct: 263 ELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACD 322 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + L+++ + G E Y + Y Sbjct: 323 VIDFPSTKARALVDD-------------VASGRAFFGAEGYLPAFIDLA------SFTSY 363 Query: 329 LPADGLLVVDESHVTIPQIGGMYRG---DRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 LP D L+++++ + DR+ K+ E F L S ++ A Sbjct: 364 LPDDALILLEDPSSVTAAVRNELGRAGADRSHKDR--EPHFPLASFYEDEAHVASWLGAR 421 Query: 386 APQTIYVSATPGN-------YELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDD 434 A ++ + G E DV R L+ I+ R +D Sbjct: 422 AVLALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDP 481 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ + RVL+ + E L L RV+ D Sbjct: 482 LVRRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDP--------AFFD 533 Query: 495 GEFD------VLVGINLLREGLDMPEVSLVAILDADKEG 527 G LV L G+ P L + + + G Sbjct: 534 GSSSASPRDTALVVTGSLARGVIAPAEGLALVTEEEIFG 572 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 89/259 (34%), Gaps = 25/259 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP L+ + + D + T +D V + +L E R Sbjct: 873 VLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAVLREAVLRELGRGG 932 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + A L E + R+ H + + + D G +DVL Sbjct: 933 QVFYVYNRVEGLYERAARLAELVPSA--RICVAHGQMSEQSLEQAMLDFVEGRYDVLCAT 990 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + I AD G + L Q GR R+ +A Y I P Sbjct: 991 AIIESGLDIPRANTILIDRADMFGLSQ----LYQLRGRVGRSKE-RAYCY--LIVPPPNA 1043 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 E R E +++ E G +D+ G G + V Sbjct: 1044 MTDEARARIEALERHTE----LGSGFQIASLDLELRGSG------DLLGAEQSGT-VAQV 1092 Query: 624 PMDMSPKALQQKIHELEGL 642 ++ + L + +HEL G Sbjct: 1093 GFELFCQMLDEAVHELRGE 1111 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 108/546 (19%), Positives = 197/546 (36%), Gaps = 87/546 (15%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + I+ L+ L G L S A + A++ T+++ P Sbjct: 3 TKPLIELLSKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRP 62 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A + + + +D + + D E+ AS + RLSA Sbjct: 63 EEAQNVADSLSTYL-----------WDPKRVLLWPAHDDLPYERIASPTQDSPFRRLSAL 111 Query: 128 KAML--ERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 + +L +R +++VASV +I + + G +D A+ R+AEL Y+ Sbjct: 112 ERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSPV 171 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI- 243 + G F RG + DI+ S D+ +R+ELF +EVE + LFDP T + I F+I Sbjct: 172 ASVEEVGQFSRRGGIFDIW-TPSSDLPIRLELFGDEVESIRLFDPETQRSTREIESFSII 230 Query: 244 ----YPKTHYVTPRERIVQA-MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 P Y + ER+ Q + ++ E+ + K LE + + Sbjct: 231 SPYEIPVAEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLPAIHSIIAPY----- 285 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + SG+ N L DYL ++ D + R Sbjct: 286 ---FPSGLGN----------------LLDYLSEGTIVFTDLPDRLALTASTL-RSHIEGM 325 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 +E +PS L + ++ E A P + + G++ Sbjct: 326 RLEMEQSGDIPSNLLSPVFEWSYIEDRLK------ALPKIEPVNSAEGNLKFY------- 372 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 P ++R + D L R+ I+E V +T+ E + +EH + Sbjct: 373 --PAPQIRSSTIDIVDNL-----RSWIDEGRTVFIVTRHH-ERIRHVAKEHNLPLA---- 420 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFL-----RSER 533 + D++ G+ ++ G +++G +++LV + D + G+ RS R Sbjct: 421 ---------LDEDVKQGQMFIVPGS--IQDGWICDDINLVVLSDTELWGYREPRRARSPR 469 Query: 534 SLIQTI 539 Q + Sbjct: 470 KAPQRV 475 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 14/191 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L+ + V D V T D + + + D ++ + R Sbjct: 752 VLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPVYTYIVPKNDSIIRDSIIRELERGG 811 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + ++A L E + E V H + + +++ D +DVLV Sbjct: 812 QVFYVHNRVQDIYKVAHKLQEMVPEARITVA--HGQMPEQQLEQVMLDFMHHHYDVLVCT 869 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + + DA G + L Q GR R+ N Y + A+ Sbjct: 870 TIIESGLDIPNANTLIVDDATHMGLAQ----LYQLRGRVGRSSNR---AYAYLMYRPDAR 922 Query: 564 AIGETERRREK 574 + ++R E Sbjct: 923 MTEDAQKRLEA 933 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 63/345 (18%), Positives = 118/345 (34%), Gaps = 36/345 (10%) Query: 47 FTIANVIADL--QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 N+ L + +++AP+ A LY + + +A + Q Y Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSA---------WQQTLYYFSD 65 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTV 163 +T + + + R+ + +V+ S SA P +L K +H V Sbjct: 66 WETLPYDHYTPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAV 125 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G I Q+ ++ RL + Y ++G + RG ++D+FP + +R+E D+E++ Sbjct: 126 GDHIAQKTVINRLLQAGYQSTHFISEKGEYATRGNIVDLFPM-AAQTPIRLEWLDDEIDS 184 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + FD T + + +I P V + ++ Sbjct: 185 IRFFDLKTQLTLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGEHIHQ---------- 234 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV-VDESHV 342 + ++E G+E Y + L DY P++ + DE V Sbjct: 235 -------SGIYQSLSEGRTPQGLEYYLPLF-----FDETAHLLDYFPSNTCYIPADELAV 282 Query: 343 TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 ++ R L E P L P + +E A P Sbjct: 283 SLQNHDDYCHKRYQRLNHLRENSLLAPEQLWFSPQELQERLATLP 327 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 12/184 (6%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINERV 449 ++ATP L + + D + T ++ + +Q D ++ E + ++ Sbjct: 720 LTATPIPRTLNLALSGLRDLSIIATA-PAGRQSIQTIISQYDPIVIEEACERELNRGGQI 778 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + + L E + R H + +I++D +D+LV ++ Sbjct: 779 YFLHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIE 838 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 G+D+P + + I ADK G + L Q GR R+ + Y ITP+ + Sbjct: 839 SGIDIPNANTIIINRADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLITPAWQTLNKD 891 Query: 568 TERR 571 +RR Sbjct: 892 AQRR 895 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 89/423 (21%), Positives = 153/423 (36%), Gaps = 79/423 (18%) Query: 7 LNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 L + P AIR + +TL+G IA++ ++ T Sbjct: 94 LEAPLHPLLKTLNQLSNWAAIRTAASAQPTERSARTLIGAVAGTHAALIADISTAVRDTT 153 Query: 61 -----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 +++AP A L ++ + P + F P+ +T + S Sbjct: 154 AEALSLIIAPTDRQAEDLAAALRSYLPAADIALF-------------PAWETLPHERLSP 200 Query: 116 NEHIEQMRLSATKAM---LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 RL +AM ++R VV+A V A+ + +HL G + + Sbjct: 201 RSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEPVHLVRGEEYPFKDV 260 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 +R L + Y+R D +RG + VRG +ID+FP + +R+E F +E++ + F Sbjct: 261 VRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQ 319 Query: 233 QIV---STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + T+ P + E + +A +K + A +L Sbjct: 320 RTLSGGEELTELTLLPCRELLITPEVMSRA-ARLKADYPAAAAML--------------- 363 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 E + Y G+E+ + L E TL + LPA +++ E Sbjct: 364 -----EKIAGGIYVEGMESLTPLLI-----ESMNTLTELLPAGSMIINVEPERV------ 407 Query: 350 MYRGDRARKETLVEYGFR-LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 RAR E LV L +A D E +A+AP G + SG Sbjct: 408 -----RARAEDLVATNEEFLAAAWDTS----AEADAVAP------IDLGQLRMSDSGFRT 452 Query: 409 VDQ 411 +DQ Sbjct: 453 IDQ 455 Score = 48.6 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 3/145 (2%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP LE S + + T + + V + D ++ +R + E Sbjct: 924 VLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREIMREG 983 Query: 449 VLVTTLTK-RMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + +D+ + + R H + +II D FDVLV + Sbjct: 984 QVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTI 1043 Query: 506 LREGLDMPEVSLVAILDADKEGFLR 530 + GLD+ + + + A G + Sbjct: 1044 VETGLDISNANTLIVDHAQNYGLSQ 1068 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 83/485 (17%), Positives = 168/485 (34%), Gaps = 46/485 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 IR + L G + + + + +A + L RP +V+ P + A +L + + Sbjct: 24 IRTVASRLASGQSLVAEE-LPVAARPAVLAALARILDRPLLVIVPRQAHADELADAVGQL 82 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 E VE + + +T + + R + M E + +A Sbjct: 83 LGEIPVEVWQAP-------------ETLPYDVFAQDRASAVERSWFLQRMTEPSPGLFIA 129 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 + L P + L L VG + + +L L + YA Q G+F RG + Sbjct: 130 PARGLLQLLPPNESLRGCPLTLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGI 189 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D++P +D +A+R+E F +E++ + F+P T + V + + P + P+ + Sbjct: 190 VDVWPPGND-LAVRIEFFGDEIDSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQAAAT 248 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + + R +V E +L ++ + L+ Sbjct: 249 KLRRLDTSSLRPEVREEWERLCQQIERGELVP------------------LPELALPFVF 290 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 +L D P +VV + I + + +ET G LP L Sbjct: 291 PEASSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELRETSELSG-ELPRGLPRPYHPD 349 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + + + + + GD+ + T ++ +A ++D L + + Sbjct: 350 DRIWTSLRVHPILWL-GTVEQGDSANGDIPSDLGFTT-------DIPAIAGRLDTLPAVL 401 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 A + V + T A+ L L E + T+ R + + E + Sbjct: 402 APFLAEDYAVTLVTE---QADRLAHLLSESSQYAEAASIAASTIARGRLPGGWKHREARL 458 Query: 500 LVGIN 504 L+ + Sbjct: 459 LLLTD 463 Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 95/256 (37%), Gaps = 23/256 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + V D V T +D V D ++ E I + A Sbjct: 764 VLTMTATPIPRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPARDSVIREAILREIARGG 823 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V V D + L R+ H + E II D ++DVL+ + Sbjct: 824 QVYVVHNRVHSILDFAQRLRGLVPEARFAVAHGQMPEQELERIIVDFIERKYDVLICTAI 883 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + I A + G + L Q GR R+ +A Y + + + Sbjct: 884 IESGVDIPSVNTIIIDQAQQLGLTQ----LYQLRGRVGRSHQ-RAYAY---LLYDDRRPL 935 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 R R + + E G GL + D+ G NI + G V Sbjct: 936 SAEARARLEAIQEATELG---AGLQIALRDLEIRGAGNILGPEQSG--------HIAAVG 984 Query: 625 MDMSPKALQQKIHELE 640 +++ + L + + EL Sbjct: 985 LELYTQLLARAVQELR 1000 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 103/499 (20%), Positives = 168/499 (33%), Gaps = 75/499 (15%) Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + AA+L + F P V F P+ D S N I Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILF-------------PAWDCLPYDRVSPNGDIVAR 91 Query: 123 RLSATKAMLE----RRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLA 177 R+ A +LE R +++V +V+A P L + VG I+ + R LA Sbjct: 92 RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y + + G F VRG ++D+FP + + LR++LF ++++ + FDP+T Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F + P + I + +E A E + Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRELFGAVTGD-----------------DPLYEAV 253 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHV------TIPQIGGMY 351 + +G+E++ TLFDY+P + + + HV + Q+ + Sbjct: 254 SAGRKYAGMEHWLPLFHSGL-----ETLFDYMPDAPVTL--DPHVEEARDQRLEQVRDFF 306 Query: 352 RGDRARKETLVEYGFRL--PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 R +E + G + P L E ++ TP S D+ Sbjct: 307 EARRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHLAVRPVAQLTPFAAAEAGSNPDLT 366 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 D R G V+ D L + A RV+V + + L L+EH Sbjct: 367 DAGGRK-GRDFADARVQSGVNVYDVLREHVGALLADGRRVVVAGYSTGARDRLRSVLKEH 425 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL----LREGLDMPEVSLVAILDADK 525 G ER++ + E L L G P L I + D Sbjct: 426 GI------------ERVKAVESWAEVEGLPRTTTALVVLALDHGFTAP--GLAVITEQDI 471 Query: 526 EGFLRSERSLIQTIGRAAR 544 G L++ GR R Sbjct: 472 LG-----DRLVRAGGRKKR 485 Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 8/175 (4%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L+ + V + + T +D + V ++ E I + Sbjct: 769 HVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRG 828 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + E + LEE V+ + H + + E++ ++DVL+ N Sbjct: 829 GQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFDEHKYDVLLATN 888 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 ++ GLD+P + + + AD G + L Q GR R V G A L T Sbjct: 889 IIESGLDIPSANTLVVHRADLFGLAQ----LYQVRGRVGRAKVRGYAYLTYQPRT 939 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/355 (19%), Positives = 122/355 (34%), Gaps = 43/355 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDG-LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 L+ + D+P R E E G A Q + + + FT+A + A +R + + Sbjct: 5 DLSGLLNAALDEPGLARVRELAAEGGPTAEQVHVTAPAAARPFTVAAL-AQAERTVLAVT 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 +L + P+ +V ++ P+ +T + S RL Sbjct: 64 ATSREGEELTQSLAGLLPDGSVAFY-------------PAWETLPHERLSPRSDTVGKRL 110 Query: 125 SATKAMLERRDV---VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + + + VVVA V ++ L + L VG D + L++L Y Sbjct: 111 ALLHRLAHPQGAPLRVVVAPVRSLLQPQLKGLGDLKPVRLAVGESTDLSDLAAELSDLAY 170 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 AR D +RG F VRG ++DIFP +D+ RVE F +E+E + F + + Sbjct: 171 ARVDLVEKRGEFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSFAVADQRSLDKADTL 229 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 P + +A EL + L E + + Sbjct: 230 FAPPCRELLLSPRVRERA-----AELGQQHPGL----------------AELCEQLAQGI 268 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 G+E+ + L G + +P ++V + + + Sbjct: 269 PVEGMESLTPALLG---ADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSEE 320 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 11/149 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-----DLLSEIRQRA 443 + +SATP LE + + + T P E PV T V + + IR+ Sbjct: 954 VLAMSATPIPRTLEMAITGIREMSTITT----PPEERHPVLTFVGGYEDKQVGAAIRREL 1009 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 + +V E L E R + H + +I++D GEFDVLV Sbjct: 1010 LRDGQVFYLHNRVESIEKAATRLREIVPEARVVVAHGKMGENRLEQIMQDFWNGEFDVLV 1069 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLR 530 ++ G+D+P + + + AD G + Sbjct: 1070 STTIIESGIDIPNANTLIVERADLLGLSQ 1098 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 23/284 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF ++ + + + + G S KT + + + +V + ++ Sbjct: 3 AFLEPLEELADYQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYRVIVFS-SEEK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q Y E + EN Y P+ D + R+ K Sbjct: 62 AKQAYEE-YKMLEENTFLY--------------PAKDLLFYHADIKGAALTGKRMEVLKK 106 Query: 130 MLE---RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + E R V V+ + A GL + + + + G +ID + + L L Y R Sbjct: 107 LTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERES 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + + IYP Sbjct: 167 QIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T V +E+ V E +E E +L E ++ Sbjct: 226 ATENVEKKEQAVSFSEYFPKE--ESLFFFDEPVRLQETLEAVEK 267 Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 96/260 (36%), Gaps = 21/260 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S + D V +D I+ + + + I + + Sbjct: 718 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEFNDEMIREAIERELSRGG 777 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V D+ +++ V + H + E +I+ D GE DVLV + Sbjct: 778 QVYYVYNRVEDIADVAGRVQKLVPGASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTI 837 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + I DAD+ G + L Q GR R+ + Y + K + Sbjct: 838 IETGLDIANANTMIIQDADRFGLSQ----LYQLRGRVGRSSR---MAYAFLL-YRRDKLL 889 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R + + G G+ + D+ G +A+ V Sbjct: 890 KEVAEKRLAAIREFTDLG---SGIKIAMRDLEIRGAGNLLGEAQSG-------HMAAVGY 939 Query: 626 DMSPKALQQKIHELEGLMMQ 645 D+ K L + + EL+G + Sbjct: 940 DLYCKMLNEAVKELKGEKEE 959 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 80/472 (16%), Positives = 168/472 (35%), Gaps = 60/472 (12%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + GS + + + +++ + A ++Y E+K N+ Sbjct: 12 VVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDI------ 65 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRDVVVVASVSAIYGLGDPDLY 154 + P+ + S + I R M + ++ +++ S+S P + Sbjct: 66 ----LFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASF 121 Query: 155 -LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + L G +D L E Y + F++G F +RG +IDI+P S +A R Sbjct: 122 IQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGS-KVAFR 180 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++LFD E++ + + + + + I I P V + A++++ Sbjct: 181 IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKL---------- 230 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 NKL ++ L ++ Y SGIE Y + +L+DYLP Sbjct: 231 ----NKLCGDKALNSTIATYIQNNE---YFSGIEFYLPLFY-----DKLSSLYDYLPPST 278 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 + + ++ I + R L +RP+ L Q I+ S Sbjct: 279 NIHLVDN--ITNSIEAFSDEVKFRYNEL--------KHDSDRPI-------LPFQEIFYS 321 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI--IEVRPVATQVDDLLSEIRQRAAIN--ERV 449 ++ Q + + + +E ++ + +++Q + ++V Sbjct: 322 QQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDKSNFDKV 381 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME----IIRDLRLGEF 497 + +T + AE L E+L + ++ + + +E II + G Sbjct: 382 IFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEASTKFCLIISPFQEGMI 433 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 14/188 (7%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 +SATP L + + D + + + V ++++ E R I + Sbjct: 751 MSATPIPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETIRGGQIF 810 Query: 452 TTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 K + E L E R+ H + E +++ D + ++ +L+ ++ Sbjct: 811 YLYNKVETIQKKKEILQELFP--RLRIAIAHGQMSEKEIQKVMFDFKHNKYHILLCTTII 868 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 G+D+P + + I DA+ G + L Q GR R+ + Y + P+ A Sbjct: 869 ETGIDIPNANTLIIEDANNLGLAQ----LHQLRGRVGRSHHQ---AYAYMLIPNEASITK 921 Query: 567 ETERRREK 574 + +R E Sbjct: 922 DALKRLEA 929 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 118/326 (36%), Gaps = 28/326 (8%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 L ++ S + +A+ + +++ N A +LY + E V +F Sbjct: 19 KKESKLGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGE-KVLFFG- 76 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA-IYGLGD 150 ++ + + + + ++ + + + +VV + +A I+ L Sbjct: 77 ------------VEESLRVEAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPA 124 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P+++ + + + + + L E Y + Q + RG +ID++ + Sbjct: 125 PEVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYE-Y 183 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 LR+E FD E++ + FD T + + I +I P + + E I + ELA Sbjct: 184 PLRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANV 243 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + LE DL+ + + +R R T+ DY+ Sbjct: 244 KGFTNASKEHLEA-----IVNEDLDAI------ANHSPEARLYKYRAFLNQQATIMDYVK 292 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRA 356 ++V E V I + A Sbjct: 293 NACVIVSSEEEV-KDSIKHAAEENIA 317 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 102/277 (36%), Gaps = 24/277 (8%) Query: 378 KFEEFEALAPQTIYVSATPGNYELEKS--GGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 K +EF+ + +SATP L+ S G + Q+ P P ++ + + Sbjct: 742 KIKEFKNTVD-VLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMP-VQTYVIEKNFAMI 799 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLR 493 I++ A N +V + ++ L E V H + + +++ Sbjct: 800 KEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMSREDIEDVMLQFT 859 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 + VLV ++ G+D+P + + I +AD G + L Q GR R+ + Y Sbjct: 860 ENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ----LYQIKGRVGRSDR---LAY 912 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + S + + E +R K K + G G + D+ G + Sbjct: 913 AYLM-YSPQRQLSEIAMKRLKSIKEFTQLG---SGYKIAMRDLTIRGAGDMLGPQQAGF- 967 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 D V +DM + L I E +G+ + + L Sbjct: 968 ------IDTVGIDMYIEMLNDAIMEEKGIKKEVKKEL 998 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 119/655 (18%), Positives = 221/655 (33%), Gaps = 76/655 (11%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 R + L + L G + +A +A L+RP +++ P A + F Sbjct: 24 REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH-IEQMRLSATKAMLE--RRDVVV 138 + V + +PS +K S+ + R+ A +V V Sbjct: 84 GNDLHRQDVPAD---RRVWCLPSRS--GQKSQSLGKMATMARRMETLHAFRASIGSNVFV 138 Query: 139 VASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 ++V+ + L P++ L + G ++ + L E Y R + G F +RG Sbjct: 139 TSAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGG 198 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 V+D++ A LR+E F +E+E + LF P T + + + + P + + + Sbjct: 199 VLDVY-APLYRWPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARER 257 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A E + ++ E + L+ + E E+ Sbjct: 258 AREAVYADVR-------------EGRLTPAAGNVWLDKLQEGHQFGAFESIMSVFY---- 300 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYG-FRLPSALDNRP 376 E T+++YL ++V ++ + + R E + R PS L P Sbjct: 301 -EKTVTVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIP 359 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ---VD 433 + Q I S + G V D +G + VR A + ++ Sbjct: 360 ERLIADGESFQQLIVNSLSGGTEP-----RAVFDM--GTSGHEQLALSVRAHAEKERLLE 412 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + ++ + K A L+E LE HG Sbjct: 413 PLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHGTDTVLTLLPFGA-------ESYE 465 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 V+VG L G P L + A++E F + R R+ ++V+G Sbjct: 466 APAVKVIVGS--LDRGFVWPAERLAVV--AEEEIFGKRTRR------RSGKSVSG----- 510 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG---QNIAKTKAKG 610 + + + +HGI G+ K++V + G + G Sbjct: 511 ---------LFLSSFQDLHIGDFVVHVDHGI---GVYKELVHLAVRGIESDFLLLEYQDG 558 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + V + + Q KI +L G + A+ E A ++ ++L L Sbjct: 559 DRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSL 613 Score = 61.4 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 18/174 (10%) Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 ++ H + + +++ D + DVLV ++ GLD+P + + I ADK G + Sbjct: 879 KIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQ- 937 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + Q GR R+ +A Y + R +K+ + + G Sbjct: 938 ---IYQLRGRVGRSSE-QAFAYL------LIPGEHLISRDAQKRLRALLDFSELGAGFKI 987 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + D+ G G S+ V ++ + L++ I E++G + Sbjct: 988 ALNDLQIRGGGTI------LGSSQSG-HIAAVGYELYLELLEKTIKEMKGEERE 1034 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 82/420 (19%), Positives = 149/420 (35%), Gaps = 49/420 (11%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 + +A + L + F PE V F P+ D AS Sbjct: 49 LVFVAADDQAMQSLADAARFFAPELTVLTF-------------PAWDCLPYDRASPALRA 95 Query: 120 EQMRLSATKAMLERR--DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRL 176 RL+ A+ + V+V +V+A+ P +++ L G +D+ + L Sbjct: 96 TSERLATLHALQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAML 155 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 Y R D ++G + VRG ++D+FPA + ALR++ F +E+E + FD + + Sbjct: 156 QANGYIRTDTVTEQGEYAVRGSLVDLFPAG-EPHALRLDFFGDEIESVRQFDATDQRTIG 214 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + FT+ P + + E I + +E A + Sbjct: 215 PVDGFTLLPASEALLDEETIKRFRGRYRERFGASA-----------------TGDPIYQA 257 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG----GMYR 352 +++ +G++++ E TLFD+L + L++ + + + Y Sbjct: 258 VSDGRRLAGMDHWLPLFE-----ERLETLFDHLAPEDLILREAGSIKAAEARFEAIADYH 312 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 +R R T +R P L +E+ TP E V+D Sbjct: 313 ANRVRARTTDPGSYR-PLEPGELYLAADEWRTAIADRPIHLVTPFA---EPESARVLDLG 368 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 V G D E D ++ + +RV++ + + E L EHG Sbjct: 369 VD--GARDFAPERTQGVNIYDAVIEHVEALGKAGKRVVLASYSTGSRERFAGLLAEHGLD 426 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 10/179 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINERV 449 ++ATP L+ + + + V T +D + VA ++ E +R+ + Sbjct: 804 LTATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYVAPWDGVVIREALLREHYRGGQSF 863 Query: 450 LVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 LVT K + + + +YL + V Y+ H + E E + +FD+LV ++ Sbjct: 864 LVTPRIKDLPD-IEDYLRKEVPEVSYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIE 922 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG 566 GLD+P + + + AD+ G + L Q GR R+ +A Y + + Sbjct: 923 SGLDIPSANTLIVNRADRFGLAQ----LYQLRGRVGRS-KTRAYAYLTTGDRGLTETAE 976 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 83/435 (19%), Positives = 154/435 (35%), Gaps = 55/435 (12%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 GV+ S ++ + V+ PN A + Y + E+ V ++ Sbjct: 25 GVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFY--------- 75 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGL-GDPDLYLK 156 P T A + + RL + +L+ D +++ + I P+ Y + Sbjct: 76 ----PMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYER 131 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 + ++V D + ++L Y N + G F +RG ++DI+ R++ Sbjct: 132 SVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIY-THDYKDPYRLDF 190 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F + +E + FD T + ++ I I P E QA+E+I + + + E Sbjct: 191 FGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKE 250 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + KL + DL + E + Y F + T+ D+ L++ Sbjct: 251 DKKL----------ETDLMHIEERKRMDSLSMYIEFF-----NDEVTTILDFSNPYDLIL 295 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 VD M + + L+ Y + E F L + Sbjct: 296 VDSY--------KMELNEETTYQDLLTYSHTMQG---------EAFIGLNFKVKLKELLK 338 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N+ L V D+ G+LD V P ++ L+ I + N +L++T T Sbjct: 339 KNH-LSFQIYSVSDKPSTDLGVLD----VDPFVGHLEQLILFINEYNGFN--ILISTKTM 391 Query: 457 RMAEDLTEYLEEHGE 471 E + E+L H Sbjct: 392 VSFERIKEHLTNHKI 406 Score = 74.1 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 23/252 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 T+ +SATP L+ + + D + T L+ V + L+ E I + + Sbjct: 745 TLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGG 804 Query: 448 RVL-VTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + T+RM + + L++ R Y H + + + EFD+LV Sbjct: 805 QVFYLFNNTERMEAQVLK-LQQLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTT 863 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I DAD G + L Q GR R+ I Y + Sbjct: 864 IIETGVDIPNTNTLIIHDADHLGLAQ----LYQLRGRVGRSDR---IAYAYLMFDGYKDV 916 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 E ++R E+ G + D+ G G+ + D+V Sbjct: 917 NDEAKKR----LSVIEDFTDLGSGFKIALRDLGIRGAG------DILGEEQSGF-IDSVG 965 Query: 625 MDMSPKALQQKI 636 MD+ K L + + Sbjct: 966 MDLYMKLLDEVM 977 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 126/351 (35%), Gaps = 27/351 (7%) Query: 28 LEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 L L G+ GS +F I + + + P +++ +K AA + +++ F E+ V Sbjct: 16 LPTETKTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVL 75 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDVVVVASVSAIY 146 ++ + Y + + + +R + + + + +V+ AI+ Sbjct: 76 FYPASYKK-------------PYQHSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIF 122 Query: 147 -GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 + K L+L G +I + L E + R D G F VRG ++D+F + Sbjct: 123 EKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVF-S 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 + D R+E F EEVE + FD ++ + ++ +I P + + Sbjct: 182 YAYDHPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDTLTKRQDFFSFTDK 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + + + +E +FD +E + L Sbjct: 242 KTTVLIRKPGVLKQKIESLYKEAVLKFDT-----------LEGEIAQIPPENLYVQSKEL 290 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 F L + ++ I Q+G + D A L+++ A + + Sbjct: 291 FGALEKHQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQPAFNKKF 341 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 85/409 (20%), Positives = 157/409 (38%), Gaps = 40/409 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ--RPTMVLA 64 + + Q + +R + + L G+TGS K + + +Q +P ++L Sbjct: 1 MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 N+ E+ F+P+ A+ P+S + D + NE + R Sbjct: 61 VNRESIRAQRRELAHFYPDLAMR------------ELYPASLIHGQVD-TRNEQVMAERA 107 Query: 125 SATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +A + ++ + ++ A+ +AI L P+ ++ L L VG I+Q ++ +L + Y R Sbjct: 108 AALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +Q G VRG+++D+FP D +R+E FD ++ + FD T + + TI + I Sbjct: 168 TEQVDTLGQVAVRGDILDVFPINGKDS-VRIEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226 Query: 244 YP---------KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE-----EQRLTQR 289 P + + + ++E +K +N + + E + Q Sbjct: 227 MPLAVPNQEISASLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLDQETMIQQA 286 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE-SHVTIPQIG 348 + L +++LG+ + R P D L D +D+ H I Sbjct: 287 GETHLLTVSDLGHPYFPQA-PRIHVQVRAMAPYNKNTDLLQKDLKGWLDQGIHPLI---- 341 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 M D+A G LP A + E Q S T G Sbjct: 342 MMGTRDKAAGLAESLKGAGLPMAFAGQFQGVPE---TGGQVFAGSLTNG 387 Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 23/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP L + D + + D + VA D ++ E +R Sbjct: 702 VLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDDGMVREALEREIRRGG 761 Query: 449 VLVTTLTK-RMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + +L E G + H + E +++ G+FDVL+ + Sbjct: 762 RIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTI 821 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I A+ G + L Q GR R+ + Y + + + Sbjct: 822 IENGLDVPLANTIIIDGAENFGLSQ----LYQMRGRVGRSSR---LAYAYFL-YKKDRVL 873 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E ++R + + E G G + D+ G N+ + G + V Sbjct: 874 SEVAQKRLQAIRDFTELG---AGFKIAMRDLEIRGAGNLLGAEQHG--------QITGVG 922 Query: 625 MDMSPKALQQKIHELEG 641 D+ + L++ I+ L+ Sbjct: 923 FDLYCRLLEKTINTLQN 939 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 113/275 (41%), Gaps = 21/275 (7%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + P+ + L+E + G + + + K + + + ++L + Sbjct: 3 EELFKHPKLLE-LQEAFKQGD-PVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEES 60 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM- 130 +LY + F P P+ +T ++ + + R A + + Sbjct: 61 RLYHDFPFFSS--------------APLLEFPAWETLPSENIAPSPDTVGARYKALRQVS 106 Query: 131 LERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + ++++ + + + L P + + L L G +++RL E+ Y R+ A Sbjct: 107 ATFQPHIIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAAD 166 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG +IDIFP S D R+E + +++E + +FDP+ + + T+ I P Sbjct: 167 KGEFAIRGGIIDIFPVASPD-PFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEM 225 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 ++ + I + L + V+ ++ LE++ Sbjct: 226 ELIQQ--SSKLSTILDYLGPQTIVIFDDLLALEDR 258 Score = 71.8 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 33/273 (12%) Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLD--PIIEVRPVATQVDDLLSEIRQRAAINE 447 I +SATP L S D V T D PI + + + +R+ + + Sbjct: 731 ITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPITTIISEPGDLVFKNALLRELSRDGQ 790 Query: 448 RVLV--TTLTK-RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 ++ T +A + E L + RV H + E + + G D+LV Sbjct: 791 AYVIHNRVETIFGVASKIKELLPQA--RVVVGHGQMSADEIDSVFHAFKSGAADILVATT 848 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I AD+ G L Q GR R Y + P++ K+ Sbjct: 849 IIESGIDIPNANTILINRADQFGLA----DLYQLRGRVGRWNRR---AYAYFLVPNL-KS 900 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 + + R+R E G+ + D+ G NI T+ G + + Sbjct: 901 LPQLARKRLHALA---EACGYGGGMKLAMHDLEIRGAGNILGTEQSGHVSA--------I 949 Query: 624 PMDMSPKALQQKIHELEGL----MMQHAQNLEF 652 K L++ I L+G M++ LEF Sbjct: 950 GFHFYCKLLRRTIQTLQGELSAGMVE--TKLEF 980 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 15/219 (6%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I ++ LQ+P +++A ++ A Q+Y + E F EN V +F Sbjct: 24 KNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEENMVHFF--- 80 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGDP 151 P + A + RL A +L ++ +V+++ A+ Y L Sbjct: 81 ----------PVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAA 130 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + L L V + + I L Y R+D G F +RG+++DI+P Sbjct: 131 IKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIA-YP 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 R+E FD+E++ + F+ ++ + ++ I P + Sbjct: 190 YRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADDQL 228 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 27/259 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAIN 446 + ++ATP L S V D V T + V + +++ E +R+ A Sbjct: 712 VLTLTATPIPRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNG 771 Query: 447 ERVLVTTLTK-RMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + K + + YL + R Y+H + + +I+ +FD+LV Sbjct: 772 Q--IFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTT 829 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P V+ + + +AD G + L Q GR R+ + Y + K Sbjct: 830 TIIETGVDLPNVNTLLVENADTYGLSQ----LYQLRGRIGRSSR---LAYAYFL-YKRDK 881 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 + E +R + G G + D+ G NI + G D+ Sbjct: 882 VLTEVSEKRLNAIRDFTALG---SGFKIAMRDLSIRGAGNILGKQQHGF--------IDS 930 Query: 623 VPMDMSPKALQQKIHELEG 641 V D+ + L Q I + G Sbjct: 931 VGYDLYAQMLDQTIKQKRG 949 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 61/325 (18%), Positives = 115/325 (35%), Gaps = 37/325 (11%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + + L+ G + + GS ++ +++ N AQL E Sbjct: 19 QQQISELKLKQLKAGEKR-WIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESE 77 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ Y P + S ++ I RL+ M + Sbjct: 78 LEF---------------YGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMP--QTG 120 Query: 137 VVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V++ S S + P + L + VG +D RL + Y D + G F V Sbjct: 121 VLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAV 180 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+ A + +R++LFD+E++ L FDP T + + +F I P + Sbjct: 181 RGSIMDIY-ASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFP----- 234 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + + +E A + + L + G+E Y Sbjct: 235 LKEGRSIFRERYAEAFPTANPKKNPIYQDVL------------DGIASPGVEFYLPLFFE 282 Query: 316 RGPGEPPPTLFDYLPADGLLVVDES 340 +G E YLP + +++ +++ Sbjct: 283 KGQMESQSYFTAYLPRNCIVITNDA 307 Score = 69.8 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 10/183 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 ++ATP L + + D + T + V DD + E I + +V Sbjct: 775 LTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVY 834 Query: 451 VTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E E + RV H + E ++++ E++VLV ++ Sbjct: 835 FLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIET 894 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + + ADK G + L Q GR R+ + Y + PS+ G+ Sbjct: 895 GIDVPNANTIIMERADKLGLAQ----LHQLRGRVGRSHHQ---AYAYLLVPSIKHLKGDA 947 Query: 569 ERR 571 E+R Sbjct: 948 EKR 950 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 96/521 (18%), Positives = 179/521 (34%), Gaps = 79/521 (15%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-----IADLQRPTM 61 L F P+ +Q I + ++ L + + +A++ R + Sbjct: 39 LTDIFTPTNEQLFPIDKAQKRW--------LYPAYAAAGSLWLASLSDCPVANVANRLKV 90 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ ++ Q+ E+ + V P +T + S ++ I Sbjct: 91 VVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYDELSPHQDIVS 135 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 R++ M ++ +++++ + + + P + L+VG I D LA Y Sbjct: 136 ERINLLTDMP-KQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAGY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 D F+ G F VRG VIDIF A LR++LFD E+E + F+P T + +ST Sbjct: 195 RAVDNVFEPGEFAVRGSVIDIF-AMGQPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTLM 253 Query: 242 TIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ--------------- 284 + + + + +L K + + L ++ Sbjct: 254 DLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNFA 313 Query: 285 ----RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 ++ R + + SG+E Y LF Y P D L ++DE+ Sbjct: 314 AMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFPKDTLFIIDEN 373 Query: 341 HVTIPQ--IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + R R+ ++ P+ L E P+ I + Sbjct: 374 TAEAQADYWSQIQRRYEERRHD-IDKPIVEPTLLYLPSNSLNEMLNAYPRVILSQSDLAA 432 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + +SG V+ L+ P + PV+ Q + L E+ A+ Sbjct: 433 ADNTQSGK------VKLPALMPPEL---PVSHQKAEPLLELLNYASAGWD---------- 473 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ TE V +T R EI+ +L G+ +V Sbjct: 474 -DNTTEAALARPILVVA-----ETAGRREILLELFRGKLNV 508 Score = 72.1 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 79/192 (41%), Gaps = 10/192 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 ++ATP L + + D + T + V + + L+ E I + +V Sbjct: 871 MTATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVY 930 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + E + E + E R H ++ ++++ +F+VLV ++ Sbjct: 931 LLHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIET 990 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + I ADK G + L Q GR R+ + +A Y + PS+ G+ Sbjct: 991 GIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRSHH-QAYCY--LLVPSVKGLKGDA 1043 Query: 569 ERRREKQQKYNE 580 ++R ++ N Sbjct: 1044 KKRLTAIERANT 1055 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 25/289 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + + G + K ++ + + +V + N+ A + Y E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYKLVVFS-NEEKAKKAYEEYLLF 72 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVV 137 E P+ D + + R+ +A+ E+ V Sbjct: 73 GEET---------------YLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117 Query: 138 VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+ ++ A G+ PD K +H+T +D + + L L Y R Q G F VR Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP ++++ +R+EL+ +E++ + +FD + + + I TIYP + + Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236 Query: 257 VQAMEEIKEE----LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 V ++ E L E + +E + M E G Sbjct: 237 VSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEG 285 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 21/256 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQ-VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + ++ATP L S + D V+ I+ + + + I + A + Sbjct: 719 VLTLTATPIPRTLHMSLIGIRDMSVLEEAPNERMPIQTYVMEYNDEMVREAITRELARDG 778 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V D+ ++ V + H + E +I+ D G+ DVLV + Sbjct: 779 QVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTI 838 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I DAD+ G + L Q GR R+ + Y + K + Sbjct: 839 IETGLDIPNANTMIIQDADRFGLSQ----LYQLRGRVGRSNR---MAYAFLL-YQRDKLL 890 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 E +R + + G G+ + D+ G +A+ + V Sbjct: 891 KEVAEKRLSAIREFTDLG---SGIKIAMRDLEIRGAGNLLGEAQSG-------HMEAVGY 940 Query: 626 DMSPKALQQKIHELEG 641 D+ K L + + +L+G Sbjct: 941 DLYCKMLNEAVRQLKG 956 >UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Desulfovibrionaceae RepID=Q72AT7_DESVH Length = 1160 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 82/421 (19%), Positives = 151/421 (35%), Gaps = 46/421 (10%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA 100 +G + N + D R +++ + A G + F P+ + +P Sbjct: 24 SGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASA----GDSPLVKPRW 79 Query: 101 YVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR--DVVVVASVSAIYGLGDPDLYLKMM 158 + N R++A A+ ++R V++ + + L DL+ Sbjct: 80 ESRWVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLITVDNFLSKLPPADLFASHE 139 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L L G + +L + + + R + G VRG+++DI+P + LR+E F Sbjct: 140 LTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYER-PLRLEFFG 198 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E +E + LFD + + + + P + V E ++ + AR K L Sbjct: 199 ETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAE--------LRSKATARWKRLFSKG 250 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV-- 336 L EEQ G GIE + L E P + ++LP D + Sbjct: 251 MLTEEQYA--------------GLLRGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILP 296 Query: 337 -----VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 VD ++ G L A R L +EE ++ + Sbjct: 297 GRKELVDAVEAAQQNWEALFDKQAEEGGARQPRGLVLRDAAPVRQL-YEEKDSAGFE--- 352 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 P +E++G D+ ++ + L P + R Q L++ + + A + RVL+ Sbjct: 353 ----PLVMGVERTGVDMPERKLHGFVDLFPAPDARDRPWQA--LVAGLHRFVATHARVLL 406 Query: 452 T 452 Sbjct: 407 C 407 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 11/186 (5%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 ++ATP L+ S + + V T + + + D L I +R E + Sbjct: 766 LTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVF 825 Query: 452 TTLTKRMA-EDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + E TEY+ + R H + E + GE DVLV ++ Sbjct: 826 WVHNRVQGLERTTEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVES 885 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD P + + + A G + L Q GR R+ Y + P A + + Sbjct: 886 GLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRSDRQ---AYAIFVVPD-ADNLSDI 937 Query: 569 ERRREK 574 R R + Sbjct: 938 ARERMR 943 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 15/241 (6%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 +A + Q A++RL + + + G+ GS K +A A L + +L + Sbjct: 2 NALFAAMLQDGALQRLRDHTQGEPRESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAE 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ PE P +P DTF K A+ ++ R+ Sbjct: 62 SLADWKEDLSLLLPE-------------VPIVELPEVDTFDVKAAAKSQERAARRMEVLG 108 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ ++V+A A G + + ++ L L +G ++ + +L RL +L Y ++ Sbjct: 109 RLVRGEHIIVLARTEAAVQKGMGRNEFKRLSLTLRMGEVLPREELLERLVDLGYEHAEEV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG ++DIF + + +RVE FD+E++ L FD T + + TI P Sbjct: 169 ERVGQFSVRGGIVDIFAINAA-VPVRVEYFDDEIDSLREFDLDTKRSTKNVGAATIMPLA 227 Query: 248 H 248 Sbjct: 228 Q 228 Score = 81.0 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 31/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-----LLSEIRQRA 443 + +SATP L S D + T P E PV T V + + + IR+ Sbjct: 704 VLTLSATPIPRTLHMSLVGARDMSIIET----PPAERFPVQTYVVENNDTIIANAIRREM 759 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + + +++E R H + ++ D G++D+L+ Sbjct: 760 KRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDILL 819 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +++ GLD+ + + + +AD G + L Q GR R+ + A Y + Sbjct: 820 ATSIVENGLDVANANTIIVYNADHFGLSQ----LYQMRGRVGRSHH-MAFAYFVYQADKI 874 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 + ET +R + K E G G + D+ G N+ + G Sbjct: 875 ---LTETAEKRLQAMKEFAELG---AGFKIAMRDLEIRGAGNLLGAQQHG--------HI 920 Query: 621 DNVPMDMSPKALQQKIHELEG 641 +V +M K L++ + L+ Sbjct: 921 ASVGFEMYCKLLEEAVERLQN 941 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 144/374 (38%), Gaps = 29/374 (7%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 G+ + L G++GS K F ++ ++ R + L P + A L +++ F + Sbjct: 13 GVLQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRL 72 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 F++ Y+ E S + + S+ ++ R SA +++ S IY Sbjct: 73 FMFLARDFYFAKENL---STLEVGRILSLQHCLDHPRQSA---------IIIATPGSFIY 120 Query: 147 GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAE 206 L P + L L G +QR IL++L Y R D ++G F VRG +IDIFP Sbjct: 121 PLPAPSAMRESSLLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLG 180 Query: 207 SDDIALRVELFDEEVERLSLFDPLTGQIVSTIP-RFTIYPKTHYVTPRERIVQAMEEIKE 265 + RVE F E +E + FD + + + + I P + E I Sbjct: 181 HKE-PCRVEFFGELIESIHRFDINSQRRLGKDEGQVKILPA-DELYGDELTCS----IFS 234 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL---SGRGPGEPP 322 L V + + +Q + + E + E I + L + E Sbjct: 235 YLDESSSVFFDEPREFYKQ-FKRSVRRYRESLKEACKDGKIIREIKLLDSEYLKKEIEAH 293 Query: 323 PTLFD-YLPADGLLVVDES--HVTIPQIGGMYRGDR---ARKETLVEYGFRLPSALDNRP 376 ++ Y P+ V S H++ ++ YR AR G ++ A+ +R Sbjct: 294 SVIYHAYFPSTIPQVAVTSLQHISQKEMEPFYRQYETLFARINDWQGKGLKVILAIKSRV 353 Query: 377 LKFEEFEALAPQTI 390 + + + L Q I Sbjct: 354 AREQIQQDLLEQGI 367 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 27/260 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 I +SATP L + + D V T + V ++++ E + + Sbjct: 696 VISLSATPIPRSLHMALTGLRDLSVIETPPPERYPITTYVLEYNEEIIVEAVMKEIERQG 755 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + R+ E L E ++ H + E ++ D G++ + + Sbjct: 756 QVFFVHNRIEDIYRVKEQLDELFPG--IKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCT 813 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLDMP V+ + + +ADK G + L Q GR R+ + Y +T Sbjct: 814 TIIESGLDMPNVNTIIVDEADKMGLAQ----LYQLRGRVGRSHR---LAYA-YLTYRPDW 865 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 I E ++R + E G G+ + D+ G NI + G ++ Sbjct: 866 VISEASQKRLNAIREFNELG---SGMKIALRDLEIRGAGNILGAEQHGYIQA-------- 914 Query: 623 VPMDMSPKALQQKIHELEGL 642 V D+ + L+Q+ L+G Sbjct: 915 VGFDLYCRLLEQETGRLKGE 934 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 80/417 (19%), Positives = 140/417 (33%), Gaps = 57/417 (13%) Query: 41 TGSGKTFT-IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + K+F I + I + ++ +++ N+ A QLY + F P + YF Sbjct: 7 PQAAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYF---------- 56 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 PS DT S N +I R + +V+ + + + L D + K Sbjct: 57 ---PSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKY 113 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L M + + + L E + RN G F VRGE++D+ ES R+ Sbjct: 114 YLKLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESK--GYRINFS 171 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + VE + FD T + I P V E I + Sbjct: 172 WDYVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDNYLRNFG--------- 222 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + E + SG E G L DYL ++ Sbjct: 223 --------VNHTDNPLYEAITGGRKFSGYEQLLPLFYDSYSG-----LTDYLNNPVIIFD 269 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF-EALAPQTIYVSATP 396 + + I + Y + LD LKF F L+P +Y ++ Sbjct: 270 NLTKQAILEFEHSYNDF-------------YKARLDANKLKFNSFYPTLSPSQLYFTSLE 316 Query: 397 GNYELEKSGGDVV-DQVVRPTGLLDPIIEVRPVATQ-VDDLLSEIRQRAAINERVLV 451 LE+ ++ + +++ I V + + D L E+ +A +++++ Sbjct: 317 AIELLEQENNILISYENSEQASIVENIAAASFVEKKTIFDKLFEVI-KANSRKKIII 372 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 13/192 (6%) Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAA 444 + +SATP L+ S + + + T L+ + EVR D ++ + Sbjct: 729 THVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRL-EVRTSVMPFDPVIIRDALLHEHF 787 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVG 502 + ED+ + L++ + Y H + + EI+ + G+FD+L+ Sbjct: 788 RGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDILIS 847 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILY---GDKIT 558 ++ G+D+ + + + I AD G + L Q GR R + G A L K+T Sbjct: 848 TTIIESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGRGKMRGYAYLTLPSHKKMT 903 Query: 559 PSMAKAIGETER 570 P + + + Sbjct: 904 PHSLRRLEIIQN 915 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 57/311 (18%), Positives = 122/311 (39%), Gaps = 21/311 (6%) Query: 44 GKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVP 103 + + ++P ++ N+ A+ LY E+K V Y+ Sbjct: 31 QEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHLDENANVVYY-------------N 77 Query: 104 SSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLT 162 ++ + +E ++ R+ A ++ D+ + +++++ L ++ ++++ Sbjct: 78 HEESLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASIINIK 137 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 G + + R L L Y R + T+ +RG V D+F + + LR+E FD EV+ Sbjct: 138 TGDEWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQ-PLRIEFFDVEVD 196 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 L FD + +S + TI T + I + + ++ L + ++ + Sbjct: 197 SLRYFDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIH-EMEQ 255 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP-PTLFDYLPADGLLVVDESH 341 ++ L Q QFD+ + L + S +L P + L + L +SH Sbjct: 256 KRELLQMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIERTLKQNAL----DSH 311 Query: 342 VTIPQIGGMYR 352 I + M + Sbjct: 312 TFIEEQYEMNQ 322 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 21/231 (9%) Query: 378 KFEEFEALAPQTIYVSATPGNYELEKS--GGDVVDQVVRPTGLLDPIIEVRPVATQ--VD 433 + +EF+ + +SATP L+ S G + Q+ P P++ Q ++ Sbjct: 735 RIKEFKVSVD-VLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLPVMTYIIEKNQKTIN 793 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRD 491 D++S + + +V + + H E V +H ++ E +++ Sbjct: 794 DIIS---KELNRDGQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQMERHEIEDVMIR 850 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 E +VLV ++ G+D+P + + + +A + G + L Q GR R+ + Sbjct: 851 FISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQ----LYQIKGRVGRSDR---L 903 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 Y + P+ + + E ++R + K + G G + D+ G Sbjct: 904 AYAYFVVPN-KRGLTELAQKRLQAIKEFTQLG---SGYKIAMRDLTIRGAG 950 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 6/98 (6%) Query: 442 RAAINERVLVTTL-----TKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 +A ++ + +V +++ A L E L + + L+ + E+ EII+ ++ G+ Sbjct: 638 KAFVDHKQVVFLCPTTILSQQHARTLKERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGK 697 Query: 497 FDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 D+LVG + +L + ++ L+ I + + G ER Sbjct: 698 VDILVGTHRVLSRDVKFKDLGLLIIDEEQRFGVEHKER 735 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 66/506 (13%), Positives = 163/506 (32%), Gaps = 58/506 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 ++ + ++E+ + + + GK + + + + + K Sbjct: 5 FEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQK------- 57 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 + E+ + + + + + + + ++ E R + E Sbjct: 58 ---------SKSEWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIFEEG 108 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 V++ S + + L L + L L Y R ++G F Sbjct: 109 FDVLILSPQNLLEKY--SDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +G ++DI+P S +R+E F + ++ + FD T + + IY + + Sbjct: 167 QKGGIVDIYPIFS-KYPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSID 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 +++I + + L + + E+ ++ L Sbjct: 226 -FSDGIKKIVADFKKLQNKLKGDARKNLEESFKDVIDGAELKIDRL-------------- 270 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 + ++FD D +++DE + + L+E G+ L Sbjct: 271 YPYYYQNFRSIFDIF-GDCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLEKGYVLTKMAGC 329 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 ++ E L+ I L+ + + V+ + + E+ Q + Sbjct: 330 YFKVYDILEKLSSSII----------LQTFAQSIKEIQVKDIFSFNNLREIPSYNGQKEL 379 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ +I+ + + V ++ EDL LE+ R+ + +D +R + R Sbjct: 380 LIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKS--RIEFNKADEVLTDRQGVYLLPRS 437 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAI 520 E +G+++ + V + Sbjct: 438 VE-----------KGIEIQNLKWVCL 452 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 30/262 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSE-IRQRA 443 + ++ATP L + + D + + DP + PV T V + ++ E I + Sbjct: 756 VLTLTATPIPRTLNMALLGIRDLSI----IEDPPEDRFPVQTFVMEYNEKVIKEAILKEV 811 Query: 444 AINERVLVTTLTKRMAEDLTEYLE---EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + +V + E++ L+ ++ Y H +D + E++ D G++DVL Sbjct: 812 SRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQMDERQLEEVLIDFINGKYDVL 871 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+DMP V+ + + DAD+ G + L Q GR R+ N A Y T Sbjct: 872 VCTTIIESGVDMPNVNTLIVEDADRLGLAQ----LYQLRGRVGRS-NKLAYAYF---TFR 923 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K + E +R K E G G + D+ G GK + Sbjct: 924 KDKVLSEEAAKRLSAIKEFTELG---SGFKIAMRDLEIRGAGSI------VGKLQHG-HI 973 Query: 621 DNVPMDMSPKALQQKIHELEGL 642 + V DM + L ++I L+G Sbjct: 974 NAVGYDMYIRLLSEEIRRLKGE 995 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 63/339 (18%), Positives = 136/339 (40%), Gaps = 55/339 (16%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + I L + +E ++G + K+ I ++ + ++++PN+ +A + YG Sbjct: 14 QIITELVKRIEKN-KELNIIGSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFN 72 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRD 135 N + YY P +P K E +LS ++ Sbjct: 73 SIGNRNIL--------YYPPSKNLPYGSINKSK------ETEYSQLSVISKLINNDKEEK 118 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 +++ + ++ L +++ + ++ L G+ I+ + + +L L Y + + Q G++ Sbjct: 119 NIIITTERSLQPHLIKKNIFKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWS 178 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 RGE+IDI+P ++ + +R+E FD ++++ +DP+T + + +I + I + RE Sbjct: 179 RRGEIIDIYPVNNE-LPIRIEFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIRE 237 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ LL + + + +T + D Y IE Y Sbjct: 238 KLE----------------LLSDEGVFNSEEITTKNNLDR-------YLGIIEEY----- 269 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 P L +Y+ D ++V+DE Y Sbjct: 270 -------PSNLINYINEDSIIVIDEIDDCTKFANNWYIE 301 Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 13/163 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S + + T I+ +D + + I Q Sbjct: 765 VLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGG 824 Query: 448 RVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 + + L + + LT + V H ++ ++ + GE D+++ Sbjct: 825 Q-IFYVLPRISDIDQAVNKLTNMFNDLKFIVA--HGQMNEIDLENAMIAFNNGEVDLMIC 881 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ GLD+P+V+ + I D+ K G + L Q GR R+ Sbjct: 882 TTIIESGLDIPKVNTIIIEDSHKFGLSQ----LYQLRGRVGRS 920 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 58/274 (21%), Positives = 114/274 (41%), Gaps = 25/274 (9%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 + G S K A + A P +++ P++ + +++ F + + YF Sbjct: 61 PIMISGAGDSQKALLTA-MAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDLHLYYF---- 115 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPD 152 P + K + R+ ++L+ R V+A+V A + P Sbjct: 116 ---------PLVEETGFKVTFSGTERLRDRMRGLASLLDGRRSAVIATVVEAAQKIISPS 166 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 L+ ++ + +G +I++ ++ +L +L Y R DQ + G F VRG+++DIF A ++ Sbjct: 167 GILENLMTIHMGEVIEREILVGKLVKLGYERVDQVERCGHFSVRGDIVDIF-AINESHPF 225 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 RVE FD+EV+ + +F+ T + + +I P + I L + R Sbjct: 226 RVEFFDDEVDGIRVFNEDTQRSIDIRDDISILPAVI-------RGECSSSILSYLNSGRI 278 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 E + EE L + + E + +G+ Sbjct: 279 FYDEPQRCEEE--LKKYFHEEAENKEKAFDWAGL 310 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 92/268 (34%), Gaps = 21/268 (7%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINERV 449 +SATP L S V D V T ++ T+ DD + + I A + Sbjct: 734 LSATPIPRTLHMSLTGVRDMV-AMTQPPANRHAIQTYVTEYDDTIVKDAILHEKARGGQT 792 Query: 450 LVTTLTKRMAEDLTEYLEE---HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 + +L + + + +D +I+ D ++DVL+ ++ Sbjct: 793 YFIYNRIESIRAMEAHLRDILPSDVTIAVAYGQMDGRTLEKIMVDFFEKKYDVLLCTTII 852 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D P + + + DADK G + + Q GR R+ +A + K + Sbjct: 853 ENGVDQPNANTMLVYDADKLGLSQ----IYQMRGRVGRSEKIARAWFFY-----RQGKVL 903 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G G + D+ G N+ + G N+ Sbjct: 904 SEAAEKRLNTIREFTELG---SGFKIAMRDLEIRGAGNLLGAEQHGNIAGVGFATYCNML 960 Query: 625 MDMSPKALQQKIHE-LEGLMMQHAQNLE 651 D + ++ ++ + M L Sbjct: 961 EDTVSRLRAERENKPVPKKMPDTTVELR 988 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 147/455 (32%), Gaps = 53/455 (11%) Query: 40 VTGSGKTFTIANVIADL------QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 VTG+ +A ++ P +V+ + A L ++ F P Sbjct: 27 VTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFFDPSRQSH------ 80 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGLGDP- 151 +P+ D N + R+ + + ++SV A+ P Sbjct: 81 -------ILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFISSVDALMQKTLPV 133 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + G + + + L Y +G F VRG ++DI+P +++ Sbjct: 134 KILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGGIVDIYPP-TENQP 191 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 +R++LF ++VE L F + I F + P + E + ++ ++ L R+ Sbjct: 192 VRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHERLLQRVRASLEGRK 251 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E + L L GIE + G T D+ P Sbjct: 252 VDKAEAEETLRSLVLKNA-------------FPGIEFLLPYFYG-----ELATPADHFPG 293 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP---- 387 L + M+ +A T + R P D + FEALA Sbjct: 294 ALNLWFLDPVEISRCADEMWAELKADHRTSDAHVIR-PELED----IYVNFEALAYPLNS 348 Query: 388 QTIYVSATP--GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +Y S+ + S + + + L + + +++ + Sbjct: 349 RQVYFSSLEYFDEENSDDSRVEYRTAMTQDFTNLA-LANAVGTEQWLQAATNKLHRWRDE 407 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 R+ V+T + + L+ E+ + SD Sbjct: 408 GYRIFVSTKNQSHIDRLSLVFEKLELKAVRTSSDE 442 Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 96/261 (36%), Gaps = 23/261 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD--DLLSEIRQRAAIN 446 T+ +SATP L + + D + T +D + R T+ D + I + Sbjct: 785 TLTLSATPIPRTLNMALVGIRDLSLINTAPVDRL-PTRTFVTKFDPETIRKAITAEISRG 843 Query: 447 ERVLVTTLTKRM----AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V +++ + + E RV H ++ E + + E DVLV Sbjct: 844 GQVYFIHNRIESIYGLVDEIRQIVPEARIRVA--HGQMEEHELEKAMLAFFHHEIDVLVC 901 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + I A G + L Q GR R+ +A Y M Sbjct: 902 TAIVESGMDVPRANTMFIDTAHLFGLSQ----LYQLRGRVGRS-KTRAYCYL------MM 950 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + ++ ++++ K +E+ G+ D+ G + + + E Sbjct: 951 PRNHKLDKEQQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYEM-- 1008 Query: 623 VPMDMSPKALQQKIHELEGLM 643 MD+ +AL + E M Sbjct: 1009 -YMDLLNEALAEAKGESVEDM 1028 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 110/574 (19%), Positives = 197/574 (34%), Gaps = 111/574 (19%) Query: 48 TIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 TI + +L++P +++ P + A L ++ F Y PS D Sbjct: 4 TIDFLKLNLEKPVLIVVPTEYEAQLLSQKLNAF--------------------YFPSHDV 43 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMI 166 F ++ +V+ + R+ +L +V+V ++ AI P + L G + Sbjct: 44 FPFEEVAVSFEVRCRRIEILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEV 103 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 + L Y R G F VRG+VID F D+ +RVELFD+ +E + Sbjct: 104 FHNPE--ETMLNLGYDRTYIVRTGGEFSVRGDVIDFFGPLYDN-PVRVELFDQTIEAIRC 160 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI----------------------K 264 FD T + V + + P Y+ ++ + Sbjct: 161 FDASTQRSVFKVEEAFLLPVREYLCNEHLFDTVPAKLGSNSTILDYSDFEIFVAEFDRCQ 220 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQ--------------------------------- 291 EE A R + E + + + + +Q Sbjct: 221 EEFAKREREAREMLEKKQIEDYVENSQISFSSLVKRIEFFKPLEIDLNTLKILPQTSQKS 280 Query: 292 ------FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHV 342 FD E + E + + G P +Y D + V + Sbjct: 281 RDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRYEDSTVYVPVERI 340 Query: 343 -TIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP--QTIYVSATPGNY 399 I + G R R + + R+ N K EE + Q I + PG+ Sbjct: 341 HKIHKYIGDTRNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSLPGDP 400 Query: 400 ELEKSGGDVV------DQVVRPTGLLDPIIEVRPV---------ATQVDDLLSEIRQRAA 444 ELEK + DQ+ +L + +P+ + + L + Sbjct: 401 ELEKRFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAFKCVV 460 Query: 445 INERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 ++V V T ++ + T+ + G +VR L I T+ + EI+ L G+ DV+ Sbjct: 461 SGKQVAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGKIDVI 520 Query: 501 VGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 +G + LL+ + ++ LV I + G + E+ Sbjct: 521 IGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKEK 554 Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 14/197 (7%) Query: 380 EEFEALAPQT--IYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDD 434 E+F+ L + +SATP L + + D V P G L I V + Q+ Sbjct: 553 EKFKQLRTNVNVLSLSATPIPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAKYSNQLVR 612 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDL 492 + + +V+ +D+ + L+ + + H + + E +R Sbjct: 613 --GAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTEAVRSF 670 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + DV++ ++L G+D+P + + + D+ + G + L Q GR R+ +A Sbjct: 671 YEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQ----LYQLRGRVGRSTK-RAFA 725 Query: 553 YGDKITPSMAKAIGETE 569 Y + KA+ + Sbjct: 726 YFLHDSEISEKALQRLQ 742 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 28/302 (9%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 E I L++ L+ + + + K A + ++L + A+L+ ++ Sbjct: 12 ERILALQKALQHTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEARLFHDLS 71 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDVV 137 F P PS +T ++ + I R K + + Sbjct: 72 FF--------------TNCPTVDFPSWETLPSENVPPSPDIVGERYQLLKKINSSSEPHI 117 Query: 138 VVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 ++ S+ + + L P + K+ L L ++++L + Y R A +G F VR Sbjct: 118 ILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASDKGEFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP S D R+E + +++E + ++DP+ V + + I P + Sbjct: 178 GGIIDVFPVSSPD-PYRLEFWGDDLESIRIYDPIGQISVRAVEQIDIAPGLELELLNQSN 236 Query: 257 VQA--MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 QA ++ + E LL L R + + + S IE + L+ Sbjct: 237 EQASFLDYLGPETLIIFDDLLA---------LEDRYASLISLGANNKFFSSIEEFLHLLT 287 Query: 315 GR 316 Sbjct: 288 PY 289 Score = 71.0 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 102/281 (36%), Gaps = 26/281 (9%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 +SATP L S D V T D + + D ++ + + + + + Sbjct: 736 LSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPSDQIIQNALLRELSRDGQAF 795 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V ++ ++ + R L H + E + G+ D+LV ++ Sbjct: 796 VIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEIDATFHAFKSGQADILVATTIVEN 855 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + I AD G +L Q GR R Y + P++ + + E Sbjct: 856 GVDIPNANTILIDRADHFGLA----ALYQLRGRVGRWNRR---AYAYFLVPNL-RVMPEL 907 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDM 627 R+R + E G+ + D+ G +I + G ++ + Sbjct: 908 TRKRLQALS---EASGYGSGMKVAMRDLEIRGAGDILGLEQSGHV--------SSIGFHL 956 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQLHQL 665 K L++ I L+G + + E A R D ++++ Sbjct: 957 YCKMLKRTIQTLQGKLPSIVTETKIELAIDARLPEDYVNEV 997 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 97/530 (18%), Positives = 168/530 (31%), Gaps = 91/530 (17%) Query: 53 IADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 A+ P ++ + A +L + + P + F PS +T + Sbjct: 70 AAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANF-------------PSWETLPHE 116 Query: 112 DASVNEHIEQMRLSATKAMLERRDV-----VVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S RLS + + VVVA V ++ L + L G Sbjct: 117 RLSPRSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQD 176 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 D + ++ LA Y+R D +RG F VRG +ID+FP ++D +R E F +E++ + Sbjct: 177 YDFQQLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRW 235 Query: 227 FDPLTGQIVSTIP--RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F + ++T + P + + ++KE+L R++L Sbjct: 236 FAVADQRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGGREML---------- 285 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 E + Y G+E+ + L + + LPA + VV E Sbjct: 286 ----------ERIAGGQYVEGMESLAPLL-----ADEMLQVMSLLPAGSMTVVLEPEKVR 330 Query: 345 PQIGGM---YRGDRARKETLVEYGFRLPSALD---------NRPLKFEEFEALAPQTIYV 392 + + G P L+ R L F +A Sbjct: 331 ARAHDLVATNEEFLMAAWDSASGGSEAPLDLNAALDTDDDAARTLSSGSFHTIAEVRDLA 390 Query: 393 --------SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV--------ATQVDDLL 436 S T N + D L D + V + V +L Sbjct: 391 LERSVGWWSVTGLNVNAVTTSQMDADTSDEEVHLADTDADTLTVTAREPTRFSGDVPAVL 450 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S + +RA + R+++ T + L+E L S D + + Sbjct: 451 SFLGERAREDWRIVLVTDGPGPLQRLSELLHGADVPAARYDSVDDAPQPGLVE------- 503 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFL-----RSERSLIQTIGR 541 + G + + + +AD G R+ER L Q R Sbjct: 504 ----LTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERKLPQRRKR 549 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 11/149 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP LE S + + P + V P + + + IR+ Sbjct: 844 VLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQ--VSAAIRRELMR 901 Query: 446 NERVLV----TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + + A++L E + E R+ H + +II D +FDVLV Sbjct: 902 EGQVFFIHNRVSTIEAQAKELAELVPEA--RIAVAHGQMTESRLEQIIVDFWEKKFDVLV 959 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLR 530 ++ GLD+ + + + AD+ G + Sbjct: 960 CTTIVETGLDIANANTLIVDHADRYGLSQ 988 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 77/457 (16%), Positives = 167/457 (36%), Gaps = 55/457 (12%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 TL V + F +A IA L + + ++ + L + P+ V F Sbjct: 16 KKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF--- 71 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE----RRDVVVVASVSAIY-G 147 P+ D S + ++ RLS ++ + ++V+ +VSA+ Sbjct: 72 ----------PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 + L + ID ++ +L + R + ++ G + VRG ++D++ + Sbjct: 122 SVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEP-T 180 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +R++ F ++ L LFD T + + I F I + + + I + E Sbjct: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + +++ G+E++ F + T+F Sbjct: 241 GTTTQE-----------------DPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFP 278 Query: 328 YLPADGLL---VVDESHVTIPQIGGMYRGDRARKETLVEYGFRL-PSALDNRPLKFEEFE 383 YL ++ +V E+ Q+ Y R + + + P A + L +++F+ Sbjct: 279 YLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFD 338 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ--------VDDL 435 AL QT + + +++ + V + G V+ + +Q D Sbjct: 339 ALI-QTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKF 397 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 LS + Q+A + +++ ++ + L +E HG + Sbjct: 398 LSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFK 434 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 12/197 (6%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL--SEIRQRAAI 445 + +SATP L+ + V + + ++ I R + D L+ + + Sbjct: 775 HVLTLSATPIPRTLQLAITGVRELSLISMPPINR-IACRTSISIFDPLVVRETLMREYYR 833 Query: 446 NERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + E +L+ ++ H + + + G++DVL+ Sbjct: 834 GGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLST 893 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 +++ GLD+P+ + + + AD G + L Q GR R+ K + + P Sbjct: 894 SIVESGLDLPKANTMIVQRADMFGLAQ----LYQLRGRVGRS---KIASFALFLLPENRP 946 Query: 564 AIGETERRREKQQKYNE 580 ++R Q N Sbjct: 947 LTAAAQKRLRILQSLNT 963 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 84/505 (16%), Positives = 160/505 (31%), Gaps = 61/505 (12%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS +A I + +V+AP A L E+ F + Sbjct: 25 LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFS------------ETGLSI 72 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMM 158 +P + +S + + R +L+ DV+V+ + S ++ L + K Sbjct: 73 ELLPDLEILPYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L+VG + + I +L Y R + G F +RG +ID+F +R++ D Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLY-TNPIRIDFDD 191 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E+++ + LFD + ++TI TI P HY ++ Sbjct: 192 EKIDLIKLFDVDSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGN-------- 243 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL-PADGLLVV 337 Q + G+ NY E +++DY P L V Sbjct: 244 ---------QLEWPLYNFIETYAESHGVYNYLPLF-----FESMSSIWDYCKPGTELFCV 289 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I + ++ L + N F A P Sbjct: 290 GDIKTPIKDYQKLINQRFNSQDNL---------SQPNLKPSELFFSATEQINKINEMHPI 340 Query: 398 NYELEKSGGDVVDQVVR-PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N + +K + T L+P+ + +D ++ + + + ++L++ +K Sbjct: 341 NLQHQKCWKSHDHNSINFDTRPLEPLTA--FKTSSMDKIIHGLLETSTN--KILLSAGSK 396 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L E R R+ + V V + E + Sbjct: 397 NRIAFIENQLREFSIASR----------RVSNWNEFLERRAGVFVTEKSISESFITAKSG 446 Query: 517 LVAILDADKEGFLRSERSLIQTIGR 541 + I + + G S R G+ Sbjct: 447 IAVIGEIELFGRRSSTRKYRSPAGK 471 Score = 70.6 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 12/189 (6%) Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINE 447 + ++ATP L + G++ D + T + I V+ +Q D L ++ + Sbjct: 758 LALTATPIPRTLNMAIGELKDISMIATP-PEGRIPVKTYISQWDKSLIHEACQREISRGG 816 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +VL E++ E + + + H + ++ EFD+L+ ++ Sbjct: 817 QVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSLERVMMKFYNNEFDILLATSI 876 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I AD+ G + L Q GR R+ Y + PS Sbjct: 877 IESGLDIPNANTIIINRADRFGLAQ----LHQLRGRVGRSERQS---YAYLMIPSKHTLT 929 Query: 566 GETERRREK 574 E +R E Sbjct: 930 NEGRQRLEA 938 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 104/508 (20%), Positives = 191/508 (37%), Gaps = 88/508 (17%) Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMM 158 + PS D +D ++ +++ R+ +L+ ++ +V ++ A+ P+ + Sbjct: 19 LFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTTLKALTEKIFSPESLKERT 78 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 + + R E+ Y R G F +RG ++DIF D +R+ELF Sbjct: 79 IEVRR--SASFYLSPERFVEMGYERTFTVQMPGEFSIRGGILDIFSPGYD-FPVRIELFG 135 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYP-------------KTHYVTPRERIVQAMEEIKE 265 E VE + FD T + + I P E + +A+ E ++ Sbjct: 136 EVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVRFTCENLEKALTEYRK 195 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS-GIENYSRFLSGRGPGEPPP- 323 + +L E L ++ + +R ++E + S GIE S L E Sbjct: 196 IRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEERSLPLVDIDEIEEGEL 255 Query: 324 --------TLFDYL--------PADGLLVVDESHVT---IPQIGGMYR--GDRAR-KETL 361 +F+ + D L + E V + +I ++R GD ++ K Sbjct: 256 VVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDAVLYVPVEKIDRVHRYIGDPSQVKLDR 315 Query: 362 VEYGF---RLPSALDNRPLKFEEFEAL--APQTIYVSATPGNYELEKSGGDVVDQVVRPT 416 + G L ++ + E L + + + PG+ ELE+ + Sbjct: 316 LNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEKFAETF------- 368 Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINE----------------------------R 448 P IE ++++L+++ ++ Sbjct: 369 ----PYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVA 424 Query: 449 VLV--TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-L 505 VLV T L ++ E+ E LE G RV L S ER EI+ L+ GE DV++G + L Sbjct: 425 VLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHAL 484 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSER 533 L E ++ ++ LV I + K G + E+ Sbjct: 485 LNERVEFSDLGLVIIDEEQKFGVEQKEK 512 Score = 59.8 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 22/218 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVD-QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L + + D V+ + V + + + + Sbjct: 522 VLSLSATPIPRTLHMALSGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGG 581 Query: 448 RVLVTTLTKRMAEDLTEYLEEH-----GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V+ E+L E LE R+ H + +++ + G DVL+ Sbjct: 582 QVIYV---HNRVEELPEVLENLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLC 638 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + + DA + G + L Q GR R+ +A Y Sbjct: 639 TTIIENGVDIPNANTLIVDDAHRYGLAQ----LYQLRGRVGRSDR-RAFAYFLYPKGVPK 693 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A+ ++ + + H GL + D+ G Sbjct: 694 SAL--------ERLRVLKAHTGPGSGLQIAMKDMEMRG 723 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 207/665 (31%), Gaps = 110/665 (16%) Query: 17 QPEAIRRLEEGL--EDGLAHQTLLGVTGSGKTFT--IANVIADLQRPTMVLAPNKTLAAQ 72 Q + + L + L+G+ ++ +++ + + ++A N + Sbjct: 8 QEKLLETLSPFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLL-SDKTLWIIAENIEKSHN 66 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 + F S++ ++P + + S + I R+ A + + Sbjct: 67 RMSSLLAFQ---------SFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQ 117 Query: 133 RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 + VVV + A+ P L ++ L+ G I++ A+ L L + R Q G Sbjct: 118 GKVDVVVTTWPAVVRKTLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPG 177 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F VRG ++D++ D +R+E D+ + + FD + ++ + R I P + ++ Sbjct: 178 EFAVRGAILDLYSPAHQD-PVRLEWDDDILASIRSFDINNQKSLAKLSRVEILPGSEWIP 236 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 P + A L +N G+E + Sbjct: 237 PTGNVKNG---------ALSDWLKDN--------------------PVTSLVPGVERFIP 267 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR-LPS 370 + E + DY +L+++E + + R E L + LPS Sbjct: 268 SIY-----EDAQSPLDY-GRKPVLLIEEPSIYRQKKKEWEERIREGWEALTDSDKVLLPS 321 Query: 371 ALDNRPLKFEEFEALAPQ---TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + E L + TIY+S +L P Sbjct: 322 PEKAFLFEEAESPQLIEKLYPTIYLSDFSDQEDL-------------------PFSSPVE 362 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q++D +E +VL T+ + E L G D ER Sbjct: 363 SLLQIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPFFPASGLQDIEEREP 422 Query: 488 IIRDLRLGEFDVLVGINL--LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + R +V L + +G +P +++ + ++ F + I Sbjct: 423 LNRS--------VVWTILGDVEKGFYIPSDNILVL--SENFLFRKRPEPRIHR------- 465 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 A I + E E Q HGI K+++ G+ Sbjct: 466 ----AFATATSIYRKDRPPLNEGEPVVHLQ------HGIGLYRGLKEIMVGSIPGEFFVV 515 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ D + P+ + + G + ++R ++ ++ Sbjct: 516 EYRDLEKLYVPVDHADLLQPYRGPEGSTPTLDRIGGQTWNRTRQ-------KVRKEIEKI 568 Query: 666 RELFI 670 + + Sbjct: 569 SQDLV 573 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 94/255 (36%), Gaps = 25/255 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDDLLSEIRQR 442 T+ + P ++ SG + ++ P PI + + +D L+ Q Sbjct: 757 TLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQV 816 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 I+ RV RM L + E + H ++ E++ + +LV Sbjct: 817 FFIHNRV---QTISRMVHYLAKLFPE--VPIGMAHGQMEDSRMEEVMEKFIQRHYRILVS 871 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ GLD+P + + + AD G L Q GR R+ Y + PS + Sbjct: 872 TAIVESGLDIPAANTIIVNRADMFGIS----ELYQIRGRVGRSGQQ---AYAYFLIPSES 924 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + +T R+R K + N G G + D+ G + + ++ Sbjct: 925 -GLTDTARKRLKTLQDNTSLG---SGYQIAMRDMEIRGAGSLLGHQQTGHIALVGLD--- 977 Query: 623 VPMDMSPKALQQKIH 637 + ++M +A+Q +I Sbjct: 978 LYLEMVEEAIQSRIE 992 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 91/538 (16%), Positives = 168/538 (31%), Gaps = 85/538 (15%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 +L+ L + + +++ + +++ A L E+++ Sbjct: 54 KLQGVLASVGEPRLHISAIDEARSWVARAIAEKSV--VVIVTATSREAQDLTAELRDMMG 111 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 + + P+ +T + S RL + + D+ Sbjct: 112 DAVAMF--------------PAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPI 157 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +VVA + L + + L D I RLAE+ Y D +RG F V Sbjct: 158 RIVVAPARSFIQPIMKGLGEREPIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAV 215 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPR 253 RG V+DIFP+ ++ + +R EL+ +E+ L F + + +YP Sbjct: 216 RGGVVDIFPSTAE-LPVRAELWGDEISDLRAFSVGDQRTIENFDPGAVPVYPCR------ 268 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 EL V K+ L ++E G+E+ L Sbjct: 269 ------------ELRIDDAVRARAEKMARTHASNATLADALTKISEGVAVEGMESLIPVL 316 Query: 314 SGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P + P+ ++V + + A + V+ G+ + Sbjct: 317 FDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDL----IATGKEFVKAGWEAAAMG 372 Query: 373 DNRPLKFEEFEAL--------APQTIYVSA-----TPGNYELEK----SGGDVVDQVVRP 415 P+ Q+ Y S T ++ L G + Sbjct: 373 AESPIDTAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASS 432 Query: 416 TGLLDPIIEVRP--VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 T LD +P V+ +SE+ A R++ T LT A+ ++ E G V Sbjct: 433 TLELDFSTGPQPKGKPGDVEKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGV 492 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS----LVAILDADKEG 527 + G+ V+ +L GL +P V L+ + + D G Sbjct: 493 ---------TPDADPQNPSAPGKATVIRA--VLHGGLVIPHVDDARPLLVVAETDFTG 539 Score = 64.0 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 18/216 (8%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINERVL 450 +SATP LE S + D T D + V Q D + + IR+ + +V Sbjct: 849 MSATPIPRTLEMSMAGIRDMSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRELLRDGQVF 908 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 R E + +++ E R + H ++ + + E+DVLV ++ Sbjct: 909 YVHNRVRSIEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVET 968 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA-ILYGDKITPSMAKAIG 566 GLD+ + + + +A G + L Q GR R+ G A LY T + Sbjct: 969 GLDISNANTLIVENAHHMGLAQ----LHQLRGRVGRSRERGYAYFLYPPSQT------LT 1018 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ET R N + G G+ + D+ G Sbjct: 1019 ETSYDRLSTIAQNNDLG---AGMAVAMKDLEMRGAG 1051 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 101/516 (19%), Positives = 177/516 (34%), Gaps = 67/516 (12%) Query: 49 IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDT 107 +A R +++A ++ + F PE + + VS + P +P Sbjct: 52 LAAEAFTQGRTVVLVARDREEYNSARALLTLFTPELSLADKSVSEPQWNSPCLTLPPLSQ 111 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMI 166 + ++ + RL+A + + R +V SV S + D + L L G Sbjct: 112 WQDRAS------WSARLAALYGLAQGRPRCIVCSVESLLLRHIPLDFFAARNLDLRKGSD 165 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +L + E Y R + G RG+++DIFP +R+E F + ++ + + Sbjct: 166 YAPELLLDQAVEWGYERVPMVTRPGEMARRGDILDIFPTGHVK-PVRLEFFGDTLDEMRV 224 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD + + + + P + + + A E R + ++ E Sbjct: 225 FDAESQRSLQGCDELVLLPASPLALDAKSLAAARE--------RCDRMFAEGRISE---- 272 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF-DYLPADGLLVVDESHVTIP 345 NE + G P+LF D+LP D L ++ Sbjct: 273 -----------NECYSFKKSLDGGGLGLLPGSVLASPSLFEDWLPKDSLWLL---PGESD 318 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY--VSATPGNYELEK 403 + G KE L LP L + AP + V A P +E+ Sbjct: 319 SADALRDGRLNLKERLEAADAPLPQP---ASLALRKSSQPAPWNTFQRVYAEPLVMGVEE 375 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDD----LLSEIRQRAAINER-VLVTTLTKRM 458 G D+ + RP L I++ P+ D L + +++ + + VL + + Sbjct: 376 RGLDLPE---RP---LHSFIDLFPLPGAQDRPWQHLAAGLKEWKSSRRQIVLSFSSGRSR 429 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM------ 512 A+ L L E V L + ++ R G LV ++L G D+ Sbjct: 430 AKFL--KLAEQDGIVPALRYAPEQRGLFALVSPFRSGAE--LVWDDVLVLGEDILYPKAE 485 Query: 513 --PEVSLVAILDADKEGFLRSERSLIQT---IGRAA 543 P VS D L+ L+ IGR A Sbjct: 486 KTPRVSSRVFKGLDSFDDLKPGDLLVHRDYGIGRFA 521 Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 10/186 (5%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L+ S + + + T D V + D++L ++ +R E Sbjct: 778 VLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREG 837 Query: 449 VLVTTLTKRMA-EDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + E + EY+ R H + E + + GE DVLV ++ Sbjct: 838 QVFWVYNRVQGLERVAEYVRGLVPDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSI 897 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD P + + + A G + L Q GR R+ Y + P + Sbjct: 898 VESGLDFPRANTLVVDQAQMFGLGQ----LYQLRGRVGRSDRQ---AYAFFVVPDAERLT 950 Query: 566 GETERR 571 E R Sbjct: 951 AVAEER 956 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 18/224 (8%) Query: 40 VTGSGKTFTIANVIADLQ-RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 V+ S + F +A + RP +V+A + A L +M+ + V ++ Sbjct: 27 VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFY--------- 77 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA---IYGLGDPDLYL 155 PS E + H+ +R++A A++ R V + + Sbjct: 78 ----PSRGVAYESHLAPPAHLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNPALR 133 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 L VG ++D L Y R DQ RG F +RG ++D++PA ++D A+RV+ Sbjct: 134 PHGFTLRVGELMDLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPA-TEDRAVRVD 192 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 LF +E+E L F T + + + P + + Sbjct: 193 LFGDEIESLRWFSTFTQRSLGDAEEVEVSPAAELAPEHRELAEI 236 Score = 67.5 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 86/239 (35%), Gaps = 23/239 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE----- 438 L I +SATP L+ S + D V T P RPV T V + + Sbjct: 715 KLKVDVIAMSATPIPRTLQMSIAGIRDISVIET----PPEGRRPVKTYVGEYDEQLVKSA 770 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGE 496 I + + + ++ E L R+ H +D E + GE Sbjct: 771 IERERSRGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERMLRFLRGE 830 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 DVLV +++ G+D+P+ + + + AD G + L Q GR R+ + Y Sbjct: 831 ADVLVATSIIESGIDIPQANTLMVERADLFGLSQ----LYQIRGRVGRS---RERAYAYL 883 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKS 614 + PS + + +R Y E G + D+ G N+ + G + Sbjct: 884 LYPSASALTADAAQRLSALSDYTE----LGAGFKVAMRDLEIRGAGNLLGDEQSGHVAA 938 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/370 (14%), Positives = 123/370 (33%), Gaps = 61/370 (16%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + Q + ++R+ + L + + S + ++ + ++++ + Sbjct: 2 LYAKIEEILAQSKFMQRVLK-LPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 +A ++ ++ + Y+P + ++ S + I R+ Sbjct: 61 DIIAEDIWDDLCVLIGKENAH-------------YLPDYEILPYEERSPHYSIRATRMET 107 Query: 127 -TKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARN 184 + + + S A+ +L + +LHL GM + +L L ++ Y Sbjct: 108 FLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQ 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTI 243 Q + RG +IDIF +R+E + +E+ + +F T + + + TI Sbjct: 168 YQVSKVFQAAKRGGIIDIFSPPL-TNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTI 226 Query: 244 YPKTHYVTPR-ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P + + +I+ + G+ Sbjct: 227 LPARELSLSDVDSGSPIIAKIRNQ----------------------------------GF 252 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVVDESHVTIPQIGGMYRGDRAR--KE 359 GIENY L T DY D +LV + + + ++ KE Sbjct: 253 FEGIENYYALLCN-----ELQTFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKE 307 Query: 360 TLVEYGFRLP 369 ++ R+P Sbjct: 308 AKIQGQGRVP 317 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 8/168 (4%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 T+Y+SATP L + + + + T + + + + +++ + IR+ Sbjct: 733 TLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPVRTIITPRDMEVIKDAIRREIDRGG 792 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + E + L +VR++ H+ + + ++ D E+ VL+ + Sbjct: 793 QVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMPEQQLERVMADFWAKEYQVLISTTI 852 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 + G+D+P + + I +A+ G + L Q GR R+ +A Y Sbjct: 853 IENGIDIPNANTILIDNAETFGLAQ----LYQMRGRVGRSNR-RAYAY 895 >UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD Length = 1142 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 101/256 (39%), Gaps = 22/256 (8%) Query: 21 IRRLEEGLEDGLAHQTLL--GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +R + G L G GS F + ++ + P VL P++ AA L +++ Sbjct: 19 LRAWTAEAQRGDRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLE 78 Query: 79 EFF--PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + P+ A+ + + S IE R A + + E + Sbjct: 79 QLVGEPDEAILRVPATQKTPYDPDQIADSTPLIE------------RADALQRLAEGFEG 126 Query: 137 VVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 ++V SV A+ L P + L + G I A+ RL E ++ + + G F Sbjct: 127 ILVTSVPAVGELVPPPQAVQRETLTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFAR 186 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D+FP + +R++ F +EV+ L FDP T + VS + + P RE Sbjct: 187 RGGILDVFP-YAGTYPIRIDFFGDEVDGLREFDPQTQRSVSRLTTARLVPN----LEREE 241 Query: 256 IVQAMEEIKEELAARR 271 + + + L Sbjct: 242 AARGSIALFQYLPDEA 257 Score = 63.3 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 87/262 (33%), Gaps = 20/262 (7%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 EA+ T+ + P + G + + P P I D + I Sbjct: 723 EAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQP-INTEIHTFDEDVIRDAIVYE 781 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 + +V + ++ E + VR H + E +++ D + DVL Sbjct: 782 TSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVL 841 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V +++ GLD+ + + I + G L Q GR R+ + + PS Sbjct: 842 VSTSIIENGLDISNANTMII---NHAGEHFGLSELHQLRGRVGRSQRK---AFCHLLVPS 895 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + R + +++++ G + + D+ G + Sbjct: 896 VHGLTDDARERLKAVEQFSD----LGSGFDIAMRDLDIRGAGSLLGAEQSGF-------I 944 Query: 621 DNVPMDMSPKALQQKIHELEGL 642 ++V + K L Q + EL Sbjct: 945 EDVGYETYHKILDQAVKELREE 966 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 86/542 (15%), Positives = 178/542 (32%), Gaps = 89/542 (16%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPN 66 S + A++ L LE+G +L G++ S + F A + L P ++++ + Sbjct: 3 TSKLFAKISETPAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDS 61 Query: 67 KTLAAQLYGEMKEFFP-------ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ + + P+ + + + + Sbjct: 62 LKTQESFQQDVETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV 121 Query: 120 EQMRLSATKAMLERRDVV------VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAI 172 RL A+ + ++A+V+A+ P + + L G ++ + Sbjct: 122 ISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDL 181 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L E Y Q Q+G +RG ++D++P S +R+E F +E+E L FDP+T Sbjct: 182 IEWLEEQGYEPEAQVTQKGEIALRGGILDVYPMTS-PWPVRLEFFGDELESLRYFDPITQ 240 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 I T+ P + ++ + + L L E +R+ + T Sbjct: 241 ISREQIATVTLPPGGEFGILKQLAARDQQASLATLLDYLPT-GTLFILSEPERIEEHT-- 297 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 E YS + P P + D ++ E + Q+ + Sbjct: 298 --------------EQYSTQVPNEDPFHIPWS-------DFQELLSEKGMKSLQLSEIVM 336 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + ++ + A D RP +L ++ + Sbjct: 337 DGESEGMDVLSESEAV--AEDERPFGESTENSLPFSSL--------------------EA 374 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 RP G P E + Q + +++ + + V + Sbjct: 375 FRPLGARAP--EPQIAEAQRREFFAQLHRWSRQGYDVHLFCN------------------ 414 Query: 473 VRYLHSDIDTVERMEIIRDLRLGE-FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +D + E+ +D GE F + + + L G E +V + DA+ G + Sbjct: 415 -----NDGERQRFQEVWKDYGFGEDFGLKMHLGALGRGFLNEEAKVVVVTDAEIFGRYKV 469 Query: 532 ER 533 +R Sbjct: 470 QR 471 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 98/269 (36%), Gaps = 24/269 (8%) Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 KF++ L + +SATP L + D T D + VA + L+ Sbjct: 777 KFKQIRKLVD-VLTLSATPIPRTLYLALTGARDMSTIETPPQDRLPVETIVAQYDERLIR 835 Query: 438 EIRQRAAINERVLVTTLTKRMA-EDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRL 494 E QR + + + + + L R + H + + E++ Sbjct: 836 EAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMKPDDLEEVMTAFIN 895 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 GE DVL+ ++ GLD+P + + I AD+ G L Q GR R + Y Sbjct: 896 GEADVLLSTTIIESGLDIPNANTMIIDRADRFGLS----DLYQLRGRVGRYKHQ---AYA 948 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGK 613 + P A + + +R ++Y+ G + D+ G N+ + G Sbjct: 949 YLLLPRHAGLLADARKRISALKQYST----LGSGFKIAMRDLEIRGAGNMLGPEQSG--- 1001 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + V D+ + L+Q + L+G Sbjct: 1002 -----QITAVGFDLYCQLLKQSVAALKGE 1025 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 78/489 (15%), Positives = 153/489 (31%), Gaps = 73/489 (14%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 L+G + A +P +++ P+ A L G+++ ++ + E Sbjct: 56 PSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDLVGDLRSWYDGDPNEV----- 108 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD--------VVVVASVSAI 145 A + + +T + S R+ + + ++V V ++ Sbjct: 109 ------AQLMAWETLPHERLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSL 162 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 + L G I ++ L Y R D RG F VRG +ID+F Sbjct: 163 IQPVVAGIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVF-V 221 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTIYPKTHYVTPRERIVQAMEEIK 264 ++ +R+E F +E++ + F + I P +A I Sbjct: 222 PTEPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATPCRELQLTEGIRERAQSLI- 280 Query: 265 EELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPT 324 ++ L + + G+E+ + Sbjct: 281 -------------GQIPNADDLLESIANAIPQ-------EGMESLIP-----ALVDDLEP 315 Query: 325 LFDYLPADGLLVVDES---HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + LP D ++++ + + + A + G P+ FE Sbjct: 316 VSSMLPRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHVAASG-----HGAGAPISFEA 370 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--EVRPVATQVDDLLSEI 439 L + T N+EL K G VDQ + +D + ++ + +D L E+ Sbjct: 371 ANFLDLDEVVGQLTYSNHELWKVSGFTVDQSLPGHVQIDAVAPQDLHGSGEKAEDHLGEL 430 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ + V++T + L L E + +H D I + G D Sbjct: 431 IRK---DYAVVITAAAQGTLSRLKRMLNE----IGVVHFDT-------IRSQAQDGFIDH 476 Query: 500 LVGINLLRE 508 LL E Sbjct: 477 ASKTALLTE 485 Score = 53.6 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP LE + + + T D + + A + + + IR+ Sbjct: 795 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRRELLRGG 854 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E+ + L++ R H + + +IIRD + DVL+ + Sbjct: 855 QVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTI 914 Query: 506 LREGLDMPEVSLVAILDADKEGFLR 530 + GLD+ + + + AD+ G + Sbjct: 915 VETGLDISNANTLIVDRADRFGLSQ 939 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 139/400 (34%), Gaps = 33/400 (8%) Query: 22 RRLEEGLEDGL-AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L LED L G+ S +++ + + ++ + + + A Y ++ + Sbjct: 17 KGLAALLEDSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 + + +F S Y + +KDA+ E +R + + + VV Sbjct: 77 NGDEHILFFPSSYRRAVK---------YGQKDAAN----EILRTEVLSRLQKGDPLCVVT 123 Query: 141 SVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ ++ + L L VG +D I LA + D ++ G + VRG + Sbjct: 124 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 183 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-- 257 ID+F S+ R++ F +EV+ + F+ I P+ + + Sbjct: 184 IDVFSFASE-YPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADKSGVSFF 242 Query: 258 -----QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYSR 311 + + +K+ L R ++ + + L Q L E+MN EL G E R Sbjct: 243 EFIPRETVLAMKDFLWVRERIQVVREEALSPQALAAYEGEKTELMNLELKLIDGAEFTVR 302 Query: 312 FLSGR--GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L + G P P L + + + + G+ L Sbjct: 303 ALDFKRIEFGNKPT----GTPQATLAFDTTVQPIFHKNFDLVSTSFTDYQ---KRGYTLY 355 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 D+ + + +++ P N L + D V Sbjct: 356 ICTDSEKQAKRLKDIFEERGDHITFIPVNKTLHEGFTDNV 395 Score = 67.9 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 99/257 (38%), Gaps = 25/257 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 T+ ++ATP L+ S D V T + V T +D+++E I + N Sbjct: 709 TLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHTFNEDIITEAINFEMSRNG 768 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + +L ++ + R H ++ + +II D ++DVL+ + Sbjct: 769 QVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLATTI 828 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 + G+D+P + + I A G L Q GR R N L +T + Sbjct: 829 IESGIDIPNANTIIINQAQNFGLS----DLHQMRGRVGRSNKKAFCYLLAPPLT-----S 879 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 + +RR + + + G G++ + D+ G N+ + G ++ Sbjct: 880 LTPEAKRRLQAIENFSDLG---SGIHIAMQDLDIRGAGNMLGAEQSGF--------IADL 928 Query: 624 PMDMSPKALQQKIHELE 640 + K L + + EL+ Sbjct: 929 GYETYQKILAEAVKELK 945 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 39/294 (13%) Query: 46 TFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSS 105 + +A + A R T+ + P+ QL E+ F + +P+ Sbjct: 17 AWQLAQL-ATTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCL-----------WRMPAW 64 Query: 106 DTFIEKDASVNEHIEQMRLSATKAMLE---RRDVVVVASVSAIYGLGDPDLYLKMMLHLT 162 + S + I R + +L + +++ A + + + P++ + + Sbjct: 65 EVLPYDRVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAHVWQIK 124 Query: 163 VGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVE 222 G ++D A+ RLAE + D+ +G F RG + D++PA +++ LR+++F +++E Sbjct: 125 PGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-TEETPLRIDMFGDDIE 183 Query: 223 RLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE 282 + FDP + + ++ FT P + + E R L ++ Sbjct: 184 SIRRFDPESQRSGESLSAFTSVPVREVILD----QRGRECFAAAFRTRFPHLRKH----- 234 Query: 283 EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 L + GIE + L DYLP ++ Sbjct: 235 ---------PMLSSVQAGRPHPGIEALLPL-----AYDNTARLSDYLPDGAVIY 274 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE--IRQRAAINERV 449 ++ATP L ++ + + T + +R + + D ++ IR+ +V Sbjct: 723 LTATPIPRTLHQTMSGLRSVSIISTPPAERE-AIRTMVSSFDPHIAREAIRRELYRGGQV 781 Query: 450 LVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + E +T L E H + E + G +LV ++ Sbjct: 782 YYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTIIE 841 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 GLD+ + + + AD G + L Q GR R+ Y TP A+A+ Sbjct: 842 SGLDVANANTLIVERADLLGLSQ----LHQIRGRVGRSHRQ---AYAYLFTPD-ARAMTA 893 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMD 626 R R + EH G D+ G N+ + GR D + +D Sbjct: 894 DARERLQAIA---EHSELGAGFLLARQDMEIRGAGNLLGAEQSGR--------IDEIGLD 942 Query: 627 MSPKALQQKIHELEGLMMQHAQNLE 651 M L + E G M + Q L+ Sbjct: 943 MYLDMLSDAVAEARGKMPKPKQPLD 967 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 110/284 (38%), Gaps = 33/284 (11%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V + + F A ++ + ++ PN ++ E+ ++FP+ Sbjct: 35 VVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPDA--------------- 79 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 + P D + A + RL + + R VVV+ S + P ++ Sbjct: 80 LFFPEIDRAPVEGALPDPESIAERLGIVQRLTSVKGRQVVVLTRASLDDEVPSPAALKQL 139 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + L +D+ +L++LAE Y Q RG F VRG ++D+F + +R+ELF Sbjct: 140 EIRLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFH-HSLPVRIELF 198 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D+E++ L FD T V + T+ + +A +++E + R + Sbjct: 199 DDEIDSLREFDLDTQISVQHLDTVTL------LLGEAAAERASCKLQELVTERDITIDAE 252 Query: 278 NKLLEEQ-RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 Q R+ + + E G E+YS G GE Sbjct: 253 ASWFAAQVRIMEHS--------EGAATEGAEDYSTAFFDHGLGE 288 Score = 72.1 bits (175), Expect = 7e-11, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 104/272 (38%), Gaps = 30/272 (11%) Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----D 433 +F+E L + +SATP L S D T P + P T + + Sbjct: 665 RFKEMFKLVD-MLTLSATPIPRTLYLSLMGAKDMSTIET----PPLNRIPTETLICPYDE 719 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMA-EDLTEYLEEHGERVRYL--HSDIDTVERMEIIR 490 ++ + R + + + + E + + +++ + R + H +D E +++ Sbjct: 720 RIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIGHGQMDEHELEDVMH 779 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 + G DVL+ ++ GLD+P + + I AD+ G L Q GR R + Sbjct: 780 EFVSGAADVLISTTIIESGLDIPNANTIIIDRADRFGLA----DLYQLRGRVGRAQHK-- 833 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 Y + P GE RR ++Y+ G + D+ G G Sbjct: 834 -AYAYLLLPREMMTQGEARRRINAIKQYSS----LGAGFKIAMRDLEIRGAG----NILG 884 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 +S IV N+ D+ L+Q I +L+G Sbjct: 885 TAQSGHIV---NIGFDLYCALLKQAIAKLKGE 913 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 112/283 (39%), Gaps = 26/283 (9%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 L E LE + G++ S K+ + L + A ++ + K F Sbjct: 27 ALTEALEKKE-PLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQDGKIFAE 82 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 P+ D K + +I + R + ++E + ++V ++ Sbjct: 83 N---------------CLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTL 127 Query: 143 SAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 A+ L + + + + + +G + ++ L L Y R DQ RG + +RG ++D Sbjct: 128 PAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILD 187 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE-RIVQAM 260 +F + ++ LR+E FD+EV+ L F + + + + IYP + P + + Sbjct: 188 VFSNQMEE-PLRIEFFDDEVDSLRYFSLESQRSLEQVEEANIYPVSEQGKPSSLKAFSLL 246 Query: 261 EEIKEE----LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + + ++ + +VL E ++ EE + + E E Sbjct: 247 DYLPKDCLVIVDEPVRVLEEGKRVEEEFIAYFSQRAEAEANQE 289 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 101/271 (37%), Gaps = 30/271 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L S + D + +D + I+ + + + I + N Sbjct: 739 VLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELRRNG 798 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + ED L++ R Y H + E EI+ GE DVLV + Sbjct: 799 QVYYVHNRVKSIEDTALRLQKLLPEARIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTI 858 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I DADK G + L Q GR R+ K K++ Sbjct: 859 IETGLDIPNANTLIIQDADKMGLSQ----LYQIRGRVGRSNRTSYAFLLYK----KGKSL 910 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R K + E G G+ + D+ G N+ + G + V Sbjct: 911 TEESEKRLKAIREFTELG---SGIRIALRDLEIRGAGNVLGAEQHG--------HMEAVG 959 Query: 625 MDMSPKALQQKI--HELEGLMMQHAQNLEFE 653 ++ K L+ + + E + +FE Sbjct: 960 YELYTKLLRHAVLLEKGEKQEEE-----DFE 985 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 27/313 (8%) Query: 3 KPFKLNSAFKPSGDQP------EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL 56 +P + +P DQ A+R L E + +++ TG F +A++ Sbjct: 9 RPTTAEAPLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATG-LFPFLVADLARRA 67 Query: 57 --QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++P +++ L + +P+ +T + S Sbjct: 68 TAEQPLVIVTATTRATEDLRAALSALVGTE-------------HLVELPAWETLPHERLS 114 Query: 115 VNEHIEQMRLSATKAML----ERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + E VV+ V ++ L + VG Sbjct: 115 PRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAAVGDTYPLE 174 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + R L YAR D +RG F VRG ++D+FP ++ +RV+LF +E++ + F Sbjct: 175 DLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVA 233 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + PR P + + + EEL R +LL + + + Sbjct: 234 DQRSLDPAPRGLDAPPCREILLTPAVRERARARAEELPGVRDLLLRIADGIAADGMESLS 293 Query: 291 QFDLEMMNELGYC 303 ++ M ++ Sbjct: 294 PVLVDGMEQVADV 306 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 19/213 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-----ATQVDDLLSEIRQRA 443 + +SATP LE + + + + T P E PV A + + + IR+ Sbjct: 794 VLSMSATPIPRTLEMAVTGIRELSILAT----PPEERHPVLTYVGAQEDKQVTAAIRREL 849 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + + +L E R H ++ + ++ D +FDVLV Sbjct: 850 LREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLV 909 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+ + + + +AD+ G + L Q GR R+ + T + Sbjct: 910 CTTIVETGLDISNANTLIVENADRFGLSQ----LHQLRGRVGRSSERAYAYFLYNATKPL 965 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 + + R N + G Q K + Sbjct: 966 TELAHD----RLTTLATNTDLGAGMQVAMKDLE 994 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 123/359 (34%), Gaps = 25/359 (6%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F P Q E + + E ++ H ++ G GS + A + ++ + L +K A Sbjct: 11 FLPDMLQNEFGKEIFENIDQ-FRHLSVKGSAGSAPSIFAAELFVTRKKTVLFLIEDKEDA 69 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 EM++ + V YF P++ + +R + Sbjct: 70 LYATAEMEDLLGKENVLYF-------------PATHLAPYQIEKTQNANLVLRTDVLNKL 116 Query: 131 -LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ V++A S++ + + + + VG +D L + + D Sbjct: 117 NASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFTGELLQQFNFQLTDFVS 176 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 + G F VRG ++D+F + S++ R+ F E+E + F+ T + F + + Sbjct: 177 EPGEFSVRGGIVDVF-SYSNEEPYRISFFGNEIESIKTFNIETQLTNGKVNEFQLVSNMN 235 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLE----EQRLTQRTQFDLEMMNELGYCS 304 Y ++ + +L K+ + + D++ Sbjct: 236 YAVSGSKVSLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDIKHQPPAELFV 295 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 E + + ++ + AD LL+ + Q G ++ E LVE Sbjct: 296 SEEEFLKDIAAFKHIDFTLDTLKTSQADTLLI----QLNQTQQPGFHKNFELLLEDLVE 350 Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 22/221 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ-----RA 443 T+ ++ATP L+ S D V T P +PV T + EI + Sbjct: 727 TLTLTATPIPRTLQFSLMAARDLSVIKT----PPPNRQPVETSIVGFSEEIIRDAISYEI 782 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 + +V +D+ ++ + + H ++ + + D G++DVLV Sbjct: 783 QRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMEGKQLERNVLDFMEGKYDVLV 842 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+P + + I DA + G L Q GR R+ KA Y ITP Sbjct: 843 STTIVESGVDVPNANTMFINDAQRFGMA----DLHQMRGRVGRSNR-KAFCY--LITPPF 895 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + +R E +++++ G + D+ G Sbjct: 896 DMMTSDARKRLEAIEQFSD----LGSGFQIAMKDLEIRGAG 932 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 22/245 (8%) Query: 46 TFTIANVIADL----QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAY 101 + A V R +V+A A + +++ ++ P A Sbjct: 27 ALSAAGVALAWHRLAPRRMVVVAEGDREAEAIANDLR-------------WWLPRIPVAL 73 Query: 102 VPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKMML 159 +P DT + + RL A ++++ +VVV +V A L Sbjct: 74 LPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLVASAARLERL 133 Query: 160 HLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDE 219 + G + + ++ L + Y R Q G + VRG ++D+ +R++LF + Sbjct: 134 IVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLAS-PVRIDLFGD 192 Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ--AMEEIKEELAARRKVLLEN 277 EV+RL+ FDP T + V + R ++P + Q A+ +A R + +L Sbjct: 193 EVDRLAFFDPTTQRSVGDLERVELFPAREVRIDTDLAKQLEALAARVPAVADRVEAVLAG 252 Query: 278 NKLLE 282 + E Sbjct: 253 REPPE 257 Score = 58.3 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 22/221 (9%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSEIRQRAA 444 + +SATP LE S + D V T ++ P+ T V +++E +R Sbjct: 733 VLVLSATPIPRSLELSLVGIRDLSVLRTA----PVDRHPILTHVGPFDPAVVTEAIRREL 788 Query: 445 INERVLVTTLTK-RMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLV 501 + E + + R E + + R L H + + GE DVLV Sbjct: 789 LREGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQFWHGEADVLV 848 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ G+D+ + + + A++ G + + L +GR+ R Y +T S Sbjct: 849 ATTIVENGIDLARANTLIVDRAEQLGLAQLHQ-LRGRVGRSGRQ------AYAYLLT-ST 900 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 I + R + N + G G + D+ G Sbjct: 901 TGGISDIALERLRTVAENTDLG---AGYRIAMRDLELRGAG 938 >UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bacteroidetes RepID=Q11PH6_CYTH3 Length = 1122 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 56/348 (16%), Positives = 126/348 (36%), Gaps = 35/348 (10%) Query: 21 IRRLEEGLEDGLAHQT-LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 I+ L++ L++ + L G++GS A + ++ + + +K A ++++ Sbjct: 16 IQLLKQKLQERENNALFLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQ 75 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV--- 136 V F + Y V +++ R ++ +D Sbjct: 76 LLG-LPVFVFPASYKKPYHYEQVENANIL-------------QRAETLNYIINNQDKPSY 121 Query: 137 VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +V ++ + + ++ +G +++ + L + R D ++ G + +R Sbjct: 122 LVTYPLALSEKVINKRSLVENTFIARIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIR 181 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +IDIF + ++++ R+ELF E+E + F+P + V IP +I P +E Sbjct: 182 GGIIDIF-SYANELPFRIELFGTEIESIRTFNPESQLSVDNIPVLSITPNVQTRLLKEER 240 Query: 257 VQAMEEIK-------EELAARRKVLLENNKLLEEQ---------RLTQRTQFDLEMMNEL 300 + ++ A +++ E +E Q T D ++ Sbjct: 241 ESLFTFLPADTTLWIKDYALTTEIIEECFSKVESQFDTILSSTGNSALLTSPDALFEDKY 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + IE YS G P T ++ E ++ + Sbjct: 301 SFEKSIEAYSIIEFGPHSYIPNATRIEFEAKPQPSFNKEFNLLLEDFR 348 Score = 79.5 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 65/291 (22%), Positives = 111/291 (38%), Gaps = 41/291 (14%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSEI 439 + T+ ++ATP L S D + T P +PV T++ + + + Sbjct: 705 KINIDTLTLTATPIPRTLHFSLMGARDLSIIAT----PPPNRQPVTTEIHVFDEAFIRDA 760 Query: 440 RQRAAINERVLVTTLTK-RMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGE 496 + + + + + +++ R H ++ + E++ GE Sbjct: 761 ISFELKRGGQVFFVHNRVKDIDGMAFLIKKLVPDARVTFAHGQMEGDKLEEVMLKFVEGE 820 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 +DVLV N++ GLD+P + + I A G L Q GR R+ N KA Y Sbjct: 821 YDVLVSTNIIESGLDIPNANTIIINSAHMFGLS----DLHQMRGRVGRS-NKKAFCY--L 873 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSR 615 +TPS++ G++ +R EE G + D+ G N+ + G Sbjct: 874 LTPSVSALTGDSRKR----LSVLEEFSDLGDGFKVAMRDLDIRGAGNMLGAEQSGF---- 925 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 ++ DM K L + I EL+ E E A RD+L Q R Sbjct: 926 ----ITDLGFDMYHKILDEAIQELK----------ETEFADLFRDELDQQR 962 >UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED Length = 1111 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 110/305 (36%), Gaps = 26/305 (8%) Query: 46 TFTIANV-IADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 +A + A RP + +A + ++ + PE V + P Sbjct: 29 ALAVALLGFAQAARPLIHVARDGRRLDEIAAVLLALAPERTVAVY-------------PE 75 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERR---DVVVVASVSAIYGLGDPDLYLKMMLHL 161 D AS + + R + + + R D+V+ + + + + P+ + + L Sbjct: 76 WDCLPFDRASPSRGVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPETWESAHIEL 135 Query: 162 TVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEV 221 VG +D + +LA L Y +D+ + G VRG ID+FPA + + RVE + Sbjct: 136 RVGEPLDAEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPA-AAPLPCRVEHDGARI 194 Query: 222 ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER--IVQAMEEIKEELAARRKVLLENNK 279 + +DP++ + R I P T + + ++ + LA L+ Sbjct: 195 TAIRSYDPVSQRSRVETERLVIDPATEIILDPDSGLALEPFTGQEHRLARFYPALVTMLD 254 Query: 280 LLEEQRL------TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + E RL +R E + E G + S + P P + Sbjct: 255 YVPEARLVVEAGVEERAAAFFEQIAEGREAEGAMSPSGSRRDDRSQQTPAPDLYLAPKEW 314 Query: 334 LLVVD 338 ++D Sbjct: 315 AKLLD 319 Score = 52.9 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 5/147 (3%) Query: 388 QTIYVSATPGNYELEKS--GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP L+ + G + + P + PI V + L + +R+ Sbjct: 725 HILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTV-IAPFEESTLAAALRREHRR 783 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGI 503 + V + + L + + H ++ E + + G DVL+ Sbjct: 784 GGQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLAT 843 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLR 530 +++ GLD+P + + + DA++ G + Sbjct: 844 SIIESGLDVPRANTMLVWDAERFGLAQ 870 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 96/501 (19%), Positives = 182/501 (36%), Gaps = 76/501 (15%) Query: 101 YVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMML 159 + PS D +D ++ I+ R+ +L ++ + ++ A+ PD + L Sbjct: 20 FYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLKALTEKVFSPDFLRENSL 79 Query: 160 HLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDE 219 +T + RL E+ Y R G F +RG++IDI+ +D +R+ELF + Sbjct: 80 MITRSTKLTLS--PERLVEMGYERVFTVQNVGEFAIRGDIIDIYSPGND-FPVRIELFGD 136 Query: 220 EVERLSLFDPLTGQIVSTIPRFTIYP-----------------KTHYVTPRERIVQAMEE 262 E+E + F T + + + I P ++++ + Sbjct: 137 EIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDVRFICEDLQKVLDEYRK 196 Query: 263 IKEELAARRKVLLENN----------KLLEEQRLTQRTQ---------FDLEMMNELGYC 303 ++E+ K + K +E+ ++ T+ D++ + E G Sbjct: 197 FRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKKESLPILDVDEIEEGGLV 256 Query: 304 SGIENYSRFLSG-----------------------RGPGEPPPTLFDYLPADGLLVVDES 340 E+ G P E + Y+ + +D Sbjct: 257 VHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKIDRVHKYIGDPSQVKLDRM 316 Query: 341 HV-TIPQIGGMYRGDRARK-ETLVE-YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + Q R D +K LVE Y R + + P E E A Y+ Sbjct: 317 NRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQ 376 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT-- 455 +E+ D+ + +D ++ + + L + ++V V T Sbjct: 377 QQSIEEVMSDLASEKP-----MDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTV 431 Query: 456 --KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDM 512 ++ E+ E +E G +V L S E+ EII L+ GE D+++G + LL E ++ Sbjct: 432 LARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIGTHSLLNERIEF 491 Query: 513 PEVSLVAILDADKEGFLRSER 533 ++ LV I + K G + ER Sbjct: 492 SDLGLVIIDEEQKFGVEQKER 512 Score = 61.7 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 14/172 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLS-EIRQRAA 444 + +SATP L + + D V P G + V + DDL+ + + Sbjct: 522 VLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYS---DDLVKGAVIREIN 578 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V+ ++ E L+ + H + I+ + G DVL+ Sbjct: 579 RGGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLC 638 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 ++ G+D+P + + + DA + G + L Q GR R+ +A Y Sbjct: 639 TTIIENGVDIPNANTLIVDDAHRYGLSQ----LYQLRGRVGRSDR-RAFAYF 685 >UniRef50_UPI000197B5E2 hypothetical protein BACCOPRO_02808 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B5E2 Length = 269 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 83/214 (38%), Gaps = 15/214 (7%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 L GV S + + V+ R + + + A Y ++ + + + +F S Sbjct: 29 RTIFLEGVHASCTSLFASGVVKSADRVHLFILNDLEEAGYFYHDLVQVDGDEHILFFPSS 88 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDP 151 Y + +KDA+ E +R + + +VVV A+ + Sbjct: 89 YRRAIK---------YGQKDAAN----EILRTEVLSRLEKDEPLVVVTYPEALAEKVVSR 135 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + L VG ++ IL L E + D ++ G F +RG ++D++ S+ Sbjct: 136 NELTDRTMKLQVGQHVETEEILSTLTEYGFEHVDYVYEPGQFAMRGSILDVYSFASE-YP 194 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 R++ F +E++ + F+ T +I P Sbjct: 195 YRIDFFGDEIDSIRTFEVETQLSKEKKDSVSIVP 228 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 88/465 (18%), Positives = 151/465 (32%), Gaps = 68/465 (14%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP--TMVLAPNKTLA 70 P +A ++ E L QT+ G+ G + + ++ RP VL A Sbjct: 5 PLQRTLDAFKKKITPPEKRLISQTIPGIAREGFS-LLPGLLRRAGRPEILWVLTSTPEKA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L E++ D P + + S + I R+ A + Sbjct: 64 LRLVEEIRS---------APLLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHALDRL 114 Query: 131 LER--RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 DVVV V+ + P L + L GM D ++++ L Y R Q Sbjct: 115 ASDTPPDVVVSPVVAVLRKTLSPPLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVPQVT 174 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F VRG ++D++ +R+E D E+ + FDP T + V + + P Sbjct: 175 APGEFSVRGALVDLYST-DRRRPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLPSHE 233 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++TP L ++ ++ L + GIE Sbjct: 234 WITPSPS-----------------------------SLDTPSRDWIDRHLSLPFPPGIER 264 Query: 309 YSR-FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y F S L D V+D + I +I ++ A + + + Sbjct: 265 YLPSFFSETAAPVLSRPDILILVDDWKAVLDRTSDWISRIEEGWKVLPAEERSFLPA--- 321 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 P A P +E+E+L P P P+ +D + Sbjct: 322 -PDAAFFLPKSRQEWESLLPCLTVSDEAPEGTPSLLGS--------VPSARIDRNLS--- 369 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 L+SEI +R R ++ T+ + + LE Sbjct: 370 -------LISEI-ERQPREWRTVIFCRTRGQMSRIGDMLEAGELP 406 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 94/275 (34%), Gaps = 21/275 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + +SATP L+ + + T + + + E+ R E Sbjct: 750 RLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDRERIREVIDRELAREG 809 Query: 449 VLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + + R A L E G V Y H + E ++ E +LV Sbjct: 810 QVFFIHNRVSSIARWARYLAALFPEAG--VAYAHGQMGEEEIEAVMGKFLRRESRILVST 867 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + I AD G L Q GR R G Y ITPS + Sbjct: 868 TIVESGLDIPYANTILINRADMFGIA----ELYQLRGRVGR---GGQQAYAYFITPSE-E 919 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 A+GE R+R H G + D+ G + + ++ + Sbjct: 920 ALGEVARKRLHTL---TTHSGLGSGYQIAMRDLEIRGAGSLLGHQQTGQVAMVGLD---L 973 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 ++M +A+ E + +E++ A+I Sbjct: 974 YLEMVEEAVAALSSETPPPPGEEPARVEWKTEARI 1008 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 146 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 19/228 (8%) Query: 21 IRRLEEGLE-DGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPNKTLAAQLYGEMK 78 +++L +G+ + L G+TGS TF A + + ++ AA + +++ Sbjct: 16 LQQLVKGIHLSDPQYFQLTGLTGSATTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLE 75 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR--DV 136 + YF + + SS + +R A Sbjct: 76 SITQGLDIFYFPDSFKKAGFFNEINSSHSM-------------LRTEALMKFSGNAVHKK 122 Query: 137 VVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V+V A++ + Y M+ L VG ++ +L +L + D ++ G + + Sbjct: 123 VLVTYPEALWEKVAASVAYTGNMVQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYAL 182 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 RG ++DI+ ++ R+ELF E+++ + LFDP + + + T+ Sbjct: 183 RGGILDIYSFGNEK-PYRIELFGEDIDSIRLFDPESQLSERKLNQVTL 229 Score = 72.5 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 106/261 (40%), Gaps = 31/261 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD----DLLSE-IRQRA 443 T+ ++ATP L+ S D V T P +P+ T+V DL+ + I Sbjct: 717 TLTLTATPIPRTLQFSLMGARDLSVINT----PPPNRQPIETEVHVFDHDLIRDAIYYET 772 Query: 444 AINERVLVTTLTKRMAEDLTEYLE--EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V + +++ ++ + H ++ + E+I D ++DVLV Sbjct: 773 ERGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQMEGHQLEEVILDFIDRKYDVLV 832 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 N++ G+D+P + + I +A G L Q GR R+ N KA Y + P + Sbjct: 833 CTNIVESGVDIPNANTIIINNAHHFGLS----DLHQLRGRVGRS-NKKAFCY--LLAPPI 885 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 + G++ +R + ++++E G + D+ G N+ + G Sbjct: 886 STLPGDSRKRLQTLEQHSE----LGSGFQIAMRDLDIRGAGNLLGGEQSGF--------M 933 Query: 621 DNVPMDMSPKALQQKIHELEG 641 + DM K L + I EL+ Sbjct: 934 AEIGFDMYQKILDEAIRELKQ 954 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 90/501 (17%), Positives = 162/501 (32%), Gaps = 96/501 (19%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 T++L P+ A +L ++ + V P +T + S Sbjct: 41 TVILTPSGRGAEELARDLSCWTRGVEV---------------FPDWETLPHERLSPRTDT 85 Query: 120 EQMRLSATKAMLERRDV-------------------VVVASVSAIYGLGDPDLYLKMMLH 160 R+ A + +V + A + + + Sbjct: 86 MARRIWALHRLTHPEAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTKILSYPLFK 145 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 VG + + R LA L Y R + RG + +RG ++D+F A S +R+ELF +E Sbjct: 146 AQVGKAYGRDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSAVS-PHPVRIELFGDE 204 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + F + + + P E + +L Sbjct: 205 IDSIRPFAVSDQRTFNQEFQSVTAPACREFLLDETARVHAASLAAQLP------------ 252 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + + Y G+E+ L G LF+ LP LV + Sbjct: 253 --------QAAEILNLAAQGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATDL 299 Query: 341 HV---TIPQIGGMYRGDRARKETLVEYGFRLP------SALDNRPLKFEEFEALAPQTIY 391 ++G A + G +P S LD L+ E +A T+ Sbjct: 300 PRLEARAVELGETTAEFLAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMK-TLR 358 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 +S + E + + V PT II IR+RA + V++ Sbjct: 359 ISPFATH---ESATTSGAETVPLPTTGATGIIST-------------IRERAREHWTVVI 402 Query: 452 TTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLD 511 + M + L L E+ + + +D+D R G+ V V + EG Sbjct: 403 AATSNGMVQRLHRLLAENDIPAQ-VSADLDAEPE-------RSGKTWVTVA--PITEGFA 452 Query: 512 MPEVSLVAILDADKEGFLRSE 532 + E L+ I +A+ G ++ Sbjct: 453 LAEAKLLVISEAEALGKRQAR 473 Score = 51.7 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-----DLLSEIRQRA 443 + +SATP LE + + + + L P E PV T V + + IR+ Sbjct: 776 VLAMSATPIPRTLEMA----ITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRREM 831 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + +V + + ++L+ R+R H + + +++ D EFDVLV Sbjct: 832 LRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVLV 891 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLR 530 ++ GLD+ + + I A++ G + Sbjct: 892 STTIVENGLDVTNANTIIIDRAERMGLSQ 920 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 27/264 (10%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D+L ++ + + +++ + + M + G P D + L Sbjct: 342 ATPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEPSIRKIV-GQIRP---DRQTLM- 396 Query: 380 EEFEALAPQTI------YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 F A PQT+ + P + ++ +V + + + ++D +Q Sbjct: 397 --FSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEIID--------KSQKY 446 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 D + EI +++ ++ T TK+ +DL++ L+ R +H D +R +++ + Sbjct: 447 DRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRDKVMDLFK 506 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G + L+ ++ GLD+ ++ LV D F + + +GR R GKAI Sbjct: 507 TGRVNTLIATDVASRGLDVKDIKLVINYD-----FPKQIEDYVHRVGRTGRAGAQGKAIS 561 Query: 553 YGDKITPSMAKAIGETERRREKQQ 576 + D+ ++ Q+ Sbjct: 562 FLDQYEDKKISKELVDVLKQNNQE 585 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 114/303 (37%), Gaps = 17/303 (5%) Query: 34 HQTLLGVTGSGKTFTIANVI-----ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 + G+ GS + + A+ + +++ ++ A Y +++ + + + Sbjct: 30 RVQVKGLVGSLDSVMASATYKIHTEANQRINHILVLHDRDEALYFYNDLQNLLGKKNIWF 89 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDA--SVNEHIEQMRLSATKAM-------LERRDVVVV 139 F S Y V +++ + +N+ I ++ + A + ++V Sbjct: 90 FPSSYKRPYKFMEVENANILERAEVLNRINQQISNPQVVSIDAGKANEENPTNQEGFMIV 149 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 SA+ + + L+ VG +D + L + + D ++ G F +RG Sbjct: 150 TYPSALVEKVINKRSLLENTFTAEVGEKVDIEFLAEILHTYDFDKTDFVYEAGQFSIRGG 209 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DIF + S+D R+E FD+E+E + LFDP + + + + I P +E Sbjct: 210 IVDIF-SYSNDYPYRLEFFDDELESIRLFDPESQLSIEQVSQIAIIPNVQTKLVQEVRES 268 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + + K ++ + T+ E++ + G I + + Sbjct: 269 FLNFVPNNTKVWLKDYDATMDVIRKS-FTKVANNFKEILEKSGNTQVINDPDVLFETQAS 327 Query: 319 GEP 321 E Sbjct: 328 FEE 330 Score = 66.4 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 35/262 (13%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSEIRQRAA 444 + ++ATP L S D + T P + +PV T+ D+++ + Sbjct: 736 VLTLTATPIPRTLHFSLMGARDLSIIQT----PPLNRQPVTTEQHTFNDEVIRDAISFEL 791 Query: 445 INERVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + +A ++ + + + V H ++ + + + GE+DV Sbjct: 792 RRGGQVFFVHNRVKDIISIANNVLKLVPDAHVGVA--HGQMEGPKLEKTMMKFIEGEYDV 849 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ N++ GLD+P + + I A G L Q GR R+ KA Y + P Sbjct: 850 LISTNIIEAGLDVPNANTIIIDMAHTFGLA----DLHQMRGRVGRSNR-KAYCY--LLAP 902 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIV 618 + + + RRR + + G G + D+ G N+ + G Sbjct: 903 A-STLLNVESRRRLSALEEFSDLG---DGFKIAMRDLDIRGAGNLLGAEQSGF------- 951 Query: 619 EPDNVPMDMSPKALQQKIHELE 640 ++ +M K L + I EL+ Sbjct: 952 -ISDLGFEMYHKVLDEAIQELK 972 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 56 LQRPTMVLAPNKTLA-----AQLYGEMKEFFP-ENAVEYFVSYYDYYQPEAYVPSSDTFI 109 + +++ + L ++ FP E ++ F+S++ E S D F Sbjct: 1 MNEKELIITKDPFLWVIENLERIPESSVIIFPSERELQRFLSFHSPSGDEGIFFSHDVFP 60 Query: 110 EKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIID 168 +D V+ ++ R+S + + + S+ AI P+ + + Sbjct: 61 FEDVRVSAYVRNHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFG 120 Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 +L E+ Y R + G F +GEV+DIF S + R+ LFD+ VE + LFD Sbjct: 121 FH--PDKLVEMGYERVFTVVEPGQFSWKGEVVDIFVPGSV-LPYRLILFDDIVEEIKLFD 177 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 P + V I I+P +T E + A I+ A K Sbjct: 178 PGNQRSVKHISEIEIFPAGEVLTIEENVSLAKLRIENAEKATGKRF 223 Score = 59.0 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 85/257 (33%), Gaps = 20/257 (7%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP L + + + + P G P V PV ++ + + Sbjct: 627 VLTMSATPIPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDRLIRTA--VLREINR 684 Query: 446 NERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V+ L + + H + + + D G+ +L+ Sbjct: 685 GGQVIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQMPKRLFEKNVGDFYSGKLQMLLCT 744 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + + D+ + G + L Q GR R+ +A Y + Sbjct: 745 TIIESGVDIPNANTLIVDDSQRYGLAQ----LYQLRGRVGRSTR-RAFAYFLYNPKRLTP 799 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + +++ K E G+ + D+ G K + G I Sbjct: 800 -------KAKERLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQ-HGNISSIGLYLYK 851 Query: 624 PMDMSPKALQQKIHELE 640 M A + I ELE Sbjct: 852 EMVERAVAEARGIKELE 868 Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVR 474 +D ++ + + L + ++V + T ++ E LE G V Sbjct: 498 MDRLVSGDAGYGKTEVALRAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVD 557 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSE 532 L ER +I+R+L+ G+ DV++G + LL + + ++ LV I + G ++ E Sbjct: 558 ILDRYRTPKERQKILRELKNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKE 616 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 106/291 (36%), Gaps = 23/291 (7%) Query: 20 AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 R L + G T+ GV GS A + D+ P +V+ P+ + ++ Sbjct: 26 EFRELVTQIAAGRKG-TIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRT 84 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVV 138 F V++ P+ ++ + +++ I RL K + + ++ Sbjct: 85 FSSAEIVQF--------------PAWESDRSERL-LHDEIYGRRLRVLKQLTHGPQPAII 129 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V S+ ++ + VG +D + + L ++ G F +RG Sbjct: 130 VTSIESLLQPVPSAANVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRG 189 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI----YPKTHYVTPR 253 ++D+F A + R+ELF +E+E + F+ T + + + I Y K Sbjct: 190 GILDVF-APDWEQPARIELFGDEIESIRQFEIGTQRSLHPLETVEITVLRYGKGQTGHFS 248 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + A + EL + + LE+ L+ + LG S Sbjct: 249 DYLPTASACVLIELERMKDSAEQYLDRLEKIEDKFGLHETLQKLQPLGSLS 299 Score = 63.7 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 8/169 (4%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L S V D T LD + V+ D+L+ R Sbjct: 694 VLTMTATPIPRTLHMSLVGVRDISNLETPPLDRVAVETKVSRWGDELIRHAVLRELSRGG 753 Query: 449 VLVTTLTK-RMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + + E + L+ + H + +++ D G+FD+L+ + Sbjct: 754 QIFFVHNRVQDIELIAAKLQRIVPEAKIGIGHGQMGEGALEKVMTDFIAGKFDLLLATTI 813 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 + GLD+P + + I +A++ G L Q GR R + +A Y Sbjct: 814 VESGLDIPNANTIFIDEANRYGLS----ELHQLRGRVGRYKH-RAYCYM 857 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 120/339 (35%), Gaps = 46/339 (13%) Query: 274 LLENNKLLEEQRLTQRTQFDLEM-MNELGYCSGIENYSRF----LSGRGPGEPPPTLFDY 328 +L + L Q L++ +F L + G + +S+ + P L D+ Sbjct: 266 ILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 325 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF-----EEFE 383 + + + + ++ + + M + + +PS ++ + L F +E + Sbjct: 326 IEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQ 385 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 LA +Y + + + +++ T + + + L I Sbjct: 386 KLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDV------------EKLNYLKNIFNTT 433 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 A N +L+ TK+ A+ L +L G V +H D VER + R G+ +LV Sbjct: 434 APNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVAT 493 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY--------- 553 + GLD+P V V D + + IGR R N G+A + Sbjct: 494 AVAARGLDIPNVKHVINYDLPSD-----IEEYVHRIGRTGRLGNHGRATSFYVDKNNNIA 548 Query: 554 ---------GDKITPSMAKAIGETERRREKQQKYNEEHG 583 ++I P A+ + +R N+ H Sbjct: 549 IDLVDLLKEANQIVPQWLSALADELKRNSTMGSNNKRHN 587 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 70/389 (17%), Positives = 139/389 (35%), Gaps = 39/389 (10%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 + + + SG++F +A+ + + P +V+A N ++ ++ + Sbjct: 51 QRNCAIDSLPLSGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLECWG---------- 100 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGD 150 P +P + + + RLS ++L+ +++ + A+ L Sbjct: 101 -----SPYLILPEVEPVPAESL-PDPTFLAERLSTAYSLLDFPSGIIITTEQAMEEALPS 154 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P+L + L L V D++A++ +L Y R D RG F VRG +ID F +S Sbjct: 155 PELLKEKRLPLAVENSFDRKAVIEKLVTAGYERVDSVDCRGQFAVRGAIIDTFCWDS-CY 213 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 LR+E + L FDP+T + + + E ++++ + + L Sbjct: 214 PLRMEWEGNRLISLRQFDPITQRSFKPLAQ-----AHLCFFNLEDMLKSGASLHDYLPQA 268 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + + L + G F R L ++ Sbjct: 269 IPTFWSKSPEIPIPDVGIHFESHLFLDTPKGDW--------FYQERRWQLFLEALGRWIE 320 Query: 331 ADGLLVV------DESHVT-IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 +V+ +ES + I G+ ++ + GF P A + E F Sbjct: 321 KQWEVVIFVNNEGEESRLKEILNNQGISTEKILFSKSPLLRGFCWPEAKLSILTDAEIFG 380 Query: 384 ALAPQTIYV-SATPGNYELEKSGGDVVDQ 411 Q I + S +Y G D+ +Q Sbjct: 381 RYQNQKILLRSQQKNDYFRAPLGSDIFEQ 409 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 21/260 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP L + D + T + IE + I + Sbjct: 682 VLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPIETIVGPYDERVIRQAIERELNRGG 741 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V R E + L+ ++ H + E E++ G+ DVL+ ++ Sbjct: 742 QVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSI 801 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + I AD G L Q GR R+ Y + P I Sbjct: 802 IENGLDIPNANTIIIDRADLFGLA----DLYQLRGRVGRSNQK---AYAYLLLPRDL-FI 853 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 ++R K + EH G + D+ G G S+ ++ Sbjct: 854 QSDAKKRIKAMQ---EHSQLGTGFQIALRDLEIRGAG------NLLGTSQSG-HIASIGF 903 Query: 626 DMSPKALQQKIHELEGLMMQ 645 ++ K L++ I +++G + Sbjct: 904 ELYCKLLKKAIQKIQGKETE 923 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 128/385 (33%), Gaps = 41/385 (10%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIAD------LQRPTMVLAPNKTLAAQ 72 + + + L G + G+ GS A V + L +++ P+ A + Sbjct: 12 KQYKEIIRQLSSGKGCC-VNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDAEDARE 70 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 + ++K F P P+ + ++ E I RL + Sbjct: 71 DWEDLKTFS--------------NLPVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCR 116 Query: 133 RRDV------VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + V+V+S+ A+ ++ G ++ L Y Sbjct: 117 KNKDASHQTDVIVSSIQALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETS 176 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR----- 240 Q +G + +RG +IDIFP ++ I R+E F +E+E + F+ T Q V+ I Sbjct: 177 QVENQGEYAIRGGIIDIFPFATE-IPCRIEYFGDEIESVRSFNVETQQSVAQINSCQILF 235 Query: 241 ----FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + ++P + + E L ++ + ++LE + + E+ Sbjct: 236 VHKMYGLHPMQGEIQKTSLLDYLSGETTIILKEPTRIESKLRQMLEITDYKEALFTEEEI 295 Query: 297 MNELGYCSGIE-NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG--MYRG 353 +L + I + F + D P +V E ++ Sbjct: 296 FKQLKTFTKITLSKLPFTTENNAYAFQVKAIDEFPRQIQDIVAEFKKITEAHDKTIVFCI 355 Query: 354 DRARKETLVEYGFRLPSALDNRPLK 378 + A ++ E LP L L+ Sbjct: 356 NPAEEQRFREITSGLPEGLQRFELR 380 Score = 62.5 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 106/300 (35%), Gaps = 40/300 (13%) Query: 392 VSATPGNYELEKSGGDVVD-QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 ++ATP L S + D + L I + + + I N +V Sbjct: 705 LTATPIPRTLHMSLMGIKDISSLNTPPLGRQSIRTQIMRFDPQRIRQAILLEMNRNGQVY 764 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDI-DTVERMEIIRDLRLGEFDVLVGINLLR 507 E + L R L H + D + ++D + D+LV ++ Sbjct: 765 FVHNRVYNIERIAHTLSTIVPEARILVVHGQMMDEKLLAQRMKDFVDHKADILVSTTIIE 824 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 GLD+P V+ + I AD G L Q GR R + Y + P E Sbjct: 825 SGLDIPNVNTIFINCADSFGLA----DLHQLRGRVGRYKH---HAYAYIVLPIDRPVTPE 877 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKG---------------- 610 E+R + +++ E G + D+ G NI + G Sbjct: 878 AEKRVKAIEEFAE----LGAGFKIAMRDLEIRGAGNILGVEQHGHIAAVGYEMYCRLLEI 933 Query: 611 ---RGKSRPIVEPDNVPMDMSPKAL--QQKIHELEGLM---MQHAQNLEFEEAAQIRDQL 662 + ++ P+ EP +V + ++ ++ + I E M + ++ F+E +IR ++ Sbjct: 934 AVCKARNEPVSEPPDVSLKLNLESFLPDEYIPEYSLKMDIYRRLNRSNTFKEIDEIRKEM 993 >UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L3_GEMAT Length = 1104 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 18/230 (7%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT-LAAQLYGEM 77 A R+ + L A + G+ GS +A + L + +V+ ++ A + ++ Sbjct: 15 PAFDRMLKALPGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVIADQLGDAERWLADL 74 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV 137 + + V + + + E + + R+ + + + Sbjct: 75 QALLDDVPVALYPPREGFGEVE---------------PHAEVAGERVETLEKLGRSAVRI 119 Query: 138 VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 ++ + A+ P L L G ++ L + + R F VR Sbjct: 120 LLTTSRAVLERTALPRALSGARLELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVR 179 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G + DI+ + +R+E + +++ L FD T + I P Sbjct: 180 GGIFDIYSFGMAE-PVRLEFWGDDIIELRHFDLNTQRSTRDAELALILPV 228 Score = 74.8 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 13/203 (6%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 L+ + ++ATP L +S + D + T D + V D L+ E R Sbjct: 712 KLSTDVLTLTATPIPRTLHQSLAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRE 771 Query: 444 AINERVLVTTLTK-RMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 + + E + ++L R R H + E +++R GE D+L Sbjct: 772 LDRGGQVFFVHNRIETIEAIADHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDIL 831 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P + + + AD G + L Q GR R+ +A + + P Sbjct: 832 VSTLIVESGLDVPNANTMFVNRADHLGLAQ----LYQLRGRVGRSHR-RAYCF--LLVPD 884 Query: 561 MAKAIGETERRREKQQKYNEEHG 583 + E RR +++ E G Sbjct: 885 R---VDEDAERRLAVLEHHTELG 904 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 64/374 (17%), Positives = 123/374 (32%), Gaps = 49/374 (13%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI------------ADLQRPT 60 P Q ++++ L L + SG++ TI L Sbjct: 4 PRDSQIQSMQDLVPVLSRSDGFAAVTAALRSGQSGTIDGAWGGSCALAAASIATALDSVL 63 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ P + + G++ F PE P+ +T ++ V + + Sbjct: 64 LIVLPRLSEIDEFTGDLASFLG-------------TIPEI-FPAWETLPDEHD-VADTVF 108 Query: 121 QMRLSATKAML-----ERRDVVVVASVSAIYGLGDPDLYLKM-MLHLTVGMIIDQRAILR 174 RL + E V+V S A+ + + VG ID A ++ Sbjct: 109 GGRLRVLSRLQHSGGNESTPQVIVTSFPALLQPVPSRKQREAATRRIQVGDEIDTDAFMK 168 Query: 175 RLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQI 234 L E + R G F + G ++D++ +S + +R+E F +EVE + FD T + Sbjct: 169 WLLERGFERTTAIQLPGEFSMHGGILDLYSPDSA-LPIRIEFFGDEVESIRQFDVETQRT 227 Query: 235 VSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDL 294 + T + + P + ++ + L +N E + Sbjct: 228 LETCQQVDLT--LISPVPASVSGRQLQTPNRDEDGTTSESLLDNLPPEACIALIELPELI 285 Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP-----QIGG 349 + G R + RG P T+ + + S + QI Sbjct: 286 D--------EGKRYLDRLENPRGLFSVPATMARCTDFPSVTIAPISAESTEISCHLQIES 337 Query: 350 MYRGDRARKETLVE 363 + R R++ + L E Sbjct: 338 VERFTRSKSQMLEE 351 Score = 70.2 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 74/417 (17%), Positives = 132/417 (31%), Gaps = 47/417 (11%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q T+ E M + Y Sbjct: 586 PMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPTTVLAEQHTRTFSERMAD--YPI 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF + + + + A + +V +H I + + + Sbjct: 644 TIEGLSRF----KSKKEQRAILEGMAAGSVDLVIGTHRLIQKDIKFKDLGLLIIDEEQRF 699 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 G L L+ + +SATP L S + D T D + I Sbjct: 700 GVEAKEMLKRLRLQIDVLT--------LSATPVPRTLHMSLLGIRDISNLTTAPRDRVPI 751 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHS 478 E R + + + + N +V + + A+ + + + E + H Sbjct: 752 ETRITRFDPELIRHAMVRELNRNGQV-YFVHNRVHDLQKYADRIQQIVPEASIGIG--HG 808 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + E + + G+ D+ V ++ GLD+P + + I DA G L Q Sbjct: 809 QMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLS----DLHQL 864 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 GR R+ + +A Y M I K+ K EE+ G + D+ Sbjct: 865 RGRVGRSHH-RAYCYLLLRDGQMLTPIAA------KRLKAIEEYSELGAGFKIAMRDLEI 917 Query: 599 LGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE----GLMMQHAQNL 650 G NI T+ G V ++ + L+ +L+ A +L Sbjct: 918 RGAGNILGTEQSG--------HIAAVGYELYCQLLENACRKLKNEPIREHHHVAIDL 966 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 138 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 110/273 (40%), Gaps = 38/273 (13%) Query: 320 EPPPTLFDYLPAD-------GLLVVDESHVTI-----PQIGGMYRGDRARKETLVEYGFR 367 P L D+L A LV+DE+ + PQI + R ++TL+ + Sbjct: 410 ATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM-WSAT 468 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 P +E + LA + LE S + QVV + + Sbjct: 469 WP----------KEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVD-------VCDEFS 511 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++ LLS+I + ++++ TKR ++L ++ G R +H D ER Sbjct: 512 KEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDF 571 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 ++R+ R G+ ++LV ++ GLD+ + V D + ++ I IGR R N Sbjct: 572 VLREFRSGKSNILVATDVAARGLDVDGIKYVINFD-----YPQNSEDYIHRIGRTGRSNT 626 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 G + + K AKA+ + RE Q+ N Sbjct: 627 KGTSFAFFTKNNAKQAKAL--VDVLREANQEIN 657 >UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Desulfovibrionales RepID=B8DPF5_DESVM Length = 1197 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 113/304 (37%), Gaps = 34/304 (11%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQ 97 G+ G+ + +A + R +++ + A+ F PE + + V+ + Sbjct: 48 GMGGAAR---LALALMRAGRDVVMVVRDAAELAEARALTTLFSPELSGTDPAVTQARWDA 104 Query: 98 PEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD--VVVVASVSAIYGLGDPDLYL 155 P + R+++ A+ R ++++ + + L D++ Sbjct: 105 QWIVFP-----QHPAGTRGRGAWAARMASLYALSRREHPRGIIISVDNLLPKLPPVDIFE 159 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 L L G + +L + + + R + G RG+++DIFP + LR+E Sbjct: 160 HHELRLARGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEK-PLRLE 218 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F + +E + LFD + + ++++ F + P V E +E A R K L Sbjct: 219 FFGDTLEDIRLFDATSQRSLASLEEFRLLPVAPVV--------GCREYREAAARRWKQLR 270 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 ++ + EQ + E+ L E + D+LP D + Sbjct: 271 KDGVIDGEQAAALARMAEGEV--------------TGLLPGAWYENATWMEDWLPRDAVW 316 Query: 336 VVDE 339 ++ + Sbjct: 317 LLPD 320 Score = 62.1 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 7/182 (3%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV 451 ++ATP L+ S + + V T + + + + L +I +R E + Sbjct: 793 LTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDQNALRQILEREIAREGQVF 852 Query: 452 TTLTKRMA-EDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 + E + E++ R H + E + + GE DVLV ++ Sbjct: 853 WVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVES 912 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD P + + + A G + L Q GR R+ ++ + + + Sbjct: 913 GLDFPRANTLIVDQAQMFGLGQ----LYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQR 968 Query: 569 ER 570 R Sbjct: 969 MR 970 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 21/233 (9%) Query: 376 PLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVR-PTGLLDPIIEVRPV---- 428 P + F + P QT+ SAT + +VV+ G D Sbjct: 456 PQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIE 515 Query: 429 ---ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + Q+ L + Q ++ L+ TKR + L L R +H D + ER Sbjct: 516 VVSSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRER 575 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ D R G+ ++L+ ++ GLD+ +V V D K + S I IGR R Sbjct: 576 DRILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPK-----NIESYIHRIGRTGRA 630 Query: 546 VN-GKAILYG--DKITP---SMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 N G AI + D +P +MA+ I E R ++ + E P+ +K Sbjct: 631 GNKGTAISFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKIGAPRAPSKS 683 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 61/381 (16%), Positives = 131/381 (34%), Gaps = 57/381 (14%) Query: 45 KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 ++ +A + +P +V+ P+ A +++++ +A Q A + + Sbjct: 81 RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGDA-----------QDVAKLEA 127 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDV--------VVVASVSAIYGLGDPDLYLK 156 +T + S R++ + + + V+V V ++ + Sbjct: 128 WETLPHERLSPRADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDI 187 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L G + ++RL E Y R D +RG F VRG +ID+F A + +R+E Sbjct: 188 DPLLFECGKELTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVF-APTMTHPVRIEF 246 Query: 217 FDEEVERLSLFDPLTGQIVS-TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F +E++ + F + I P +I E++ R + L+ Sbjct: 247 FGDEIDTIKQFHASDQRTYGNNIASIWATPCREL------------QITEKICKRARSLI 294 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + ++ LE + G+E+ L R ++ + LP + ++ Sbjct: 295 GSIPNADD---------MLESIANSIPVEGMESLLPALVDR-----MESVQNMLPKESVI 340 Query: 336 VVDESHVT---IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++ + + A + G P+ F++ L Sbjct: 341 ILSDPEKCRRAADDVTATANEFLAASWHVAASG-----HGSGAPITFDQANFLDFDETIS 395 Query: 393 SATPGNYELEKSGGDVVDQVV 413 S N+++ K VD + Sbjct: 396 SLELSNHDVWKLTSFGVDNQI 416 Score = 58.3 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 8/169 (4%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 + +SATP LE + + + T D + + A + + I++ Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGG 868 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + ++E RV H + + +IRD + DVLV + Sbjct: 869 QVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTI 928 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 + GLD+ + + + AD+ G + L Q GR R +A Y Sbjct: 929 IETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHE-RAYAYF 972 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 67/455 (14%), Positives = 132/455 (29%), Gaps = 82/455 (18%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + + + G + + +AN + +V+A + A Sbjct: 9 QENSFPAISLFENADNEAIHVNGASVPLASMMVANRFLKSPQNILVIAKDYRSAEVWVEN 68 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRD 135 ++ E V +F PS + E + + RL + + + Sbjct: 69 LESMVGEEFVRFF-------------PSLGLKPYEIKVPFEGVLEERLKFFRDVSHTEKP 115 Query: 136 VVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV + A + L +P ++ + L VG ++ ++ + + G F Sbjct: 116 FVVVCPLDAFLMKLPEPGEIMRQVRTLRVGDQLEPSSLRPWFLDHGFVEQPMVSGVGEFS 175 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++D+ +R+E + +E+E + FD + + + + +P + P Sbjct: 176 IRGCIVDVNCLLY-PHPIRIEFYGDEIESIRAFDIFSQRSLEQMTHIEFFPMGEFTVPES 234 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + EE + S + Sbjct: 235 VMAG-----------------------EECSVE----------------------SLWWH 249 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 +L DY+P L+ +E + MY R A D Sbjct: 250 RPHHQRLVASLLDYMPRASLVF-EELSLLSETASKMYGAFR--------------GAYDE 294 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP---VATQ 431 + AP I+ + + +V G + +RP + Sbjct: 295 ARVTDAGVA--APADIWFKIGELSRLFVGRASLDMTRVKVDDGNW-HEMHMRPQDFTSNG 351 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 D + EI + RV V T L E Sbjct: 352 TDAVAKEIEEFYDKGGRVYVMAQTLGGVNRLREIF 386 Score = 76.8 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 89/226 (39%), Gaps = 22/226 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSE- 438 LA T+ +SATP L S V D + T P I PV T++ D++L Sbjct: 713 RLAVDTLSMSATPIPRSLHLSMTGVRDISLINT----PPINRLPVETKLMQRDDEVLKNA 768 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGE 496 I A +V V + LTE +E +V H ++ E ++ + Sbjct: 769 ILDELARGGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVAHGQMEDHELERVMDAFLSRK 828 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 FD+LV +++ GLD+P + + I++A G + L Q GR R+ + Sbjct: 829 FDILVSTSIIESGLDVPNANTIIIMNAHHFGISQ----LYQMRGRVGRSS---VLAKAFL 881 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 + P I + RR K + + G G + D+ G Sbjct: 882 VIP-QRGEISQESMRRLKALEQFTDLG---SGYQLAMRDLEIRGAG 923 >UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Prevotella veroralis F0319 RepID=C9MMN8_9BACT Length = 1187 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 121/335 (36%), Gaps = 48/335 (14%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 Q AI +++E + + L G+ S A + ++ + + + A Y Sbjct: 14 PQVGAITKIQE--DQQVRSIFLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEEAGYFYN 71 Query: 76 EMKEF-FPEN------AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 ++K PE+ V +F S Y + + NE + L+ Sbjct: 72 DLKTITMPEDGTSNTAEVLFFPSSYRRAVK----------YGQRDAGNEILRTEVLTRLS 121 Query: 129 AMLERRDVV------VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 A+ + +V SA+ + + L L+V ID + + L + Sbjct: 122 ALATEKGTTNRLPLYIVTDPSALSEQVVSKRQLDERRLSLSVNQHIDIVEVEKTLRSFGF 181 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 D ++ G F VRG ++D++ + S ++ R++ F +++E + F+ + + Sbjct: 182 TETDYVYEPGQFAVRGSILDVY-SYSGELPYRIDFFGDDIETIRTFEVESQLSSKKLEHI 240 Query: 242 TIYPKTHYVTPRER-------------------IVQAMEEIKEE--LAARRKVLLENNKL 280 + P+ + + + A+E I +E A V E Sbjct: 241 EVVPELATLLEEKVPFLHFLPSDSFLAFKDFLYVRDAIENIYKEGFTAQALTVQREGKTE 300 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 +E+ L Q + + +++ + + NY R G Sbjct: 301 VEQHELEQAFRKEGQLITASHFMNEALNYRRIEFG 335 Score = 58.7 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 37/264 (14%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ-----RA 443 T+ +SATP L+ S D + T P P+ TQ+ E+ Sbjct: 767 TLTMSATPIPRTLQFSLMGARDMSIMRT----PPPNRYPIQTQIASFSHEVIADAINFEM 822 Query: 444 AINERVLVTTLTK-----RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + N +V + +A + +Y+ + RV H + E +II ++D Sbjct: 823 SRNGQV-YFVNNRVGNLPEIANLIKKYVPD--CRVAIGHGQMKPEELEKIIMGFMNYDYD 879 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VL+ ++ G+D+ + + I +A + G L Q GR R+ N KA Y + Sbjct: 880 VLLSTTIVENGIDISNANTIIINEAHRFGLS----DLHQMRGRVGRS-NKKAFCY---LL 931 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPI 617 A+ R R + + G G N + D+ G N+ ++ G Sbjct: 932 APPLAALNSDARHRLLALETFSDLG---SGFNLAMQDLDIRGAGNLLGSEQSGF------ 982 Query: 618 VEPDNVPMDMSPKALQQKIHELEG 641 +++ + K L Q + EL+ Sbjct: 983 --MEDLGYETYQKILSQAVTELKN 1004 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 136 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 22/247 (8%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPT-MVLAPNKTLAAQLYGEMKEFFPENAVEYFV 90 A L G+T S + + + P +V+A + A +L + F + + Sbjct: 7 RARHKLTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPHAQ 66 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------LERR------ 134 + + PE+ + D AS + +L AT+++ RR Sbjct: 67 TTLVF--PESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATAL 124 Query: 135 -DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 +V+V + A+ + + L+ G + +L RL +L Y G Sbjct: 125 PPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGH 184 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + +RG +ID++P + + R++ F +E+E + FDP+T + +T+ TI + Sbjct: 185 YAIRGGIIDVYPV-TANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRLD 243 Query: 253 RERIVQA 259 + A Sbjct: 244 PSKTGIA 250 Score = 69.4 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 93/273 (34%), Gaps = 29/273 (10%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + +SATP L + D V PT V+ ++ ++ +R Sbjct: 765 VLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTVVKTYDEKL--VIDAVRHELRR 822 Query: 446 NERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V + L E + H ++ + E++ + G + +LV Sbjct: 823 GGQVFYLHNRIETINLVAARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCT 882 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ GLD+P + + I AD+ G + L Q GR R + +A Y Sbjct: 883 TIIESGLDIPNCNTILIEGADRFGLSQ----LYQLRGRVGRFKH-QAYAYLLL---HRHT 934 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + + R+R + +H G + D+ G G + V Sbjct: 935 RLLDVARQRLTAMR---QHTQLGAGFRIAMRDLELRGAG------NLLGAQQSG-HIVGV 984 Query: 624 PMDMSPKALQQKIHELEGLMMQHA----QNLEF 652 ++ + L+Q + L+G A L+F Sbjct: 985 GFELYCQLLRQSVARLKGEKTAAAIRASVKLDF 1017 >UniRef50_A1IIT4 RNA helicase n=1 Tax=Neobenedenia girellae RepID=A1IIT4_9PLAT Length = 548 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 29/238 (12%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY-RGDRARKETLVEYGFRLP 369 + LS G P P+ D LP +L ++ QIG + RG+R F + Sbjct: 287 KILSNPDYGMPQPS-GDGLPRQTVLFSATFPPSVLQIGRSFLRGNRC-------ISFSVK 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + D+ P+ EALAP + +K G + +++V+ I+E Sbjct: 339 QSEDD-PVVPAWGEALAP----------THGSKKIIGQIPEKIVQKMK----IVEKFDWK 383 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 ++V +L+E+ Q +E +LV TKRM E L +L + G + LH + R + Sbjct: 384 SEVQKILNELLQDKDEDESILVFCNTKRMVELLEFHLYKSGLKCGRLHGGMGQTNRDRSL 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 R LR G +VLV ++ GLD+P + V + G + I +GR R Sbjct: 444 RLLRDGRINVLVATSVAARGLDIPAIGAVVNV-----GLPTNLDDYIHRVGRTGRFGQ 496 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 18/252 (7%) Query: 38 LGVTGSGKTFTIANVIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 +GV + + I + + ++A N LA QL ++ F + + Sbjct: 24 IGVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQ------IRGDKTK 77 Query: 97 QPEAYVPSSDTFIEKDASVNEHIE--QMRLSATKAMLERRDVVV-VASVSAIYGLGDP-D 152 Y P E + S + E R++A ++ + D +V V + A+ D Sbjct: 78 TRFLYFPEETELSEDEDSPVDRFETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVD 137 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 L L G ++ +L L Y G F RG +ID++P S D Sbjct: 138 ALTASQLVLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPI-SADTPY 196 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ F +E++ + DP+T + + I P + A + L AR Sbjct: 197 RIDFFGDEIDAIKELDPVTQRSGAPTESIAIDAA-----PTLELKPAPNGYADHLPARSA 251 Query: 273 V-LLENNKLLEE 283 LLE ++L+E Sbjct: 252 WALLEPDQLMES 263 Score = 76.0 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 113/288 (39%), Gaps = 40/288 (13%) Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DD 434 F+E+ + + +SATP L + + V T +E +P+ T V D Sbjct: 726 FKEWRSTVD-ILTMSATPIPRTLYMALTGARELSVIETA----PVERKPIQTIVKSYDDA 780 Query: 435 LLSE-IRQRAAINERVLVT---TLTKRM-AEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L+SE IR+ A +V T A L + L E V H +D + ++ Sbjct: 781 LVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVG--HGQMDEKKLENVM 838 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D ++ VLV ++ GLD+P + + I AD+ G + L Q GR R + Sbjct: 839 LDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQ----LYQLRGRVGRFKR-Q 893 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKA 608 A Y K + + R+R ++ H G + D+ G N+ ++ Sbjct: 894 AYAYLLLH---KHKRLMDVARKRLAAIRH---HNQLGAGFRLAMRDLELRGAGNLLGSEQ 947 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEF 652 G V ++ + L+Q + L+G L ++ + L+F Sbjct: 948 SG--------HIVGVGFELYCQLLKQSVARLKGDATALQIRASVKLDF 987 >UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWX2_PHYIN Length = 546 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 15/177 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + D + G LD I+EV + L + Sbjct: 323 QTLMWSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHL 382 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 R R+++ TKR A++L+ L + +H + ER ++R+ + G + Sbjct: 383 RDIYE-GGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQI 441 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 LV ++ GLD+ ++ V D K + I IGR AR N G +I + Sbjct: 442 LVATDVASRGLDIKDIRYVVNFDMPK-----NIEDYIHRIGRTARAGNKGTSISFFT 493 >UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Anaplasma RepID=Q5PBQ9_ANAMM Length = 1152 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 114/328 (34%), Gaps = 42/328 (12%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYD 94 + GV +A + + + + V + T A L +K F E V Sbjct: 36 VITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVF------- 88 Query: 95 YYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDP-D 152 +P D+ K S + + R+ + + V++ + A+ P Sbjct: 89 ------ILPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAH 142 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 + + G + A+++ L Y ++ + G+F VRGE++DIF D+ Sbjct: 143 SVASAAITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQPI-DNKPT 201 Query: 213 RVELFDEEVERLSLFDPLTGQIV-STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R++ + VE + FD T +P IYP + + E + + ++ Sbjct: 202 RIDFCYDAVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRYMQQYPNPD 261 Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 E M C G E + L + T+FDY+P Sbjct: 262 PAF-------------------AEAMLSRQKCMGEEQWLPLL----QADELSTIFDYVPN 298 Query: 332 DGLLVVDE-SHVTIPQIGGMYRGDRARK 358 L++ ++ S + ++ G D + Sbjct: 299 AKLVLAEQASEEVLRRLEGAQEEDYTAQ 326 Score = 75.2 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 12/171 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 + +SATP L S + + V P G + I + + I + Sbjct: 762 HVLSLSATPIPRTLHMSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNIIKTA--ILDEVS 819 Query: 445 INERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 RV T + + L++ +V H T +I+ D G+F VL+ Sbjct: 820 RGGRVFFTCPFISDIDGVLADLQKLVPNVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLT 879 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAIL 552 +++ G+D+P + + + +AD G + L Q GR R+ G A Sbjct: 880 TSIIESGIDIPFANTIIVHNADMFGLAQ----LYQLKGRVGRSTLKGYAYF 926 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 15/188 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + D + G LD I+EV A + L +I Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361 Query: 440 RQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + +VL+ T TKR+A+D+T +L + G +H D ER ++ + R G+ Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 ++V ++ G+D+ ++ V D F + + IGR R G A Y Sbjct: 422 IMVATDVASRGIDVKGITHVFNYD-----FPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD 476 Query: 558 TPSMAKAI 565 A+ + Sbjct: 477 NAKQAREL 484 >UniRef50_B3L5Y4 RNA helicase-1, putative n=11 Tax=Apicomplexa RepID=B3L5Y4_PLAKH Length = 669 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-----LDPIIEVRPVATQVD-DLLS 437 + QT+ SAT E + +V+ ++ G LD I EV V ++ L Sbjct: 405 SRQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELKLSYLL 464 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E+ Q+ VL+ K+ +D+ EYL G +H ++ ER E I R G+ Sbjct: 465 EVLQKTGPP--VLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKK 522 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 D+LVG ++ +GLD P + V D K+ + + IGR R GK + I Sbjct: 523 DILVGTDVASKGLDFPSIEHVINYDMPKD-----IENYVHRIGRTGRC--GKTGIATTFI 575 Query: 558 TPSMAKAI 565 + +AI Sbjct: 576 NKNQEEAI 583 >UniRef50_Q4MYL1 ATP-dependent RNA helicase, putative n=3 Tax=Piroplasmida RepID=Q4MYL1_THEPA Length = 707 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 61/266 (22%), Positives = 106/266 (39%), Gaps = 41/266 (15%) Query: 320 EPPPTLFDYLPADGL-------LVVDESHVTI-----PQIGGMYRGDRARKETLVEYGFR 367 P L ++L + V+DE+ + PQI + R ++TL+ + Sbjct: 447 ATPGRLLEFLSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLM-FSAT 505 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 PS + +F + ++ Q +LE + + Q V P Sbjct: 506 WPSEIKRLASEFCKANSIYIQV---------GDLELTANPNIRQNVE-----------FP 545 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + +V D L + ++VL+ + K A+ LT L + LH + +R Sbjct: 546 NSYEVRDKLFDFLGSIPPEKKVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRER 605 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NV 546 I+ R G+ +VLV ++ GLD+ ++ V LD K S I IGR R N Sbjct: 606 ILNMFRSGDVNVLVATDVAARGLDIKDIDYVINLDVPK-----SLLDYIHRIGRTGRGNS 660 Query: 547 NGKAILYG--DKITPSMAKAIGETER 570 G+++LY D +TP+ K + + Sbjct: 661 KGESLLYFPIDTLTPAKVKFAQDLSK 686 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 93/234 (39%), Gaps = 20/234 (8%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 + ++ L G+ + +RP + + N+ ++ +++E Sbjct: 33 NSRSNIKLFGIYKGFFPLLFLYL-KRYKRPILWVTNNEED-LSIWEDLQE---------- 80 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGL 148 + +P + + ++ RL A ++ +VAS+ S IY L Sbjct: 81 ------DLELSILPPYVHLPYERPLRSPQVQGKRLKAISDIIYNNSFSIVASLKSLIYPL 134 Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 + K +L + VG I + I + LAE Y R Q + G + +RG ++DIFP + Sbjct: 135 IPKENIEKRILKIKVGEEITREKIEKFLAENLYQRTPQVEKIGEYSIRGGILDIFPPLYE 194 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 + +R+E F +E+ + F+ + + T + P + + + ++ Sbjct: 195 N-PIRIEFFGDEISSIRFFNLEDKRSIKTTKEVILTPISELIEDKNEESYFLKN 247 Score = 74.4 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 23/278 (8%) Query: 377 LKFEEFEALAPQT--IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVD 433 L+ E F+ P +Y+SATP L + V T + + I+ V + Sbjct: 687 LQKESFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYNPE 746 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRD 491 + IR+ +V E + E L + Y H +D E E++ + Sbjct: 747 IIQEGIRRELERGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMDDEELTEVMSN 806 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 G+ DVL+ ++ G+D+P + + + +A+ G + L Q GR R+ +A Sbjct: 807 FYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQ----LYQLRGRIGRSYK-QAY 861 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Y + K + +R + K G GL + D+ G K Sbjct: 862 AYFLH---APLKKLSLDSIKRLEALKEFSSLG---SGLRLALRDLEIRGAG------KIL 909 Query: 612 GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 GK + ++V + + L++ I+EL+ + +N Sbjct: 910 GKEQHG-HINSVGFYLYLQLLEEAINELKNSQGKSEKN 946 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 92/256 (35%), Gaps = 13/256 (5%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P L D + + + ++ + + M + +P + + L F Sbjct: 413 PGRLLDVIQRGWIGLTKLRYLVLDEADRMLDMGFEPDMRRLVASPGMPPKENRQTLLFSA 472 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 Q + +Y G +V + Q+ D L I Sbjct: 473 TYPQDIQKLAADFLKTDYLFLAVG--IVGGACSDVEQTFVQVTKYSKREQLLDFLKTI-- 528 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 NER +V TKR A+ + +L + +H D + ER + + D + G+ +LV Sbjct: 529 ---GNERTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADFKAGKCPILV 585 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPS 560 ++ GLD+PEV V D K + + IGR R N G+A+ + D S Sbjct: 586 ATSVAARGLDIPEVQHVVNFDLPK-----NIDEYVHRIGRTGRCGNIGRAVSFYDPEVDS 640 Query: 561 MAKAIGETERRREKQQ 576 A T + +Q+ Sbjct: 641 QLAASLVTILSKAQQE 656 >UniRef50_Q3AFI3 ATP-dependent RNA helicase, DEAD box family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFI3_CARHZ Length = 430 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 18/224 (8%) Query: 388 QTIYVSAT-PGNYELEKSGGDVVDQVVRPTGLLDPIIEVR------PVATQVDDLLSEIR 440 QT+ SAT P + + V+ G + +R P +++ L+S + Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILN 235 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 I + +V TK+ +++ E L G + LH D+ ER + I+ + G+ ++L Sbjct: 236 SELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 V ++ GLD+P+VS V D ++ S I IGR R GKAI + Sbjct: 294 VATDVAARGLDIPDVSHVINFDIP-----QNPESYIHRIGRTGRAGREGKAITLINYRER 348 Query: 560 SMAKAIGETERRREKQQKYNEEHGITP---QGLNKKVVDILALG 600 + KAI E +R K++ E + + + KK++D + G Sbjct: 349 KLLKAIEEAINKRLKREILPEPVDLEEARFKKIAKKILDTITKG 392 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 73/195 (37%), Gaps = 17/195 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGL---------LDPIIEVRPVATQVDDLLSE 438 QT SAT + ++ +R T + +EV + Sbjct: 354 QTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFFDW 413 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +++ R++V T TK+ A+ LT + + +H D + ER I+ D + G + Sbjct: 414 LKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCN 473 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---VNGKAILYGD 555 VLV ++ + GLD+ V V D K + + IGR R N + D Sbjct: 474 VLVATDVAQRGLDIKNVEWVVNYDMPK-----TVEDYVHRIGRTGRAGAVGNSLTFITND 528 Query: 556 KITPSMAKAIGETER 570 TP + + + Sbjct: 529 THTPDRVRMAKDIVK 543 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 12/195 (6%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-----IIEVRPVATQ-VDDLLSEIRQ 441 QT+ SAT + + + G + I EV VA + D+L + Q Sbjct: 351 QTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQ 410 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + LV TKR A+ L ++L + V +H D ER ++ R G +L+ Sbjct: 411 GKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILI 470 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 + GLD+P V V D + + IGR R G A + + + Sbjct: 471 ATAVAARGLDIPNVKHVINFDLPSD-----IEEYVHRIGRTGRMGQPGSATSFFSEKNQN 525 Query: 561 MAKAIGETERRREKQ 575 + + + E R ++ Sbjct: 526 VVRDLVELLRESKQA 540 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 21/204 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-----------ATQVDDLL 436 QT+ SAT + + D + G L R V ++ +L Sbjct: 320 QTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIVQIVDVCQESDKENKLMELH 379 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 EI + + L+ TK+ ++LT + +G +H D ER ++ + R G Sbjct: 380 KEIINE--QDNKTLIFAETKKKVDELTRRMRRNGWPSICIHGDKSQSERDWVLNEFRSGR 437 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 +LV ++ GLD+ ++ V D + I IGR AR N G A + Sbjct: 438 SPILVATDVAARGLDVDDIRFVINYD-----YPHCSEDYIHRIGRTARSNKTGTAYTFFT 492 Query: 556 KITPSMAKAIGETERRREKQQKYN 579 +M +A +E Q N Sbjct: 493 P--GNMKQAKELIAVLKEANQAIN 514 >UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Prevotella RepID=C5VMF4_9BACT Length = 1178 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 120/321 (37%), Gaps = 29/321 (9%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 Q AI+++++ + + L G+ S A++ + T+ + + A Y Sbjct: 14 PQAGAIQKIQK--DKSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVLNDNDEAGYFYN 71 Query: 76 EMKEFFPEN-------AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 ++K V +F S Y + + NE + L+ Sbjct: 72 DLKTIAMPADGEGKVAEVLFFPSSYRRAVK----------YGQRDAGNEILRTEVLTRLS 121 Query: 129 AMLERRDVV----VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 A+ D +V SA+ L + L LTV ID + + L + Sbjct: 122 ALASDADNALPLYIVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTE 181 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 D ++ G F VRG +ID++ + S+++ R++ F +++E + F+ T + R I Sbjct: 182 TDYVYEPGQFAVRGSIIDVY-SFSNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEI 240 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P T E V ++ + E+ K L ++ + Q + + +L Sbjct: 241 VP--ELTTMSEEKVPFLQFLPEDAVLAFKDFLYVRDAID--NIYQEGFTNQALTEKLEGK 296 Query: 304 SGIENYSRFLSGRGPGEPPPT 324 + +E ++ R G+ P Sbjct: 297 TELEQRELEVAFRKEGQLVPA 317 Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 98/257 (38%), Gaps = 23/257 (8%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINE 447 T+ +SATP L+ S D + T + I+ + + + I + N Sbjct: 764 TLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNG 823 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ ++++ R H + E EI+ ++DVL+ + Sbjct: 824 QVYFVNDRISNLPEIANLIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTI 883 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+ + + I DA + G L Q GR R+ N KA Y + A+ Sbjct: 884 VENGIDISNANTIIINDAHRFGLS----DLHQMRGRVGRS-NKKAFCY---LLAPPLAAL 935 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 RRR + + + G G N + D+ G N+ ++ G +++ Sbjct: 936 NPEARRRLEALETFSDLG---SGFNLAMQDLDIRGAGNLLGSEQSGF--------MEDLG 984 Query: 625 MDMSPKALQQKIHELEG 641 + K L Q + EL+ Sbjct: 985 YETYQKILNQAVMELKN 1001 >UniRef50_Q7S5R1 ATP-dependent RNA helicase dbp-3 n=32 Tax=Eukaryota RepID=DBP3_NEUCR Length = 614 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 21/289 (7%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D+L + + + S + + M + L+ G P + L F Sbjct: 315 ATPGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKLILSGC--PPKEQRQTLMF 372 Query: 380 EEFEALAPQTIYVS-------ATPGNYELEKSGGDVVDQV-VRPTGLLDPIIEV---RPV 428 L Q + S T G+ G+ + ++ ++ +EV R Sbjct: 373 TATWPLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRIEQKVEVVDPRGK 432 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 ++ +LL E ++ + ++R+LV L K+ A + ++L G +V +H D+ +R Sbjct: 433 EFRLYELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRS 492 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 + + G VLV ++ GLD+PEV LV + F + + IGR R Sbjct: 493 LEAFKSGTTTVLVATDVAARGLDIPEVKLVINV-----TFPLTIEDYVHRIGRTGRAGKL 547 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 GKAI + + + ++ R +Q EE + KK D Sbjct: 548 GKAITLFTEHDKAHSGSLVNIL--RAAKQPVPEELLKFGTTVKKKAHDA 594 >UniRef50_D2I3Z4 Putative uncharacterized protein (Fragment) n=2 Tax=Amniota RepID=D2I3Z4_AILME Length = 645 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 15/193 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV--------DDLLSEI 439 QT+ +SAT + + + + ++ G LD ++ V V V LL E Sbjct: 421 QTVMISATWSDTIHQLGQSYLKEPMIVYVGTLD-LVAVNTVTQNVIITTQEEKRSLLQEF 479 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 Q + ++V+V + +A+DL+ L G V+ LH D D +R + D R G+ V Sbjct: 480 LQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVKV 539 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKIT 558 L+ +L GLD+ +++ V D F R+ + +GR R G +I + Sbjct: 540 LIATDLASRGLDVNDITHVYNYD-----FPRNIEEYVHRVGRTGRAGKTGLSITLMTQND 594 Query: 559 PSMAKAIGETERR 571 +A + + +R Sbjct: 595 WKIATELIKILKR 607 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 125/346 (36%), Gaps = 37/346 (10%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ LL+ + + + M R G ET++E LP Sbjct: 133 PGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEK---LPE---------- 179 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQV---VRPTGLLDPIIEVR---PVATQVDD 434 Q SAT + + + D +R IE R Q D Sbjct: 180 -----KKQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPD 234 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L + + + V+V TK E++ E L++HG R +H DI R II + Sbjct: 235 ALIRVLE-VEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQ 293 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G D+LV ++ GLD+ V+ V D + + + IGR R +G IL+ Sbjct: 294 GAIDILVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRSGVTILF 348 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + +I R+R ++ + +H I + + +I + K + Sbjct: 349 VTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVE 408 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHEL----EGLMMQHAQNLEFEEA 655 I E D +D++ ++ E M + A + E A Sbjct: 409 -EYIKEHDVSAVDVAAALALLLHKDMPWRKELNMPKAASAFKEERA 453 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 24/254 (9%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D++ + + ++ + + M + + +P+ + L F Sbjct: 517 ATPGRLMDFINRGKIGLSSVQYIILDEADRMLDMGFETEIRKLVDSPGMPAKNERHTLMF 576 Query: 380 -----EEFEALAPQTIYVS-ATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 +E + LA + + + DV V++ ++ ++ Sbjct: 577 SATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQ--------VDQGDKRNKLI 628 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +LL+++ A R LV TKR A+ L L + G +H D ER E +RD + Sbjct: 629 ELLADV---ADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFK 685 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI- 551 G+ +LV ++ GLD+P+V V D E + IGR R N G+A Sbjct: 686 SGKCPILVATSVAARGLDIPKVEHVVNYDLPSE-----VDEYVHRIGRTGRCGNLGRATS 740 Query: 552 LYGDKITPSMAKAI 565 Y D S+A+++ Sbjct: 741 FYDDSANASLARSL 754 >UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM56_9DELT Length = 1144 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 110/339 (32%), Gaps = 46/339 (13%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA--QLYGEMKEFFPENAVE 87 H + + + + + +VL PN + QL E Sbjct: 16 RQSRHIHIHKAGPATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKF 75 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT--KAMLERRDVVVVASVSAI 145 + S++ P + R+ A+ M ++ V+ + S + Sbjct: 76 WESSWFFLPSPGH---------------SSRPAWGRIWASMFGLMQQKGKAAVLTADSML 120 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 L PD+ + L L G + IL +L E Y R G RG+++DI+ Sbjct: 121 NYLPPPDVVRDVFLLLMTGEETNPGDILDKLVEWGYVRVFMVTSPGEVSQRGDILDIYAP 180 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+E F +E + F+P++ + + + I P + + QA ++ Sbjct: 181 GY-PHPLRLEFFGNHLESIRTFEPVSQRSIRQLEECLILPVSPSPMEDHLVKQARDK--- 236 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 L ++ + L QR +F L E F P + Sbjct: 237 -----ADYLKSTGEI--SRELRQRLEFKL------------EEKDPFYPAGLFYSSPGEI 277 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++LP D + ++ ++ + + + E Sbjct: 278 SEFLPEDAHFFLVDT----ARLRTSLEEEEWKLKQWAEA 312 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 11/189 (5%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++ATP L+ S + V T LD + + D L QR + Sbjct: 750 VLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESSIIERDRDFLRHALQRELDRQG 809 Query: 449 VLVTTLTKRMA-EDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + + E + EY+++ R H + E + E D+LV + Sbjct: 810 QVFWVYNRVQGLESVMEYVQDLMPEARVDMAHGQMPERILEENMHRFWHHEIDILVCTAI 869 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD P + + + A G + L Q GR R+ Y I PS+ + + Sbjct: 870 IESGLDFPRANTLIVDQAHMFGLGQ----LYQLRGRVGRSQEQ---AYAYFIVPSV-REL 921 Query: 566 GETERRREK 574 GE R+R + Sbjct: 922 GEKSRKRMQ 930 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 23/205 (11%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEV---RPVATQVDDLL 436 QT+ SAT + + + D + G L+ I++V ++ L+ Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 EI + +V TKR ++LT + G +H D ER ++ + + G+ Sbjct: 334 EEIMSEKEN--KTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 +L+ ++ GLD+ +V V D + S I IGR AR+ G A + Sbjct: 392 APILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFF- 445 Query: 556 KITPSMAKAIGE-TERRREKQQKYN 579 TP+ K + + RE Q N Sbjct: 446 --TPNNIKQVSDLISVLREANQAIN 468 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 15/187 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL--------LSEI 439 QT+ +AT + + +V+ V G +D ++ + + V+ L L +I Sbjct: 201 QTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQI 260 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++++ TK+M + L L +H D ER ++ R G V Sbjct: 261 LRSQEPGSKIIIFCSTKKMCDQLARNLT-RPFGAAAIHGDKSQGERDYVLNQFRTGRSPV 319 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 320 LVATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFAEQD 374 Query: 559 PSMAKAI 565 A + Sbjct: 375 AKYASDL 381 >UniRef50_B2V9H9 DEAD/DEAH box helicase domain protein n=4 Tax=Hydrogenothermaceae RepID=B2V9H9_SULSY Length = 405 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 17/234 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQV----VRPTGLLDPIIEVRPVATQVDDLLSEIRQRA 443 Q + SAT L+ + + + V+P + I+ D ++ + Sbjct: 182 QNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEVL 241 Query: 444 AINE--RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + NE +V++ T TK A++L E L E G +H D +R ++ + R G+ +LV Sbjct: 242 SQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKILV 301 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ V LV G R S I IGR R G AI +TPS Sbjct: 302 ATDVAARGLDIKGVDLVINY-----GLPRDAESYIHRIGRTGRAGREGTAI---SIMTPS 353 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 K + +++ + + + + L+ D + + ++ + + R +S Sbjct: 354 EDKQLQNIQKKTKANIEV--INEAQEKKLSSAQKDKSSQKERSSRNQTRRRQRS 405 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 123/331 (37%), Gaps = 35/331 (10%) Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V+D + + G++ + ++ GF D+ ++ A QT+ SAT Sbjct: 130 VIDHLNRRTLKTQGIHTLILDEADEMMNMGFI-----DDMRFIMDKIPAEQRQTMLFSAT 184 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN--------- 446 E + + T + Q+D+ + +++ + Sbjct: 185 MPKAIQELVQQFMKAPKIIKTMNNEM------SDPQIDEYYTIVKELEKFDTFTNFLDVH 238 Query: 447 --ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 E +V TKR ++LT L G + LH DI +R+E+++ + + D+LV + Sbjct: 239 QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATD 298 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAK 563 + GLD+ VS V D ++ S IGR R G A+ + + I + Sbjct: 299 VAARGLDISGVSHVYNFDIPQD-----TESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 I + RR K + + L + DI QN + + R + + + + Sbjct: 354 QIEDVNNRRMKALRPPHR----KEVLKAREDDIKDRVQNWMSRENEPRLQR---ISSELL 406 Query: 624 PMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 S + + + EL + L FE+ Sbjct: 407 KEYDSTELVASLLQELVEANDEVEVQLTFEK 437 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 15/187 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD--------DLLSEI 439 QT+ +AT + + + + V G D ++ + + VD L +I Sbjct: 410 QTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQI 469 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + ++++ TKRM + L L +H D ER ++ + R G + Sbjct: 470 LRSQEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGRCPI 528 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GLD+ ++ +V D F + IGR R G A + Sbjct: 529 LVATDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCDQD 583 Query: 559 PSMAKAI 565 A + Sbjct: 584 SKYASDL 590 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 23/211 (10%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 GV G + A + +VL P A + G++ F E+ V +S D Sbjct: 119 GVWGGIRGLLAAALTRHHPH-VLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAGDGTG- 176 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER----RDVVVVAS--VSAIYGLGDPD 152 +S+ + RL + + R +VV S +AI + Sbjct: 177 --------------SSIRDADYAARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSVT 222 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 K L VG I+D I R LAE +A G F RG ++D++ + Sbjct: 223 SLEKATRELAVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSP-DQPQPI 281 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 R+E FD+E+E + FD T + T+ + + Sbjct: 282 RIEWFDDEIESIRRFDAATQRSSETLSKVEL 312 Score = 61.0 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 34/289 (11%) Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV----DDLLSEIRQRAA 444 + +SATP L + V D T P E V T+V D +L R Sbjct: 795 VLTLSATPIPRTLHMALVGVRDISNLET----PPAERMAVETKVTRWDDKMLRSAIVREL 850 Query: 445 INERVLVTTLTK-RMAEDLTEYLEE--HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + + +DL ++ R+ H ++ +++ D +FD+L+ Sbjct: 851 NRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIGHGQMEEGALEQVMVDFIDHKFDMLL 910 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P + + I D ++ G L Q GR R + +A Y ++P+ Sbjct: 911 ATTIIESGLDIPNANTMFIDDGNRYGLS----DLHQLRGRVGRYKH-QAYCYL-LVSPNK 964 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEP 620 ++R R EE+ G + D+ G N+ ++ G Sbjct: 965 RLTPEASKRLRAI-----EEYSQMGAGFAISMRDLEIRGAGNLLGSQQSG--------HI 1011 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLR 666 V +M + L+ + + + L + + +++ + EA D + LR Sbjct: 1012 AAVGYEMYCQLLEDAVRQAQKLPPKLSADVDIDLPIEAYLPEDYVPNLR 1060 >UniRef50_Q1MYS3 Probable ATP-dependent RNA helicase n=1 Tax=Bermanella marisrubri RepID=Q1MYS3_9GAMM Length = 449 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 111/305 (36%), Gaps = 45/305 (14%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D+L L+ D + + + M ++ GF D + Sbjct: 127 ATPGRLIDHLKQKKDLMEDVEYFILDEADRM-----------LDMGFE----EDVLTIAN 171 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDV---VDQVVRPTGLLDPI-IEVRPVATQVDDL 435 PQT+ SAT L+ + +++V + + IE + D Sbjct: 172 ACSGKAKPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKH 231 Query: 436 LSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 I NE + ++ T TK E +L H V YLH D+ ER ++ + Sbjct: 232 KQRILTWLLSNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQM 291 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAI 551 R G F VLV ++ GLD+ + LV D RS + IGR R +G AI Sbjct: 292 RNGRFKVLVATDVAARGLDIQSIDLVINFDM-----ARSGDDYVHRIGRTGRAEASGSAI 346 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 D ++ AI E+ + N +N K V +A G K KG Sbjct: 347 SLIDHTEWNLKAAI-------ERYLRVN---------MNHKYVKAIA-GNYKGPKKVKGN 389 Query: 612 GKSRP 616 GK+ Sbjct: 390 GKAAS 394 >UniRef50_Q255X7 Transcription-repair coupling factor-superfamily II helicase n=13 Tax=Chlamydiaceae RepID=Q255X7_CHLFF Length = 1084 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 19/207 (9%) Query: 43 SGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV 102 + F A + ++ +++ ++ L ++ F P Sbjct: 33 GARGFLAAKFFHERKKSVIMIT-TRSCIDDLLEDLSSFLG--------------FPPLEF 77 Query: 103 PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV-VASVSAIYGLG-DPDLYLKMMLH 160 PSS+ + VN R + E++ V V ++ A+ P + L Sbjct: 78 PSSEIDLSPKL-VNIDAVGKRDKILYELCEKKSPVFCVTTLKALLEKTRSPKDTVHQHLD 136 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 + VG ++D ++ L Y A +G F RG +IDIFP S + R+E + E+ Sbjct: 137 IQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQE-PFRIEFWGEK 195 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKT 247 + + F+P + + +I P T Sbjct: 196 IISIRPFNPSDQLSTGKVSKLSISPAT 222 Score = 65.6 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 24/254 (9%) Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVL 450 VSATP L S D + LD + + D+ LS +R + Sbjct: 712 VSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFILEHNDETLSAALRHELLRGGQAY 771 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 V L + R H + + E I + + E +VLV L+ Sbjct: 772 VIHNRIESIFRLGNTIRTLVPEARIAVAHGQMSSDELASIFQKFKDQEINVLVATALIEN 831 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 G+D+P + + + ADK G L Q GR R KA Y + P + + Sbjct: 832 GIDIPNANTILVDQADKFGMA----DLYQMKGRVGRWNR-KAYCYF--LVPHLDRLSVPA 884 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDM 627 +R E N++ G+ + D+ G NI T G + ++ Sbjct: 885 AKRLE---ALNKQE--YGGGMKIALHDLEIRGAGNILGTDQSG--------HISAIGFNL 931 Query: 628 SPKALQQKIHELEG 641 K L++ + L+ Sbjct: 932 YCKLLKKTVAALKN 945 >UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA Length = 770 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 87/245 (35%), Gaps = 27/245 (11%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D++ + + V + + M + + +PS D Sbjct: 446 ATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGMPSKSDR----- 500 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPT--GLLDPIIEVRPVATQVD---- 433 T+ SAT + + + + + T + +V QVD Sbjct: 501 --------HTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDK 552 Query: 434 --DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL I A R LV TKR A+ L L + G +H D ER + +RD Sbjct: 553 RAKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRD 612 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + +L+ ++ GLD+P+V V D KE + IGR R N G+A Sbjct: 613 FKSAVCPILIATSVAARGLDIPKVEHVINYDMPKE-----IDEYVHRIGRTGRCGNLGRA 667 Query: 551 ILYGD 555 + D Sbjct: 668 TTFYD 672 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 17/194 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + V G ++ I+ V + + L + Sbjct: 307 QTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHESL 366 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 ++ NE+V++ TKRM ++L + L G + +H D R II D R G ++ Sbjct: 367 NEK--KNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNI 424 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKAILYGDKI 557 L+ ++ GLD+ V+LV D F + + IGR AR G + + Sbjct: 425 LIATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTARGDVTEGLSHSFFTSE 479 Query: 558 TPSMAKAIGETERR 571 + AK + + + Sbjct: 480 NSACAKELVKILKE 493 >UniRef50_B0L0X0 VASA n=2 Tax=Penaeidae RepID=B0L0X0_FENCH Length = 712 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 21/261 (8%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLK 378 P L D++ ++ ++ + + M G + +T++ + P+A D L Sbjct: 403 ATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTA-DRITLM 461 Query: 379 FEEFEALAPQTI--YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 F A P I SA NY G +L + ++ ++ Sbjct: 462 ---FSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVL--CVPKFEKKAKLVEMC 516 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 EI A +E++LV KR+A+ + YL E R +H D +R + + D R G Sbjct: 517 EEIL-INADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGV 575 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 F++LV + GLD+ + +V D KE + IGR R N G +I + D Sbjct: 576 FNILVATAVAARGLDIKGIGVVVNYDLPKE-----IDEYVHRIGRTGRLGNRGLSISFYD 630 Query: 556 K-----ITPSMAKAIGETERR 571 + +T + K + E ++ Sbjct: 631 EEADVCLTKDLVKVLSEAKQT 651 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 80/202 (39%), Gaps = 22/202 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEV---RPVATQVDDLL 436 QT+ SAT + + + D G L+ I++V ++ L+ Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 EI + ++ TKR +DLT + G +H D ER ++ + R G+ Sbjct: 332 EEIMAEKEN--KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGD 555 +L+ ++ GLD+ +V V D + S + IGR AR+ N G A + Sbjct: 390 APILIATDVASRGLDVEDVKFVINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFF- 443 Query: 556 KITPSMAKAIGETERRREKQQK 577 TP K E + E+ + Sbjct: 444 --TPGNLKQARELIKVLEEANQ 463 >UniRef50_P38919 Eukaryotic initiation factor 4A-III n=631 Tax=root RepID=IF4A3_HUMAN Length = 411 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 14/202 (6%) Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVDDLLSE 438 A Q + +SAT + LE + + D + + +E D L + Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + I + V+ TKR + LTE + E V +H D+ ER I+++ R G Sbjct: 271 LYDTLTITQAVI-FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 VL+ ++ GLD+P+VSL+ D + I IGR+ R G AI + Sbjct: 330 VLISTDVWARGLDVPQVSLIINYDLP-----NNRELYIHRIGRSGRYGRKGVAINFVKND 384 Query: 558 TPSMAKAIGETERRREKQQKYN 579 + + I + + + N Sbjct: 385 DIRILRDIEQYYSTQIDEMPMN 406 >UniRef50_UPI0001AEC3C5 transcription-repair coupling factor n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC3C5 Length = 183 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 10/165 (6%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS I+ ++ + P +++ + A +L E+ F +N P Sbjct: 28 LQGSSAALCISQALSQYKGPIVLITADTPSAMKLEKEIAFFLSDNTKH---------TPI 78 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMM 158 P +T S ++ I RL ++ + + + V+ + P YL K + Sbjct: 79 TLFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQGEGIFIVPVNTLMQRLAPTNYLAKYL 138 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIF 203 L L G +D+ R L + Y Q F VRG +ID+F Sbjct: 139 LMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDLF 183 >UniRef50_Q7K4L8 LD33749p n=15 Tax=Bilateria RepID=Q7K4L8_DROME Length = 703 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 17/217 (7%) Query: 388 QTIYVSAT--PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD------LLSEI 439 QTI SAT PG L +S QV + L V+ + ++D ++ Sbjct: 463 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSF 522 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + + +++++ K A+DL+ L G + +H + D ++R + I D++ G + Sbjct: 523 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 582 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 LV ++ GLD+ +++ V D F + + +GR R G +I + + Sbjct: 583 LVATDVASRGLDIEDITHVINYD-----FPHNIEEYVHRVGRTGRAGRQGTSISFFTRED 637 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 +MAK + E + E Q+ +E H + + K + D Sbjct: 638 WAMAKELIEILQEAE-QEVPDELHNMARRF--KAMKD 671 >UniRef50_Q0ILZ4 DEAD-box ATP-dependent RNA helicase 9 n=5 Tax=Poaceae RepID=RH9_ORYSJ Length = 628 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 15/190 (7%) Query: 388 QTIYVSATPGNYELEKSGGDV-----VDQVVRPTGLLDPIIEVRPVATQ---VDDLLSEI 439 QT+ SAT + + + +D V L I + +A++ +L E+ Sbjct: 276 QTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGEL 335 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 + A + +V T TKR A+ L+ Y + + LH DI +R ++ R G F++ Sbjct: 336 IKEHAKGGKCIVFTQTKRDADRLS-YTMGRSFQCQALHGDITQAQRERTLKGFREGHFNI 394 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKIT 558 L+ ++ GLD+P V LV + S + GR R GKAI+ Sbjct: 395 LIATDVAARGLDIPNVDLVIHFELP-----NSSELFVHRSGRTGRAGKKGKAIVMHSYQQ 449 Query: 559 PSMAKAIGET 568 + + Sbjct: 450 SRAIRMVEND 459 >UniRef50_C5PZD1 ATP-dependent RNA helicase n=5 Tax=Bacillales RepID=C5PZD1_STAAU Length = 517 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 115/329 (34%), Gaps = 31/329 (9%) Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V+D + + G++ + ++ GF D+ ++ A+ QT+ SAT Sbjct: 141 VIDHLNRRTLKTDGIHTLILDEADEMMNMGFI-----DDMRFIMDKIPAVQRQTMLFSAT 195 Query: 396 PGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIRQRAAI--NERVL 450 + + T DP IE + + + E + Sbjct: 196 MPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAI 255 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR ++LT L G + LH DI +R+E+++ + + ++LV ++ GL Sbjct: 256 VFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGL 315 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+ VS V D ++ S IGR R G A+ + + I + I + Sbjct: 316 DISGVSHVYNFDIPQD-----TESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDAN 370 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 R+ + K+V + A +I + K ++ Sbjct: 371 GRKMSALR---------PPHRKEV--LQAREDDIKEKVENWMSKKSESRLKRISTELLNE 419 Query: 630 KALQQKIHELEGLMMQHAQNLE----FEE 654 + L +++ +E FE+ Sbjct: 420 YNDVDLVAALLQELVEANDEVEVQLTFEK 448 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 21/185 (11%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP----------IIEVRPVATQV 432 E QT+ SAT + +G + D + G + ++ + ++ Sbjct: 535 EKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQKL 594 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D+LSE + ++ LV KR A+ L YL E G +H D ER E +RD Sbjct: 595 CDILSE-----SGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDF 649 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G+ +L+ ++ GLD+P V V D +S + IGR R N GKA Sbjct: 650 KQGKAPILIATSVAARGLDIPNVKHVINYDLP-----QSIDEYVHRIGRTGRCGNLGKAT 704 Query: 552 LYGDK 556 + + Sbjct: 705 SFFSE 709 >UniRef50_Q7QDB7 AGAP003047-PA n=2 Tax=Culicidae RepID=Q7QDB7_ANOGA Length = 636 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 22/255 (8%) Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 P L D + + + + + + + M + + R+P + + L F Sbjct: 307 ATPGRLEDMIGRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEESRMPVTGERQTLMF 366 Query: 380 -----EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 + + LA +Y + + ++ + +E + + D Sbjct: 367 SATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIF--------WVEENIKRSHLLD 418 Query: 435 LLSEI-RQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LLS I +Q +E L+ TK+ A+ L E+L H V +H D ER E +R Sbjct: 419 LLSNITKQNDGDDENCLTLIFVETKKAADSLEEFLYNHNFPVTSIHGDRTQAEREEALRL 478 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G +LV + GLD+P V V D E + IGR R N G A Sbjct: 479 FRCGRCPILVATAVAARGLDIPNVKQVINFDLPAE-----VEEYVHRIGRTGRMGNLGTA 533 Query: 551 ILYGDKITPSMAKAI 565 + ++ ++A + Sbjct: 534 TSFFNEKNRNVANGL 548 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 15/201 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 Q + SAT + + + + + G L I++V ++ L+ + Sbjct: 337 QVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLL 396 Query: 440 RQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 +A NE + ++ TK+ +++T + G R +H D ER ++ R G Sbjct: 397 TDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHS 456 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 +LV ++ GLD+ +V V D + + + IGR R+ N Y Sbjct: 457 ILVATDVAARGLDVDDVKFVINYD-----YPSNSEDYVHRIGRTGRS-NNTGTAYTLFTH 510 Query: 559 PSMAKAIGETERRREKQQKYN 579 + KA + RE Q N Sbjct: 511 SNANKANDLIQVLREANQTIN 531 >UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS Length = 578 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 107/309 (34%), Gaps = 38/309 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG-----IENYSRFLSGRGPGE 320 E+ + V++ + L Q + +F E ++ G +N S + Sbjct: 232 EIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIMMGCHLLIA 291 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKF 379 P L D++ + D + + + M G +V + Sbjct: 292 TPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCT------------- 338 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQV 432 QT+ SAT +G + + + G++ I + Sbjct: 339 ---MRAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKR 395 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L+ +++ A + +V TKR A+ L YL E +H D +R + +RD Sbjct: 396 RKLIDILKESA---DGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDF 452 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAI 551 + G+ VL+ ++ GLD+ V V D K + + IGR R NG+A Sbjct: 453 KTGKMKVLIATSVASRGLDIKNVKHVVNYDMPK-----TIDDYVHRIGRTGRVGNNGRAT 507 Query: 552 LYGDKITPS 560 + D S Sbjct: 508 SFFDPDQDS 516 >UniRef50_Q86XP3 ATP-dependent RNA helicase DDX42 n=64 Tax=Eukaryota RepID=DDX42_HUMAN Length = 938 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 24/230 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-------PIIEVRPVATQVDDLLSEIR 440 QT+ SAT + + ++D + G + I+E+ + L+ Sbjct: 433 QTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRL 492 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + VL+ K AE+L L++ G + LH D+D ER ++I D + + VL Sbjct: 493 VEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 552 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P + V D ++ + IGR R K + Y +TP Sbjct: 553 VATDVAARGLDIPSIKTVINYDVARDIDTHT-----HRIGRTGRAGE-KGVAY-TLLTPK 605 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 + G+ R E ++ ++K+++D+ K++ KG Sbjct: 606 DSNFAGDLVRNLEGANQH----------VSKELLDLAMQNAWFRKSRFKG 645 >UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetazoa RepID=VASA_DROME Length = 661 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 110/321 (34%), Gaps = 43/321 (13%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG-----E 320 EL + V++ + L Q + +F E ++G G ++ G Sbjct: 315 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIA 374 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKF 379 P L D++ + D V + + M G ++ + P Sbjct: 375 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH-------- 426 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL--------DPIIEVRPVATQ 431 QT+ SAT +G + + V G++ I EV A + Sbjct: 427 --------QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 478 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 L EI A +V TKR A+ L +L E +H D +R + +RD Sbjct: 479 --SKLIEILSEQADG--TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRD 534 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G VL+ ++ GLD+ + V D + + IGR R NG+A Sbjct: 535 FKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK-----IDDYVHRIGRTGRVGNNGRA 589 Query: 551 ILYGDKITPSMAKAIGETERR 571 + D P +AI + Sbjct: 590 TSFFD---PEKDRAIAADLVK 607 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 15/194 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ SAT + + + D + G L+ I+EV + D L + Sbjct: 293 QTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYL 352 Query: 440 RQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + NE + L+ TKRM +D+T+YL E G +H D D ER ++++ R G Sbjct: 353 ETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSP 412 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 ++V ++ G+D+ ++ V D + + IGR R G AI + + Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPG-----NIEDYVHRIGRTGRAGATGTAISFFTEQ 467 Query: 558 TPSMAKAIGETERR 571 + + R Sbjct: 468 NKGLGAKLISIMRE 481 >UniRef50_Q4W7T7 VASA RNA helicase n=3 Tax=Anomopoda RepID=Q4W7T7_9CRUS Length = 843 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 33/230 (14%) Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 ++DE+ + G A+ T+ G R+ T+ S Sbjct: 563 FFILDEADRMLDMGFGSDIEFIAQHPTMTPVGRRV--------------------TLMFS 602 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQ-VDDLLSEIRQRAAINE 447 AT + + +G + D V TG + D E V Q + L EI + N Sbjct: 603 ATFPDDVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRNKLVEILRDLG-NS 661 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 RV+V +K+ A+ + +L + +H D +R + +R+ + G+ ++LV N+ Sbjct: 662 RVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRNILVATNVAA 721 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 GLD+ V V D + + IGR R N G++I + D Sbjct: 722 RGLDIAGVEYVINYDLPAD-----IEEYVHRIGRTGRVGNAGRSISFYDP 766 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 15/200 (7%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT SAT + + + D + G +D I+EV + D ++ + Sbjct: 317 QTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHL 376 Query: 440 RQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + L+ T TKR+A+++T +L + G +H D ER ++ + + G+ Sbjct: 377 EKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSP 436 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 ++V ++ G+D+ +++ V D + + + IGR R G AI + Sbjct: 437 IMVATDVASRGIDVRDITHVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTTD 491 Query: 558 TPSMAKAIGETERRREKQQK 577 A+ + ++Q Sbjct: 492 NSKQARDLVTILTEAKQQID 511 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 58/269 (21%), Positives = 100/269 (37%), Gaps = 22/269 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQ---VVRPTGLLDPIIEVRPVATQ-VDDLLSEIRQRA 443 QT+ SAT L S + + + P I+ T+ D L I Sbjct: 194 QTMLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLCRILDT- 252 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + ++++ TK+ ++L L G LH D+ +R +++ R G+ D+LV Sbjct: 253 TDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVAT 312 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMA 562 ++ GLD+ ++ V D + S + IGR R N G A+ + ITP Sbjct: 313 DVAARGLDIDNITHVVNFDVPSDS-----ESYVHRIGRTGRAGNTGVALTF---ITPREF 364 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + ER + + L ++ I++ Q I + PIVE Sbjct: 365 RQLKLIERSIKTKIIRGTL-PTDASVLERQREQIVSKMQTILE--QDRYQDYLPIVE--- 418 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLE 651 +Q M + A+ LE Sbjct: 419 --TLEKDYDVQDIAAAALKFMQEGAKALE 445 >UniRef50_C8PWG8 Cold-shock DEAD box protein A homolog n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWG8_9GAMM Length = 777 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 23/359 (6%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRK-VLLENNKLLEEQRLTQRTQFDLEMMN 298 + P H ++ + +A E+ R++ +++ L + L + Q + Sbjct: 121 AAFVLPILHQLSELQAKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYG 180 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 + YS L G L ++V + I R + + Sbjct: 181 SAMK----DLYSVPLVGGAAYSGQ---IRALKKGVQIIVATPGRLLDHINA-QRVNLSDL 232 Query: 359 ETLV--EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ----V 412 LV E L + E QTI SAT + + D + Sbjct: 233 TMLVLDEADRMLDMGFADDINAILEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINI 292 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 T +D + + LL ++ + ++ T TKR +E++ E L++ + Sbjct: 293 KVETAHIDEKVYFCDNFDHKNKLLEQLICDPERGQ-AIIFTATKRSSEEVAERLQQWDHK 351 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 YLH D+ +R I+ DLR G+FD++V ++ GLD+P ++ V D R Sbjct: 352 ACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDVAARGLDLPNITHVFNYDLP-----RQV 406 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 + IGR+ R G+ + + + + G R ++ + G+ P+ + K Sbjct: 407 EDYVHRIGRSGR--AGRTGIAINLCSRDDRRQFGNIARYLKRDINEAQVEGLEPRFVEK 463 >UniRef50_C9KJK1 ATP-dependent RNA helicase DeaD n=3 Tax=Veillonellaceae RepID=C9KJK1_9FIRM Length = 441 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 69/296 (23%), Positives = 116/296 (39%), Gaps = 22/296 (7%) Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + + V + + M R G ETL+E +A D + + Sbjct: 128 PGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEA-----TAADRQLML-- 180 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 F A P V A Y ++ + V + II+ R T++D L I Sbjct: 181 -FSATMPDR--VKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTRE-ETKIDKLCEIIN 236 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q +V TK+ A +T L G V LH D+ V+R +++ R E +L Sbjct: 237 QEQP--YLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQIL 294 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 ++ GLD+ V+ V D S I IGR R GKAI + + Sbjct: 295 CATDIAARGLDIEGVTHVFNYDIP-----HDAESYIHRIGRTGRAGERGKAITFVNARQY 349 Query: 560 SMAKAI--GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + I G +R R+++ + H + + K++ + + K +K + Sbjct: 350 DLLRRIEGGIKDRIRKQRSERGRRHKEKQEQILKEIREKREEKKAKRKPLSKYANR 405 >UniRef50_Q8SSG7 PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSG7_ENCCU Length = 503 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 121/318 (38%), Gaps = 41/318 (12%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG--MYRGDRARKETLVEYGFRLPS 370 + G+ P + D + A ++D H + M+ D A K L++ GF +P Sbjct: 198 IYGKKQDLPSYSGVDIVVATPGRLIDLLHRKKVDLSEIRMFVLDEADK--LLDMGFEIPI 255 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV---RPTGLLDPI----I 423 F QT SAT + + V + L I + Sbjct: 256 RE------IHGFVPKNTQTCLFSATYSPKLTRMINYFLPEDKVSIEISSETLKNIRQEIV 309 Query: 424 EVRPVATQVDDLLS--EIRQRAA-----INERVLVTTLTKRMAEDLTEYLEEHGERVRYL 476 EVR + ++L +I + + ++VLV K ++ + L++ G L Sbjct: 310 EVRNKKKMLLNILKGPDINLKGSWRMEVQPDKVLVFVERKSECGEVEKVLKKSGILCVSL 369 Query: 477 HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLI 536 H D + +R E ++ R G F V+V ++ G+D+ +V LV D K+ + I Sbjct: 370 HGDKEQADRDEALKGFRNGRFPVMVATSVAARGIDIKDVKLVINYDIPKD-----IKEYI 424 Query: 537 QTIGRAARNVN-GKAILYGD-KITPSMAKAIGETERRREKQ----------QKYNEEHGI 584 IGR R GK+I + D +T + KA+ E R + + +N Sbjct: 425 HRIGRTGREGKSGKSISFYDGGMTADLKKALVEVLRESKNAVPPFLTGASDEDFNARFER 484 Query: 585 TPQGLNKKVVDILALGQN 602 +K++ D +G Sbjct: 485 LKVTADKEMSDDEEVGLW 502 >UniRef50_B6AF33 DEAD/DEAH box helicase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AF33_9CRYT Length = 590 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 118/335 (35%), Gaps = 31/335 (9%) Query: 239 PRFTIYPKTHYVT-PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 + P I + + + R L N + ++ + ++E Sbjct: 186 DGLILCPSRELALQTTSIIEHFVSFLSKSKINRPGTLKRNREWEYSEKEKSNSDGNVEDY 245 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG----MYRG 353 N Y + N + G E + ++V + +Y+ Sbjct: 246 NRTYYP--LLNVICLIGGESAREKQNIIQR---QGVHMIVATPGRLADMLRKKKVTLYQC 300 Query: 354 DR---ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + L E GF + F+ F QT+ SAT E + +VD Sbjct: 301 RYFCMDEADRLTEAGFE-----EAVRYIFDNFHER-RQTVLFSATMPQKTQEFTRTALVD 354 Query: 411 QVVRPTGL-----LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 +V G L+ + E+ V + L ++ RVL+ K+ +++ EY Sbjct: 355 PIVVNVGRAGATTLNVLQELEYVRQEC-RLPHILQSLQKTAPRVLIFCENKKDVDEIHEY 413 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G + +HS + +R + + RLG DVL+G ++ +GLD P + V D K Sbjct: 414 LLLKGVKAAAIHSGLSQEQRRDSVEQFRLGLKDVLIGTDVASKGLDFPNIHHVINYDMPK 473 Query: 526 EGFLRSERSLIQTIGRAARNVN-GKAILYGDKITP 559 E + + IGR R + G + + D P Sbjct: 474 E-----IENYVHRIGRTGRGDSVGVSTTFIDNSLP 503 >UniRef50_B0ED30 ATP-dependent RNA helicase DBP2, putative n=2 Tax=Entamoeba RepID=B0ED30_ENTDI Length = 535 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 11/191 (5%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEI 439 QT+ +AT + + G + + G D I+EV + D ++EI Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIVEVCQERDR-DSKMNEI 391 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 +R ++VL+ TKR A++L L + RV +H D ER + D + G + Sbjct: 392 VKRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNY 451 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ +L GLD+ + +V + + R I GR R+V G+AI Sbjct: 452 LIATDLASRGLDIRNIEIVINYEMPSDIENYIHR--IGRTGRMGRSVEGEAISLFTYADA 509 Query: 560 SMAKAIGETER 570 +AK + + Sbjct: 510 RLAKDLISVLK 520 >UniRef50_C5DSB9 ZYRO0B15576p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DSB9_ZYGRO Length = 491 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 19/235 (8%) Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA-- 429 L ++ ++ ++F + Q + SAT + E + V D L + V + Sbjct: 259 LGDQCIRVKKFLPKSTQLVLFSATFPDQVKEYAKRVVPD--ANSLELQRNEVNVSAIKQL 316 Query: 430 -------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 + ++L+E+ I ++ TK+ A L L++ G +V LH D+ + Sbjct: 317 YMDCNDESHKYEVLTELYGLLTIGSS-IIFVSTKKTANLLYARLKQEGHQVSILHGDLQS 375 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGR 541 ER +I D R G VL+ N+L G+D+P VS+V D + + + +GR Sbjct: 376 KERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTTQTGQPDPSTYVHRVGR 435 Query: 542 AAR-NVNGKAILY-----GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 R G AI + +I S+ K + E R +++ I + L Sbjct: 436 TGRFGRKGVAISFVHDKKSYQILSSIQKYFQDVEMTRVPTDDWDKVEKIVKKVLK 490 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID... 588 e-166 UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organi... 588 e-166 UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID... 576 e-162 UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organ... 572 e-161 UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus Re... 552 e-155 UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVR... 552 e-155 UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vagina... 545 e-153 UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepI... 543 e-153 UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succ... 542 e-152 UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=... 539 e-151 UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organ... 537 e-151 UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=... 530 e-149 UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter p... 528 e-148 UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepI... 524 e-147 UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B... 513 e-143 UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmatacea... 498 e-139 UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 460 e-128 UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular or... 401 e-110 UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing prot... 371 e-101 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 354 5e-96 UniRef50_A5D636 Helicase subunit of the DNA excision repair comp... 345 4e-93 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 342 2e-92 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 333 2e-89 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 330 1e-88 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 326 1e-87 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 326 2e-87 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 325 2e-87 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 325 3e-87 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 325 4e-87 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 319 2e-85 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 318 5e-85 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 317 7e-85 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 313 1e-83 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 312 2e-83 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 311 4e-83 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 304 7e-81 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 300 1e-79 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 299 2e-79 UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 ... 298 5e-79 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 296 2e-78 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 294 7e-78 UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 T... 292 3e-77 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 292 3e-77 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 292 4e-77 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 291 6e-77 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 290 2e-76 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 287 1e-75 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 285 5e-75 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 283 2e-74 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 282 2e-74 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 282 3e-74 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 280 1e-73 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 278 4e-73 UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular or... 278 5e-73 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 277 1e-72 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 273 2e-71 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 273 2e-71 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 273 2e-71 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 265 6e-69 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 262 5e-68 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 261 8e-68 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 259 3e-67 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 258 4e-67 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 257 1e-66 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 255 5e-66 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 255 5e-66 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 255 6e-66 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 254 6e-66 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 253 2e-65 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 252 3e-65 UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 ... 252 3e-65 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 251 6e-65 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 251 7e-65 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 251 9e-65 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 248 5e-64 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 248 6e-64 UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamil... 248 6e-64 UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=L... 247 8e-64 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 247 1e-63 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 246 2e-63 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 245 4e-63 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 245 4e-63 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 245 4e-63 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 244 7e-63 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 244 7e-63 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 244 1e-62 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 242 3e-62 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 242 3e-62 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 242 4e-62 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 242 4e-62 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 239 2e-61 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 238 6e-61 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 238 8e-61 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 237 1e-60 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 236 2e-60 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 234 7e-60 UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=La... 234 9e-60 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 234 1e-59 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 233 2e-59 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 233 2e-59 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 232 3e-59 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 231 9e-59 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 230 1e-58 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 230 1e-58 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 229 2e-58 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 229 3e-58 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 229 3e-58 UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Str... 227 9e-58 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 225 6e-57 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 225 6e-57 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 225 7e-57 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 223 1e-56 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 223 2e-56 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 221 7e-56 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 221 9e-56 UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Sti... 220 1e-55 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 220 1e-55 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 220 2e-55 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 220 2e-55 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 219 2e-55 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 218 8e-55 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 217 1e-54 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 216 1e-54 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 215 7e-54 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 215 7e-54 UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamil... 214 7e-54 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 214 8e-54 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 214 1e-53 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 213 2e-53 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 213 2e-53 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 213 3e-53 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 212 3e-53 UniRef50_C1N749 Exinuclease ABC subunits B and C-containing prot... 211 5e-53 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 211 9e-53 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 211 1e-52 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 210 2e-52 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 208 4e-52 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 207 1e-51 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 206 2e-51 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 206 3e-51 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 205 4e-51 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 205 5e-51 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 205 5e-51 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 204 1e-50 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 203 2e-50 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 203 3e-50 UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichop... 202 4e-50 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 201 5e-50 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 201 6e-50 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 201 8e-50 UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZ... 201 1e-49 UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID... 200 1e-49 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 200 1e-49 UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 T... 200 1e-49 UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 ... 199 3e-49 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 199 4e-49 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 198 4e-49 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 198 5e-49 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 198 6e-49 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 196 2e-48 UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryo... 196 2e-48 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 196 2e-48 UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Ta... 196 3e-48 UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota ... 196 3e-48 UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryot... 195 4e-48 UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pn... 195 5e-48 UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=... 195 5e-48 UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 ... 195 7e-48 UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS 194 1e-47 UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukary... 194 1e-47 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 193 2e-47 UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=c... 193 2e-47 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 193 2e-47 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 193 2e-47 UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=... 191 5e-47 UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, s... 191 6e-47 UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax... 191 8e-47 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 191 9e-47 UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellu... 191 9e-47 UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V... 191 1e-46 UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetaz... 191 1e-46 UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryo... 190 1e-46 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 190 1e-46 UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 190 1e-46 UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerof... 190 2e-46 UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus... 190 2e-46 UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptos... 189 3e-46 UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomyc... 189 3e-46 UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Fi... 188 4e-46 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 188 4e-46 UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA 188 4e-46 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 188 5e-46 UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZ... 188 5e-46 UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 T... 188 5e-46 UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA 188 6e-46 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 188 8e-46 UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9D... 188 9e-46 UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ... 187 1e-45 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 187 1e-45 UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria... 187 1e-45 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 187 1e-45 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 187 1e-45 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 187 1e-45 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 187 1e-45 UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root Rep... 187 1e-45 UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Ta... 186 2e-45 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 186 2e-45 UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrah... 186 2e-45 UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=... 186 2e-45 UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7V... 186 2e-45 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 186 2e-45 UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus... 186 3e-45 UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B... 186 3e-45 UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME 186 3e-45 UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=... 186 3e-45 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 186 3e-45 UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SER... 185 4e-45 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 185 4e-45 UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixo... 185 5e-45 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 185 5e-45 UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=... 185 5e-45 UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdema... 185 5e-45 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 185 6e-45 UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostri... 185 6e-45 UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax... 185 7e-45 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 185 7e-45 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 185 7e-45 UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Eu... 185 7e-45 UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein... 185 8e-45 UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxopla... 184 8e-45 UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform ... 184 9e-45 UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family... 184 9e-45 UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerot... 184 1e-44 UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospi... 184 1e-44 UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Tr... 184 1e-44 UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 ... 184 1e-44 UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acho... 184 1e-44 UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clos... 184 1e-44 UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=... 184 1e-44 UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryot... 184 1e-44 UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimo... 183 1e-44 UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida ... 183 2e-44 UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA 183 2e-44 UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Ac... 183 2e-44 UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi... 183 2e-44 UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2... 183 3e-44 UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP... 182 3e-44 UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomat... 182 3e-44 Sequences not found previously or not previously below threshold: UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Euka... 184 9e-45 UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=... 182 3e-44 >UniRef50_Q6F9D2 UvrABC system protein B n=104 Tax=Bacteria RepID=UVRB_ACIAD Length = 675 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 422/670 (62%), Positives = 542/670 (80%), Gaps = 2/670 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++PF L + ++P+GDQP+AI++L G+E G +Q LLGVTGSGKT+T+ANVIA QRPT+ Sbjct: 6 NQPFDLVTNYQPAGDQPQAIKKLVSGIEQGNRNQLLLGVTGSGKTYTMANVIAQTQRPTI 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDA++N+HI+Q Sbjct: 66 VMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQ 125 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSAT+A+LERRD ++VASVSAIYGLGDP+ Y+KM+LH+ G I++ ++RRL E+QY Sbjct: 126 MRLSATRALLERRDAIIVASVSAIYGLGDPEAYMKMLLHVVEGDRINRDDLIRRLVEMQY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RN+ F RGT+R+RGE++D+FPAESD A+R+ELFD+EV+ + FDPLTG++ +PR Sbjct: 186 TRNELEFLRGTYRIRGEILDVFPAESDQFAIRIELFDDEVDSIRWFDPLTGKMQRKVPRV 245 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 TIYPK+HYVTP++ + +A+E IK+EL + K E++KLLE QR+ QRT++DLEMM +LG Sbjct: 246 TIYPKSHYVTPKDNLSRAIETIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLG 305 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR LSGR PG PPTLFDY+P D LL++DESHVT+PQIG MY+GDR+RKE L Sbjct: 306 YTNGIENYSRHLSGRSPGAAPPTLFDYIPEDALLIIDESHVTVPQIGAMYKGDRSRKENL 365 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRP+KFEE+E + P T++VSATP YELEKS +V+QVVRPTGL+DP Sbjct: 366 VNYGFRLPSALDNRPMKFEEWERIVPTTVFVSATPAKYELEKSDQ-IVEQVVRPTGLIDP 424 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IE+RPV TQVDD+LSEI R ++ERVL+TTLTKRMAEDLT YL+E+G +V YLHSDID Sbjct: 425 EIEIRPVLTQVDDVLSEINIRKEMDERVLITTLTKRMAEDLTSYLKEYGVKVAYLHSDID 484 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER++II +LR G +DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 485 TVERVKIIHELRTGVYDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 544 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN+ GKAILY D++T SM KAI ETERRREKQ ++N+ HGITP+ ++ V + G+ Sbjct: 545 AARNIKGKAILYADRMTDSMQKAIDETERRREKQIEFNKIHGITPRSAVRQKVKEIDTGE 604 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMS-PKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +G+ + + ++ PK + + +LE M++ ++ L+FE+AA++RD Sbjct: 605 VFNDDDIEGKISEQARALSADERHILADPKLFAKHMSKLEKEMLKASKELQFEQAARLRD 664 Query: 661 QLHQLRELFI 670 ++ +L+ + Sbjct: 665 EILRLKAQML 674 >UniRef50_Q5P0E7 UvrABC system protein B n=24 Tax=cellular organisms RepID=UVRB_AZOSE Length = 685 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 445/671 (66%), Positives = 538/671 (80%), Gaps = 6/671 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 PF+L+ F P+GDQP AI L EG+ DGL +QTLLGVTGSGKT+T+ANVIA RP + Sbjct: 15 DSPFRLHQPFPPAGDQPAAIELLTEGIGDGLMYQTLLGVTGSGKTYTMANVIARCGRPAL 74 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLAPNKTLAAQLY E +EFFPENAVEYFVSYYDYYQPEAYVPS D FIEKD+S+NEHIEQ Sbjct: 75 VLAPNKTLAAQLYAEFREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINEHIEQ 134 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRLSATK+++ERRDVV+VA+VS IYG+GDP Y M+LHL G I R +++RL +QY Sbjct: 135 MRLSATKSLMERRDVVIVATVSCIYGIGDPVDYHAMILHLREGERIAHRDLVQRLVAMQY 194 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R+D F+RGTFRVRG+VID+FPAE+ ++A+R+E+FD+EVE L+LFDPLTG + + RF Sbjct: 195 TRSDIDFRRGTFRVRGDVIDVFPAENAELAVRIEMFDDEVEHLTLFDPLTGHLKQKLVRF 254 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 T+YP +HYVTPR +++A+E IK+EL R + KL+E QR+ QRT+FDLEM+NE+G Sbjct: 255 TVYPSSHYVTPRATVLKAIEAIKDELRDRSAWFQTSGKLVEAQRIEQRTRFDLEMLNEMG 314 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +C GIENYSR LSGRG GEPPPTL DYLP+D LL VDESHV+IPQ+GGMY+GDR+RKE L Sbjct: 315 FCKGIENYSRHLSGRGQGEPPPTLIDYLPSDALLFVDESHVSIPQVGGMYKGDRSRKENL 374 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V YGFRLPSALDNRPLKFEEFE L PQTI+VSATP YE E G VV+QVVRPTGL+DP Sbjct: 375 VGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEH-QGQVVEQVVRPTGLIDP 433 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 I+VRP TQVDDLLSE ++R A+ ERVLVTTLTKRMAEDLT+YL E+G RVRYLHSDID Sbjct: 434 AIDVRPATTQVDDLLSEAKRRIAVGERVLVTTLTKRMAEDLTDYLAENGIRVRYLHSDID 493 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 TVER+EIIRDLRLG+FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGR Sbjct: 494 TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 553 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AAR++NG+AILY D +T SM AI ETERRR KQ +N+ +GI P+ ++K++ DI+ Sbjct: 554 AARHINGRAILYADVVTRSMRAAIDETERRRVKQIAFNQANGIVPKTVSKRIKDIID--- 610 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + G R + EP M+ K + + I +LE M +HA+NLEFE+AA RD+ Sbjct: 611 GVYGGDVERDG--RSVAEPPPEYFSMNEKTVAKSIRKLEKEMQEHARNLEFEKAAAARDE 668 Query: 662 LHQLRELFIAA 672 L +LR+ A Sbjct: 669 LFRLRQRTFGA 679 >UniRef50_Q03JK4 UvrABC system protein B n=142 Tax=Bacteria RepID=UVRB_STRTD Length = 668 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 371/667 (55%), Positives = 487/667 (73%), Gaps = 11/667 (1%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 F L S ++PSGDQP+AI L + ++ G Q L G TG+GKT+T++ VI + +PT+ Sbjct: 12 DNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTL 71 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+A NKTLA QLYGE KEFFP+NAVEYFVSYYDYYQPEAYVPSSDT+IEKD+SVN+ I++ Sbjct: 72 VIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDK 131 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 +R SAT A+LER DV+VVASVS IYGLG P Y + L G I + +L L ++Q+ Sbjct: 132 LRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSAVSLRPGQEISRDKLLNDLVDIQF 191 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND FQRG FRVRG+V++IFPA D+ A RVE F +E++R+ + LTG+ + + Sbjct: 192 ERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNLGEVEHL 251 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 ++P TH++T E + +A++ I EE+ + KL+E QR+ QRT++D+EM+ E+G Sbjct: 252 VLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMG 311 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 Y +GIENYSR + GR GEPP TL D+ P D L+++DESH+T+ QI GMY GD+ARK+ L Sbjct: 312 YTNGIENYSRHMDGRKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKML 371 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 V+YGFRLPSALDNRPL+ EEFE+ Q +YVSATPG+YE+E++ VV+Q++RPTGLLDP Sbjct: 372 VDYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTET-VVEQIIRPTGLLDP 430 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVRP Q+DDLL EI R ERV VTTLTK+MAEDLT+YL+E G +V+Y+HSDI Sbjct: 431 EVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYMHSDIK 490 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER EIIRDLRLG FDVL+GINLLREG+D+PEVSLVAILDADKEGFLR+ER LIQTIGR Sbjct: 491 TLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGR 550 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARN +G I+Y DKIT SM KA+ ET RRRE Q YN+EHGITPQ + K++ D++++ Sbjct: 551 AARNSDGHVIMYADKITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISIT- 609 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + + E M+ K Q+ I +L+ M + A+ L+FE AAQIRD Sbjct: 610 ---------KTNEAEVAEDTVNYSAMNKKERQEAIKKLQKQMHEAAELLDFELAAQIRDM 660 Query: 662 LHQLREL 668 + +L+ + Sbjct: 661 VLELKSM 667 >UniRef50_C1A4H0 UvrABC system protein B n=912 Tax=cellular organisms RepID=UVRB_GEMAT Length = 700 Score = 572 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 411/669 (61%), Positives = 509/669 (76%), Gaps = 2/669 (0%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M+ PF+L++ F P+GDQP AI L GL G QTLLGVTGSGKT T+ANVIAD RPT Sbjct: 1 MTAPFRLHAPFAPAGDQPRAITELSSGLHRGDRIQTLLGVTGSGKTMTMANVIADWGRPT 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +VL+ NKTLAAQLYGE+K FFP NAVEYF+SYYDYYQPEAYVPSSDT+IEKDAS+NE I+ Sbjct: 61 LVLSHNKTLAAQLYGELKSFFPNNAVEYFISYYDYYQPEAYVPSSDTYIEKDASINEDID 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++RL AT +++ER DVV+V++VSAIYGLGDP Y + M+ L+ G I + ILR L +Q Sbjct: 121 RLRLRATSSLMERDDVVIVSTVSAIYGLGDPVQYRERMVALSRGQQIARDDILRALVGIQ 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND AF+RGTFRVRG+ ++I PA ++ A+R+EL+ +E+ER+S DP+TG+ ++ + R Sbjct: 181 YLRNDVAFERGTFRVRGDTVEILPAY-EEQAVRIELWGDEIERISKIDPVTGETIAALER 239 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP H++T R I +A I++ELA R L KLLE QRL QRTQFDLEM+ E+ Sbjct: 240 MAIYPAKHFITNRPTIERASMAIRDELATRLAELRMAGKLLEAQRLEQRTQFDLEMLMEI 299 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G C+GIENYSR +SGR GE P L DY P D L+VVDESHVT+PQI MY GDRARK T Sbjct: 300 GTCAGIENYSRHISGREAGERPACLLDYFPDDYLVVVDESHVTLPQIRAMYNGDRARKLT 359 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV+YGFRLPSALDNRPL F+EF +L P+ + VSATPG EL+ S G VV+QV+RPTGLLD Sbjct: 360 LVDYGFRLPSALDNRPLVFDEFMSLVPRLVNVSATPGELELQLSEGVVVEQVIRPTGLLD 419 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P++EVRPV QVDDLL EIR R ERVLVTTLTKRM+EDLT+YL++ G RVRY+HSDI Sbjct: 420 PVLEVRPVKGQVDDLLHEIRARERRGERVLVTTLTKRMSEDLTDYLQQMGVRVRYMHSDI 479 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D +ERMEI+R LRLGEFDVLVGINLLREGLDMPEVSLVAILDAD+EGFLRS+RSLIQTIG Sbjct: 480 DAIERMEIVRGLRLGEFDVLVGINLLREGLDMPEVSLVAILDADQEGFLRSDRSLIQTIG 539 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN++G AILYGD+IT SM +AI ET RRR Q+++NE HGI P+G+ K V D + Sbjct: 540 RAARNLHGMAILYGDRITGSMQRAIDETTRRRTIQREHNEAHGIVPRGVTKSV-DEVRFI 598 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 +A + + G++ + S + L+ + ELE M + A L+FE AA++RD Sbjct: 599 TRVADARVEREGEAPAPRRLASESAPRSREELETLVGELEIAMREAAVALDFEAAARLRD 658 Query: 661 QLHQLRELF 669 QL ++R Sbjct: 659 QLFEVRTAL 667 >UniRef50_Q2JN87 UvrABC system protein B n=2 Tax=Synechococcus RepID=UVRB_SYNJB Length = 695 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 380/695 (54%), Positives = 498/695 (71%), Gaps = 32/695 (4%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 F+L S ++P+GDQP+AI L + + +G QTLLG TG+GKTFTIA+ I + RPT+V Sbjct: 2 SEFQLVSPYQPTGDQPKAIAGLVKSISEGHRFQTLLGATGTGKTFTIAHTIQQVGRPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A NKTLAAQL E++E FP NAVEYF+SYYDYYQPEAYVPS+DT+I K +S+N+ I+ + Sbjct: 62 MAHNKTLAAQLCNELRELFPHNAVEYFISYYDYYQPEAYVPSTDTYIAKSSSINDEIDML 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 R SAT+++ ERRDV+VVASVS IYGLG P+ YLK + VG I+QR +LR LA +QY Sbjct: 122 RHSATRSLFERRDVIVVASVSCIYGLGMPEEYLKASIPFKVGQEINQRDVLRDLASIQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND RG FR++G+V++I PA +D +R+E F +E+E + L DP+TG+I++++ Sbjct: 182 RNDLELVRGRFRLKGDVLEIVPAY-EDRVIRIEFFGDEIEAIRLIDPVTGEILNSLSALR 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+VTP ++ +A+ I++EL + + + KLLE QRL QRT++DLEM+ E+GY Sbjct: 241 VYPARHFVTPEAQLERAILNIEQELEEQLALFRKEGKLLEAQRLEQRTRYDLEMLREVGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 C+GIENYSR L+GR GEPP L DY D LLVVDESHVT+PQI GMY GDRARK+ L Sbjct: 301 CNGIENYSRHLTGRKAGEPPACLVDYFKADDWLLVVDESHVTVPQIRGMYNGDRARKQVL 360 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG---------------- 405 V++GFRLPSALDNRPLK EEF A Q I+VSATPGN+ELE+S Sbjct: 361 VDHGFRLPSALDNRPLKAEEFWAKVHQCIFVSATPGNWELEQSEAQFETRVEDGKTLKFY 420 Query: 406 ----GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLTK 456 G V++QV+RPTG++DP + VRP A QVDDLL EI R ++ RV+VTTLTK Sbjct: 421 VQGSGRVIEQVIRPTGVVDPEVHVRPTAGQVDDLLGEIYLRLERSQLGPAERVIVTTLTK 480 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 RMAEDLTEYL+E G RVRYLHS+I ++ER+EI++D R G FDVLVG+NLLREGLD+PEVS Sbjct: 481 RMAEDLTEYLQERGIRVRYLHSEITSIERIEILQDFREGAFDVLVGVNLLREGLDLPEVS 540 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 LVAILDADKEGFLR+ERSLIQ IGRAARNV G ++Y D +T SMA+AI ET+RRRE Q Sbjct: 541 LVAILDADKEGFLRAERSLIQMIGRAARNVRGMVVMYADTMTSSMARAIAETQRRREIQL 600 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 +YN +H ITP+ + KK + + I++ + +P+ P+ I Sbjct: 601 QYNRQHNITPKPIVKKNSNAILSFLAISRKLNDPDLEKAFQA-AQEIPLSEIPEL----I 655 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIA 671 +LE M + A+NLEFEEAAQ+RD++ +LR+ + Sbjct: 656 GQLELKMKEAAKNLEFEEAAQLRDRIKKLRQRLLG 690 >UniRef50_P10125 UvrABC system protein B n=462 Tax=root RepID=UVRB_MICLC Length = 709 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 374/692 (54%), Positives = 479/692 (69%), Gaps = 28/692 (4%) Query: 4 PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 PF++ S ++PSGDQP+AI L E +E G L+G TG+GK+ T A ++ LQRPT+V+ Sbjct: 13 PFEVISPYQPSGDQPKAIAELAERVEAGEKDVVLMGATGTGKSATTAWLVERLQRPTLVM 72 Query: 64 APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 NKTLAAQL E +E P NAVEYFVSYYDYYQPEAYVP +DTFIEKD+S+NE +E++R Sbjct: 73 VQNKTLAAQLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDSSINEEVERLR 132 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 SAT A+L RRDV+VVA+VS IYGLG P+ Y++ M+ L G +D+ +LRR ++QY R Sbjct: 133 HSATNALLTRRDVIVVATVSCIYGLGTPEEYIEQMVTLRRGAEMDRDVLLRRFVQMQYVR 192 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 ND F RGTFRVRG+ ++I P +++A+R+E F +E+E + PLTGQ+V I Sbjct: 193 NDVDFHRGTFRVRGDTVEIIPMY-EELAVRIEFFGDEIESIQTLHPLTGQVVREEEEMYI 251 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P +HYV ER+ +A+ I++EL R + L +KLLE QRL RT +DLEMM ++GYC Sbjct: 252 FPASHYVAGDERMGRAITTIEDELRERLQELESQDKLLEAQRLRMRTTYDLEMMQQMGYC 311 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +GIENYSR + GR G P L DY P D LLVVDESHVTIPQIG MY GD +RK TLVE Sbjct: 312 NGIENYSRHIDGRPAGSAPHCLLDYFPDDFLLVVDESHVTIPQIGAMYEGDMSRKRTLVE 371 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSA+DNRPLK++EF QT+Y+SATPG YEL ++ G V+Q++RPTGL+DP + Sbjct: 372 HGFRLPSAMDNRPLKWDEFLERIGQTVYLSATPGAYELGQADGY-VEQIIRPTGLVDPQV 430 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V+P Q+DDLL +IR R A +ERVLVTTLTKRMAEDLT+YL E G +V YLHSD+DT+ Sbjct: 431 VVKPTEGQIDDLLEQIRVRTAKDERVLVTTLTKRMAEDLTDYLLEAGVKVEYLHSDVDTL 490 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 R+E++R+LR G FDVLVGINLLREGLD+PEVSLVAILDADKEGFLRS SLIQTIGRAA Sbjct: 491 RRVELLRELRKGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSLIQTIGRAA 550 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 RNV+G+ +Y +T SM +AI ETERRR Q YNEEHGI PQ L K++ DI Sbjct: 551 RNVSGEVHMYAGNVTDSMRRAIEETERRRAVQIAYNEEHGIDPQPLRKRIADITDQLARE 610 Query: 604 AKTKAK---GRGKSRPI-----------------------VEPDNVPMDMSPKALQQKIH 637 A G G + P P + K L I Sbjct: 611 DADTADFLKGMGGVKSGFDFGMGHRGLSSLDRAPATGEGAAAPAVDPASLPAKDLADLIE 670 Query: 638 ELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 ++ M Q A +L+FE AA++RD++ +L++ Sbjct: 671 QMSQQMHQAAADLQFELAARLRDEVGELKKEL 702 >UniRef50_C2D6L8 UvrABC system protein B n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6L8_9ACTN Length = 760 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 356/698 (51%), Positives = 476/698 (68%), Gaps = 28/698 (4%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 +PF++ + F P GDQP AI L +G+ +D L +QTLLGVTGSGKTFT+AN+I Q+ T Sbjct: 38 QQPFQVVADFAPKGDQPRAINALTKGVMQDKLRYQTLLGVTGSGKTFTMANLIEQTQKTT 97 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +++ PNKTLAAQ+ EMK FP NAV YFVSYYDYYQPEAY+P +DT+IEKD+S+NE +E Sbjct: 98 LIIEPNKTLAAQVASEMKTLFPHNAVVYFVSYYDYYQPEAYIPQTDTYIEKDSSINEEVE 157 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 ++R T ++L RRDV+VVASVS IYG+G P Y + + +++ +R L ++Q Sbjct: 158 KLRHQTTSSLLSRRDVIVVASVSCIYGIGSPQDYAGLAPTIDKNTPLERDDFIRSLIDIQ 217 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RND RGTFRVRG+ +D+F + +RV F +E+E ++ FD +TG +S Sbjct: 218 YDRNDVDLIRGTFRVRGDCVDVFTPYGE-HPIRVSFFGDEIEMIAEFDEVTGDTLSQYDA 276 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I+P THYV+ R +I A+ I++EL AR + L +N LLE QRL QR +DLEM+ + Sbjct: 277 LPIWPATHYVSARPKINHAILTIRDELEARVQELKAHNMLLEAQRLQQRCSYDLEMLETM 336 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G+CSGIENYSR L GR PGE P TL DY P D L ++DESHV++PQI GMY GDR+RK T Sbjct: 337 GFCSGIENYSRHLDGRKPGEAPYTLIDYFPEDMLCIIDESHVSVPQIRGMYEGDRSRKIT 396 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LV++GFRLP ALDNRPL+++EFE PQ ++VSATPG+YEL S VV+QV+RPTGLLD Sbjct: 397 LVDHGFRLPCALDNRPLRYDEFEQRIPQFVFVSATPGDYELSVSQN-VVEQVIRPTGLLD 455 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P +E+RP Q+DDL EIR R +ERVLVTTLTK MAEDLTE+L + G +V Y+HSD Sbjct: 456 PRVEIRPTRGQIDDLADEIRTRVTKHERVLVTTLTKHMAEDLTEHLLDEGFKVNYMHSDT 515 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 T++R++IIR LR G DVLVGINLLREGLD+PEVSLVAILDADKEGFLR++RSLIQT+G Sbjct: 516 ATLDRIDIIRALRTGTLDVLVGINLLREGLDIPEVSLVAILDADKEGFLRNKRSLIQTMG 575 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN G I+Y D++T SM A+ ET+RRR Q +YN +H I PQ + K +VD+ + Sbjct: 576 RAARNAAGSVIMYADRMTDSMQIAVDETKRRRTLQMRYNAQHHIVPQTIKKSMVDVTSFI 635 Query: 601 QN-----IAKTKAKGRGKSRPIVEPDNVPMD--------------------MSPKALQQK 635 Q +K + G + DN M + + + Sbjct: 636 QAAHETLDSKQRKDGVFYTASGTLSDNNETHQPSKSSGENSATQLCSSLEGMPKEDVAKI 695 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 673 + L+ M+ + +++FE AA++RDQ+ +++ + S Sbjct: 696 LGALQDEMLAASASMDFERAAKLRDQIVEVQSVLEGLS 733 >UniRef50_B7AJE3 UvrABC system protein B n=5 Tax=Bacteroides RepID=B7AJE3_9BACE Length = 718 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 370/681 (54%), Positives = 484/681 (71%), Gaps = 15/681 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 F+L SA+ P+GDQPEAI +L EG+ +G+ QTLLGVTGSGKTFTIANVIA++ +PT++ Sbjct: 34 NKFELTSAYHPTGDQPEAIAQLTEGVREGVPAQTLLGVTGSGKTFTIANVIANINKPTLI 93 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 L+ NKTLAAQLY E K FFP NAVEY+VSYYDYYQPEAY+PSSDT+IEKD ++N+ I+++ Sbjct: 94 LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKL 153 Query: 123 RLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RL+AT A+L R DVVVV+SVS IYG+G+P + ++ + G + LRRL + Y Sbjct: 154 RLAATSALLSGRKDVVVVSSVSCIYGMGNPADFYNNVIEVQQGKNYSRNVFLRRLVDSLY 213 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND RG FRV+G+ +DI+ A +D++ LR+ + +E++ + DP++G ++ + Sbjct: 214 VRNDIDLNRGNFRVKGDTVDIYLAYADNL-LRIVFWGDEIDSIEEVDPVSGVTIARFDAY 272 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 IYP ++T +E ++A+ EI+++L + + + E +RL +R +D+EMM ELG Sbjct: 273 KIYPANLFMTTKEATLRAIHEIEDDLHKQVQWFENEGRPFEAKRLQERVTYDMEMMRELG 332 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 +CSGIENYSR+ GR G P L D+ P D L+V+DESHV++PQI MY GDRARK L Sbjct: 333 HCSGIENYSRYFDGRAAGTRPYCLLDFFPEDFLIVIDESHVSVPQIRAMYGGDRARKTNL 392 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VEYGFRLP+A+DNRPLKFEEFE++A Q IYVSATP +YEL +S G VV+QV+RPTGLLDP Sbjct: 393 VEYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELMQSEGIVVEQVIRPTGLLDP 452 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 IIEVRP Q+DDL+ EI+ R NER L+TTLTKRMAE+LTEYL + + Y+HSD+D Sbjct: 453 IIEVRPSHNQIDDLMEEIQLRIERNERTLITTLTKRMAEELTEYLLNNNVKCNYIHSDVD 512 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 T+ER+ I+ DLR GE+DVLVG+NLLREGLD+PEVSLVAILDADKEGFLRS RSL QT GR Sbjct: 513 TLERVRIMSDLREGEYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGR 572 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV-----DI 596 AARNVNG I+Y DKIT SM I ET RRREKQ KYNEEHGITPQ + K Sbjct: 573 AARNVNGMVIMYADKITESMQLTIDETNRRREKQLKYNEEHGITPQQIKKAKSLNVFAGT 632 Query: 597 LALGQNIAKTKAKGRGKSRPIVEPDNVPM--------DMSPKALQQKIHELEGLMMQHAQ 648 ++ + RP VE ++ M MS L++ I + LM + A+ Sbjct: 633 EGFAESGTGKEKLSGNAPRPYVEQESTSMLAADPIVQYMSRNQLEKSIERTKKLMQEAAK 692 Query: 649 NLEFEEAAQIRDQLHQLRELF 669 L+F EAAQ RD++ ++ EL Sbjct: 693 KLDFIEAAQYRDEVLKMEELL 713 >UniRef50_C9RMZ8 UvrABC system protein B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMZ8_FIBSS Length = 732 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 364/690 (52%), Positives = 481/690 (69%), Gaps = 30/690 (4%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F L S + +GDQP+AI L EG ++G QTLLGVTGSGKTFT+ANVI ++ +PT++L Sbjct: 42 FDLVSPYGAAGDQPKAIEELTEGFKNGEQFQTLLGVTGSGKTFTMANVIKNVGKPTLILT 101 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLY E K FFP NAVEYFVSYYDY+QPEAY+P +DTFIEKDAS+N+ I+++RL Sbjct: 102 HNKTLAAQLYQEFKSFFPNNAVEYFVSYYDYFQPEAYIPHTDTFIEKDASINDEIDKLRL 161 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 AT +L RRDV++VASVS IYGLG P Y +M+ + G I D+ ILR L +QY+RN Sbjct: 162 RATANLLTRRDVIIVASVSCIYGLGSPSEYFDLMVRIKKGDIYDRDKILRDLVHIQYSRN 221 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D + RG+FRVRG+VI++ P+ +D LR+ELF +EV+RL F+ +TG+++ + TI Sbjct: 222 DFSLDRGSFRVRGDVIEVHPSYDEDG-LRIELFGDEVDRLYRFNIVTGEVIKEVEELTIA 280 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P H+VT E ++ I++EL R L + K+LE RL+ RT++D+EM+ E G C+ Sbjct: 281 PAKHFVTKEENRAGMLQRIQKELTDRLAELDKEGKVLESARLSSRTRYDMEMLRETGMCN 340 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR + R PG P TL DY D LL++DESHV+IPQ+GGM GD++RK TLV+Y Sbjct: 341 GIENYSRIIEDRAPGTRPFTLIDYFGDDWLLMIDESHVSIPQVGGMAEGDKSRKTTLVQY 400 Query: 365 GFRLPSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 GFRLP ALDNRP+ F EFE + P Q ++VSATPG+YEL+K+ G V +Q+ RPTGLLDP I Sbjct: 401 GFRLPCALDNRPMNFAEFEYMYPKQVLFVSATPGDYELKKTNGVVTEQINRPTGLLDPKI 460 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 E+ P+ Q+D LL I + +RVLVTTLTK+MA+DLTE+ E G R +YLHSDI T+ Sbjct: 461 ELFPIQGQMDVLLYRIEEVVKNGDRVLVTTLTKKMAQDLTEFFIEAGVRAKYLHSDIKTL 520 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER E+IR LR GE+DVLVGINLLREGLD+PEVS+VAILDADKEGFLR+ RSLIQT+GRA+ Sbjct: 521 ERHELIRGLRSGEYDVLVGINLLREGLDLPEVSMVAILDADKEGFLRNYRSLIQTMGRAS 580 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD-------I 596 RNVNG +L+ D +T S+ KAI ET RRR Q+++N+EHGITP+ + +K+ + + Sbjct: 581 RNVNGTVLLFADNMTESLQKAIDETNRRRGLQEEFNKEHGITPKSVTRKIEEDLRIIDPL 640 Query: 597 LALGQNIAKTKAKGRGK---------------------SRPIVEPDNVPMDMSPKALQQK 635 +G + ++ + K R P D KA + K Sbjct: 641 GDIGDDTTDSEDDWKDKPGIRPMEPLQPSNYRRKTKDERRKKAAAPGAPPDKPSKASESK 700 Query: 636 IHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +LE M + A L+FEEAA+IRD + L Sbjct: 701 LADLERQMKEAAARLDFEEAARIRDIIRSL 730 >UniRef50_A1BI09 UvrABC system protein B n=64 Tax=Bacteria RepID=UVRB_CHLPD Length = 685 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 351/666 (52%), Positives = 471/666 (70%), Gaps = 6/666 (0%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 ++L S + P GDQP+AI L +G+ G QTLLGVTGSGKTFT++NVIA + +P +V++ Sbjct: 9 YRLVSEYDPKGDQPKAIMALTDGVLRGDRWQTLLGVTGSGKTFTVSNVIAQVDKPVLVMS 68 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQLYGE+++FFP+NAVEYFVSYYD+YQPEAY+P+ D +I KD +N+ IE++RL Sbjct: 69 HNKTLAAQLYGELRQFFPDNAVEYFVSYYDFYQPEAYLPALDKYIAKDLRINDEIERLRL 128 Query: 125 SATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 T ++L R DV+VV+SVS IYGLG PD + ++ L GM D+ L+ L L Y R Sbjct: 129 KTTSSLLSGRRDVIVVSSVSCIYGLGSPDDWKAQIVELRSGMEKDRDLFLQELVSLHYIR 188 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +D G FRVRG++ID+ PA +++ALRVE F E+E L F+ +G+++ I Sbjct: 189 DDVDPGPGKFRVRGDIIDLVPAH-EELALRVEFFGSEIESLQTFNIQSGELLGKDTYAFI 247 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP ++ E + QAM I+ ELA R L +++L+E +RL +RT++DLEMM ELGYC Sbjct: 248 YPARQFIAEAETLKQAMVAIENELAGRLNELRRDDRLVEARRLEERTRYDLEMMKELGYC 307 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 SGIENYSR L+GR GE P L DY P D L++VDESHVT+PQI GMY GDR+RK LVE Sbjct: 308 SGIENYSRHLAGRSEGERPYCLLDYFPEDFLVIVDESHVTLPQIRGMYGGDRSRKAILVE 367 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +GFRLPSALDNRPL+FEEF + PQ I VSATPG+ ELE+ GG VV+Q+VRPTGLLDP + Sbjct: 368 HGFRLPSALDNRPLRFEEFTEIVPQVICVSATPGDLELERCGGVVVEQLVRPTGLLDPPV 427 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EVRPV Q+DDLL+EIR+ A + LV TLTKRM+EDL +Y ++ G R RYLHS+I ++ Sbjct: 428 EVRPVKGQIDDLLAEIRRHTAKGHKALVMTLTKRMSEDLDDYFKKVGIRSRYLHSEIKSL 487 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER++I+R+LR G+ +VLVG+NLLREGLD+PEVSLVAILDADKEGFLR+ RSL+Q GRAA Sbjct: 488 ERIQILRELRAGDVEVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNTRSLMQIAGRAA 547 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG--- 600 RNV+G + Y D +T S+ + + ET RRR QQ YNE HGITP+ + K + +L Sbjct: 548 RNVDGFVVFYADVLTRSIMEVLDETARRRTVQQLYNETHGITPRSIRKSLDQVLNTTSVA 607 Query: 601 -QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + ++ V+ + +P+ + EL M + A +E+E+AA +R Sbjct: 608 DAEERYRRKRFGLGAKSGVQSAALLHSFTPEESYAMVAELRLEMNEAAIQMEYEKAAYLR 667 Query: 660 DQLHQL 665 D++ +L Sbjct: 668 DEIARL 673 >UniRef50_B3EMK1 UvrABC system protein B n=279 Tax=cellular organisms RepID=UVRB_CHLPB Length = 690 Score = 537 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 363/673 (53%), Positives = 476/673 (70%), Gaps = 6/673 (0%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 + F+L S+++P GDQP+AI L +G+ DG +Q LLGVTGSGKTFT+ANVIA++ +P + Sbjct: 6 EQVFRLESSYEPEGDQPQAIEALRQGVMDGQTNQVLLGVTGSGKTFTMANVIAEVNKPVL 65 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +++ NKTLAAQLYGE+K+FFP NAVEYF+SYYD+YQPEAY+P+ D +I KD +N+ IE+ Sbjct: 66 LISHNKTLAAQLYGELKQFFPHNAVEYFISYYDFYQPEAYIPTMDKYIAKDLKINDEIER 125 Query: 122 MRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 +RL AT ++L R DV+VV+SVS IYGLG P+ + ++ L V M ++ + L+ L L Sbjct: 126 LRLKATSSLLSGRKDVIVVSSVSCIYGLGAPEDWKAQIIELRVNMEKERDSFLQELISLH 185 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 + R+D G FRVRG+VID+ P ++ ALRVE F +E+ERL LFD TG+I Sbjct: 186 FVRDDSDLAPGKFRVRGDVIDLVPMH-EESALRVEFFGDEIERLQLFDHTTGEIFEDEEY 244 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 IYP +V RE++ QAM I++ELA R V K +E +R+ +RT++DLEM+ EL Sbjct: 245 AFIYPARQFVAGREKLQQAMLGIEDELAHRLNVFRSGEKFVEARRIEERTRYDLEMIKEL 304 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GYCSGIENYSR LSGR GE P L DY P D L++VDESHVT PQI GMY GDR+RK Sbjct: 305 GYCSGIENYSRHLSGRKAGERPYCLLDYFPEDYLVIVDESHVTFPQIRGMYAGDRSRKTI 364 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEFE + PQ I VSATPG+YEL +SGG VV+Q+VRPTGLLD Sbjct: 365 LVEYGFRLPSALDNRPLRFEEFETMVPQLISVSATPGDYELRRSGGSVVEQLVRPTGLLD 424 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 P I VRPV Q+DDLL EIR+ + LV TLTKRM+EDL +YL + G R RYLHS+I Sbjct: 425 PEIVVRPVNGQIDDLLEEIRKHTGKGFKSLVMTLTKRMSEDLHDYLRKAGLRTRYLHSEI 484 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ++ERM+I+R+LR GE D+LVG+NLLREGLD+PEVSLVAILDADKEGFLR +SL+Q G Sbjct: 485 KSLERMQILRELRTGEIDILVGVNLLREGLDLPEVSLVAILDADKEGFLRDSKSLMQIAG 544 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARNV G + Y D+IT SM I ETERRR Q+K+NE+HG+ P + K V +L Sbjct: 545 RAARNVEGMVVFYADRITASMRYVIDETERRRSVQRKFNEDHGVIPASIVKSVDQVLDTT 604 Query: 601 ----QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 + + + R +++ + + L EL M + A+++EFE+AA Sbjct: 605 GVADAEDRFRRRRFGLEQRSRRGIEDLVGSLKREDLYAMAEELRLEMQEAAESMEFEKAA 664 Query: 657 QIRDQLHQLRELF 669 +RD++ +L + Sbjct: 665 YLRDEVTKLEDAA 677 >UniRef50_B2S264 UvrABC system protein B n=40 Tax=Bacteria RepID=UVRB_TREPS Length = 668 Score = 530 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 346/666 (51%), Positives = 459/666 (68%), Gaps = 5/666 (0%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K FKL+++F+P+GDQ AI L GL G QTL GVTGSGKTFT+ANVIA +Q+PT+V Sbjct: 2 KEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLV 61 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 ++ NKTL+AQLY E K FFP+NAVEYFVSYYDYYQPE+YVP+ D +IEKDAS+N I +M Sbjct: 62 ISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRM 121 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLSAT +++ERRDV+VVA+VS IYGLG P+ + + +H+ V +D + R+L LQY Sbjct: 122 RLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEVNQCLDLEDLKRQLVSLQYE 181 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 RND + G FRVRG+VI+IFPA ++ R+E + V R+ P++G ++ T Sbjct: 182 RNDAVLECGRFRVRGDVIEIFPAYLEEF-YRIECDWDRVVRIRRIHPVSGAVLREFEELT 240 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +YP H+V + I +AM+ I++EL R L + NKL E RL RT++DLEM+ E+GY Sbjct: 241 VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY 300 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 C GIENYS ++GR GEPP TL Y P D +L VDESHVT+PQ+G MY GDR RK+ L+ Sbjct: 301 CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLI 360 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 ++GFRLP A DNRPLK EFEAL Q +++SATPG E +S +V+Q++RPTGLLDP Sbjct: 361 DFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERTQS-VQIVEQLIRPTGLLDPC 419 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT 482 IEVR Q++D+ ++ +A NER LV TLTK+MAEDLT+Y G R +Y+HS+I+T Sbjct: 420 IEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSEIET 479 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 +ER+EI+ LR GE +VLVGINLLREG+D+PEV+ +AILDA+ GFLRS SLIQ IGRA Sbjct: 480 IERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRA 539 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ARN G ++Y D I+ +M +AI ET RRR+ Q YN HGITP+ + K + DIL Q Sbjct: 540 ARNARGTVVMYADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQE 599 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 + K A+ + +V + K + + L M A+ L FEEAA IRD++ Sbjct: 600 VKKDAARVQVAPLLRAADADVRTHAARK---KMVQALRLHMKVCARELRFEEAALIRDKI 656 Query: 663 HQLREL 668 QL+ Sbjct: 657 LQLQRQ 662 >UniRef50_D1Y4I0 UvrABC system protein B n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4I0_9BACT Length = 683 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 345/666 (51%), Positives = 464/666 (69%), Gaps = 16/666 (2%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTM 61 ++ FKL++ + PSGDQP+AI L EGLE G TL+GVTGSGKTFT+ANV+A RPT+ Sbjct: 3 TEKFKLHAPWPPSGDQPQAIESLLEGLERGEKCSTLMGVTGSGKTFTVANVVAKYDRPTL 62 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 VLA NKTLAAQL+ E K FFPENAV Y+VSYYDYYQPEAY+PSSDTFIEKDAS+N IE+ Sbjct: 63 VLAHNKTLAAQLFSEFKRFFPENAVHYYVSYYDYYQPEAYIPSSDTFIEKDASINTQIER 122 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 MRL+ TK+++ERRDV+VVASVS IYG+G Y +++ +VG ++R+ L + Y Sbjct: 123 MRLATTKSLIERRDVIVVASVSCIYGMGKRKNYEDAIVNFSVGERWNRRSFQEALMKAYY 182 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 RND Q G +RVRG+V++++P SD LR FDEE+E + DP++G+ + Sbjct: 183 ERNDFDLQPGKYRVRGDVLEVYPVYSDAT-LRFSFFDEELESIEEVDPVSGRSTARKQHV 241 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 +++P HYVT I ++M++IK E+ + K LE +RL RT++D+EM+ E G Sbjct: 242 SVFPAQHYVTSDGAIAESMDKIKREMELQVGRFKSEGKYLEAERLGSRTRYDMEMLAEAG 301 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 YCSGIENYSR+L GR GE P TL D+ P D L++VDESH+T+PQ+ GM+ GDRARKE L Sbjct: 302 YCSGIENYSRYLDGRAEGEQPGTLIDFFPPDFLMIVDESHITLPQVRGMFNGDRARKEVL 361 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 VE+GFRLPS LDNRPLK+ EFE + + SATPG++EL S VV+Q++RPTG+ DP Sbjct: 362 VEHGFRLPSCLDNRPLKWHEFERYMQRVVCCSATPGDWELAHSRR-VVEQLIRPTGIADP 420 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 +EVR Q+DDLL+EI++ R LVTTLTK+ AE+L Y+ + Y+HS+++ Sbjct: 421 EVEVRKATGQIDDLLAEIQKVRGAGGRCLVTTLTKKGAEELAGYMRTLRVKSEYIHSELN 480 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ER E I LR G+ +VL+G+NLLREG+DMPEV+LVAILDAD+EGFLRS RSL+Q +GR Sbjct: 481 AFERAEEINHLRSGDIEVLIGVNLLREGIDMPEVTLVAILDADREGFLRSYRSLVQVMGR 540 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 AARNV+ + ILY D++T S+ +A+GE++RRRE Q KYNEEH I PQ ++K + +L + Sbjct: 541 AARNVDSRVILYADEVTDSIREAVGESKRRREAQLKYNEEHHIVPQTIHKSIERMLPEVE 600 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 A +AK + + I DN LE LM + + L+FE+AA+IRD Sbjct: 601 FEAAPEAKNKRAQQHIEHMDN--------------EALEKLMWEAVEKLQFEKAAKIRDM 646 Query: 662 LHQLRE 667 + + E Sbjct: 647 IQAMEE 652 >UniRef50_B3PLX9 UvrABC system protein B n=13 Tax=Mycoplasma RepID=UVRB_MYCA5 Length = 660 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 314/665 (47%), Positives = 448/665 (67%), Gaps = 11/665 (1%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M + F L+S F PSGDQPEAI+ L +G+++ HQ LLGVTGSGKTFTIANVIA L RP+ Sbjct: 1 MEEKFVLHSPFAPSGDQPEAIKALVDGIDEKKEHQVLLGVTGSGKTFTIANVIAQLNRPS 60 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++++ NKTLA+QLY E+K FP+N VEYFVSY+D+Y+PEAY+P SD +IEK + N+ +E Sbjct: 61 LIISHNKTLASQLYSELKALFPDNRVEYFVSYFDFYKPEAYIPKSDLYIEKTSKNNKELE 120 Query: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 MR+SA A+ R+D +VVASV+AIYG +P Y + + VGM ID++++L +L+++ Sbjct: 121 AMRMSAINALSIRKDTIVVASVAAIYGESNPKHYRQNFFPIEVGMQIDRKSLLLKLSQIG 180 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y RN +G F V+G+ I+I P D +R+++F E+E ++L DPL+ + + Sbjct: 181 YERNRMELNKGQFDVKGDSIEICPGYVSDTNIRIDMFGNEIEAITLIDPLSKNVEGSRKN 240 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 T++P T Y I ++ IK+EL+ R + ++KLLE QR+ RT DL+ + E Sbjct: 241 MTLFPATTYTVHENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDSLLEF 300 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 GY SGIENYSR+L GR PG+ P TLFDYLP D ++ +DESH+ IPQ+ GM+ GDRARK + Sbjct: 301 GYTSGIENYSRYLDGRAPGQRPYTLFDYLPDDSVIFIDESHLMIPQLHGMHNGDRARKLS 360 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 LVEYGFRLPSALDNRPL+FEEF IY+SATPG+YEL+ + G++V Q +RPTGLLD Sbjct: 361 LVEYGFRLPSALDNRPLRFEEFAEFKFPKIYISATPGDYELDLTHGEIVTQYIRPTGLLD 420 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 PIIE+ Q++D+ ++++ A ER L+ T TK+ AE+L+ +L+E + Y+H Sbjct: 421 PIIEIHSRDNQIEDIYDHLKEQIAKKERTLILTTTKKNAEELSLFLQEKKIKSAYIHDRF 480 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 ER EI++ LR+G+FDV+VGINLL+EG+D+PEVSL+ +L+AD G +R RSLIQ +G Sbjct: 481 KIFERNEILKGLRMGKFDVVVGINLLKEGIDLPEVSLICVLNADSTGLMRDTRSLIQIVG 540 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 RAARN +GK I Y ++IT SM + I + +R+ Q +YNE+H I P+ + K + + G Sbjct: 541 RAARNDHGKVIFYANEITSSMRECIEDNLFKRKIQSEYNEKHNIIPKTIVKPIAPPIQNG 600 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 S+ E D M + K + Q + + M Q A+ +FEEA +IRD Sbjct: 601 -------ILSEDHSKYYGEKDLSQMKHNKKFIDQMVRK----MTQLAKANKFEEAIEIRD 649 Query: 661 QLHQL 665 L ++ Sbjct: 650 YLIEI 654 >UniRef50_B2ULI9 UvrABC system protein B n=8 Tax=Bacteria RepID=B2ULI9_AKKM8 Length = 715 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 350/717 (48%), Positives = 469/717 (65%), Gaps = 68/717 (9%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F+LNS+FKPSGDQ +AI +L + LE G HQ LLGVTGSGKTFT+AN+IA + RPT+V++ Sbjct: 4 FELNSSFKPSGDQEQAIGKLLKSLEAGNKHQGLLGVTGSGKTFTMANLIARMNRPTLVIS 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL+ E+K FFP NAV+Y+VSY+DYYQPEAY+ SSDT+IEKD+++N+ ++++ L Sbjct: 64 HNKTLAAQLHSELKSFFPNNAVDYYVSYFDYYQPEAYIASSDTYIEKDSAINDELDRLSL 123 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +A +++ RRDV+VVASVS IYGL P+ Y + L + G ++D+ L+ L E + R Sbjct: 124 NAMNSLMTRRDVIVVASVSCIYGLSTPEDYRNLTLRMREGDVMDRDVFLKHLVERLFERQ 183 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 D F RGTFRVRGEV+++FPA S+ A+RVE F +EVER+SL D TG++ + +T + Sbjct: 184 DFDFTRGTFRVRGEVVEVFPAYSEGEAIRVEFFGDEVERVSLIDSATGRVRERLGSYTFF 243 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P YV E+ A++ I+EEL R ++ +LLE QRL RT +DLE++ ELG+C Sbjct: 244 PAKQYVAAPEKRAAALKAIREELEDRVGWFEKHGRLLEAQRLKLRTDYDLELIEELGFCK 303 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIENYSR LSGR PG P TL D+ P D L ++DESHV +PQ+GGMY GDR+RK LVE+ Sbjct: 304 GIENYSRHLSGRLPGSAPSTLLDFFPKDSLTLIDESHVAVPQLGGMYEGDRSRKNILVEH 363 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV--------------- 409 GFRLPSALDNRPLKF EF Q +Y SATPG +EL D Sbjct: 364 GFRLPSALDNRPLKFHEFMERQNQIVYASATPGPFELVNCRADNKTYIPVRRAARSGEKA 423 Query: 410 -----------------------------DQVVRPTGLL-----------DPIIEVRPVA 429 D R T L+ +P I +RP+ Sbjct: 424 PEGFKGILFTSPKDIRVAPSPSTEPVEKFDPTRRSTPLIVEQIIRPTGLLEPKITIRPLK 483 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+D+ ++ +R A NERVLVTTLTK+ AEDLTEYL+ G +V Y+H+D+D +ER+EI+ Sbjct: 484 GQIDETIAMCNERVAKNERVLVTTLTKKTAEDLTEYLKGVGLKVSYIHADVDAIERVEIL 543 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 R LR + DVLVGINLLREGLD+PEVSLV ILDADKEGFLR+E SL+QT GRAAR++NG+ Sbjct: 544 RALRARKIDVLVGINLLREGLDLPEVSLVCILDADKEGFLRNETSLVQTAGRAARHLNGE 603 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 +L+ D +T S+ + + T+ RR Q+KYN EHGI PQ +++ Q K A+ Sbjct: 604 CVLFADVMTDSIKRLVELTDYRRGIQEKYNREHGIVPQTVSRS-------EQGQLKLYAE 656 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 +S + E D + L+++I LE M + A +LEFE AA IRD++ Q+R Sbjct: 657 DDEESFRVAE------DEAGYGLEERIARLETEMKEAASHLEFERAALIRDEIRQMR 707 >UniRef50_B1AIA9 UvrABC system protein B n=19 Tax=Mycoplasmataceae RepID=UVRB_UREP2 Length = 666 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 323/669 (48%), Positives = 431/669 (64%), Gaps = 17/669 (2%) Query: 3 KPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 K F+L S +KP+GDQ +AI + + G+ Q LLG TG+GKTF++ANVIA Q T+V Sbjct: 5 KKFELISDYKPAGDQQKAIDEMVNNINQGIQRQVLLGATGTGKTFSVANVIAKTQLKTLV 64 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 LA NKTLAAQL+ E+KE FP N VEYFVSY+DYYQPEAY P +DT+IEKD+ N IE M Sbjct: 65 LAHNKTLAAQLFAELKEMFPHNKVEYFVSYFDYYQPEAYKPITDTYIEKDSVTNAEIEMM 124 Query: 123 RLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYA 182 RLS ++ R DV+VVASV+ IY P + K L+L VG +I+ I +L +L Y Sbjct: 125 RLSTINSLATRNDVIVVASVACIYASVSPIEFTKKNLYLHVGELIEFEQIKYKLVQLGYE 184 Query: 183 RNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFT 242 R D GTFR+RG++I+I SD +R+ +F EVE + L DP+T I+S RF Sbjct: 185 RKDYDLVPGTFRIRGDLIEIMSGYSDKFKIRISMFGNEVESIDLCDPITNNIISKEQRFI 244 Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 + + Y+ R+ A+E IK EL R K L+NN+L+E QR+ QRT+ DLE + E G+ Sbjct: 245 LRSASEYIFDDSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGF 304 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKE 359 CSG+ENY R L R P + P T+FD+ D LL+VDESH+++PQ+ GM+ DR+RK+ Sbjct: 305 CSGVENYYRHLEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQ 364 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 TLVEYGFRLPSALDNRPL ++EF +TIYVSATP + E+ S +V Q+VRPTGLL Sbjct: 365 TLVEYGFRLPSALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL 424 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 DPIIE+R Q+DDL++E+ N+R +T +T RMAEDLT YL + YLH++ Sbjct: 425 DPIIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTKIKAAYLHNE 484 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + T+ER II LR G +D +VGINLLREGLD+PEV+ V I DADK GF RS++SLIQ I Sbjct: 485 LKTLERSVIINKLRKGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGFFRSDKSLIQII 544 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GRAARN +GK I+Y D IT +M AI ET+RRRE Q +N +H I P+ + K + + Sbjct: 545 GRAARNADGKVIMYADVITQAMQTAINETKRRREIQLAFNLKHNIIPKTIIKPIHE---- 600 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + + + + QKI EL+ M + A+ E+E AAQ R Sbjct: 601 ----DLSGHDYKQNAELYAAKASKNEY------NQKIKELKKKMEEAAKKREYEVAAQYR 650 Query: 660 DQLHQLREL 668 D + +L + Sbjct: 651 DMIVELEAI 659 >UniRef50_B7FZX9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FZX9_PHATR Length = 615 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 280/606 (46%), Positives = 385/606 (63%), Gaps = 23/606 (3%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 F++ + + P+GDQPEAI +L L+ G L G+TG+GKT +A++IA+ RPT+VL Sbjct: 1 FRVTAKYTPTGDQPEAIAQLTHQLQRGDRFSILRGITGTGKTLVMAHLIANHGRPTLVLC 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 NKTLAAQL E++ F +NAVE FVSYY++Y PE++V ++ +I K +SVN I+ +R Sbjct: 61 HNKTLAAQLARELRSFLGDNAVELFVSYYNHYVPESFVEATGKYIAKKSSVNAEIDVLRH 120 Query: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ-RAILRRLAELQYAR 183 AT+A+L R DVVVVASVS IYGLG P YL +G ++ +L +L + + Sbjct: 121 RATRALLTRNDVVVVASVSCIYGLGLPKEYLDASWAFQLGDVVSWNDDVLTKLDTMLFEH 180 Query: 184 N--DQAFQRGTFRVRGE------VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV 235 D F+RGT++ ++++P + +R+E V ++ D + + + Sbjct: 181 VVDDDLFERGTYQSSKSDEGVTTYLNVWPTH-EKCPMRIEF--ASVGDGAVKDGMVVRAI 237 Query: 236 ST--------IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLT 287 + I+P H+VT +R+ QA I+EEL R + LL K +E RL Sbjct: 238 QEGTPSGMKPMSSARIFPAKHHVTSDDRLEQACFAIEEELQTRVQELLAEGKRIEADRLQ 297 Query: 288 QRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDESHVTI 344 QR D+ MM E G+CSG ENYSR L+GR G PP TL DY+ D LL+VDESHVT+ Sbjct: 298 QRVLNDVLMMRETGFCSGGENYSRHLAGREAGSPPDTLMDYMNLNTRDWLLLVDESHVTL 357 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 PQ+ MY GD+ARK LV++G+RLPSALDNRPLK EEF + QT++VSATP EL K+ Sbjct: 358 PQLKAMYGGDQARKHRLVKHGYRLPSALDNRPLKEEEFWSNVQQTVFVSATPAKQELGKA 417 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 V+ ++RPT + DP IEVR Q+D+LL+E+R R +R LV TLTKR AEDL+ Sbjct: 418 EYPPVEMMIRPTYVCDPEIEVRSPEGQLDNLLAELRIRVDRKQRALVVTLTKRDAEDLSS 477 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 YL EHG Y+HS + T ER + +R L++GE D LVGIN LREGLD+P+VSLVA+L+AD Sbjct: 478 YLIEHGISSTYIHSGLSTNERSDALRALQMGEIDCLVGINCLREGLDLPQVSLVAVLNAD 537 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 EGFLRSE +L+Q +GRAARN GKAI Y + T +M + I +T+ RREKQ YN ++ Sbjct: 538 SEGFLRSETALLQIVGRAARNTEGKAIFYAKRTTEAMQRCIDDTDSRREKQTAYNAQNNC 597 Query: 585 TPQGLN 590 + N Sbjct: 598 VMKSTN 603 >UniRef50_A4SAV4 Predicted protein (Fragment) n=4 Tax=cellular organisms RepID=A4SAV4_OSTLU Length = 690 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 256/614 (41%), Positives = 357/614 (58%), Gaps = 43/614 (7%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVL 63 + + F+PSGDQP AI R +E L D L G TG+GKT+ +ANV+A ++P +V+ Sbjct: 71 NGVRAPFEPSGDQPSAIERCKELLSDRDRKFVCLRGATGTGKTYVVANVLAAQRKPALVV 130 Query: 64 APNKTLAAQLYGEMKEFFPEN-AVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 PNKTLAAQ+ E++ + E+ VE FVS++ Y PE+Y S+ + EK ++++ ++ + Sbjct: 131 VPNKTLAAQVARELRAYLGESHRVELFVSHFSVYVPESY--SNGRYTEKRSAIDSDLDAL 188 Query: 123 RLSATKAMLE-RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGM---IIDQRAILRRL-A 177 R AT+A++E + VVVASVS +YGLG P Y+ L + +G + +L Sbjct: 189 RHRATRALVEPGKTPVVVASVSCLYGLGLPTDYVDAALTIEIGASASTFGIDGVEDKLRD 248 Query: 178 ELQYARN--DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP----LT 231 +L Y R +RG ++ A DD + ++ +E D Sbjct: 249 DLLYERVMPYMDIERGQYKTTA-------APDDDNCFTITIWPPYLES--ALDVRVRGDD 299 Query: 232 GQIVSTIPR-------FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 G +V+ R TI+P+ HY+TP ER+ +A+ IK EL + K L +E Sbjct: 300 GVVVACEARGRRVDLPLTIWPRVHYITPAERLQRALVSIKAELDEQTKKLRAEGCAIEAD 359 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP--------ADGLLV 336 RL QRT DL ++ ELG+C G E+YSR L P EPP TL DY D LLV Sbjct: 360 RLEQRTNADLTLLRELGWCPGAEHYSRHLRCAKPEEPPVTLLDYFSYSADSQTRRDWLLV 419 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 DESHV +PQ+ M+ GDR+RK LV G+RLPSALDNRPL EEF PQ + VSATP Sbjct: 420 ADESHVMLPQLRAMHGGDRSRKTALVGAGYRLPSALDNRPLMSEEFWQRVPQALLVSATP 479 Query: 397 GN----YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 G+ + KS +VD VVRP+G+LDP + V Q++ L + ++A I ER LV Sbjct: 480 GDIETEWVGGKSSDAMVDMVVRPSGVLDPPVHVVGKENQLEALAQRVNEKAKIGERSLVC 539 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 LTK EDL+ YL HG R ++HS++ +R E + L+ GE D +VG LLREGLD+ Sbjct: 540 VLTKADTEDLSMYLNAHGVRADWVHSELTAPQRAEKLSKLQQGELDCIVGAQLLREGLDL 599 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRR 572 P VSLVAILDAD GF+RS RSL+Q GRAARN NG+ +L+ D IT +M + + E +RRR Sbjct: 600 PSVSLVAILDADIPGFMRSARSLMQMAGRAARNKNGECVLFADSITAAMKEMMNEVDRRR 659 Query: 573 EKQQKYNEEHGITP 586 KQ K+N ++ + P Sbjct: 660 VKQHKHNVDNNLVP 673 >UniRef50_C1EFA4 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFA4_9CHLO Length = 1672 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 266/661 (40%), Positives = 365/661 (55%), Gaps = 85/661 (12%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGL-EDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMV 62 L + F P+GDQP AI + L +D L G TG+GKTF +ANVI +PT+V Sbjct: 71 SLRAPFAPAGDQPTAISECVKHLRDDNARFACLRGATGTGKTFVVANVIDTIARDKPTLV 130 Query: 63 LAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 + PNKTLAAQ+ E++ + + + VE FVS++ Y PE++ S ++EK ++++ +++ Sbjct: 131 VVPNKTLAAQVARELRAYLRDTHRVELFVSHFSLYVPESF--SRGRYVEKRSAIDPNLDA 188 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIID---QRAILRRLAE 178 +R AT+A++E +VVVVASVS +YG+G P Y+ L L + A+ RL E Sbjct: 189 LRHRATRALVESDNVVVVASVSCLYGMGMPADYVDARLVLEPNASHGHGGRDALGARLTE 248 Query: 179 -LQYA-------------RNDQAFQR---GTFRV-----RGEVID---IFPAESDDIALR 213 L Y +D R G + RG + ++P +D L+ Sbjct: 249 GLLYEPAGAGAGGESPAPHDDVVADRVMRGQWAWGPVGIRGSELRRLVVWPPY-EDSPLQ 307 Query: 214 VELF--DEEVERLSLFDPL-TGQ--------IVSTI----------PRFTIYPKTHYVTP 252 +L V L P T + ++ + R T++P+ H++TP Sbjct: 308 FDLDKEGRLVGFLRT--PQGTNRDGAKRSAYVLEDVCNPNPLPPPPQRVTLWPRQHHITP 365 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 ER+ A I EL R L N +E +RL QRT D+ ++NELG+C G E+YSR Sbjct: 366 PERLKLATAAIGRELRERCAELRANGHGMEAERLEQRTNADVALLNELGWCPGAEHYSRH 425 Query: 313 LSGRGPGEPPPTLFDYLP-------------------------ADGLLVVDESHVTIPQI 347 L GR GEPP TL DYL LLV DESHV +PQ+ Sbjct: 426 LGGRAEGEPPVTLLDYLNFNTSDPPTRPPGAGAGAGADARARHRGWLLVADESHVMLPQL 485 Query: 348 GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD 407 M+ GDR+RK LV G+RLPSALDNRPL FEEF PQ + VSATPGN E E Sbjct: 486 RAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFEEFWERVPQALLVSATPGNVENEWCQSR 545 Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G++DP I++ P A Q+ L + +R+RAA E LV LTK EDL YL Sbjct: 546 MVDMVVRPSGVVDPPIKIFPRANQLPQLAAAVRERAARGEASLVCALTKADCEDLAGYLN 605 Query: 468 EH-GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E G R +LHS++ +R E ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 606 EIGGCRADWLHSELTAPQRAEKLQALQAGEIDVLVGAQLLREGLDVPQVSLVAVLDAGVP 665 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSL+Q GRAARN G+ L+ D T ++ A+ E RRREKQ+ +NE +GI Sbjct: 666 GFMRSARSLMQMHGRAARNARGECHLFADAPFTDAINDAVAEVSRRREKQRDFNERNGIV 725 Query: 586 P 586 P Sbjct: 726 P 726 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 354 bits (909), Expect = 5e-96, Method: Composition-based stats. Identities = 118/655 (18%), Positives = 235/655 (35%), Gaps = 54/655 (8%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L+ Q + L + G Q + G++ S +T +A + L P V+ + Sbjct: 6 LSGNLFEYIAQTTEFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHS 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++ +++ P+ V F P+++ + + + + RL Sbjct: 66 IQQARRIAEDLQVLLPDEEVLSF-------------PATEVMPYEVLTSSHELLAQRLDV 112 Query: 127 TKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V VV ++ A+ L P + + L VG ++ I RL L Y R Sbjct: 113 LSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVGCRMELSHIQERLHYLGYQRTP 172 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G + +RG ++D++P + + R+E FD+E++ + LFD T + R+ P Sbjct: 173 MVEAPGQYSLRGGILDVYPL-TRSLPARIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGP 231 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + E + Q E+++E A R+ LL++ RL + LE ++E + G Sbjct: 232 AREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEG 291 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E + F +LF YL + ++ DE + L+E G Sbjct: 292 LEQFQNFFY-----PDQVSLFSYLHPETIVFWDEPTRLKESAEAKEQEISETFVHLLEAG 346 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LP+ + + E LA + A ++V + + Sbjct: 347 SVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKKI---------ERVTVEDTIQFNAKNM 397 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 P ++D L E++ VL+ + + + + L ++G + + Sbjct: 398 HPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALRDYGVEAQPVPG------- 450 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I +L G V VG+ L G ++ + LV I D + G + R + Sbjct: 451 --IDAELHPGT--VAVGVGQLEAGFELVQARLVLITDLEIFGREKRP-----RKPRKSAR 501 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + D + R +K + G++K + I G++ Sbjct: 502 EGQRIDSFVDLALGDYVVHVNHGIGRYMGVEK------LEVGGVHKDYLVIRYAGEDRLY 555 Query: 606 TKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V + V + + +++ + + A +L AA+ Sbjct: 556 VPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAAR 610 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 106/294 (36%), Gaps = 30/294 (10%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 + +SATP L S + D + T D V +L+ E +R+ Sbjct: 781 KENVDVLTLSATPIPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRE 840 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V + + L R + H + + +++ D GE+D+L Sbjct: 841 LNRGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDIL 900 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P V+ + + AD G + L Q GR R+ + Y T Sbjct: 901 VCTTIIETGLDIPNVNTLIVDGADLMGLSQ----LYQLRGRVGRSNR---LAYA-FFTYR 952 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVE 619 K + E +R + E G G + D+ G N+ + G + Sbjct: 953 KDKVLTEVAEKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHG--------Q 1001 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQLR 666 +V D+ + L++ I EL+G + A F + D L +++ Sbjct: 1002 MASVGFDLYCRLLEEAIQELKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQ 1055 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 6/199 (3%) Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + + + A + Q + A P Sbjct: 578 YRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESKPGYAYSADTPWQKEFEEAFPYEET 637 Query: 401 LEKSGGDV-VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT---- 455 +++ V + +D ++ + + + + ++V + T Sbjct: 638 PDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIRAAFKAVQDGKQVAILVPTTILA 697 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL-REGLDMPE 514 ++ E + RV L E+ + L+ GE D+++G + L + + Sbjct: 698 QQHYNTFRERFSGYPVRVDVLSRFRSPKEQKASLEGLKSGEVDIVIGTHRLVSNDVSFKD 757 Query: 515 VSLVAILDADKEGFLRSER 533 + L+ I + + G E+ Sbjct: 758 LGLLIIDEEQRFGVAHKEK 776 >UniRef50_A5D636 Helicase subunit of the DNA excision repair complex n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D636_PELTS Length = 541 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 120/550 (21%), Positives = 209/550 (38%), Gaps = 44/550 (8%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAP 65 + KP PE I L GLE+ Q + G++GS ++ A + P +V+ P Sbjct: 1 MRGLLKPLQAVPEFI-GLIRGLENNFRQQAVFGLSGSQTSYLYAGLAGVAAPLPVLVVTP 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + A Q+ E+ P AV+ F P + + ++ +E RL Sbjct: 60 GEREACQMADEIAGLLPGAAVKLF-------------PVWQLLPFQIIAHSKEVEAQRLQ 106 Query: 126 ATKAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 ++++ VV+A A + L P ++ + L L G + ++RRL + Y R Sbjct: 107 VLESLVRGERAVVIAPAEAVLRRLVPPQIFGRAALRLATGERAGRDDLIRRLLAMGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 RG F +RG ++D+FP + +R+E FD+EV+ + F+ T + I I Sbjct: 167 GLVEGRGQFCLRGGILDVFPM-TAHRPVRIEFFDDEVDSIRRFNAATQRSEEKIDEVEIG 225 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + + +K+E A+ L + + ++L ++ E GY + Sbjct: 226 AARELIVEDKAWENFRRALKKEYRAQALKLEKAGETGAARQLAEKFAETAE--GACGYFN 283 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 GIEN+ + T+ DYLPA ++VD+ I + R L+ Sbjct: 284 GIENFLPYFY-----REVITILDYLPAGAPVIVDDPVRVKEMIDSIQRERMETYSDLLSR 338 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G LPS + L+ + S+ D V P Sbjct: 339 GRVLPSQFLAYAGWSDIQGGLSRHPVIYSSLLPRQ---------PDFVRPQQTFSLPWKA 389 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + L EIR ++ + A+ + L++HG Y S V Sbjct: 390 MPSFLGNLKMLAEEIRHWRKSGYATVILVSSHHRAQQILSSLKDHGVDAFYASSPEGHV- 448 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 R G +VLV + L G ++P+ L + + D G R + + +GR A Sbjct: 449 --------RSG--NVLVAVGSLSGGFELPDCRLAVVTERDIYGQFRRVKRERKRVGRMAP 498 Query: 545 NVNGKAILYG 554 V+ + Y Sbjct: 499 FVDLRVGDYV 508 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 113/646 (17%), Positives = 232/646 (35%), Gaps = 61/646 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F + + +E+ ++ + G S K I + + +V+ N A Sbjct: 4 FTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++K + P+ D I + R+ K + Sbjct: 63 KEIYEDLKLYDRN---------------VYLYPAKDIIFYSADIHGNAIVRERMRILKNL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LER+ + VVA++ P YL ++ + I+ + +L L Y R Q Sbjct: 108 LERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVEN 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI+P +++ R+EL+ +EV+ + FD + + + + IYP + Sbjct: 168 PGEFAIRGGIIDIYPL-TEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E + + ++ E L K E R+ Q + E + L +++Y Sbjct: 227 ILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSY 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 RF + + FDY D ++ DE + + ++ +E G+ L Sbjct: 287 IRFFY-----DKTCSFFDYFANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGYIL 341 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 PS +D E L+ + + +T + ++ + VD V+ V P Sbjct: 342 PSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAAKKKVDITVKS---------VNPY 392 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + L+ +++ RV++ + ++ A L + L ++ Y ++ Sbjct: 393 NNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIYS---------EDV 443 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R GE ++V + G + P + LV I ++D G + ++ + G Sbjct: 444 DRIPVKGE--IVVMHGSVHRGFEYPLIKLVIISESDIFGAEKKKKKKK-------PSYEG 494 Query: 549 KAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 K I + D Y I ++K + + G + Sbjct: 495 KQIQSFTDLNIGDY------VVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVLYIL 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 A G + D ++ + +++G + + A+ L Sbjct: 549 ATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKEL 594 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 70/464 (15%), Positives = 145/464 (31%), Gaps = 51/464 (10%) Query: 215 ELFDEEV--ERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 E+F E ++L D T + + + + + I+ A Sbjct: 621 EMFPYEETDDQLRAID-DTKRDMESKKIMD-----RLICGDVGYGKTEIAIRAAFKAISD 674 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + Q + M + L + L Sbjct: 675 GKQVVFLVPTTILAQQHYNTFSQRMMNFPISVDM------LCRFKTPAQQKKTLENLKKG 728 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L ++ +H + + + +G + + + + Sbjct: 729 QLDILIGTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDID--------VLTL 780 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLV 451 +ATP L S + D V +D + V D+++ E I + A +V Sbjct: 781 TATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYY 840 Query: 452 TTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREG 509 +++T + V + H + + +I+ + GE DVLV ++ G Sbjct: 841 VHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETG 900 Query: 510 LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 LD+ V+ + I +AD+ G + L Q GR R+ + + K + E Sbjct: 901 LDISNVNTMIIDNADQLGLSQ----LYQLRGRVGRSNR---TSFAFLM-YKRDKLLKEVA 952 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 +R + K E G G + D+ G + + V D+ Sbjct: 953 EKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNLLGAQQSG-------HMEAVGYDLYC 1002 Query: 630 KALQQKIHELEGLMM-----QHAQNLE---FEEAAQIRDQLHQL 665 K L + L+G + + +++ F + I++++ +L Sbjct: 1003 KMLNDAVKGLKGEISDEDTFDTSIDMDMDAFIPSTYIKNEMQKL 1046 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 111/645 (17%), Positives = 244/645 (37%), Gaps = 59/645 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 F ++ + I+ +EE L+ G+T S K ++ + +V+AP++ A Sbjct: 2 FTRQIEELKEIKTIEEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++Y ++ F NA + P + K + ++ + RL K + Sbjct: 62 RKIYEDLYSFNFGNA--------------SLFPKREALFYKIDAASQEVVSQRLQVIKKL 107 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 E VV S+ A G P DL+ K +G+ ++ +++ L + Y R Sbjct: 108 SEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEVIKSLVTMGYERVQMVEG 167 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+F +++ R+ELFD+E++ + FD +T + + I + I+P T + Sbjct: 168 KGQFSVRGGIIDVFSP-TEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEF 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E I + + + L + + ++ + ++L Q+ + +E + E I Sbjct: 227 IAGAEHIKKGISAVSNYLNSYLSKIKKSKSGIA-EKLQQKFEEIMEEITESKRVENIYEL 285 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + + ++ DY+ D ++++DES ++ + + L+E G LP Sbjct: 286 IDYFY-----DDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLP 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + + + + T E +V+ V R + Sbjct: 341 EQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRS---------MHHFH 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ +++ +VL+ + + A L + L+ + + Sbjct: 392 GNMDILVDDLKYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI---------KDSE 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D++ G V++ + +G + + I D + G + R + N Sbjct: 443 YDIQKG--QVVIYPASVSKGFEYVDAKFAVISDGEIFGQTK-------RRKRTVKIKNAD 493 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + + S + + E +K I G+ + + I+ G + Sbjct: 494 KIKSFTELEIGSYVVHVNYGIGKYEGIEK------IKVDGIVRDYLKIIYAGGDTLFVPV 547 Query: 609 KGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 + + V P + P ++ + + + + A++L Sbjct: 548 EQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDL 592 Score = 43.3 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + L + A ++V T + + E +E ++ L E Sbjct: 656 YGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKE 715 Query: 485 RMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 + +II++L G D++VG + LL+ + ++ L+ I + + G + E+ Sbjct: 716 QSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKEK 765 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 121/673 (17%), Positives = 245/673 (36%), Gaps = 71/673 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 +P + PE I L+ GL Q + G++ + K+F IA ++ +++ +++ + A Sbjct: 13 LQPLINTPEFID-LQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEA 71 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 A L ++K P+ V F P+ + + ++ I + R+ +++ Sbjct: 72 AGLTEDLKNLLPDLKVMTF-------------PARRLLPYQVFAYSKEILRQRMEVLESL 118 Query: 131 LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + V++A V A+ P + L L VG + ++ L E Y R + Sbjct: 119 CRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVES 178 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG ++DI+P + +RVE FD+EV+ + +F+P T + + + I+P Sbjct: 179 HGQFSVRGGILDIYPITGIN-PVRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREM 237 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 V + +A + + +E RR+ L + + L R + L+ +++ Y IE Y Sbjct: 238 VVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNL-SRCEEVLDNISQAKYFDSIEQY 296 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + TL +Y+ A+ L++VDE + R L++ G LP Sbjct: 297 LPYFYDEDI-----TLLNYIKAESLVLVDEPSRLQENTDLLQRERTETYSELMKAGRVLP 351 Query: 370 SALDNRPLKF-EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + IY S P L +S V V ++ Sbjct: 352 GQFKGYTDWAGIHKQITGFRAIYFSFLPRQASLWRSCNTVNFPVKT----------MQNF 401 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +V+ L EIR V++ A L L ++ YL D+ + + Sbjct: 402 MGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEALYLKKDLSEYPHLNV 461 Query: 489 IRDLRL---------GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 D+ G +++ L G ++ L I + + G + Q + Sbjct: 462 QEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETEIYGHRKKPSVQRQRV 521 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 K L+ + T + R + + + D+ Sbjct: 522 -------QDKMELFAELKTGDYVVHVNHGIGRYDGV-------------VQLTIGDV--K 559 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 + A P + + + + + K+ L G ++ +++ Sbjct: 560 RDYLLVKYAGEDKLYIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKS-------KVK 612 Query: 660 DQLHQLRELFIAA 672 + + ++ + +A Sbjct: 613 EAVKEMAQELLAL 625 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/425 (16%), Positives = 132/425 (31%), Gaps = 43/425 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E + Y Sbjct: 675 PMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKERFAK--YPV 732 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 I SRF++ R + L + +V +H + + + Sbjct: 733 NIAMLSRFITARRQRQIVQELLL----GQVDIVIGTHRLVQDDIKFKDLGLVVVDEEQRF 788 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + ++ATP L S V D + T D I Sbjct: 789 GVTHKEKLKQLRQNVD--------VLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPV 840 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + ++ E IR+ +V + + +L+ H + Sbjct: 841 QTYVLEEEPVIVREAIRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMK 900 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++ D +FD+L+ ++ GLD+ V+ + + DAD G + L Q GR Sbjct: 901 EDRLENVMLDFMNKKFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQ----LYQLRGR 956 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y T K + E +R + E G G + D+ G Sbjct: 957 VGRTNR---LAYAY-CTFRGDKVMSELAEKRLSAVREFTEFG---SGYKIAMRDLEIRGA 1009 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL----EFEEAA 656 NI + G V D+ + L++ + E +G ++A+ + E A Sbjct: 1010 GNILGPEQHG--------HIAAVGFDLYCRLLEEAVLEAKG--GENAKPIETLVELPVTA 1059 Query: 657 QIRDQ 661 I D+ Sbjct: 1060 YIPDE 1064 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 111/661 (16%), Positives = 248/661 (37%), Gaps = 70/661 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + G++ + G++ S +++ I V +P +++ + Sbjct: 4 DGLMEPIRKSSEFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDV 63 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + P+ Y P+ + +++ + RL + Sbjct: 64 EARKLYEDLCFYLPQ---------------VYYFPTKEVVFYNIDAISGDLRWERLKVIR 108 Query: 129 AMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ML +++ V ++ +LY + ++VG +D + I +L + Y R + Sbjct: 109 EMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F +RG ++DI+ S + RVELF +EVE + F+ + + + + I+ Sbjct: 169 ERRGQFSIRGGIMDIYSPISQE-PYRVELFGDEVESIRNFNLESQRSIEKMNNIEIFAAK 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + RERI +IKE+LA+ + L EN +++ T +LE + E I+ Sbjct: 228 EIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKNLETLQETWTFESID 287 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 ++ + + DY + ++VD+ ++ +Y + +E G Sbjct: 288 SFLPYFYEH-----TSSFLDY-AKNYFVIVDDIKRCSGKLDSVYFEFLENYKNFLERGNV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP + E + + I + +V+ I + Sbjct: 342 LPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLIVNFTQ---------ITLNN 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ L+ EI+ + + + ++L+ + T+ E L + L ++G Y + Sbjct: 393 YQGKLELLIEEIKHKKSKSFKILILSGTRARGERLVDTLRDNGIESSY----------RD 442 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ +++ GE + G L +G + PE+ + I D + G + R I+ + + Sbjct: 443 VVNEIKPGEVVITFGNQL--KGFEYPEIKISVISDKEVFGKAK--RKNIRKTNKKGTSK- 497 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 I + + HGI G+ K + + G + Sbjct: 498 -----------------IKSFTELKPGDFIVHVNHGI---GVYKGIKQLELQGHKKDYLE 537 Query: 608 AKGR---GKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 P+ + D V + + KI++L + + ++ + L + Sbjct: 538 LVYECEDKLYVPVEQLDMVQKYIGSEGKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIK 597 Query: 665 L 665 L Sbjct: 598 L 598 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 106/309 (34%), Gaps = 30/309 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + +SATP L S V D V T + V Sbjct: 758 EQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETPPDERYPIQTYV 817 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 D L+ + + + + +V +++ Y+ + +V H + E Sbjct: 818 VEYNDQLIRDAVLRELSRGGQVYFVYNRVENIKEMASYIAKLIPEGKVAVAHGQMQEREL 877 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 II D ++D+LV ++ G+D+ V+ + I DADK G + L Q GR R Sbjct: 878 EGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQ----LYQLRGRVGRT 933 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIA 604 I Y + K + E +R K K E G G + D+ G N+ Sbjct: 934 NR---IAYCYL-SYRKDKVLKEVAEKRLKVIKEFTELG---SGFKIALKDLEIRGAGNMM 986 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA-------AQ 657 + G V D+ + L+ I ++G + + E Sbjct: 987 GSSQHG--------HMAAVGYDLYCRMLEDSIKLIKGEIDKEPVETTVELKVDAYIPDNY 1038 Query: 658 IRDQLHQLR 666 I +++ ++ Sbjct: 1039 IENEVQKIE 1047 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 117/653 (17%), Positives = 234/653 (35%), Gaps = 55/653 (8%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAPNKTLAAQLYG 75 + + L + L G + G S K + + P +V+ + T A ++Y Sbjct: 2 ELQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYD 61 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + + F + P+ D + + R++ + ++E + Sbjct: 62 DFRNFTKQ---------------VWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQG 106 Query: 136 VVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV ++ + L + + + G +ID +RL + Y R Q G F Sbjct: 107 GVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFS 166 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDIFP ++++ LR+EL+D+EV+ + FD + + V + TIYP V ++ Sbjct: 167 IRGGIIDIFPL-TEEVPLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKK 225 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + +++E K L E +K E R+ + + + E G++ Y R+ Sbjct: 226 QLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFC 285 Query: 315 GRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + +Y P ++ +DE + + R +E G+ LP Sbjct: 286 -----PDTVSFLEYFPKGESVVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQT- 339 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 EE A + + V T + + G V + V + Sbjct: 340 ELLYPVEEVMARVQRPLTVMLTGLD--QKLPGMKVNHKFSIDVKN------VNSYQNSFE 391 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDT------VERME 487 L+ ++ + RV++ + ++ A L L E+G R E + Sbjct: 392 ILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEPEMETGDGREAKD 451 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++ GE ++V L G + P + V I + D G + ++ +T N Sbjct: 452 AHPKVKPGE--IMVTYGSLHRGFEYPLLKFVYITEGDMFGVEKKKKRRKKT------NYQ 503 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 GKAI +++ E K + E + + + D Sbjct: 504 GKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIEYGD-----GGNLYLP 558 Query: 608 AKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQ 657 A + D ++ + ++G + + A++L AA+ Sbjct: 559 ATRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYAAR 611 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 140/431 (32%), Gaps = 49/431 (11%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + D + +I+ + + + ++ A + Sbjct: 643 DAIDAVKT-DMESRRIMDRL-----------ICGDVGYGKTEVALRAAFKAVQDSKQVVY 690 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q ++ M + + ++ SRF P TL D L + +V Sbjct: 691 LVPTTILAQQHYNTFVQRMKD--FPVRVDMLSRF---CTPARQKRTLED-LRKGMVDIVI 744 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G + + ++ATP Sbjct: 745 GTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKQL--------KENVDVLTLTATPIP 796 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L S + D V +D V ++++ E I + A N +V Sbjct: 797 RTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYYVYNRVT 856 Query: 458 MAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 +++ ++ H + E I+ D GE DVLV ++ GLD+P Sbjct: 857 DIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETGLDIPNA 916 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I DAD+ G + L Q GR R+ Y + K + E +R + Sbjct: 917 NTMIIHDADRMGLSQ----LYQLRGRVGRSNR---TSYAFLM-YRRDKLLKEEAEKRLQA 968 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + E G G+ + D+ G N+ + G + V D+ K L + Sbjct: 969 IREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HMEAVGYDLYCKMLNE 1017 Query: 635 KIHELEGLMMQ 645 + L+G Sbjct: 1018 AVLALKGEKPD 1028 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 118/685 (17%), Positives = 233/685 (34%), Gaps = 85/685 (12%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-TMVLAP 65 + + + L + L+ G + G S K + + +V+ Sbjct: 1 MENPLLEL----QEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTY 56 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 + T A ++Y +++ F P+ D + + R++ Sbjct: 57 DDTRAKEIYDDLRSFT---------------SRVWLYPAKDLLFYSADIHGNLMARQRIA 101 Query: 126 ATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 + ++E R+ VVV ++ + L + + + G +ID RL + Y R Sbjct: 102 VLRRLMEDREGVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERV 161 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 Q G F +RG ++DIFP ++++ +R+EL+D+EV+ + FD + + V + TIY Sbjct: 162 AQVDGMGQFSIRGGIVDIFPL-TEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIY 220 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V +++ + +++E K L E +K E R+ ++E Sbjct: 221 PAAEVVLSADQLAAGIRRLEKEEKTYEKALREQHKPEEAHRIHTIIGELRSGLDEGWRIG 280 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G++ Y R+ + +Y P ++ +DE + + R +E Sbjct: 281 GLDAYIRYFC-----PDTVSFLEYFPQGESVIFLDEPARLKEKGETVELEFRESMVHRLE 335 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 G+ LP E A + V T + + G V + Sbjct: 336 KGYLLPGQT-ELLYPAAEILARMQKPYAVMLTGLD--QKLPGMKVNQKFSIDVKN----- 387 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 V + L+ ++ + RV++ + ++ A L L E+ R Sbjct: 388 -VNSYQNSFEILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYDLRAYCPDGREGES 446 Query: 484 -----------------ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 +R +R GE +LV L G + P + V I + D Sbjct: 447 GNAGGEGAGSADTGNPGAVNTSVRKVRPGE--ILVTYGNLHRGFEYPLLKFVFITEGDMF 504 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI-T 585 G + + K T KAI +EEHG+ Sbjct: 505 GVEKKRKR--------------------RKKTNYQGKAIQSFTELSVGDYVVHEEHGLGI 544 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +G+ K D + I G P +++ +A + K+++L G Sbjct: 545 YKGIEKVERDKVIK-DYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEWN 603 Query: 646 HAQNLEFEEAAQIRDQLHQLRELFI 670 + ++R + ++ + Sbjct: 604 KTK-------TRVRGAVQEIARDLV 621 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 147/442 (33%), Gaps = 55/442 (12%) Query: 215 ELF-----DEEVERLSLF--DPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 ELF D++++ + D + +I+ + + + ++ Sbjct: 647 ELFPYDETDDQMDAIDAVKKDMESRRIMDRL-----------ICGDVGYGKTEVALRAAF 695 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 A + + Q ++ M + + ++ SRF P TL D Sbjct: 696 KAVQDSKQVVYLVPTTILAQQHYNTFVQRMKD--FPVRVDMLSRF---CTPARQKRTLED 750 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L + +V +H + + + +G + + Sbjct: 751 -LRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKHL--------KENV 801 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L S + D V +D V ++++ E I + A N Sbjct: 802 DVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARN 861 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V +++ ++ H + E I+ D GE DVLV Sbjct: 862 GQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVSTT 921 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+ + + I DAD+ G + L Q GR R+ Y + K Sbjct: 922 IIETGLDISNANTMIIHDADRMGLSQ----LYQLRGRVGRSNR---TSYAFLM-YKRDKL 973 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 + E +R + + E G G+ + D+ G N+ + G + V Sbjct: 974 LREEAEKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHG--------HMEAV 1022 Query: 624 PMDMSPKALQQKIHELEGLMMQ 645 D+ K L Q + L+G ++ Sbjct: 1023 GYDLYCKMLNQAVLALKGETLE 1044 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 124/652 (19%), Positives = 244/652 (37%), Gaps = 66/652 (10%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 + + + + GL +GL Q L G++GS ++ + + + +P ++ N A ++ Sbjct: 8 IKESDDFKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVT 67 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ + +V + P ++ + A + + RL + Sbjct: 68 DDLTSLLEDRSVLLY-------------PVNELISSEIAVASPELRAQRLDVINRLTNGE 114 Query: 135 DVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 +VVA V+AI + P +++ + + VG I+ + RL E+ Y R+D G F Sbjct: 115 APIVVAPVAAIRRMLPPVEVWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +IDI+P S++ +R+ELFD EV+ + F+ + + T+ I P + Sbjct: 175 SIRGGIIDIYPLTSEN-PVRIELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRP 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 E +AME+I LAA K L + +++ L D E ++E + Y + Sbjct: 234 EEKARAMEKIDSGLAASLKKLKADK---QKEILHANISHDKERLSEGQTDQELVKYLSYF 290 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P +L DY P + LL++DE + + + L+E G L Sbjct: 291 Y-----EKPASLLDYTPDNTLLILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHD--I 343 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 F++ A + + + + S ++V+ R +++ Q++ Sbjct: 344 RLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGR---------QMQSFHGQMN 394 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L E+ + N V+ K + L+ L ++ S L Sbjct: 395 VLAGEMERFKKSNFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKK----------ALV 444 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+ ++ G L+ G ++P + L I + + ++ Q + A R Y Sbjct: 445 QGQVYIMEG--ELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAER-----IKSY 497 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + I + + E +GI LN Sbjct: 498 SELQIGDYVVHINHGIGKYL-GIETLEINGIHKDYLNIH--------------YQGSDKL 542 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D V + + + K+++L G + + I D L +L Sbjct: 543 YVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKL 594 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/422 (17%), Positives = 127/422 (30%), Gaps = 38/422 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + E + Sbjct: 644 PMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINI 703 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G LS + L + +V +H + + + + Sbjct: 704 G------LLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRF 757 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + ++ATP L S V D V T + Sbjct: 758 GVTHKEKIKQI--------KANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPV 809 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDID 481 V L+ E I + A +V E + + +V Y H + Sbjct: 810 QTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMT 869 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ GE DVLV ++ G+D+P V+ + + DADK G + L Q GR Sbjct: 870 ENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQ----LYQLRGR 925 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y T K + E +R + K E G G + D+ G Sbjct: 926 VGRSNR---VAYAYF-TYRRDKVLTEVAEKRLQAIKEFTELG---SGFKIAMRDLTIRGA 978 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG---LMMQHAQNLEFEEAAQI 658 + D+V D+ + L++ I E +G Q ++ E A I Sbjct: 979 GNLLGAQQHGF-------IDSVGFDLYSQMLKEAIEERKGDTAKTEQFETEIDVELDAYI 1031 Query: 659 RD 660 + Sbjct: 1032 PE 1033 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 128/673 (19%), Positives = 252/673 (37%), Gaps = 76/673 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ G+ T+ G + S K + L + +A N Sbjct: 11 LIEPLFEIKEYTNVLENIKRGI-----PTTVTGPSESQKVHIACALCGHLGLKGIYIAYN 65 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A +++ ++ FF ++AV + PS + + + + R++A Sbjct: 66 EMQARKMFEDVSFFFGKDAV--------------FFPSKEIMLHDVEAKSYDSIYERINA 111 Query: 127 TKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 ++ +V S A+ L D L+ + ++++ +G ID ++L + Y R Sbjct: 112 LYRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVT 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + F VRG ++DIFP +D A+R+ELFD+EV+ + FD +T + V + TI P Sbjct: 172 TVEGKSQFAVRGGIVDIFPVNAD-TAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + P ME+I +L + K + N Q+L + D+E ++ Y +G Sbjct: 231 ARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAG 290 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ++ Y ++ E P + DY+ ++ L+ VDE +I + ++ +E G Sbjct: 291 MDRYIPYI-----IEKPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENG 345 Query: 366 FRLPSALDNRPLKFEEFE--ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 L + D ++ T+Y + P + E+ ++V +++ Sbjct: 346 QLLAGSFDIFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEEKRENIVSKLL---------- 395 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L +I RV++ + TK E L E L YL Sbjct: 396 --NSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYL------- 446 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 E RD++ GE V++ +L G + P + V + + G + R Sbjct: 447 --EEPHRDIQPGE--VVITHGVLNRGFEYPGIGFVVVSGKELFGQEKKT--------RRH 494 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 ++ GK I + KY + + + K + I Sbjct: 495 KSAKGKKISVFTDLN-----VGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQ------ 543 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 + G P + D + + + K+ +L G + E ++ +L Sbjct: 544 ---YSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELI 600 Query: 664 QL---RELFIAAS 673 L RE+ + Sbjct: 601 NLYAQREMAEGHA 613 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 83/481 (17%), Positives = 154/481 (32%), Gaps = 59/481 (12%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFR----VRGEVIDIFPAESDDIALRVELFDEEVER 223 + + + L L YA+ + A F + + D+FP + + LR +E Sbjct: 591 SLKELAQELINL-YAQREMAEGHA-FGKDTVWQKQFEDLFPYQETEDQLR------CIEE 642 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + D + + P + + ++ A + Sbjct: 643 IKR-DMESPR-----------PMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQVAYLVPTT 690 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q E M + + +E SRF + + A + V+ +H Sbjct: 691 VLAQQHYNTFKERMKD--FPITVEVLSRF----RTQAEQKRILKDVKAGMVDVLIGTHRL 744 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + +G + + + ++ATP L Sbjct: 745 LQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNID--------VLTLTATPIPRTLHM 796 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDL 462 S + D + V D+++ + I + + +V R Sbjct: 797 SLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQK 856 Query: 463 TEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +++ R H ++ E I+ GE+D+LV ++ GLDMP V+ + + Sbjct: 857 AAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIV 916 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 DADK G + L Q GR R+ + Y IT K + E +R + K Sbjct: 917 EDADKMGLAQ----LYQLRGRVGRSNR---LAYAY-ITYKKDKVLSEIAEKRLQAIKEFT 968 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 E G G + D+ G + D+V DM K L + ++EL Sbjct: 969 EFG---SGFKIAMRDLQLRGAGNLLGPQQ-------HGHIDSVGYDMYCKLLAEAVNELR 1018 Query: 641 G 641 G Sbjct: 1019 G 1019 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 110/627 (17%), Positives = 227/627 (36%), Gaps = 59/627 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ + +E + L G+ + K+ + +++ ++ N+ A Sbjct: 6 LLAPIRNSTDYIQVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEA 65 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q+Y ++K + + A+ ++PS + + + + ++ R+ A + + Sbjct: 66 RQIYEDLKFYAGDRAI--------------FLPSKEIMFYNMEATSRNAQEERMKAIETI 111 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 LE D +VV ++ L P Y K + VG +D ++ L Y R D + Sbjct: 112 LEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEE 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F +RG++IDIFP+ S ++ +RVELF +E++ + F P T + + I +Y Sbjct: 172 RGQFSIRGDIIDIFPS-SAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKET 230 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ ++ K L + K + L + E + LG G+E Sbjct: 231 TIESFDVEAVILKLNQDYKNISKKLNQAAK----ENLKNSLEELSEKLRSLGNFRGVEKL 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 ++ E L Y + L ++DE + G + + LVE G P Sbjct: 287 LPYIY-----EKTTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFP 341 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 E + L + I + + ++++ RP + Sbjct: 342 GQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFPPKEIINFDTRP---------MASFH 392 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ L EI++ ++ + TK L E+L E YL + Sbjct: 393 GKLELLGKEIQRLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEK--------- 443 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +DL GE +L LR G + + I D + G + +R + + + Sbjct: 444 QDLVTGEVVIL--SGNLRRGFEYVKNKFAVITDYEIYGVHKQQR-------KTNKTKDAS 494 Query: 550 AI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + D G + ++ + +G+ K + I G+ Sbjct: 495 PIKSFIDLKVGDYVVHEGHGIGKYIGIEE------LKVEGVKKDYLKIRYSGEGFLYVPT 548 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + D+ P ++ + Sbjct: 549 DQMDLIQKYIGSDDAPPKLNKLGGSEW 575 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 74/447 (16%), Positives = 147/447 (32%), Gaps = 45/447 (10%) Query: 225 SLFDPLT--GQIVSTIPRFTIYP----KTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 F P + + + + P V +AM+ + K + Sbjct: 606 HAFSPDSDWQKQFEELFPYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIR 665 Query: 279 KLLEEQRLTQRTQFDLEM--MNELGYCSGIENYSRF------LSGRGPGEPPPTLFDYLP 330 + +++ F + + + Y + + +S F LS + + + Sbjct: 666 AAFKAVGDSKQVAFLVPTTILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIR 725 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + +V +H + + + +G + AL + + Sbjct: 726 TGNVDIVIGTHRLLSKDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSID--------VL 777 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD-DLLSEIRQRAAINERV 449 ++ATP L S + D V + V + ++ I + A +V Sbjct: 778 TLTATPIPRTLHMSMIGIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQV 837 Query: 450 LVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 + + L+E RV H + E +I+ + GE+D+LV ++ Sbjct: 838 YYVYNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIE 897 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 G+D+ V+ + I DADK G + L Q GR R+ Y + K + E Sbjct: 898 TGMDISNVNTIIIQDADKLGLSQ----LYQLRGRVGRSYRQG---YAYLM-YEKDKILSE 949 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMD 626 +R K K E G G + D+ G N+ + G + D Sbjct: 950 VAEKRLKAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGGEQHG--------HMAAIGYD 998 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFE 653 + K L++ + E+ G + ++ E Sbjct: 999 LYVKLLEETVGEMRGEYTEKFEDTTIE 1025 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 122/646 (18%), Positives = 225/646 (34%), Gaps = 61/646 (9%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 +++ L EGL+ +Q + G+ S +T +A + RP +++ P++T A ++Y +M Sbjct: 12 LPSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDM 71 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA-SVNEHIEQMRLSATKAMLERRDV 136 F + V F P + + S + R++A K + ++ Sbjct: 72 LSVFKDEDVYLF-------------PGKELLYYSNLFSESGDAAAQRIAAMKRLARGDNI 118 Query: 137 VVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVVA+VSA+ P + + L I +L +L + Y R + +G V Sbjct: 119 VVVATVSAMVTKMPPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSV 178 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+PA + R+E F E V+ + FDP + + + + P V Sbjct: 179 RGGIVDIYPAG-EPYPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAE 237 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 A+ + +E A + L + + E +L +R +E + E Y G+E Y + Sbjct: 238 RKNALSALAKEDAKLSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFYD 297 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + + DY P + LL +DE + R + TL G + D Sbjct: 298 QAA-----KITDYFPDNTLLFIDEPQRCENTAEQLVREIGEMQSTLFAQGDLPARSADMV 352 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 L Q + S + R L V Q D Sbjct: 353 WSYKSLLANLLTQLVAFSLF--------AHSSDHHPYRRSVSLSAKP--VPKFLGQWDLF 402 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 E+ Q RV++ T +++ + + E L E Y S+ D +R + Sbjct: 403 GEEVGQWRRQGYRVVILTSSRQRSTGIVEVLAEKNIPAHYTLSEPDLAQRSVTLL----- 457 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG-RAARNVNGKAILYG 554 L G +PE+ LV + + D + +R + G R Sbjct: 458 -------HGSLESGFVLPEIKLVLLTEQDILPQKKKKRRIKGKEGVRVG----------- 499 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + +Y + G + + I G + + Sbjct: 500 ---DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGNDKLYIPIEQIDVV 556 Query: 615 RPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQ 657 R + + MS + ++ + + A+ L AA+ Sbjct: 557 RKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLALYAAR 602 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 77/416 (18%), Positives = 125/416 (30%), Gaps = 40/416 (9%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A + Q +E + G LS Sbjct: 665 ALRGAFKAVMDDKQAAFLVPTTVLAQQHYHNFVERLEGFPVNVG------ILSRFQSPAE 718 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L + +V +H + + + +G R + Sbjct: 719 QKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKERIKML------ 772 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IR 440 + ++ATP L S V D V T D V D L+ E + Sbjct: 773 --KKNLDVLTMTATPIPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVM 830 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFD 498 + +V + L+E VR H + +++ GE+D Sbjct: 831 RELNRGGQVYFVHNRVQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYD 890 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VL+ ++ GLD+P V+ + I DADK G + L Q GR R+ I Y T Sbjct: 891 VLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQ----LYQLRGRVGRSNR---IAYAYL-T 942 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPI 617 K + E +R + K E G G + D+ G NI + G Sbjct: 943 YQKDKVLTEVAEKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNILGPEQHGF------ 993 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELFI 670 V D+ K L+ I +G Q E +A + R+ + Sbjct: 994 --MMAVGFDLYVKLLEDAIRTYKGQEEDTRQEPRIEIQADAYLPASYISDARQKIV 1047 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 121/643 (18%), Positives = 234/643 (36%), Gaps = 56/643 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 E ++ +G+ G + + G+ G+ F N++ + + +++ + Sbjct: 2 KLSDLLLSSEKTEKIMKGINQGQ-NLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVH 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + Y ++ PE V + P S+ + + R+ ++ Sbjct: 61 LNRYYEDLIRMMPEEKVLLY-------------PESEVLPHEQIVPDLAETAQRIRVLQS 107 Query: 130 -MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + +++ V++ + +A+ P + K + L VG ID +L Y R + Sbjct: 108 VITDKKPAVLLTTATALLRKMIPVSTFKKYIFSLQVGQEIDLNKFTEKLRISGYNRVEMV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F +RG +IDIFP S + R+ELF +E++ + F+P T + ++ + I P Sbjct: 168 ENPGEFSIRGGIIDIFPL-SVNKPFRIELFGDEIDTIREFEPATQRSRRSLEKVFISPAR 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + +I +A+ IK + L ENN E L ++ LE + E G E Sbjct: 227 EIIVSPRQIKKAIPAIKSDFNDTINTLYENNYKEEGDYLREKRDESLEKLAERDDFPGSE 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 + + TL DYLP D ++ D++ T +I G + + TL+E G Sbjct: 287 QFLPYYY-----PELHTLIDYLPDDSVIFFDQAEKTWQRIKGFIDELQETQATLLEQGSV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP+ N + + L S+T N EL + V P Sbjct: 342 LPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWVKDF--------EKVSFTTRSVEP 393 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++D +R+ RV VT + A + YL+E+ V + + R Sbjct: 394 YHGKLDLFAERVRELVDTGYRVFVTLNSSNKARRVVNYLKENEMAVAF---RREEFSRER 450 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 ++V L EG + +++L + + G + +R + I N Sbjct: 451 -----------IIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRRQLNDI------EN 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G I D + KY + QG +K + + G++ Sbjct: 494 GVKISSID-----ELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVP 548 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + DN P + K +++ + + + + Sbjct: 549 TDQFNLVQKYIGADNKPPKLY-KLGGNDWKKVKQKVKESVKEM 590 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 68/425 (16%), Positives = 134/425 (31%), Gaps = 40/425 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A + Q E M Y Sbjct: 646 TPMDRLLCGDVGYGKTEVAIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKN--YP 703 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + E + L A + ++ +H + + + Sbjct: 704 INIEMISRFKTPAEQRE----VLKKLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEEQR 759 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + ++ATP L + V D V T + Sbjct: 760 FGVSHKEKIKDL--------KRNVDVLTMTATPIPRTLHMALVGVRDMSVIETPPENRYP 811 Query: 424 EVRPVAT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 + + + +R+ +V ++ +++ RV H + Sbjct: 812 IRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQATMIKKLVPECRVAVAHGQM 871 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + ++ D ++DVLV ++ GLD+P V+ + + AD+ G + L Q G Sbjct: 872 NEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNRADQMGLAQ----LYQLRG 927 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ I Y + + + E +R + K G G + D+ G Sbjct: 928 RVGRSNR---IAYAYLL-YEKDRVLPEVAEKRLRAIKEFTNLG---SGFKIAMRDLEIRG 980 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAA 656 N+ + G +V + K L+ + EL+G +E + A Sbjct: 981 AGNLLGPEQHG--------HIASVGFSLYCKLLEGAVEELKGKEKDKGITRVEIELDIDA 1032 Query: 657 QIRDQ 661 + D+ Sbjct: 1033 YLPDE 1037 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 119/662 (17%), Positives = 242/662 (36%), Gaps = 71/662 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVT--GSGKTFTIANVIADLQRPTMVLAPNKT 68 F+ +Q R++++ L G ++G + G+ + F + V + +VL + Sbjct: 4 FQEPFEQLNIYRQIKDWLAAGDGFVDVIGSSMEGTDRVFLMNAVSDESSVK-LVLTYSDK 62 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A QLY +++ + + P+ D I + R+ + Sbjct: 63 RAEQLYSDLRFYSRD---------------VYMYPAKDILFFSADVHGNAITRKRMDVLR 107 Query: 129 AMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ +VA+V A++ Y+ K ++++ +D + ++L+ L Y + D Sbjct: 108 RLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQKLSALGYDKVDNV 167 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG +IDI+P +++ R++++D+EV+ + FD + + + T+ IYP Sbjct: 168 EEPGQFAVRGGIIDIYPL-TEECPYRIDMWDDEVDTIKTFDAESQRSIETVDSIVIYPAG 226 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V ++RI + + +I+ EL + L E+ R+ + E + E G++ Sbjct: 227 EIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKEQLTEFSAVYGVD 286 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 +Y + +L D LP D +++DE+ + G R+ +E G+ Sbjct: 287 SYVDYFY-----SDTVSLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMVHRLEGGYV 341 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 LP ++ + + + + S + EV Sbjct: 342 LPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGRDDRISYAHKTEI---------ECHEVHS 392 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL-HSDIDTVERM 486 D L+++IR VL + + A+ + + L + YL +D R Sbjct: 393 YRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKVLTPRE 452 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 LR G +P + LV + + D ++R+ Sbjct: 453 IAAMA------------GRLRSGFMIPAMHLVVVSEGDVF---------------SSRSS 485 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ---NI 603 +GK + + K+ + H G+ K + I G + Sbjct: 486 SGKRTQKKLPYSGEIIKSFSDVSVGDYV------VHEKYGIGVYKGIEKIEVDGALKDYL 539 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A+G E D + S + KI+ L G Q +N ++ + L Sbjct: 540 VIEYAEGGKLYVLASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLV 599 Query: 664 QL 665 +L Sbjct: 600 KL 601 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/443 (15%), Positives = 128/443 (28%), Gaps = 44/443 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + + I V + I+ A + Q + Sbjct: 642 VKADMESSRI--MDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILAEQHYETF 699 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E M + R L + L + +V +H + + Sbjct: 700 TERMKDYPVV------IRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKNL 753 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G + + ++ATP L S + D + Sbjct: 754 GLLIIDEEQRFGVNHKEKIKE--------MKTNVDVLTLTATPIPRTLHMSLVGIRDMSL 805 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 +D V +L E I + A +V E T +++ Sbjct: 806 LEEAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKLVPN 865 Query: 473 V--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + H +D +I+ E DVLV ++ GLD+P + + I DA+ G + Sbjct: 866 ANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQ 925 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R+ A + + K I E +R + K + G G+ Sbjct: 926 ----LYQLRGRVGRSDR-SAFAF---MFYRRNKVISEVAEKRLRAIKEYTDLG---SGVK 974 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 D+ G +++ + V D+ K L + E G + H Sbjct: 975 ISKADLNIRGAGSVLGESQSGNY-------EVVGYDLYCKMLNDAVRERRGDTVFHDYET 1027 Query: 651 E-------FEEAAQIRDQLHQLR 666 E F +++ +L Sbjct: 1028 EIDIPIDSFIPETYVKNDFIKLE 1050 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 122/648 (18%), Positives = 232/648 (35%), Gaps = 60/648 (9%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 N++ E + GL G L G+ K +A ++ + P +V+ P Sbjct: 3 NNSILQIIRDSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGS 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A +L +++ F+P ++ Y+P S+ + + + + RL Sbjct: 62 EEAQRLAADIESFWPGEGID-------------YLPPSELLPLEVYTPSPELAAQRLKVL 108 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMML-HLTVGMIIDQRAILRRLAELQYARNDQ 186 ++ R ++V V + P L+ L L VG IID+ A+L++L L Y R + Sbjct: 109 TNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEV 168 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 G VRG +IDIFP +++ +R+ELF +E++ L FDP++ + V+ + + P Sbjct: 169 VEAPGQLAVRGGIIDIFPLGAEE-PVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPA 227 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 V P + +E +K E + L + + + L R Q + M+ + G Sbjct: 228 QE-VLPPPDLGPGLETLKAEFSQTYATLRQ-RQPQAARELKDRVQELIAMLEAGSWPGGS 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 F R TLF+Y LLV+D+ + ++ + ++ G Sbjct: 286 SQLQPFFYPR-----QATLFEYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGL 340 Query: 367 RLPSALDNRPLKFEEFEA-LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 LPS + Q +Y S P G + V + Sbjct: 341 ALPSQGQAYLDSADLERLWQRYQRLYFSLLP----RRVPGSNPRPAVGISAQT------I 390 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 ++ ++ E+ + R+++ L + L E G + E Sbjct: 391 PAFQGKLGLVVEELTRWRREGYRIILMVADPNRVVALRQALAEQGIEA------LTHPEA 444 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + G +V++ LR+G PE+ L I D + G +R + R Sbjct: 445 RDTL-----GRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYGPIRRP-----RRVKTPRE 494 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + D + R Q+ + G+ K + I G++ Sbjct: 495 GS-KISSFTDLKEGDYVVHVHHGIGRYLGLQQLD------VGGVKKDYLLIQYAGKDRLY 547 Query: 606 TKAKGRGKSRPIVEPDN---VPMDMSPKALQQKIHELEGLMMQHAQNL 650 + V + + + ++ + + AQ L Sbjct: 548 VPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQEL 595 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/405 (14%), Positives = 119/405 (29%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + Sbjct: 648 PMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFP--- 704 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + L + +V +H + + + Sbjct: 705 ---VKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRF 761 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G L + + ++ATP L S V D + T D + Sbjct: 762 GVAHKEKLKQLRYSVD--------VLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPV 813 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V + + IR+ +V + + + ++++ R H + Sbjct: 814 QTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMG 873 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ D G +DVLV ++ GLD+ + + + ++D G + L Q GR Sbjct: 874 EEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNFGLAQ----LYQLRGR 929 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y T K +GE +R + G G + D+ G Sbjct: 930 VGRTNR---LAYAYF-TYRPDKVLGEIAEKRLAAIREFTAFG---SGYKIALRDLQIRGA 982 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N + G V D+ + L++ + +L+ + Sbjct: 983 GNFLGPEQHG--------HMVAVGFDLYCQLLEEAVRKLKEQRGE 1019 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 121/667 (18%), Positives = 234/667 (35%), Gaps = 78/667 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 AF + + E ++ G + K+ I ++ +++ + Sbjct: 2 KAFTEPLLSLAGFEEMTKTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQ 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY E F E Y PS D + + R+ A K Sbjct: 61 KAKELYDEYSFFDKE---------------VVYYPSKDVLFYQSDIRGNLLTAERIRALK 105 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 A+ E+ V +V + A+ P + + +L L G ++D + I L + Y + Q Sbjct: 106 AIREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG ++D+FP +++ +R+EL+ +E++ + FD + + + I R +IYP Sbjct: 166 QTMGQFSVRGGILDVFPL-TEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAA 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 V E ++++K E L + K E R+T E EL +G++ Sbjct: 225 ELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMD 284 Query: 308 NYSRFLSGRGPGEPPPTLFDYL-PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 + + G + DY P+D L+ DE Q + + G+ Sbjct: 285 AFLSYFFDERVG-----ILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRLAMGY 339 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIE 424 LP ++ + E L + A N L + G + Sbjct: 340 ILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANGLHQLGSYGI-----------HCQS 388 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 V P + L+ ++++ RV++ + ++ A+ L+E + + G Y Sbjct: 389 VSPYNNSFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYT-------- 440 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +L G ++V +R G + P + I ++D G + ++ R Sbjct: 441 -ENYDHELFEG--QIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRH-------R 490 Query: 545 NVNGKAI-LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 G+ I + D GI ++KKV D + + Sbjct: 491 TYEGEKIQSFTDLSVGDYVVHENHGLGIY---------RGIEKLEVDKKVKDYIKI---- 537 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 G + D + A + K+++L G +N ++R + Sbjct: 538 --EYQGGSNLYILATQLDMIQKYAGKDARKPKLNKLGGQEWTRTKN-------RVRGAVK 588 Query: 664 QLRELFI 670 Q+ + Sbjct: 589 QIAGDLV 595 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 112/334 (33%), Gaps = 31/334 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 + + L + ++ +H + + + +G Sbjct: 708 LMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGLLVIDEEQRFGVTHKEK 767 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + + ++ATP L S + D V +D + V Sbjct: 768 I--------KQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEY 819 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEI 488 D+L+ E I + A N +V R D+T L+E + H + E I Sbjct: 820 NDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPDATVAFAHGQMKETELERI 879 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + GE DVLV ++ GLD+ V+ + I DAD G + L Q GR R+ Sbjct: 880 MYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQ----LYQLRGRVGRSNR- 934 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 Y + K + E +R K + G G + D+ G N+ + Sbjct: 935 --TAYAFLM-YRRNKMLKEVAEKRLAAIKEYSDLG---SGFKIAMRDLEIRGAGNLLGAE 988 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G + V D+ K L + + E +G Sbjct: 989 QSG--------HMEAVGYDLYCKMLSEAVKEAKG 1014 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 304 bits (778), Expect = 7e-81, Method: Composition-based stats. Identities = 115/647 (17%), Positives = 221/647 (34%), Gaps = 62/647 (9%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 + I R+ L TL G+ GS + +A ++ +RP +V+AP+ AA++ E Sbjct: 5 DSQLIDRITGHLAPKTGRVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTE 64 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ F P+ D + S + + RL+ + +++R+ Sbjct: 65 LRFFSG------------RPFDVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTA 112 Query: 137 VVVASVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VV + A+ P L L+ G ++ L +L L Y RGTF V Sbjct: 113 AVVTTPDALRQRVLPRTMLDNASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DIFP + +R+E F + VE + FDPL+ + ++ + + P V E Sbjct: 173 RGGIVDIFPPGFEQ-PVRIEFFGDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEV 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + A IK + E + + LE + + Y +G+E Sbjct: 232 LKSASHHIKA-------------RCDELEISPVARRELLEQLQQGLYPTGVEWLLPLFHP 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 R TLFDY D + VV + + R ++ E G S + Sbjct: 279 RL-----ETLFDY-AGDAVRVVLDPEALAEEDERFDRELVTAEDQARERGDLFASPAEFF 332 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV-DD 434 E ++ + T + + + D ++V + ++ Sbjct: 333 LTASETAGSIEAGRLV---TIPYLTVTGESDEKTALALDIQENTDLKVDVSSDSERILKP 389 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID-TVERMEIIRDLR 493 L++ + +RV+V + A+ L E L + + SD ER Sbjct: 390 LVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNI--SDRPFPAERERD----- 442 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G+ DV++G L G +PE L+ I + + G + G + Sbjct: 443 DGKVDVVIGD--LSRGFRLPEEKLIVIAEEEIFGRRQK------RRGVSELRKKQIMTSL 494 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 + + + ++ G + + G + Sbjct: 495 AELKPGDYMVHLDHGIGI-YRGLQHISLSGCAGDFIL-----LEYAGGDKLYLPVDRLNL 548 Query: 614 SRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + V + + + + ++ + + + A L AA+ Sbjct: 549 VQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAAR 595 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 136/434 (31%), Gaps = 42/434 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + + Y Sbjct: 641 PMDRLVCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFKARL--GAYPV 698 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + E + + + + V+ +H + + + Sbjct: 699 TVEMLSRFRTPKEQKE----ILEKVKKGAIDVIIGTHRLLQSDVTFKDLGLLIVDEEQRF 754 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + ++ATP L S + D + T +D + Sbjct: 755 GVTHKEKLKKY--------KAVVDILTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 806 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA DDL+ E + + ++ + + E+L + H +D Sbjct: 807 KTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVPEAKIAVGHGQMD 866 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ GE ++L+ ++ GLD+P + + I AD G + L Q GR Sbjct: 867 EGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQ----LYQLRGR 922 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P AI R R K + E G G D+ G Sbjct: 923 VGRSKQR---AYAYLLIPGEG-AISSDARERLKIIQELTELG---AGFRLATHDLEIRGA 975 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM----QHAQNLEFEEAA 656 +I K G V D+ + L++ I L+G + NL A Sbjct: 976 GDILGAKQSGN--------IAAVGFDLYTELLEEAIQNLKGEERLERVEPEINLRIP-AF 1026 Query: 657 QIRDQLHQLRELFI 670 D + + + I Sbjct: 1027 VPEDYVREPNQRLI 1040 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 109/658 (16%), Positives = 209/658 (31%), Gaps = 58/658 (8%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 P+ + +A + + LG+ S + + IA + + +R +VLAP K A Sbjct: 4 PNPNAVKAAAQYLALTRESQGPVECLGLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKT 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ F + + P+ K S + R+SA M Sbjct: 64 LCADLDFFLQDLKQPESALPGQGW--ILEFPAYHILPFKGISYHTETAANRISALSRMAN 121 Query: 133 -RRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 +VV + A+ L + G +D+ A + +L Y +N + Sbjct: 122 SPDPAIVVTTPQAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEP 181 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F VRG ++D++ LR+E F +EV+ + F P T + + + I P T V Sbjct: 182 GDFCVRGSIVDVYGPPYSQ-PLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAV 240 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 ++R+ + ++E+ + + ++ + GIE + Sbjct: 241 VSKDRLQSVIHRVREKAVLADMP-------------VTKIREVVDSLKATQQFPGIEGFV 287 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 L G +LFDYLPAD L V + + ET Sbjct: 288 PLLYENGG----DSLFDYLPADTLCTVLDPVAASQEYEKYLEDVEENFETAQAENRLSIP 343 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATP---GNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + L T G E E + V T L+ + + Sbjct: 344 PAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAGKARMQLHVETNTELVQNLKASKE 403 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + L + + +++ +K AE L L +G + R + Sbjct: 404 RDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLESLLTPYGVGLS----------RNQ 453 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 V++G L G P SL + + + G R + R Sbjct: 454 NWMTRPSARCQVVLGS--LSSGFVWPAESLAVVTETEIFGPKHRRRKIETQRPRT----- 506 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + + + + +HGI G K+ + Sbjct: 507 ----------------ELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLEY 550 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + + + + + +L G + ++ + +I +L +L Sbjct: 551 RDGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKL 608 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 63/435 (14%), Positives = 127/435 (29%), Gaps = 42/435 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A Q + L+ Sbjct: 658 PMDRLICGDVGYGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYE------ 711 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G L+ + L + +V +H + + + + Sbjct: 712 GYPVKIACLNRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRF 771 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L S + D V T Sbjct: 772 GVKHKETLKKI--------RATVDVLALTATPIPRTLHMSMVGIRDITVINTPPEQRRP- 822 Query: 425 VRPVATQVDDLL--SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDI 480 + ++ D+++ IR A +V + + + L+ R H + Sbjct: 823 ITTYVSKFDEVIAAEAIRAELARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQM 882 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +++ E D+LV ++ GLD+P + + I AD G + + Q G Sbjct: 883 SETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPAANTILINRADMFGLAQ----IYQLRG 938 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R + Y P + + +RR K EH G + D+ G Sbjct: 939 RVGRGDDQ---AYAYLFIPDESVLTRDAQRR----LKVLMEHSDLGAGFAIAMSDLQIRG 991 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL----MMQHAQNLEFEEAA 656 A+ + V +M + ++ I +L+G + N++F A Sbjct: 992 GGTILGSAQSG-------QIAAVGYEMYLQLMETAIGQLKGEGSAPPLDPEINVDF-SAF 1043 Query: 657 QIRDQLHQLRELFIA 671 + + + +A Sbjct: 1044 IPEWYIPDVDQRLLA 1058 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 114/649 (17%), Positives = 216/649 (33%), Gaps = 57/649 (8%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAH---QTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 +++ + E Q + G++GS +A + RP ++ + Sbjct: 4 LVDIIPYENSLQNIIEDFSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDN 63 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A LY ++ + V + P + + A + + R Sbjct: 64 YRAESLYSDLVTLLDKEQVYIY-------------PEHQVYPFELAWQSRDVNNERAQVL 110 Query: 128 KAMLERRDVVVVASVSAIYGLGDPDLYLKMM-LHLTVG-MIIDQRAILRRLAELQYARND 185 +AML ++ V + S+ + P +K L+L VG + I +L L Y Sbjct: 111 QAMLSKKSAVYIFSLKSAKEKLSPAQVVKQTFLNLEVGNEKLSPTMIAEKLTGLGYENTS 170 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q+G F RG +ID+FP S+ + +R+E FD+E+E + FD T + + + P Sbjct: 171 MVEQKGQFSHRGGIIDVFPVASE-LPVRIEFFDDEIESIRAFDLATQRSLKEYNSLVVGP 229 Query: 246 KTHYVTPRE-RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 + V + QA+ ++ E ++ L+++ + L +R DL + Sbjct: 230 GSQLVIGDNTNLSQALNQLTREFELQKGKLMKDGITDRSEELEERINRDLSSLENGISLP 289 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 Y + + G T+ D+LP + L VDE + E+L+E Sbjct: 290 HFHRYLSYFYPKNYG----TIIDFLPTNSLFWVDEPNRIKESDEFYNNEITELAESLIEE 345 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G LP + + TIY + E + Sbjct: 346 GKILPGESNLFYSIEDVLSGNPFDTIYSANFLRQNPFE----------NVSQATNMSVKS 395 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + Q D L E++Q N R+++ + T A L E L++ + E Sbjct: 396 MNQFYGQWDFFLKEMKQWMNNNYRIILFSPTPESARTLYENLKKEEIGATIVEKGNTKTE 455 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 V++ + L+ G + E L I D G Q +R Sbjct: 456 ------------NQVVIAVGDLKSGFILQESKLAVITYGDLWG--------HQKKKIRSR 495 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + KY + GL K + I G + Sbjct: 496 KRDKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSL 555 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMS---PKALQQKIHELEGLMMQHAQNL 650 + + + V + P + Q+ ++ + + A++L Sbjct: 556 YVPTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDL 604 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 106/303 (34%), Gaps = 29/303 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + ++ATP L S V D V T V Sbjct: 767 EQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMSLVGVRDLSVIETPPEGRFPVQTYV 826 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 L+ E + + + +V V + + + + + +V H + + Sbjct: 827 MEHSPQLIREAVNREISREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQL 886 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D G++DVLV +++ GLD+ V+ + I +AD+ G + Q GR R+ Sbjct: 887 ERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTIIIYNADRMGLSQP----YQLRGRVGRS 942 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIA 604 + Y T K + + +R K K E G G + D+ G NI Sbjct: 943 NR---MAYAYL-TYQKDKVLTQEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNIL 995 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQ 664 + G V DM K L+ I E+ EE +I+D + Sbjct: 996 GPEQHG--------HIMAVGFDMYTKMLKDAIKEISQESQTQ------EETTKIQDDKTE 1041 Query: 665 LRE 667 + + Sbjct: 1042 VEK 1044 >UniRef50_UPI0001B42B03 transcription-repair coupling factor n=2 Tax=Listeria monocytogenes RepID=UPI0001B42B03 Length = 499 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 90/519 (17%), Positives = 197/519 (37%), Gaps = 45/519 (8%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + IR + L++ Q + G+TGS + + V +RP + + N Sbjct: 2 KGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLY 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +LY ++ + + + P+ + + + + + R+ A Sbjct: 62 HAQKLYDDLLSLMDVDRLFLY-------------PADELISSELSISSPELRGQRVEALD 108 Query: 129 AMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 +L + +V+ V+ + + P L+ + + G ID + ++L + Y + Sbjct: 109 FLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 G F VRG +IDI+P +++ +R+ELFD EV+ L FD T + + + F + P T Sbjct: 169 NTPGEFSVRGGIIDIYPI-TEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + ++ +++++ L E + ++Q L + + DLEM+ Sbjct: 228 EIILDQSYYPDIVKRLEKKMMLT---LNELKEQEDKQALIENLEEDLEMLRSGVKPD--- 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 F P +LFDYLP + +++DE + + R + + + Sbjct: 282 --MFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMET 339 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + + E IY+S + + + V +++ Sbjct: 340 VRDV-QVSHSFKKLLEGNHSPKIYLSLF----QKQMASMRVSKTTNI------VYKQMQQ 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 Q++ L +E+ N V++ AE + + L ++ L + D Sbjct: 389 FHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVP---- 444 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G ++G + G ++P + I + + Sbjct: 445 -----KYGMVQFVIGT--FQNGFELPLAKVAIISETELF 476 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 120/652 (18%), Positives = 233/652 (35%), Gaps = 66/652 (10%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 +Q ++L + + G Q + G++GS +T +A ++ Q+P + + + + +L Sbjct: 14 IEQSPEFKQLLQQRQPGTR-QLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELA 72 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ P + V F P + + A+ + + R+ A A+ +R Sbjct: 73 DDLANLLPPDRVYQF-------------PVEEVLAAEVATSSPNYRLQRVQALDALDSQR 119 Query: 135 DVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 VVV SV+ + P+ + + L + VG +D ++L+ + Y + G F Sbjct: 120 PAVVVTSVAGLRRNVFAPEFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDF 179 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG +ID++ +D+ +R++LFD EV+ L FD T + V I P T + P Sbjct: 180 AIRGSIIDVYALNTDN-PVRIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPP 238 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +K++ + K L++ Q++ R L + E + + + + Sbjct: 239 AEFSRVQAAVKQQF-DQLKAELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLV 297 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 +L DYL ADG L +D+ + G + D+ E V+Y + Sbjct: 298 YPTR-----HSLLDYLAADGALYLDDYSRLKDRAGKLADEDQGWLEEKVKYHQLVSVPSL 352 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 + Q G L S +V+ RP Q+ Sbjct: 353 SNEFAKLVKADQHAQLFGALFKKGAGNLRFSQ--LVEITSRPMQR---------FFGQMP 401 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L +E+++ + +++ + + L + G V +D V ++ Sbjct: 402 LLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGIPVIETAADQLQVNTVQ------ 455 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 LV L G +MP LV I + + ++ R Q + A R Y Sbjct: 456 ------LVA-ASLNNGFEMPAAGLVVITEGELFKQVKKRRHRAQKLANAER-----IKSY 503 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 D + HGI K + + Sbjct: 504 TDLKPGDYVVHVN---------------HGIGIFSGIKTMEVDGVHQDYMIINYRNNAQI 548 Query: 614 SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V +S ++ +I+ L G + + I D+L L Sbjct: 549 FVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDL 600 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 115/346 (33%), Gaps = 34/346 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L A + +V +H + + + +G + L Sbjct: 728 LAAGSIDIVVGTHRILSKDVQFRDLGLVIVDEEQRFGVKHKERLKEL--------KNNVD 779 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L S V D V T V Q + + I + Sbjct: 780 VLTLTATPIPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGG 839 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V E+ L+ R Y+H + E ++ D G +DVLV ++ Sbjct: 840 QVYYLHNRVSDIEETVMKLQALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSI 899 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P V+ + + +AD G + L Q GR R+ + Y + K + Sbjct: 900 IETGVDIPNVNTLFVENADHLGLAQ----LYQIRGRIGRSNR---VAYAYFM-YQPNKVL 951 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 E +R + E G G + D+ G NI + G D+V Sbjct: 952 TELGEKRLAAIRDFTELG---SGFKIAMRDLAIRGAGNILGKQQHGF--------IDSVG 1000 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRE 667 D+ L + + +G + E E EA ++ R+ Sbjct: 1001 YDLYSSMLNEAVARKQGKKRAARADAEVELGVEAYLPDSYVNDQRQ 1046 Score = 44.8 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 63/208 (30%), Gaps = 18/208 (8%) Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARK-ETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 G ++ + + G+ P+ + F + Sbjct: 575 GGNEWAKTKRRVASKVEDIADELVDLYAKREAAKGYAFPADDYLQAQFDANFPYTETRDQ 634 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 S ++EK +D ++ + + + I + ++V Sbjct: 635 LRSIKEVKRDMEKPR------------PMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVA 682 Query: 451 VTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-L 505 T ++ + L++ ++ + E E L G D++VG + + Sbjct: 683 FLVPTTVLAQQHFDTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGTHRI 742 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSER 533 L + + ++ LV + + + G ER Sbjct: 743 LSKDVQFRDLGLVIVDEEQRFGVKHKER 770 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats. Identities = 117/649 (18%), Positives = 214/649 (32%), Gaps = 66/649 (10%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L + LE G GV F ++ + L P +V+ + A + Sbjct: 5 QEKKILPVLVDRLETGAGEVVCAGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTE 64 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-R 134 + + F P +A A PS + + + R+ M E Sbjct: 65 DARFFQPADA----------RAEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLA 114 Query: 135 DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+V +V A+ P + ++ G +D A+ +L Y R + G F Sbjct: 115 PAVLVLAVDALLQKTIPPGDLCEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDF 174 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG ++D+F + R++LF + VE + F P+T + T+ P V + Sbjct: 175 SIRGGIVDLFSPFHE-APARIDLFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAK 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +RI + + +K+ + E ++ ++ M + G+E+ + Sbjct: 234 DRIGRLIAAVKK-------------RSAELNLPVSVSRDIIDRMEQGTDTEGMESLMPLV 280 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 E P TLFDYLP LLV+ + + + R ET E G R D Sbjct: 281 Y-----ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGRLATELYETAREEG-RWCVPPD 334 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 L ++ + A + +S P VV G+ D + TQ Sbjct: 335 ALYLDWQAVQKEAFKKPLLSF-PVLPVSATPEDGDNTPVVETAGVTDNSAVTLMLRTQPR 393 Query: 434 D-------LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 D LLS I + + ++ + + + +L H E + Sbjct: 394 DTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFLTSHRVP----------HESL 443 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + L G L I D + G +R R++ Sbjct: 444 DAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRH---------RSSAGK 494 Query: 547 NGKAILYGDKITPSMAKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G +Y D T + + R + + GI L D + Sbjct: 495 KGARDVYLDLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRD-----GDRL 549 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 +R V D+ + K + ++ + A+ + E Sbjct: 550 YLSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKE 598 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 103/302 (34%), Gaps = 28/302 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + ++ATP L S + D V T + Sbjct: 762 EQRFGVKHKETLKKMRTTVDVLSLTATPIPRTLHMSLSGMRDISVITTPPEHRKAIKTYI 821 Query: 429 ATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVER 485 + D ++ IR+ ++ + ++L++ VR +H +D Sbjct: 822 SEFDDAIIRTAIRKELERGGQIYFVHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTL 881 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + E D+LV ++ G+D+P + + I AD G + + Q GR R+ Sbjct: 882 ETCMMQFVNREIDMLVCTRIIESGIDIPSANTIFINRADMFGLAQ----IYQLRGRVGRS 937 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y P + A+G+ R+R K EH G + D+ G A Sbjct: 938 DEQ---AYAYLFIPRES-ALGKDARKRL---KVLMEHSDLGSGFQIAMNDLKIRGGGAAL 990 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQI 658 ++ V DM + ++Q + EL+G + N E F A I Sbjct: 991 GVSQSG-------HITAVGYDMFLQLMEQAVAELKGEPVTETLNPEINIPVSSFLSEAYI 1043 Query: 659 RD 660 D Sbjct: 1044 SD 1045 >UniRef50_UPI00006DCFD1 hypothetical protein CdifQ_04004038 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DCFD1 Length = 635 Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats. Identities = 99/661 (14%), Positives = 235/661 (35%), Gaps = 71/661 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 +N F + + + +++ + G+ K ++ DL R + + + Sbjct: 1 MNDVFLYPLQNSKEYKDIINCIKNTKGSLLVNGLLPVQKPHISYSIFNDLSRQMIFITSS 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A ++Y ++ + + Y+ D + + + + E +L Sbjct: 61 DLEAKKVYEDLSFYMED--------------KVEYLGFQDIYFYHLDAKDRNEEAKKLKV 106 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + +++V S+ A+ + L + H VG +D + +L L Y R Sbjct: 107 LLKLANKEKIILVTSIEAVLRKYIPKQVLLDSVSHYKVGDSLDLEKLTEKLVSLGYERVS 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 + G F +RG +ID+F E +R+ELFD+E++ + FD + + + + +F+I P Sbjct: 167 KIEGFGQFSIRGGIIDVFSLEY-TNPIRMELFDDEIDSIRTFDVYSQKSIDKLQQFSITP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 ++ P E+ A+ ++K+E + + T +++ ++ Y G Sbjct: 226 SREFIYP-EKTTDALVKLKKET---------------TKNTDEGTFQNIDYISSKTYFEG 269 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 ENY ++ E ++F YL D ++ +++ + R + +E G Sbjct: 270 AENYIDYIYP----EENKSIFTYLADDAIVFINDITRLKERCENYINEFRENYKLNLERG 325 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + + +++ +++ S +++ R EV Sbjct: 326 LAIKNQGKLLYHYTDLEYLVKDKSVVLNSLLPKSINNFSIKSIINFESR---------EV 376 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 +VD L+ E+ + ++++ T T A L + L + G + +R Sbjct: 377 PTFNGKVDLLVEELNRLKYNGYKIILATNTLERANKLGKDLLDKGLETTI------SKDR 430 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ V++ + G + V I D + G + RA++ Sbjct: 431 DIEIKS-----SQVIIVPAHINSGFQYKSIKFVVITDNEMIGVYK----------RASKT 475 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 N K + +Y IT + K + I+ G + Sbjct: 476 SNKKVKKGKKIESFLDLSVGDYVVHENSGVGRYTGIEQITVNAIKKDYMKIVYQGGDNLY 535 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662 K + + + + ++ + +++ + ++L E R+++ Sbjct: 536 VPIDQMDKVQKYIGAEVEKVKLNKLGTNEWTKAKAKVKKEIEDMTKDL--IELYAKREKI 593 Query: 663 H 663 Sbjct: 594 Q 594 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 123/674 (18%), Positives = 254/674 (37%), Gaps = 84/674 (12%) Query: 2 SKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQT--LLGVTGSGKTFTIANVIADLQRP 59 + L + I + + + + ++T + G+ + K I + L Sbjct: 3 NTKTTLTKPL-------KKIEGMNKFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTC 55 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 V+A ++ A + ++ F V Y PS D + I Sbjct: 56 PFVIASSEEEAEVVKEDLAFLFGSENV-------------IYYPSRDILFYNADVHSNEI 102 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAE 178 + R+ A A+++ + ++V ++ A+ P D +++ + + +G +D +++ +L E Sbjct: 103 VKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQIVIKIGDTVDLQSMSYQLIE 162 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y R + G F +RG ++DIF + + +R+EL+D E++ + F P+T + + I Sbjct: 163 NGYERVGRVEVVGQFAIRGGIMDIFSPAN-NTPIRMELWDTEIDSIRRFSPITQRTIDNI 221 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 R IYP + PRE++++A+ I++EL A VL E+ R+ + T D+E + Sbjct: 222 ERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRESGAKSAANRIKENTNEDIESI- 280 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 +G+ ++ L +LFDYL + + + ++ ++ Sbjct: 281 ----VNGLNIETQVLYAPFCDMETASLFDYLEYKKTIFITDIKKCKDKLLRVFLEYEESV 336 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 ++ +EYG LPS + EE A + Y+ P + + + ++ Sbjct: 337 KSRLEYGHMLPS-MVKFIFNREEIIAKVFEKNYIGFMPFLASDDMATTKNILEIRLN--- 392 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 E+ + +++Q A + + TK A + E LEE Sbjct: 393 -----EINSNYKGLKIFEQDLKQYKAEGKATVFLAGTKSKAAHVAEILEEQKIYTAL--G 445 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D+ D++ G +L+ L G ++ V + D + G R + + Sbjct: 446 DLT--------YDIQKG--QILIASGSLSHGFIYEDLEFVILSDRELFGKDRKVSTKKKY 495 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 G I E +E HGI G+ + I+ Sbjct: 496 KG----------------------AKIESFMELAEGDYVVHENHGI---GIFIGIEKIVT 530 Query: 599 LG--QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAA 656 G ++ K +G I + D V + + K++ L + A++ Sbjct: 531 EGVARDNLKINYEGGTLYVNINQMDLVQKYVGSEGAAPKLNMLGNPEWKKAKS------- 583 Query: 657 QIRDQLHQLRELFI 670 + R+ + + + I Sbjct: 584 KARNSVKNIAKELI 597 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/458 (13%), Positives = 136/458 (29%), Gaps = 52/458 (11%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++++ + + + + I + + I+ A Sbjct: 632 DQIDAI-------QAVKTDMESDKI--MDRLILGDVGYGKTEVAIRAAFKAILNHKQVAY 682 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q + L+ M G+ LS + + + + +V Sbjct: 683 LVPTTVLAQQHFERFLKRMESQAISVGV------LSRFRTPKQIKETLKGIESGMIDIVI 736 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G L + + ++ATP Sbjct: 737 GTHRLLSKDVLFKDLGLLIIDEEQRFGVAHKEKL--------KQMRTEVDALTLTATPIP 788 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L+ S + D V + V + DD + + I + +V + + Sbjct: 789 RTLQMSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVYFLSXRVQ 848 Query: 458 MAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + L +V H + E I+ E +VLV ++ GLD+ Sbjct: 849 NIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANA 908 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I+DADK G + L Q GR R+ Y + + E +R Sbjct: 909 NTIIIVDADKMGLSQ----LYQLRGRVGRSDKQ---AYAYLL-YKRDXILSEVAEKRLNA 960 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 K + G G + D+ G ++ + ++ K L++ Sbjct: 961 IKQFTQLG---AGFKIAMRDLEIRGAGDLLGASQSG-------HMAKIGYELYSKMLREA 1010 Query: 636 I--------HELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 I E + + F + I+D++ +L Sbjct: 1011 ILIEQGGGIEEEKIETTIEIKINAFISSNYIKDEIQKL 1048 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 292 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 45/520 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + A++ GL Q +LGV G + A + D P +++ P + Sbjct: 3 GLTEFLRETPALKTAVSGLAR-YKRQHVLGVGGGHQALVCAALARD-PAPLLIITPGERE 60 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 AA L ++ P + F + + + + + I R+ +A Sbjct: 61 AAALADDLVTLLPGRGIFVFS-------------AWELLPVQVLAYSREIGVRRMRVLEA 107 Query: 130 MLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 ++ + VV+A V A+ L P + + + L G A+ RL + Y Q Sbjct: 108 LITGTNPVVIAPVDALARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVD 167 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG + D+FP + +RVE F +E+ L FDP T + + R T+ P T Sbjct: 168 TAGQFSIRGGIADLFP-YTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATE 226 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V + +E + E + L + +RL + + L ++ + GIE+ Sbjct: 227 LVVEDDAWEAGIETLTREYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIED 286 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + TL DYL G++ V E + L+E G L Sbjct: 287 LLAYFYPQAA-----TLMDYLGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLL 341 Query: 369 PSALDNRPLKFEEFEALAP-QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 P + + F ALAP +T+Y+S +S ++ +V G L V Sbjct: 342 PGQFRLYLDREQLFAALAPFRTVYLSLFGRVGAFSRSDREIRFEVRELPGNLGRTGAV-- 399 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 L EIR+R +RV++ T A L L + G E + Sbjct: 400 --------LGEIRRRQVAGQRVVLLVGTGERARRLLNSLRQSGLAA------FQAYELGQ 445 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + V VG+ L +G ++ E L + + + G Sbjct: 446 VQPG------QVAVGVGRLNKGFEIAESQLAVLTEREIYG 479 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 81/434 (18%), Positives = 140/434 (32%), Gaps = 48/434 (11%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q E N GY Sbjct: 645 PMDRLLCGDVGYGKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHLQTFRERFN--GYPV 702 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF S R + L D +V+ + + G E Sbjct: 703 VIEMLSRFRSVREQKQV---LADLAAGKVDIVIGTHRLVQDDVQFADLGLIVVDEE---- 755 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + I ++ATP L S + D + T LD Sbjct: 756 -----QRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPV 810 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ E + + A +V + + +L+E R H + Sbjct: 811 QTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMR 870 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D G +DVLV ++ GLD+ V+ + + +AD+ G + L Q GR Sbjct: 871 EDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEADQLGLAQ----LYQLRGR 926 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y T + +GE +R + + + G G D+ G Sbjct: 927 VGRSNR---LAYAYF-TFRRDRLLGEAAEKRLRAIRDFTDFG---SGFRLAKRDLEIRGA 979 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE------- 653 N+ T+ G V +M + L++ + EL+G A EFE Sbjct: 980 GNLLGTEQHGN--------ISVVGFEMYCRLLEESVRELKGE----APPEEFETVVEVPV 1027 Query: 654 EAAQIRDQLHQLRE 667 A D + + Sbjct: 1028 TAFLPDDYIPDPEQ 1041 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 111/671 (16%), Positives = 236/671 (35%), Gaps = 77/671 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + S ++ + + L E G + + G++G+ K IA + ++ +V+ N Sbjct: 1 MKSIITEYINEDKRYQELNEVF--GKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNN 58 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 A +L ++ +F ++ + + P D E+ ++ + R+ Sbjct: 59 LYQADKLESDLLQFVEDSEIYKY-------------PMQDIMTEEFSTQSPQFMSERVRT 105 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 A+ + + + ++ + P D++ L L VG ID L +L + Y R Sbjct: 106 LTALAQEERGLFIVPLNGLKKWLTPVDMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRES 165 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 G F +RG ++DI+P +R+E FD EV+ + FD + + I I Sbjct: 166 VVSHIGEFSLRGGIVDIYPLIGK--PVRIEFFDTEVDSIRDFDVESQRSEGNIEHVDITT 223 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNEL 300 + Y+ + + ++K+ R + ++ + E +L + FD +++ L Sbjct: 224 ASDYIITEDVLKHTKHKLKQAYEDTRPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRL 283 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 E P T+ DY D ++ VDE + + + Sbjct: 284 VAF--------------MYEQPATIMDYFKEDAIIAVDEYNRIKETETTLVTEIDEFMQN 329 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 L+E G +D L++E FE L T + +++ +P Sbjct: 330 LIESGKGF---IDQSFLQYEGFENLLKPFAVTYFTLFTATMPVQLNEIIKFSCKP----- 381 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 V+ Q D + SE ++ + ++V T+ E + L E Sbjct: 382 ----VQQFYGQYDIMRSEFQRFIQNDYTIVVLAETETKKERIQSMLNEMHIPTFI----- 432 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 DT R R ++ L EG ++P + LV + + + + ++ Sbjct: 433 DTPSR-------RNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTL 485 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A K Y D + R + G++K + + G Sbjct: 486 TNA----EKIKSYQDLKVGDYVVHVHHGVGRYLG------VETLEVGGVHKDYIKLQYKG 535 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + + V ++ ++ K + + + + Q +++ E Sbjct: 536 TDQLFVPVDQMDQVQKYVASEDKSPKLN-KLGGTEWKKTKAKVQQSVEDMADELI----- 589 Query: 661 QLHQLRELFIA 671 +L++ RE+ + Sbjct: 590 ELYKAREMSVG 600 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 73/461 (15%), Positives = 149/461 (32%), Gaps = 46/461 (9%) Query: 220 EVERLSLFDPLTGQIVSTIPR-FTI-YPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 E++ P + + I + I P + + ++ A + Sbjct: 614 EIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVA 673 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + Q + +E M + + +S + + L + + +V Sbjct: 674 FLVPTTILAQQHYETLIERMQDFPI------EVQLISRFRTTKEVKETKEGLKSGFVDIV 727 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + +G R + + + ++ATP Sbjct: 728 VGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSL--------KNNVDVLTLTATPI 779 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTK 456 L S V D V T + V Q + + E + + + + +V Sbjct: 780 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKV 839 Query: 457 RMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + E L+ H ++ + E + E+D++V ++ G+D+P Sbjct: 840 QSIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPN 899 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 + + I DAD+ G + L Q GR R+ I Y + P K + ET R + Sbjct: 900 ANTLIIEDADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHP-TNKVLSETAEDRLQ 951 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 K E G G + D+ G K + D+V D+ + L++ Sbjct: 952 AIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSVGFDLYSQMLEE 1001 Query: 635 KIHELE--GLMMQHAQNLEFEE-------AAQIRDQLHQLR 666 ++E Q A +E E A I ++ ++ Sbjct: 1002 AVNEKRGIKAEKQDAPEIEIELNIDAYLPAEYIPNEQSKIE 1042 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 104/656 (15%), Positives = 220/656 (33%), Gaps = 69/656 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + Q + + L G Q + G+ GS +T IA+++ + QR + + A Sbjct: 3 LEAFMTQTAQYATIRQTLGVGQR-QLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +Q + ++ P + + A+ + R+ A +A+ Sbjct: 62 SQ-------------LVDDLANLLDDDELFDFPVEELLAAEVATSSPEYRSARIDALRAL 108 Query: 131 LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVVV S+S + L P + ++VG D A+ ++L + YA Sbjct: 109 QSDRPVVVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFAMGYAHQKLVAA 168 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG +IDI+P +D +R++ FD EV+ L FDP T + + + P T + Sbjct: 169 PGDFAVRGSIIDIYPLAAD-YPIRIDFFDTEVDSLRYFDPATQRSIDNGQTVEVLPATDF 227 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + ++ + + + LT + Q ++ + + + + Sbjct: 228 ILTADERATGATALR----TTLQAQAADLAAEDATTLTNQVQPLIDGLQKGSVDPQLLEF 283 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + +L + DYLP DG+++ + + + + + Sbjct: 284 ADYL-----FPEHHQVLDYLPDDGVVLFGDYVRLQDAERQLLEDEANWATDKLAHHQIFT 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L+ Q + G L + ++ Sbjct: 339 QQTFGGELRPIVRADKHAQIMLALFQKGMGSLRFQAMTNM-----------TTRAMQQFF 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q+ + +EI + + V++ + + + L++ + S +++ Sbjct: 388 GQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLTKSANLQPALTQLV 447 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + L+ G ++PE SLV I +A+ + +R QT+ A R Sbjct: 448 PE-------------RLQTGFELPEASLVVITEAEMFQKVTKKRPRRQTMANAERLK--- 491 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + + + G+ + Sbjct: 492 --SYTDLKPGDYVVHVNHGIGKFI-GMQTLTVDGVHQDYMTI--------------DYQD 534 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + +S + + KI++L G ++ + I D+L L Sbjct: 535 NAQLFIPVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDL 590 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/443 (16%), Positives = 138/443 (31%), Gaps = 40/443 (9%) Query: 233 QIVSTIPRFTI--YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + + P + + ++ A + Q Sbjct: 626 RTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHY 685 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + GY +E +SRF R + + D L L +V +H + Q Sbjct: 686 DTMVSRFE--GYPINVEMFSRF---RTTKQIHQAIKD-LETGQLDIVVGTHRLLSQDVKF 739 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + L + ++ATP L S V D Sbjct: 740 KNLGLVLVDEEQRFGVKHKERLKQL--------KANVDVLTLTATPIPRTLHMSMLGVRD 791 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + V Q + + IR+ +V E ++ Sbjct: 792 LSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVL 851 Query: 470 GERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R Y+H + + ++ D G++DVLV ++ G+D+P + + + +AD+ G Sbjct: 852 VPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMG 911 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y T K + E +R + K E G Sbjct: 912 LSQ----LYQLRGRIGRSNR---VAYAYF-TYQPNKVLTEVSEKRLEAIKDFTELG---S 960 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G K + ++V D+ + L + + G Q Sbjct: 961 GFKIAMRDLSIRGAGNLLGKQQHGF-------INSVGYDLYTQMLSDAVAKKRGQKTQPK 1013 Query: 648 QNLEFE---EAAQIRDQLHQLRE 667 + E EA D + ++ Sbjct: 1014 TDTTIELGVEAYLPSDYIEDEQQ 1036 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 287 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 210/650 (32%), Gaps = 65/650 (10%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 + + LE G H L G+ GS +A+++A R +VL P++ A + E+ F Sbjct: 14 ATILDALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFA 73 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVAS 141 + P+ D S + I RL + VV Sbjct: 74 SPSHA------------PLSFPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMP 121 Query: 142 VSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI 200 V+A L+ + +L G ++ +L RL ++ YA RGTF VRG ++ Sbjct: 122 VAAALQRVLGRGLFSESSCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGIL 181 Query: 201 DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 DIFP +R+E F + E + FDPLT + + + + P + Sbjct: 182 DIFPPNLS-APVRIEFFGDTAETIRTFDPLTQRSLHPLEELVLLPSREIILTD------- 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 + ++A R K ++ ++ +R + LE + Y G+E L Sbjct: 234 -GVLADIAPRLKGCCDDLEIPANRR-----REILENLKSAVYFRGVEYLQPLLHPGL--- 284 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 T+FDY P L ++D I + + + E S L E Sbjct: 285 --ETIFDYAPDASLALLD--PQAIQEAITTFGRELEDGEATARQNGLPHSPRQELYLDGE 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR 440 + L + + E + + T L + + + L +R Sbjct: 341 QLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDL--RVTVSKETTQALTPLSRSLR 398 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 Q RVL+ AE L E L + + + E D L Sbjct: 399 QWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAETVQGEAQGDASPDGVVTL 458 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + + L G + E LV I + + G ++ G Sbjct: 459 LQGD-LSRGFRLLEARLVLIAEEELFG------KRVRRRG---------------ISEVR 496 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + + + + +HGI + + G + G P+ Sbjct: 497 KKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLEYNGGDKLYLPVDRL 556 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 V + P+ + +L G+ + ++ + R + +L + Sbjct: 557 ALVQRYVGPEGSSPSLDKLGGVSWEKSK-------GKARKAIEELAGELL 599 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 136/432 (31%), Gaps = 44/432 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + E + E Y Sbjct: 651 PMDRLVCGDVGYGKTEVALRGAFKAALDGKQVGVLVPTTILAQQHFETFHERLKE--YPV 708 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + + L + +V +H + + + + Sbjct: 709 RVEALSRF----RTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLLIIDEEQRF 764 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L S + D + T +D + Sbjct: 765 GVKDKERLKAF--------RAVVDVMTLTATPIPRTLYMSMMGIRDLSIIDTPPVDRLAV 816 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA ++L+ E I + +V + E + + H + Sbjct: 817 KTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPEAKIAVGHGQMG 876 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ GE ++L+ ++ GLD+P + + + AD+ G + L Q GR Sbjct: 877 EQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQ----LYQLRGR 932 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + R + Q +E G D+ G Sbjct: 933 VGRSSQRG---YAYLLIPGEGSLTSDARERLKILQDISE----LGAGFRIATHDMEIRGA 985 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLE---FE 653 ++ ++ G + ++ + L++ I + G ++ NL+ F Sbjct: 986 GDMLGSRQSGTV--------IEIGFELYNQMLEETICRMRGEEMIEQVEPEINLKVPAFI 1037 Query: 654 EAAQIRDQLHQL 665 +RD +L Sbjct: 1038 PETYVRDTGQRL 1049 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 285 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 112/657 (17%), Positives = 221/657 (33%), Gaps = 70/657 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + + + L Q +LG++GS K + L + +++ P A Sbjct: 4 LHQTISKLKGFKEWFDTLSL-HESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQA 62 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 Q Y E+ E++ E+ V F P ++ + V+ + R+ + Sbjct: 63 TQTYEELSEWYDEDIVHLF-------------PVEESLAADFSVVSPDVVSQRIRTLDFL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIID-QRAILRRLAELQYARNDQAF 188 + +V+ +S I L P + K + L +G I+ A + RL EL Y R + Sbjct: 110 SRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMGSEIESMDAFVERLVELGYRRENMVA 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++DI+P + LR++ FD EV+ + F+ T + + I I P T Sbjct: 170 TPGEFALRGSIVDIYPL-DQEYPLRLDFFDTEVDSIRAFNAETQRSMDVIEEVRILPATD 228 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 +E + +A +I K + + + Q LE I + Sbjct: 229 LPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVSSIQQAIDAQLENGE-------IPS 281 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + +L DY+ D L++D+ I + + K +E G Sbjct: 282 NLPYFLECI-YPEKTSLLDYVSKDAYLIIDDYARFIEKSKSLEEEAGYWKTHHIETGAIA 340 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + E+ +T G L D + + T + Sbjct: 341 SGLSLVQDGRKLLKESPLKRTYLAIFQKGLGRLSL---DAIHPITTRT--------MTQF 389 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 +Q+ + E + V+V + A+ + + + + + Sbjct: 390 FSQMPMVKVEADRWKKQGATVIVLVDDAKRAQKVEQTFADFDIKSVISNG---------- 439 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + G+ ++VG + G ++PE + + + L Q I A R + Sbjct: 440 --TVLEGQLQIMVG--KMHNGFELPEDKFAILTERELFNKLTKRAPRNQKISNAERLKSY 495 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + GD + + + E GI ++ Sbjct: 496 TELAVGDYVVH------VNHGVGVYQGMETLEIGGIHQDYMSIH--------------YQ 535 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + V +S A K+++L G + + I D+L +L Sbjct: 536 DGGNLFVPVSQIKLVQKYVSSDAKVPKLNKLGGTEWAKTKRKVAAKIEDIADELIEL 592 Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 73/453 (16%), Positives = 140/453 (30%), Gaps = 48/453 (10%) Query: 230 LTG---QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 T + V+ I P + + ++ A + Sbjct: 622 ETQDQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPTTI 681 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 Q + ++ ++ + G LS + L + +V +H + Sbjct: 682 LAEQHYENFVQRFSDYPFKIG------LLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLL 735 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + +G + L + ++ATP L S Sbjct: 736 SKDVQFLDLGLLIVDEEQRFGVKHKERLKQL--------KSQVDVLTLTATPIPRTLHMS 787 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLT 463 V D V T + V Q + + I + A +V E Sbjct: 788 MLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKA 847 Query: 464 EYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 + L G RV +H + I+ GE+DVLV ++ G+D+P V+ + I Sbjct: 848 DELRVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIE 907 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 +AD G + L Q GR R I Y + K + E +R + + E Sbjct: 908 NADYMGLSQ----LYQLRGRVGRTNR---IAYAYLM-YQPDKVLTEVSEKRLQAMRDFTE 959 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G G + D+ G K + D+V D+ + L + + + +G Sbjct: 960 LG---SGFKIAMRDLSIRGAGNLLGKQQHGF-------IDSVGFDLYSQLLSEAVLKKQG 1009 Query: 642 LMMQHAQNL--------EFEEAAQIRDQLHQLR 666 ++ + + A+ I+D+ ++ Sbjct: 1010 KEVKSDEETVEIDLQIDAYIPASYIQDERQKIE 1042 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 98/604 (16%), Positives = 203/604 (33%), Gaps = 53/604 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I +++ + Q + +TGS K A +I +P +++ ++ LA + +++ + Sbjct: 33 IEAVDKAISYKEWPQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSW 91 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 P V YF PSS+ + + R+ + + VV Sbjct: 92 LPGEDVLYF-------------PSSEWLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVV 138 Query: 141 SVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ + + +L L G D + + ++L+ Y R D +G F +RG + Sbjct: 139 PALAVNQRSFSRRRWQEYILELKEGTSYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGI 198 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +DI P + + LRVE FD+EV+ + +FD T + T+ I P V E + + Sbjct: 199 MDIAPLDGE--PLRVEFFDDEVDSIRVFDLETQKSTETLKSVKIPPALEVVIRPEELEKL 256 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 E++ + + L + + +++ ++ Q E + I Y L Sbjct: 257 GWEVRAQARKQAGRLNRSGRSDVAEQVMKQAQRIEERLKTGRVDESIYPYLSLLEEPL-- 314 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 F L D +++DE Q+ + + G S D Sbjct: 315 ---EPFFSLLSQDHYVILDEPLRLKEQLEFQQKERLEEYTQALAKGEEFYSPEDQFVSYE 371 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 + + +T + + + RP + + L+ EI Sbjct: 372 QFLRYGEKHPFVLISTLPREIPGVAPKRIFNLNARP---------LTGFMGKTGILVDEI 422 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 V + + AE + + L + G ++ E+ ++ G V Sbjct: 423 EHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALA----------KKHELHEPVQEG--GV 470 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 V + L +G ++P L+ + +A+ + A G+ + + D Sbjct: 471 YVYSSSLDQGFELPLSKLIVLSEAEIY----KRERKAAVKRKKAPEKTGQRLQFADLKPG 526 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + + ++ I G+ K + GQ+ + + Sbjct: 527 DFVVHVHHGIGQFMGIER------IAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 620 PDNV 623 D Sbjct: 581 SDAE 584 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/412 (16%), Positives = 121/412 (29%), Gaps = 35/412 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E Sbjct: 668 PMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVAVLVPTTILAQQHFNTFQERFM------ 721 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + LS + + L + +V +H + + + Sbjct: 722 GYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKLVSDSIKFKDLGLLIVDEEQRF 781 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + +SATP L S V D + T D Sbjct: 782 GVAHKEKLKTL--------KANVDVLTLSATPIPRTLHMSLVGVRDLSIIETPPEDRFPV 833 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 VA D++ E IR+ +V E + +L + RY H + Sbjct: 834 QTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMS 893 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + E DVLV ++ GLDMP V+ + I +AD+ G + L Q GR Sbjct: 894 EKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGLGQ----LYQLRGR 949 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + K + E +R + E G GL + D+ G Sbjct: 950 VGRSNRRAYSYFLY----KPQKVLTEVAEKRLAAIREFTEFG---SGLKIAMRDLEIRGA 1002 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 + + ++ + L++ + EL+G ++ E Sbjct: 1003 GNLIGAQQ-------HGHLAALGFELYSQMLKEAVQELKGEQVEEKIETSIE 1047 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 113/667 (16%), Positives = 232/667 (34%), Gaps = 76/667 (11%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA-DLQRPTMVLAPNK 67 + + + I + G + G + K+ I + +R +++ ++ Sbjct: 2 NLLTKPLLELKEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDE 61 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A ++ +MK + + + P+ D I RL Sbjct: 62 IRAGEIQTDMKLYDKKAVI---------------YPAKDIMFFAADVHGNAIISGRLEVL 106 Query: 128 KAMLERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQ 186 K ++E + ++ S+ A + + + ++ L+V D + RRL+EL Y + Q Sbjct: 107 KRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQ 166 Query: 187 AFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPK 246 +G F VRG++ DIFP +++ R+E + +E++ + FD + + + + +YP Sbjct: 167 VSGKGQFAVRGDIFDIFPL-TEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPA 225 Query: 247 THYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGI 306 T + ER + ++++ +E K K E R+ + + + G GI Sbjct: 226 TEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGI 285 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF 366 ++Y + + T FDY + + +DE + + R + G+ Sbjct: 286 DSYINYF-----FDETETFFDYFNEEDIFFIDEPIRIEEKGKAVSFEWRESMTNRLTKGY 340 Query: 367 RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 L D + L ++ + + + D + R V Sbjct: 341 ILSKQADTIWDYKKVLAKLESKSTVLLSLLETRTGDIKAKQRFDVLSRN---------VN 391 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 P + L+ ++ + +V+V + +K AE L E E YL T ER+ Sbjct: 392 PYNNSFETLIKDLTRYKKEGYKVVVVSSSKVRAERLAEDFRERELMANYL----STDERV 447 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + GE V+ LR G + P + I ++D G + + + Sbjct: 448 PV-----SGE--VVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKKTN------------ 488 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 K +I E +E HGI G+ + + G Sbjct: 489 --------RKKKKIDGASIASFSELHEGDYVIHENHGI---GVYRGIEQFTVEGVTKDYV 537 Query: 607 KAKGRGK---SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 K G P D + S + KI ++ G + ++ ++R + Sbjct: 538 KVDYSGDVSIFVPTTNLDVLQKYSSANGAKPKIDKIGGQAWKKTKS-------KVRQSIS 590 Query: 664 QLRELFI 670 ++ + Sbjct: 591 EIARDLV 597 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 131/366 (35%), Gaps = 37/366 (10%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 FLS + + L A + +V +H + + +G Sbjct: 710 FLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAEIKYKDLGLLIIDEEQRFGVSHKEK 769 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + +SATP L S + D V +D I V Sbjct: 770 IKKLRENVD--------VLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEH 821 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEI 488 D+++ E I + N +V ++ L E G RV + H ++ E I Sbjct: 822 DDEIIREAINREIGRNGQVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNERELERI 881 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + GE DVLV ++ GLD+ V+ + I DADK G + L Q GR R+ Sbjct: 882 MIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLSQ----LYQLRGRVGRSSR- 936 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + + + E +R K + G G + D+ G K+ Sbjct: 937 --TSFAFLM-YKRDRMLKEIAEKRLAAIKEFTDLG---SGFKIAMKDLEIRGAGNLLGKS 990 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM-----QHAQNLE---FEEAAQIRD 660 + + V D+ K L +++ L+G + + A ++E + A IR+ Sbjct: 991 QSG-------HMEAVGYDLYCKMLNEEVKRLKGEKVAADEFETAVDIEASAYIPADYIRN 1043 Query: 661 QLHQLR 666 ++ +L Sbjct: 1044 EVARLE 1049 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 105/676 (15%), Positives = 232/676 (34%), Gaps = 74/676 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 + + F+P + + +E +DG + G + K + + ++ +V+ + Sbjct: 1 MKAIFEPVYNTAGVEQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSD 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + F N Y P+ D I R+ Sbjct: 60 EGKARDMAEDARFFNGGN--------------VMYYPAKDVIFYNADVQGRQIAGERIRC 105 Query: 127 TKAM--------------------LERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGM 165 A+ + +V ++ I + P D + + +++L G Sbjct: 106 IAAIIDRLNKSDIVKSGTEKSTEEASDGPLTIVTTIDGISDMLLPVDRFKRAVINLKKGD 165 Query: 166 IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLS 225 I+D + ++L + + R +G F +RG +IDIF +D+ +R+EL+D+E++ + Sbjct: 166 ILDVEDMAKKLTAMGFERFGMVEAKGQFAIRGGIIDIFS-YTDEAPVRIELWDDEIDSIR 224 Query: 226 LFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 FD + + + +T++P T ++ + I Q +E+I+ E + K+ + + +++ Sbjct: 225 AFDADSQRSIENYKSYTVFPATEFLFTEDEIEQGIEKIRHEKDEQMKLFGADKRKRTKEQ 284 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA-DGLLVVDESHVTI 344 + + + L +YS+F+ + +L +Y P D L+VVDE Sbjct: 285 IEAGNHLNRMFDDALRTG----DYSKFIYTFA--DRVSSLAEYFPKGDTLIVVDEPVRLK 338 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + +E G+ LPS ++ V T Sbjct: 339 EHSDMTFYEYSESMKNRLESGYVLPSQTHMFMDMETAVLSMNGHKQLVLTTL-------- 390 Query: 405 GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + + + + L +IR+ VL+ ++ A + + Sbjct: 391 -EYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKYKRNKYAVLLVCSSRTRANRIVD 449 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L G Y + + + G V+V L G + P V I + D Sbjct: 450 DLGRLGIESFYT---------EDSNKSMAGG--LVMVTYGSLHRGFEYPLQGFVCIAEND 498 Query: 525 KEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + +R + +GK I +++ + K + + G+ Sbjct: 499 IFTEKKRKRVKK-------KEYDGKNIAGFNELNIGDYVVHENYGIGQYKGIEKIKVEGV 551 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGK-SRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + D + T+ K + VE + + ++ + Sbjct: 552 EKDYIKISYAD--NSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSKVHSAV 609 Query: 644 MQHAQNLEFEEAAQIR 659 + A++L A + R Sbjct: 610 EEVAKDLVELYATRQR 625 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 121/351 (34%), Gaps = 38/351 (10%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L + +V +H + + + +G + Sbjct: 744 IEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKL--------KN 795 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAA 444 + +SATP L S + D V +D + V D+++ E I + A Sbjct: 796 NVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREAITRELA 855 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N +V R ++ +++E V Y H + E +I+ D GE DVLV Sbjct: 856 RNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGEIDVLVS 915 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+ + + I DAD+ G + L Q GR R+ Y + Sbjct: 916 TTIIETGMDISNCNTMIIEDADRFGLSQ----LYQLRGRVGRSSR---TAYAFLL-YRRD 967 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPD 621 K + E +R + + G G + D+ G N+ G Sbjct: 968 KVLTEVAEKRLSVIREFADFG---SGFKIAMKDLEIRGAGNVLGNSQHG--------HMA 1016 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL-------EFEEAAQIRDQLHQL 665 V D+ K L Q ++ L+G+ ++ + A I+ + +L Sbjct: 1017 AVGYDLYCKMLNQAVNNLKGIKNEYEFETTIDVDVDAYIPATYIKSEYQKL 1067 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 133/681 (19%), Positives = 225/681 (33%), Gaps = 81/681 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 G +R L E +E G+ ++ + GS F IA + L RP +VL+P + A + + Sbjct: 10 GPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETF 69 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F V + P D ++ +E +R+ +L Sbjct: 70 QDLSLFLGSGKVLLY-------------PPWDIQTTDMFALQRDVELVRMEVLARLLTDE 116 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V+VAS+ A+ P L L L G + + ++ +L Y R +G F Sbjct: 117 PAVIVASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEF 176 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +RG V+DIFP +D LR+E +++E L FDP + + F + P + Sbjct: 177 SLRGHVLDIFPPL-EDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSE 235 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD-------LEMMNELGYCSGI 306 ER +A++ I+ AA ++L E T F+ E + S Sbjct: 236 ERRQRALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPT 295 Query: 307 ENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG-DRARKETLVEYG 365 EN + T FDYLP + +V+D++ + DR + E Sbjct: 296 EN-----ATATQAVRLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGK 350 Query: 366 FRLPSA------------LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 F L L E AL T Y S G + + Sbjct: 351 FYLEREASYVTKDAFIKDLRRFQRMILEGLALGRLTEYASGN-GEKTQASQYESLPLPLA 409 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L D T + L+ IR+ V K + + L + V Sbjct: 410 TDPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPV 469 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 R + I VL + L P++ L AI + + G Sbjct: 470 RTPEGSL-------ISEAFLHSGPGVLSLREGRLSRSFLFPDLKLAAISEEELFGK---- 518 Query: 533 RSLIQTIGRAARNVNGKAI--LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 + GR R+ +GD ++EHGI Sbjct: 519 ----KITGRRIRSAREGYFLRSFGDLKEGDYV---------------VHKEHGIGLYQGL 559 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 +K+ + G PI D + + P+ K+ +L G + Sbjct: 560 QKLSVGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRE- 618 Query: 651 EFEEAAQIRDQLHQLRELFIA 671 +++ + ++ E +A Sbjct: 619 ------RVKKSIQEVAEELVA 633 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 124/402 (30%), Gaps = 37/402 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ + Q Q M + Y Sbjct: 684 PMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSRMKD--YPI 741 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE +RF ++ + L + +V +H + + + + Sbjct: 742 RIEALNRF----KSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEEQRF 797 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 G L + ++ATP L S + D + T D I Sbjct: 798 GVAHKEKLKKL--------RTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTI 849 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + + + + IR+ A N +V R + +E+ +H + Sbjct: 850 KTYVLEFNEETIREAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMK 909 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ E +VLV ++ GLD+P + + + AD+ G + L Q GR Sbjct: 910 PREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQ----LYQIRGR 965 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL-G 600 R+ Y + P + ++R + E G G D+ G Sbjct: 966 VGRSSEE---AYAYLLVPK-GVLLSRDAQKRLQVIMDFSEPG---SGFRIASSDMEIRGG 1018 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 N+ T G V ++ + ++Q I E++G Sbjct: 1019 GNLLGTSQSG--------HVSAVGYELYTELMEQTIREIKGE 1052 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 113/656 (17%), Positives = 222/656 (33%), Gaps = 56/656 (8%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF + E +R L L DG A +LG K I + A +V+ ++ Sbjct: 7 AFFEPFETLEEMRELRRDLRDGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKR 65 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A QL E++ F Y P+ D + + + + R+ A +A Sbjct: 66 ARQLAEELEFFTEN---------------VFYYPAKDLLFYQSDIRSNVLTRQRMQAVEA 110 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + + + V+V + SA+ P Y K ++ + G + L Y + Sbjct: 111 LRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVE 170 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIV---STIPRFTIYP 245 G F VRG +ID+FP +D +R+EL+ +EV+ + LFDP + + + I P Sbjct: 171 HPGEFAVRGGIIDVFPL-TDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVP 229 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V E + + +E I+ + E+ K E R+ +E + Sbjct: 230 SAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQ 289 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E++ + + + +L DY+P DG++ +D + + +E G Sbjct: 290 VESHLTYFT-----DQTLSLIDYIPEDGVIFLDGFQELMASGKVIMEEFSDSMTRRLEEG 344 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + L + + + + +V + I + Sbjct: 345 YILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGL---EVREHFHI------RIRQG 395 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + LL ++R+ +++ ++ A L + L + V Y V+ Sbjct: 396 SVYNNSYELLLKDLREYKKNRRKLVYVGNSRTRARRLADDLLQENLNVFYTEDPEHEVK- 454 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E +++V L G ++ + V + + D G R R R+ Sbjct: 455 ----------EAEIMVTRGSLSAGYELTDAGFVLLTEEDLFGGRRKRRKRG------RRH 498 Query: 546 VNGKAIL-YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 G+AI + +K E +T + + D I Sbjct: 499 REGEAIASFAQLHEGDYVIHENHGLGIYRGMEKI-EVDQVTKDYIKIEYADSGI--LYIL 555 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 ++ K + + + ++ + A+ L A + D Sbjct: 556 ASQMDLLQKYAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQED 611 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 21/277 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + +SATP L S + D + ++ V Sbjct: 764 EQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIRDMSILDEAPMERTPIQTFV 823 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 D+++ E + + A ++ D+T L++ Y H + Sbjct: 824 FEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQKLLPEAHVAYAHGRMSQTRL 883 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 I+ D GE D+LV ++ GLD+ V+ + I DAD G + L Q GR R+ Sbjct: 884 ENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADNMGLSQ----LYQLRGRVGRS 939 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + K + E +R K + G G + D+ G Sbjct: 940 NRTAYAFFMY----RRGKLLKEVAEKRLLAIKEFSDLG---SGFKIAMRDLEIRGAGNVL 992 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 +++ ++V D+ K L + + + +G Sbjct: 993 GESQSG-------HMESVGYDLYCKMLGEAVRQEKGE 1022 Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 59/161 (36%), Gaps = 6/161 (3%) Query: 379 FEEFEALAPQTIYVSATPGNYEL-EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + Q + A P + + V + + ++D +I + + L Sbjct: 614 YAYGPDTVWQREFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALR 673 Query: 438 EIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 + A ++V+ T ++ + + + + +V L + ++ + + +L Sbjct: 674 AAFKAAQEGKQVVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELA 733 Query: 494 LGEFDVLVGINLL-REGLDMPEVSLVAILDADKEGFLRSER 533 G D+++G + + ++ L+ I + + G E+ Sbjct: 734 SGRVDIVIGTHRALSRDVVFRDLGLLIIDEEQRFGVRHKEK 774 >UniRef50_A9U6S5 Predicted protein (Fragment) n=6 Tax=cellular organisms RepID=A9U6S5_PHYPA Length = 804 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 240/371 (64%), Positives = 282/371 (76%), Gaps = 3/371 (0%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 I+ EL R + L KLLE QRL QRT++D+EMM E+G+CSGIENYS L+ R G Sbjct: 7 NIERELEERLEELRSQGKLLEAQRLEQRTRYDIEMMKEVGFCSGIENYSGPLTFRERGAT 66 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P TL DY P D L+VVDESHVT+PQI MY GDRARK LVE+GFRLPSALDNRPL FEE Sbjct: 67 PYTLLDYFPDDMLIVVDESHVTLPQIRAMYNGDRARKTVLVEHGFRLPSALDNRPLTFEE 126 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 FE+ Q IYVSATPG YE+E +V+Q++RPTGLLDP+IEVRP Q+DDL+ EIR+ Sbjct: 127 FESKVNQIIYVSATPGPYEIEHCDT-MVEQIIRPTGLLDPVIEVRPTEGQIDDLIGEIRE 185 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 R +ERVLVTTLTK+MAEDLT+YL+E G +VRYLHSDI T+ERM I+RDLRLG F VL+ Sbjct: 186 RIDRDERVLVTTLTKKMAEDLTDYLKEIGIKVRYLHSDIKTLERMAILRDLRLGTFHVLI 245 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 GINLLREGLD+PEVSLVAILDADKEGFLRSERSLIQTIGRAARN G ++YGDKIT SM Sbjct: 246 GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNSEGFVLMYGDKITESM 305 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 KAI ET+RRR Q YNE+HGITPQ + KKV D+ +A++KA G P + Sbjct: 306 DKAIKETQRRRTMQIAYNEQHGITPQTIRKKVRDV-IEATKVAESKADPFGAC-PECDGL 363 Query: 622 NVPMDMSPKAL 632 V M + P+ L Sbjct: 364 GVKMIVDPELL 374 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 110/659 (16%), Positives = 228/659 (34%), Gaps = 67/659 (10%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 ++ + +RL EG+ Q + G G+ +TF +A V L RP +V+ N Sbjct: 1 MSKNIFSLMQENSEFKRLLEGINKK-RIQLIYGSYGTARTFLMATVAKALNRPLLVITEN 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + +A ++ +++ F + +F + ++ R+ Sbjct: 60 EQVAREIAEDLEFFLGDKTSRFFYREGFLFDLT-------------VREGGELKASRIEL 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 K + V + A+ P + + L VG +++ ++R L+++ Y R D Sbjct: 107 LKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELIRYLSQIGYERVD 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F RG ++D++ ++ R E F +E++ L D + + + + IYP Sbjct: 167 QVEAPGQFSQRGGIVDVYVPG--EVPFRAEFFGDEIDSLRALDVESQRSQANLNEVVIYP 224 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 V + +++ ++I ++ + K L++ NK RL ++ E++N LG Sbjct: 225 AEVAVAEEDLLLEVKQKISADIEQQVKKLIQQNKREAAGRLKEKGA---EVLNILGKSEV 281 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 IE + +L DY + L+ +DE QI + + R + G Sbjct: 282 IEKLLPYFWSG------VSLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGG 335 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + LP + + + L + +++ D + R Sbjct: 336 YTLPKQAEVFYEEEQLMALLRGRIAVITSLLPKTPRFIGDYDPHNFAGRKPPN------- 388 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + +I+ A N R+ + + A L L + ++ E+ Sbjct: 389 --YLGKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFV-------EK 439 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E+ R + +G+ +L G + P+ L+ D + G R +G A Sbjct: 440 FEVEIAPRE----IKIGLGVLNSGFEFPQQKLLVYTDVELAGRAVKARVTKAVLGERA-- 493 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + +P + K E G L G++ Sbjct: 494 --------EEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAY-----QGEDRLY 540 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSP------KALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + G + V D P +S + ++ ++ M + L + A+ Sbjct: 541 VPPEQVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKP 599 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 129/415 (31%), Gaps = 42/415 (10%) Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 ++ A Q E SG R LS Sbjct: 658 ALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKER------FSGYPVEIRLLSRFQTARE 711 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + L + +V +H + Y + +G L + Sbjct: 712 QKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVD- 770 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IR 440 + ++ATP L + + D V T + V + ++ + IR Sbjct: 771 -------VLTLTATPIPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIR 823 Query: 441 QRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFD 498 + +V +++ +++ H + + ++ + G++D Sbjct: 824 RELGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYD 883 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 VLV ++ G+D+P V+ + I +AD+ G + L Q GR R+ I Y + Sbjct: 884 VLVSTTIIETGIDLPNVNTLIIKNADRFGLAQ----LYQLRGRVGRSNR---IAYAYLM- 935 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 K + E +R K E G GL + D+ G + Sbjct: 936 YEKDKVLREAAEKRLAAIKEFTEFG---SGLKLAMRDLEIRGAGNLLGPEQ-------HG 985 Query: 619 EPDNVPMDMSPKALQQKIHELEGLM--MQHAQNLEFEEAA-----QIRDQLHQLR 666 V DM K LQ+ + EL+G + + LE A I D+ ++ Sbjct: 986 HIAAVGFDMYMKLLQETVAELKGQVTSEEVEPQLELNLTAYIPESYIPDEKQKIE 1040 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 120/667 (17%), Positives = 215/667 (32%), Gaps = 80/667 (11%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRP 59 + KP + + PSG I + L D L ++ G + GS + I N + Sbjct: 18 IQKPNGMTNPTFPSGS---LIPLTQPPLSDRLGNRQYWGNLHGSAQALAIVNAARNYAGL 74 Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 ++V+AP+ + A +L E+ F + P ++ +T S ++ I Sbjct: 75 SLVIAPDTSSAIRLQTELSFFTGGDEQL----------PVLHLADWETLPYDSISPHQDI 124 Query: 120 EQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAE 178 RL + R ++V ++ + P YL L L VG +D + L Sbjct: 125 ISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLMLAVGEQLDIDQLRHNLER 184 Query: 179 LQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTI 238 Y D ++ G F VRG ++DIFP SD + R++LFD+EVE L FDP T + + Sbjct: 185 AGYHAVDTVYEHGEFAVRGALLDIFPMGSD-LPYRIDLFDDEVETLRTFDPETQMTIDKV 243 Query: 239 PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + P + + I ++ E K + ++ Sbjct: 244 EKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKEC-----------------PVFQDIS 286 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK 358 G+E Y LFDYLP + L+ + + + R Sbjct: 287 AGISPPGVEYYLPLFFDSC-----SNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYES 341 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + LP + + ++S N LE+ G +P L Sbjct: 342 RRVDPLRPLLPPKDIYLSIDELYTQLKPYSRTFIS----NDILEERAGHYNFASCQPPNL 397 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 +R A Q + + RVL + E L E L R Sbjct: 398 P-----IRAQAEQPLAAIEAFL--MEYHGRVLFCAESAGRRETLLELLGRIRVRPAPA-- 448 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 E + + + + I L +GL + V I ++ G ++ Sbjct: 449 --------ESWQAFLSSKESIAITIAPLEQGLQQQQPDTVLIAESQLFGERIQQQRRR-- 498 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + + + +HG+ + + Sbjct: 499 ----------------KQAQDNSELVVKNLTELKIGAPVVHIDHGVGRYRGLETITVDNQ 542 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + + A P+ + + +H+L Q A+ + A QI Sbjct: 543 TNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKLGSESWQKAKR---KAAEQI 599 Query: 659 RDQLHQL 665 RD +L Sbjct: 600 RDTAAEL 606 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 63/437 (14%), Positives = 136/437 (31%), Gaps = 38/437 (8%) Query: 229 PLTGQIVSTIPRFTIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + + + + P V + ++ A Sbjct: 641 PDQQRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLA 700 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + + E + IE SRF + + + + L + ++ +H + Sbjct: 701 QQHYESLKDRFAE--WPITIEVLSRFRTTKEV----NQVLERLAEGKVDIIVGTHKLLQP 754 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G R + + + + ++ATP L S Sbjct: 755 DIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEID--------ILTLTATPIPRTLNMSMA 806 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T + V T + ++ E I + +V E + Sbjct: 807 GIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARE 866 Query: 466 LEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E R H + + ++ D F+++V ++ G+D+P + + I A Sbjct: 867 LQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRA 926 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + Y +TP +A+ + +R + E+ G Sbjct: 927 DKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPER-RAMTDDAVKRLEAISAAEDLG 978 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GL 642 G D+ G + + + + + + L + + + G Sbjct: 979 ---AGFTLATYDMEIRGAGELLGEEQSG-------QIQTIGFSLYMEMLDRAVKAIRQGK 1028 Query: 643 MMQHAQNLEFEEAAQIR 659 Q L+ +R Sbjct: 1029 QADIEQALKESIDINLR 1045 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 107/648 (16%), Positives = 214/648 (33%), Gaps = 70/648 (10%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + L LE G + G++GS KT ++ ++ +++ N+ A +L ++ Sbjct: 11 PELSALWPKLETGR--HLVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLS 68 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + V F P D + A + R++A + + ++ Sbjct: 69 SLLGDALVYDF-------------PVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGII 115 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V S++ + P + L + + +D + + ++L + Y R+ G F +RG Sbjct: 116 VTSLAGYKRILPAPAAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRG 175 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P DD +R+ELFD E++ + FD T + + + + I P T + + + Sbjct: 176 GIIDIYPLNQDD-PIRIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLT 234 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A I ++ K+ + T L +L EN + L Sbjct: 235 DAGARIGKQ------ATAYKAKVKDAAAKQAITDGLLTTSQQLQALERPENLA--LYAPE 286 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + DYL D L+ D+ + + + L E G RL N + Sbjct: 287 LYPEHHRITDYLAGDALVAFDDYSRLLDSDTNLVQDTAEWYSQLQEEG-RLLPKTPNPTI 345 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + P+ G +L V P V+ +Q+ L + Sbjct: 346 QALNQRDRHPRLYLSLFQKGMGQLRLDSLTNV-----------PSRNVQQFFSQMPLLKT 394 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 E + + V+ K + L+ L + L G+ Sbjct: 395 ETDRWVKQKQTVVFLVSDKNRLDKLSATLHDFEISNVVTE-----------PNQLLSGKV 443 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 + L+ G ++P++ LV + + + + R+ QT+ R Sbjct: 444 Q--LTDGSLKNGFELPDLKLVVVTEHELFNARQRRRARHQTLANTER-----------LR 490 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + K +Y + G+++ + I+ + + Sbjct: 491 SYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIPVDQLNLVQKY 550 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 V D +++L G Q + I D+L L Sbjct: 551 VSADGK---------TPNVNKLGGTEWQKTKRKVAARIEDIADELIDL 589 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 115/365 (31%), Gaps = 34/365 (9%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS L + +V +H + + + +G + Sbjct: 698 IGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHK 757 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + ++ATP L S V D V T + V Sbjct: 758 ERIKQL--------KSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVM 809 Query: 430 TQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERM 486 Q ++ E I + +V E LEE Y H + + Sbjct: 810 EQNPGVIREAIEREMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLE 869 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +I D G +DVLV ++ G+DMP + + I +AD G + L Q GR R+ Sbjct: 870 NVIYDFLHGAYDVLVTTTIIETGVDMPNANTLIIENADHYGLSQ----LYQLRGRIGRSS 925 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + Y + K + E +R + K E G G + D+ G Sbjct: 926 R---VAYAYFM-YQPMKVLNEVAEKRLQAIKDFTELG---SGFKIAMRDLSIRGAGNLLG 978 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQIRDQL 662 K + D+V D+ + LQ+ +++ G +L E A D + Sbjct: 979 KQQHGF-------IDSVGYDLYTQMLQEAVNKRRGLKTVQKTDAEIDLGLE-AYLPTDYV 1030 Query: 663 HQLRE 667 R+ Sbjct: 1031 ADSRQ 1035 Score = 46.3 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 18/208 (8%) Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARK-ETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 G +I + + E G+ D + +EF Sbjct: 564 GGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQ 623 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 SA ++E +D ++ + + L + ++V Sbjct: 624 LRSAKEIKRDME------------KPKPMDRLLVGDVGFGKTEVALRAAFKAVDYGKQVA 671 Query: 451 VTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-L 505 + T ++ + + + + ++ L + I+ L+ G D++VG + L Sbjct: 672 ILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNGTIDIVVGTHRL 731 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSER 533 L + + ++ L+ I + + G ER Sbjct: 732 LSKDVAFRDLGLLVIDEEQRFGVKHKER 759 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 105/662 (15%), Positives = 228/662 (34%), Gaps = 78/662 (11%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + + + L++ G + + G++ S K IA Q+ +++ N A ++ Sbjct: 10 KEDKRFQELDQVF--GQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEA 67 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 ++ ++ + + P D E+ ++ + + R+ A+ Sbjct: 68 DILQYVSGEEIYKY-------------PVQDIMTEEFSTQSPQLMSERVRTLTALAHGEK 114 Query: 136 VVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 + + ++ + P +++ + L VG ID L +L + Y R G F Sbjct: 115 GLFIVPLNGLKKWLTPVEMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFS 174 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG +IDI+P +R+ELFD E++ + FD T + + I + Y+ E Sbjct: 175 LRGGIIDIYPLIG--SPVRIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDE 232 Query: 255 RIVQAMEEIKEELAARRKVLLEN-----NKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 I ++K R + ++ + E +L + T FD +++ L Sbjct: 233 VISHLQTQLKAAYEDTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAF------ 286 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 + P T+ DY D ++ VDE + + L+E G Sbjct: 287 --------MYDQPSTIIDYFANDVVIAVDEYNRIKETEETLTTEVDDFISNLIESGNGFI 338 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 ++++ FE L + T + ++ +P V+ Sbjct: 339 GQ---SFMQYDGFETLLDERPVAYFTLFTSSMPVELDHIIKFSCKP---------VQQFY 386 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 Q D + SE ++ + ++V T+ E + L E V H D Sbjct: 387 GQYDIMRSEFQRFIHNDYAIVVLVETETKVERIQSMLNEMHIPV-VTHID---------- 435 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + G+ V+ G L EG ++P + LV I + + + ++ + K Sbjct: 436 QASTSGQAVVVEGS--LSEGFELPYMQLVVITERELFKTKQKKQRKRTKTM----SNAEK 489 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y D + R + ++ + + G + Sbjct: 490 IKSYQDLNVGDYVVHVHHGVGRYLG------VETLEVGEQHRDYIKLQYKGTDQLFVPVD 543 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 669 + + V ++ ++ K + + + + Q +++ E L++ RE+ Sbjct: 544 QMDQVQKYVASEDKSPRLN-KLGGTEWKKTKAKVQQSVEDIADELI-----DLYKQREMS 597 Query: 670 IA 671 + Sbjct: 598 VG 599 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 152/472 (32%), Gaps = 54/472 (11%) Query: 217 FDEEVERLSLFD--------PLTGQIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEE 266 F + E S F+ P + + I P + + ++ Sbjct: 602 FGPDTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAA 661 Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 A + + Q + +E M + + +S + Sbjct: 662 FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFP------VEIQLISRFRSTKEVKETK 715 Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + L + + +V +H + + + +G R + Sbjct: 716 EGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTL--------KNN 767 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAI 445 + ++ATP L S V D V T + V Q + + E + + + Sbjct: 768 VDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSR 827 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 + +V + + E L+ H + + E + E+D+LV Sbjct: 828 DGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTT 887 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I +AD+ G + L Q GR R+ I Y + P+ K Sbjct: 888 TIIETGVDVPNANTLIIEEADRFGLSQ----LYQLRGRVGRSSR---IGYAYFLHPA-NK 939 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + ET R + K E G G + D+ G K + D+V Sbjct: 940 VLNETAEERLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGF-------IDSV 989 Query: 624 PMDMSPKALQQKIHELEGLMMQH--AQNLEFEE-------AAQIRDQLHQLR 666 D+ + L++ ++E G+ + ++E E A I+++ ++ Sbjct: 990 GFDLYSQMLEEAVNEKRGIKEETPDVPDVEVELNLDAYLPAEYIQNEQAKIE 1041 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 265 bits (676), Expect = 6e-69, Method: Composition-based stats. Identities = 89/656 (13%), Positives = 199/656 (30%), Gaps = 63/656 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L + + GV + ++ +P +V+ + A Sbjct: 4 LTKIYEDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L + + + PS + S++++ E R++ + Sbjct: 64 RNLTEYLNDIEEN--------------ICEFFPSRELNFYNAKSLDDNAEDQRVNVLFKL 109 Query: 131 LERRDVVVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V + A+ K + +I+ + +L L+Y R D Sbjct: 110 LNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIES 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG ++DIFP S +R+ELFD+E++ + F+ T + + I + Sbjct: 170 KGQFAIRGGIVDIFPVHS-RFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSEL 228 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + I++ L R + E + E S +E Sbjct: 229 IIEDSKKESIINSIQKNLDKRV-------DHPIFGENVDNVKDKFEKLMEYI-RSDLEYE 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 +S + T+FDY D ++++++ + LVE G L Sbjct: 281 IDLVSCFLTKKDYDTVFDYFADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVLS 340 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 + + + + +T + + Sbjct: 341 KHEQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLKTLEAPN---------FN 391 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +D L+ I+ + + +V L + +G T+E + Sbjct: 392 KNIDSLVENIKSNSLRGFKQIVFAANVERKNMLKDLFLTNGIP---------TLEAEDYN 442 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 +++ VL+ L G ++ + + I + G + R + + Sbjct: 443 ANIKS--SQVLITQKNLPNGFEIKDPKYLIITYKEIFGREKQLRKRKKKK-----STGQD 495 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + Y D +Y I G+ K + I + Sbjct: 496 IVNYSDLNIDDY------VVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLMIPTD 549 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + NV + +++L G A+ + ++ D L +L Sbjct: 550 QMNLVQKYIGGGNVK--------KPSLNKLSGNDWAKAKQKAKKSVDEMADDLVEL 597 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 138/445 (31%), Gaps = 42/445 (9%) Query: 230 LTG-QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 + + + I + P + + I+ A + Sbjct: 629 DSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILA 688 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q E + Y +E SRF+S + + + ++ +H + + Sbjct: 689 QQHFNTIKERFRD--YPIRVEMMSRFVSPARQKQIMKDV----QRGLVDLLVGTHRILSK 742 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G R L + + + +SATP L+ Sbjct: 743 NLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVD--------VLTLSATPIPRTLQMGLT 794 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + D V L+ + I + ++ + + Sbjct: 795 GIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQMEFK 854 Query: 466 LEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+E + H ++ E ++ D + G +D+L+ ++ GLD+ V+ + I +A Sbjct: 855 LKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNA 914 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 DK G + L Q GR R+ + T K++ E +R K E G Sbjct: 915 DKMGLSQ----LYQLKGRIGRSDR---TSFAYF-TYEGQKSLTEISEKRLMAIKDFTEFG 966 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 G + D+ G +++ + D+ K L+Q + E +G Sbjct: 967 ---SGFKIAMRDLELRGAGNLLGESQ-------HGHIAKIGYDLYVKLLEQAVREAKGET 1016 Query: 644 MQHAQNLEFEEA----AQIRDQLHQ 664 + +N E D + + Sbjct: 1017 ISENKNTVIIEIKVNGYIPEDYISE 1041 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 262 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 100/648 (15%), Positives = 199/648 (30%), Gaps = 61/648 (9%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 I++L + + L GV GSG + A + A +V+ P++ A E++ + Sbjct: 2 IKQLLDTIAKRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFY 61 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P+ + Y P + K S + R++A +L RR+ ++V Sbjct: 62 LPKGK-----------RRVIYFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIV 110 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 V + + + ID+ ++ RL Y R + G + VRG Sbjct: 111 THVDTLLLKMIPRKRLADAADLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGG 170 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F S +R+ELF + VE L F P+T + + I I P V + + Sbjct: 171 ILDVFSP-SATFPVRIELFGDYVESLRFFSPITQRGIKDIQEIEIVPANEAVIDPAELPE 229 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 + +++ A + + ++ + E G G+E + Sbjct: 230 ILGRLRKAGADAGVDPV-------------VIRGHVDKIREEGRFPGMEGMLSIVY---- 272 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 + DY+P L +++ + R + + + Sbjct: 273 -PELDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTSALAENRLSVTPESLYIEW 331 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + L + E + T L + L Sbjct: 332 SQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTLKGEGKTEALFQPLADW 391 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + R + + ++ L L +G +L E+ + G + Sbjct: 392 FLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKG------FEEVENQ-KPGIYC 444 Query: 499 V-LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 + L G PE + + + + G R R+ G I Sbjct: 445 IPGYASGNLTRGFVFPEQGIALVTNQEIFGAKRR------------RSAGGTKRAKSQFI 492 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 TP K E + EHG+ + G I + P+ Sbjct: 493 TPEELK---------EGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDDRLYLPV 543 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + + ++ G Q ++ +E ++ +L +L Sbjct: 544 DRMEMVEKYIGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKL 591 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/432 (16%), Positives = 132/432 (30%), Gaps = 40/432 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ A + Q E Y Sbjct: 641 PMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVVPTTILAEQHVHTFRERF--GNYPI 698 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E+ SRF + + L L VV +H + + + + Sbjct: 699 TVESLSRFRTKGEQAKIVKD----LEQGKLDVVIGTHRLLQKDIAFKSLGLLVIDEEQRF 754 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + AL R + + ++ATP L S + D + T +D Sbjct: 755 GVKHKEALKKRRSSVD--------VLALTATPIPRTLHMSLTGMRDISIISTPPVDRQPI 806 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V ++ D + + I++ ++ + E L++ VR H ++ Sbjct: 807 VSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVPEVRIAVAHGRLN 866 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + E D+LV ++ GLD+P + + I AD G + + Q GR Sbjct: 867 EASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQ----IYQLRGR 922 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ Y P + + ++R EH G + D+ G Sbjct: 923 IGR---GEEQAYAYLFVPEEHRLTRDAQKRLAALM----EHRDLGSGFQIAMKDLQIRGA 975 Query: 602 NI-AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ--HAQNLEFEEAAQI 658 G V DM K L + + +L+G + + + I Sbjct: 976 GSALGGSQSG--------HVAAVGYDMFLKLLDEAVADLKGQPLTDPLEPEINVTLSTFI 1027 Query: 659 RDQ-LHQLRELF 669 D+ + + + Sbjct: 1028 SDEYVQSIEQRL 1039 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 115/658 (17%), Positives = 222/658 (33%), Gaps = 65/658 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + + E ++++E ++D + L G+T K + + + +++A N+ Sbjct: 2 NKLLENINSLEQVKQIENNIDD-YSPIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A + A PS D S++ R+ Sbjct: 61 RAEIYLDSINGIIENKA--------------YLFPSLDINFYNIKSIDNRKLSQRMEVLT 106 Query: 129 AMLERRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + + +V+ ++ A+ L D + K + + IID + L L Y N Sbjct: 107 KLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDVNNFIENLINLNYTANSLV 166 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +G F RG +ID +P D+ +R+ELFD+EV+ + LFD + + + I I P T Sbjct: 167 ENKGDFAKRGSIIDFWPVSYDN-PVRIELFDDEVDSIRLFDKDSQRTIEKISEAEISPVT 225 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ + ++ I E+ + E N+ + Q T F E M + S I+ Sbjct: 226 ELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYKQITAFIEESM----FVSNID 281 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L + + DY+P GL+ D+ I Y +E Sbjct: 282 -----LVNPYRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDLSLQMENNEV 336 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S R L + +E + I + L+KS +++ IE Sbjct: 337 FKSFEHARILIDDIYEQIDKFRIINLTS----ILKKSKLFNPRKIIEI-----KTIESEN 387 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +VD + + A +++VL+ ++ A L + YL D V ++ Sbjct: 388 FNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLID---------AYLEKDFTQVSKVG 438 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 I + + + G + ++ + G R R ++R Sbjct: 439 IGESFE--KIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARKKKSKNKTSSR--- 493 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 D I S Y I + K + I G + Sbjct: 494 -------DIINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKL--- 543 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + + + + K+ L Q A+ + +I D L +L Sbjct: 544 ------FVPVDQMNLISKYIGSRGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVEL 595 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/448 (14%), Positives = 135/448 (30%), Gaps = 46/448 (10%) Query: 233 QIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + I+ A + Q Sbjct: 631 RSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPTTILANQHY 690 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + ++ + +S PG + L A + ++ +H + + G Sbjct: 691 ETIKRRFDKFPVN------VQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDVGY 744 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + + + + + +SATP L+ S + D Sbjct: 745 KNLGLLIIDEEQRFG--------VKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRD 796 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + I + N +V E L +L E Sbjct: 797 LSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLIEL 856 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H I + + + + GE D+L+ ++ G+D+ V+ + I D+D G Sbjct: 857 VPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMG 916 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R Y T K + E +R K + + G Sbjct: 917 LGQ----LYQLKGRIGRGNR---SSYAYF-TYRTGKILSEISEKRLKSIRDFSDFG---S 965 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + + D+ K LQ+ + + G ++ Sbjct: 966 GYKIAMKDLELRGAGNLLGESQSG-------HVEAIGYDLYVKFLQEAVEKASGKEVEIK 1018 Query: 648 QNLE---------FEEAAQIRDQLHQLR 666 + + I DQ ++ Sbjct: 1019 DKSDVYIDIKVDGYIPNFYIEDQAQKIE 1046 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 110/669 (16%), Positives = 242/669 (36%), Gaps = 92/669 (13%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 DQ +++ ++G L G++G+ K+ +AN ++ +++ ++ A + Sbjct: 5 EFFDQNWQLQKWQQGFSKRERT-LLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANE 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 LY E+ E V F S D + A ++ RL A +L+ Sbjct: 64 LYDELSTLLGEEKVFQFF-------------SDDNIYAEFALASKDRIAYRLEALNFLLD 110 Query: 133 RR-DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R +V A+ P+ +L+ L LT G D ++ L++ Y + + Sbjct: 111 ERATGFLVVPFLALRSYLPAPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTP 170 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F +RG+++DI+P ++++ +R+E F +EV+ + FD + + ++++ R IYP + ++ Sbjct: 171 GEFSMRGDIVDIYPLDAEN-PVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFI 229 Query: 251 TPRERIVQAMEEIKE-------ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 + + + E + + N + + + + Y Sbjct: 230 LTDNEFDKGAKSLTEMTNLLGDQTSLSVSEQARNGSAMTDPSAKSYMEEVISAAQNHYYH 289 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG--DRARKETL 361 + ++ + + +L +Y P + + +D+ + D E Sbjct: 290 KDLRKFAEYFYDKK-----TSLLNYFPKNVQIFIDDFQKVNEMNNKLEMELADFILSEKA 344 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 +E GF + L + + P T + + G L Q Sbjct: 345 MERGFEGQTYLLDTM---AKVRNYKPATFFSNFQKGLGNLRFEQLYNFKQH--------- 392 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 ++ Q++ +E+ + V++ + E L + L E + Sbjct: 393 --SMQQFFGQLELFYTEVERFIKQEFTVVLAVSS----EKLRKSLHELDLS-------LQ 439 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 V+R I ++G+ +++ L G + + LV + + + G +R +++ I Sbjct: 440 EVDRESI----QVGKVNLI--DLQLSNGFNFLDEKLVVMTEQEIFGKMRKKKARKLNITN 493 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 A R + + GD + + KY + G+++ + I Sbjct: 494 AERLKDYNELAVGDFVV-----------HKNHGIGKYLGLQTLEVGGMHRDYLTIQ---- 538 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL-----EGLMMQHAQNLEFEEAA 656 G S P+ D + + + KI++L M ++ +E Sbjct: 539 -----YQNGDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVE----- 588 Query: 657 QIRDQLHQL 665 I D L +L Sbjct: 589 DISDDLIKL 597 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 73/448 (16%), Positives = 143/448 (31%), Gaps = 47/448 (10%) Query: 233 QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + ++ I P + + ++ A + Q Sbjct: 633 RSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQVAVLVPTTVLAEQHF 692 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 E + + +E SRF + L + ++ +H + + Sbjct: 693 NNFTERF--INFGVNVEVLSRF----QTKTQQTEILAKLKKGRVDLIIGTHRLLSKDVEF 746 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + L + ++ATP L S + D Sbjct: 747 FDLGLMIIDEEQRFGVKHKERLKEL--------KTQVDVLTLTATPIPRTLHMSMLGIRD 798 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + ++ + T + I + + +V E LEE Sbjct: 799 LSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYVYNRVDTIEQKVSQLEEL 858 Query: 470 GERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 R +H + V+ + G++DVLV ++ G+D+P + + I +AD G Sbjct: 859 IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTLFIENADMMG 918 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y + K + E +R + K E G Sbjct: 919 LSQ----LYQLRGRVGRSNR---VAYAYFM-YRPEKILSEVSEKRLEAIKGFTELG---S 967 Query: 588 GLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH-ELEGLMMQ 645 G + D+ G N+ ++ G D+V D+ + L++ IH +L + Sbjct: 968 GFKIAMRDLSIRGAGNLLGSEQSGF--------IDSVGFDLYSQLLEEAIHTKLGTSKQK 1019 Query: 646 HAQNLE-------FEEAAQIRDQLHQLR 666 N+E F A I D+ ++ Sbjct: 1020 RTSNVEISLELDAFIPAYYISDERQKIE 1047 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 104/658 (15%), Positives = 222/658 (33%), Gaps = 70/658 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 + + I++++ GL+D + + +T K + L + + N Sbjct: 2 NKLIEQLINVDQIKKIKYGLKD-YSPLYIQALTDGIKAHLALAIFELLGENVVFITDNPK 60 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 + + ++ + + P DT S+++ RL Sbjct: 61 RSEKFLQDINQISAKAK---------------LYPDLDTNFYNIKSIDDKKINQRLECLI 105 Query: 129 AMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ + + V + +AI L D + K + + IID + L+ L Y D Sbjct: 106 SLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDFINSLSALNYNSTDFV 165 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 +RG F RG +IDI+P +D +R+ELFD+EV+ + +FD T + + I I P Sbjct: 166 EERGDFAKRGSIIDIWPINYED-PVRIELFDDEVDSIRIFDKNTQRTIKKIKNVEIGPAN 224 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + ++ I ++ + ++ K L + + + +++ Y + + Sbjct: 225 ELLYDSDDYKKVIKAISNDIDKKEVTNTKDQK------LVDKYKQIISFLDQKMYVANKD 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 L E + DYLPA + + D+ + +E G Sbjct: 279 -----LINAYRTENYSSFIDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQMENGEV 333 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S + E ++ ++ ++I + S ++D IE Sbjct: 334 FGSFANYLLDSSEIYKNISEKSIINFTSILKRTKLFSPRKIIDL---------KTIEAEN 384 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 +++ + A +++V V +K E+L + +H + E Sbjct: 385 FNKDIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGF---------EE 435 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 D + +++ EG + +V L + G S+++ + + + Sbjct: 436 NSTDF--DKTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKKNNRKKVS------S 487 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 I Y D N GI + D+ I Sbjct: 488 KNIINYSDLEIGDYVVH-------------ENNGIGIYKGLTKIERNDVE--KDFILIEY 532 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V + + + K+ L L Q ++ + +I D L +L Sbjct: 533 RGNDKLYIPVDQMNLVSKYIGNRGEKPKLSALGSLQWQKSKQRAKKAVDEIADDLVKL 590 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/424 (13%), Positives = 125/424 (29%), Gaps = 37/424 (8%) Query: 233 QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I + P + + ++ A + Q Sbjct: 626 RSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILANQHY 685 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 +E + + LS + + + + +V +H + Sbjct: 686 HTMVERFKDFPITCAM------LSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVKF 739 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + +G + + + +SATP L+ S + D Sbjct: 740 NKLGLLIIDEEQRFGVKHKEKFKKFKASID--------VLTLSATPIPRTLQMSLSGIRD 791 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 + + + + I + N +V E L +++ Sbjct: 792 LSTLDDPPEERLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIEKLFLKIKDL 851 Query: 470 GERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 +H + + I+ D G+ D+L+ ++ G+D+ V+ + I D+D G Sbjct: 852 VPEASIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMG 911 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R G Y T K + E +R K + + G Sbjct: 912 LSQ----LYQLKGRIGR---GYRSSYAYF-TYRSGKILTEIGEKRLKSIRDFSDFG---S 960 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHA 647 G + D+ G +++ + V D+ K LQ+ + + G ++ Sbjct: 961 GYKIAMKDLELRGAGNLLGESQSG-------HVEAVGYDLYVKFLQEAVEKASGKEVKIK 1013 Query: 648 QNLE 651 + Sbjct: 1014 LENQ 1017 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 257 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 113/646 (17%), Positives = 217/646 (33%), Gaps = 70/646 (10%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYF 89 D TL G+ GS A + + P+ L + ++ F + Sbjct: 11 DKKKAITLSGLRGSSTALLAAQLAK--NSSCCCIVPDDHLIPIVVQNLQLFSEK------ 62 Query: 90 VSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL 148 PS + S ++ + RL++ ++V S+ A+ Sbjct: 63 --------TILSYPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRR 114 Query: 149 GDPDLYLKMMLHLTV-GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA-- 205 P L + L + G D+ ++ L L Y + G F VRG +IDI+P Sbjct: 115 VIPKELLSARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAF 174 Query: 206 -----ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAM 260 + + LR++ F + VE L FDP++ + + + P ++ +++ Sbjct: 175 ALENGQLHEGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSA-KKSL 233 Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE 320 +EI L R N +L TQ LE +N +GIE++ PG+ Sbjct: 234 QEIGTALQTRADKYSWNEEL---------TQTMLEKINTGQGIAGIESFLPLFF---PGK 281 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 +LFD+L D +V+ +S + Y+ + G L E Sbjct: 282 NLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRIEQNYLEVQGAG-TPALPPKEIFLSPE 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDDLLSEI 439 E + V + E + + + GLL I R + L+ I Sbjct: 341 EIKEKLSSFRQVRLSDIVSEQDNATSYN----TQSHGLLKQEIARRRAKEGILVPLIERI 396 Query: 440 RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV 499 RQ R+++ +++ ++L E LE H + + S + + + R + ++ Sbjct: 397 RQWQEEGHRIVICCRSEKHTKNLAEMLERHHFNISVVPSPLSLPDLQK-----RAEQREI 451 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ + L EG +PE I +++ G +R K Sbjct: 452 LLCDHPLSEGFSLPEQGWDIISESELFGQMRLGSK---------------------KSKS 490 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 E E + +HG+ + ++ P+ Sbjct: 491 KKWAEPIEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDDKLYVPVDR 550 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + V + +I +L ++ EE ++ +L ++ Sbjct: 551 LNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEI 596 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 101/302 (33%), Gaps = 31/302 (10%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQ 441 + ++ATP L+ S + D V + VA D ++ E I + Sbjct: 770 MRAEVDILTLTATPIPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISR 829 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDV 499 + + + +E+ R H +DT E I+ E DV Sbjct: 830 ELRRKGQTFFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDV 889 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV ++ GLD+P + + I AD G + Q GR R+ + + P Sbjct: 890 LVATTIIESGLDIPSANTMIINRADNLGLAE----MYQLRGRVGRSSTQ---SFAYLLVP 942 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 S+ ++ R + NE G G + D+ G ++ Sbjct: 943 SLDSISKDSRERLRALMECNELGG----GFKLAMNDLQIRGGGNLLGISQSGN------- 991 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQ-----NLEFE-----EAAQIRDQLHQLRELF 669 + D+ LQ+ + +L+ + + +L+ E A + + + + + Sbjct: 992 IAAIGYDLYLDLLQKTVADLKAQKLSQEEQGIYDDLDPEINLQHSAFIPSNYITDIDQRY 1051 Query: 670 IA 671 I Sbjct: 1052 IV 1053 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 230/665 (34%), Gaps = 66/665 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ-----RPTM 61 + + + I ++ D + Q + GV + K A V L+ + + Sbjct: 1 MMHSLTDFISRLPLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKIL 60 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 +L + A QL +++ + V + S ++ + A + + Sbjct: 61 LLTDTQFRADQLTSDLEALLEDENVF-------------EMQSEESLATETAVASRDADL 107 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R+ A +A+L + + +VV +S + P+ + + +L + Q + ++L E+ Sbjct: 108 SRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMG 167 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y + G F VRGE++DI+P D+ +R++ FD+E+E + FD + + ++ I + Sbjct: 168 YNKQTLVANPGEFSVRGEIVDIYPINFDE-PIRLDFFDDELESMRTFDADSQKSLNKIKQ 226 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 ++ P + ++ PR ++++++ L K E+++LT+ LE Sbjct: 227 ASVSPVSDFLLPRAEFSDGLKQLEQAFVDY----LNKLKGAEKKKLTEFFNPLLEAAKHF 282 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 Y + +S F ++F+YL ++ L+++D+ Q + + Sbjct: 283 SYGHELLPFSEFFLKH-------SIFEYLQSEDLILIDDFARINDQTNIQEKKNAEWITD 335 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 + LP ++ + + + + + + Sbjct: 336 RLREFKLLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQL 395 Query: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480 +++ Q+ L ++ + VL+ + L L + G Sbjct: 396 ITRQMQQYFGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMNFA------ 449 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 I D+ G + +G L G ++PE +V + + + ++ QT Sbjct: 450 -------ITDDILTGTAQLQIGS--LSHGFELPEEKIVVMTETELFAKVKKRVPRHQTFS 500 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 A K Y + T + R + E +G + + Sbjct: 501 NA-----EKITSYTELKTGDYVVHVNHGIG-RYEGLTTLEANGGKQDYITIAYAQKAKI- 553 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 P+ + V + + K++ L + + I D Sbjct: 554 -------------FVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAKVEDIAD 600 Query: 661 QLHQL 665 +L L Sbjct: 601 ELIAL 605 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 58/419 (13%), Positives = 127/419 (30%), Gaps = 36/419 (8%) Query: 233 QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + I P + + + A Q Sbjct: 641 RSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHY 700 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 Q +E + E LS + L A L +V +H + + Sbjct: 701 QTAIE-----RFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAF 755 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + +G + + + ++ATP L + D Sbjct: 756 DDLGLLIIDEEQRFGVKHKEKIKQL--------RANVDVLTLTATPIPRTLNMALVGARD 807 Query: 411 QVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 V T + I+ + + I + + + + E ++ Sbjct: 808 LSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQRI 867 Query: 470 GE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 V Y+H ++ + +++ D G +DVLV ++ G+D+P + + + ++++ G Sbjct: 868 VPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFG 927 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 + L Q GR R+ + Y P + E ++R + + E G Sbjct: 928 LSQ----LYQLRGRIGRSNR---LAYAYFTYPG-DRQPTEDAQKRLEAIRDFTELG---S 976 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 G + D+ G K + D+V ++ + LQ+ + + +G + Sbjct: 977 GFKLAMRDLSIRGAGDLLGKQQHGF-------IDSVGYELYQQMLQEAVSQKQGKDKKV 1028 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 121/674 (17%), Positives = 220/674 (32%), Gaps = 76/674 (11%) Query: 21 IRRLEEGLEDGLA-HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKE 79 ++ L L + G+ +T +A P + L A + + ++++ Sbjct: 19 VQDLIATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQ 78 Query: 80 FFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR----- 134 + + V F P+SD + S I RL + Sbjct: 79 WIGTDRVFLF-------------PASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVD 125 Query: 135 --DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 V+VA V A+ PD + L GM ++ RL + Y + G Sbjct: 126 VAPFVIVAPVKALMQPSLTPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPG 185 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 RG +ID+F DD+ LR+E F +E++ L FDPLT + + I I P + Sbjct: 186 EVNRRGGIIDVFSPG-DDLPLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPL 244 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 R + + R + L E + + R +R + G ++ Sbjct: 245 WRRDVALERMRAIDTSMLRHEALDEWLQAFDHIRNGERFE-------------GRALFAP 291 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 F R + P TL +LP +V+ E+ + + + R+ ++ G LP+A Sbjct: 292 FF--RDNPQAPGTLLHHLPPGAPVVLSEALLLAQHATELDQQAETRRRQQIDAGE-LPAA 348 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV------RPTGLLDPIIEV 425 L++ E ALA V+ + + + G P+ + Sbjct: 349 FPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLLSDPAPLPPSFSFGEQNGNPAPLTDT 408 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 R V D + L +R+ +D+ E L GERV + ++ Sbjct: 409 RNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDDVVERLRA-GERVVLITPQAARLQE 467 Query: 486 ---MEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 + RD G +V+ G+ +L EG MP ++L D + G+ + Sbjct: 468 LVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPALNLTLYSDTEIFGWRQRR------ 521 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 + + + EHGI + Sbjct: 522 ----------IIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIAVYEGLIRRSVGGI 571 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658 + A+G P+ + D V + ++ ++ L + A+ + Sbjct: 572 ERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGTQDWERAKR-------KA 624 Query: 659 RDQLHQLRELFIAA 672 R + L E I Sbjct: 625 RAAVQDLAEELITL 638 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 113/400 (28%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + + Q M Sbjct: 688 PMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSRRMAAFP--- 744 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + + L + ++ +H + + + + Sbjct: 745 ---VRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRF 801 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + + ++ATP L + + D + T D I Sbjct: 802 GVRHKERIKQL--------RTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPI 853 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + L+ E I + +V + + + L R H ++ Sbjct: 854 KTYVLPYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLE 913 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D G DVLV ++ GLD+P + + I DA G + L Q GR Sbjct: 914 EHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQ----LYQLRGR 969 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y S + E + R + + E G G + D+ G Sbjct: 970 VGRSTQR---AYAYLFYKSERPSTPE-AQERLRAIQEATELG---AGFRIAMRDLEIRGA 1022 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + V D+ + L+Q + L+ Sbjct: 1023 GNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRTLKQ 1055 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 255 bits (650), Expect = 6e-66, Method: Composition-based stats. Identities = 96/510 (18%), Positives = 187/510 (36%), Gaps = 56/510 (10%) Query: 16 DQPEAIRR-LEEGLEDGLAHQTLLGVTGSGKTFTIANV-IADLQRPTMVLAPNKTLAAQL 73 D ++ + L D + G++ K +A++ L P +V+ ++ AA+L Sbjct: 9 DTLTEYKKSVAHILSDEPVPLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKL 68 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ + A F P+SD + + ++ E R+ A L Sbjct: 69 TEDINTMCGDTAAYQF-------------PASDLTLADTEAQSQEYEYKRIETLSAALSG 115 Query: 134 RDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++++S A L D+ K + L G I + L Y R D +G Sbjct: 116 KARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCDMIEGKGQ 175 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F RG + DI+P SD +R+EL+ +E++ ++ FD T + + T+ +I P + Sbjct: 176 FSFRGSLADIYPVSSD-YPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPCGETIFE 234 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + ++ + E+ +K E K R + D+ + + + Y Sbjct: 235 EGVLSGTLQTLLEKTEKNKKKNDEAAK---------RIRRDIARLRDGISVCCLNRYFPL 285 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 + P ++FDY L+V ES G + L E G L L Sbjct: 286 -----CYKEPGSIFDY---ASTLIVSESFTAAEAAKGAISAHLEDLKLLTEDG-VLCKGL 336 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D + E++ + + + + G D+ D + + I++ + + Sbjct: 337 DRYLMSKAEYQDTVKNKVRLYM---DTFIRGGGIDLSDILKVDS------IQLSAWSGEY 387 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L E+ + ++ T + A+ L E L + G + Y + Sbjct: 388 KMLFEELDNYSRNGYSCVIFGGTDKAAKILAEDLHDKGYKADYAKNPKK----------F 437 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILD 522 LG V+ G +L G + PE + + Sbjct: 438 YLGRITVVEG--ILSAGFEYPEEKIAVLTR 465 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 120/434 (27%), Gaps = 38/434 (8%) Query: 222 ERLSLFDPLTG-QIVSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + S + + + I P + + ++ Sbjct: 611 DHFSYVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAI 670 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q Q L+ M G + LS + + L L +V Sbjct: 671 LVPTTVLAWQHYQTVLKRME------GFDIRVELLSRFRTAKEQKIILKKLEEGELDLVV 724 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + +G L + + +SATP Sbjct: 725 GTHRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVD--------VLTLSATPIP 776 Query: 399 YELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 L + + D V T D I V + I + N +V Sbjct: 777 RTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIE 836 Query: 458 MAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + H + E + + R L GE DVLV L+ G+D+P Sbjct: 837 SIYSCAADIHSMVPEANIGIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNC 896 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I +AD G + L Q GR R +A Y K + E +R Sbjct: 897 NTLIIENADCMGLAQ----LHQLRGRVGRTNR-RAYAYFTF---RRGKVLSEIATKRLDA 948 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + G G + D+ G +++ +V DM K L + Sbjct: 949 IREFTRFG---SGFRIAMKDLEIRGAGSVLGQSQSG-------HLASVGYDMYIKLLNEA 998 Query: 636 IHELEGLMMQHAQN 649 I E +G + Sbjct: 999 ILEQQGKAPEITPE 1012 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 115/660 (17%), Positives = 199/660 (30%), Gaps = 85/660 (12%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 D L +E + GV+G K I ++ A R +VLA ++ +L Sbjct: 7 LLDGVTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRL 66 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ V P+ D + E RL ML+ Sbjct: 67 CNDLSSMGTAALV---------------YPARDFNFRAAEGQSREYEHQRLQVMAGMLDG 111 Query: 134 RDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 VV++ + A PD L L G I L+ Y R Q G Sbjct: 112 DYQVVISCIDAALQYTIPPDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQ 171 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG-QIVSTIPRFTIYPKTHYVT 251 F VRG ++D F +RVE + +E++ L FDP T + + T+ P T + Sbjct: 172 FAVRGGILDFFTP-DASAPVRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLV 230 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 LA + + L + R +R + + + + + Sbjct: 231 SSPGS----------LAKKIERLSAGLRGKTAVRAKERLAQEADQLLAGKRPGSADKFLP 280 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L P TL DYL + L+ E ++ + +E G Sbjct: 281 LLY-----PSPATLLDYLEPEALVFQSEPIKIKERLRSTAWQWGEDLKDYLEEGILCKGL 335 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + L + T + +++ ++ Sbjct: 336 DAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPLSSLINL---------NARQLSVWGGG 386 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L ++ + R++V T+R A E L+ G Y R + Sbjct: 387 MQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIPCEY---------RDDAKTL 437 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI 551 G VL L G + P + I + R R N K I Sbjct: 438 FL-GRVTVL--PGSLSAGFEYPTANFALITHGHFAAAPKRARK---------RQKNAKEI 485 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 ++ P + H + QG+ K + + AKG Sbjct: 486 YSLSELAPG-----DYIVHSAHGVGVFEGIHKLEMQGVTKDYLKV---------RYAKGD 531 Query: 612 GKSRPIVEPDNVPMDMSPKALQQ-KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 P+ + D V + PK + +++ L G Q A+ A++R + + + I Sbjct: 532 ILYVPVTQLDMVSKYIGPKEEVKVRLNRLGGQDWQKAK-------ARVRSAVKDIAKELI 584 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 41/369 (11%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 LS + + L + ++ +H + + + +G Sbjct: 697 ILSRFRTPKQQAEILKQLKRGEIDMIIGTHRLVQKDVQFRDLGLVIIDEEQRFGVAQKER 756 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 + + + +SATP L + + D D V Sbjct: 757 FKSVTKNVD--------VLTLSATPIPRTLNMALSGIRDMSSLEEAPQDRHPVQTYVLEY 808 Query: 432 VDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEI 488 ++++ +R+ +V E + L+ + H + E E+ Sbjct: 809 DQAVINDAVRRELRRGGQVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKMPEGELSEV 868 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R + E +VLV ++ G+D+P V+ + I DAD G + + I + Sbjct: 869 WRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQ-----LHQIRGRVGRSSR 923 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 +A Y +T + K + E ++R + E G G + D+ G NI + Sbjct: 924 RAYAY---LTFTRNKVLSEISQKRLAAIREFTEFG---SGFKIAMRDLELRGAGNILGGE 977 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE-------EAAQIRD 660 G + V DM + L + + E +G + A + E E +A Sbjct: 978 QHG--------HMETVGYDMYLRLLGEAVSEEKG---EEASSYELECLVDVQVQAHIPEG 1026 Query: 661 QLHQLRELF 669 + L + Sbjct: 1027 YIESLSQRL 1035 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 104/644 (16%), Positives = 203/644 (31%), Gaps = 76/644 (11%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 +RL ++ G G++ + A + L R +VL ++ A ++ ++ Sbjct: 6 PEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLA 65 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 E + + + A V+ E RLS +A+ ++ Sbjct: 66 FLTGE--------------QVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLL 111 Query: 139 VASVS-AIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 V ++ A+ L + L VG D + L Y R +Q G F +RG Sbjct: 112 VCTIEGALERTIPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRG 171 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 ++D + ++D +RVE F +E + + LFD T + V I P + Sbjct: 172 GILDFYSP-AEDGPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLP-----Q 225 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 A L A ++ + + L + + D E + E ++ Y + Sbjct: 226 FAPGGYAGLLEAMDGLIARAKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYPH- 284 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 T DY P D +++ ES + + L+E G L L Sbjct: 285 ----MATAADYFPEDAVVLFSESPRVAERAKNYLWQLTEDAKALMEAG-VLAGELSEFAR 339 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII--EVRPVATQVDDL 435 FEE + + V V Q R L ++ ++ ++ Sbjct: 340 TFEELCGVLEEWPVVYL----------DNFVGAQYPRRPRTLLNLLCKQLPSYGASLETA 389 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY---LHSDIDTVERMEIIRDL 492 +S++ N +V +++ A +L L E G + LH + Sbjct: 390 VSDLSHYINENFSTVVLVSSEQRALNLQALLREQGVKAAVDFLLH------------KLP 437 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G+ ++ + L G++ PE + + G + + + K Sbjct: 438 APGKA--VIAVGGLSGGMEYPEARCAVLTEGQAAGVKKKKVKAV--------TNRQKLGS 487 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA---- 608 Y D + R + K + G+ K V I G ++ A Sbjct: 488 YADLSVGDLVVHEHHGIGRYQGMVKMPVD------GIQKDYVKIAYAGADVLYVPATQLD 541 Query: 609 --KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + + ++ + + A+ L Sbjct: 542 LVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGL 585 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 98/309 (31%), Gaps = 27/309 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRP 427 + + + + +SATP L + + D D ++ Sbjct: 748 EQRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSGIRDMSTLEEPPSDRQPVQTYV 807 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GERVRYLHSDIDTVE 484 + L +R+ +V + E V H + E Sbjct: 808 LEHDWGVLFDAMRRELERGGQVYYLHNRVETITRTAARIREMLGEDVTVGVAHGKMSQEE 867 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 +++ + GE DVLV ++ G+D+ + + I DADK G + + I Sbjct: 868 LNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDADKMGLAQ-----LHQIRGRVG 922 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NI 603 + +A Y +T K + E +R + E G G + D+ G N+ Sbjct: 923 RSSRRAYAY---LTFRRGKVLSEVASKRLGAIREFAEFG---SGFKIAMRDLEIRGAGNV 976 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LEFEEAAQIRD- 660 + G S V D+ K L++ + E G Q + AA I D Sbjct: 977 LGPEQSGFLMS--------VGYDLYLKLLEEAVLEERGEKAQIPAECSADLSVAASIPDR 1028 Query: 661 QLHQLRELF 669 + + Sbjct: 1029 YVPSPEQRM 1037 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 104/647 (16%), Positives = 213/647 (32%), Gaps = 70/647 (10%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S F ++ R+LE+ + ++G++ K + + P +VL ++ Sbjct: 2 SIFHEILNKLPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEA 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A +L + + + P+ D +V+ E +RL+ Sbjct: 62 NAKKLSDDYNQMAGGELSAVY-------------PAKDFTFRPIETVSREYEYIRLNVLS 108 Query: 129 AMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ R+ VV A + +A+ P L+ + G + ++ LA Y R Q Sbjct: 109 RIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + VRG ++D FP + +RVE + +E++ +S F+ + + + + I P T Sbjct: 169 DGSAQYSVRGGIVDFFPTSGSE-PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPAT 227 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + ++ ++ + + D++ ++ S I+ Sbjct: 228 EIIFSSPEQLR---------EGINGLIRSLGSSPQADAAKLKLSNDIKRIDGGLDLSNID 278 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y + P TLFDY + LL V E + + L+E G Sbjct: 279 KYIPL-----AYDRPATLFDYFES-PLLFVSEWSDLKESARAYEFQYQEDLKILLEEGE- 331 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 L LD+ F Q V + D+ + + + + Sbjct: 332 LCKGLDSFVKPFASVSEQIAQGKTVFFD----TFAHANHDLRLKELITVNAM----QTSS 383 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 + + L ++ A + V++ T T++ A+ L LE+ G + + T E Sbjct: 384 WSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATV---VPTGELT- 439 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G VL G +L G + P + I A + S+R + + G R+ Sbjct: 440 ------PGVVYVLAG--MLSSGFEYPAAKVALITHARIQNL--SKRKVKRRKGEEIRS-- 487 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 S + + QG++K + I G ++ Sbjct: 488 -----------LSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVLYVP 536 Query: 608 AKGRGKSRPIVEPDNVPM----DMSPKALQQKIHELEGLMMQHAQNL 650 + P ++ + ++ + + A L Sbjct: 537 VTQLDMVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADEL 583 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 60/369 (16%), Positives = 112/369 (30%), Gaps = 37/369 (10%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + + L + ++ +H + + A + +G Sbjct: 695 IELLSRFRTPKEQKQVLQKLRTGQVDIIIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHK 754 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPV 428 + +SATP L + + D V D I+ + Sbjct: 755 ERFKEMF--------RGVDVLTLSATPIPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVI 806 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERM 486 + I++ + +V + + + R H + E Sbjct: 807 EHDYGVIADAIKRELRRDGQVYYIHNRVESIQSCAAQISKLVPDARIGIAHGKMGENELS 866 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 I + L E D+LV ++ G+D+ + + I DAD G + L Q GR R+ Sbjct: 867 RIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLSQ----LYQLRGRVGRSK 922 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IAK 605 +A Y K + E +R + + G G + D+ G I Sbjct: 923 R-RASAYFTF---RRGKVLTEIASKRLSAIREFTKFG---SGFRIALRDLEIRGAGSILG 975 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----LMMQHAQNLEFEEAAQIRD 660 + G + V DM + L + E +G + + +L E A D Sbjct: 976 ERQHG--------HMEAVGYDMYLRLLSDAVSEKQGVKPPTKVEECLIDLPME-AHIPED 1026 Query: 661 QLHQLRELF 669 + L + Sbjct: 1027 YIENLAQRL 1035 >UniRef50_UPI00019032C1 transcription-repair coupling factor n=1 Tax=Rhizobium etli 8C-3 RepID=UPI00019032C1 Length = 411 Score = 252 bits (643), Expect = 3e-65, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 158/434 (36%), Gaps = 34/434 (7%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ LE+ + Q + G+ GS KT A + ++L PN A QL +++ Sbjct: 11 PQVKEWVSNLEEKMPRQLITGLAGSAKTLLFARAFKKTNKNMIILMPNLYYANQLAEDLQ 70 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 P++ + F P + + A + R++ A+ E++ + Sbjct: 71 HVIPQDQIHLF-------------PVDEVLSAEMAFSSPEARGERVATLNALQEKKAGIY 117 Query: 139 VASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRG 197 + V++++ +L+ L+ +G ID + R+L + Y R + + G F +RG Sbjct: 118 LLPVASLHKRLPNKKTWLQAQLNWHIGDEIDVENLPRQLTLMGYVREEMVAKPGEFSIRG 177 Query: 198 EVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV 257 +IDI+P + +RVELFD E++ + F+ T + + + P + V E + Sbjct: 178 SIIDIYPLTT-TYPVRVELFDVEIDSMRYFEAETQRSIEKTEEIWVSPTSEQVYGPEDLE 236 Query: 258 QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRG 317 +E++++ L R E L + YS L Sbjct: 237 HGIEQMQKMLEKRLAATTEEADREF---LQDYFGQLTSSWQAGVPTEEAKFYSDLLY--- 290 Query: 318 PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPL 377 + T+ DY P++ LLVVD+ + + R + + + + Sbjct: 291 --QESVTILDYFPSNSLLVVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQTFSADI 348 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS 437 + + T + G L ++ Q+ L + Sbjct: 349 QKIVQKEKFTTTFFSLFQKGMGNLRFQAIHNF-----------QYRTMQQFFGQMPLLKT 397 Query: 438 EIRQRAAINERVLV 451 E+ + + V++ Sbjct: 398 EMDRWRKQKQTVVI 411 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 102/671 (15%), Positives = 200/671 (29%), Gaps = 73/671 (10%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF ++ R ++ G + G+T S + A +P Sbjct: 1 MILPF--VRELFADVEKSPEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPL 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 +V+ P+ A +L P ++ + +P+ D ++ S + I+ Sbjct: 59 IVVVPSNRAAEEL-------LPIVQAYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQ 111 Query: 121 QMRLSATKAMLERRDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R +A ++ V+A V+ + Y + + G ID + L Sbjct: 112 EARAAALWKIVSGTARFVIAPFVATAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTS 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y+ D G + +RG ++DI+P ES+ +R+ELF +EVE + FD T + Sbjct: 172 GYSTVDVVEMPGEYALRGGILDIYPPESE-HPVRIELFGDEVESIRKFDTETQRSAGATD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + ++ +R D E + Sbjct: 231 EVVLLPLSDTPVREDILGSIHAKLS----------------------GRRLDADEETLEA 268 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + LFD LP + ++ D+ + + E Sbjct: 269 IARAEGVTVF-PGWEYYAGATANQRLFDLLP-NAAVLRDDPVKIESDFEAWWERVQQSHE 326 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 P L + P + Q I +L + Sbjct: 327 RSGVGHLVRPEDLLDSPDTW-------QQRIASLPGADVEQLGM-------YSESGEQIA 372 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 V ++ E++ RVL E L + E+ R Sbjct: 373 IQSQSTSKFHGSVPAMVEEVKALLTDGRRVLFAAANTGEVERLADIFSEYMVPFRV--GS 430 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLR----EGLDMPEVSLVAILDADKEGFLRSERSL 535 T E + + + L +++ EG+ MPE V D + Sbjct: 431 RSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESEVASAQ 490 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 R+ K + + + + EHGI K++ Sbjct: 491 QPKRSRS------KVSAF-----------LSDFRDLTINDYVVHVEHGIGQYQGLKEIAQ 533 Query: 596 ILALGQNIA-KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 A+G P+ D + S + ++ ++ L + + Sbjct: 534 GDGEPAEFMILEYAEGARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKA 593 Query: 655 AAQIRDQLHQL 665 + D+L +L Sbjct: 594 MKDMADELLKL 604 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 124/365 (33%), Gaps = 34/365 (9%) Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +S + + + + + ++ +H + + + +G R Sbjct: 715 MISRFRTAKQQKEIVERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKER 774 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 L + +SATP L S + D V T D + VA Sbjct: 775 LKQL--------RKEVDVLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKW 826 Query: 432 VDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEI 488 + L+ I Q ++ ++++ + E + + L H + + +I Sbjct: 827 DEKLIKSAIEQELDRGGQIYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDI 886 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + D+LV ++ GLD+P + + + AD+ G L Q GR R+ Sbjct: 887 MLKFMRHDADILVATTIIENGLDIPLCNTMIVNRADRHGLSE----LYQLRGRVGRSNRR 942 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTK 607 Y + P + + E RRR K + G G +D+ G N+ + Sbjct: 943 ---AYAYLLVP-PDRELTELARRRLAALKEFSDLG---AGFKIAALDLELRGAGNLLGGE 995 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQLHQ 664 G + + V ++ L++ + E++G + + + IR + + + Sbjct: 996 QSG--------QIEAVGFELYTTMLERTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKE 1047 Query: 665 LRELF 669 + Sbjct: 1048 ENQRL 1052 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 110/635 (17%), Positives = 220/635 (34%), Gaps = 81/635 (12%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I +A + +P +++ N+ A + + ++ ++ +E FV Sbjct: 24 KNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELFVLD 83 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD-P 151 + + A + R+ +L R VV+A+ + P Sbjct: 84 GN-------------LATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAP 130 Query: 152 DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 L+ K H VG I + + L + Y R + + G F +RG+++D++P + Sbjct: 131 ALFKKGQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPL-DRESP 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 LR+E F +E++ + FD + + + +P T+ + +V E + +A E+ +L Sbjct: 190 LRLEFFGDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKEA 249 Query: 272 KVLLE-NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 LE + L +L L+ + + +L DYLP Sbjct: 250 AASLEIAQEALANGQLPDDCNRYLDYLLSKSF---------------------SLLDYLP 288 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 A GLL+ ++ + + M + + S R +A + Sbjct: 289 AKGLLLFNDWQLIAESVKNMGAIN-DDYLASQIASKMMTSRQKLRLDFDAVLKADCHHRL 347 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 YVS + S G + +P + +Q++ L +E+ A + V+ Sbjct: 348 YVSL------MAHSMGRLRFGQHLAWDSREP----QQFFSQMELLKTELDSYAKKGQTVV 397 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + ++R AE+ ++ + +D L+ G +++G G Sbjct: 398 LQVSSRRQAEEFNRSCHDYDIYLPLAEAD-----------GLKEGRAQLVIG--GYASGF 444 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETER 570 +P+ LV + + + + + I+T+ A R Y + + Sbjct: 445 VLPDSDLVYLTEKELFNQNKRSKKRIKTLENAQRLR-----SYTELKPGDYVVHVNHGIG 499 Query: 571 RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK 630 R E Q + I T KG P + V ++ + Sbjct: 500 RFEGIQTLETD---------------GKKRDYITITYQKGDQLFVPDDQLSLVQKYVASE 544 Query: 631 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 Q I++L G + I D L +L Sbjct: 545 GKQPHINKLGGSEWAKTKKRVAARVEDIADDLIEL 579 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 129/430 (30%), Gaps = 40/430 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q + Sbjct: 629 PMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTILAQQHYQTIKDR------FK 682 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G S + L + +V +H + + + + + Sbjct: 683 GFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLKDLGLLIIDEEQRF 742 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + ++ATP L S + D V T + Sbjct: 743 GVAHKEKLKQLKTNID--------VLTLTATPIPRTLHMSMIGIRDLSVMETPPQNRYPI 794 Query: 425 VRPVATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V Q+ + E ++ +V E+ LE+ R Y H + Sbjct: 795 QTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEARIAYAHGQMS 854 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +I+ EFD+LV ++ G+DMP V+ + I DAD G + L Q GR Sbjct: 855 ENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQ----LYQLRGR 910 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + K + E +R + E G G + D+ G Sbjct: 911 IGRSAR---LAYAYFL-YQPNKVLTEVGEKRLDAIRDFTELG---AGFKIAMRDLSIRGA 963 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 N+ + G D+V D+ + L I E +G N E + EA Sbjct: 964 GNMLGAQQHGF--------IDSVGYDLYSQMLADAIKERQGKKPVKKSNAEVDLGLEAYI 1015 Query: 658 IRDQLHQLRE 667 D + + Sbjct: 1016 PEDYIADQEQ 1025 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 251 bits (640), Expect = 9e-65, Method: Composition-based stats. Identities = 108/688 (15%), Positives = 210/688 (30%), Gaps = 114/688 (16%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 P I++L + L+ + L +T ++ + P +++ A + E Sbjct: 3 DPITIQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARE 62 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM------ 130 + F + V P+ +T + S + RL+ + Sbjct: 63 LLFFGAQRGVHILP-----------FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKS 111 Query: 131 --------LERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 L VV+ + +AI L + + +VG ++ L Y Sbjct: 112 GPISIGNELGDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGY 171 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 Q + G + RG +ID+FP D+ +RVELF +EVE + LFDP + + IP Sbjct: 172 NPVSQVSEPGEYAARGGLIDLFPPGRDE-PVRVELFGDEVESIRLFDPSNQRSLDPIPAV 230 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 + P + + I +E L + +++ Sbjct: 231 EVLPVREVILNADTISCFRTAYREVFGGYAAEDL-----------------IYKEISQNR 273 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKE 359 G+E Y TLFDYLP L ++ D + + + R Sbjct: 274 TYQGMEQYLPLFY-----PDLDTLFDYLPKQTLFLMEPDVPNQIEERAREIEDQHRIAY- 327 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP---GNYELEKSGGDVVDQVVRPT 416 + G D ++ L ++ +G +D + P Sbjct: 328 ---QAGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKPALDLDLHPI 384 Query: 417 GLLDPIIEVRPVATQ---------VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 + ++ + Q +D L +I R+ + T E + E L Sbjct: 385 PPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRTIGQRERMRELLT 444 Query: 468 EHGERVRYLHSD----IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 +H +V + + + + + L + +G + P +V I + Sbjct: 445 DH--KVSVVDGSSWSALLQADPRQPMLLLGD-----------VSDGFEHPTRHVVLISED 491 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + G R + + I E + +HG Sbjct: 492 NVFGVRIRRRQ---------------------ISRRYLDQLIASFADLNEGDAVVHVDHG 530 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 + G + + A G P+ D V S + +Q + +L G Sbjct: 531 VGRFGGLVSLEVGQLKNDFLLIIYADGDKLYVPVENLDRVGKHSSGEEVQ--LDKLGGKR 588 Query: 644 MQHAQNLEFEEAAQIRDQLHQLRELFIA 671 + A+ R ++ ++ E +A Sbjct: 589 WAKTR-------AKARKKILEMAEELVA 609 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 23/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAIN 446 + ++ATP L + V D + + D + I + I + Sbjct: 789 DILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELYRG 848 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V + E + + E R H + + +++ + F++LV Sbjct: 849 GQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVCTT 908 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + I ADK G + L Q GR R+ + Y + P + + Sbjct: 909 IVENGVDIPTANTIIIDRADKFGLAQ----LHQLRGRVGRSKHR---AYAYMLVPHLRRL 961 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNV 623 E+R E E G G D+ G NI + G + V Sbjct: 962 TKHAEKRLEAL----ESLGELGAGFMLATHDLEIRGAGNILGDEQSG--------QIKEV 1009 Query: 624 PMDMSPKALQQKIHELE 640 ++ + L++ + L+ Sbjct: 1010 GFELYNQMLREAVVALQ 1026 Score = 44.4 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 60/149 (40%), Gaps = 6/149 (4%) Query: 391 YVSATPGNYELEKSGG-DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 + S P ++++ + V + + +D ++ + + L + A ++V Sbjct: 632 FASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVCGDVGFGKTEVALRATFRAAMDGKQV 691 Query: 450 LVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN- 504 + T ++ E+ + L + +V L E+ I + G DV+VG + Sbjct: 692 AILVPTTILAQQHYENFAKRLAGYPIKVDILSRFRTPKEQKATIEAVGHGTIDVIVGTHR 751 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSER 533 LL+ + ++ L+ + + + G ER Sbjct: 752 LLQTDVKFKDLGLLVVDEEQRFGVSHKER 780 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 102/631 (16%), Positives = 188/631 (29%), Gaps = 84/631 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + G+ ++ A + QRP ++L PN + E + F P+ Sbjct: 22 IYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPA------------P 69 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLK-MM 158 P + + RL+ + E R V + A +SA+ P +L Sbjct: 70 LVFPDREILPYDRLAPPADATATRLATLATLPEWRGVCL-APLSAVLQRLPPRSFLDQHA 128 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L VG + +RL + Y + + G RG +ID+FP+ S + R+ELFD Sbjct: 129 FVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGS-PLPYRIELFD 187 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 VE + FDP T + + + ++ P + + + + Sbjct: 188 RVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSG--------- 238 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + + G E+Y L + P DG++ + Sbjct: 239 --------DPQRAEIYRAASRGQAPQGAEHYLPLFFPEC-----SHLLMHFPVDGVVFL- 284 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + R E D L E+E + V Sbjct: 285 -PPGLEASARHIRQDWQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEG 343 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + D P L L + RV++ + Sbjct: 344 DAERLPTAPLPDLHGSPEAPLAS--------------LDTFLRHLPTTGRVILAAESPGR 389 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE---V 515 E L+E L + G +H + G + + + L GL + E V Sbjct: 390 QEALSERLGKSGLLPSRVHD----------WPEFLAGTERIAITVAPLERGLLIKENGLV 439 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 L + +A G +R Q AR S+ + + + Sbjct: 440 RLALVSEAQIFG----DRVFAQRRSANARQ-------------RSIEGLVRDLGELQPGD 482 Query: 576 QKYNEEHGITP-QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 +EE+GI QG+ + + + A G P D + + A + Sbjct: 483 AVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARYVGNGATEP 542 Query: 635 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + L + + ++A +L + Sbjct: 543 VLSRLGSNHWEKVKAKARQKAVDAASELLDI 573 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 85/256 (33%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAIN 446 + ++ATP L S + D + T V D ++ ++ Sbjct: 752 DILTLTATPIPRTLNLSLAGLRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRG 811 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V R E + L R H + E ++ D FD+L+ Sbjct: 812 GQVYFLHNEVRDIERMAATLRRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTT 871 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D P + + I ADK G + L Q GR R+ Y TP + +A Sbjct: 872 IIESGIDNPHANTILINRADKFGLAQ----LHQLRGRVGRSHQR---AYAYLFTPDL-RA 923 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + + RRR + E+ G+ G D+ G + + D V Sbjct: 924 MSDDARRRLDAIQSLEDLGV---GFALASHDLEIRGAGELLGEEQSG-------HMDEVG 973 Query: 625 MDMSPKALQQKIHELE 640 + + L + + Sbjct: 974 FTLFMEWLDDAVEAIR 989 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 97/657 (14%), Positives = 210/657 (31%), Gaps = 57/657 (8%) Query: 1 MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 M PF + + + + L + + G+T + ++ I + + P Sbjct: 1 MILPF--VRDLLADLEHTASFEQAQRHLSLSRGRRRVSGLTSTARSLYIPLLARAAKVPV 58 Query: 61 MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120 ++L + A ++ ++ ++ + +P+ D ++ S + ++ Sbjct: 59 VLLVADNKAADAMHLALRAGCE-------LTGAIAAERVLKLPAHDVLPFENMSPHPEVQ 111 Query: 121 QMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 + R + + +V+A V +A L Y + L G ID +L LA + Sbjct: 112 EQRATTLWKIATGDAAIVIAPVEAAAMKLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASV 171 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y + D G + RG ++D++ E+D +R+E F +E+E + FDP + + S + Sbjct: 172 GYEQVDVVEMPGQYTRRGGILDVYSPEADR-PVRMEFFGDEIETMRKFDPESQRSQSPLD 230 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P T + + T + EM+ E Sbjct: 231 EARLLPLTETPVTERLLAAVHARL--------------------SGARFETNDEGEMVAE 270 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G+ + + G TL D P +L V+E + Q+ + R + Sbjct: 271 MVAAGGVSVFPGWEFFAGVAGANKTLLDLFPR-CVLFVEEPGMIKNQVERWWNKVEQRHD 329 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 P + RP E PG + DV++ + Sbjct: 330 RSSIGTLIRPEDIYLRPELLEAQRKSH---------PGLDIDQLGAVDVLEDDETLGEIA 380 Query: 420 DPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER----VRY 475 + + +I+ R+L+ + E L L E+ R Sbjct: 381 FSSRPTLRFHGSIPAFVEQIKNLMQQETRMLLAAPNQGEVERLATLLREYELPYRLGSRV 440 Query: 476 LHSDIDT--VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 +H+ +T E + DLR +++ + G+ +P+ +LV D Sbjct: 441 MHTGSETMYDEASHLGGDLRT---PIILR-APIATGVSLPDANLVVFGANDLNDEADVTA 496 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + A ++ L + I +E Q + + + Sbjct: 497 RPAARKSKTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEFAEEAK 556 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + ++ + P++ + + + ++ M A L Sbjct: 557 LYVPLTRLDLIQKYRSTESGPAPVLH------RLGTQQWAKTKARVKKAMQDMADEL 607 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 37/403 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q + + + + Sbjct: 659 TPMDRLLCGDVGYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQ--FP 716 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + + + A + ++ +H + + + + Sbjct: 717 IHIEMLSRFRTAKEQKLIVERV----EAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQR 772 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + +SATP L S + D V T D + Sbjct: 773 FGVRHKERLKQL--------RAQLDVLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMA 824 Query: 424 EVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 VA + L+ + ++ ++ ++E R H + Sbjct: 825 IQTIVAKFDEKLVRSAVEVELERGGQIYFVHNRVETIYEIAAKIQELVPHARITVGHGQM 884 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ E+DVLV +++ GLD+P + + I AD+ G L Q G Sbjct: 885 GEAELEKVMLAFMNHEYDVLVATSIIENGLDIPLANTILINRADRHGLSE----LYQLRG 940 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + P + + E RRR K + G G +D+ G Sbjct: 941 RVGRSNRR---AYAYLMIPPEQE-LTEIARRRLAALKEFSDLG---AGFKIAALDLELRG 993 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 N+ + G + V ++ L++ +++++G Sbjct: 994 AGNMLGGEQSG--------HIEAVGFELYTTMLEEAVNKMKGQ 1028 >UniRef50_C2AVJ1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AVJ1_TSUPA Length = 918 Score = 248 bits (632), Expect = 6e-64, Method: Composition-based stats. Identities = 118/658 (17%), Positives = 199/658 (30%), Gaps = 101/658 (15%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + + + F ++ + P +V+ A L E++E Sbjct: 10 DVVAFAGAAGRPDLTVTAVDGARPFLLSALAGQA--PVLVVTATGREADDLTSELRETLG 67 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 +AV F PS +T + S RL + + D Sbjct: 68 ADAVTQF-------------PSWETLPHERLSPGADTVGRRLQVLRRLAWPDDAQYGAPL 114 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VVA+V ++ P L + L G D ++ L EL Y R D +RG F V Sbjct: 115 RAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRVDMVGKRGEFAV 174 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPR 253 RG ++DIFP +D + +RVE + +E+ L F + + +YP + Sbjct: 175 RGGILDIFPTTTD-LPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHVYPCRELLLTA 233 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +A L E LE + + G+E L Sbjct: 234 DVRDRAAT------------------LKAEHESDAALAEMLEKLAQGIPVEGMEALIPAL 275 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR---GDRARKETLVEYGFRLPS 370 L D LP V+ + + + R T G P Sbjct: 276 VPGELQL----LTDVLPDGTHTVLLDPEKIRTRAADLARTGQEFLEASWTAAALGSSAPL 331 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNY--ELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 L + L VSA + + G D + R Sbjct: 332 DPSGIDLGASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTV-HAEHAPAPRGS 390 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + L + +R AA ++ + + E L + L E Sbjct: 391 EAEAEKLFATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASEL----------EA 440 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 R G VL G L+ GL +P LV + + D G R A +G Sbjct: 441 GEGPRPGTVGVLRGS--LQTGLTVPSQQLVLLAEPDLTG------------NRVAGVGDG 486 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + + P+ + + ++EHGI K V+++ A+ + Sbjct: 487 RRL-------PAKRRNQVDPLALTAGDLVVHDEHGIG------KFVEMIERTVAGARREY 533 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 + + + ++L Q + G M A QIRD + + R Sbjct: 534 LVIEYAPSKRGQPGDKLFVPMESLDQLSRYVGGEM-----------AKQIRDMVPEAR 580 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 22/183 (12%) Query: 461 DLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 ++ + + + R + H + ++ EFDVLV ++ GLD+ + + Sbjct: 567 EMAKQIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIVETGLDISNANTL 626 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + A+ G + L Q GR R+ Y + PS K + ET R Sbjct: 627 IVERAENLGLSQ----LHQLRGRVGRSRERG---YAYFLYPSE-KPLTETAYDRLSTIAQ 678 Query: 579 NEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIH 637 N E G G+ + D+ G N+ + G V D+ + + + + Sbjct: 679 NNELG---AGMAVAMKDLEIRGAGNVLGAEQSG--------HVAGVGFDLYVRLVGEAVE 727 Query: 638 ELE 640 Sbjct: 728 AFR 730 >UniRef50_C5G3U7 Transcriptional repair coupling factor n=1 Tax=Lactobacillus jensenii 1153 RepID=C5G3U7_9LACO Length = 623 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 96/620 (15%), Positives = 205/620 (33%), Gaps = 68/620 (10%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 +++ N+ A +L + PE V+YF T + A+ Sbjct: 45 KQNNVLIIIEENENKAQRLVDNLAPILPEEKVQYFAVDS-------------TLATQRAT 91 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAI-YGLGDPDLYLKMMLHLTVGMIIDQRAIL 173 + R+ A +L +VV + + Y L D Y++ + VG D + + Sbjct: 92 ASPDELAQRIKALHLLLSGDSGIVVTTAQGLEYQLNPKDSYIRGNKLIKVGQEYDLKELN 151 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 + L Y + + G F VRG+++DI+P +R+E F +EV+ + FD T + Sbjct: 152 KWLVASGYRKEALVAKPGEFAVRGDILDIYPL-DQVSPIRIEFFGDEVDTIKSFDVNTQK 210 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + P + + + +A IK+E+ E Q Sbjct: 211 SILEKEEIVVLPACDRIFETDNLKKAYNLIKDEIK-------------ESPNSESAEQNF 257 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE+++EL + +NY+ + P +L YLP +GL+V ++ + Sbjct: 258 LEVLDELAQGNLPDNYAFLVDYLLPKSC--SLLSYLPENGLVVFNDWQAIKKADSEITDQ 315 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + ++ G L S L ++ + G +L Sbjct: 316 NADFISDEIKAGLMLNSQKLRMNLTTVLRQSKHHRLYLSLFQKGMGQLRFDSLFNW---- 371 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 P E +Q+ + SE+ + V++ +R ++ + L + + Sbjct: 372 -------PNREPEQFFSQMPLIKSELNKYKKQGYTVILQADNERRSKQIQSNLIDFDLNL 424 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + +L + + VG +G +P++ LV + + + ++ Sbjct: 425 PIV-----------TKENLVEHKLQITVG--QFSQGFSLPQIQLVYLTERELFNTQVHKK 471 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 I + A R + K ++ + G + Sbjct: 472 RKILNLENAQR-----------LRNYNDLKPGDYVVHVNHGIGRFEGIKTLDVDGQKRDY 520 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNL 650 + I G + A + V + + + ++ + A +L Sbjct: 521 ITITYQGHDQLFVPADQLSLVQKYVGSEGHRPKVNKLGGSQWAKTKRSVQSKVEDIADDL 580 Query: 651 EFEEAAQIRDQLHQLRELFI 670 AA+ ++ +++ I Sbjct: 581 IKLYAARESEKGFAFQKIMI 600 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 191/643 (29%), Gaps = 88/643 (13%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIAN--VIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPE 83 L G GS IA Q P + V+ N A +L E++ F P+ Sbjct: 73 ALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPD 132 Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASV 142 V +P +T S ++ + RL+ + E R D+++V + Sbjct: 133 ARVRV-------------LPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT 179 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 +A+Y + T G +D+ + +L Y Q + G + VRG +ID+ Sbjct: 180 TALYRMPPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL 239 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + R++LFD++V+ + FDP T + + + + P + Sbjct: 240 FPMGS-PLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSR 298 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E + + +GIE Y + Sbjct: 299 WRETFEG-----------------DPSRAPIYKDIGNGVPSAGIEYYLPLF-----FDET 336 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 TLF YLP + LV G R + + S RP+ + Sbjct: 337 ATLFHYLPENAQLVFT----------GDLDAAIKRFTADTKQRYAFLSHDRERPILEPQR 386 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQR 442 L+ Y+ A P V G P+ + L + Sbjct: 387 LFLSDDDFYLLAKPFARI--------VLPAQPSGGWAAPLPNLALDRHADAPLAAFAAYL 438 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 N RVL T + E + + EH R +E LG Sbjct: 439 ETTNNRVLFTVESAGRRETIAQLFAEHHLRPA---GSDSFAAWLETDERFALGVAP---- 491 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 L G +P + + + G L + + ++ Sbjct: 492 ---LASGFAVPGEGYAIVTETELYGALGRRAGRRRQ-----------------EQASNVD 531 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + + + + +HGI + + + A P+ + Sbjct: 532 AMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHV 591 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +H L + A+ A QIRD +L Sbjct: 592 ISRYSGADPDSAPLHALGSGQWERAKRRA---AQQIRDTAAEL 631 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 98/294 (33%), Gaps = 31/294 (10%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L + + D V T + V + + ++ E + + Sbjct: 813 DVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRELKRG 872 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V E+ LEE R + H + E ++RD +VL+ Sbjct: 873 GQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVLLCTT 932 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + ADK G + L Q GR R+ + Y + A Sbjct: 933 IIETGIDVPSANTIIMHRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVHDPQ-A 984 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPDNV 623 + + +RR + + EE G G + D+ G K G E + Sbjct: 985 LTKQAQRRLEAIQQMEELG---SGFYLAMHDLEIRGTGEVLGDKQSG--------EIHEI 1033 Query: 624 PMDMSPKALQQKIHELE-GLMMQHAQNLE-------FEEAAQIRDQLHQLRELF 669 + + L + L+ G L A D ++E Sbjct: 1034 GFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERL 1087 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 106/649 (16%), Positives = 222/649 (34%), Gaps = 72/649 (11%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 ++ G Q L+ + G ++ ++A +I + ++++ + A L E+ + V Sbjct: 11 SVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLANHDV 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P +T S ++ + RL + V+ ++ + Sbjct: 71 NL-----------CLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLM 119 Query: 147 GLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P YL ++ L G + + + L + Y +Q ++ G F +RG ++DIFP Sbjct: 120 VRLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPT 179 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 LR+ELFD+E+E + FD T + + + P + T I + + Sbjct: 180 GCQQ-PLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRR 238 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 K + ++++ +GIENY + +L Sbjct: 239 RFEVISKE----------------AESVYQLVSRNLMPAGIENYLPLF-----FDDTASL 277 Query: 326 FDYLPADGLLVV--DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 FDYLP + L+ D + ++ R+ + + F F+ Sbjct: 278 FDYLPENTQLITLGDIDKACANHLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFK 337 Query: 384 ALAPQTIYVSATPGNYELEK--SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ TPG+ +L + + DV + + P+ ++ ++ L ++ Sbjct: 338 PYKRSQFFIH-TPGDAQLGEDGTKKDVAKKDSALQANVAPLPDINA-NHKLKQPLESLQA 395 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDV-- 499 A + +L + ++ E L L + G + E + + V Sbjct: 396 FAQDGKPLLFSAESEGRREALLALLSKIGIKPTLF------KHLDEFLDASVPLKGPVHG 449 Query: 500 LVGINLLREG---LDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 L+ ++ L G LD P+ L I + + G I + R K + Sbjct: 450 LI-VSPLSRGCTLLDSPKGELSLICETELFG---------HKIAQQRRRDKQKQVS---- 495 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 I + + Q + EHG+ + + + + + A G P Sbjct: 496 ----SDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVP 551 Query: 617 IVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + + + ++++L A+ E+ IRD +L Sbjct: 552 VSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEK---IRDVAAEL 597 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 21/275 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 760 EHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFV 819 Query: 429 AT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 + + + +V E + L + R + H + + Sbjct: 820 REYHQATIREALLREILRGGQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDL 879 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 +++ D F+VLV ++ G+D+P + + I ADK G + L Q GR R+ Sbjct: 880 EKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVIDRADKFGLAQ----LHQLRGRVGRS 935 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y ITP + K I R+R + EE G G D+ G Sbjct: 936 HHQ---AYAYMITPPI-KLISTDARKRLEAIDALEELG---AGFMLATQDLEIRGAGELL 988 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + L+ + L+ Sbjct: 989 GDEQSG-------HISKIGFSLYMEMLESAVSALK 1016 Score = 47.9 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 82/250 (32%), Gaps = 27/250 (10%) Query: 418 LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERV 473 +D ++ + + + ++V+V T ++ E+ + + + Sbjct: 650 SMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEI 709 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL---REGLDMPEVSLVAILDADKEGFLR 530 + E+ ++++ L G+ D+++G + L ++ L+ I + + G + Sbjct: 710 EVMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFV--DLGLLIIDEEHRFGVRQ 767 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 E+ +A R L I ++ A+ R + + Sbjct: 768 KEKI------KALRANVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPAKRLAVKTFV 819 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQ 645 ++ + RG + + ++ + L+ + E G M + Sbjct: 820 REYHQATIREA---LLREILRGGQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRE 876 Query: 646 HAQNLEFEEA 655 ++LE A Sbjct: 877 --RDLEKVMA 884 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 101/643 (15%), Positives = 211/643 (32%), Gaps = 49/643 (7%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 ++ + L G +T G+ G+ + +A + L+ P + +A ++ A L ++ F Sbjct: 31 FAQVVDELRAGQRVRT-QGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFF 89 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 +P+ + + S + RL A + + R +V Sbjct: 90 LGGQGSLLAPR-------VLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALV 142 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 SV A++ P + + + VG D+ ++ RRL + Y + GTF VRG+ Sbjct: 143 LSVRALHRKVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGD 202 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++D+F D +R+E F + +E + FDP + + V + + P + E + Sbjct: 203 LLDVFSPLYDK-PVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPR 261 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A + ++ + L+ + E G+E G Sbjct: 262 AESAARAVADRINLPTIK-------------LREQLDALREGLPGFGMEGLLPGFFEDGL 308 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 L D+ P ++ +D+ + + + R E L L Sbjct: 309 STVFDFLRDWSPEAPVIYLDDP-LGQDRAADTLWEELERSHGAAEARQELICPPLEHFLS 367 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-DPIIEVRPVATQVDDLLS 437 E+ + G L ++ V T L + I+ + L+ Sbjct: 368 REDVNQRMQS--FRVLEGGGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGALSPLVE 425 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + +V T A+ L L + V+ T + + L Sbjct: 426 RLERWRELRVACVVACGTLSQADRLKRLLMDRNVMVKV-----HTEPLEDAV-ALYEPSI 479 Query: 498 DVLVGINLLREGL-DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 + + G D P L + D + G + + + ++ ++ +GD Sbjct: 480 RAHLFTGEVSHGFVDGPG-GLAVLADEEIFG------ARARRRPKRSKKLDAFGSGFGDL 532 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV--VDILALGQNIAKTKAKGRGKS 614 + R E +G+ L + D + L + K G Sbjct: 533 KEGDLIVHTDFGIG-RYAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGD 591 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 V+ D + + ++ ++ +++ A L AA+ Sbjct: 592 PTQVQLD----KLGTTSWEKTKKRVKEQLLKMAAELLQIAAAR 630 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 49/294 (16%), Positives = 102/294 (34%), Gaps = 24/294 (8%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQ 441 + ++ATP L S V D + T D V D ++ E I + Sbjct: 800 WRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIER 859 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDV 499 A +V + L +V H + + +++ ++ V Sbjct: 860 EVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQV 919 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 L+ +++ G+D+ + + + AD+ G + L Q GR R+ Y + P Sbjct: 920 LLCTSIIESGIDISSANTMIVNRADQFGLAQ----LYQLRGRVGRSKER---AYAYLLVP 972 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 S +A+ + +RR + + E G G + D+ G + Sbjct: 973 SR-RAVTKDAQRRLEVLQNFTELG---AGFSIASHDLEIRGAGNLLGDKQSG-------A 1021 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQH--AQNLEFEEAAQIR-DQLHQLRELFI 670 + DM + L++ + E++G + ++ A I D + + + + Sbjct: 1022 IAEIGFDMYAQLLEEAVAEMQGQPPKVQIEPDVTLPMPALIPDDYVSDVHQRLV 1075 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 18/235 (7%) Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 R + G+P D L Q+ M + Sbjct: 580 RMRLIQKFSGGDPTQVQLDKL--GTTSWEKTKKRVKEQLLKMAAELLQIAAARKAHPGHA 637 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 SA D +FE + + + D + +D ++ Sbjct: 638 FSAPDRYFAQFEAD---------FEFEETPDQAKAIEDVLADM--QKPEPMDRLVCGDVG 686 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAED----LTEYLEEHGERVRYLHSDIDTVE 484 + + + + A ++V V T +A+ + ++ V + E Sbjct: 687 YGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPE 746 Query: 485 RMEIIRDLRLGEFDVLVGINLLREG-LDMPEVSLVAILDADKEGFLRSERSLIQT 538 EI++ + G+ D+L+G + L G + E+ L+ + + + G + E Sbjct: 747 VREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKESLKKWR 801 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 89/663 (13%), Positives = 212/663 (31%), Gaps = 66/663 (9%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + + + L+D + + G T + L + +++A N+ A Sbjct: 4 LVDIINNLRPFEEISDALKDSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 + Y ++ P P D F+ S + + RL + Sbjct: 64 RKYYEDLFNISP--------------LRVLLYPEKDIFLYDRDSKSRDNLKTRLGTISKI 109 Query: 131 LERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 L ++V ++ A+ D++LK L L ID +++ +L ++ Y R Q Sbjct: 110 LTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLNAKLLQMGYERYPQVEG 169 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG +IDI + R+ELFD E++ + F+ + + + I I+P Sbjct: 170 MGQFSIRGNIIDIATFSDN---YRIELFDTEIDSIRTFELESQRSIDFIDSVKIFPTLDI 226 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + A ++I+ E+ + RL ++ + E Y + Sbjct: 227 LISEDDRLNAAKKIENEI------NKTKLSGERKDRLFEKFSLYKNRLVEDEYIQNPDLI 280 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 FL+ + D++ D + +++E + + + + ++ +G LP Sbjct: 281 IPFLNEDKL----SGIIDFIGEDTISILNEPKQILEREETLELENSETITEMITFGEALP 336 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 S + + L + + E +V+ ++ + Sbjct: 337 SHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKS---------ITNYR 387 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +++ ++ + +V++ + + A+ L +L E V + + + Sbjct: 388 SKIKLFREDLDYYLSNGYKVILLGGSLKRAKRLHNFLLEFNLNVEF---------KEDRN 438 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 + + +V + G + +V I A+ G + ++ Sbjct: 439 TEFAN---NFVVTTGSVNAGCEFALSKIVIINYAEIYGTYKEKKK--------------P 481 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 + KY + G+ + V I G + + Sbjct: 482 KRKKEKILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIE 541 Query: 610 GRG---KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 K + ++ + + + + A +L AA+ + Sbjct: 542 SLDLIYKYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFS 601 Query: 667 ELF 669 + Sbjct: 602 KDS 604 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 141/434 (32%), Gaps = 44/434 (10%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 +P + + ++ A + Q +E + Sbjct: 637 HPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTILAQQHYNIMVERFKDFPVE 696 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G LS + + L A + +V +H + + + Sbjct: 697 VG------ILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKDVVFKDLGLLIIDEEQR 750 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + T+ +SATP L+ S + D V + Sbjct: 751 FGVRHKEKLKMLKENID--------TLTLSATPIPRTLQMSMIGIRDMSVIEEPPEERFP 802 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 V ++ E I + +V E + L E V ++ + + Sbjct: 803 VKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEVSFVMANGQM 862 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + + + G+ DVL+ ++ G+D+ + + I D+++ G + L Q G Sbjct: 863 NEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQ----LYQLRG 918 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y T +I E ++R K K E G G + D+ G Sbjct: 919 RIGRSSR---VAYAYF-TYEKDVSISEIAQKRLKTIKEFTEFG---SGFKIALRDLEIRG 971 Query: 601 QN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLE---F 652 I +K G DN+ D+ K L Q +++L+G ++ +L+ + Sbjct: 972 SGSILGSKQHG--------HIDNIGYDLYMKYLTQAVNKLKGIETRETIETVIDLKIDSY 1023 Query: 653 EEAAQIRDQLHQLR 666 I D+ +L Sbjct: 1024 IPKTYIEDERLRLE 1037 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 202/645 (31%), Gaps = 71/645 (11%) Query: 30 DGLAHQTLLGVTGSGKTFTIANVIADLQRP---TMVLAPNKTLAAQLYGEMKEFFPENAV 86 T G+ GS IA + ++ A +L E+ F P+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS-AI 145 +P + S ++ + RL+ +L +V+ V+ A+ Sbjct: 75 RL-------------LPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTAL 121 Query: 146 YGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 LG P+ G +++ A+ +L + Y + G + +RG + D+FP Sbjct: 122 QRLGPPNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPM 181 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S ++ R++LF +E+E++ F+P T + + + + P + +E Sbjct: 182 GS-NLPYRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWRE 240 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 + +GIE+Y E +L Sbjct: 241 VFEGDPSRCSIYKDA-----------------SLGIPSAGIESYLPLF-----FEENSSL 278 Query: 326 FDYLPA-DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 FDYLP + + I G ++ +R E L R L +EF + Sbjct: 279 FDYLPRSGDPVWLVSIGDVEETIKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFFS 338 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA 444 Y + N +EK+ V + DPI +R V A+ Sbjct: 339 T--SKPYARLSLENEAVEKNEFFAVPDISVHRRDADPISRLRNVV-------------AS 383 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD---IDTVERMEIIRDLRLGEFDVLV 501 N RVL+ + + E + + +E V + E + I + E + Sbjct: 384 ENVRVLICSDSAGRKESIRQLFDESN-SVASVDGKSLYSLKPEGFDSIAEFIKSESLFGL 442 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 L G P +L+ I +A+ +R G+A N + +L+ D + Sbjct: 443 VTAPLFNGFSWPSENLIVITEAELFTTTTRQR----RKGKANENAD-SDMLFKDLSELKI 497 Query: 562 AKAIGETER--RREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 + E R + + ++ + + GQ + Sbjct: 498 GDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLYVPVQQLQMVTRYAG 557 Query: 620 PDNVP---MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ-IRD 660 D + + + + A L AA+ IR Sbjct: 558 SDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARAIRK 602 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 93/257 (36%), Gaps = 23/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAIN 446 + ++ATP L + + + + T + V + DD++ E + + Sbjct: 773 DILTLTATPIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRG 832 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V ++ L+E R H + E ++R+ ++L+ Sbjct: 833 GQVYFLHNEVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTT 892 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + ADK G + L Q GR R+ + Y + P+ ++A Sbjct: 893 IIETGIDVPTANTIIMHRADKFGLAQ----LHQLRGRVGRSHHR---AYAYLLVPN-SEA 944 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI-AKTKAKGRGKSRPIVEPDNV 623 + + + R + EE G G + D+ G K G E + Sbjct: 945 LSKQAQLRLNAIQAMEELG---SGFYLAMHDLEIRGAGEVLGDKQSG--------EIHEI 993 Query: 624 PMDMSPKALQQKIHELE 640 + + L + + L Sbjct: 994 GFQLYTEMLNRAVKSLR 1010 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 106/660 (16%), Positives = 198/660 (30%), Gaps = 91/660 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 V+ + + IA + P +++ + A Q+ +++ + P Sbjct: 25 VSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDLQTLL----------AHCSGLPV 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 P +T S + +I RL+ + +VV V + P Y + Sbjct: 75 IGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGS 134 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 VG + A +RL Y Q G F VRG ++D++P +D + LR+EL D Sbjct: 135 FDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTD-VPLRIELLD 193 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 EE++ + FDP + + ++ + + P + + + ++E Sbjct: 194 EEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERFD---------- 243 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG--RGPGEPPPTLFDYLPADGLLV 336 L R + + SGIE Y RG TLFDYL AD L++ Sbjct: 244 -------LDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVL 296 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + R E R + + + Sbjct: 297 --TAPGVSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEV-W 353 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 +V+D+ P D + L + + A RVL+ + Sbjct: 354 SAEHAHIDKAEVLDEQPLPVATKDVSVGQ--------ALRTFLADYA---GRVLIAATSP 402 Query: 457 RMAEDLTEYLEEHGERVRYLH------------SDIDTVERMEII-----RDLRLGEFDV 499 E L E L + L SD+ R D F V Sbjct: 403 GRREVLLELLATADLQPEVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHV 462 Query: 500 L-----------VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 + + + L +G + + + + + + +GR Sbjct: 463 IASQGGSLPTFAITVAPLEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGR------- 515 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 I + E +E+HG+ + G+ + A Sbjct: 516 -----------EPEAIIRDLGELSEGAPIVHEDHGVGRYRKLITMNVSGMPGEFVEIEYA 564 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 KG P+ + + +H L G A+ E+ + +L +++ Sbjct: 565 KGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQAR 624 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 92/276 (33%), Gaps = 21/276 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T L+ + + Sbjct: 781 EQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFI 840 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVER 485 + LL E ++ A ++ + L + R H + E Sbjct: 841 TPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPEREL 900 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D + F+VL+ ++ G+D+P + + I AD+ G + L Q GR R+ Sbjct: 901 ERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQ----LHQLRGRVGRS 956 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + P + E+R E +E G D+ G Sbjct: 957 HHR---AYAYLVVPDRRSMTADAEKRLEAIASMDE----LGAGFTLATHDLEIRGAGELL 1009 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + V + + L++ + ++ Sbjct: 1010 GEDQSG-------QMAEVGFSLYTELLERAVRSIKQ 1038 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 106/634 (16%), Positives = 209/634 (32%), Gaps = 82/634 (12%) Query: 34 HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYY 93 H+ L V I+ + Q T+V+ P+ A +L + E ++ Sbjct: 17 HKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQD--------- 67 Query: 94 DYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPD 152 P +T S ++ I RLSA + + + + +S + P Sbjct: 68 -----VCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQ 122 Query: 153 LYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIAL 212 +L + G + + +L Y +Q + G + VRG ++D+FP S + Sbjct: 123 YLQHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSA-VPF 181 Query: 213 RVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 R++ FD+E++ + FD T + + I + P + T + I + +E Sbjct: 182 RLDFFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGE--- 238 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 + + + + +++ SGIE + TLFDYLP Sbjct: 239 -------------IRRDPEHIYQQISKGTLISGIEYWQPLF-----FAEMATLFDYLPEQ 280 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 L V E++ T Q Y+ + R E R + + L +E + Sbjct: 281 TLFVDMENNQT--QGERFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRI 338 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + V V + + + EV + Q + L + VL + Sbjct: 339 TFK---------AEKVRSSVRQKNLPVAALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFS 389 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T+ E L + L + + + + + + +F +LV L +G + Sbjct: 390 VETEGRRETLLDLLSPLKLKPKQI----------QSLEQIENEKFSLLVSS--LEQGFII 437 Query: 513 P-EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 + + I +A+ G IQ R R T + + Sbjct: 438 EQSLPVAIIGEANLLG------KRIQQRSRDKR------------KTINPDTLVRNLAEL 479 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + Q + +HG+ G + + + A P+ + + Sbjct: 480 KIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSD 539 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 +H+L ++ + A +IRD +L Sbjct: 540 ESAPLHKLGNEAWAKSRQ---KAAEKIRDVAAEL 570 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 28/288 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQR 442 + ++ATP L + + D + T + V D ++ E I + Sbjct: 748 RANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILRE 807 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V E+ E L R + H + E ++ D ++VL Sbjct: 808 ILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVL 867 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I AD G + L Q GR R+ + Y +TP Sbjct: 868 VCSTIIETGIDVPTANTIIIERADHFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPP 920 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + ERR E G D+ G + + Sbjct: 921 PKMMTKDAERR----LDALENLDNLGAGFILATHDLEIRGAGELLGNEQSG-------QI 969 Query: 621 DNVPMDMSPKALQQKIHELE-------GLMMQHAQNLEFEEAAQIRDQ 661 +++ + + L + L+ + Q ++E A + D Sbjct: 970 ESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDD 1017 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 25/271 (9%) Query: 392 VSATPG---NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 SAT Y+ E + V+ + +P +D ++ + + + +++ Sbjct: 595 FSATFPFEETYDQEMAINAVISDMCQP-KAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQ 653 Query: 449 VLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 V V T ++ E+ + V L E+ +I+ +L G+ D+L+G + Sbjct: 654 VAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTH 713 Query: 505 -LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 L++ + ++ L+ I + + G + + Q R L I ++ Sbjct: 714 KLIQSDVKFNDLGLLIIDEEHRFGVGQK-EKIKQL-----RANIDILTLTATPIPRTLNM 767 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 A+ R ++ + ++ D++ + + RG + D Sbjct: 768 AMNGI--RDLSIISTPPARRLSIKTFVRQNDDLVVREAIL---REILRGGQVYYLHNDVA 822 Query: 624 PMDMSPKALQQKIHELE-----GLMMQHAQN 649 ++ + + L + E G M + Sbjct: 823 SIENTAEKLTALVPEARVIVGHGQMRERELE 853 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 112/662 (16%), Positives = 230/662 (34%), Gaps = 92/662 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 S P DQ L + L+ G A ++L +G+ F++A+V L+ P +V+ Sbjct: 10 SGLLPLIDQSPLFDSLFQALDRGEADISVL---DAGRGFSLASVYRRLKCPMLVITSQPE 66 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEH--IEQMRLSA 126 A +L ++ + E ++P + A + + +E+MRL+ Sbjct: 67 RARELLEQIAAYTGEE--------------PGFLPDPSLLPYQRAVSDRNSSLEKMRLAG 112 Query: 127 TKA--MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + ++V +V A+ P+++ + + + G+ I+ + ++ R +L Y + Sbjct: 113 ILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQ 172 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 GT+ RG ++DIFP ++D +R+E F +E L FDP + + + TI Sbjct: 173 ESIVEIPGTYSHRGGILDIFP-HTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTI 231 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++++ R +LL +N E R D+ +NE Sbjct: 232 SPASELF-------HLGQLTRKDINNRLDILLTDNLNPEFSR---TLSADINHLNEGLKP 281 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 E ++ ++ DYLP+D L+V+DE + + + + Sbjct: 282 EYPEFFAPLF-------NTSSILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLS 334 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G E L + + A+ G D + Sbjct: 335 HGELPSVYPRPYFNWAEISAMLKTKKRLIMASFGRESESLKLDF---------ASPDNYV 385 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++ L ++ + RV++ + A L E L+E Sbjct: 386 ------GRLSGLYEKLPELKGHTGRVVIVSH---QAARLAELLKERSILAVV-------- 428 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + +++ ++ G +L G + + +L + DA+ GF++ R + A Sbjct: 429 -QTDVLTPPPPASLSLVQG--ILGSGWSLSD-NLHILTDAELFGFVKQRRLPSKRPS--A 482 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R + + + +HG+ + + + Sbjct: 483 RKG--------------------VVLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYL 522 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A G P + D V + +H L Q A+ E A + +L Sbjct: 523 ILQYAGGDKLYVPTDQMDRVNRFIGSGDEPPSLHRLGTQEWQRAKEKASESAEETARELL 582 Query: 664 QL 665 + Sbjct: 583 DI 584 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 120/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q E + + Sbjct: 634 PMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLAT--FPV 691 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + + + + +H + + + Sbjct: 692 KVEVLSRF----RSQSEQKEVVENMEKGEVDICIGTHRLLQADIKFKDLGLVIIDEEQRF 747 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + +SATP L S V D V T + + Sbjct: 748 GVAHKEFFKKL--------RAQVDVLTLSATPIPRTLHMSMVGVRDMSVIETPPGERLPI 799 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA + L+ E I + N +V + L E +++ R H + Sbjct: 800 KTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIGHGQMA 859 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D E DVLV ++ G+D+P + + I AD+ G + L Q GR Sbjct: 860 EDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQ----LYQLRGR 915 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + K + +R K E G G + D+ G Sbjct: 916 VGRSSQ---LAYAYFL-YDKEKHLSGDAEKRLKTIYEAAELG---AGYGIAMKDLEIRGA 968 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + K G ++V ++ + L + + L+ Sbjct: 969 GTLLGVKQSGY--------INSVGFNLYTQMLSEAVAGLK 1000 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 111/658 (16%), Positives = 216/658 (32%), Gaps = 82/658 (12%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFF 81 R + L + L G + +A +A L+RP +++ P A + F Sbjct: 24 REILAFLGESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFA 83 Query: 82 PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE-HIEQMRLSATKAMLE--RRDVVV 138 + V +PS +K S+ + R+ A +V V Sbjct: 84 GNDLHRQDVPADR---RVWCLPSRS--GQKSQSLGKMATMARRMETLHAFRASIGSNVFV 138 Query: 139 VASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 ++V+ + L P++ L + G ++ + L E Y R + G F +RG Sbjct: 139 TSAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGG 198 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 V+D++ LR+E F +E+E + LF P T + + + + P + + + Sbjct: 199 VLDVYAPLY-RWPLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARER 257 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 A E + ++ E + L+ + E E+ Sbjct: 258 AREAVYADVR-------------EGRLTPAAGNVWLDKLQEGHQFGAFESIMSVFY---- 300 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIP--QIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 E T+++YL ++V ++ + ++ + R PS L P Sbjct: 301 -EKTVTVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIP 359 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ---VD 433 + Q I S + G +G + VR A + ++ Sbjct: 360 ERLIADGESFQQLIVNSLSGGTEPRAVFDMG-------TSGHEQLALSVRAHAEKERLLE 412 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L + ++ + K A L+E LE HG + Sbjct: 413 PLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHGTDTVL------------TLLPFG 460 Query: 494 LGEFD---VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 ++ V V + L G P L + + + G +T R+ ++V+G Sbjct: 461 AESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGK--------RTRRRSGKSVSG-- 510 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG---QNIAKTK 607 + + + +HGI G+ K++V + G + Sbjct: 511 ------------LFLSSFQDLHIGDFVVHVDHGI---GVYKELVHLAVRGIESDFLLLEY 555 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 G P+ + V + + Q KI +L G + A+ E A ++ ++L L Sbjct: 556 QDGDRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSL 613 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/408 (14%), Positives = 117/408 (28%), Gaps = 37/408 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q Q E G+ Sbjct: 663 PMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQSFTERFE--GFPV 720 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + L + VV +H + + Sbjct: 721 VVETLSRF----KTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLVIDE---- 772 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-I 423 + + + ++ + ++ATP L + + D T D I Sbjct: 773 ----EHRFGVKHKERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAI 828 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 E + + + + +V + + H + Sbjct: 829 ETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQSIYQTANAIGRLIPEAKIAVAHGQMK 888 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D + DVLV ++ GLD+P + + I ADK G + + Q GR Sbjct: 889 ERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQ----IYQLRGR 944 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + P I ++R + E G G + D+ G Sbjct: 945 VGRSSEQ---AFAYLLIPGEH-LISRDAQKRLRALLDFSELG---AGFKIALNDLQIRGG 997 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 I + G V ++ + L++ I E++G + Sbjct: 998 GTILGSSQSG--------HIAAVGYELYLELLEKTIKEMKGEERETES 1037 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 116/675 (17%), Positives = 204/675 (30%), Gaps = 105/675 (15%) Query: 31 GLAHQTLLGVTGSGKTFTIANVIAD---LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVE 87 TL GS +A + + T ++ + T A +L EM F P+ Sbjct: 8 SGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDLRYA 67 Query: 88 YFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR-----DVVVVASV 142 F P +T S ++ + RL+ + +R DVV+V + Sbjct: 68 LF-------------PDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPAT 114 Query: 143 SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 +A+Y L P V +D+ + +L Y+ Q G + VRG +ID+ Sbjct: 115 TALYRLAPPSFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDL 174 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEE 262 FP S + RV+LFD+E++ + FDP + + + +P + P + + + + Sbjct: 175 FPMGSL-VPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKR 233 Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 +E L + M SGIE Y + Sbjct: 234 WRELLDGDPTKSR-----------------IYKDMGNGVATSGIEYYLPLF-----FDET 271 Query: 323 PTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEF 382 T+FDYL +D +V+ Q DR R LP + Sbjct: 272 ATVFDYLGSDATVVLHGDLEPAFQRFWQDTKDRYRLVRDAPDRPALPPESLFLGAEQFYA 331 Query: 383 EALAPQTIYVSATPGNYELEKSGGDVV--------------DQVVRPTG----------L 418 A + + A + G + D + P G Sbjct: 332 RANGYAQLALKAGSPHPNPLPGGEGIKGDLLPLQGGEESKGDLLPLPLGEGRGEGSPYTE 391 Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 D + + V D L RVLV + E L ++L +S Sbjct: 392 FDSLPAMAVVRGAEDPLARFKGHVRNTAHRVLVLAESDGRRESLLDFLRASNVSPPAFNS 451 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 ++D + + + + L G E + I + + + R Sbjct: 452 ----------LQDFQTSDEKLGIATAALNTGFSWLEEGIDFITETELFAAGVTTRR---- 497 Query: 539 IGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILA 598 RN + + + I + + HGI + Sbjct: 498 -----RNKKQEQVS-------DVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDLGQD 545 Query: 599 LGQN--------IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + A P+ + + A + +H L + A+ Sbjct: 546 KNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKAKR- 604 Query: 651 EFEEAAQIRDQLHQL 665 + A QIRD +L Sbjct: 605 --KAAEQIRDSAAEL 617 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 105/315 (33%), Gaps = 29/315 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + Q R + R + + Sbjct: 748 LADGSVDIVVGTHKLLSQDVKFQRLGLLIIDE--------EHRFGVRHKETMKAMRAEVD 799 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L + + D V T + V ++ + ++ E + + Sbjct: 800 VLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLRELKRGG 859 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V ++ E LEE R H + E +++D +++L+ + Sbjct: 860 QVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTI 919 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + G+D+P + + + ADK G + L Q GR R+ + Y + P + Sbjct: 920 IETGIDVPSANTIVMSRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLMVPDIEGLT 972 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + +R E Q+ E G + D+ G +++ V Sbjct: 973 KQASQRLEAIQQMEE----LGSGFYLAMHDLEIRGTGEVLGESQSGN-------MLEVGF 1021 Query: 626 DMSPKALQQKIHELE 640 + + L + + L+ Sbjct: 1022 QLYNEMLSEAVASLK 1036 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 109/648 (16%), Positives = 214/648 (33%), Gaps = 86/648 (13%) Query: 22 RRLEEGLEDGLAHQTLLG-VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L Q LLG +TG+ +A + P +++AP+ A +L+ E+ +F Sbjct: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 Q + +T S ++ I RLS + + V++ Sbjct: 63 TD--------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIV 108 Query: 141 SVSAIYGLGDPDLYLK-MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 V+ + P +L L + G + + A+ +L Y DQ + G + RG + Sbjct: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQA 259 +D+FP S+ + R++ FD+E++ L +FD + + + + + P + T + I Sbjct: 169 LDLFPMGSE-LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELF 227 Query: 260 MEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG 319 + ++ +R + + +++ +GIE + Sbjct: 228 RSQWRDTFEVKRDP-----------------EHIYQQVSKGTLPAGIEYWQPLFFS---- 266 Query: 320 EPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKF 379 EP P LF Y PA+ L + + AR E R + L+ Sbjct: 267 EPLPPLFSYFPANTL--LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRV 324 Query: 380 EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI 439 +E + V + + + ++ Q + V Q L + Sbjct: 325 DELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA----------VQAQQKAPLDAL 374 Query: 440 RQRAAI-NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 R+ + V+ + ++ E L E L + + + +R + Sbjct: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM-------- 426 Query: 499 VLVGINLLREGLDMPEV-SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 I G + V +L I ++D G R AR + Sbjct: 427 ----IGAAEHGF-VDTVRNLALICESDLLGE------------RVARRRQD------SRR 463 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 T + I Q + EHG+ + G+ + T A P+ Sbjct: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 + +H+L G A+ + A ++RD +L Sbjct: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQ---KAAEKVRDVAAEL 568 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 21/275 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 ++ E I + +V + E L E R H + E Sbjct: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ D F+VLV ++ G+D+P + + I AD G + L Q GR R+ Sbjct: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ----LHQLRGRVGRS 906 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y +TP KA+ ++R + E+ G G D+ G Sbjct: 907 HHQ---AYAWLLTPHP-KAMTTDAQKRLEAIASLEDLG---AGFALATHDLEIRGAGELL 959 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + + + + + L+ + L+ Sbjct: 960 GEEQSGS-------METIGFSLYMELLENAVDALK 987 Score = 45.6 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 82/241 (34%), Gaps = 21/241 (8%) Query: 419 LDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVR 474 +D ++ + + + +++V V T ++ ++ + R+ Sbjct: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 Query: 475 YLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSER 533 + E+ +I+ ++ G+ D+L+G + LL+ + ++ L+ + + + G ER Sbjct: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 +A R L I ++ A+ R + + ++ Sbjct: 742 I------KAMRANVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREY 793 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-----GLMMQHAQ 648 ++ + + RG + D + + + L + + E G M + Sbjct: 794 DSMVVREAIL---REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 Query: 649 N 649 Sbjct: 851 E 851 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 242 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 114/687 (16%), Positives = 211/687 (30%), Gaps = 124/687 (18%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 + + GS +A A P +++A N A +L E+ F P+ V Sbjct: 41 SSKHSRPRYSNLQGSSDALALAQ-YAVQHSPLVIIAANALEAQRLVEEIPFFDPKLRVHL 99 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM----------------LE 132 +P +T S ++ + RL+ + Sbjct: 100 -------------LPDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPAS 146 Query: 133 RR-------------DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAEL 179 R DV+VV +A+Y L L G +D A +++ Sbjct: 147 GRGSERENQSSTSACDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLA 206 Query: 180 QYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP 239 Y Q G + VRG +ID+F S + R++LFD+E+E ++ FD T + + +P Sbjct: 207 GYNHVQQVLTPGEYCVRGGIIDLFAMGSV-LPYRIDLFDDEIETIATFDVDTQRTLYPVP 265 Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P + + + ++ + +++ Sbjct: 266 EIRLLPAREFPLDEKGQATFRQNFRDRFEGDPSKSR-----------------IYKDVSK 308 Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 +GIE Y + TLFDYLP L + H + + + D A + Sbjct: 309 GIAPAGIEYYLPLF-----FDQTATLFDYLPKIATLCL---HHNVDEAITSFGKDAASRY 360 Query: 360 TLVEYGFRLP------SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV----- 408 L+ + P LD E I SA L + G++ Sbjct: 361 NLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLPEGEGNLSSLSP 420 Query: 409 ----------VDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRM 458 + T + PI R +R A RVL+ + Sbjct: 421 GEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYA---GRVLLLAESLGR 477 Query: 459 AEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLV 518 E ++ YL+E+G E G+ ++G+ ++ G +P+ L Sbjct: 478 REIMSGYLKEYGLTPAVC----------EDYASFLAGQDKFMLGVGPVQIGFSLPDEQLA 527 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 + + + Q RA R ++ + + + Sbjct: 528 IVTETELYA--------AQPRSRANRAARKS----------NVEGMLRDLSELKPGDPVV 569 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHE 638 +E+HGI + + + A P+ + + A +H+ Sbjct: 570 HEQHGIARYRGLVNLDLGEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLHK 629 Query: 639 LEGLMMQHAQNLEFEEAAQIRDQLHQL 665 L A+ + Q+RD +L Sbjct: 630 LGSGAWDKAKRRAMQ---QVRDTAAEL 653 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 21/257 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAIN 446 + ++ATP L S + D V T + V+ + + + Sbjct: 835 DVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREAVLRELKRG 894 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V ++ E LE R H + + ++RD F+VL+ Sbjct: 895 GQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQRFNVLLCST 954 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ G+D+P + + + AD+ G + L Q GR R+ + Y + SM Sbjct: 955 IIETGIDVPTANTIIMNRADRFGLAQ----LHQLRGRVGRSHHQ---AYAYLLVDSMDG- 1006 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + ++R + + E+ G G + D+ G +++ E + Sbjct: 1007 LTAQAKKRLEAIQAMEQLG---SGFFLAMHDLEIRGAGEVLGESQSG-------EMQEIG 1056 Query: 625 MDMSPKALQQKIHELEG 641 + L I L+ Sbjct: 1057 FSLYNDMLAAAIASLKQ 1073 Score = 43.3 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 417 GLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGER 472 +D +I + + L A+ ++V V T ++ ++ + + R Sbjct: 705 KPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFADWPIR 764 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRS 531 + L E + ++DL G+ D+++G + L+++ + + LV + + + G + Sbjct: 765 IAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEEHRFGVQQK 824 Query: 532 ER 533 E+ Sbjct: 825 EK 826 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 111/677 (16%), Positives = 205/677 (30%), Gaps = 82/677 (12%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + ++L + TL+ S + + + P +V+ Sbjct: 13 IAGLVELALSAPTFQQLMQRAGGRPDELTLI-APASARLLVASALARQ--GPLLVVTATG 69 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSAT 127 A L E++ F + A +PS +T + S RL A Sbjct: 70 READDLAAELRGVFGDA--------------VALLPSWETLPHERLSPGVDTVGTRLMAL 115 Query: 128 KAMLERRD-------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 + + D VVV SV ++ P L + L LTVG ++ RL EL Sbjct: 116 RRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELA 175 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP- 239 Y R D +RG F VRG ++DIF A + + +RVE + +E+ + +F + + I Sbjct: 176 YTRVDMVGRRGEFAVRGGILDIF-APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDI 234 Query: 240 -RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN 298 + + + +A + L E +T L + Sbjct: 235 HTLVAFACRELLLSEDVRARAAQ-------------LAARHPAAESTVTGSASDMLAKLA 281 Query: 299 ELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY---RGDR 355 E G+E L G L D LP ++V + + + R Sbjct: 282 EGIAVDGMEAVLPVLWSDGHAL----LTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFL 337 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRP 415 ++ G A + Q +A G+ + + D+ Sbjct: 338 EASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHP--WWTLSQLSDESAIE 395 Query: 416 TGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY 475 + R +D++ + +R A + A + E L E Sbjct: 396 LDVRAAP-SARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGM 454 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 L D + G VL G LR+G+ +P +LV I + D G S Sbjct: 455 L--DPGQ--------APKPGVVGVLQG--PLRDGVIIPGANLVVITETDLTGSRVSAAE- 501 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 G+ + + P A + ++ E T G ++ + Sbjct: 502 ----GKRLAAKRR------NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLV 551 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEA 655 + P+ D + + + + L G + + Sbjct: 552 LEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ--APALSRLGGSDWANTK------- 602 Query: 656 AQIRDQLHQLRELFIAA 672 + R + ++ ++ Sbjct: 603 TKARRAVREIAGELVSL 619 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 63/425 (14%), Positives = 120/425 (28%), Gaps = 37/425 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q Q E M S Sbjct: 669 PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERM------S 722 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G + LS + D L + +V +H + + + Sbjct: 723 GFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRF 782 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +SATP LE S + + T + Sbjct: 783 GVEHKEHIKSL--------RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV 834 Query: 425 VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V D + + +R+ + + + + E R + H + Sbjct: 835 LTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMP 894 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++ E D+LV ++ GLD+ + + + AD G + L Q GR Sbjct: 895 EDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQ----LHQLRGR 950 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + ET R N E G G+ + D+ G Sbjct: 951 VGRSRERG---YAYFLYPPQVP-LTETAYDRLATIAQNNELG---AGMAVALKDLEIRGA 1003 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 N+ + G V D+ + + + + A A + +D Sbjct: 1004 GNVLGIEQSG--------HVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKD 1055 Query: 661 QLHQL 665 L Sbjct: 1056 VRIDL 1060 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats. Identities = 121/668 (18%), Positives = 214/668 (32%), Gaps = 83/668 (12%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP-----------TMV 62 + + A+ R E L G + TL V +A++ L + + Sbjct: 22 ALPKSAALTRAVEALRRGDSP-TLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVH 80 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + T +A G + PE V +P+ D S N I Sbjct: 81 VARDGTRSAAFAGALAFVAPEIEVLS-------------IPAWDCQPYDRVSPNPAIAAE 127 Query: 123 RLSATKAML-----ERRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRL 176 R++A + E R VVV +V+A+ VG +D I+ L Sbjct: 128 RMTALSRLARTRSSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWL 187 Query: 177 AELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVS 236 + R G + VRG +ID+ P +R++ F + +E + FDP T + + Sbjct: 188 EANGFLRTGTVRDTGEYAVRGGIIDLSPPGL-PNPVRLDFFGDTLESIRSFDPETQRTIG 246 Query: 237 TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM 296 + + P + E I + + A R E Sbjct: 247 QLRSLDLVPMSEVQLTTETIRRFRQGYVAAFGA-----------------ATRDDRLYEA 289 Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRA 356 ++E +G+E++ R TLFDYL L+ + + G + Sbjct: 290 VSEGRRAAGLEHWMPLFYDRL-----DTLFDYLAGVPLVFDKDVDDAAGERLGQVQEYHD 344 Query: 357 RKETLVEYGFRLPSAL-----DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + ++ + D L E+ TP E G +VD Sbjct: 345 ARCEALKAPQPGVAPYKPLGSDALYLSPAEWAKRVEGARVARLTPF-AVPESPGRPIVDC 403 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 P P V D + +R V++ ++ + L L +HG Sbjct: 404 EAEPARNFAPERAQEGVNV-FDAAVQHVRALQGSGHHVILAAWSEGSRDRLCGVLTDHGL 462 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 + + L+ G+ DV V + L G + L + + D G Sbjct: 463 P-----KPKTVTRLSDTL-ALKRGQ-DVAVAVWGLEAGFTIE--RLAVVAEGDILG---- 509 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 L++ +A R IL ++P + R K +T G Sbjct: 510 -DRLVRPKRKAKR--PQDVILEVQALSPGDLVVHADHGIGRFTGLK-----TVTAAGAPH 561 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNL 650 ++I G + +R E +VP+D + A Q + +L+ +++ A L Sbjct: 562 DCLEIQYNGGLLLLPVENIELLTRYGSEEADVPLDKLGGGAWQARKAKLKRRILEMAGAL 621 Query: 651 EFEEAAQI 658 A + Sbjct: 622 IKVAAERF 629 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 102/315 (32%), Gaps = 29/315 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + G + +G L Sbjct: 752 LADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKAL--------RAEVH 803 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + +SATP L+ + V + + T +D + V L+ E + + Sbjct: 804 VLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLLVREALLRERYRGG 863 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + +++ +L+ + H + + +++ G+FD+L+ + Sbjct: 864 QAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTI 923 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+P + + + AD G + L Q GR R+ KA Y TP KA+ Sbjct: 924 VESGLDIPTANTLIVHRADMFGLAQ----LYQLRGRVGRS---KARAYALFTTP-EGKAL 975 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 RR K + G D+ G + V Sbjct: 976 TVQAERRLKVLQ---SLDTLGAGFQLASHDLDIRGAGNLLGDEQSG-------HIKEVGY 1025 Query: 626 DMSPKALQQKIHELE 640 ++ + L+ + L+ Sbjct: 1026 ELYQQMLEDAVAALK 1040 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 114/689 (16%), Positives = 221/689 (32%), Gaps = 81/689 (11%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA--DLQRPTMVLAPNKTLAA 71 + EA+ + L G + +LG G + +A +A + P + +AP+ T A Sbjct: 2 ALSALEALPVVLTALRSGRRKR-VLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQ 60 Query: 72 QLYGEMKEF--FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 + ++ F E A Q VP D D S + R++A + Sbjct: 61 TVAADVAFFAGSGEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALER 120 Query: 130 MLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 + +++ S+ ++ + + ++ + + L+ Y R D Sbjct: 121 LRAGEPELIILSLRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVG 180 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F +RG ++D++ + R+E + +E+ER+ +FDP + + + + ++P Sbjct: 181 DPGCFAIRGGIMDVWVPL-ERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRE 239 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 V R + +LE +E T+ + + GI+ Sbjct: 240 TVATGSRTTANALRL---------AVLELGDRIEVPS--SATRQVIANLGAGVDFFGIDA 288 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + ++ DYLPA+ +DE + M VE + Sbjct: 289 LTPVFHDGLA-----SVADYLPANARWYLDEPEALVGLGERMADELDFEYRRAVEAKHLV 343 Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV--- 425 + D + + E L + V A Y+ E++ GD + G P+ Sbjct: 344 AAPEDFFCTREQLREQLRGAAV-VGARLDLYDPEQTKGDRRGVIRVDLGRNAPLRAKLEA 402 Query: 426 ----------RPVATQVDDLLSE--------IRQRAAINERVLVTTLTKRMAEDLTEYLE 467 RPV + +L + V++ AE LT L Sbjct: 403 ARGQKGGELLRPVVDHIRELGVHADATLGGALDPSERDPWDVVLVAPNTTHAERLTAMLR 462 Query: 468 EHGERVRYL------HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAIL 521 +G R HS +L+ V+ G L EG L+ + Sbjct: 463 GYGLRPEGTSKQEREHSSGAGGAIELGGLELQAPRLRVIAGT--LSEGFASEGDRLLVVS 520 Query: 522 DADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE 581 +++ G + + +A + + GD + + + Q Sbjct: 521 ESEIFGPVARREGRRRRRRKAG-VASLSQLSIGDYVVHVVHGVGRYVGLTKLAAQGVP-- 577 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 G + AK P+ + +S +A K+ + G Sbjct: 578 ------------------GDFVIVEYAKKDKLYLPVHRIGEIERYVSAEAKAPKLDRMGG 619 Query: 642 LMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 Q +A +IR + QL E + Sbjct: 620 QTFQA-------KAKKIRSDVRQLAEELL 641 Score = 173 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/457 (15%), Positives = 139/457 (30%), Gaps = 50/457 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + D + + P V + ++ Sbjct: 679 DAIDSVQD-DLSSQR-----------PMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAV 726 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q E M+ G+ N + R + + VV Sbjct: 727 LAPTTVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRT------LAGIKDGTVDVVV 780 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H + + + +G + + + ++ATP Sbjct: 781 GTHRLLSRDVRFKELGLVIIDEEQRFGVKQKDRFKKL--------KTSVDMLTLTATPIP 832 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR 457 L S + + + T +D + + D +L E IR+ A ++ Sbjct: 833 RTLHMSLLGMREISMITTAPVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVM 892 Query: 458 MAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E+ + E R + H + + + D E DVLV ++ GLD+P Sbjct: 893 GIEEHAVRIRELVPEARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRA 952 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I AD+ G + L Q GR R+ K Y + S+ + + E RRR + Sbjct: 953 NTMFIARADQFGLAQ----LYQLRGRIGRS---KLRAYCYLMVASLER-LSEDARRRLEA 1004 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + + E G G N D+ G + + + + + L + Sbjct: 1005 IQRHSELG---AGFNVASQDLEIRGAGDLLGRRQSGS-------IQAIGFEAYARILGEA 1054 Query: 636 IHELEGLM--MQHAQNLEFEEAAQIRD-QLHQLRELF 669 + EL G + + F+ A + D + + Sbjct: 1055 VAELRGDPISQETDPEVAFDVPAFLPDTYVEDVGARL 1091 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 237 bits (604), Expect = 1e-60, Method: Composition-based stats. Identities = 94/628 (14%), Positives = 177/628 (28%), Gaps = 67/628 (10%) Query: 27 GLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAV 86 L+ + +L ++ S + ++L N A + ++ F Sbjct: 17 SLKGQTSTWSLNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAE---- 70 Query: 87 EYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY 146 P P +T S ++ I RL + + +++ VS + Sbjct: 71 --------TDYPILSFPEWETLPYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLI 122 Query: 147 GLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPA 205 P + K L G +D A R+L Y R Q + G F VRG +ID++P Sbjct: 123 QKVVPHQFIEKYTFLLQCGETVDIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPM 182 Query: 206 ESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKE 265 S R++LFD+E+E + FDP T + V +I + + P Y E I + + Sbjct: 183 GS-RTPYRLDLFDDEIETIRSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRS 241 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL 325 R + + G+E Y T Sbjct: 242 HFGD-----------------DARNSQLYRSVKDGQTVDGLEYYLSLFH-----SNIATF 279 Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 FDYLP+D L + +R L + Sbjct: 280 FDYLPSDCLFFNQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSALK 339 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 A I S P + + + + P+ ++ Q + Sbjct: 340 AFHRIQFSLQPTDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQYA---------SEH 390 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 N R+L + E L L +H + ++ + + + + + Sbjct: 391 NGRILYCAESTGRRETLLTILSKH----PQFKGKLPKQ--IDSWGEFKTSKAPYEIIVGP 444 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 L + + + ++ G IQ R R + + I + + I Sbjct: 445 LED--SVYTDDFCILSESQIFGQTV-----IQKRRRK-RKHSEFDNAISNLIELDLGQPI 496 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP- 624 + ++ +T QG + + I G Sbjct: 497 VHFDH---GVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASAETA 553 Query: 625 --MDMSPKALQQKIHELEGLMMQHAQNL 650 + + + + A L Sbjct: 554 PLHKLGSDKWDKAKRKAAEKVRDVAAEL 581 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 97/298 (32%), Gaps = 29/298 (9%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQR 442 + ++ATP L + D+ D + T + V D++ E + Sbjct: 759 RTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQTFVQDWNPDVVKEACLRE 818 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVL 500 ++ + E + E ++ + H + E +++++ F++L Sbjct: 819 IRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQMHERELEQVMQNFYHRRFNIL 878 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ G+D+P + + I ADK G + L Q GR R+ + Y T Sbjct: 879 VCTTIIETGIDIPTANTILIHRADKFGLAQ----LHQLRGRVGRSHH---KAYAYLFTAG 931 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 A + E+R K++ G D+ G + + Sbjct: 932 KALMTKDAEKRLTAIAKHDT----LGAGFMLASHDLEIRGAGELLGDGQSG-------QI 980 Query: 621 DNVPMDMSPKALQQKIHELE-GLMMQHAQNL----EFEE---AAQIRDQLHQLRELFI 670 + + L + + L+ G + L E E A D L + + Sbjct: 981 HEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLV 1038 Score = 42.1 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 40/389 (10%), Positives = 113/389 (29%), Gaps = 14/389 (3%) Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE----VIDIFPAESDDIALRV 214 L + + L + N + R E ++ P + ++ Sbjct: 366 LTIQSNSEYPLAKLNAFLDQYASEHNGRILYCAESTGRRETLLTILSKHPQFKGKLPKQI 425 Query: 215 ELFDEEVERLSLFDPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRK 272 + + E + ++ + G + ++ F I ++ + + E Sbjct: 426 DSWGEFKTSKAPYEIIVGPLEDSVYTDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAIS 485 Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 L+E + L + E +G P T + Sbjct: 486 NLIELDLGQPIVHFDHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRY 545 Query: 333 G---LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 + + R + + + + + RP + + A Sbjct: 546 TGASAETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDEEAYAR 605 Query: 390 IYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERV 449 +++ + V ++ +D +I + + + A ++V Sbjct: 606 FRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQV 665 Query: 450 LVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN- 504 V T ++ E+ + R+ L E +I+ ++ + D+++G + Sbjct: 666 AVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHK 725 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSER 533 +++ + + L+ I + + G + E+ Sbjct: 726 IIQNDMQFGNLGLIIIDEEHRFGVRQKEQ 754 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 191/640 (29%), Gaps = 67/640 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q A+ + + G + + + P +V+ P A + Sbjct: 11 QETALTGELDERSIRAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTAL 70 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P+S+ + I +L +L D Sbjct: 71 LELMG--------------WSQAGLYPTSEGSPYEPFDPTSEITWGQLQVLSDLLGDPDA 116 Query: 137 V---VVASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + +VA+ + L PD+ L G +D A+ LA+L Y R + Q G+ Sbjct: 117 LSWAIVATERCLQPHLPPPDVLKTKTRTLRKGDQVDLEALGETLAQLGYERVNTIEQEGS 176 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RG+++DIFP S+ + +R+E F EE+++L FDP + + + + + P Sbjct: 177 WSRRGDIVDIFPVSSE-LPVRLEFFGEELDKLREFDPASQRSLDPVDALRLTPTGFGPL- 234 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 I ++L LE E E + G G+ Sbjct: 235 ----------IADQLRETMPDGLEPLLGAEGT----------EQLLNGGTPEGMRRLMGL 274 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 P +L DYLP +V+DE + + Sbjct: 275 -----AWGQPASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMAAEAGLDEGDR 329 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D E A + + + + VDQ L + P Q Sbjct: 330 DRLWPAVLHREIEAAYALTEVF----HGFDMAELLEVDQHPNSFDLASRPVAAYP--NQF 383 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 L I+ V + + A LEEH R++ + D+ +I Sbjct: 384 GKLGELIKGFQTERTAVWLVSAQPSRA---VALLEEHDCISRFVPNAGDSNAISRLIEQN 440 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 V G L GL +P + + D + G S R A + Sbjct: 441 TPVALKVR-GTAELE-GLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRT----- 493 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV--VDILALGQNIAKTKAKG 610 + P+ + R ++ + G + V +A + Sbjct: 494 ----VDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADGILRVAADQLGS 549 Query: 611 RGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 G+ R E M A + + + + A +L Sbjct: 550 LGRYRATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDL 589 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/410 (16%), Positives = 129/410 (31%), Gaps = 35/410 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + I+ A Q + E Sbjct: 642 PMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIKV 701 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + N R S R ++ D L + V +H + + + + Sbjct: 702 ALLNRFRTASERK------SILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRF 755 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-LDPII 423 G + + +SATP L S V + + T L I Sbjct: 756 GVNQKEKIKVL--------RKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPI 807 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 + + + + S IRQ +V E++ L E G ++ H + Sbjct: 808 KTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQMA 867 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + GE DV++ ++ GLD+P V+ + I DA + G + L Q GR Sbjct: 868 EGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQ----LYQLRGR 923 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + P ++ +T R+R + + + G G + D+ G Sbjct: 924 VGRSG---IQAHAWLFYPG-NASLSDTARQRLRAIQEFAQLG---SGYQLAMRDMEIRGV 976 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + + + D+ + LQ+ + E++G + ++ + Sbjct: 977 GNLLGVQQSG-------QMETIGFDLYMEMLQESLAEIQGQDIPSVEDTQ 1019 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 97/617 (15%), Positives = 200/617 (32%), Gaps = 78/617 (12%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 + VT + +++ L R +V++ N T A L+ E F Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFIS-------------A 105 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYL 155 Y+P + + +++ R+ A +L ++ SV+ P Sbjct: 106 SDLVYLPGQEVLPYEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQ 165 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 + L G ID ++L +L +L Y R D G F ++G ++DI+ + S + +R++ Sbjct: 166 GRAITLEKGKEIDLESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQE-PVRID 224 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LF EE+E + FDP T + + + R + P Y+ E+ + +K Sbjct: 225 LFGEEIESIRTFDPDTQRSMVDLNRAVLLPVDEYILSDEQKKEYQNILKYY--------- 275 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + E GY E + + Y +L Sbjct: 276 -------------SSSLHIPEIPEAGYGIYYEELVPLVRENHG------ILSYFSEPPIL 316 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + + +I + R + E + L + D EEF L+ Sbjct: 317 LFPSPNSVNQRILHLEREYLSLFEKRSQ--EVLCAPPDKLLSFGEEFRVLSELVGLSFVG 374 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT 455 G D+V + I EVR +++ RA ++++T+ Sbjct: 375 LPPRN----GSDLVSCLKEAPAFKGKIREVREKISEL---------RAEGGWKIVLTSSF 421 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + + L E+ G + ++ I L + D + ++ LR G Sbjct: 422 EAQTKRLQGLFEKEGIVL------LNEGATEPIPFHLGKHKSDAFLVLSELRNGFIFENQ 475 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 ++ + + D G + R + + + D I R K Sbjct: 476 KILILSENDIFGRE------YKRKTRFKKQNSKALQSFIDLKEGDPVVHIHHGVGRFLKI 529 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQ 633 ++ N G + + + G + + + P + + Sbjct: 530 ERTNA------GGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGTESPRLDSLGKNTWK 583 Query: 634 QKIHELEGLMMQHAQNL 650 + ++ + A++L Sbjct: 584 KTKDRVQKAVETLAEDL 600 Score = 178 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 100/308 (32%), Gaps = 28/308 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PIIEVRP 427 + + + ++ATP L + + + + T + +E Sbjct: 763 EQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETYV 822 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 + D + IR + +V E T+YL E V LH + E Sbjct: 823 LEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDEI 882 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 E + D ++D+LV ++ G+DMP V+ + + AD G + L Q GR R+ Sbjct: 883 EETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQ----LYQIRGRVGRS 938 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + + P + E+R +Y E G + D+ G Sbjct: 939 DR---KAFAYLLLPKDRVVTEQAEKRLNTIYEYQE----LGSGFKVAMRDLEIRGAGNLL 991 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE-------FEEAAQI 658 K + V D+ + L++ I ++G + F I Sbjct: 992 GKEQSGD-------IMEVGFDLYVRMLEEAIARIKGEEVVVEVRTSVTLNTNFFIPETYI 1044 Query: 659 RDQLHQLR 666 D ++ Sbjct: 1045 SDTRQKIE 1052 Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 32/309 (10%), Positives = 85/309 (27%), Gaps = 18/309 (5%) Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + + L + + + + Sbjct: 582 WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAI 641 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK----RMA 459 + V + + + +D ++ + + + + A ++++ T + Sbjct: 642 ---EAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHY 698 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLREGLDMPEVSLV 518 + RV + + E EI+ D LG+ D+++G +L L + L+ Sbjct: 699 NTFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNLGLL 758 Query: 519 AILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 I + + G E R N +L + T R Sbjct: 759 IIDEEQRFGVNHKEA--------IKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIAT 810 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG--KSRPIVEPDNVPMDMSPKALQQKI 636 ++ + + + + L + + G+ + + + + I Sbjct: 811 PPKNRQSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSI 870 Query: 637 HELEGLMMQ 645 L G M + Sbjct: 871 GILHGQMTE 879 >UniRef50_O66085 Extracellular protein Exp5 (Fragment) n=1 Tax=Lactococcus lactis RepID=O66085_9LACT Length = 455 Score = 234 bits (596), Expect = 9e-60, Method: Composition-based stats. Identities = 185/273 (67%), Positives = 226/273 (82%), Gaps = 1/273 (0%) Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 QRL QRT +D+EM+ E+GYC+G+ENYSR + GR GEPP TL D+ P D ++++DESH+T Sbjct: 177 QRLEQRTNYDIEMLREMGYCNGVENYSRHMDGREEGEPPYTLLDFFPDDFMIMIDESHMT 236 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + Q+ GMY GDRARKE L YGFRLPSALDNRPLK EEFE+ Q +YVSATPG+YE+E+ Sbjct: 237 MGQVKGMYNGDRARKEMLCNYGFRLPSALDNRPLKREEFESHVHQIVYVSATPGDYEMEQ 296 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 + +V+Q++RPTGLLDP++EVRP+ Q+DDL+ EI +RA NERV VTTLTK+M+EDLT Sbjct: 297 TDT-IVEQIIRPTGLLDPVVEVRPMMGQIDDLVGEIHKRAEKNERVFVTTLTKKMSEDLT 355 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 Y +E G +V+Y+HSDI T+ER EIIRDLRLG FDVLVGINLLREG+D+PEVSLVAILDA Sbjct: 356 AYFKEMGIKVKYMHSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDA 415 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 DKEGFLR+ER LIQTIGRAARN G ILY D Sbjct: 416 DKEGFLRNERGLIQTIGRAARNSEGHVILYSDM 448 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 113/673 (16%), Positives = 209/673 (31%), Gaps = 52/673 (7%) Query: 22 RRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR---PTMVLAPNKTLAAQLYGEMK 78 + L + A G+T + A + P +V+AP+++ A L ++ Sbjct: 8 EAIRAVLSETDAPVIAHGLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVA 67 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---- 134 F P + P ++P+ DT + S + R++ + Sbjct: 68 FFLPHAQHAAAGTEPLAPPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLG 127 Query: 135 DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 VVV+++ + + + + L L D+ A RL Y R GTF Sbjct: 128 PVVVLSAPALLRRVMPREALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFA 187 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR- 253 VRG VID+F R+ELF + VE + LFDP + + + + + ++P V Sbjct: 188 VRGGVIDVFTPLY-RYPARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEG 246 Query: 254 ----ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 RI+ A + A R+VL + E + T + L + Sbjct: 247 AEVRRRILDAADAAHHPSAETRRVLERIDSGEEFVGIETLTPAFHTHLAPLASYLVAGDA 306 Query: 310 SR----FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDR------ARKE 359 + G+ D +D+ + P D Sbjct: 307 PPACWVIVDPDAIGQAAEDEHDVAEDRYRERLDDGRLAFPPSDHYVSPDELRATLAEHAY 366 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYEL------EKSGGDVVDQVV 413 L G + A + L + A AP+ + + VD Sbjct: 367 RLEARGLEMYQAAADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDNR 426 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 L+ + + L+ I + V T A L L ++ Sbjct: 427 LLRASLERTR-RQAADELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTA 485 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 + ER + L G V + L G + LV + + G Sbjct: 486 HVI------EERSVDVDALSPGAPPV-IYPGELSAGFALRTDKLVMLTADEIFGPR---- 534 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI-TPQGLNKK 592 R + + + ++A I + + + HGI +GL K Sbjct: 535 ----------RRTSVRQRAAARRARKALAGGISDFSQLAPGDHVVHAMHGIGLYRGLAKL 584 Query: 593 VVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF 652 V + + +G P+ V + + ++ +L G+ Q A+ Sbjct: 585 PVSATGPAVDFLHIEYRGGQFYLPVYRLGEVSRYVGAEGHAPRLDKLGGVTWQKARKKAS 644 Query: 653 EEAAQIRDQLHQL 665 + + ++L +L Sbjct: 645 AQVKALAEELLKL 657 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 61/446 (13%), Positives = 113/446 (25%), Gaps = 66/446 (14%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P + + + + P V + ++ A + Sbjct: 689 PDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAALLAPTTVLV 748 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q E R L A + +V +H + + Sbjct: 749 EQHYATVCER---FAGWPVSVGRLSRFQSRAEQLDT---IKGLAAGTVDLVVGTHRVLSK 802 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G L + ++ATP L + Sbjct: 803 DVRFKDLGLLVIDEEQRFGVTHKERLKRV--------RTQLDVLTLTATPIPRTLHLAMS 854 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKR-------- 457 + D + T D VA D +L E IR+ +V Sbjct: 855 GLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSKG 914 Query: 458 ---------------------MAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRL 494 ++ E+L R H + +++ D Sbjct: 915 KVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVS 974 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G ++LV ++ GLD+ + + + AD G + L Q GR R+ + Sbjct: 975 GNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQ----LYQLRGRIGRSKQR---AFC 1027 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + P K + RRR + + E G G D+ G + Sbjct: 1028 YLLVPPPEK-LSSDARRRLETLQRFSELG---AGFQIASHDLEIRGGGELLGAKQSG--- 1080 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELE 640 V + L++ + EL Sbjct: 1081 ----AIAAVGFEAYAAMLEEAVAELR 1102 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 81/474 (17%), Positives = 159/474 (33%), Gaps = 70/474 (14%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 ++ +A + +R +VL + A +L + F P + Sbjct: 16 NLSQGSLPLALARYLPH-KRLKVVLTQDAEQALRLQTAWRFFRPHDTA------------ 62 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDP-DLYLKM 157 ++P +T + S ++ + RLSA + V+ V+ P Sbjct: 63 -VFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGR 121 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L G +D + L + Y G F VRG ++D+FP S+ + R++LF Sbjct: 122 TFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSE-MPYRIDLF 180 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 D+E++ + FD T + +S + + P + T E +EE+ Sbjct: 181 DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPND---- 236 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + ++ + +G+E Y TLFDY+ D L V Sbjct: 237 -------------AAVYKAVSNGHFGAGVEYYLPLFFE----NELETLFDYIGEDALFVS 279 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + ++R E + L PQ +Y+SA Sbjct: 280 L--GDVHAEANRFWSDVKSRY---------------AMAQGDETYPPLLPQHLYLSADVF 322 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRA-AINERVLVTTLTK 456 L+ G + D + L D + Q D+ L ++ A R+L+ + Sbjct: 323 AGRLKNYGQVLPDVSGKEHALPDLAVNR-----QSDEPLQALKDFQTAFEGRILLCAESL 377 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 E + +L+++G + + + + +++ + L G Sbjct: 378 GRRETMLGFLQQNGLKAKSVSD----------WQGFLSAHEPLMITVAPLAYGF 421 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 103/319 (32%), Gaps = 31/319 (9%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + L + +V +H + + +G R L Sbjct: 925 LEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVRQKEQLKRL--------RA 976 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAA 444 + ++ATP L + + D + T + V + + + Sbjct: 977 NVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELK 1036 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V E++ E LE R H + E +++RD F+VL+ Sbjct: 1037 RGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLC 1096 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D+P + + I ADK G + L Q GR R+ + Y +TP Sbjct: 1097 STIIETGIDIPNANTIIINRADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPEY- 1148 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 I + +R +E G G + D+ G + + E Sbjct: 1149 --ITKDAEKRLDAIAAADELG---AGFTLAMQDLEIRGAGEILGEGQSG-------EMIQ 1196 Query: 623 VPMDMSPKALQQKIHELEG 641 V + + L+Q + +L+ Sbjct: 1197 VGFTLYTEMLKQAVRDLKK 1215 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 112/644 (17%), Positives = 200/644 (31%), Gaps = 67/644 (10%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 ++ +++ E L L G+ +G+ A + DL R ++ P + A Sbjct: 2 YEALLKSTAEYQKIAESLHT-PGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEA 60 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++K AV P D + E RLS A+ Sbjct: 61 THFADDLKALGLTAAV---------------FPPRDFMLRPVEGAGREYEYRRLSVLGAL 105 Query: 131 LERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V A+ D +L+ L L GM+ ++ A++ RL Y R Q Sbjct: 106 AGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDG 165 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F VRG+++DI+ A RVE +D+E++ L+ FD LT + ++ + + P Sbjct: 166 PGQFSVRGDIVDIY-APDMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREV 224 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + E A + ++ + + + + T+ DL ++ ++ Y Sbjct: 225 LFGS----------TAETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKY 274 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 P TL D+L + V+DE L+E G L Sbjct: 275 YGI-----RYPQPATLLDHL-DSPIFVLDEVGGIRDAQKATEYRRGEELTGLLEEG-VLC 327 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 LD ++ A + + N+ + + D + Sbjct: 328 PGLDVLYQTMDDLAIAAQKQ--STLLCENFLRGMNEFKLKDLINVEA------FAAPNWG 379 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L ++ A V + + T + A LT L + G V + Sbjct: 380 GDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKGYSVS-----MS-------- 426 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 RD+R + V V L G P I + + G + + R N Sbjct: 427 RDVRPAKGIVQVLPGHLTAGCTFPFAHAAVIS-SRRHGLDEEAAAENKR-----RKKNKN 480 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 A+ I P + E G K + I G ++ Sbjct: 481 ALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAI-----KDYLKIQYSGSDVLYVPVT 535 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 P + K + + + A+ + E Sbjct: 536 QLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQE 579 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 35/409 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP + + + ++ Q L M Sbjct: 632 YPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVK 691 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G+ LS + L + + +V +H + + + + Sbjct: 692 IGM------LSRFRTAKQQKETLRGLQSGSVDIVVGTHRLLSKDVRFHDLGLVIIDEEQR 745 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PI 422 +G + L + + + +SATP L + + D ++ Sbjct: 746 FGVKHKEKLKENFIGVDM--------LTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQP 797 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 +E + L +++ A +V E ++ + RV H + Sbjct: 798 VETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAHVSQLVPGARVGIAHGKM 857 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + + L GE D+LV L+ G+D+ + + I DAD+ G + L Q G Sbjct: 858 TEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMGLAQ----LYQIRG 913 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ KA Y K + + ++R + G G + D+ G Sbjct: 914 RVGRSGR-KAYAYFTF---RRDKTLTDIAQKRLSAIREFTAFG---SGFRIAMRDLQIRG 966 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 ++ + V D+ K L Q I +G +Q ++ Sbjct: 967 AGSLLGHSQ-------HGHMEAVGYDLYVKMLGQAIARAKGEPVQRDKS 1008 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 197/655 (30%), Gaps = 82/655 (12%) Query: 25 EEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ------RPTMVLAPNKTLAAQLYGEMK 78 + L G GV F IA + L + + +A + A+L +++ Sbjct: 19 LDRLAGGDGAIRASGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLE 78 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRD 135 F P V F P+ D S + IE R++ + + Sbjct: 79 FFAPGADVLSF-------------PAWDCVPYDRVSPDSDIEARRIATLARLAHAKGGKP 125 Query: 136 VVVV-ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 ++V +V+A P K L G + ++ RL + R + G + Sbjct: 126 AIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPGEY 185 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 VRG ++D++ R++ F + +E + FDP+T + +T T+ P + + Sbjct: 186 AVRGGILDLYVPGHAR-PARLDFFGDTLETIRTFDPVTQRTQATRDGVTLLPISEIPSGD 244 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + + E + E ++ G+E++ Sbjct: 245 AAVKMFRQRYVELFGPGKGD-----------------DALYEAVSAGTRYPGVEHWLPLF 287 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL- 372 +LFDYLP + + + + + +E Sbjct: 288 YDG-----MDSLFDYLPNAVVTLDHLADDAAARRLETIADHYEARREGLEQRSFGAPPYK 342 Query: 373 ----DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + L EE++A + P K+ + G + Sbjct: 343 PLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQI--DFKGKQGRSFALERSESS 400 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + + IR ++ +R ++ T E L L H R+ + + + + + Sbjct: 401 DKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVANIAEVRKADKS 460 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 L+G + G + P+ L I + D G + I R Sbjct: 461 AVSFA------LLG---IESGYETPD--LAIIAEQDILGD--------RLIRRRKAKKAS 501 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++ +TP ++ I G V++ G + Sbjct: 502 DVLVEASSLTPGDL-----MVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGDKLFLPI 556 Query: 609 KGRGKSRPI--VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + E + + Q + +L+ + A+ L + A +R+ Sbjct: 557 ENMELLTRYGSDEGTAQLDKLGGASWQGRKAKLKKRIRAMAEEL--IKVAALREM 609 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAIN 446 + ++ATP L+ + V + V T +D + + L + + Sbjct: 782 HVLTLTATPIPRTLQLALTGVREMSVIATPPVDRLAVRTFITPFDPVTLREALLRERYRG 841 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGIN 504 + +++ +L E +R++ H + + +I+ EFDVL+ Sbjct: 842 GQSFYVVPRISDLDEVATFLREQVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLSTT 901 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P + + + AD G + L Q GR R+ Y P K Sbjct: 902 IVESGLDIPNANTLIVHRADMFGLAQ----LYQLRGRVGRSKTR---AYAMFTIPPNGKI 954 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + E+R K G D+ G + V Sbjct: 955 TPQAEKR----LKVLHSLDSLGAGFTLASHDLDLRGAGNLLGDEQSG-------HIKEVG 1003 Query: 625 MDMSPKALQQKIHELE 640 ++ L++ + L+ Sbjct: 1004 YELYQSMLEEAVAALK 1019 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 231 bits (588), Expect = 9e-59, Method: Composition-based stats. Identities = 101/653 (15%), Positives = 208/653 (31%), Gaps = 95/653 (14%) Query: 37 LLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 L G+ G + +++ +++ N++ A L + + Sbjct: 32 LTGLKGGSDSLFFSSLFNK-NESILIIKENESDAMLLSQSLNFY---------------N 75 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD-PDLYL 155 P Y P DT S I Q R++ ++ + +++ +V+A+ D Sbjct: 76 IPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLK 135 Query: 156 KMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVE 215 K+ +HL VG +D + L +L Y + ++GT VRG ++D+F E + +R+E Sbjct: 136 KLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEY-NNPIRIE 194 Query: 216 LFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 LFD+E+E + LF+ G+ ++ IYP + + + + Sbjct: 195 LFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFINN------------- 241 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 + + + + Y +G EN + T+FDY + Sbjct: 242 -----------NEIEDELKDNIIKRKYFAGSENLLPIFY-----KDLETIFDYFDYGYIF 285 Query: 336 VVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 D + KE + D L + ++ + Sbjct: 286 TDD----ALKLKNKFITIIDTIKENFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAINIS 341 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL---------SEIRQRAAIN 446 P +++ + + + L D + V+ + ++ + Sbjct: 342 PFITDIDIYKFHFEEGISFKSRLTDFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDL 401 Query: 447 ERVLVTTLTKRMAEDL---TEYLEEHGERVRYLHSD-----------IDTVERMEIIRDL 492 ++T ED+ E + +D DT ++ EI +D Sbjct: 402 SPTIITENDIEDTEDIKDKEENSDNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDY 461 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 E + + G ++ + I D + G R + I + Sbjct: 462 SKNENNFYIITAQSSSGFIKDDIKTIFIADWEVFGRKRKKVRKIPKV------NKNLIET 515 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + D A + + GL +K+ + I AKG Sbjct: 516 FVDLNVGDYAVHVNYGIGKYL--------------GLTRKMSN-GKEKDYITLEYAKGDK 560 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + + V +S K+ +L G ++ E+A +L +L Sbjct: 561 LYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAREDALATARELIKL 613 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 121/350 (34%), Gaps = 38/350 (10%) Query: 327 DYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALA 386 + L ++ +H+ + + + +G + AL L Sbjct: 739 ELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKHKEALKKL--------RLE 790 Query: 387 PQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRAAI 445 + +SATP L + + D + T L+ I V D +++ I + Sbjct: 791 TDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKR 850 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 +V E +++ + R H + + +I+ D ++D+LV Sbjct: 851 EGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVST 910 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAK 563 ++ G+D+P + + I +A+K G L Q GR R+ Y PS Sbjct: 911 TIIENGIDIPNANTILIDNANKLGLSE----LYQLRGRVGRSDRE---AYAYMFYPSDL- 962 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDN 622 A+ E +R + EH G + D+ G NI + G Sbjct: 963 ALTEVAYKRLEAI---SEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQ-------- 1011 Query: 623 VPMDMSPKALQQKIHELEGLMMQHA-------QNLEFEEAAQIRDQLHQL 665 V ++ + L++ +E +G + + ++ F + I D ++ Sbjct: 1012 VGYELYTQMLEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKI 1061 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 210/692 (30%), Gaps = 92/692 (13%) Query: 7 LNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60 L + P AIR + +TL+G IA++ ++ T Sbjct: 94 LEAPLHPLLKTLNQLSNWAAIRTAASAQPTERSARTLIGAVAGTHAALIADISTAVRDTT 153 Query: 61 -----MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 +++AP A L ++ + P + F P+ +T + S Sbjct: 154 AEALSLIIAPTDRQAEDLAAALRSYLPAADIALF-------------PAWETLPHERLSP 200 Query: 116 NEHIEQMRLSATKAM---LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAI 172 RL +AM ++R VV+A V A+ + +HL G + + Sbjct: 201 RSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTGIEKLEPVHLVRGEEYPFKDV 260 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 +R L + Y+R D +RG + VRG +ID+FP + +R+E F +E++ + F Sbjct: 261 VRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPP-TATTPVRLEFFGDELDEMRHFSVADQ 319 Query: 233 QIV---STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + + + T+ P + E + +A +K + Sbjct: 320 RTLSGGEELTELTLLPCRELLITPEVMSRA-ARLKADYP--------------------A 358 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 LE + Y G+E+ + L E TL + LPA +++ E + Sbjct: 359 AAAMLEKIAGGIYVEGMESLTPLL-----IESMNTLTELLPAGSMIINVEPERVRARAED 413 Query: 350 MYRGDRAR----KETLVEYGF---RLPSALDNRPLKFEEFEALAPQTIYVSATP------ 396 + + +T E L F + Q + + Sbjct: 414 LVATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITEL 473 Query: 397 --GNYELEKSGGDVVDQVV---RPTGLLDPIIEVRP---VATQVDDLLSEIRQRAAINER 448 LE + G + +Q + G+ + P V+ +LS++ Sbjct: 474 VTDADLLEDAAGALQNQNIADAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQQWT 533 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 VL T + + L + + ++E L G + V Sbjct: 534 VLALTNGRGSTDRLIDLFHSGEGAPAVPAARRTSLEADPA-GKLEHGIVE--VCEAPASA 590 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSL---IQTIGRAARNVNGKAIL-----YGDKITPS 560 G + E L +A+ G + Q R + Y Sbjct: 591 GFLVEEAKLAVFTEAELLGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHG 650 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVE 619 + + + T R N + L + G + + V Sbjct: 651 IGRFVEMTSRPVAGASPVNGV-QPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVG 709 Query: 620 PDNVPMD-MSPKALQQKIHELEGLMMQHAQNL 650 +N + M + + + A +L Sbjct: 710 GENPSLSKMGGSDWAKTKSRARKAVKEIAADL 741 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 60/411 (14%), Positives = 119/411 (28%), Gaps = 37/411 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P ++ + ++ A + + Q + E S Sbjct: 794 PMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSER------FS 847 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G R LS + + + + + + VV +H + + + Sbjct: 848 GFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSVVFKDLGLVIIDEEQRF 907 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + +SATP LE S + + T + Sbjct: 908 GVEHKEKL--------KQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATAPEERHPV 959 Query: 425 VRPVATQVD-DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + V + D + + IR+ +V +D+ + + R H + Sbjct: 960 LTFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMS 1019 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +II D FDVLV ++ GLD+ + + + A G + + + Sbjct: 1020 ESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQ-----LHQLRG 1074 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 +A Y + K +GE R K H GL + D+ G Sbjct: 1075 RVGRGRERAYAYF---LYPVDKTLGEIAHERLKAV---ATHNELGAGLQLAMKDLEIRGA 1128 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 N+ + G V D+ + + + + G + + Sbjct: 1129 GNLLGGEQSG--------HIAGVGFDLYLRLVGEAVANYRGEKEEREVETK 1171 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 100/663 (15%), Positives = 212/663 (31%), Gaps = 100/663 (15%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLED-----------GLAHQTLLGVTGSGKTFTIANVIAD 55 + + + Q +++ L + L D +QT+ V + + +A + Sbjct: 1 MVTPLPATFHQLASVQALGKVLADLPGIAALAASLRPGYQTIAPVPAAARPALLAALAYH 60 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 PT+ + + A + +++++ + V F P +D + S Sbjct: 61 RTTPTLYITLSAESALRAADDLRQWLGSDQVWLF-------------PPADALPYEQMSP 107 Query: 116 NEHIEQMRLSATKAMLERR-DVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + RL+ + + V+V SV A+ P + L GM + + Sbjct: 108 GRDVLARRLAVLRGLQTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETV 167 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L + Y R + G RG ++D++P D++ LR+E FD+E++ L FDP T + Sbjct: 168 VTLLDNGYQRVAMVEEPGELSRRGAILDVWPPG-DELPLRIEWFDDEIDSLRRFDPATQR 226 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + R I P R + + RR+V E Sbjct: 227 SEQRLERADIGPPHEIPFWRRDEALRRIDALDMSQLRREVRDEW-------------AVA 273 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F + TL DYLP ++ + E H+ + Sbjct: 274 REQLAGGQRFEGRAFYAPFFY-----DQTATLLDYLPPQSMVALAEGHLLAQHADEIDVQ 328 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 ++ L+ G LP L++ E + ++ S + D + Sbjct: 329 AAGYRDQLLALGE-LPPDFPRPYLRWSELHLKESAKLV--------VVDLSHNEYPDALP 379 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT-EYLEEHGER 472 + + P+ Q+ L+ + ++ E V+ T ++L E L + Sbjct: 380 PLSFGVPPL-----YGGQLRRLIDTVVEQVRGGELVVAVTAQAARLQELVGERLAQETVS 434 Query: 473 VRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R+ +H L G + ++ L + D++ G + Sbjct: 435 GRFVPIHGG--------------------------LEAGFTLADLHLTLLTDSEIFGVRQ 468 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 R L + + A I + + T + Sbjct: 469 R-RPLAERRRKTGTTDR--AAFLRTLKPGDYVVHIEHGIAIFDGMIRR------TVSEVE 519 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHA 647 ++ + + G++ + + + P + + ++ ++ + A Sbjct: 520 REYLVLRYAGEDKIYVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLA 579 Query: 648 QNL 650 + L Sbjct: 580 EEL 582 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 128/408 (31%), Gaps = 35/408 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P V + ++ A + + Q + M + Sbjct: 634 TPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFDTFRKRMAA--FP 691 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E SRF + + L + ++ +H + + Sbjct: 692 VTVEMLSRF----RSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQR 747 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + + ++ATP L + + D V T D I Sbjct: 748 FGVRHKERL--------KLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIP 799 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 V D L+ E IR+ +V V + + E L R H + Sbjct: 800 IKTYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQL 859 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ D G +DVLV ++ GLD+P + + I DA G + L Q G Sbjct: 860 AERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQ----LYQLRG 915 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R G Y + + A+ + R R + + E G G + D+ G Sbjct: 916 RVGR---GATRAYAYLL-YNAARVMTNDARLRLEAIQEATELG---AGFRIAMRDLEIRG 968 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + V D+ + L+Q + +L+ + + A+ Sbjct: 969 AGNLLGAEQSG-------HIAAVGFDLYSRLLEQAVRKLKQDVDELAE 1009 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 112/662 (16%), Positives = 216/662 (32%), Gaps = 96/662 (14%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNK 67 + I+ L+ L G L S A + A++ T+++ P Sbjct: 3 TKPLIELLSKSNQIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRP 62 Query: 68 TLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKD-ASVNEHIEQMRLSA 126 A + + + + + P+ D + AS + RLSA Sbjct: 63 EEAQNVADSLSTYLWD------------PKRVLLWPAHDDLPYERIASPTQDSPFRRLSA 110 Query: 127 TKAMLE--RRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 + +L R +++VASV +I + + G +D A+ R+AEL Y+ Sbjct: 111 LERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDIIALANRVAELGYSP 170 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 + G F RG + DI+ SD + +R+ELF +EVE + LFDP T + I F+I Sbjct: 171 VASVEEVGQFSRRGGIFDIWTPSSD-LPIRLELFGDEVESIRLFDPETQRSTREIESFSI 229 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 E + + L + + +T + LE ++ Sbjct: 230 ISPYEIPV-------------AEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLP 276 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + + + L DYL ++ D + R +E Sbjct: 277 AIHSIIAPYF-----PSGLGNLLDYLSEGTIVFTDLPDRLALTASTL-RSHIEGMRLEME 330 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +PS L + ++ E + A P + + G++ P Sbjct: 331 QSGDIPSNLLSPVFEWSYIEDR------LKALPKIEPVNSAEGNLKFY---------PAP 375 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 ++R D++ +R V + T R E + +EH + Sbjct: 376 QIRSST---IDIVDNLRSWIDEGRTVFIVT---RHHERIRHVAKEHNLPLA--------- 420 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + D++ G+ ++ +++G +++LV + D + G+ R A Sbjct: 421 ----LDEDVKQGQMFIV--PGSIQDGWICDDINLVVLSDTELWGY---------REPRRA 465 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 R+ P A + + +HG+ N A + + Sbjct: 466 RS-------------PRKAPQRVFLADLQPGSYVVHVDHGVAKYVGNVMRGSSGAEREYL 512 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 A G P+ + D + + + + L + + A Q+ +L Sbjct: 513 VLEYAGGDRLYVPVDQIDRISPYIG--GGEPALSRLGTADWARTKRRAKKAADQLAKELL 570 Query: 664 QL 665 QL Sbjct: 571 QL 572 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 123/400 (30%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + N G Sbjct: 622 PMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFRSRFNPFGIRV 681 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R R + + L + +V +H + + + + Sbjct: 682 EMLSRLRTKKERDQ------VLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDEEQRF 735 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + ++ATP L+ + V D V T D + Sbjct: 736 GVKHKETLKQI--------RTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPV 787 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + + D ++ + I + +V + + L+E R H + Sbjct: 788 YTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMP 847 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +++ D +DVLV ++ GLD+P + + + DA G + L Q GR Sbjct: 848 EQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQ----LYQLRGR 903 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ N Y + A+ + ++R E E G + D+ G Sbjct: 904 VGRSSNR---AYAYLMYRPDARMTEDAQKRLEAI----SEATQLGAGFRVAMKDLEIRGA 956 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N + G + +++ + +++ + EL Sbjct: 957 GNFLGPEQSG--------HVYAIGLELYTQMIERAVQELR 988 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 104/617 (16%), Positives = 205/617 (33%), Gaps = 73/617 (11%) Query: 55 DLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 R ++++A A +++ ++ + EN P +DT + S Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGEN--------------VMLFPPTDTLPYEHMS 99 Query: 115 VNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAIL 173 + I RL+ + + VVASV A+ P+ + L G D R +L Sbjct: 100 ADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL 159 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y A Q G RG +IDIFP SD +R+E +D+++E L ++DP++ + Sbjct: 160 AHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDR-PIRLEFWDDQLESLRIYDPISQR 218 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + I P R K + + + + Sbjct: 219 SDKRVRQIQISPAHEIPFWRRT-------------EAIKRIEQLQIASLRREVQHEWATA 265 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 E + G Y+ F L+ +LPA ++++ E H Q + Sbjct: 266 REHLETGQRFEGRAFYAPFFRTPHEAAEAG-LWQHLPASAIILLSEEHELNAQGIELQSH 324 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + T +E LP + + + ++ + +++ V + Sbjct: 325 ADLVRSTQIENNE-LPPDFPFPLIAWTFIRRSIQRWSCLNLSNQPIADDQNDSFVHE--- 380 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ + Q D L ++R+R ERV++ + A L E +H Sbjct: 381 -----INTFSQAASYGGQTDRLFEDLRERLVGGERVVLISP---QASRLRELASQHNL-- 430 Query: 474 RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSER 533 L + D + + + G +++ L G + L + D++ G+ + R Sbjct: 431 -ALIGEEDGPDVDD--PPFQSGT--IIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQ--R 483 Query: 534 SLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + T R R + + I EHGI ++ Sbjct: 484 RALSTRARKQRTESDRTAFLQSLKVGDYVVHI---------------EHGIAQYEGLSRI 528 Query: 594 VDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 A + + A G P+ + D V + + + L + A+ Sbjct: 529 EASGAEREFLVLRYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKR---- 584 Query: 654 EAAQIRDQLHQLRELFI 670 ++R + +L + Sbjct: 585 ---KVRADVEELATELL 598 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 137/433 (31%), Gaps = 37/433 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + M + Sbjct: 650 PMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRRMQ--MFPV 707 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SRF ++ + + + +V +H + + + + Sbjct: 708 RIEMLSRF----RSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRF 763 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + + ++ATP + + + D V T D + Sbjct: 764 GVKDKERLKKLRHEID--------VLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPI 815 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ + I + N + + + L++ R H + Sbjct: 816 KTYVQPYNEMLVRDAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMP 875 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 ++I G FDV V ++ G+D+P + + I DA G + L Q GR Sbjct: 876 EKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQ----LYQLRGR 931 Query: 542 AARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R+ G A ++ + KA+GE ++R + + E G G + D+ G Sbjct: 932 VGRSTQRGYAYMF-----YNPTKAMGEEAQKRLEAIQEATELG---AGFRIAMRDLEIRG 983 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660 + + D+ + L Q + + + Q E+ AQ Sbjct: 984 TGNLLGAEQSGN-------ITTIGFDLYSRLLSQAVERVREERKRGQQQKSGEQKAQRAR 1036 Query: 661 QLHQLRELFIAAS 673 + LR + ++ Sbjct: 1037 AVEALRRAAVVSA 1049 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 214/664 (32%), Gaps = 122/664 (18%) Query: 11 FKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 + ++++++ L+ G Q + G++G+ +F +A + +++ P++ A Sbjct: 4 LLKLFCEAPSVQKIKTALQAG-KPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETA 61 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 L E+K + E + P + + + RL + A+ Sbjct: 62 LTLAAELKLLWGEEVFVFLPREIFGLGPSL--------------PSAFVPRQRLLSLAAL 107 Query: 131 LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 R+ VVV + + + GL P+ + L G + + +RL E Y R Sbjct: 108 ARRQGVVVATAPALLQGLAPPENFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVP 167 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG ++D FP S + +RVE +E+ R++ FDP + + + + + P Sbjct: 168 GQFARRGGIVDFFPP-SSPLPVRVEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVP 226 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 P E++ E + S E+ Sbjct: 227 NPCTGR--------------------------------------EILPESWFLSQGEDSF 248 Query: 311 RF--LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 + + +L YLP L + E+ ++ Sbjct: 249 PYPEVLLPCLFPRVVSLLAYLPPGAPLALVEAQAAEKAAREAEERQMEICREMIAKKKLP 308 Query: 369 PSALDNR--PLKFEEFEALAPQTIYVSATPGN--YELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + +L P + +S P L + + Sbjct: 309 EESRKAFLSWSEVAKELSLYPHRLRLSFLPEKNGEVLGLA-----------------VRT 351 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + L EI++ + RV++ + + + E L+E+G R Sbjct: 352 APSFLGKFAQLAEEIQEFM-RHYRVILLVDKEERVKGVVEGLKEYGIIPRLTPDSAPV-- 408 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 G V+ G LREG PE V + A+ G ++ Sbjct: 409 ----------GTVTVVKG-GNLREGFIFPEAQFVLLTPAEIFGRRQAT------------ 445 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 +P+ + E + + + EHGI G+ + +V + G Sbjct: 446 ------------FSPTPTPVVEEEREFKPGEYVVHPEHGI---GIYRGLVQLSVEGVTRE 490 Query: 605 KTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + G+ R + D + + + + + ++ L G + + + A + + Sbjct: 491 YALIQYAGEDRLYLPADQLGVLERYVGGEGAKPRLSRLGGGEWKRVRARVKQAATDVARE 550 Query: 662 LHQL 665 L +L Sbjct: 551 LLRL 554 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 128/431 (29%), Gaps = 39/431 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + + Sbjct: 604 PMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTTILAQQHYRTF------SSRFA 657 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +L + L A + +V +H + + + Sbjct: 658 PYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDVQFRDLGLVIIDEEQRF 717 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G L + ++ATP L S + D T D + Sbjct: 718 GVLQKEKLKLL--------RKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTTPPPDRLPV 769 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 E V + IR+ A +V ++ +++ R Y H + Sbjct: 770 ETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMP 829 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 I+ D ++DVLV ++ GLD+ V+ + + DAD+ G + L Q GR Sbjct: 830 EAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQ----LYQLRGR 885 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + K I E + R + K G G D+ G Sbjct: 886 VGRTNR---LAYAYFL-YRRDKIINEAAKARLRAIKDFTSLG---AGFKVAKRDLEIRGA 938 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN--LEFEEAAQI 658 N+ T+ G V +++ + LQ+ I EL+G + + +E +A I Sbjct: 939 GNLLGTEQHG--------HIQAVGLELYCRLLQEAIKELKGEEVVPPVDPVIELTVSAYI 990 Query: 659 RDQLHQLRELF 669 D + Sbjct: 991 PDDYVPFDQKL 1001 >UniRef50_Q3DUF1 Transcription-repair coupling factor n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DUF1_STRAG Length = 451 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 170/475 (35%), Gaps = 47/475 (9%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQ 72 Q + +R GL Q ++G +G+ K IA+ L + MV+ +T + + Sbjct: 5 ELFSQNKVVRTWHSGLVTNSR-QLVMGFSGASKAIAIASAYEKLSKKIMVVTATQTDSDK 63 Query: 73 LYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE 132 L ++ E+ V F + D + + RLSA + + + Sbjct: 64 LSSDISSLIGEDNVYQFF-------------ADDVPAAEFIFSSLDKSISRLSALRFLKD 110 Query: 133 RR-DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 + V++ S+S + L P+++ K +G + + L L Y + Q F Sbjct: 111 PEKNGVLITSISGLRLLLPNPEVFSKSQYKFEIGQECYLDKLCKNLVNLGYQKVSQVFSP 170 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G F RG+++DIF + + R+E F +E++ + FD T + + + I P + Sbjct: 171 GEFSQRGDILDIFEM-TQEYPYRLEFFGDEIDGIRQFDIDTQKSLKQLESVQISPADDII 229 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 +A ++++ L +V L S I + Sbjct: 230 LQDADFERAKKKLEGYLVTASEVQR------------TYLSEVLSTTENHFKHSDIRRFL 277 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 + G + DY+P L VD+ + + + + ++ G S Sbjct: 278 SIFYEKEWG-----ILDYIPEGTPLFVDDFQKIVDRNAKLDLEIASLLTEDLQQGKS-HS 331 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 +L+ +++ P T + + G L+ Q ++ Sbjct: 332 SLNYFSDPYKQLRQYQPATFFSNFHKGLGNLKFDKLHHFTQYG-----------MQEFFN 380 Query: 431 QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVE 484 Q L+ EI + VL+ +++ L E L+E+G + +DI E Sbjct: 381 QFPLLVDEINRYKKSGATVLLQVDSQKGLNLLQENLKEYGLDLIISDKNDIVQKE 435 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 225 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 106/635 (16%), Positives = 195/635 (30%), Gaps = 70/635 (11%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L L + GV G + + + L RP + + P+ A QL ++ F Sbjct: 1 MDDLIRSLGQCKEPLDIYGVRGGAVAWLVGRL-GGLARPLLCVCPDDEQARQLATDLALF 59 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER-RDVVVV 139 P + P + + RL+A A+ + ++V Sbjct: 60 SD--------------LPVVHYPDLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMV 105 Query: 140 ASVSAIY-GLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 A+ A+ P+ + + G D + RLA Y R + G + +RG Sbjct: 106 AAGRALSARTLPPERLQALAELVIRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGG 165 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 +IDIFP + LR++ F + VE + FDP++ + V + + P + + P Sbjct: 166 IIDIFPPG-QEYPLRLDFFGDTVEEIRRFDPISQRSVGELAEAILLPASDCLYPAADSPA 224 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ L R + + + Q ++ E + + +G + + L Sbjct: 225 -----QQALLERHRQWAASLQWDR-----QPSRQLEECLRQHRPFAGDQFFLPLLEPAAL 274 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 YLPA+ L++ + + Q ++R A + + D L Sbjct: 275 SP-----LAYLPANTLIIQVDHPRLL-QNLALHRERIASNYQELTATAQPALPPDELFLS 328 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 E+ Q P + L + R + L + Sbjct: 329 AEQLHGHFEQAAGARIFPLAPGEANGQRVFQIEAGNHVLLKQQLDLKRREEGLLAPLAQQ 388 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 I+Q ERVL+ T R A + E L HG D I++ Sbjct: 389 IKQWRQQGERVLLACRTPRHAAKMAELLAGHG----VTDGDHC-----RILKQ------- 432 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKIT 558 L G D+P + + + G R E AA A Sbjct: 433 ------PLSSGFDLPSEGEHWLSEGELFGDRRLES--------AAAKSRAPATKIVSHDE 478 Query: 559 PSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIV 618 + RR Y I G+ ++I G + Sbjct: 479 INPG---DPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNSVGKYK 535 Query: 619 EPDNVPM---DMSPKALQQKIHELEGLMMQHAQNL 650 + + + +++ + Q A++L Sbjct: 536 GLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDL 570 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 110/308 (35%), Gaps = 22/308 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + ++ATP L+ S V D V + + Sbjct: 733 EHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTFI 792 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVER 485 A D ++ E I + + +V + ++ ++ H + + Sbjct: 793 ARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQL 852 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 EI+ E +VLV ++ GLD+P+ + + I AD+ G + Q GR R+ Sbjct: 853 EEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLAE----IYQLRGRVGRS 908 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y + P++ GE R + YNE G G + D+ G Sbjct: 909 RQQ---AYAYLLVPALDDLAGEARHRLQALMDYNELGG----GFKLALSDLQIRGGGNIL 961 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ-NLEFEEAAQIRDQLHQ 664 +++ V DM LQ+ + +L+ + + + + + E A++ ++ Sbjct: 962 GESQSGN-------IAAVGYDMYLDLLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEP 1014 Query: 665 LRELFIAA 672 +L IAA Sbjct: 1015 EIKLAIAA 1022 Score = 42.5 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/258 (12%), Positives = 80/258 (31%), Gaps = 17/258 (6%) Query: 415 PTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHG 470 + +D ++ + + + + +V V T ++ A E L Sbjct: 620 SSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAVLVPTTVLAEQHAATFRERLAGFP 679 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFL 529 R+ L+ + E+ ++ DL + D+++G + LL + + L+ + + + G Sbjct: 680 VRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEEHRFGVS 739 Query: 530 RSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 E+ + +G +L + R + Sbjct: 740 HKEK--------IKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVISSPPRLRRAVKTF 791 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK--IHELEGLMMQHA 647 + D++ + + G+ + + L + G M A Sbjct: 792 IARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMP--A 849 Query: 648 QNLEFEEAAQIRDQLHQL 665 + LE +R +++ L Sbjct: 850 RQLEEIMVRFVRREINVL 867 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 225 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 186/612 (30%), Gaps = 79/612 (12%) Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A + AA+L + F P V F P+ D S N I Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILF-------------PAWDCLPYDRVSPNGDIVAR 91 Query: 123 RLSATKAMLE----RRDVVVVASVSAIYGLGDPDL-YLKMMLHLTVGMIIDQRAILRRLA 177 R+ A +LE R +++V +V+A P L + VG I+ + R LA Sbjct: 92 RIDALTRLLEPAAKDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLA 151 Query: 178 ELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST 237 Y + + G F VRG ++D+FP + + LR++LF ++++ + FDP+T Sbjct: 152 NNGYTKAQTVREPGEFAVRGGIVDLFPPGTAE-PLRLDLFGDDLDGVRAFDPMTQLTTEK 210 Query: 238 IPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMM 297 F + P + I + +E A E + Sbjct: 211 RDGFVLKPMSEVFLDEMSISRFRTGYRELFGA-----------------VTGDDPLYEAV 253 Query: 298 NELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 + +G+E++ TLFDY+P + + Q R Sbjct: 254 SAGRKYAGMEHWLPLFHSGL-----ETLFDYMPDAPVTLDPHVEEARDQRLEQVRDFFEA 308 Query: 358 KETLVEYGF------RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + TL E P L E ++ TP S D+ D Sbjct: 309 RRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHLAVRPVAQLTPFAAAEAGSNPDLTDA 368 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 R G V+ D L + A RV+V + + L L+EHG Sbjct: 369 GGRK-GRDFADARVQSGVNVYDVLREHVGALLADGRRVVVAGYSTGARDRLRSVLKEHGI 427 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL----LREGLDMPEVSLVAILDADKEG 527 ER++ + E L L G P L I + D G Sbjct: 428 ------------ERVKAVESWAEVEGLPRTTTALVVLALDHGFTAPG--LAVITEQDILG 473 Query: 528 FLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQ 587 L++ GR R + I R Y+ + Sbjct: 474 -----DRLVRAGGRKKRRAANFIAEASGLNPGDLVVHIDHGIGR------YDGLETLDVG 522 Query: 588 GLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQ 645 G + ++ G + + D+ + Q + ++ + Sbjct: 523 GAPHDCLRLVYEGGDKLYVPVENIEVLSRYGSEDSAGQLDRLGGAGWQSRKARVKKRLKD 582 Query: 646 HAQNLEFEEAAQ 657 A L A + Sbjct: 583 MAAALLRIAAER 594 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 102/316 (32%), Gaps = 31/316 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + +V +H + + R + +G + L Sbjct: 718 LADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQKERLKELRADI--------H 769 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L+ + V + + T +D + V ++ E I + Sbjct: 770 VLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGG 829 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + E + LEE +V H + + E++ ++DVL+ N+ Sbjct: 830 QSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFDEHKYDVLLATNI 889 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKA 564 + GLD+P + + + AD G + L Q GR R G A +T Sbjct: 890 IESGLDIPSANTLVVHRADLFGLAQ----LYQVRGRVGRAKVRGYAY-----LTYQPRTV 940 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 + T ++R E G D+ G + + V Sbjct: 941 LSATAQQRLHVI---ETLDSLGAGFQLASHDMDIRGAGNLLGEEQSG-------HIREVG 990 Query: 625 MDMSPKALQQKIHELE 640 +++ + L++ + + Sbjct: 991 VELYQQMLEEAVADAR 1006 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 225 bits (572), Expect = 7e-57, Method: Composition-based stats. Identities = 92/667 (13%), Positives = 203/667 (30%), Gaps = 103/667 (15%) Query: 11 FKPSGDQPEAIRRLEEGL--EDGLAHQTLLGVTGSGKTFT--IANVIADLQRPTMVLAPN 66 P Q + + L + L+G+ ++ +++ + + ++A N Sbjct: 3 LFPKL-QEKLLETLSPFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLL-SDKTLWIIAEN 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + + F S++ ++P + + S + I R+ A Sbjct: 61 IEKSHNRMSSLLAF---------QSFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHA 111 Query: 127 TKAMLERRDVVVVASVSAIYGL-GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + + + VVV + A+ P L ++ L+ G I++ A+ L L + R Sbjct: 112 LNLLAQGKVDVVVTTWPAVVRKTLPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVL 171 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++ D +R+E D+ + + FD + ++ + R I P Sbjct: 172 QVSAPGEFAVRGAILDLYSPAHQD-PVRLEWDDDILASIRSFDINNQKSLAKLSRVEILP 230 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + ++ P + L+ G Sbjct: 231 GSEWIPPTGNVKNG-----------------------------ALSDWLKDNPVTSLVPG 261 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +E + + DY +L+++E + + R E L + Sbjct: 262 VERFIPSIYEDAQSP-----LDY-GRKPVLLIEEPSIYRQKKKEWEERIREGWEALTDSD 315 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 L + + L E + +Y + + D + +E Sbjct: 316 KVLLPSPEKAFLFEEAESPQLIEKLYPTI------------YLSDFSDQEDLPFSSPVE- 362 Query: 426 RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 Q++D +E +VL T+ + E L G D ER Sbjct: 363 --SLLQIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPFFPASGLQDIEER 420 Query: 486 MEIIRDLRLGEFDVLVGINL--LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + R +V L + +G +P +++ + + F + I Sbjct: 421 EPLNRS--------VVWTILGDVEKGFYIPSDNILVLS--ENFLFRKRPEPRIHR----- 465 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 A I + E + + +HGI K+++ G+ Sbjct: 466 ------AFATATSIYRKDRPPL------NEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFF 513 Query: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 P+ D + P+ + + G + ++R ++ Sbjct: 514 VVEYRDLEKLYVPVDHADLLQPYRGPEGSTPTLDRIGGQTWNRTRQ-------KVRKEIE 566 Query: 664 QLRELFI 670 ++ + + Sbjct: 567 KISQDLV 573 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 31/282 (10%) Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT-QVDDLLSEIRQRA 443 + + +SATP L+ S + T + T + I + Sbjct: 751 TSVDVLTLSATPIPRTLQMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDREL 810 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 A + +V + + YL + + H ++ E++ + +LV Sbjct: 811 ARDGQVFFIHNRVQTISRMVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILV 870 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 ++ GLD+P + + + AD G L Q GR R+ Y + PS Sbjct: 871 STAIVESGLDIPAANTIIVNRADMFGISE----LYQIRGRVGRSGQQ---AYAYFLIPSE 923 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +T R+R K + N G G + D+ G + Sbjct: 924 SG-LTDTARKRLKTLQDNTSLG---SGYQIAMRDMEIRGAGSLLGHQQ-------TGHIA 972 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663 V +D+ + +++ I +E E R+++ Sbjct: 973 LVGLDLYLEMVEEAIQ----------SRIEPEAVPLAREEVR 1004 Score = 43.6 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 10/142 (7%) Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLT--- 455 + E + V + + PT +D +I + + + + A +V + T Sbjct: 607 PDQEDAWRAVCEDMEAPT-PMDRLILGDVGFGKTEIAMRAAFKAVADGYQVALLVPTTLL 665 Query: 456 -KRMAEDLTEYLEEHGERVRYLHSDI--DTVERMEIIRDLRLGEFDVLVGIN-LLREGLD 511 K+ E + G VR H E + L LGE D+L+G L+ + Sbjct: 666 AKQHYESFLDRFS--GFPVRICHISRMVSQAEIRATRKKLSLGEIDILIGTTALISKETS 723 Query: 512 MPEVSLVAILDADKEGFLRSER 533 + L+ I + + G + E+ Sbjct: 724 FRNLGLLIIDEEQRFGVGQKEK 745 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 112/653 (17%), Positives = 207/653 (31%), Gaps = 77/653 (11%) Query: 13 PSGDQPEAIRRLEEGLEDGL--AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLA 70 P Q R L + + + G S + +A +IA++ P +++ A Sbjct: 8 PLLHQEPDHRALLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSA 67 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 ++ + E+ P++ P S+T + V+ + +R+ + Sbjct: 68 EEVTAGLAEYLPDDR------------DPTLWPVSETLPYELLPVDRSVSALRVELLARL 115 Query: 131 LERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R V +VA A+ L P HL VG + A + L + Y Sbjct: 116 ARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQA 175 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G RG +ID+FP D ALR+ELF +E++ L L DP T + V + + I P Sbjct: 176 PGQVGRRGGIIDVFPPVGD-HALRIELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEV 234 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + + + R +V E + L+ Q T Sbjct: 235 SLAQRDAALSALRQMDTTTLRPEVAEEWERSLQRLERGQVT------------------V 276 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L P +L DYL L+V ++ +E LP Sbjct: 277 GLELLAPLLLPEPASLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEELRDALEDAGELP 336 Query: 370 SALDNRPLKFEEFEALAP--QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 S + L ++ + I P ++ + + P E+ Sbjct: 337 SGMPRPYLDWQAVADRLSGARQIAFGPVPTHWSPPVA--------IIPDARPVYGRELPA 388 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 A ++D L++++R+R A V++ + + LTE LEEH R Sbjct: 389 YAGRLDALVADVRERLADGWAVILASE---QSGRLTEVLEEHDIFPRTRKRPAGNGRIAP 445 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 G +V+ + L G + + ++ + D + G+ R Sbjct: 446 PPEPPTPGTVEVV--YSRLNGGWEHGGIKVLLLTDREMFGYRRVAAP------------- 490 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 A+ Q + EHGI G + + + Sbjct: 491 --------APRRRAARRPPLLPSLTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEY 542 Query: 608 AKGRGKSRPIVEPDNVPMDMSP-------KALQQKIHELEGLMMQHAQNLEFE 653 A P+ + D + + + ++ + + + + FE Sbjct: 543 AANDRLYLPVDQIDRITPYEGAGIEPKLTRLGSPEWARVKQRVRRAVREMAFE 595 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/401 (14%), Positives = 118/401 (29%), Gaps = 37/401 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + Sbjct: 649 PMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRI 708 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + + R + + L + V+ +H + + + + + Sbjct: 709 EMLSRLR------SRKEQTQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRF 762 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + ++ATP L + + D V T + Sbjct: 763 GVAHKEHFKRL--------RTNVDVLTMTATPIPRTLYMALSGIRDLSVITTPPQERTPI 814 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V D L+ E I + + +V + + E LE+ R H +D Sbjct: 815 RTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVLERLEKLVPEARFGVGHGQMD 874 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ EFDVLV ++ G+D+P V+ + I A + G + L Q GR Sbjct: 875 EDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQ----LYQLRGR 930 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + + R + + E G G + D+ G Sbjct: 931 VGRSHHR---AYAYVL-YDANVPLSAEAVARLEAIQEATELG---AGFQIALRDLEIRGA 983 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 N+ + G V +D+ + L + E++ Sbjct: 984 GNVLGPEQSG--------HVAAVGLDLYTRMLATAVEEIKQ 1016 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 88/526 (16%), Positives = 170/526 (32%), Gaps = 69/526 (13%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 + +L+ L G L ++ S + +A + + RP +++ + A + + Sbjct: 14 PELEKLKRELSCG--SDATLSLSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLA 71 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV 138 + +AV + + D + DA+ ++ I R A + V+V Sbjct: 72 AWLGNDAVLRYPNRKD-------------YPWSDATPDDAIIGARCRAIAKLSAGEKVIV 118 Query: 139 VASVSAIYGLGDP---DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 VAS A+ P +L VG + + L + YA + GTF + Sbjct: 119 VASAHALMRRVPPVGSGYFLPATFT--VGDDVPFEDVASLLVGMGYADTGEVDAPGTFHI 176 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 G+ +DIFPA++ +R+E F +E++R+ TGQ + I T+ P +E Sbjct: 177 HGDTVDIFPAQA-TSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEA 235 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 I +A E + DLE++ +E Y L G Sbjct: 236 IRRAEEALYTRAQE-----------------NSAIAADLELIQRGAQAPALERYLPVLYG 278 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + +++ ++ L+V+ E + + LD Sbjct: 279 G-----TASPLEHISSETLVVLAEPRSLFDDCQRAFDEISSSA-------AASKVKLDGL 326 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + + + Q + S+ S VV + A L Sbjct: 327 YTDPKAMDFGSQQRLSFSSLLRTGAAVTSELSVVQPSI---------------AGSDTKL 371 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME--IIRDLR 493 L +RQ + V+ + E L + E + + L+ Sbjct: 372 LGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENEPDQNGVYVPLK 431 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 G V + G+ +P +L + +D + + I Sbjct: 432 RGR--VTFTDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKRI 475 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 104/326 (31%), Gaps = 29/326 (8%) Query: 326 FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 + + V+ +H + + + +G + L N + + Sbjct: 703 LEGFADGTIDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVD----- 757 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAA 444 + +SATP ++ + V D + T ++V D + + IR Sbjct: 758 ---VLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELE 814 Query: 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVG 502 +V + ++ +EE R H + E ++ + E DVLV Sbjct: 815 REGQVYYVSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVA 874 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 ++ G+D + + I D+ + G + L Q GR R G+ Y + P+ Sbjct: 875 TTIIESGIDNSHTNTLIIEDSQRLGLAQ----LYQLKGRVGR---GRQQAYAYFMFPAEL 927 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 E R E G+ + D+ G + S + Sbjct: 928 PLTEEATERLTAI----NEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLS-------S 976 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQ 648 V D+ + L + + E G + Q Sbjct: 977 VGFDLFTQMLGEAVAEARGESAELEQ 1002 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 72/505 (14%), Positives = 162/505 (32%), Gaps = 68/505 (13%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS + A+ Q +V+A + Y +K + + + F + Sbjct: 24 LYGSADALALIE-FANQQHIILVIANDIVHFDNFYKSLKFYNTDLEILKFDN-------- 74 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLY-LKMM 158 + S + I RL + + +V+ ++ +++ P + K Sbjct: 75 -----WEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSHLCPLEFSKKYS 129 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L++ + I+ +L ++ Y + G F +R +ID++P + A R+ LF+ Sbjct: 130 LNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT-KTAYRINLFN 188 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 ++VE + F+ T + + IP T+ P + T I K+ Sbjct: 189 QKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKK------------- 235 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL-VV 337 + F ++E GIE Y TLFDYL + ++ Sbjct: 236 -------IFNDNGFIYTEVSEGRLPGGIEFYLPLF-----FHTTNTLFDYLADNTIIATS 283 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 E + + R + ++ + Q I ++ Sbjct: 284 KEFSNLVDKTYNEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSKLE 343 Query: 398 NYELEKS-GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N + + + V +P+ ++ + + N+++L+ + Sbjct: 344 NKKQHFNFNSSLPPPVRIELQTNNPL-------SKFSTFVKRFTNK--QNKKILIVCESL 394 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR--LGEFDVLVGINLLREGLDMPE 514 L++ L H + + + ++ + +L+ GL + Sbjct: 395 DRQNVLSDLLINHNLNTYSV----------KSWHEFTTSSKSLNI-IHEDLIH-GLLIHN 442 Query: 515 VSLVAILDADKEGFLRSERSLIQTI 539 + I + D G ++ T Sbjct: 443 I--AIITEEDLFGQEVVQQQRRHTK 465 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 29/330 (8%) Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 LS + + + L + ++ +H I + +G + AL Sbjct: 685 LSRFQTPKEQKIIIEQLKQGTIDIIIGTHKIIQNNIKYKNLSLIIIDEEHRFGVKQKEAL 744 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQ 431 + ++ATP L + G + + + T I+ Sbjct: 745 KKL--------RGQSDILTMTATPIPRTLNMALGSLRELSIIATPPAKRSTIQTFVQEWH 796 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER--VRYLHSDIDTVERMEII 489 D++ I + +V + +++ E L++ + +R H I T E +I+ Sbjct: 797 NDNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQIIPKLQIRIAHGKIPTRELEQIM 856 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK 549 D F +LV ++ G+D+P + + I +A G + L Q GR R+ + Sbjct: 857 SDFYHARFHILVCTTIIETGIDIPNANTIIINNAQNFGLAQ----LHQLRGRVGRSHHR- 911 Query: 550 AILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAK 609 Y I S ++ +T + R K E G G D+ G + Sbjct: 912 --AYAYLIVKSHL-SLSKTAKDRLDVIKSLTELG---SGFMLANHDLEIRGAGDLLGDNQ 965 Query: 610 GRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 + + ++ L++ I + Sbjct: 966 SG-------QISEIGFNLYHDLLKRTIDAV 988 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 91/529 (17%), Positives = 178/529 (33%), Gaps = 56/529 (10%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 I R+ L+ G L ++ S + F +A RP +++ + A + Sbjct: 12 TSREIHRIWNELDQGK--DCTLNISQSARPFIVAACACAQARPILLVVSGEDAADRAARI 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + + V + D D S + + R A + + + Sbjct: 70 LAGWLGPDVVFRYPDRAD-------------LPWSDKSASAEVCGTRAEALFHLAQPQRC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQY---ARNDQAFQRG 191 VVVAS A+ P + + + +G +D A+ R+L Y + + G Sbjct: 117 VVVASARALLRRLPPKTSSFAQQQ-KICIGDELDIYALARQLVLWGYVSTTVVKEVREPG 175 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F V G+ +D+F + +R+ F +EV+ + P TGQ +S+ + Y Sbjct: 176 YFCVHGDSVDVFSP-CEQAPVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELEL 234 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 E I A ++ ++ T+ L+ + E Y + ++ Y Sbjct: 235 SPETIQCAKNKLYDKAQEDLD-----------------TERVLDQIEESVYTNELDAYLP 277 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 +L ++ DY+ L+V+ E Y + + Sbjct: 278 YLY-----PSTASVIDYMHPSALVVLAEPRALFDDCQRAYDEL-------MHASTEKRVS 325 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ 431 LD E + Q + +S + + S V +Q I +R + Sbjct: 326 LDGLYTSPVELDFGKQQRLSLS-SLARQGMRASNHVVTEQCDIAGSASKMIGRIRELLAN 384 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH-SDIDTVERMEIIR 490 ++ + R A L T ED +E+ EH + H S+ + + + Sbjct: 385 NSAVVFSVPDRGARRALQLSFTDENISFEDASEHASEHASKRAPEHESEHNQDLEAQNLP 444 Query: 491 DLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 R V+ + + G+ +P L +D L +++ Q I Sbjct: 445 LPRN---KVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQKI 490 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 65/404 (16%), Positives = 121/404 (29%), Gaps = 35/404 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ + Q + E Sbjct: 642 TPMDRLLCGDVGFGKTEVALRAAFKCCQDHKQVMVLCPTTILAQQHFETFYER------F 695 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + E R LS + + V+ +H + + Sbjct: 696 TPFEVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLIIIDEEQR 755 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + L N + + + +SATP ++ + V D + + Sbjct: 756 FGVQHKEQLKNIREQVD--------VLTLSATPIPRTMQMAMSGVRDMSLILSAPAGRKP 807 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDI 480 V DL+S+ IR A +V + + +D E + R H + Sbjct: 808 VRVHVGEWDSDLISDAIRLELARKGQVYYVSNRVKTIDDALERVHACAPEARVGVAHGQM 867 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + E++ E DVLV ++ G+D P + + I D+ + G + L Q G Sbjct: 868 SPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQ----LYQLKG 923 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R G+ Y + P + + E RRR + EH G+ + D+ G Sbjct: 924 RVGR---GRVQAYAYFMFP-PTEPLTEEARRRLEAI---YEHQELGSGMRIAMKDLEIRG 976 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMM 644 + S V D+ + L + E +G Sbjct: 977 AGSLMGAEQHGNLS-------GVGFDLFTQMLSDAVREAKGETQ 1013 >UniRef50_Q09E47 Transcription-repair coupling factor n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q09E47_STIAU Length = 494 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 142/392 (36%), Gaps = 48/392 (12%) Query: 1 MSKPFK-------LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI 53 M PF L A P+GD RL E L+ G +T G+ G+ + +A + Sbjct: 38 MDTPFSQTAGSEALRGAVPPTGD---PFARLLERLQPGHRART-QGLHGAARGHVLARLS 93 Query: 54 ADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDA 113 L+ P + +A ++ A L G++ F N +P+ + + Sbjct: 94 RTLKAPLVCVAVDEEAADALAGDLAFFLGGNGTLLAPR-------VLRLPADEVLPYDEL 146 Query: 114 SVNEHIEQMRLSATKAMLER-RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRA 171 S HI RL + + R +V S+ A+ P + LT G ID+ Sbjct: 147 SPEPHIVSERLGTLFHLSQGTRFPALVLSLRALLRRVLPVSTMTGLAQLLTTGQDIDRDT 206 Query: 172 ILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLT 231 + R+L + Y + GTF VRG ++D+F + +R+E F + +E + LF+P Sbjct: 207 LARQLVLMGYQSSPLVEDPGTFSVRGGILDVFSPLYER-PVRLEFFGDTIESIRLFEPDN 265 Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 + V ++ ++ P + + +A + ++ + Sbjct: 266 QRTVDSLKEVSLVPARELLLTDQTRAKAEATARAVADHINLPTIK-------------LR 312 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP---ADGLLVVDES-------H 341 L+ + E G+E G T+FDYL + + D+ Sbjct: 313 ERLDALREGLPGFGLEGLLPGFFEGGL----ATVFDYLRLWAREPVFYFDDPVGLERAAT 368 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 ++ ++ AR++ + + Sbjct: 369 DLWEELERSHQEADARQDLTLPPSEHFLTREQ 400 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 105/676 (15%), Positives = 207/676 (30%), Gaps = 83/676 (12%) Query: 3 KPFKLNSAFKPSGDQPE------AIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL 56 +P + +P DQ A+R L E + +++ TG F +A++ Sbjct: 9 RPTTAEAPLRPLLDQLARGRDLTAVRDLVEAGAESGEGGSIVAATG-LFPFLVADLARRA 67 Query: 57 --QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS 114 ++P +++ L + + +P+ +T + S Sbjct: 68 TAEQPLVIVTATTRATEDLRAALSALVGTEHL-------------VELPAWETLPHERLS 114 Query: 115 VNEHIEQMRLSATKAMLERRD----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQR 170 RLS + + VV+ V ++ L + VG Sbjct: 115 PRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIAKGLGELRPVRAAVGDTYPLE 174 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + R L YAR D +RG F VRG ++D+FP ++ +RV+LF +E++ + F Sbjct: 175 DLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPP-TEPHPVRVDLFGDEIDDVRYFSVA 233 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + PR P + + + EEL Sbjct: 234 DQRSLDPAPRGLDAPPCREILLTPAVRERARARAEELPG--------------------V 273 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + L + + G+E+ S L + D LPA +V + + + Sbjct: 274 RDLLLRIADGIAADGMESLSPVLVDG-----MEQVADVLPAGARFLVIDPEKARARADEL 328 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + F L+ + + + + Sbjct: 329 VATTDEFLAAAWSSAAAGGGLPIDV--GAASFVPLSEAKGHAREGGRPW-FTLAAFGLDT 385 Query: 411 QVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 V T + + D ++ +R A VL T + A + E L G Sbjct: 386 DVDLTTSST----THPGYSGKPGDAAKDLERRRAEGWSVLSTMVGPGGARHVAENLRAEG 441 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 + E+ + GE +V + EGL ++ L+ + D G Sbjct: 442 LPAVFS---------AELDAPVAPGEA--VVTVGPFAEGLVDEDLQLILAAERDLTGKSG 490 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEE-HGITPQGL 589 + R + + RNV + P + ++ E G Sbjct: 491 ARRGEERKMPSRRRNV----------VDPLQLRPGDHVVHAHHGVGRFVEMTRRAVGSGA 540 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQN 649 + + L + +K G P + D V + + + ++ + G ++ Sbjct: 541 KRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGE--EPSVNRMGGADWAKTKS 598 Query: 650 LEFEEAAQIRDQLHQL 665 + +I D+L +L Sbjct: 599 KARKAIREIADELVRL 614 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/437 (15%), Positives = 132/437 (30%), Gaps = 40/437 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q E G+ Sbjct: 663 VPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFAERY--TGFP 720 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + SRF + L D + +V +H + + Sbjct: 721 VTVRGLSRFQNPADSEATVEGLRD----GSVDIVIGTHRLLTGNVRFKDLGLLIVDEEQR 776 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L + +SATP LE + + + + T + Sbjct: 777 FGVEHKETLKAL--------RTNVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHP 828 Query: 424 EVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDI 480 + V Q D + + IR+ +V + + +L E RV+ H + Sbjct: 829 VLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKM 888 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + ++ D +FDVLV ++ GLD+ + + + +AD+ G + L Q G Sbjct: 889 NEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVENADRFGLSQ----LHQLRG 944 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + + K + E R N + G G+ + D+ G Sbjct: 945 RVGRSSER---AYAYFL-YNATKPLTELAHDRLTTLATNTDLG---AGMQVAMKDLEIRG 997 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AA 656 N+ + G V D+ + + + + G + + E A Sbjct: 998 AGNLLGGEQSG--------HIAGVGFDLYVRMVGEAVAAFRGEGRAPEKEIRVELPLDAH 1049 Query: 657 QIRDQLHQLRELFIAAS 673 D + R A S Sbjct: 1050 VPHDYIGSERLRLEAYS 1066 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 112/683 (16%), Positives = 207/683 (30%), Gaps = 79/683 (11%) Query: 5 FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIA---------D 55 L +A + +R E + +G + +A V D Sbjct: 75 NGLRAALREDPSIAR-VRAHAEREHAKRSEDLQIGAPNGLRAPLLAEVAEGLAAAQANGD 133 Query: 56 LQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASV 115 + + + L ++ + PE+AV F PS +T + S Sbjct: 134 HAGVVLAVTATSRESEDLVAALRAYLPEDAVADF-------------PSWETLPHELLSP 180 Query: 116 NEHIEQMRLSATKAM------LERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQ 169 RLS + + +VVA V A+ L + L++G Sbjct: 181 RSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIVQGLADLEPVELSIGQRAPF 240 Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDP 229 ++RRLA+ YAR D RG F VRG +ID+FP +D +R+E F +E+E + F Sbjct: 241 DQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPP-TDPHPVRIEFFGDELESMRWFAV 299 Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 + +++I +PK + P ++ +K + + Sbjct: 300 ADQRTLTSISGTIEHPKALFAPPCRELLIT--------------PEVQSKAAKLKDSFPA 345 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 LE + G+E+ + L P + VV E + Sbjct: 346 AAAMLEKIAGGIAVEGMESLTPVLVDSMVPVVAE-----FPPGSIAVVLEPERVRGRAHD 400 Query: 350 MYRGDRARKE-TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT-----PGNYELEK 403 + + E + LD A QT + L Sbjct: 401 LEATNEEFLEAAWSTASDGGAAPLDVSQTLASASFASLAQTRGAALRAGVSWWSVSALGI 460 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMAEDL 462 + V +P VA ++ + S +R RV+V T A+ L Sbjct: 461 DDETAPELDVLSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGPAQRL 520 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 E + + S + + I V + G + + + + + Sbjct: 521 AELFHDADIPTARVDSLDEQPQLGIIE-----------VTTAAVGHGFVLDGLKIGLLTE 569 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 AD G + + R + A+ P + + ++ E Sbjct: 570 ADLLGRSSASGT---KDMRKMPSKRRNAV------DPLQLRGGDFVVHEQHGIGRFLELI 620 Query: 583 GITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G + + L L +K A G P + D + + + ++ G Sbjct: 621 QRKVAGTD-GSREYLVLEYAPSKRGAPGDRLFVPTDQLDQITAYVGGD--APALSKMGGS 677 Query: 643 MMQHAQNLEFEEAAQIRDQLHQL 665 +N + +I +L +L Sbjct: 678 DWASTKNKARKAVKEIAGELIRL 700 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 72/467 (15%), Positives = 141/467 (30%), Gaps = 48/467 (10%) Query: 226 LFDPLT--GQIVSTIPRFTIYPKTHYVTP----RERIVQAMEEIKEELAARRKVLLENNK 279 F T + + + P M+ + K + Sbjct: 711 SFSADTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRA 770 Query: 280 LLEEQRLTQRTQFDL--EMMNELGYCSGIENYSRF------LSGRGPGEPPPTLFDYLPA 331 + + ++ + ++ + Y + E +S F LS G+ + + Sbjct: 771 AFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRFQSGKEAKETAEGVAN 830 Query: 332 DGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIY 391 + VV +H + + + +G L + + Sbjct: 831 GSIDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEQLKKMRNNVD--------VLA 882 Query: 392 VSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL-SEIRQRAAINERVL 450 +SATP LE S + + T + + V D + IR+ +V Sbjct: 883 MSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRRELMREGQVF 942 Query: 451 VTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 E + ++++ R H + +II D FDVLV ++ Sbjct: 943 FVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIET 1002 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGET 568 GLD+ + + + ADK G + + R G+ Y + P+ K +GE Sbjct: 1003 GLDISNANTLIVDGADKYGLSQLHQL-------RGRVGRGRERAYAYFLYPAE-KPLGEV 1054 Query: 569 ERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDM 627 R K H G+ + D+ G N+ + G V D+ Sbjct: 1055 ALERLKAV---AAHNELGAGMQLALKDLEIRGAGNLLGGEQSG--------HIAGVGFDL 1103 Query: 628 SPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELFIA 671 + + + + + G A +++ E A D + R A Sbjct: 1104 YIRLVGEAVADYRGETEDKAADMKIELPVNAHLPHDYVPGERLRLEA 1150 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 101/648 (15%), Positives = 211/648 (32%), Gaps = 93/648 (14%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 + L E L+ H L G+ K ++++ L++ +V+ A + Sbjct: 47 LQTLPLSKDLREKLQK-RGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWT 105 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER- 133 +++ +Q + P+S+ + + ++ +++ Sbjct: 106 AQLELMG--------------WQTVNFYPTSEASPYDPGRLESEMVWGQMQVLAELIQGH 151 Query: 134 --RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQR 190 + +VA+ A+ P + L L G +D +++ LA L Y R Sbjct: 152 QVKGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETE 211 Query: 191 GTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV 250 G + RG+++DIFP S ++ +R+E F +E+E++ FDP + + + + + P + Sbjct: 212 GQWSRRGDIVDIFPV-SAELPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTS--- 267 Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYS 310 + I+ L A+ L + E ++L G E Sbjct: 268 --------FDQVIEPALNAQAIDLSAWGEDAETEQLF-----------------GKEGLQ 302 Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 RFL P L DYLP + + V+DE + +LP+ Sbjct: 303 RFL--GLAFTEPACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDW-----SALQLPN 355 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + L Y++ + + + GD +D RP + Sbjct: 356 LPQLHRNFSALGDRLKTDFQYITLSEIHE----ANGDSLDISARPIPTM---------PH 402 Query: 431 QVDDLLSEIRQRAAINE----RVLVTTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVE 484 Q L +R + I T L L+EH V+++ + D +E Sbjct: 403 QFAKLAEILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIE 462 Query: 485 RMEIIRDLRLGEFDVLVGINLLR-EGLDMPEVSLVAILDADKEGFLR-SERSLIQTIGRA 542 + +I R ++ L EG +P LV + D + G + ++ R Sbjct: 463 KSQIQRTAVTLKY-----SGLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRR- 516 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 ++ + + K+ + + + ++ Sbjct: 517 ---------ATSKQVDINKLSPGDYVVHKSHGIGKFLKLDALANREYL--MIQYADGILR 565 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + + R M K + +++ + + A +L Sbjct: 566 VPADSLDSLSRFRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDL 613 Score = 178 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 103/293 (35%), Gaps = 26/293 (8%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQR 442 + ++ATP L S + + + T I+ + + + IR Sbjct: 792 KTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNE 851 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERMEIIRDLRLGEFDVL 500 +V E+L L + R H ++ E + GE D+L Sbjct: 852 LDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADIL 911 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 V ++ GLD+P V+ + + DA K G + L Q GR R+ + + P+ Sbjct: 912 VCTTIIEAGLDIPRVNTIIVEDAQKFGLAQ----LYQLRGRVGRSG---IQAHAWLLYPN 964 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVE 619 K + E R R + + + G G D+ G N+ + G + Sbjct: 965 -QKQLTEKARLRLRALQEFSQLG---SGYQLATRDMEIRGVGNLLGAEQSG--------Q 1012 Query: 620 PDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQIRDQLHQLRELF 669 + + + + LQ I E++G + ++ + + A D + L E Sbjct: 1013 MEAIGYEFYMEMLQDAIKEIQGQEIPKVEDTQIDLPLTAFIPSDYIPDLEEKM 1065 Score = 45.2 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 8/145 (5%) Query: 395 TPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT-- 452 P +L+ D + +D ++ + + + I + + + Sbjct: 645 QPTPDQLKAVQDVKRD--LEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLA 702 Query: 453 ---TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLRE 508 LT++ L E + + L+ E+ EI+ L+ GE D++VG +L Sbjct: 703 PTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGT 762 Query: 509 GLDMPEVSLVAILDADKEGFLRSER 533 + ++ L+ I + + G + E+ Sbjct: 763 SVKFKDLGLLVIDEEQRFGVNQKEK 787 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 92/642 (14%), Positives = 187/642 (29%), Gaps = 59/642 (9%) Query: 33 AHQTLLGVTGSGKTFTIANVIAD-LQRPTMVLAPNKTLAAQLYGEMKEFF-PENAVEYFV 90 + + G GS I ++A R + L P+ A L + +A + Sbjct: 84 GTRHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEA 143 Query: 91 SYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD-VVVVASVSAIYGLG 149 + + ++ D + + Q RL+ + V+V ++A+ Sbjct: 144 AGSTTFGRVLLYLPNEASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKV 203 Query: 150 -DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 D + + +D+ A+ RL Y R+ GTF VRG ++D++ A S Sbjct: 204 VSRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVW-APSA 262 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R++ + + V + F+P + V+ + I P + + +A + ++ Sbjct: 263 ELPVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACD 322 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + + ++ + G E Y Y Sbjct: 323 VIDFP-------------STKARALVDDVASGRAFFGAEGYLPAFIDLASFTS------Y 363 Query: 329 LPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 LP D L+++++ + + R R E F L S ++ A A Sbjct: 364 LPDDALILLEDPSSVTAAVRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGARAV 423 Query: 388 QTIYVSATPGN-------YELEKSGGDVVDQVVRPTGLLDPIIEV----RPVATQVDDLL 436 ++ + G E DV R L+ I+ R +D L+ Sbjct: 424 LALHRTGVEGAAENRNSLERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDPLV 483 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG- 495 + RVL+ + E L L RV+ D G Sbjct: 484 RRVVAWQEAGLRVLIAARAQTQVERLVALLRHRDVRVKANLGPFDP--------AFFDGS 535 Query: 496 -----EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA 550 LV L G+ P L + + + G R+ + Sbjct: 536 SSASPRDTALVVTGSLARGVIAPAEGLALVTEEEIFGARAHRRAARAAASSTKPSQ---- 591 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKG 610 +Y ++ + G + Sbjct: 592 ---AFLEDLRNLGVGDHVVHVEHGIGRYLGLVHKQVGSTTVDLIAVEYAGGDKLYLPVYR 648 Query: 611 RGKSRPIVEPDNVPM--DMSPKALQQKIHELEGLMMQHAQNL 650 + + + P + + + +E + + A L Sbjct: 649 LNQIQKFSGGEGTPKLDRLGGQTFAKTKARVEKSVRKMADEL 690 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/471 (15%), Positives = 139/471 (29%), Gaps = 54/471 (11%) Query: 202 IFPAESDDIALRVEL-FDEEVERLSLF-----DPLTGQIVSTIPRFTIYPKTHYVTPRER 255 + P + D A FDE ++ D +G+ P V Sbjct: 705 VPPPDDDYRAFEATFPFDETPDQARAITEVTADLESGR-----------PMDRLVCGDVG 753 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 + I+ A Q ++ + R +S Sbjct: 754 FGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHY------LSFRSRMASYPIEVRVMSR 807 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 + + L + VV +H + + R + +G + Sbjct: 808 FQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTHKERIKAL 867 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL 435 + +SATP L+ + + D + T +D V + + Sbjct: 868 --------KTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAV 919 Query: 436 LSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDL 492 L E + + +V + L E R H + + + D Sbjct: 920 LREAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDF 979 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G +DVL ++ GLD+P + + I AD G + L Q GR R+ Sbjct: 980 VEGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQ----LYQLRGRVGRSKER---A 1032 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 Y I P A+ + R R + + + E G G +D+ G + Sbjct: 1033 YCYLIVPPPN-AMTDEARARIEALERHTELG---SGFQIASLDLELRGSGDLLGAEQSGT 1088 Query: 613 KSRPIVEPDNVPMDMSPKALQQKIHELEGLM--MQHAQNLEFEEAAQIRDQ 661 ++ V ++ + L + +HEL G L F+ A + ++ Sbjct: 1089 VAQ-------VGFELFCQMLDEAVHELRGEPVVHDVDTELSFDADALLPEE 1132 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 218 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 93/659 (14%), Positives = 213/659 (32%), Gaps = 89/659 (13%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 Q A + L + G + + + + + + LQ+ +V+ PN+ Sbjct: 2 KKIDEILKQNPAFKTLLK----GEGNIIVNDLND--EALLVTSAFLTLQKDIIVIKPNQY 55 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A LY ++ +++ + P +++ + + + + R+ A Sbjct: 56 EANLLYQQISLINEKDS--------------LFFPVDESYRIEALASSPELLGQRIDALY 101 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 + + +++ A+ L+L L+L GM ID + + L + Y + Sbjct: 102 QLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRV 161 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 Q F RG VID+F + D+ LR+E FD+E++ + ++ + + + + TI P + Sbjct: 162 DQPFYFSKRGGVIDVFSIQYDN-PLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPAS 220 Query: 248 HYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIE 307 + + + + +I + R +E L ++ + D E + + Sbjct: 221 DILYDEQEVPAVLSKIND----LRDRQIEELDELYQEDYLSKVSIDQENLRNHDTSFTMY 276 Query: 308 NYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFR 367 Y +L DYL L++ +H + + L G Sbjct: 277 GYFNLF------NQTASLLDYL-DTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKT 329 Query: 368 LPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRP 427 + R L + A L + +++ Sbjct: 330 IKGLNLFRDLYEVIDRKSVNFKPF--AQSDKDVLFNARAIMIN----------------- 370 Query: 428 VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERME 487 ++++IR + +V+V + +TE + H E Sbjct: 371 -NDDEAMIINQIRAYLKL-SKVVVALDDDHQLKLMTELFDRH--------------EMAY 414 Query: 488 IIRDLRLGEFDVL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + ++ + L + +N + G+++ + +V I + ++ Sbjct: 415 TLIGIKDEIYPGLNIAVNKIGFGIELVDEKIVIISANELFKTRNIKKP------------ 462 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 AK + + + ++ HGI K + + Sbjct: 463 --------KYFKYKNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVA 514 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 A P+ + + S + KI++L G Q + + I D+L ++ Sbjct: 515 YAGDDTLYIPVEQFKMIRKYSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIADKLIEI 573 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 78/516 (15%), Positives = 163/516 (31%), Gaps = 74/516 (14%) Query: 170 RAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL---FDEEVERLSL 226 I +L E+ Y+ + Q G + FP++S+ +++E F E+ Sbjct: 564 DDIADKLIEI-YS--ARINQPG-YA--------FPSDSE---IQLEFERSFGYEL----- 603 Query: 227 FDPLTG-QIVSTIPRFTIY--PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + + V I P + + ++ A Sbjct: 604 --TVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTT 661 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 Q + + + L+ + + L + ++ +H Sbjct: 662 ILSMQHYKTMIARFKDFP------VKIALLNRFTSTKEKKQILSDLKLGNIDLLVGTHRI 715 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK 403 + + + +G + + + + ++ATP L+ Sbjct: 716 LSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTID--------VLTLTATPIPRTLQM 767 Query: 404 SGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDL 462 S + T + V + + L+ +I + A + +V ++ Sbjct: 768 SLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERELARDGQVFYLYNRTSQIANV 827 Query: 463 TEY--LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L G RV H +D E +++ EF+VLV ++ G+D+P + + + Sbjct: 828 AYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDIPNANTIIV 887 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 DADK G + L Q GR R+ G Y + + K + E +R K K Sbjct: 888 EDADKFGLSQ----LYQIKGRVGRSNRG---AYAYLL-YNPTKVLNEEASKRLKAIKEFT 939 Query: 581 EHGITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI-HE 638 E G G + D+ G +I G D++ +M K LQ I + Sbjct: 940 ELG---SGYKIAMRDLAIRGSGDILGGTQSGF--------IDSIGFEMYMKILQDAINEK 988 Query: 639 LEGLMMQHAQNLE--------FEEAAQIRDQLHQLR 666 + ++ + ++ + + + +L Sbjct: 989 MGKEDVEAEKEIKSVNVKVDGYIPHDYVSSDIEKLE 1024 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 84/488 (17%), Positives = 168/488 (34%), Gaps = 46/488 (9%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 IR + L G + + + + +A + L RP +V+ P + A +L + Sbjct: 21 SRTIRTVASRLASGQSLVA-EELPVAARPAVLAALARILDRPLLVIVPRQAHADELADAV 79 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVV 137 + E VE + + +T + + R + M E + Sbjct: 80 GQLLGEIPVEVWQAP-------------ETLPYDVFAQDRASAVERSWFLQRMTEPSPGL 126 Query: 138 VVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 +A + L P + L L VG + + +L L + YA Q G+F R Sbjct: 127 FIAPARGLLQLLPPNESLRGCPLTLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRR 186 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G ++D++P +D +A+R+E F +E++ + F+P T + V + + P + P+ + Sbjct: 187 GGIVDVWPPGND-LAVRIEFFGDEIDSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQA 245 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGR 316 + + R +V E +L ++ G L+ Sbjct: 246 AATKLRRLDTSSLRPEVREEWERLCQQIE------------------RGELVPLPELALP 287 Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRP 376 +L D P +VV + I + + +ET G Sbjct: 288 FVFPEASSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELRETSELSGELPRGLPRPYH 347 Query: 377 LKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLL 436 + +L I T + + + GD+ + T ++ +A ++D L Sbjct: 348 PDDRIWTSLRVHPILWLGT--VEQGDSANGDIPSDLGFTT-------DIPAIAGRLDTLP 398 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 + + A + V + T A+ L L E + T+ R + + E Sbjct: 399 AVLAPFLAEDYAVTLVTE---QADRLAHLLSESSQYAEAASIAASTIARGRLPGGWKHRE 455 Query: 497 FDVLVGIN 504 +L+ + Sbjct: 456 ARLLLLTD 463 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 124/400 (31%), Gaps = 37/400 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q E + Y Sbjct: 634 PMDRLLCGDVGFGKTEVALRAAFKAVNNGYQVAILVPTTVLALQHYNTFRERLA--SYPV 691 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SR S R + + L A + +V +H + + R + + Sbjct: 692 RIEMLSRLRSKREQRA----IIEGLRAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRF 747 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + ++ATP L + V D V T +D Sbjct: 748 GVAHKEHFKRL--------RTNVDVLTMTATPIPRTLYLALSGVRDLSVIATPPVDRTPV 799 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V D ++ E I + A +V V D + L R H + Sbjct: 800 RTFVTPARDSVIREAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAVAHGQMP 859 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E II D ++DVL+ ++ G+D+P V+ + I A + G + L Q GR Sbjct: 860 EQELERIIVDFIERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGLTQ----LYQLRGR 915 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + + + R R + + E G GL + D+ G Sbjct: 916 VGRSHQR---AYAYLLYDDR-RPLSAEARARLEAIQEATELG---AGLQIALRDLEIRGA 968 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 NI + G V +++ + L + + EL Sbjct: 969 GNILGPEQSG--------HIAAVGLELYTQLLARAVQELR 1000 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 102/651 (15%), Positives = 194/651 (29%), Gaps = 94/651 (14%) Query: 53 IADLQRPTMV-LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 A+ P ++ + A +L + + P + F PS +T + Sbjct: 70 AAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANF-------------PSWETLPHE 116 Query: 112 DASVNEHIEQMRLSATKAMLERRD-----VVVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S RLS + + VVVA V ++ L + L G Sbjct: 117 RLSPRSDTVGQRLSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVAGLGQMEPVTLRTGQD 176 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 D + ++ LA Y+R D +RG F VRG +ID+FP ++D +R E F +E++ + Sbjct: 177 YDFQQLVVELAGAAYSRVDMVTRRGEFAVRGGIIDVFPP-TEDHPVRAEFFGDELDEMRW 235 Query: 227 FDPLTGQIV--STIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 F + + + P + P + + ++KE+L Sbjct: 236 FAVADQRTLTTAEHPSVIVAPPCRELLITPSVQSRAAKLKEQLPGG-------------- 281 Query: 285 RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + LE + Y G+E+ + L + + LPA + VV E Sbjct: 282 ------REMLERIAGGQYVEGMESLAPLL-----ADEMLQVMSLLPAGSMTVVLEPEKVR 330 Query: 345 PQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + + + + A + + + A S + + Sbjct: 331 ARAHDLVATNEEFLMAAWDSASGGSEAPLDLNAALDTDDDAARTLSSGSFHTIAEVRDLA 390 Query: 405 GGDVV--------------------DQVVRPTGLLD--------PIIEVRPVATQVDDLL 436 V D L D E + V +L Sbjct: 391 LERSVGWWSVTGLNVNAVTTSQMDADTSDEEVHLADTDADTLTVTAREPTRFSGDVPAVL 450 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS--DIDTVERMEIIRDLRL 494 S + +RA + R+++ T + L+E L S D +E Sbjct: 451 SFLGERAREDWRIVLVTDGPGPLQRLSELLHGADVPAARYDSVDDAPQPGLVE------- 503 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 + G + + + +AD G + + + R N L Sbjct: 504 ------LTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERKLPQRRKRNQVDPL-- 555 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + + +T G K V + L L +K Sbjct: 556 ALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPRDRLF 615 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P + D V + + + ++ G + + +I ++L +L Sbjct: 616 VPTDQLDQVSTYVGGE--APSLSKMGGADWNKTKRSAKKAVKEIANELIRL 664 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 126/434 (29%), Gaps = 40/434 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P ++ + ++ A + + Q ++ E S Sbjct: 714 PMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAER------FS 767 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G LS + + L + + VV +H + + + + Sbjct: 768 GFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRF 827 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + +SATP LE S + + T + Sbjct: 828 GVEHKEKL--------KAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPV 879 Query: 425 VRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 + V + + + IR+ +V E + L E R H + Sbjct: 880 LTYVGPYTNKQVSAAIRRELMREGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMT 939 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +II D +FDVLV ++ GLD+ + + + AD+ G + + Sbjct: 940 ESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDHADRYGLSQLHQL------- 992 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R G+ Y + P+ ++ K H G+ + D+ G Sbjct: 993 RGRVGRGRERAYAYFLYPAEKPL----SETALERLKAVAAHNELGSGMQLAMKDLEIRGA 1048 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQ 657 N+ + G V DM + + + + E G ++ E A Sbjct: 1049 GNLLGGEQSG--------HIAGVGFDMYLRLVGEAVAEYRGDQDTGPAEMKIELPVNAHL 1100 Query: 658 IRDQLHQLRELFIA 671 D + R A Sbjct: 1101 PHDYVPGERLRLEA 1114 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 94/681 (13%), Positives = 204/681 (29%), Gaps = 103/681 (15%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQR-PTMVLAPN 66 S + A++ L LE+G +L G++ S + F A + L P ++++ + Sbjct: 3 TSKLFAKISETPAVQSLLRRLENG-GVLSLNGISASAQPFLAALLRQLLPELPIVLVSDS 61 Query: 67 KTLAAQLYGEMKEFF-------PENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 +++ + + P+ + + + + Sbjct: 62 LKTQESFQQDVETWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADV 121 Query: 120 EQMRLSATKAMLERRDVV------VVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAI 172 RL A+ + ++A+V+A+ + + L G ++ + Sbjct: 122 ISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDL 181 Query: 173 LRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTG 232 + L E Y Q Q+G +RG ++D++P S +R+E F +E+E L FDP+T Sbjct: 182 IEWLEEQGYEPEAQVTQKGEIALRGGILDVYPMTS-PWPVRLEFFGDELESLRYFDPITQ 240 Query: 233 QIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQF 292 I T+ P + ++ + + L L E +R+ + T Sbjct: 241 ISREQIATVTLPPGGEFGILKQLAARDQQASLATLLDYL-PTGTLFILSEPERIEEHT-- 297 Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 E YS + P P + D ++ E + Q+ + Sbjct: 298 --------------EQYSTQVPNEDPFHIPWS-------DFQELLSEKGMKSLQLSEIVM 336 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQV 412 + ++ + A D RP +L ++ + Sbjct: 337 DGESEGMDVLSESEAV--AEDERPFGESTENSLPFSSL--------------------EA 374 Query: 413 VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 RP G P ++ Q + +++ + + V + + E +++G Sbjct: 375 FRPLGARAPEPQIA--EAQRREFFAQLHRWSRQGYDVHLFCNNDGERQRFQEVWKDYGFG 432 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 D + + + L G E +V + DA+ G + + Sbjct: 433 -----------------EDF-----GLKMHLGALGRGFLNEEAKVVVVTDAEIFGRYKVQ 470 Query: 533 RSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP----QG 588 R A + I + + + R + + G Sbjct: 471 RPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQHGIGRYQGLKVLPVTLGRKGVDPNAT 530 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPK------------ALQQKI 636 + L + + + P+ E V + + Sbjct: 531 PADSGQECLVIEYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKARPQLNTIGGTRWAKAK 590 Query: 637 HELEGLMMQHAQNLEFEEAAQ 657 + E + A L +AA+ Sbjct: 591 AQAERAVRDVASELLAIQAAR 611 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 70/410 (17%), Positives = 127/410 (30%), Gaps = 35/410 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + Q E + + Y Sbjct: 657 PMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTFKERVAD--YPM 714 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF S + + LPA + +V +H I + + Sbjct: 715 RVELLSRFRSPKNR----KRVISELPAGAVDIVIGTHRLIQSDINFKDLGLVIIDEEQRF 770 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + +SATP L + D T D + Sbjct: 771 GVLHKEKFKQI--------RKLVDVLTLSATPIPRTLYLALTGARDMSTIETPPQDRLPV 822 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA + L+ E I++ +V + + + L R + H + Sbjct: 823 ETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMK 882 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + E++ GE DVL+ ++ GLD+P + + I AD+ G L Q GR Sbjct: 883 PDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLS----DLYQLRGR 938 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + P A + + R+R K G G + D+ G Sbjct: 939 VGRYKHQ---AYAYLLLPRHAGLLAD-ARKRISALKQYSTLG---SGFKIAMRDLEIRGA 991 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE 651 + + V D+ + L+Q + L+G ++ ++ Sbjct: 992 GNMLGPEQSG-------QITAVGFDLYCQLLKQSVAALKGEKVKPRVEVQ 1034 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 215 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 87/512 (16%), Positives = 165/512 (32%), Gaps = 61/512 (11%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 Q + + L+ G + + GS ++ +++ N AQL E Sbjct: 19 QQQISELKLKQLKAGEKR-WIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESE 77 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 ++ + P + S ++ I RL+ M + Sbjct: 78 LEFY---------------GVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNM--PQTG 120 Query: 137 VVVASVSAIYGLGDPDLY-LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 V++ S S + P + L + VG +D RL + Y D + G F V Sbjct: 121 VLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAV 180 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++DI+ A + +R++LFD+E++ L FDP T + + +F I P + +E Sbjct: 181 RGSIMDIY-ASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPL-KEG 238 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 E E + + + G+E Y Sbjct: 239 RSIFRERYAEAFPTANPKK----------------NPIYQDVLDGIASPGVEFYLPLFFE 282 Query: 316 RGPGEPPPTLFDYLPADGLLVVDES-HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 +G E YLP + +++ +++ ++ + ++ P L Sbjct: 283 KGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRYESRRHNIDQPILSPEHLFL 342 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 P E P+ S + + G + V +P L V P + Sbjct: 343 MPNMVLEQLKQFPRIHVSS-----EIIAERVGGINLPVSQPVKL-----AVDPKKEHPFE 392 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 ++++ N VL+ + E L + L DI VE + Sbjct: 393 VVTKYINEV--NHPVLLVAESAGRRESLKDALRPSL-------GDIPNVEGFDA---FVK 440 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 ++ + + L GL + L I + Sbjct: 441 QQYAIAITNAPLDRGLVLSS-QLAVISENQLY 471 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 21/276 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + + D + T + V Sbjct: 752 EHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFV 811 Query: 429 ATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVER 485 DD + I + +V E E + R H + E Sbjct: 812 QEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMREREL 871 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++++ E++VLV ++ G+D+P + + + ADK G + L Q GR R+ Sbjct: 872 EQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQ----LHQLRGRVGRS 927 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + PS+ K + +R + G G D+ G Sbjct: 928 HHQ---AYAYLLVPSI-KHLKGDAEKRLDAIQRASTLG---AGFMLATEDLEIRGAGELL 980 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + + + + + L++ ++ Sbjct: 981 GEQQSGS-------MQAIGYSLYMEMLEKATKAIQK 1009 >UniRef50_A4VYI1 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Streptococcus suis 98HAH33 RepID=A4VYI1_STRS2 Length = 320 Score = 214 bits (545), Expect = 7e-54, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 138/328 (42%), Gaps = 33/328 (10%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + + I + + GL Q LLG++G+ K+ +A L M++ + A +L Sbjct: 6 LLHKNKQINQWQSGLNQSTR-QLLLGLSGTSKSLIMATAYDCLAEKIMIVTATQNDAEKL 64 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 ++ V F + D+ I + ++ Q R+ + + + Sbjct: 65 VADLTAIIGSENVYNFFT-------------DDSPIAEFVFASKERTQSRIDSLNFLTDS 111 Query: 134 -RDVVVVAS-VSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRG 191 ++VAS V+ L P+ Y + L VG I+ +++ L + Y + + +G Sbjct: 112 TSSGILVASIVACRVLLPSPETYKGSKIQLEVGQEIEVDKLVKNLVNIGYKKVSRVLTQG 171 Query: 192 TFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 F RG+++DIF +S+ R+E F +E++ + +FD + + + + +I P + + Sbjct: 172 EFSQRGDILDIFDMQSE-TPYRIEFFGDEIDGIRIFDVDSQKSLENLDEISISPASDIIL 230 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 E +A + I+ +E+ L ++ + E++ ++ + + Sbjct: 231 SSEDYSRASQYIQT--------------AIEQSTLEEQQSYLREVLADMQTEYRHPDLRK 276 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDE 339 FLS E TL DYLP L +D+ Sbjct: 277 FLSCI--YEQSWTLLDYLPKSSPLFLDD 302 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 78/494 (15%), Positives = 169/494 (34%), Gaps = 61/494 (12%) Query: 36 TLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDY 95 + GS + + + +++ + A ++Y E+K N+ Sbjct: 12 VVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNS---------- 61 Query: 96 YQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ERRDVVVVASVSAIYGLGDPDLY 154 + P+ + S + I R M + ++ +++ S+S P + Sbjct: 62 KVDILFFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASF 121 Query: 155 -LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALR 213 + L G +D L E Y + F++G F +RG +IDI+P S +A R Sbjct: 122 IQEHSFILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGS-KVAFR 180 Query: 214 VELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKV 273 ++LFD E++ + + + + + I I P V + A++++ + Sbjct: 181 IDLFDNEIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGD---- 236 Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + Y SGIE Y + +L+DYLP Sbjct: 237 -------------KALNSTIATYIQNNEYFSGIEFYLPLFYDKL-----SSLYDYLPPST 278 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ-TIYV 392 + + ++ I + R L R +E + + Q Sbjct: 279 NIHLVDN--ITNSIEAFSDEVKFRYNELKHDSDRPILPFQEIFYSQQEIQDIYQQYKNIK 336 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 + + D ++++ L +P +++ + + ++V+ + Sbjct: 337 WFQQPKSKSKILKVDHLEKISANYKLANPFKDLQQFIDK------------SNFDKVIFS 384 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 T + AE L E+L + ++ + E +E L+ I+ +EG+ + Sbjct: 385 TDSNGRAELLLEHLNKLNLNIQSC---KNFNEAIEASTKF------CLI-ISPFQEGMII 434 Query: 513 PEVSLVAILDADKE 526 + + I +AD Sbjct: 435 DK-KIALITEADLF 447 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 55/413 (13%), Positives = 127/413 (30%), Gaps = 40/413 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + + Q + Sbjct: 618 PMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQHYNSFKDRFTNTAVN- 676 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ + LF+ L + ++ +H I + + Sbjct: 677 -----IEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLGLLIIDEEHRF 731 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + + + + +SATP L + + D + + + Sbjct: 732 GVAQKEKLKSLKAEID--------ILTMSATPIPRSLSMAFSALRDLSIIASPPAKRLSV 783 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 V ++++ E + + ++ + E L+E R+ H + Sbjct: 784 KTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQMS 843 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ D + ++ +L+ ++ G+D+P + + I DA+ G + L Q GR Sbjct: 844 EKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQ----LHQLRGR 899 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + P+ A +I + +R + E G G D+ G Sbjct: 900 VGRSHHQ---AYAYMLIPNEA-SITKDALKRLEAISNTESLGG---GFTLANHDLEIRGA 952 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + D + +++ L + I L + L EE Sbjct: 953 GEILGEEQSGN-------IDGIGLNLYMDLLDKTIANLR-----AGKELNIEE 993 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 100/650 (15%), Positives = 202/650 (31%), Gaps = 86/650 (13%) Query: 21 IRRLEEGLEDGLAHQTLLGVTG-------SGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + ++ L+D A +TL G S + + IA R +++ N+ A L Sbjct: 4 MEKILNLLKDNQALRTLDTDNGTIVTNSTSDEAYLIAGSFWHNPRKILIIKNNQYEAFNL 63 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 Y + E + Y P+ ++ + + + + R++A AM + Sbjct: 64 YKTLTELVNQ---------------VVYFPADESLRVESVAYSYELLGERINALYAMTQD 108 Query: 134 RDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + ++ V + ++ P DL+ K ++ L G ID + + L + Y + Sbjct: 109 KPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQFIGYKNTQRVDSPFY 168 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 + RGEV+D++ + D +R+E FD+E+E +S +D + + + I I P T + Sbjct: 169 YSRRGEVLDVYTIQYD-HPVRIEFFDDEIEEISFYDKDSQRRTNKIESIDILPATDMMYE 227 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + + Q I + K + L Q D+E + Y I Y Sbjct: 228 DDGLSQVEASI------QTLKDKMTVKDDFKDELEQTYALDIESLKAHDYNPRIYQYLGL 281 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 T+ DY D ++ + + L E G + Sbjct: 282 F------PETATIMDY-ARDYTIITASLASILASYKTYMEENYLYYHELEEIGQMIRGLK 334 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 + + E ++ + V+ + +Q+ Sbjct: 335 LINNPQTILKRQNVDFVRF-------RENDQQIMFMTQPVMISMANE------KIFISQL 381 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 DLL+ RV++ KR + L +H + Sbjct: 382 KDLLT--------YNRVMIGVDEKRQIDVLVNLFTDHAIPFT----------LTSATNKI 423 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 G L L G++ E V + + +++ I+ Sbjct: 424 YDGVNLFL---GHLPCGMNFVEEKTVLLTSQELFKVQETKKKYIKYRDAT---------- 470 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 + K +Y + G++K + I G +I + Sbjct: 471 --KISDYNELKVGDYVVHDTNGIGQYMGIETLVVDGVHKDYLHIAYKGNDILYVPVEQFQ 528 Query: 613 KSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 R D P + ++ + + A +L A ++R Sbjct: 529 LIRKYSSRDGKPPRIHALGSPKWAKEKARVRQKVDGLADDLINLYAERMR 578 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 65/405 (16%), Positives = 133/405 (32%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A +Q + + + Sbjct: 622 PMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPVN- 680 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L+ + + L + ++ +H + + + + Sbjct: 681 -----IALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRF 735 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G R + N + + ++ATP L+ S + T L+ + Sbjct: 736 GVRQKEKIKNLRKTID--------VLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPV 787 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V+ + L+ + I + + N +V ++ L+ R H +D Sbjct: 788 QTYVSEKSWALIKQVIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMD 847 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ D ++D+LV ++ G+D+P + + I +ADK G + L Q GR Sbjct: 848 KTELEDVMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENADKFGLAQ----LYQIKGR 903 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG- 600 R+ I Y + + +A+ E ++R K + G G + D+ G Sbjct: 904 VGRSAR---IAYAYLL-YTKDRAMTEEAQKRLTAIKEFTQLG---SGYKIAMRDLSIRGS 956 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 +I + G D V DM K LQ I E +G + + Sbjct: 957 GDILGGEQAGF--------IDQVGFDMYMKILQDAIDEKQGKIKE 993 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 99/627 (15%), Positives = 231/627 (36%), Gaps = 72/627 (11%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 E + + G + + I N + +V++ +K A +L+ + +F E Sbjct: 15 EKKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGE----- 69 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 P D ++ S + + Q + + ++ +++ + AIY Sbjct: 70 ----------TYIYPEIDIL-KRHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIYRT 118 Query: 149 G-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 +P + + +I + R+L + Y R + G F RG ++DIF S Sbjct: 119 VKNPSDFKNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLS 178 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 + +R++ FD+E++ + +FD +T + + I IYP + + E +E + +L Sbjct: 179 EK-PIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKL 237 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + K Q ++ + +E+ G S +E++S + E ++ D Sbjct: 238 DD-----KKIQKDENYQEISTYLKEKVEIYRATGDFSDLESFSNLIY-----ENTYSIAD 287 Query: 328 YLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 YL D ++ D H + +I G+ R + + +DN FE+ + L Sbjct: 288 YLNDDTIVFYDNYHKILEKIEGL-REYFLTSLQEMNRSYIYQDVIDNI--AFEKIQNLDI 344 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINE 447 + Y+S + D+++ LD II++ +++ + L EIR++ N Sbjct: 345 RKYYLSTLK-----------LNDKIIEKNYNLD-IIDLAYYSSE-EYLAKEIREKITDNY 391 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 +V+++ T++ + + + L ++ +I ++ G+ + + L Sbjct: 392 KVIISLNTQKQKDYVEKVLFDNYFY-------------DDIYYGVKEGKIFIDLNKYHL- 437 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGE 567 +GL+ + + + + +E + + + K Y + + Sbjct: 438 KGLEDRKNKIFLLTPRELF----TEEERKKRRVKFKYTNSEKIRNYQELNIGDYIVHVSH 493 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM-- 625 E + + G+ K + I+ G +I + + Sbjct: 494 GIGLYEGIE------NVEVGGVFKDFLKIVYDGGDIIYVDINNMNYIQKYTASTDNRKPA 547 Query: 626 --DMSPKALQQKIHELEGLMMQHAQNL 650 + K Q+ + + +++L Sbjct: 548 LNKLGTKNWQKTKSRVRKEIEDISEDL 574 Score = 173 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 141/441 (31%), Gaps = 40/441 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 T + + M+ + E + + +T Q + + L Sbjct: 614 ATEEIKRDMEKERPMDRLL--CGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQH 671 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 +N+ + + F + I I G ++ + + + G Sbjct: 672 YDNFVNRFANFPINIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFK-YKDLG 730 Query: 366 FRLPSALDNRPLKFEEFEALAPQTI---YVSATPGNYELEKSGGDVVDQVVRPTGLLD-P 421 + +K +E T+ +SATP L S + D V T + Sbjct: 731 LLIIDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQ 790 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSD 479 I+ A + + +V ++ L+ + Y H Sbjct: 791 PIQTFVTAQNKMVIKEAVMNEVNRGGQVFYVYNRVETIDEKYLELKRLLPDINIAYAHGR 850 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + E I+ D+ ++D+L+ ++ G+D+ V+ + + DAD+ G + L Q Sbjct: 851 MSQRELENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQ----LYQLR 906 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ Y + K++ E +R K G G + D+ Sbjct: 907 GRVGRSSRE---AYAYLM-YEPFKSLTENSEKRLSAIKNFTSLG---SGFKIAMQDLSIR 959 Query: 600 GQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG-----------LMMQHA 647 G ++ + G D+V + + L+Q+I +G + + Sbjct: 960 GAGDVLGGRQHGF--------IDSVGYTLYSQMLEQEIQAKKGILEPLLEQDRTQDVSYY 1011 Query: 648 QNLEFEEAAQIRDQLHQLREL 668 +N+ E A I+ + ++ Sbjct: 1012 ENIIKEAAPSIKKDIFEVETD 1032 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 178/443 (40%), Gaps = 39/443 (8%) Query: 29 EDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEY 88 D L GV+ + K + + +RP + + + A + Y + + E + Y Sbjct: 19 ADKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILY 78 Query: 89 FVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGL 148 + P+ E S + + R++ K + ++V S++A Sbjct: 79 Y-------------PAKPITHEFIDSHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEK 125 Query: 149 GDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESD 208 G ++ I+D + L + YAR + +G + V+G ++D+F D Sbjct: 126 GL-FWGKDSIITKKTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIMG-D 183 Query: 209 DIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELA 268 ++ +R+E FD+E++ + FD TG+ + I +FT+ P + + I + ++++ +L Sbjct: 184 EVPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLE 243 Query: 269 ARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDY 328 + + L ++ D + + + + +L D Sbjct: 244 KAITQNEDEEIDKNYRELYEKIADDTNDTTKYIFYASKQ--------------TKSLID- 288 Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L D L++ D+ + ++ ++ + L E+G L ++N E A + Sbjct: 289 LYKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNHFKFAE-----AEE 343 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 + ++L + ++ + + D I V+ + +D++++ +++ + + Sbjct: 344 RFINLDSLIYFDLSMASNNLFCKDIVEVKSSDNINYVKNINYLIDNIVTYLKE----DYK 399 Query: 449 VLVTTLTKRMAEDLTEYLEEHGE 471 V++T ++ ++L+E+L + Sbjct: 400 VIITYKNEKEKKNLSEFLSNYNI 422 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 131/434 (30%), Gaps = 38/434 (8%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 YP + + + A + Q +E + + Sbjct: 627 YPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVPTTILAMQHYNTFVERFKD--FP 684 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 IE SRF + + + D L + +V +H + + Sbjct: 685 VKIEMLSRFKTKKEE----NRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVVDEEQR 740 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L T+ +SATP L S + D + Sbjct: 741 FGVAHKDKLKLL--------KENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREE 792 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 V D ++ + I + + +V + + AE L + G +V + + + Sbjct: 793 TETYVIEYDDYIIKDAINRELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQM 852 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E + + EFDVLV ++ GL++ + + I + + G + L Q G Sbjct: 853 PERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGLSQ----LYQLRG 908 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ A Y T KA+ E +R K + G G + D+ G Sbjct: 909 RVGRSNK-NAYCYV---TYEKDKALNEVAMKRLKAINEFTKFG---SGFQIAIRDLQIRG 961 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEF---EEAAQ 657 + NV ++ K LQ+ + E +G + A Sbjct: 962 SGNLLGANQSG-------HFTNVGYELYTKMLQEALKESKGEAQKEPVETTINIKINAYI 1014 Query: 658 IRDQLHQLRELFIA 671 + + ++ I Sbjct: 1015 DKKYIEDEKQRIIT 1028 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 83/502 (16%), Positives = 151/502 (30%), Gaps = 69/502 (13%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDGL-AHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64 L+ + D+P R E E G A Q + + + FT+A + +R + + Sbjct: 5 DLSGLLNAALDEPGLARVRELAAEGGPTAEQVHVTAPAAARPFTVAALAQA-ERTVLAVT 63 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 +L + P+ +V ++ P+ +T + S RL Sbjct: 64 ATSREGEELTQSLAGLLPDGSVAFY-------------PAWETLPHERLSPRSDTVGKRL 110 Query: 125 SATKAMLERRDV---VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 + + + VVVA V ++ L + L VG D + L++L Y Sbjct: 111 ALLHRLAHPQGAPLRVVVAPVRSLLQPQLKGLGDLKPVRLAVGESTDLSDLAAELSDLAY 170 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 AR D +RG F VRG ++DIFP +D+ RVE F +E+E + F + + Sbjct: 171 ARVDLVEKRGEFAVRGGILDIFPP-TDEHPSRVEFFGDEIESIRSFAVADQRSLDKADTL 229 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 P + + E + E + + Sbjct: 230 FAPPCRELLLSPRVRE---------------------RAAELGQQHPGLAELCEQLAQGI 268 Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY---RGDRARK 358 G+E+ + L + +P ++V + + + Sbjct: 269 PVEGMESLTPAL---LGADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSEEFLQAS 325 Query: 359 ETLVEYGFRLPSALD---NRPLKFEEFEALAPQTIYVSATPGNYELEKS------GGDVV 409 G + P LD + L A + S P + S Sbjct: 326 WAAAATGGKAPIDLDAAAFKSLSDVRQAASDHGCPWWSMGPFGVTEDLSPAQLEERKRAR 385 Query: 410 DQVVRPTGLLDPIIEVRP------------VATQVDDLLSEIRQRAAINERV-LVTTLTK 456 + + ++ + ++++ RV LV Sbjct: 386 ELAEITGEGFEELVVADETSVTVTATPAPLYHGNSVKVTGDVKRWTNDGWRVCLVFAG-H 444 Query: 457 RMAEDLTEYLEEHGERVRYLHS 478 +AE E L E G S Sbjct: 445 GLAERAVEQLAEAGVGASLADS 466 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 121/406 (29%), Gaps = 37/406 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + +Q E M++ + Sbjct: 823 TPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLVPTTLLASQHLNTFTERMSQ--FP 880 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 I+ SRF + + L A + +V +H + + Sbjct: 881 VTIKQLSRFQTDAEAEQIRKGLI----AGEVDIVVGTHRLLQTETRFKDLGLVIVDEEQR 936 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G L + +SATP LE + + + T + Sbjct: 937 FGVEHKEKLKAL--------RAHVDVLAMSATPIPRTLEMAITGIREMSTITTPPEERHP 988 Query: 424 EVRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + V D + + IR+ + +V E L E R + H + Sbjct: 989 VLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLREIVPEARVVVAHGKM 1048 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 +I++D GEFDVLV ++ G+D+P + + + AD G + + I Sbjct: 1049 GENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLGLSQ-----LHQIR 1103 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 +A Y K + E R + E G G+ + D+ G Sbjct: 1104 GRVGRGRERAYAYFM---YPPEKPLTEQAHERLATVAQHTELG---AGMYVAMKDLEIRG 1157 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N+ + G V D+ + + + +G + Sbjct: 1158 AGNLLGGEQSG--------HIAGVGFDLYVRMVGDAVRTFKGAKEE 1195 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 87/634 (13%), Positives = 194/634 (30%), Gaps = 52/634 (8%) Query: 24 LEEGLEDGLAHQTLLGV-TGSGKTFTIANVIAD--LQRPTMVLAPNKTLAAQLYGEMKEF 80 LE E + G + + ++ + P +V+ + A L ++ F Sbjct: 14 LERAFETTRGKIQVTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFF 73 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVV 139 P +P+ D N + R+ + + + Sbjct: 74 DPSRQSH-------------ILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFI 120 Query: 140 ASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGE 198 +SV A+ P + + G + + + L Y +G F VRG Sbjct: 121 SSVDALMQKTLPVKILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGG 179 Query: 199 VIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQ 258 ++DI+P +++ +R++LF ++VE L F + I F + P + E + Sbjct: 180 IVDIYPP-TENQPVRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHER 238 Query: 259 AMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGP 318 ++ ++ L R+ E + L L GIE + G Sbjct: 239 LLQRVRASLEGRKVDKAEAEETLRSLVLKNAF-------------PGIEFLLPYFYGELA 285 Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 T D+ P L + M+ +A T + R + Sbjct: 286 -----TPADHFPGALNLWFLDPVEISRCADEMWAELKADHRTSDAHVIRPELEDIYVNFE 340 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 + + Q + S + E + + + ++ Sbjct: 341 ALAYPLNSRQVYFSSLEYFDEENSDDSRVEYRTAMTQDFTNLALANAVGTEQWLQAATNK 400 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 + + R+ V+T + + L+ E+ + SD R + + E + Sbjct: 401 LHRWRDEGYRIFVSTKNQSHIDRLSLVFEKLELKAVRTSSD---EYRWDSWLQEQDREQN 457 Query: 499 VL-VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKI 557 ++ + L E L + E ++ + D D G + + G K + +GD Sbjct: 458 IVHIVPRYLAESLRLEEEKIIFLRDEDFYGKKQRAKES---SGAQDFQKQAKRLSFGDLK 514 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + + E + N G+ + + + ++ G+ + Sbjct: 515 PGDLVVHTKHGIGQYEGLKIMNI------SGVESEYIQVGYKDKDKLYLPVYRVGQLQKF 568 Query: 618 VEP-DNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 ++ + A ++ +++ + A +L Sbjct: 569 SGAGTSILDKLGGTAWEKTKAKVKSHVRDIAADL 602 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 102/308 (33%), Gaps = 25/308 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + T+ +SATP L + + D + T +D + V Sbjct: 765 EQKFGVTHKEKIKKIKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFV 824 Query: 429 AT-QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVER 485 + + I + +V L + + + R H ++ E Sbjct: 825 TKFDPETIRKAITAEISRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHEL 884 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + E DVLV ++ G+D+P + + I A G + L Q GR R+ Sbjct: 885 EKAMLAFFHHEIDVLVCTAIVESGMDVPRANTMFIDTAHLFGLSQ----LYQLRGRVGRS 940 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 Y + P K + + ++ R K + N G G+ D+ G Sbjct: 941 KTR---AYCYLMMPRNHK-LDKEQQERLKIIQENTALG---SGIKIAQYDLELRGSGNIL 993 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ---HAQNLEFEEAAQIRD-Q 661 + + ++V +M L + + E +G ++ L + A I D Sbjct: 994 GEEQSG-------HVNSVGYEMYMDLLNEALAEAKGESVEDMDLDPELNLKIPALIPDAY 1046 Query: 662 LHQLRELF 669 + +R Sbjct: 1047 IKDIRIRL 1054 >UniRef50_C1N749 Exinuclease ABC subunits B and C-containing protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N749_9CHLO Length = 1800 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 173/475 (36%), Positives = 240/475 (50%), Gaps = 90/475 (18%) Query: 8 NSAFKPSGDQPEAIRRLEEGLEDGLAHQT-LLGVTGSGKTFTIANVIADLQRPT--MVLA 64 + F P+GDQP AI + D T L G TG+GKTF +ANVIA +P +V+ Sbjct: 115 RAPFAPAGDQPAAIADCARLVHDERRRFTCLRGATGTGKTFVVANVIASQPKPIPTLVVV 174 Query: 65 PNKTLAAQLYGEMKEFFPENA-VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123 PNKTLAAQ+ E++ + ++ VE FVS++ Y PE+Y S ++EK ++V++ +E +R Sbjct: 175 PNKTLAAQVARELRAYLRDSRHVELFVSHFSLYVPESY--SRGRYVEKRSAVDKDLEALR 232 Query: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVG----MIIDQRAILRRLAE- 178 ATKA+LE DVVVVASVS +YG+G P Y+ L G + Q A+ RRL E Sbjct: 233 HRATKALLESDDVVVVASVSCLYGMGMPSDYVDARLCFERGVPGLGVAGQDAVARRLTES 292 Query: 179 LQYA-----RNDQAFQRGTFRVRGEV---------IDIFPAESDDIALRVELFDE--EVE 222 L Y R D RG + +GE I ++P ++ + +++ + V Sbjct: 293 LLYEETKDARWDGVS-RGQWAWQGEADADVDGARRIAVWPPY-EEAPVEMDVAPDGSLVG 350 Query: 223 RLS---LFDPLTGQIVSTI---------------------------------------PR 240 +D + + + R Sbjct: 351 FGRMRSAYDADASYVEADVEADVAVAGKKKKKKTATRGTRRGDFVSAAADGEPLPPPPDR 410 Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 TI+P+ H++TP ER+ A E IK E+ AR L N +E RL QRT+ D+ ++ EL Sbjct: 411 VTIWPRQHHITPPERLAVAAEAIKAEMRARSAELRANGLQIEADRLEQRTKADVGLLREL 470 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLP-------------------ADGLLVVDESH 341 G+C G E+YSR L GR G PP TL DY D LLV DESH Sbjct: 471 GWCPGAEHYSRHLGGRDEGAPPVTLLDYFNFSTTAEAGGAFGGGDSKPKRDWLLVADESH 530 Query: 342 VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 V +PQ+ M+ GDR+RK LV G+RLPSALDNRPL F+EF P+ + VSATP Sbjct: 531 VMLPQLKAMHGGDRSRKLGLVAGGYRLPSALDNRPLTFDEFWERVPRALLVSATP 585 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 92/182 (50%), Positives = 121/182 (66%), Gaps = 2/182 (1%) Query: 408 VVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 +VD VVRP+G+LDP + V P A Q+ ++ +R+RAA E LV LTK EDL YL Sbjct: 656 MVDMVVRPSGVLDPPVTVLPRAKQLPEIARLVRERAARGEASLVCALTKADCEDLAGYLN 715 Query: 468 EHG-ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 G R +LHS++ +R + ++ L+ GE DVLVG LLREGLD+P+VSLVA+LDA Sbjct: 716 CLGGARADWLHSELTAPQRAKKLQRLQQGEIDVLVGAQLLREGLDLPQVSLVAVLDAGVP 775 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGD-KITPSMAKAIGETERRREKQQKYNEEHGIT 585 GF+RS RSLIQ GRAARN G+ + D T +M +AI E +RRR KQ +N +HGIT Sbjct: 776 GFMRSSRSLIQMHGRAARNARGECYFFADEPYTEAMTEAIDEIDRRRAKQSAHNAKHGIT 835 Query: 586 PQ 587 P+ Sbjct: 836 PK 837 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 100/661 (15%), Positives = 194/661 (29%), Gaps = 111/661 (16%) Query: 17 QPEAIRRLEEG-LEDGLA--HQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 + +A L EG ++ G L+G + A +P +++ P+ A L Sbjct: 36 EDQAFAGLVEGHVDAGEDADPSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDL 93 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 G+++ ++ + A + + +T + S R+ + Sbjct: 94 VGDLRSWYDGD-----------PNEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHP 142 Query: 134 RD--------VVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + ++V V ++ + L G I ++ L Y R D Sbjct: 143 QSDSEMFGPIRILVMPVRSLIQPVVAGIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVD 202 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTIY 244 RG F VRG +ID+F ++ +R+E F +E++ + F + I Sbjct: 203 LVMDRGEFAVRGGIIDVFVP-TEPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWAT 261 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P +A I + LE + Sbjct: 262 PCRELQLTEGIRERAQSLIGQ---------------------IPNADDLLESIANAIPQE 300 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT---IPQIGGMYRGDRARKETL 361 G+E+ L LP D ++++ + + + A + Sbjct: 301 GMESLIPALVDDLEPVSS-----MLPRDCIVMLFDPERLRRAVDDLMKTANEFLATSWHV 355 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 G P+ FE L + T N+EL K G VDQ + +D Sbjct: 356 AASG-----HGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTVDQSLPGHVQIDA 410 Query: 422 II--EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSD 479 + ++ + +D L E+ ++ + V++T + L L E G +H D Sbjct: 411 VAPQDLHGSGEKAEDHLGELIRK---DYAVVITAAAQGTLSRLKRMLNEIG----VVHFD 463 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 R + + + D G + Sbjct: 464 ---TIRSQAQDGFIDHAS------------------KTALLTERDLTGRTSVAAGV---- 498 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 + AR K+I + R + ++ G N+ + L + Sbjct: 499 -KTAR-KRRKSIDLMELKPGDFVVHEQHGIGRFIEMRQRTT-----GSGKNQATREYLVI 551 Query: 600 GQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA----------LQQKIHELEGLMMQHAQN 649 +K A P + D V + + Q + + + + AQN Sbjct: 552 EYAPSKRNAPPDKLFIPTDQLDQVSKYIGAEIPKLNKLGGSDWAQTKAKAKKHVHEIAQN 611 Query: 650 L 650 L Sbjct: 612 L 612 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 128/425 (30%), Gaps = 40/425 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + + + Q Q E G+ Sbjct: 665 PMDRLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFE--GFPV 722 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 + SRF S + E L D + VV +H + + + Sbjct: 723 NVRAMSRFQSTKEINETIKGLAD----GTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRF 778 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + +SATP LE + + + T D + Sbjct: 779 GVEAKETLKAV--------RTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPV 830 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 + V D + + IR+ +V E+ + L++ R H + Sbjct: 831 LTYVGAYEDAQVTAAIRRELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMG 890 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + +IIRD + DVL+ ++ GLD+ + + + AD+ G + + + Sbjct: 891 RKQLDQIIRDFWHRDIDVLLCTTIVETGLDISNANTLIVDRADRFGLSQ-----LHQLRG 945 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 +A Y +K + E R N G G + + D+ G Sbjct: 946 RVGRGRDRAYAYF---LYDPSKPMTEQSHERLVTIAQNTALG---SGFDVAMKDLELRGT 999 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEFEEAAQ 657 + + V D+ + + + I + + + +L E A+ Sbjct: 1000 GNLLGDEQSG-------HIEGVGFDLYVRMVSEAIEDYKDPERTEPVAVTIDLPIE-ASI 1051 Query: 658 IRDQL 662 D + Sbjct: 1052 PVDYI 1056 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 80/640 (12%), Positives = 199/640 (31%), Gaps = 73/640 (11%) Query: 14 SGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQL 73 ++ + ++E+ + + + GK + + + + + K Sbjct: 4 IFEKLDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQK------ 57 Query: 74 YGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER 133 + E+ + + + + + + + ++ E R + E Sbjct: 58 ----------SKSEWEKRFKNLFDKVIVLQERENPLINSFAKSKDSEIQRAEEFVRIFEE 107 Query: 134 RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTF 193 V++ S + + L L + L L Y R ++G F Sbjct: 108 GFDVLILSPQNLLEKY--SDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQF 165 Query: 194 RVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPR 253 +G ++DI+P S +R+E F + ++ + FD T + + IY + Sbjct: 166 SQKGGIVDIYPIFS-KYPVRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSI 224 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 + +++I + + L + + E+ ++ L Sbjct: 225 D-FSDGIKKIVADFKKLQNKLKGDARKNLEESFKDVIDGAELKIDRL------------- 270 Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALD 373 + ++FD D +++DE + + L+E G+ L Sbjct: 271 -YPYYYQNFRSIFDIF-GDCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLEKGYVLTKMAG 328 Query: 374 NRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVD 433 ++ E L+ I + + + V+ + + E+ Q + Sbjct: 329 CYFKVYDILEKLSSSIILQTF----------AQSIKEIQVKDIFSFNNLREIPSYNGQKE 378 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ +I+ + + V ++ EDL LE+ + E++ D R Sbjct: 379 LLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEF---------NKADEVLTD-R 428 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILY 553 G V + + +G+++ + V + + + + R + K Y Sbjct: 429 QG---VYLLPRSVEKGIEIQNLKWVCLS---FFNVEKKKGKDV-----KKRPKSKKETFY 477 Query: 554 GDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK 613 T K R K+ IT +G+ K+ + + + Sbjct: 478 ----TIEDLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDV 533 Query: 614 SRPIVEPDNVPMDMSP---KALQQKIHELEGLMMQHAQNL 650 + D+ +S Q++ ++ + A+++ Sbjct: 534 IEKYIGTDDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDI 573 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 135/423 (31%), Gaps = 38/423 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q ++ M + + Sbjct: 626 PMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHYMTFVQRMKD--FPI 683 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 IE SR + L + ++ +H + + ++ Sbjct: 684 TIEVLSRL----KSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGLLIIDEEHKF 739 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + ++ATP L + + D + D Sbjct: 740 GVEHKEKIKKL--------KENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFPV 791 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH---GERVRYLHSDI 480 V + ++ E I + + +V + E++ L+ ++ Y H + Sbjct: 792 QTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQM 851 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 D + E++ D G++DVLV ++ G+DMP V+ + + DAD+ G + L Q G Sbjct: 852 DERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQ----LYQLRG 907 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y T K + E +R K E G G + D+ G Sbjct: 908 RVGRSNK---LAYAYF-TFRKDKVLSEEAAKRLSAIKEFTELG---SGFKIAMRDLEIRG 960 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL--MMQHAQNLEFEEAAQI 658 K + + V DM + L ++I L+G + ++ A I Sbjct: 961 AGSIVGKLQ-------HGHINAVGYDMYIRLLSEEIRRLKGEEIQPEIEPQIDIRVNAYI 1013 Query: 659 RDQ 661 + Sbjct: 1014 SSE 1016 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 93/619 (15%), Positives = 196/619 (31%), Gaps = 92/619 (14%) Query: 48 TIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDT 107 + ++ P ++ + +AA+L EM F V + +P +T Sbjct: 21 FYCSELSAKNTPLVIFTKDSYVAARLQQEMLWFNQNLVV-------------SMIPDWET 67 Query: 108 FIEKDASVNEHIEQMRLSATKAMLERR-DVVVVASVSAIYGLGDPDLYLKMMLHLTVGMI 166 S + + RL + + ++ D++++ + SA+ L + + G Sbjct: 68 LPYDSVSPHPDLISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQK 127 Query: 167 IDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSL 226 +D ++ L E Y + F G F VRG +ID+FP S I R++ FD E+E + Sbjct: 128 VDLESLKMVLIENGYINVQKVFHPGEFAVRGGLIDLFPMGS-TIPYRIDFFDTEIESIKT 186 Query: 227 FDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 FD T + + + I P I + +E + Sbjct: 187 FDVETQKSIYPTNKIEILPARECPLTELSIETFRKNYRERFSGDPSK------------- 233 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 ++ +G+E Y + T+FDYLP D L+ D Sbjct: 234 ----SPIYTNISNKIPFAGMEWYLPLFY-----QETNTIFDYLPDDTLI--DVPFKLSSS 282 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 I + + R + E L P+ I + + + +L + Sbjct: 283 IDHYWLDAQTRFKMYA---------------YDIERPILNPEEIMMDSVKFHQDLNRFKN 327 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 D V L I+ + + D +++ ++++++ + E + + L Sbjct: 328 LNFD--VIDNPLPKITIDYKDGYKNIADYINQC------PKKIIISAESLGRRETIHKML 379 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 E + E + I+ D L+ + L+EG + + D Sbjct: 380 TECDLS-------LKRSESINILDP----VIDHLLIQSPLKEGF--SDEYFEVFTEYDLF 426 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 I + I + +E HG+ Sbjct: 427 ------PDFIHQ-----------EKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGR 469 Query: 587 QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH 646 ++ + ++ + + T K P+ + +++ +H+L + Sbjct: 470 YQGLVQLDMLGSINEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEK 529 Query: 647 AQNLEFEEAAQIRDQLHQL 665 + ++ +L L Sbjct: 530 EKRKALKQVYDTAAELLNL 548 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 53/411 (12%), Positives = 129/411 (31%), Gaps = 37/411 (9%) Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 ++ + P + + ++ + + +Q Sbjct: 589 VIKDMESAR--PMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNF 646 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 ++ + + IE SRF + + + L + +V +H + + + Sbjct: 647 VDRFS--SFPVEIEEISRF----KSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNI 700 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 + +G R L + ++ATP L S + D + Sbjct: 701 GLIIVDEEHRFGVRQKEMLKKF--------KTNTDFLALTATPIPRTLSMSLEGLRDFSI 752 Query: 414 RPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE- 471 T + I+ + + + + + ++E L + Sbjct: 753 ISTPPQKRLSIKTMVKSFSEGIIKEALTREFNRGGQAYFLHNDVSSIYAISEKLTKIMPD 812 Query: 472 -RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +V H + E +++D F++L+ ++ G+D+P + + I +AD+ G + Sbjct: 813 AKVAIAHGQMKEKELERVMQDFHQQRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQ 872 Query: 531 SERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLN 590 L Q GR R+ + + + +++ ++R + +Y E+ G G Sbjct: 873 ----LHQLRGRVGRSHHQ---AFAYLLI-DENRSLTSKAKKRLEAIQYLEDLG---SGYF 921 Query: 591 KKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + D+ G + E + M K L + + L+ Sbjct: 922 LAMHDLEIRGAGEILGDQQSG-------EIHEIGFSMYLKMLNRAVTHLKN 965 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 78/476 (16%), Positives = 145/476 (30%), Gaps = 46/476 (9%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 + +A+++ + G+TG+ K+ +A R T ++ + Sbjct: 3 PLFDAIQTDKALQQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGES 62 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 +QL ++ P P +P+ D + + + RL Sbjct: 63 LSQLKSDLATLLP-------------AAPVLELPALDFVTFSVTAKSLELTAQRLDIYSR 109 Query: 130 MLERRDVVVVASVSAIYGLGDP-DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 +L V+V+A+ AI P + + + L G I+ +L L Y R DQ Sbjct: 110 LLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVD 169 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F RG +IDIFP + LR+ELF +E++ L FDP T + + + + I P Sbjct: 170 NVGQFSARGGIIDIFPL-NRPYPLRLELFGDEIDSLREFDPATQRSIGALDKADIMP--- 225 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 + E + + A V E ++ E + +++ Sbjct: 226 -IIEPEHSGKRTTVLSYLPADGCVVFDEPARVREAMAKLIKENPEIKRRVYTWPDIAAAA 284 Query: 309 ------YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 Y L + P P + + + + ++ + Sbjct: 285 QAFNVVYLSLLLQKTPYTEPGEIHSITAKGIAPFHRQMEMLVDELKAWLDRKLQPVIFMT 344 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 + + + T+ +GG P L + Sbjct: 345 NRDKAVHLQHNLTQEGVSAVFSEQLTTLVPGTVMIT-VGVLAGGF-----ELPHAKLAVL 398 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 E Q IR RAA +++ L+ V H Sbjct: 399 TEKDIFGRQK----KGIRPRAAKGQQITYF-----------RDLKVGDYVVHVNHG 439 Score = 208 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 29/295 (9%) Query: 383 EALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQ 441 + +SATP L S D + T + ++ V + + IR+ Sbjct: 695 WRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRR 754 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDV 499 +V + + + L E R H + ++ D G +D+ Sbjct: 755 ELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSEDRLERVMLDFYEGNYDI 814 Query: 500 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITP 559 LV +++ GLD+P + + + DADK G + L Q GR R A Y T Sbjct: 815 LVCTSIIESGLDVPNANTIIVYDADKFGLAQ----LYQMRGRVGRTHR-MAYAYF---TY 866 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVE 619 K + E +R + K E G G + D+ G + Sbjct: 867 QRDKVLTEVAEKRLQAIKEFAELG---AGFKIAMRDLEIRGAGNILGPQQ-------HGH 916 Query: 620 PDNVPMDMSPKALQQKIHELE-GLMMQHAQN--LEFEEAA-----QIRDQLHQLR 666 +V +M + L + + EL G ++Q LEF A I D +H++ Sbjct: 917 ILSVGFEMYCRLLDEAVQELRTGKVVQPPPEPVLEFNVDAYLSGDYISDAMHKIE 971 Score = 42.9 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 + + + + ++V V T ++ + + G V + E Sbjct: 582 FGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQHYQTFSSRFAGFGPVVDVISRFRSPKE 641 Query: 485 RMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 + + +R G+ DVL+G + LL + ++ L+ + + + G + E+ Sbjct: 642 QKATLAKVRAGQVDVLIGTHRLLNPDVQFKDLGLLIVDEEQRFGVAQKEKLKKWRTN--- 698 Query: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 +L + R + E Q + + + Sbjct: 699 -----IDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIR 753 Query: 604 AKTKAKGRGK--SRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + + G+ + D + +S +I G M + Sbjct: 754 RELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSE 797 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 80/505 (15%), Positives = 157/505 (31%), Gaps = 61/505 (12%) Query: 40 VTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + GS +A I + +V+AP A L E+ F Sbjct: 25 LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSE------------TGLSI 72 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIY-GLGDPDLYLKMM 158 +P + +S + + R +L+ V+V + S++ L + K Sbjct: 73 ELLPDLEILPYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKES 132 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L+VG + + I +L Y R + G F +RG +ID+F +R++ D Sbjct: 133 FTLSVGELFSMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLY-TNPIRIDFDD 191 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 E+++ + LFD + ++TI TI P HY ++ + Sbjct: 192 EKIDLIKLFDVDSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEW---- 247 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG-LLVV 337 + G+ NY E +++DY L V Sbjct: 248 -------------PLYNFIETYAESHGVYNYLPLF-----FESMSSIWDYCKPGTELFCV 289 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + I + ++ L + + F A P Sbjct: 290 GDIKTPIKDYQKLINQRFNSQDNLSQPNLKPSELF---------FSATEQINKINEMHPI 340 Query: 398 NYELEKS-GGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 N + +K + + T L+P+ + +D ++ + + + ++L++ +K Sbjct: 341 NLQHQKCWKSHDHNSINFDTRPLEPLTA--FKTSSMDKIIHGLLETSTN--KILLSAGSK 396 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 + L E R R+ + V V + E + Sbjct: 397 NRIAFIENQLREFSIASR----------RVSNWNEFLERRAGVFVTEKSISESFITAKSG 446 Query: 517 LVAILDADKEGFLRSERSLIQTIGR 541 + I + + G S R G+ Sbjct: 447 IAVIGEIELFGRRSSTRKYRSPAGK 471 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 23/276 (8%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + + ++ATP L + G++ D + T I + Sbjct: 737 EHRFGVRHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYI 796 Query: 429 ATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 + L+ E ++ + +VL E++ E + + + H + Sbjct: 797 SQWDKSLIHEACQREISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSL 856 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++ EFD+L+ +++ GLD+P + + I AD+ G + L Q GR R+ Sbjct: 857 ERVMMKFYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQ----LHQLRGRVGRS 912 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN-IA 604 Y + PS + R+R + + E+ G+ G D+ G I Sbjct: 913 ERQ---SYAYLMIPSKH-TLTNEGRQRLEAIEAIEDLGV---GFILATHDLEIRGAGEIL 965 Query: 605 KTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + G + + + L Q I L Sbjct: 966 GDEQSG--------QIQKIGFSLYKDMLAQAIDSLR 993 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 88/629 (13%), Positives = 196/629 (31%), Gaps = 83/629 (13%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + E ++ + + + + +A RP +VL N LA Q Y + F Sbjct: 16 KALEQIQKKKSPIAIS--STIQEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLS 73 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 E F + ++ + + + + ++ ++ + + +VV Sbjct: 74 EKECSLFGT-------------DESLRVEAIASSPELSAQQVDTLFSLQKHPNQIVVTCP 120 Query: 143 SAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 SA L P + + +HL + + + +L Y + Q +F +RG ++D Sbjct: 121 SAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLLASGYHQQAHVDQPLSFAIRGGIVD 180 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 ++ D +R+E FD ++E + FD + + TI I P + +I + Sbjct: 181 VYSINYD-HPIRLEFFDTQIESIRFFDENIQRTIGTIEEVEIVPASIVFFSFNQIGDIRK 239 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 I+++L V L++ +L+ + + FD M + Sbjct: 240 GIQQDLERNPNVFLQD-ELMTTIQAMEAHLFDKSMYPYYAFVPN---------------- 282 Query: 322 PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 L+DY+ L + DE + + + D + +L D L + Sbjct: 283 MAGLWDYMEDAELFISDE--ILVNDAIKRLKEDTISYIQEMAQENKLLPRFD---LWHDL 337 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 ++ Y + G+ + ++ L E R Sbjct: 338 ERSMPASRCYYGDSYGDPVSHIEEVYLPNE------------------------LLEKRI 373 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 + A +RV V L K+ + + E L+ R+L + L L E D Sbjct: 374 QIAQKQRVTVFVLNKKEIQRIREILDHEKIEYRFL-----KEKEEIEKEALYLYEAD--- 425 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 +G + + + + + GR I++ + Sbjct: 426 ----WSQGFFLADQEVAVYTARELF-------EVHHRKGRYENKFRNAEIIHAYQELEPK 474 Query: 562 AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPD 621 + + +E + + + + + + + K Sbjct: 475 DYVVHANYGVGQYMGIETKEINHIKRDFLRIIYKANSELLVPLE-QFRLVRKFVSREGIV 533 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + ++ +L+ + + A L Sbjct: 534 PKLNKLGSGDWEKTKTKLQKNVEEVATRL 562 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 58/421 (13%), Positives = 122/421 (28%), Gaps = 35/421 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A Q + Sbjct: 615 PMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNRYKDFA--- 671 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L + + + L + ++ +H + + + + Sbjct: 672 ---VRIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLVIDEEHRF 728 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + + +SATP L+ S V T L+ Sbjct: 729 GVEHKEKIKELRNGVD--------VLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSV 780 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 V + L+ I++ + +V + L++ R +H + Sbjct: 781 QTYVVEKNQALIVDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARIGVVHGKLG 840 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +I+ E D+LV ++ G+D+P V+ + I DA G + + Q GR Sbjct: 841 RDEIEDIMWRFNHQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQ----IYQMKGR 896 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y + P+ K + E ++R + K + G G + D+ G Sbjct: 897 VGRSNR---LAYAYLLIPNR-KQLSEVAQKRLQAVKEFAKLG---SGYKVAMRDLTIRGA 949 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 ++ D V +D + L+ I + + + Q+ Sbjct: 950 GDLLGSSQSGF-------IDTVGIDFYIEMLEAAIEAKRNHQPIQKKEPKVKNNIQVSSY 1002 Query: 662 L 662 + Sbjct: 1003 I 1003 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 98/634 (15%), Positives = 188/634 (29%), Gaps = 103/634 (16%) Query: 60 TMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHI 119 T++L P+ A +L ++ + V P +T + S Sbjct: 41 TVILTPSGRGAEELARDLSCWTRGVEV---------------FPDWETLPHERLSPRTDT 85 Query: 120 EQMRLSATKAMLERRD-------------------VVVVASVSAIYGLGDPDLYLKMMLH 160 R+ A + +V + A + + + Sbjct: 86 MARRIWALHRLTHPEAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTKILSYPLFK 145 Query: 161 LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEE 220 VG + + R LA L Y R + RG + +RG ++D+F A S +R+ELF +E Sbjct: 146 AQVGKAYGRDEMSRDLAALGYERTELVVTRGQYSLRGGIVDVFSAVS-PHPVRIELFGDE 204 Query: 221 VERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKL 280 ++ + F + + + P E + +L Sbjct: 205 IDSIRPFAVSDQRTFNQEFQSVTAPACREFLLDETARVHAASLAAQLP------------ 252 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + L + + Y G+E+ L G LF+ LP LV + Sbjct: 253 --------QAAEILNLAAQGIYSEGLESLGALL-----GAEMKPLFELLPPGARLVATDL 299 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS-ATPGNY 399 + + + + + PL+ L + VS A G Sbjct: 300 PRLEARAVELGETTAEF----LAASWSAAADGSEIPLEINTASFLDLDALRVSEAKAGMK 355 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMA 459 L S + P+ ++S IR+RA + V++ + M Sbjct: 356 TLRISPFATHESATTSGAETVPLPTTGATG-----IISTIRERAREHWTVVIAATSNGMV 410 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 + L L E+ + ER G+ V V + EG + E L+ Sbjct: 411 QRLHRLLAENDIPAQVSADLDAEPER--------SGKTWVTVA--PITEGFALAEAKLLV 460 Query: 520 ILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 I +A+ G R AR+ K L P+ + + + + Sbjct: 461 ISEAEALGK------------RQARHHEQKVKL------PTRRRKTIDPLSLSPGEYVVH 502 Query: 580 EEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL 639 +HGI K + G + + + + + +L + Sbjct: 503 AQHGIG--RFVKLEKRTIGKGNKATSREYVVLEYAPSQRQGSKDLLWVPTDSLDMLSKYV 560 Query: 640 EGLMMQHAQ--NLEFEEAAQ-IRDQLHQLRELFI 670 G ++ ++ +A Q R + + + Sbjct: 561 GGETPTLSKMGGTDWNKAKQKARKAVKDIARELV 594 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 67/456 (14%), Positives = 135/456 (29%), Gaps = 31/456 (6%) Query: 225 SLFDPLT--GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKL 280 F P T + + + P + + L E Sbjct: 606 HAFSPDTPWQRELEDSFEYVETPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVR 665 Query: 281 LEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + + Q + L +E + + + F + + D + Sbjct: 666 AAFKAVQDGKQVAVLAPTTLLVSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKADLA 725 Query: 341 HVTIPQIGGMY--RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 I + G + + R + L + + + +SATP Sbjct: 726 DGKIEVVVGTHALLSGKVRFKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIP 785 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKR 457 LE + + T + + V D + + IR+ + +V + Sbjct: 786 RTLEMAITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRREMLRDGQVFYVHNRVQ 845 Query: 458 MAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 + ++L+ R H + + +++ D EFDVLV ++ GLD+ Sbjct: 846 DIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNA 905 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I A++ G + + R G+ Y + P + ET R K Sbjct: 906 NTIIIDRAERMGLSQLHQL-------RGRVGRGRERGYAYFLYPG-GDTLSETAFERLKT 957 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 N G G+ D+ G N+ + G ++ D+ + + + Sbjct: 958 IGSNTSLG---AGMAIAQKDLEIRGAGNLLGGEQSG--------HIASIGFDLYVRMVGE 1006 Query: 635 KIHELEGLM--MQHAQNLEFEEAAQIRDQLHQLREL 668 + G A NLE A I + + + L Sbjct: 1007 AVAAYNGEEPAEDTAVNLEIPVDAYIPEDYLEAQSL 1042 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 98/643 (15%), Positives = 210/643 (32%), Gaps = 76/643 (11%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 TL V + F +A IA L + + ++ + L + P+ V F Sbjct: 16 KKITLSPVIDGTEGFILAE-IARLGLSLVYICSDERILINLKKILTLVVPDIRVIIF--- 71 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE----RRDVVVVASVSAIY-G 147 P+ D S + ++ RLS ++ + ++V+ +VSA+ Sbjct: 72 ----------PAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCR 121 Query: 148 LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAES 207 + L + ID ++ +L + R + ++ G + VRG ++D++ + Sbjct: 122 SVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEP-T 180 Query: 208 DDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEEL 267 +R++ F ++ L LFD T + + I F I + + + I + E Sbjct: 181 KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF 240 Query: 268 AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFD 327 + +++ G+E++ F + T+F Sbjct: 241 GTT-----------------TQEDPLYVAISQGRRYPGMEHWLPFFY-----QSMETIFP 278 Query: 328 YLPADGLLV---VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEA 384 YL ++ V E+ Q+ Y R + + + + + Sbjct: 279 YLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFD 338 Query: 385 LAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQ--------VDDLL 436 QT + + +++ + V + G V+ + +Q D L Sbjct: 339 ALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFL 398 Query: 437 SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGE 496 S + Q+A + +++ ++ + L +E HG + EI L+ Sbjct: 399 SHVAQQAQKGIKTIISASSQGALQHLIHLIESHGFKKI-----KKINTLTEINSLLKEEI 453 Query: 497 FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDK 556 V++ + +G + + + + + D G + R R N A + D Sbjct: 454 AAVIL---PINQGFETKHM--ILVTETDLLGK--------KIARRVVRKKNVHAQSFFDS 500 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGK-SR 615 I E ++ + I G +++ + SR Sbjct: 501 SNIEEGAIIVHAEH---GIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISR 557 Query: 616 PIVEPDNVPMD-MSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 E V +D + A + + L+ + AQ L A + Sbjct: 558 YSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR 600 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 90/277 (32%), Gaps = 21/277 (7%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 + + + + +SATP L+ + V + + ++ I + Sbjct: 756 EQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMPPINRIACRTSI 815 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDTVER 485 + ++ E + + + E +L+ ++ H + Sbjct: 816 SIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNL 875 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 + + G++DVL+ +++ GLD+P+ + + + AD G + L Q GR R+ Sbjct: 876 EDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQ----LYQLRGRVGRS 931 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 I + + ++R + + G D+ G Sbjct: 932 K----IASFALFLLPENRPLTAAAQKRLRILQ---SLNTLGAGFQLASYDLDIRGTGNLL 984 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 + + + ++ K L++ + ++G Sbjct: 985 GEEQSG-------HIREIGFELYQKMLEETVASIKGQ 1014 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 111/706 (15%), Positives = 210/706 (29%), Gaps = 97/706 (13%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANV-----IADLQRPTM 61 L F P+ +Q I + ++ L + + +A++ R + Sbjct: 39 LTDIFTPTNEQLFPIDKAQKRW--------LYPAYAAAGSLWLASLSDCPVANVANRLKV 90 Query: 62 VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQ 121 V+ ++ Q+ E+ + V P +T + S ++ I Sbjct: 91 VVTKDQNQLNQIETELAFCGVDAYV---------------FPDWETLTYDELSPHQDIVS 135 Query: 122 MRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180 R++ M + +++ S+ + P + L+VG I D LA Sbjct: 136 ERINLLTDM--PKQGILLISIQTLMQRMAPPSWLIGQHFDLSVGDIFDINQQREMLAAAG 193 Query: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240 Y D F+ G F VRG VIDIF LR++LFD E+E + F+P T + +ST Sbjct: 194 YRAVDNVFEPGEFAVRGSVIDIFAMG-QPFPLRLDLFDNEIETIRFFNPQTQRTLSTQTL 252 Query: 241 FTIYP--KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLE---------------- 282 + + + + +L K + + L Sbjct: 253 MDLVAGRADANSANQHDLTVESLSLLHKLPDVSKPITQFQILPAKEFPLDEGKETFRNNF 312 Query: 283 ---EQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDE 339 ++ R + + SG+E Y LF Y P D L ++DE Sbjct: 313 AAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLFFEIEDWSQNGHLFSYFPKDTLFIIDE 372 Query: 340 SHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNY 399 + R + + L P A + +S + Sbjct: 373 NTAEAQADYWSQIQRRYEERRHDIDKPIVEPTLLYLPSNSLNEMLNAYPRVILSQS---- 428 Query: 400 ELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER----------- 448 + + D L P PV+ Q + L E+ A+ Sbjct: 429 --DLAAADNTQSGKVKLPALMPP--ELPVSHQKAEPLLELLNYASAGWDDNTTEAALARP 484 Query: 449 VLVTTLTKRMAEDLTEYLE-EHGERV-----RYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 +LV T E L E + + ++L S++ ++ + V + Sbjct: 485 ILVVAETAGRREILLELFRGKLNVQTFDSLQQFLGSELYQQSLIKNTASASNTKPTVGLT 544 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMA 562 I + G + + L I + G R ++QT R + S Sbjct: 545 IAPIERGAVI-DQHLSIISETQLFG-----RQVLQTRRRR-------------QSDVSEE 585 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN 622 + E + + GI + + I A P+ Sbjct: 586 FLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYADDASIYVPVANLQL 645 Query: 623 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 668 + +H++ A+ E+ + +L ++ Sbjct: 646 ISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQAR 691 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 101/313 (32%), Gaps = 29/313 (9%) Query: 369 PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV 428 R + + ++ ++ATP L + + D + T + V Sbjct: 848 EHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMALTGMRDMSIIATPPARRLSIKTFV 907 Query: 429 ATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVER 485 + + L+ E I + +V + E + E + E R H ++ Sbjct: 908 MQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAENIRELVPEARVGVAHGQMNERGL 967 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 ++++ +F+VLV ++ G+D+P + + I ADK G + L Q GR R+ Sbjct: 968 EQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIERADKFGLAQ----LHQLRGRVGRS 1023 Query: 546 VNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 + Y + PS K + ++R E G D+ G Sbjct: 1024 HHQ---AYCYLLVPS-VKGLKGDAKKRLTAI---ERANTLGAGFMLASEDLEIRGAGEIL 1076 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE-GLMMQHAQNLEF-------EEAAQ 657 K + + + L++ ++ G L A Sbjct: 1077 GKQQSGN-------MQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDINLHSSALI 1129 Query: 658 IRDQLHQLRELFI 670 D ++ + + + Sbjct: 1130 PEDYVNDVPQRLL 1142 Score = 42.5 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 6/199 (3%) Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 H + + V A A ++ S Sbjct: 660 HKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQAKEGIHFKVETAQYELFASQFAFEET 719 Query: 401 LEKSGG-DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK--- 456 +++ D V ++ +D +I + + + +V V T Sbjct: 720 PDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVNSGYQVAVLVPTTLLA 779 Query: 457 -RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPE 514 + ++ + + RV L + +++ DL G+ D+++G + LL++ + Sbjct: 780 GQHEDNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIVIGTHKLLQKDVKFAN 839 Query: 515 VSLVAILDADKEGFLRSER 533 + L+ + + + G ER Sbjct: 840 LGLMIVDEEHRFGVRHKER 858 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 86/624 (13%), Positives = 191/624 (30%), Gaps = 78/624 (12%) Query: 32 LAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVS 91 L ++ S + +A+ + +++ N A +LY + E Sbjct: 19 KKESKLGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGE-------- 70 Query: 92 YYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSA-IYGLGD 150 + ++ + + + + ++ + + + +VV + +A I+ L Sbjct: 71 ------KVLFFGVEESLRVEAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPA 124 Query: 151 PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDI 210 P+++ + + + + + L E Y + Q + RG +ID++ + Sbjct: 125 PEVFQQHCISIKTNEETNYEQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYE-Y 183 Query: 211 ALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAAR 270 LR+E FD E++ + FD T + + I +I P + + E I + ELA Sbjct: 184 PLRIEFFDNEIDSIRFFDISTQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANV 243 Query: 271 RKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP 330 + + + LE DL+ + + +R R T+ DY+ Sbjct: 244 KGFTNASKEHLEAI-----VNEDLDAI------ANHSPEARLYKYRAFLNQQATIMDYV- 291 Query: 331 ADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 + ++V I + A ++ EA Sbjct: 292 KNACVIVSSEEEVKDSIKHAAEENIA-------------------YIQEMYQEANGLLKF 332 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL 450 + A V V L I+ + ++ + ++ ++ ++ + Sbjct: 333 SMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDINLERTMDQLITQSHSDK--V 390 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 + L + + + E L+E +R+E L+ G +L + L EG Sbjct: 391 LLCLDESEIKRVRELLDEKNVS----------YQRVEETDTLKNG-ISIL--HHRLIEGF 437 Query: 511 D-MPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETE 569 + E V + S A Sbjct: 438 TCISEQIHVY-TGKELFQSKHSISRYSNKFKEAE-----------VLHDYQELNVGDYVV 485 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDN---VPMD 626 + KY G++K + I G ++ + R V + Sbjct: 486 HHQHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVLLVPLEQFQLIRKFVSKEGAVPKLNK 545 Query: 627 MSPKALQQKIHELEGLMMQHAQNL 650 + ++ ++ + Q AQ L Sbjct: 546 LGSGEWEKTKRKVSEKIAQLAQRL 569 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 112/355 (31%), Gaps = 32/355 (9%) Query: 302 YCSGIENYSRFLSGRGPGEPPPTLFDYLPA---DGLLVVDESHVTIPQIGGMYRGDRARK 358 + ENY + P + + ++ +H + + Sbjct: 670 FTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLLVI 729 Query: 359 ETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + +G + + +SATP L+ S + T Sbjct: 730 DEEQRFGVEHKEKIKEF--------KNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPP 781 Query: 419 LDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRY 475 + ++ + + I++ A N +V + ++ L E + Sbjct: 782 QNRMPVQTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGV 841 Query: 476 LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSL 535 H + + +++ + VLV ++ G+D+P + + I +AD G + L Sbjct: 842 AHGQMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQ----L 897 Query: 536 IQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD 595 Q GR R+ + Y + S + + E +R K K + G G + D Sbjct: 898 YQIKGRVGRSDR---LAYAYLM-YSPQRQLSEIAMKRLKSIKEFTQLG---SGYKIAMRD 950 Query: 596 ILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + G + D V +DM + L I E +G+ + + L Sbjct: 951 LTIRGAGDMLGPQQAGF-------IDTVGIDMYIEMLNDAIMEEKGIKKEVKKEL 998 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 78/664 (11%), Positives = 193/664 (29%), Gaps = 117/664 (17%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + Q + ++R+ + L + + S + ++ + ++++ + Sbjct: 2 LYAKIEEILAQSKFMQRVLK-LPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQD 60 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 +A ++ ++ + Y+P + ++ S + I R+ Sbjct: 61 DIIAEDIWDDLCVLIGKENAH-------------YLPDYEILPYEERSPHYSIRATRMET 107 Query: 127 -TKAMLERRDVVVVASVSAIYGLGDPDLYL-KMMLHLTVGMIIDQRAILRRLAELQYARN 184 + + + S A+ +L + +LHL GM + +L L ++ Y Sbjct: 108 FLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQ 167 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVST-IPRFTI 243 Q + RG +IDIF +R+E + +E+ + +F T + + + TI Sbjct: 168 YQVSKVFQAAKRGGIIDIFSPPL-TNPVRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTI 226 Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + G+ Sbjct: 227 LPARELSLSD---------------------------------VDSGSPIIAKIRNQGFF 253 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDR-ARKETL 361 GIENY L T DY D +LV + + + ++ ++ Sbjct: 254 EGIENYYALLCNELQ-----TFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEA 308 Query: 362 VEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP 421 G + ++ L ++ + + +EL ++ P Sbjct: 309 KIQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMR----------AP 358 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481 + + L + R + ++ + A+ + + + Sbjct: 359 FASQPNFESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSI--------------- 403 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 G+ +L EG + + L D + +S R Sbjct: 404 -------------GKIPFTEFFGVLHEGFSLEDCHLNLWTDHEIFNRYKS-RRYTPR--- 446 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 + + I E + + +HGI K + + + Sbjct: 447 -----------------YAPGETIVNYEDLKPGDYVVHIDHGIGVFEGLKIIRLDGSDVE 489 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQ 661 + A P + V ++ ++ + +++L + + ++ I Sbjct: 490 CLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLGSSKWNNTKRKAAQQIELIAAD 549 Query: 662 LHQL 665 + +L Sbjct: 550 IVKL 553 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 56/402 (13%), Positives = 124/402 (30%), Gaps = 39/402 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A + Q + E + + Sbjct: 602 APMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHYRVFRERLAQYP-- 659 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 S L + + + +H + + + + Sbjct: 660 ----VKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLLIIDEEHR 715 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G R L + T+Y+SATP L + + + + T + + Sbjct: 716 FGVRHKEKLRALQSNVD--------TLYMSATPIPRTLNMALSKLKEISLMQTSPKERLP 767 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + + +++ + IR+ +V + E + L +VR++ H+ + Sbjct: 768 VRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQM 827 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + ++ D E+ VL+ ++ G+D+P + + I +A+ G + L Q G Sbjct: 828 PEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQ----LYQMRG 883 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + ++K R+R + ++ G + D+ G Sbjct: 884 RVGRSNRR---AYAYLL---ISKGTTTVARKRLEAL---TQYDYLGAGFQVALRDLELRG 934 Query: 601 QN-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 I TK G + + + L I +E Sbjct: 935 AGTILGTKQSGI--------IQAIGFNYYNRILANAIQAVEK 968 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 80/422 (18%), Positives = 151/422 (35%), Gaps = 49/422 (11%) Query: 57 QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVN 116 + +A + L + F PE V F P+ D AS Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTF-------------PAWDCLPYDRASPA 92 Query: 117 EHIEQMRLSATKAMLERR--DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAIL 173 RL+ A+ + V+V +V+A+ P +++ L G +D+ + Sbjct: 93 LRATSERLATLHALQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLA 152 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L Y R D ++G + VRG ++D+FPA + ALR++ F +E+E + FD + Sbjct: 153 AMLQANGYIRTDTVTEQGEYAVRGSLVDLFPAG-EPHALRLDFFGDEIESVRQFDATDQR 211 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + + FT+ P + + E I + +E A + Sbjct: 212 TIGPVDGFTLLPASEALLDEETIKRFRGRYRERFGA-----------------SATGDPI 254 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG----G 349 + +++ +G++++ R TLFD+L + L++ + + + Sbjct: 255 YQAVSDGRRLAGMDHWLPLFEERL-----ETLFDHLAPEDLILREAGSIKAAEARFEAIA 309 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 Y +R R T +R + E A+A + I++ E + V Sbjct: 310 DYHANRVRARTTDPGSYRPLEPGELYLAADEWRTAIADRPIHLVTPFAEPESARVLDLGV 369 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH 469 D G D E D ++ + +RV++ + + E L EH Sbjct: 370 D------GARDFAPERTQGVNIYDAVIEHVEALGKAGKRVVLASYSTGSRERFAGLLAEH 423 Query: 470 GE 471 G Sbjct: 424 GL 425 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 62/399 (15%), Positives = 121/399 (30%), Gaps = 36/399 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q + +E Sbjct: 671 PMDRLVCGDVGFGKTEVALRAAFVAALGGMQVALICPTTLLARQHYRNFVER------FH 724 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ LS D L + +V +H + + R + + Sbjct: 725 GMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIVIGTHALLAKGIAFKRLGLVIVDEEQRF 784 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G L + ++ATP L+ + + + V T +D + Sbjct: 785 GVTHKERLKAL--------KTDVHMLTLTATPIPRTLQMAMSGLRELSVIQTPPVDRLAV 836 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 VA ++ E + + + + T + D+ +YL + V Y+ H + Sbjct: 837 RTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLPDIEDYLRKEVPEVSYVVAHGQMA 896 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E + +FD+LV ++ GLD+P + + + AD+ G + L Q GR Sbjct: 897 AGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNRADRFGLAQ----LYQLRGR 952 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y T + ET +R + + G G D+ G Sbjct: 953 VGRSKTR---AYAYLTTGDRG--LTETAEKRLHILQNIDTLG---AGFQIASHDLDIRGA 1004 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + V ++ L++ I + + Sbjct: 1005 GNLLGDEQSG-------HIKEVGFELYQSMLEEAILDAK 1036 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 61/390 (15%), Positives = 120/390 (30%), Gaps = 57/390 (14%) Query: 47 FTIANVIADL--QRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 N+ L + +++AP+ A LY + + +A + Q Y Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSA---------WQQTLYYFSD 65 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMM-LHLTV 163 +T + + + R+ + +V+ S SA P +L +H V Sbjct: 66 WETLPYDHYTPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAV 125 Query: 164 GMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVER 223 G I Q+ ++ RL + Y ++G + RG ++D+FP + +R+E D+E++ Sbjct: 126 GDHIAQKTVINRLLQAGYQSTHFISEKGEYATRGNIVDLFPM-AAQTPIRLEWLDDEIDS 184 Query: 224 LSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEE 283 + FD T + + +I P V + ++ Sbjct: 185 IRFFDLKTQLTLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGE-------------- 230 Query: 284 QRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVT 343 + ++E G+E Y + L DY P++ + + Sbjct: 231 ---HIHQSGIYQSLSEGRTPQGLEYYLPLF-----FDETAHLLDYFPSNTCYIPADELAV 282 Query: 344 IPQIGGMYRGDRARKETLVEYGFRLPSALDNRP----------------------LKFEE 381 Q Y R ++ + L L F + Sbjct: 283 SLQNHDDYCHKRYQRLNHLRENSLLAPEQLWFSPQELQERLATLPTHMPKNRCTALPFSD 342 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 Q + AT L S + + Sbjct: 343 ETPRGQQWLEQFATAERAVLHFSSQGLREY 372 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 122/426 (28%), Gaps = 43/426 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ AA Q L+ + + Sbjct: 587 PMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIA--- 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +S + L + +V +H + + R + Sbjct: 644 ---VRIAAISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDE---- 696 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 + + + + ++ATP L + + D + T Sbjct: 697 ----EHRFGVKHKEALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIATAPAGRQSI 752 Query: 425 VRPVATQVDDLLSEI-RQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSDID 481 ++ ++ E + ++ + + L E + R H + Sbjct: 753 QTIISQYDPIVIEEACERELNRGGQIYFLHNDVSSIDRIARALSEQLPQARIAVAHGQLR 812 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 +I++D +D+LV ++ G+D+P + + I ADK G + L Q GR Sbjct: 813 ERALEKIMQDFYNRHYDLLVASTIIESGIDIPNANTIIINRADKLGLAQ----LHQLRGR 868 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y ITP+ + + +RR E G D+ G Sbjct: 869 VGRSHHQ---AYAYLITPAWQ-TLNKDAQRRLSA---FTELDSLGAGFLLASQDLEIRGA 921 Query: 602 N-IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE------GLMMQHAQNLEFEE 654 I + G + + M L++ L+ + ++ E Sbjct: 922 GEILGDEQSG--------QIQQIGMSYYLDLLERATAALKSGQDFNQEEIAVRYQIDIGE 973 Query: 655 AAQIRD 660 AA + D Sbjct: 974 AALLPD 979 >UniRef50_B3RIS6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RIS6_TRIAD Length = 654 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 104/319 (32%), Gaps = 37/319 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + S++ + + M + + + P Sbjct: 209 TPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCP----------- 257 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QT+ SAT + + D V G D I+EV + Sbjct: 258 ------RQTVMWSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKE 311 Query: 433 DDLLSEIRQRAAINER-VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D L + +E+ +V TK+ ++ L+ L G V +H D ER ++ + Sbjct: 312 DKLCKLLSDILRQDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSE 371 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 R G VL+ ++ GLD+ +V LV D F + + IGR AR+ G A Sbjct: 372 FRSGRIPVLIATDVAARGLDISDVKLVINYD-----FPNNSEDYVHRIGRTARSGKTGTA 426 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDI---LALGQNIAKTK 607 + + + RE Q N + ++ G++ + Sbjct: 427 YTFFTASNIRQSPNLIALL--REANQPINPDLIQLGDAARAEMAQKHRGKMRGRDRFYNR 484 Query: 608 AKGRGKSRPIVEPDNVPMD 626 + P + Sbjct: 485 DRNASNRYPYAKSKLSGSY 503 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 91/582 (15%), Positives = 186/582 (31%), Gaps = 67/582 (11%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVI-ADLQRPTMVLAP 65 +++ Q + + + G++GS K+F ++ A L +P +++ Sbjct: 1 MDNTLTKLLSQNPSFVDGLNAFQRKGKSV-IYGLSGSQKSFLLSQSFSAGLTKPVVIVVH 59 Query: 66 NKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLS 125 +K ++ F P V F P++D + + ++ ++ Sbjct: 60 DKDHKEMWERDLAFFMPNAPVLSF-------------PTTDHVDFTTVARSLEVQGAQMR 106 Query: 126 ATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 A + + VV+A+ + P LH + I++ L +L + Y R Sbjct: 107 ALALLAWQEPAVVIANAEEVTQYVVSPHYLKGQSLHFALNDAIERDVALEQLVTIGYERV 166 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 DQ QRG F VRG+++DI+P SD +R+E F +E++ L F + + I +T+ Sbjct: 167 DQVEQRGHFAVRGDILDIYPVNSD-HPIRIEFFGDEIDTLRFFSVENQRSIEQIESYTVT 225 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + + + + E ++ E L + + D + Sbjct: 226 P---FFLGKSDADST---LLSYVKEGTLIYDEPGRIQE--ALKKFLKEDPTHRKNHCDWN 277 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ + + + + ++ + + + D ++ + + Sbjct: 278 ELQRTVDARNQVAFTFMQQRSIGLTGFNPIGIQGKTMTSFERQIPLLT-DEIKQWHRLHH 336 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPG--NYELEKSGGDVVDQVVRPTGLLDPI 422 + R E S T + G + D P L + Sbjct: 337 QVVIVLNNQQRREGIERALEGEHIVFTHSDTWIAKPNTVIILNGLLTDGFELPNSHLVVV 396 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS---- 478 +E Q L R + + + T L V +H Sbjct: 397 VEGNIYGQQKRKL----RNKPKKGQEINYFTD-----------LTPGDYVVHSMHGIGKY 441 Query: 479 -DIDTVERMEIIRDLRLGEFDVLVGINLLREGLD---MPEVSLVAILDADKEGFLRSERS 534 + T+E I RD + G D +P +L K + Sbjct: 442 IGLKTIETEGIHRDYIE----------IAYAGTDKLFLPANNL---DQLQKYIGNEGDVP 488 Query: 535 LIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 I +G R K + K +A + E +RE + Sbjct: 489 RIHKMG--GR-DWAKVVTKAKKSIDDLADKLVEIYAQREITE 527 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 44/434 (10%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + Q Q L G Sbjct: 568 VPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQHFQTFLNRFAPFGVK 627 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 + N R S + + + + ++ +H + + + Sbjct: 628 VDVLNRFRTTSEKKQ------ILKGVEDGSIDILIGTHSLLNKKVVFKDLGMLVVDEEQR 681 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-I 422 +G A + +SATP L S V + V T + Sbjct: 682 FGVAQKEKWKE--------WASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERLP 733 Query: 423 IEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 ++ V ++ + I++ A +V + E LE G R H + Sbjct: 734 VQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESALPGLRYAVAHGQM 793 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + EI+ D G +DVL+ +++ GLD+P + + I DAD+ G + L Q Sbjct: 794 TGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQ----LYQMR- 848 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R + Y + K + E +R K + E G G + D+ G Sbjct: 849 --GRVGRSRRRAYAYFM-YRPDKILSEAAEKRLKAIEEFTELG---AGFKLAMRDLEIRG 902 Query: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQH------AQNLE--- 651 + +V M L++ I + + ++ A +LE Sbjct: 903 AGNLLGSQQHGN-------IASVGFGMYVSMLEEAIAKAQNKEVERDVSIDPAIDLEVDA 955 Query: 652 FEEAAQIRDQLHQL 665 F + A I+D ++ Sbjct: 956 FIDDAYIKDSARKI 969 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 109/662 (16%), Positives = 213/662 (32%), Gaps = 96/662 (14%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPN 66 L + + ++ + L+ G GV S + F +A A +PT+V+ Sbjct: 2 LIDSLTFTLEKSGCLDAFWGKLDAGEDGTL--GVASSARPFLVAARFAHRPQPTLVVVAG 59 Query: 67 KTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSA 126 + A + + + V F D + + R+ A Sbjct: 60 EDAAVAFSRSLAAYLGDERVMRFPERSD-------------YPFVPKPSDPAQVARRMEA 106 Query: 127 TKAMLERRDVVVVASVSAIYGLGDPD-LYLKMMLHLTVGMII------------DQRAIL 173 A+ R+VVVVAS A+ P + + + L+ G + + Sbjct: 107 VHALASGREVVVVASARALVRALPPAGSDVHVPVALSAGRELAAMPGAQAASVTEFEDFA 166 Query: 174 RRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQ 233 L E Y + GTF VRG ID+FP + +R++ F +E+E + P TGQ Sbjct: 167 HALEERGYRNTGELDGPGTFAVRGGTIDVFP-GNLVYPVRLDFFGDELEEIRRIVPTTGQ 225 Query: 234 IVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFD 293 + +P +IYP + + + +A ++++ A + Sbjct: 226 TIQALPDVSIYPVVEFSCSKRGLARARQKLERPAAT-----------------NPVLRDV 268 Query: 294 LEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRG 353 LE ++ G + +L TL DY+ L V+ E + Y Sbjct: 269 LEKLDGGLRFDGSDMLLPYLY-----ATTSTLGDYVRPGALSVLLEPRSLFDDMSHAYDD 323 Query: 354 DRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVV 413 G S++ L E + + ++ Sbjct: 324 ---------AAGRAKGSSIPVDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDEL----- 369 Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV 473 ++ VA D L +R + V+ + R +D+ +HG + Sbjct: 370 --------PVKRVEVAGHPDKLFGRLRSLVDTDYTVVFSASNFRARQDMKLAFVDHGLPI 421 Query: 474 -RYLHSDIDTVERMEII-RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 L ++ D E I R LR G +V+ L G+ +P+ L + +D +G Sbjct: 422 QETLDAEEDADELEGIAKRRLRRGVVNVVDVDVPL--GMIIPKAKLAIVSLSDTQGAS-- 477 Query: 532 ERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNK 591 R +R+V+ I + + + A +E ++ G + Sbjct: 478 -------TSRPSRHVDITEITFPYQPGDYVVHAAHGVAYFKELVRR-------DVDGTAR 523 Query: 592 KVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQ 648 + + + + + V P+ ++ + + + + A Sbjct: 524 DYLLLEYSEGDKLYVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAF 583 Query: 649 NL 650 +L Sbjct: 584 DL 585 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 35/409 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P V + ++ A + Q E G Sbjct: 638 PMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTTILAQQHYTNFKERCEPFGVR- 696 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + V+ +H + + + + + Sbjct: 697 -VEVLSRFRTPAQQAAA----LKGFQEGDVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRF 751 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G + N + + +SATP ++ S V D + T + + Sbjct: 752 GVGHKEQMKNLRESID--------VLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPV 803 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 EV D + IR+ A +V + R E+ + RV H + Sbjct: 804 EVHVGEWDPDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVAHGQMS 863 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D GE DVLV ++ G+D P + + I D+ + G + + Q GR Sbjct: 864 KEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQ----MYQLKGR 919 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P + E + EH G+ + D+ G Sbjct: 920 VGRSCTQ---AYAYFMFPEHMELTEEAA----ARLTALNEHTDLGSGMRIAMRDLEIRGA 972 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 + V D+ + L Q + ++ L Sbjct: 973 GSLLGAEQSGN-------MSAVGFDLFAQMLNQAVSATREGDLKAMDAL 1014 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 91/628 (14%), Positives = 194/628 (30%), Gaps = 105/628 (16%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA 100 + G + +A + R T+ + P+ QL E+ F + Sbjct: 12 SPPGLAWQLAQLA-TTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCL-----------W 59 Query: 101 YVPSSDTFIEKDASVNEHIEQMRLSATKAMLE---RRDVVVVASVSAIYGLGDPDLYLKM 157 +P+ + S + I R + +L + +++ A + + + P++ Sbjct: 60 RMPAWEVLPYDRVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAH 119 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 + + G ++D A+ RLAE + D+ +G F RG + D++PA +++ LR+++F Sbjct: 120 VWQIKPGDMLDIAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPA-TEETPLRIDMF 178 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 +++E + FDP + + ++ FT P + + + RK Sbjct: 179 GDDIESIRRFDPESQRSGESLSAFTSVPVREVILDQRGRECFAAAFRTRFPHLRK----- 233 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 L + GIE + L DYLP ++ Sbjct: 234 -------------HPMLSSVQAGRPHPGIEALLPL-----AYDNTARLSDYLPDGAVIYS 275 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 R + F ++ +++PQ +Y T Sbjct: 276 V------------------RDIDVRRSAFAEQVRGQFEMVRSSTEPSISPQELYAVDT-- 315 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 +S + +I+ + L + ++ ++ + Sbjct: 316 -AIRAESLSAARPAIRIEPAPS--LIDYADKKQPLHALRDALTKQLNHGWKIELIAHGLG 372 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 E + E E + D G I L G +P+ Sbjct: 373 QQERMLEACAE--------------------LSDTFAGAIS--SCIGYLDTGFALPQQKR 410 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD------KITPSMAKAIGETERR 571 + + + G Q + R R+ G AIL+ D ++ P + Sbjct: 411 LLLTGRELLG---------QRLPRKRRS--GPAILHADIFSSLAELKPGDPVVHEDHGVG 459 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 R + +E G + + D ++ + R E + + Sbjct: 460 RYHGLETIDEDGDLADFIKIEYAD----KAHVFVPVEELARLHRYTGEDAPALNKLGSEK 515 Query: 632 LQQKIHELEGLMMQHAQNLEFEEAAQIR 659 ++ ++ ++ A L EAA+ Sbjct: 516 WKRTRERVKRDLLAMAHELIDIEAARTS 543 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/348 (17%), Positives = 111/348 (31%), Gaps = 34/348 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + ++ +H + + +G + L + + Sbjct: 668 LAGGDIRIIVGTHRLLSDTFEFADLGMVIVDEEQRFGVKHKQKLKSLHASVDL------- 720 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINE 447 + ++ATP L ++ + + T + V++ + E IR+ Sbjct: 721 -LTLTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVSSFDPHIAREAIRRELYRGG 779 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + E +T L E H + E + G +LV + Sbjct: 780 QVYYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVCTTI 839 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD G + L Q GR R+ Y TP A+A+ Sbjct: 840 IESGLDVANANTLIVERADLLGLSQ----LHQIRGRVGRSHRQ---AYAYLFTPD-ARAM 891 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 R R + + E G G D+ G N+ + GR D + Sbjct: 892 TADARERLQAIAEHSELG---AGFLLARQDMEIRGAGNLLGAEQSGR--------IDEIG 940 Query: 625 MDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQIRDQLHQLRELF 669 +DM L + E G M + Q L+ A D + Q E Sbjct: 941 LDMYLDMLSDAVAEARGKMPKPKQPLDMHLGVNAILPPDYMPQAGERL 988 >UniRef50_Q8MZI3 CG10077, isoform A n=15 Tax=Eukaryota RepID=Q8MZI3_DROME Length = 818 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 117/362 (32%), Gaps = 37/362 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 + P ++ + R+ + I A E + +++ + + + Sbjct: 210 AYVLPAVVHINNQPRLERGDGPI----ALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIF 265 Query: 301 GYCSGIENYSRFLSGRG-PGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + G P L D+L + +++ + + M + Sbjct: 266 GGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQI 325 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K + Q + SAT + + + + + G L Sbjct: 326 R-----------------KIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSL 368 Query: 420 D--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHG 470 I++V ++ L+ + +A NE + ++ TK+ +++T + G Sbjct: 369 SLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQG 428 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 R +H D ER ++ R G +LV ++ GLD+ +V V D + Sbjct: 429 WRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYD-----YPS 483 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + + IGR R+ N G A + A + + R + + G Sbjct: 484 NSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGY 543 Query: 590 NK 591 NK Sbjct: 544 NK 545 >UniRef50_O97032 DjVLGB (Fragment) n=1 Tax=Dugesia japonica RepID=O97032_DUGJA Length = 781 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 68/391 (17%), Positives = 128/391 (32%), Gaps = 36/391 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 F I H V + + + ++L E + Sbjct: 229 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 288 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G + + + P L D++ + + + ++ + + M Sbjct: 289 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 348 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + +PS ++ QT+ SAT + + + + Sbjct: 349 DMGFEPQIRKIIEESNMPSGINR-------------QTLMFSATFPKEIQKLAADFLYNY 395 Query: 412 VVRPTGLL----DPIIEVRPVATQVDDL--LSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + G + D I + T V+ L L I A N +L+ TK+ A+ L + Sbjct: 396 IFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKKGADSLARF 455 Query: 466 LEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 L G V +H D VER + R G+ +LV + GLD+P V V D Sbjct: 456 LLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKHVINYDLPS 515 Query: 526 EGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGI 584 + + IGR R +G+A + ++A + + + E + I Sbjct: 516 D-----IEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLK---------EANQI 561 Query: 585 TPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 PQ L+ + D L + + K + R Sbjct: 562 VPQWLS-ALADELKR-NSTMGSNNKRHNQRR 590 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 82/649 (12%), Positives = 183/649 (28%), Gaps = 107/649 (16%) Query: 19 EAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMK 78 ++ L + G TG +++ + +++ P + A + ++ Sbjct: 9 NELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLA 68 Query: 79 EFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR---D 135 P +P + + S N H+ R+ A A+ +R Sbjct: 69 H---------------AAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAP 113 Query: 136 VVVVASVSAIYGLGDPDLYLKMMLH-LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 V + A+ P Y++ + VG I+ + +L + YAR D F Sbjct: 114 CAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFS 173 Query: 195 VRGEVIDIFPAE---SDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVT 251 +RGE++DI A + A R+ +ER+ + T ++ + T+Y + Sbjct: 174 LRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILW 233 Query: 252 PRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSR 311 ERI + +++ +E + G E + Sbjct: 234 SEERIAFLHQNLQK-----------------LSECPAHCVPCIEELTHRKTYEGEEMFYP 276 Query: 312 FLSGRGPGEPPPTLFDYL---PADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGF-- 366 E P + +Y P+ + + + R + Sbjct: 277 L-----CFERPTCVLEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQLAHEHV 331 Query: 367 --RLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 R ++ L F AL T+Y + +S D Sbjct: 332 PARWYPQPEHIVLDFSAVCALHLHTVYFTHFFPQLPACESICLASDPA------------ 379 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484 R + E+ + + V V +++ A + ++ Sbjct: 380 -RSFFGNIPYFKEELLRLSKDGWHVFVFAESEQQALRIRALVKG---------------- 422 Query: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544 DV V L G +P + ++ + + + G R +Q R Sbjct: 423 ------------CDVTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQ------R 464 Query: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 + + + + ++ + V++L + Sbjct: 465 ARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKT------AQSERDYVNLLYAQEETI 518 Query: 605 KTKAKGRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 + + + + + K+ + + ++ + AQ L Sbjct: 519 LIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKL 567 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 67/474 (14%), Positives = 138/474 (29%), Gaps = 65/474 (13%) Query: 230 LTGQI-VSTIPR--FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 +I + + + P V + ++ A + Sbjct: 602 DDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTPTTLLV 661 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + + IE SRF+ + L + ++ +H I + Sbjct: 662 EQHFRTICNRFKH--FPVRIEKLSRFVPKSEQKDILAKLAH----GDIDLIVGTHRLIQK 715 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + +G + L + + +SATP L Sbjct: 716 DVSFKDLGLMILDEEQRFGVQDKEKL--------KQMKTNVDCLSLSATPIPRTLHMGML 767 Query: 407 DVVDQVVRPTGLLDP-IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D + T IE + + + IR+ ++ E + Sbjct: 768 KIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCM 827 Query: 466 LEEHGER--VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L++ + HS + + E +I F +L+ ++ G+D+P + + I A Sbjct: 828 LQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRA 887 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 D G + L Q GR R+ Y + A+ + +R + + G Sbjct: 888 DMYGVSQ----LYQLRGRVGRSDK---KAYAYLLYYH-DVALSDLAIKRLQVISDFTDLG 939 Query: 584 ITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 G + D+ G N+ + G +V D+ + L++ I L+ Sbjct: 940 ---AGFKVALKDMEIRGVGNLLGKEQSGD--------IYSVGFDLYVQLLEEAIERLQHA 988 Query: 643 MMQ--------------------HAQNLEFEE-----AAQIRDQLHQLRELFIA 671 + A ++ E AA ++L ++R I Sbjct: 989 PNEQRIETVIDLNYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETIT 1042 >UniRef50_Q92841 Probable ATP-dependent RNA helicase DDX17 n=25 Tax=Bilateria RepID=DDX17_HUMAN Length = 650 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 96/300 (32%), Gaps = 36/300 (12%) Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + G G + P L D+L + + +++ + + Sbjct: 190 KCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEAD 249 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + K + QT+ SAT + + + Sbjct: 250 RMLDMGFEPQIR-----------------KIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 292 Query: 409 VDQVVRPTGLLD--------PIIEVR---PVATQVDDLLSEIRQRAAINERVLVTTLTKR 457 D G L+ I++V ++ L+ EI + ++ TKR Sbjct: 293 RDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKEN--KTIIFVETKR 350 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSL 517 +DLT + G +H D ER ++ + R G+ +L+ ++ GLD+ +V Sbjct: 351 RCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKF 410 Query: 518 VAILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 V D + S + IGR AR+ G A + A+ + + + Sbjct: 411 VINYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 465 >UniRef50_B7PA03 ATP-dependent helicase (DEAD box), putative n=1 Tax=Ixodes scapularis RepID=B7PA03_IXOSC Length = 685 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 113/347 (32%), Gaps = 37/347 (10%) Query: 245 PKTHYVTPRERIVQAMEEIKEEL--AARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 P + P + Q ++++ + A+R + + +L +F + Sbjct: 189 PMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFGALCPASVAV 248 Query: 303 CSGIENYSRFLSGRGPGEP---PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 + G P L D+L A + + +++ + + M + Sbjct: 249 VQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRMLDMGFEPQI 308 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 + R QT+ SAT + + D + G L Sbjct: 309 RKIVEQIRPDC-----------------QTLMWSATWPKEVRSLAEDFLKDYIQVNIGAL 351 Query: 420 DPIIEVRPV-------ATQVDDLLSEIRQRA--AINERVLVTTLTKRMAEDLTEYLEEHG 470 R V + ++ L E+ + + + L+ TK+ ++LT + +G Sbjct: 352 QLCANHRIVQIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNG 411 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 +H D ER ++ + R G +LV ++ GLD+ ++ V D + Sbjct: 412 WPSICIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYD-----YPH 466 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 I IGR AR+ G A + AK + + + Sbjct: 467 CSEDYIHRIGRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAI 513 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 89/534 (16%), Positives = 162/534 (30%), Gaps = 77/534 (14%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 +L+ L + + +++ + +++ A L E+++ Sbjct: 54 KLQGVLASVGEPRLHISAIDEARSWVARAIAEKS--VVVIVTATSREAQDLTAELRDMMG 111 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV------ 136 + A P+ +T + S RL + + D+ Sbjct: 112 DA--------------VAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPI 157 Query: 137 -VVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +VVA + L + + L D I RLAE+ Y D +RG F V Sbjct: 158 RIVVAPARSFIQPIMKGLGEREPIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAV 215 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIP--RFTIYPKTHYVTPR 253 RG V+DIFP+ + ++ +R EL+ +E+ L F + + +YP Sbjct: 216 RGGVVDIFPS-TAELPVRAELWGDEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDD 274 Query: 254 ERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFL 313 +A K+ L ++E G+E+ L Sbjct: 275 AVRARA------------------EKMARTHASNATLADALTKISEGVAVEGMESLIPVL 316 Query: 314 SGRGPGEPPPTLFDYLPA-DGLLVVDESHVTIPQIGGMY---RGDRARKETLVEYGFRLP 369 P + P+ ++V + + + G P Sbjct: 317 FDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESP 376 Query: 370 SALDNRPLKFEEFEAL-APQTIYVSATPGNYELEK---------SGGDVVDQVVRPTGLL 419 + + L Q+ Y S E G + T L Sbjct: 377 IDTAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLEL 436 Query: 420 D--PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477 D + + V+ +SE+ A R++ T LT A+ ++ E G V Sbjct: 437 DFSTGPQPKGKPGDVEKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTP-- 494 Query: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS----LVAILDADKEG 527 D D G+ V+ +L GL +P V L+ + + D G Sbjct: 495 -DADPQ------NPSAPGKATVIRA--VLHGGLVIPHVDDARPLLVVAETDFTG 539 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 63/401 (15%), Positives = 123/401 (30%), Gaps = 37/401 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + ++ A + + Q E M Sbjct: 715 VPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHFATFSERME----- 769 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 G R LS + + L + +V +H + + Sbjct: 770 -GFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLVIVDEEQR 828 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + + + +SATP LE S + D T D Sbjct: 829 FGVEHKEHIKALRSHVDM--------LTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHP 880 Query: 424 EVRPVATQVDD-LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDI 480 + V Q D + + IR+ + +V R E + +++ E R + H + Sbjct: 881 VLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQM 940 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 + + + E+DVLV ++ GLD+ + + + +A G + L Q G Sbjct: 941 NEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQ----LHQLRG 996 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ Y + P ++ + ET R N + G G+ + D+ G Sbjct: 997 RVGRSRERG---YAYFLYP-PSQTLTETSYDRLSTIAQNNDLG---AGMAVAMKDLEMRG 1049 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 N+ + G V D+ + + + + + Sbjct: 1050 AGNVLGAEQSG--------HIAGVGFDLYVRLVGEAVEAFK 1082 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 104/680 (15%), Positives = 202/680 (29%), Gaps = 96/680 (14%) Query: 17 QPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGE 76 EA++ +E GL+ G L V+ SG+T A A RPT+ + + A + Sbjct: 12 TAEALQAVEAGLDAGE--DVTLAVSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARS 69 Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV 136 + + V F D + ++ + ++ + R A ++ + Sbjct: 70 LAAYVGLAHVCRFPERKD-------------YPWREQAPDDAVVAQRCEALGRIVRGDNC 116 Query: 137 VVVASVSAIYGLGDP--DLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++VAS A+ P Y + VG I + +RL + Y A G FR Sbjct: 117 IMVASARALLRCVPPVESRYWEST-TFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFR 175 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 V G+ +++FPA+ + +R+E F +E++R+ TGQ + I+P E Sbjct: 176 VHGDTVEVFPAQ-EKAPVRIEFFGDEIDRIRRMVSSTGQTIGNEDSIEIFPCRELALTDE 234 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 + + + + LEM++ ++ + + Sbjct: 235 AVHNMHVAL-----------------YRASQDDSKLAALLEMVDARIVTPELDRFLPVMY 277 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARK----ETLVEYGFRLPS 370 + ++ L+V+ E Y AR ++ + Sbjct: 278 -----GQTVSPLAHVSGKALVVLSEPRSLFDDCLRAYEDIEARAGEAGIDRLDGLYVRAQ 332 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-- 428 LD + + +L V+A + +G D + V + Sbjct: 333 QLDFGAQQRLNYVSLIRAGGAVTAELKIEQPAIAGSDNRFMTRVQEVVGKRYACVFAIPD 392 Query: 429 ----------ATQVDDLLSEIRQRAAINERVLVTTLTKR----------MAEDLTEYLEE 468 E A N V+ R +D + E Sbjct: 393 RGARESMELTFGDEGITFEESLTAAPENAGVI--GERVRVAAADSADRAARQDAHAAIRE 450 Query: 469 HG---ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 R L + + + G + L +G+ +P+ +L AD Sbjct: 451 RKADALNARSLEAGAAQAAAGAAVPTISRGRVTFVDA--ALPQGVVVPDANLAVFSIADL 508 Query: 526 EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 + + AR+ I + T + +E G Sbjct: 509 NARMDA---------NRARSRRKVDITQITFPFKPGDYVVHATHGIALFSEIARQEVGGK 559 Query: 586 PQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + A G P+ + D + + P + ++ L Sbjct: 560 ERDY-------------FLLEYADGDKLYVPLEQVDRITRYVGPDGDKPRLTRLNTADWT 606 Query: 646 HAQNLEFEEAAQIRDQLHQL 665 A N + A ++ L L Sbjct: 607 RATNKARKNAKKLAFDLVDL 626 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 118/400 (29%), Gaps = 35/400 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ K + +++ T Q E E Sbjct: 676 PMDRLLCGDVGFGKTEVALRAAF----KCVDSGRQVMVLCPTTILAQQHYETFFERFAPF 731 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+E LS + V+ +H + + + Sbjct: 732 GLEVEV--LSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRF 789 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L N + + + +SATP ++ + V D + T Sbjct: 790 GVQHKEQLKNLREQID--------VLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPV 841 Query: 425 VRPVATQVDDLL-SEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDID 481 + V D++ + IR +V + + +D + E R H + Sbjct: 842 IVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMS 901 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ + + DVL+ ++ G+D + + I D+ + G + L Q GR Sbjct: 902 PREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQ----LYQLKGR 957 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P E + E G+ + D+ G Sbjct: 958 VGRSATQ---AYAYFMFPGELPLTEEAT----ARLTALSEFQDLGSGMRIAMRDLEIRGA 1010 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 + S +V D+ + L Q + E G Sbjct: 1011 GSLMGAEQHGNLS-------SVGFDLFTQMLGQAVAEARG 1043 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 92/497 (18%), Positives = 165/497 (33%), Gaps = 66/497 (13%) Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMM 158 + PS D +D ++ +++ R+ +L+ ++ +V ++ A+ P+ + Sbjct: 19 LFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTTLKALTEKIFSPESLKERT 78 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 + + R E+ Y R G F +RG ++DIF D +R+ELF Sbjct: 79 IEVRR--SASFYLSPERFVEMGYERTFTVQMPGEFSIRGGILDIFSPGYD-FPVRIELFG 135 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYP-------------KTHYVTPRERIVQAMEEIKE 265 E VE + FD T + + I P E + +A+ E ++ Sbjct: 136 EVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVRFTCENLEKALTEYRK 195 Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQF-----------------------DLEMMNELGY 302 + +L E L ++ + +R D++ + E Sbjct: 196 IRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEERSLPLVDIDEIEEGEL 255 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIPQIGGMYRGDRARKETL 361 E+ G + DYL V+ I ++ K Sbjct: 256 VVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDAVLYVPVEKIDRVHRYIGDPSQVKLDR 315 Query: 362 VEYG---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL 418 + G L ++ + E L + V T + E T Sbjct: 316 LNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEKFAETFPYIETPD 375 Query: 419 LDPIIEVR-----------------PVATQVDDLLSEIRQRAAINERVLVTTLT----KR 457 IE + + L + ++V V T ++ Sbjct: 376 QQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQ 435 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI-NLLREGLDMPEVS 516 E+ E LE G RV L S ER EI+ L+ GE DV++G LL E ++ ++ Sbjct: 436 HYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHALLNERVEFSDLG 495 Query: 517 LVAILDADKEGFLRSER 533 LV I + K G + E+ Sbjct: 496 LVIIDEEQKFGVEQKEK 512 Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 67/475 (14%), Positives = 149/475 (31%), Gaps = 59/475 (12%) Query: 168 DQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLF 227 D +R L EL R + VRG ++ P + A E F +E Sbjct: 331 DIEKRVRELVELYLKREE---------VRGTLLPGDPELEEKFA---ETFP-YIET---- 373 Query: 228 DPLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 P + + + + P + + + ++ A + Sbjct: 374 -PDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVL 432 Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 Q + E + G + + SR L R + + L + VV +H + Sbjct: 433 ARQHYENFKERLEPFGVRVELLDSSRTLRERKE------ILEGLKKGEIDVVIGTHALLN 486 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + + ++G L+ + +SATP L + Sbjct: 487 ERVEFSDLGLVIIDEEQKFGVEQKEKFKK--------MRLSVNVLSLSATPIPRTLHMAL 538 Query: 406 GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTE 464 + D V +A ++L+ + + +V+ ++ E Sbjct: 539 SGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLE 598 Query: 465 YLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 L+ R+ H + +++ + G DVL+ ++ G+D+P + + + D Sbjct: 599 NLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDD 658 Query: 523 ADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEH 582 A + G + L Q GR R+ + + P + ++ + + H Sbjct: 659 AHRYGLAQ----LYQLRGRVGRSDRR---AFAYFLYPK------GVPKSALERLRVLKAH 705 Query: 583 GITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 GL + D+ G ++ + G ++ + + + L++ + Sbjct: 706 TGPGSGLQIAMKDMEMRGIGDVLGLEQHGN--------IISIGLKLYNEILRETV 752 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 131/430 (30%), Gaps = 42/430 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I+ A + + Q ++ + + Sbjct: 589 MDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQQHYNTFIQRLKDFP---- 644 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 L + L + +V +H + + + +G Sbjct: 645 --VRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDLGLLIIDEEQRFG 702 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-IIE 424 + + + ++ATP L S + D V +D I+ Sbjct: 703 VTHKEKIKKMRENID--------VLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQ 754 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDT 482 + + + I + + +V D+ +++ H + Sbjct: 755 TYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVPGASVSFAHGQMSE 814 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E +I+ D GE DVLV ++ GLD+ + + I DAD+ G + L Q GR Sbjct: 815 RELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQ----LYQLRGRV 870 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + Y + K + E +R + + G G+ + D+ G Sbjct: 871 GRSSR---MAYAFLL-YRRDKLLKEVAEKRLAAIREFTDLG---SGIKIAMRDLEIRGAG 923 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ----HAQNL---EFEEA 655 +A+ V D+ K L + + EL+G + +L F Sbjct: 924 NLLGEAQSG-------HMAAVGYDLYCKMLNEAVKELKGEKEEDQFTTTMDLNIDAFIPE 976 Query: 656 AQIRDQLHQL 665 + I+++ +L Sbjct: 977 SYIKNEYQKL 986 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 61/319 (19%), Positives = 116/319 (36%), Gaps = 23/319 (7%) Query: 10 AFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTL 69 AF ++ + + + + G S KT + + + +V + ++ Sbjct: 3 AFLEPLEELADYQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYRVIVFS-SEEK 61 Query: 70 AAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKA 129 A Q Y E K P+ D + R+ K Sbjct: 62 AKQAYEEYKMLEEN---------------TFLYPAKDLLFYHADIKGAALTGKRMEVLKK 106 Query: 130 ML---ERRDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARND 185 + R V V+ + A + GL + + + + G +ID + + L L Y R Sbjct: 107 LTEKKNREPVTVITTADAFLDGLPSKEKLWESRIEIEAGAVIDFQKLQEELVHLGYERES 166 Query: 186 QAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP 245 Q G F VRG ++D++P +++I +R+EL+ +E++ + FD + + V + + IYP Sbjct: 167 QIEGPGQFAVRGGILDVYPL-TEEIPVRIELWGDEIDSIRSFDVESQRSVENMEKVVIYP 225 Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 T V +E+ V E +E E +L E ++ F + + Sbjct: 226 ATENVEKKEQAVSFSEYFPKE--ESLFFFDEPVRLQETLEAVEKEYFHSFESRKNAGMTE 283 Query: 306 IENYSRFLSGRGPGEPPPT 324 + R + E T Sbjct: 284 EADEIRVFQTKEIIEKFNT 302 Score = 68.7 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 129/410 (31%), Gaps = 61/410 (14%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 + EE+ R ++ + + + + +E M ++ EN E Sbjct: 186 LTEEIPVRIELWGDEIDSIRSFDVESQRS--VENMEKVVIYPATEN-------VEKKEQA 236 Query: 323 PTLFDYLPAD-GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 + +Y P + L DE + + + E+ G + E Sbjct: 237 VSFSEYFPKEESLFFFDEPVRLQETLEAVEKEYFHSFESRKNAGMTEEADEIRVFQTKEI 296 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQ 441 E + T G V D V P + L ++++ Sbjct: 297 IEKFNTRYGIGLTTLETRC---GGFKVRDVYSIQAAG------VNPYNNSFEMLTQDLKK 347 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 RV++ + ++ A+ L E L ++ Y +++R +R GE ++V Sbjct: 348 LKRQGYRVILVSGSRTRAKRLAEDLRDYDLSSFYS---------EDMVRTVRPGE--IMV 396 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSM 561 + EG + P + + I ++D G + +R + Sbjct: 397 VYGCVAEGYEYPMLKFMVISESDIFGKRKKKR----------------------RRKVYE 434 Query: 562 AKAIGETERRREKQQKYNEEHGITP-QGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 + I E + +E HG+ QG+ K VD + + + A G + Sbjct: 435 GQKIQEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTR-DYMKISYADGGILYILATQM 493 Query: 621 DNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 D + A K+++L ++ Q++ + + + + Sbjct: 494 DLIQKYAGADAKPPKLNKLGTPQWNKTKS-------QVKKAVQVIAQDLV 536 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 112/276 (40%), Gaps = 21/276 (7%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + P+ + L+E + G + + + K + + + ++L + Sbjct: 3 EELFKHPKLLE-LQEAFKQGD-PVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEES 60 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM- 130 +LY + F P P+ +T ++ + + R A + + Sbjct: 61 RLYHDFPFFS--------------SAPLLEFPAWETLPSENIAPSPDTVGARYKALRQVS 106 Query: 131 LERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 + ++++ + + + L P + + L L G +++RL E+ Y R+ A Sbjct: 107 ATFQPHIIISGLQACLQSLIPPQNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAAD 166 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F +RG +IDIFP S R+E + +++E + +FDP+ + + T+ I P Sbjct: 167 KGEFAIRGGIIDIFPVAS-PDPFRIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEM 225 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQR 285 ++ + I + L + V+ ++ LE++ Sbjct: 226 ELIQQ--SSKLSTILDYLGPQTIVIFDDLLALEDRY 259 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/428 (15%), Positives = 139/428 (32%), Gaps = 41/428 (9%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL-TQRTQFDLEMMNELGYCS 304 + + ++ A + L+ L Q + +E M+ Sbjct: 600 MDRLICGDVGYGKTEVAMRAAFKAVMDGHKQVALLVPTTVLAMQHYENFIERMSNFPVRI 659 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 G+ LS + + + + ++ +H I + + + + Sbjct: 660 GV------LSRFRTPKEIRETLEQVAKGSIDILIGTHRLISKDVVFHDLGLIIIDEEHRF 713 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L + + I +SATP L S D V T D + Sbjct: 714 GVKAKEHLKKIKMGVDC--------ITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPI 765 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 ++ D + + + + + + V + ++E + R + H + Sbjct: 766 TTIISEPGDLVFKNALLRELSRDGQAYVIHNRVETIFGVASKIKELLPQARVVVGHGQMS 825 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E + + G D+LV ++ G+D+P + + I AD+ G L Q GR Sbjct: 826 ADEIDSVFHAFKSGAADILVATTIIESGIDIPNANTILINRADQFGLA----DLYQLRGR 881 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R Y + P++ K++ + R+R E G+ + D+ G Sbjct: 882 VGRWNRR---AYAYFLVPNL-KSLPQLARKRLHAL---AEACGYGGGMKLAMHDLEIRGA 934 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQ 657 NI T+ G + K L++ I L+G + + E +A Sbjct: 935 GNILGTEQSG--------HVSAIGFHFYCKLLRRTIQTLQGELSAGMVETKLEFHYDACL 986 Query: 658 IRDQLHQL 665 D ++++ Sbjct: 987 PEDYVNEV 994 >UniRef50_P24782 ATP-dependent RNA helicase dbp2 n=63 Tax=Eukaryota RepID=DBP2_SCHPO Length = 550 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 106/304 (34%), Gaps = 17/304 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + G + R G P + D + + + + + Sbjct: 204 TRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI-RGVEICIATPGRLLDMLDS 262 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 R L E L + + K + QT+ SAT + + Sbjct: 263 NKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYL 322 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQ-RAAINERVLVTTLTKRMA 459 D + G LD I+EV A + L +I + + +VL+ T TKR+A Sbjct: 323 NDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVA 382 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +D+T +L + G +H D ER ++ + R G+ ++V ++ G+D+ ++ V Sbjct: 383 DDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVF 442 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D F + + IGR R G A Y A+ + ++ Sbjct: 443 NYD-----FPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497 Query: 579 NEEH 582 E Sbjct: 498 KLEE 501 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 128/369 (34%), Gaps = 27/369 (7%) Query: 18 PEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEM 77 I E L L G+ GS +F I + + + P +++ +K AA + ++ Sbjct: 6 SGLITEKEGVLPTETKTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDL 65 Query: 78 KEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM-LERRDV 136 + F E+ V ++ + Y + + + +R + + + + Sbjct: 66 ESFIGEDRVLFYPASYKK-------------PYQHSQTDNANILLRAEVLQRFGKKGKPL 112 Query: 137 VVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRV 195 +V+ AI+ K L+L G +I + L E + R D G F V Sbjct: 113 CIVSYPEAIFEKVIQKKTLEKNTLNLKQGELISLDFLNESLFEYGFKRVDFVSSPGEFSV 172 Query: 196 RGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRER 255 RG ++D+F + D R+E F EEVE + FD ++ + ++ +I P + Sbjct: 173 RGGIVDVFS-YAYDHPYRIEFFGEEVESIRTFDIVSQRSIAKQEEISIIPNVTQTDTLTK 231 Query: 256 IVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSG 315 ++ + + +E +FD +E + Sbjct: 232 RQDFFSFTDKKTTVLIRKPGVLKQKIESLYKEAVLKFDT-----------LEGEIAQIPP 280 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 LF L + ++ I Q+G + D A L+++ A + + Sbjct: 281 ENLYVQSKELFGALEKHQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQPAFNKK 340 Query: 376 PLKFEEFEA 384 E A Sbjct: 341 FPLIIERLA 349 >UniRef50_P17844 Probable ATP-dependent RNA helicase DDX5 n=52 Tax=Fungi/Metazoa group RepID=DDX5_HUMAN Length = 614 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 114/356 (32%), Gaps = 18/356 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + ++ + G P + D L + + I + Sbjct: 176 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD-LERGVEICIATPGRLIDFLEC 234 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 235 GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 294 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMA 459 D + G L+ I++V + + L+ + + + E + +V TKR Sbjct: 295 KDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRC 354 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++LT + G +H D ER ++ + + G+ +L+ ++ GLD+ +V V Sbjct: 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVI 414 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQKY 578 D + S I IGR AR+ G A + + R + Sbjct: 415 NYD-----YPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAIN- 468 Query: 579 NEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 + + + + + + + G+ L++ Sbjct: 469 PKLLQLVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKR 524 >UniRef50_Q1ECV0 LOC556764 protein (Fragment) n=21 Tax=Eukaryota RepID=Q1ECV0_DANRE Length = 519 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 106/298 (35%), Gaps = 17/298 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + + ++ + G + + G P + D L + + I + Sbjct: 177 TRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRD-LERGVEICIATPGRLIDFLEV 235 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 236 GKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFL 295 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMA 459 D V G L+ I++V + + L+ + + A E + ++ TK+ Sbjct: 296 QDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRC 355 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 ++LT + G +H D ER ++ + R G+ +L+ ++ GLD+ +V V Sbjct: 356 DELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVI 415 Query: 520 ILDADKEGFLRSERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREKQQ 576 D + S + IGR AR+ G A + A+ + + Sbjct: 416 NYD-----YPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAI 468 >UniRef50_P19109 ATP-dependent RNA helicase p62 n=11 Tax=Eukaryota RepID=DDX17_DROME Length = 719 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 104/289 (35%), Gaps = 34/289 (11%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G G + P L D+L A + +++ + + M + Sbjct: 390 GGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQI 449 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 K QT+ SAT + + + + + G L Sbjct: 450 R-----------------KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSL 492 Query: 420 D--------PIIEV---RPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 + +++V ++ LLS+I + ++++ TKR ++L ++ Sbjct: 493 ELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRS 552 Query: 469 HGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 G R +H D ER ++R+ R G+ ++LV ++ GLD+ + V D + Sbjct: 553 FGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFD-----Y 607 Query: 529 LRSERSLIQTIGRAARNV-NGKAILYGDKITPSMAKAIGETERRREKQQ 576 ++ I IGR R+ G + + K AKA+ + R ++ Sbjct: 608 PQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEI 656 >UniRef50_Q5ZT20 ATP-dependent RNA helicase n=4 Tax=Legionella pneumophila RepID=Q5ZT20_LEGPH Length = 589 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 66/352 (18%), Positives = 116/352 (32%), Gaps = 21/352 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV-EYGFRLPSALDNR 375 G+ L + +VV + I K ++ E L Sbjct: 110 CGGQEYGRQLKQLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIED 169 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR-------PTGLLDPIIEVRPV 428 E Q SAT + + + D ++ V Sbjct: 170 VETILEKLPEKKQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASV 229 Query: 429 ATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + D L+ + + V+V TK E++ E L++HG R +H DI R I Sbjct: 230 HQKPDALIRVL--EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERI 287 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN- 547 I + G D+LV ++ GLD+ V+ V D + + + IGR R Sbjct: 288 IAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDN-----ETYVHRIGRTGRAGRS 342 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 G IL+ + +I R+R ++ + +H I + + +I + Sbjct: 343 GVTILFVTPKESRLISSIERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYS 402 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHEL----EGLMMQHAQNLEFEEA 655 K + I E D +D++ ++ E M + A + E A Sbjct: 403 YKRIVEE-YIKEHDVSAVDVAAALALLLHKDMPWRKELNMPKAASAFKEERA 453 >UniRef50_C4QFR3 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma RepID=C4QFR3_SCHMA Length = 944 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 100/306 (32%), Gaps = 25/306 (8%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 ++++ +E R + G + P L D + + + Sbjct: 253 SSQIYDEARKFSYRSNIKPCVVYGGASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSL 312 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 + + M + + +P A QT+ SAT Sbjct: 313 EQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPAGKR-------------QTLMFSATF 359 Query: 397 GNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVATQ-VDDLLSEIRQRAAINERVL 450 + + + G + + I EV VA + D+L + Q + L Sbjct: 360 PKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVRLLQGKDPDGLAL 419 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR A+ L ++L + V +H D ER ++ R G +L+ + GL Sbjct: 420 VFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTPILIATAVAARGL 479 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETE 569 D+P V V D + + IGR R G A + + ++ + + E Sbjct: 480 DIPNVKHVINFDLPSD-----IEEYVHRIGRTGRMGQPGSATSFFSEKNQNVVRDLVELL 534 Query: 570 RRREKQ 575 R ++ Sbjct: 535 RESKQA 540 >UniRef50_B7EQA6 cDNA clone:J023079L21, full insert sequence n=5 Tax=Magnoliophyta RepID=B7EQA6_ORYSJ Length = 759 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 101/309 (32%), Gaps = 17/309 (5%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K L N++ + T+ + + G + + G P L D L Sbjct: 294 KRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRD-LER 352 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + + L E L + + K + QT+ Sbjct: 353 GADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTL 412 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDL--------LSEIRQR 442 +AT + + + + V G D ++ + + VD + L +I + Sbjct: 413 MFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRS 472 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVG 502 ++++ TKRM + L L +H D ER ++ + R G +LV Sbjct: 473 QEPGSKIIIFCSTKRMCDQLARNL-ARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVA 531 Query: 503 INLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSM 561 ++ GLD+ ++ +V D F + IGR R G A + Sbjct: 532 TDVAARGLDIKDIRVVVNYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKY 586 Query: 562 AKAIGETER 570 A + + Sbjct: 587 ASDLVKILE 595 >UniRef50_Q29P74 GA17489 n=7 Tax=Neoptera RepID=Q29P74_DROPS Length = 578 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 39/325 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG-----IENYSRFLSGRGPGE 320 E+ + V++ + L Q + +F E ++ G +N S + Sbjct: 232 EIGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQNESIMMGCHLLIA 291 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + D + + + M + + + + Sbjct: 292 TPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTMRAQ--------- 342 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVD 433 QT+ SAT +G + + + G++ I + Sbjct: 343 ------HQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRR 396 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ +I + +A +V TKR A+ L YL E +H D +R + +RD + Sbjct: 397 KLI-DILKESADG--TIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFK 453 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G+ VL+ ++ GLD+ V V D ++ + IGR R NG+A Sbjct: 454 TGKMKVLIATSVASRGLDIKNVKHVVNYDMP-----KTIDDYVHRIGRTGRVGNNGRATS 508 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + D P A+ + + Sbjct: 509 FFD---PDQDSALASDLVKILEGSD 530 >UniRef50_P24783 ATP-dependent RNA helicase DBP2 n=131 Tax=Eukaryota RepID=DBP2_YEAST Length = 546 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 104/299 (34%), Gaps = 17/299 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + G + R G + D L +V+ I + Sbjct: 195 TRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRD-LSRGSEIVIATPGRLIDMLEI 253 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K + QT+ SAT + + + Sbjct: 254 GKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYL 313 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMA 459 D + G L+ I+EV + D L + + N + L+ TKRM Sbjct: 314 NDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMC 373 Query: 460 EDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVA 519 +D+T+YL E G +H D D ER ++++ R G ++V ++ G+D+ ++ V Sbjct: 374 DDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVI 433 Query: 520 ILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQK 577 D + + IGR R G AI + + + + R + Sbjct: 434 NYDMP-----GNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIP 487 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 104/643 (16%), Positives = 204/643 (31%), Gaps = 65/643 (10%) Query: 41 TGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPE-NAVEYFVSYYDYYQPE 99 +G +A R +++A ++ + F PE + + VS + P Sbjct: 44 SGMATRCRLAAEAFTQGRTVVLVARDREEYNSARALLTLFTPELSLADKSVSEPQWNSPC 103 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV-SAIYGLGDPDLYLKMM 158 +P + RL+A + + R +V SV S + D + Sbjct: 104 LTLPPL------SQWQDRASWSARLAALYGLAQGRPRCIVCSVESLLLRHIPLDFFAARN 157 Query: 159 LHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD 218 L L G +L + E Y R + G RG+++DIFP +R+E F Sbjct: 158 LDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGEMARRGDILDIFPTGHVK-PVRLEFFG 216 Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 + ++ + +FD + + + + P + + + R + Sbjct: 217 DTLDEMRVFDAESQRSLQGCDELVLLPASPLALDAKSL--------AAARERCDRMFAEG 268 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ E + ++ L P D+LP D L ++ Sbjct: 269 RISEN--------------ECYSFKKSLDGGGLGLLPGSVLASPSLFEDWLPKDSLWLLP 314 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + R R + +E + L+ A V A P Sbjct: 315 GESDSADA----LRDGRLNLKERLEAADAPLPQPASLALRKSSQPAPWNTFQRVYAEPLV 370 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLV-TTLTKR 457 +E+ G D+ ++ + L P+ + Q L + +++ + ++++ + + Sbjct: 371 MGVEERGLDLPERPLHSFIDLFPLPGAQDRPWQ--HLAAGLKEWKSSRRQIVLSFSSGRS 428 Query: 458 MAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM----- 512 A+ L L E V L + ++ R G LV ++L G D+ Sbjct: 429 RAKFL--KLAEQDGIVPALRYAPEQRGLFALVSPFRSGAE--LVWDDVLVLGEDILYPKA 484 Query: 513 ---PEVSLVAILDADKEGFLRSERSLIQT---IGRAARNVNGKAILYGD---KITPSMAK 563 P VS D L+ L+ IGR A + + + S Sbjct: 485 EKTPRVSSRVFKGLDSFDDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSGRD 544 Query: 564 AIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNV 623 + R Q++ G+ P +D L +A + K+ + D V Sbjct: 545 KLYVPADRLGLIQRFKGTEGVEPA------LDRLGGAAWVAGKEKAR--KAIEKIAADLV 596 Query: 624 PMDMSPKALQQKIHELEGLM-MQHAQNLEFEEAAQIRDQLHQL 665 M K + ++ G + + FEE + + Sbjct: 597 EMYAYRKVTKGFRYDPPGELYHEFEATFGFEETPDQAKAIQDV 639 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 129/445 (28%), Gaps = 44/445 (9%) Query: 232 GQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQ 291 ++ + R P V + ++ A + Q Q Sbjct: 637 QDVLDDMDRPR--PMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQ 694 Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G LS P + A + ++ +H + + Sbjct: 695 TFRARLAGFPVNVG------LLSRFVPRPRQKEVLKAAAAGQIDILIGTHRILSSDVKLP 748 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + +G R L + ++ATP L+ S + + Sbjct: 749 NLTLLVLDEEQRFGVRHKEKLKAL--------KKNVDVLTLTATPIPRTLQLSMSGIREL 800 Query: 412 VVRPTGLLDPIIEVRPVATQVDDLLSEIR-QRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + T D V + D++L ++ + +V + E + EY+ Sbjct: 801 SIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREGQVFWVYNRVQGLERVAEYVRGLV 860 Query: 471 ERVRY--LHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF 528 R H + E + + GE DVLV +++ GLD P + + + A G Sbjct: 861 PDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQMFGL 920 Query: 529 LRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + L Q GR R+ Y + P + E R + + G Sbjct: 921 GQ----LYQLRGRVGRSDRQ---AYAFFVVPDAERLTAVAEER----LRIILDMDYLGAG 969 Query: 589 LNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + D+ G + + V +D+ + L++ + L+G Sbjct: 970 FQVAMEDLRLRGAGNILGEVQSG-------HMCRVGLDLYLEMLEEAVGRLKGTPESLVS 1022 Query: 649 NLEF-------EEAAQIRDQLHQLR 666 E A+ I D +LR Sbjct: 1023 ETELTLGLPAHIPASYIDDGRERLR 1047 >UniRef50_A2SQE1 DEAD/DEAH box helicase domain protein n=17 Tax=cellular organisms RepID=A2SQE1_METLZ Length = 656 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 125/397 (31%), Gaps = 19/397 (4%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 +NK ++ L+ + ++ E + + G+P L +V Sbjct: 70 DNKNVQALVLSPTRELAIQTAEEFSRLMKYKKGLN-VVPIYGGQPIERQLRALKGTVQVV 128 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 + I I D L E L QTI SAT Sbjct: 129 IGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSAT 188 Query: 396 PGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLSEIRQRAAIN--ERVL 450 L+ + D + P IE + + D L + + +N E L Sbjct: 189 MPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELAL 248 Query: 451 VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGL 510 V TKR +DL ++ G V LH D+ +R ++ R G DVL+ ++ G+ Sbjct: 249 VFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGI 308 Query: 511 DMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETE 569 D+ +V +V D + + IGR AR GK++ + + I Sbjct: 309 DVDDVDIVFNYDVP-----QDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRDIQRYA 363 Query: 570 RRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSP 629 + + + + + + + + E D S Sbjct: 364 KIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSESTSE 423 Query: 630 KALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 Q L + + +N AAQ +++ L+ Sbjct: 424 ITSIQVAAALLKMHLDSGKN-----AAQ-SEEIKPLQ 454 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/405 (15%), Positives = 116/405 (28%), Gaps = 37/405 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A Q E + + Sbjct: 552 PMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHFNTLRERFADYPIHT 611 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 L + L + VV +H + + + Sbjct: 612 A------LLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLIVIDEEQRF 665 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP-II 423 G + + + +SATP L + D + T + I Sbjct: 666 GVLQKEKWKEKFRFID--------VLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPI 717 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDID 481 E + I + +V R E + L+ ++ H + Sbjct: 718 ETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMK 777 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E E++ G+ DVL+ +++ GLD+P + + I AD G L Q GR Sbjct: 778 KHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLA----DLYQLRGR 833 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P I ++R K + EH G + D+ G Sbjct: 834 VGRSNQ---KAYAYLLLPRDL-FIQSDAKKRIKAMQ---EHSQLGTGFQIALRDLEIRGA 886 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 N+ T G ++ ++ K L++ I +++G + Sbjct: 887 GNLLGTSQSG--------HIASIGFELYCKLLKKAIQKIQGKETE 923 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 115/312 (36%), Gaps = 31/312 (9%) Query: 6 KLNSAFKPSGDQPEAIRRLEEGLEDG---LAHQTLLGVTGSGKTFTIANVIADLQRPTMV 62 ++ +++ D P L + L + + + SG++F +A+ + + P +V Sbjct: 27 EMTFSYEKWLDHP-----LLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRGPLLV 81 Query: 63 LAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQM 122 +A N ++ ++ + P +P + + + Sbjct: 82 IAENIKKTNEIALGLECW---------------GSPYLILPEVEPVPAESL-PDPTFLAE 125 Query: 123 RLSATKAMLERRDVVVVASVSAIYG-LGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQY 181 RLS ++L+ +++ + A+ L P+L + L L V D++A++ +L Y Sbjct: 126 RLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRKAVIEKLVTAGY 185 Query: 182 ARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRF 241 R D RG F VRG +ID F +S LR+E + L FDP+T + + + Sbjct: 186 ERVDSVDCRGQFAVRGAIIDTFCWDS-CYPLRMEWEGNRLISLRQFDPITQRSFKPLAQ- 243 Query: 242 TIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELG 301 E ++++ + + L + + + + L + G Sbjct: 244 ----AHLCFFNLEDMLKSGASLHDYLPQAIPTFWSKSPEIPIPDVGIHFESHLFLDTPKG 299 Query: 302 YCSGIENYSRFL 313 E + Sbjct: 300 DWFYQERRWQLF 311 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/236 (11%), Positives = 58/236 (24%), Gaps = 37/236 (15%) Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + L + + V++ + L E L G Sbjct: 303 YQERRWQLFLEALGRWIEKQWEVVIFVNNEGEESRLKEILNNQGISTE------------ 350 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 +L + L G PE L + DA+ G ++++ L+ R+ Sbjct: 351 -----------KILFSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILL-------RSQ 392 Query: 547 NGKAILYGDK--ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604 K ++ K+ I +G N ++V++ Q Sbjct: 393 QKNDYFRAPLGSDIFEQWKEGDIVVHLQKGICKFKGIKTI--EGTNTEMVELEFDQQAKL 450 Query: 605 KTKAKGRGKSRPIVEPDNVPM---DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQ 657 + + + + + A+ L A + Sbjct: 451 YVPIDQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAER 506 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/424 (14%), Positives = 131/424 (30%), Gaps = 37/424 (8%) Query: 246 KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSG 305 + + I+ A ++ + Q ++ + E Sbjct: 590 MDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQQHYNTFVQRLKEFP---- 645 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 L + + ++ +H + + + +G Sbjct: 646 --VRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKDLGLLIIDEEQRFG 703 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV 425 + + + ++ATP L S + D V + + Sbjct: 704 VTHKEKIKKLKENID--------VLTLTATPIPRTLHMSLIGIRDMSVLEEAPNERMPIQ 755 Query: 426 RPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE--RVRYLHSDIDT 482 V D+++ E I + A + +V D+ ++ V + H + Sbjct: 756 TYVMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKE 815 Query: 483 VERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 E +I+ D G+ DVLV ++ GLD+P + + I DAD+ G + L Q GR Sbjct: 816 RELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLSQ----LYQLRGRV 871 Query: 543 ARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQN 602 R+ + Y + K + E +R + + G G+ + D+ G Sbjct: 872 GRSNR---MAYAFLL-YQRDKLLKEVAEKRLSAIREFTDLG---SGIKIAMRDLEIRGAG 924 Query: 603 IAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG--LMMQHAQNLEFEEAAQIRD 660 +A+ + V D+ K L + + +L+G ++ A I + Sbjct: 925 NLLGEAQSG-------HMEAVGYDLYCKMLNEAVRQLKGGPEAETFTTLIDLNVDAYIPE 977 Query: 661 QLHQ 664 + Sbjct: 978 YYIK 981 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 113/298 (37%), Gaps = 25/298 (8%) Query: 21 IRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + + + G + K ++ + + +V + N+ A + Y E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYKLVVFS-NEEKAKKAYEEYLLF 72 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLER---RDVV 137 E P+ D + + R+ +A+ E+ V Sbjct: 73 GEE---------------TYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVT 117 Query: 138 VVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVR 196 V+ ++ A + G+ PD K +H+T +D + + L L Y R Q G F VR Sbjct: 118 VITTMDAFLDGIISPDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVR 177 Query: 197 GEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERI 256 G +ID+FP ++++ +R+EL+ +E++ + +FD + + + I TIYP + + Sbjct: 178 GGIIDVFPL-AEEMPVRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASENCFGNNGL 236 Query: 257 VQAMEEIKEELAARRKVLLENNKLLEEQRLTQR--TQFDLEMMNELGYCSGIENYSRF 312 V ++ E E ++L E + T+ + G E F Sbjct: 237 VSFLKYFPEN--ETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEEELRVF 292 >UniRef50_Q9SQV1 DEAD-box ATP-dependent RNA helicase 40 n=14 Tax=Eukaryota RepID=RH40_ARATH Length = 1088 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 19/315 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + +++ + T+ + + G + + G P L Sbjct: 498 RHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISC-TCLYGGAPKGPQLKELER 556 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + M + L E L + + K QT+ Sbjct: 557 GADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTL 616 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQ 441 +AT + + +V+ V G +D +EV P + + L +I + Sbjct: 617 MYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEK-ERRLEQILR 675 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 +V++ TKR+ + L + H +H D ER ++ R G+ VL+ Sbjct: 676 SQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLI 734 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 735 ATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWK 789 Query: 561 MAKAIGETERRREKQ 575 A + + +Q Sbjct: 790 YAPDLIKVLEGANQQ 804 >UniRef50_D1INE6 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=7 Tax=Eukaryota RepID=D1INE6_VITVI Length = 1180 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 102/315 (32%), Gaps = 19/315 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 K + N ++ + T+ + + G + G P L D L Sbjct: 85 KRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRD-LDR 143 Query: 332 DGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + + L E L + + K + QT+ Sbjct: 144 GADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 203 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQ 441 +AT + + +V+ V G +D +EV P + L +I + Sbjct: 204 MYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRL-EQILR 262 Query: 442 RAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++++ TK+M + L L +H D ER ++ R G VLV Sbjct: 263 SQEPGSKIIIFCSTKKMCDQLARNLT-RPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLV 321 Query: 502 GINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPS 560 ++ GLD+ ++ +V D F + IGR R G A + + Sbjct: 322 ATDVAARGLDIKDIRVVINYD-----FPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAK 376 Query: 561 MAKAIGETERRREKQ 575 A + + ++ Sbjct: 377 YASDLVKVLEGANQR 391 >UniRef50_P24346 Putative ATP-dependent RNA helicase an3 n=63 Tax=Eukaryota RepID=DDX3_XENLA Length = 697 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 99/304 (32%), Gaps = 25/304 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE R + G G + P L D + + + Sbjct: 322 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 381 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + +P QT+ SAT Sbjct: 382 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP-------------KGVRQTMMFSATFPK 428 Query: 399 YELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDD--LLSEIRQRAAINERVLVT 452 + + + + G + + I + ++D L ++ + LV Sbjct: 429 EIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVF 488 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK+ A+ L ++L G +H D +R E + R G+ +LV + GLD+ Sbjct: 489 VETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI 548 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V V D + + IGR R N G A + ++ ++ K + + Sbjct: 549 SNVKHVINFDLPSD-----IEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVE 603 Query: 572 REKQ 575 +++ Sbjct: 604 AKQE 607 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 102/664 (15%), Positives = 192/664 (28%), Gaps = 106/664 (15%) Query: 13 PSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRP--TMVLAPNKTLA 70 P +A ++ E L QT+ G+ G + ++ RP VL A Sbjct: 5 PLQRTLDAFKKKITPPEKRLISQTIPGIAREGFSLL-PGLLRRAGRPEILWVLTSTPEKA 63 Query: 71 AQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM 130 +L E++ D P + + S + I R+ A + Sbjct: 64 LRLVEEIRS---------APLLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHALDRL 114 Query: 131 LER--RDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAF 188 DVVV V+ + P L + L GM D ++++ L Y R Q Sbjct: 115 ASDTPPDVVVSPVVAVLRKTLSPPLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVPQVT 174 Query: 189 QRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTH 248 G F VRG ++D++ +R+E D E+ + FDP T + V + + P Sbjct: 175 APGEFSVRGALVDLYST-DRRRPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLPSHE 233 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIEN 308 ++TP L ++ ++ L + GIE Sbjct: 234 WITPS-----------------------------PSSLDTPSRDWIDRHLSLPFPPGIER 264 Query: 309 YSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRL 368 Y D L++VD+ + + + L Sbjct: 265 YLPSFFSETAAPVLSR------PDILILVDDWKAVLDRTSDWISRIEEGWKVLPAEERSF 318 Query: 369 PSALDNRPLKF--EEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVR 426 A D + + VS G P+ +D + Sbjct: 319 LPAPDAAFFLPKSRQEWESLLPCLTVSDEAPEGTPSLLGS-------VPSARIDRNLS-- 369 Query: 427 PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 L+SEI +R R ++ T+ + + LE ++ + Sbjct: 370 --------LISEI-ERQPREWRTVIFCRTRGQMSRIGDMLEA---------GELPYITSF 411 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + + G V + + E ++P ++ + D S R+ Sbjct: 412 DSLAS-GAGRLPVTLLQGDVEEAFELPLDQILVLSDTWLFKKPVSRPPF--------RSF 462 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKT 606 + +Y A G+ + G N G+ Sbjct: 463 STSTQVY---RRDRPTFADGDYVVHLHQGIGRFRGLQEVSVGAN--------RGEFAVIE 511 Query: 607 KAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLR 666 G + + D + P+ +I L G ++ ++R Q+ ++ Sbjct: 512 YLGGDRFYLSVDQMDQLLPYQGPEGSAPRIDRLGGKSWSQTKS-------RVRKQVEKIS 564 Query: 667 ELFI 670 + Sbjct: 565 ADLV 568 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 21/256 (8%) Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI-IEVRPVATQVDDLLSEIRQRAAIN 446 + +SATP L+ + + T I+ + + + I + A Sbjct: 749 DRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDRERIREVIDRELARE 808 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGIN 504 +V YL Y H + E ++ E +LV Sbjct: 809 GQVFFIHNRVSSIARWARYLAALFPEAGVAYAHGQMGEEEIEAVMGKFLRRESRILVSTT 868 Query: 505 LLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKA 564 ++ GLD+P + + I AD G L Q GR R Y ITPS +A Sbjct: 869 IVESGLDIPYANTILINRADMFGIAE----LYQLRGRVGRGGQQ---AYAYFITPSE-EA 920 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP 624 +GE R+R H G + D+ G + + V Sbjct: 921 LGEVARKRLHTL---TTHSGLGSGYQIAMRDLEIRGAGSLLGHQQ-------TGQVAMVG 970 Query: 625 MDMSPKALQQKIHELE 640 +D+ + +++ + L Sbjct: 971 LDLYLEMVEEAVAALS 986 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 6/136 (4%) Query: 414 RPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK----RMAEDLTEYLEEH 469 +D +I + + + + A ++V V T + E Sbjct: 616 ESPTPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHETFKNRFAGF 675 Query: 470 GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEVSLVAILDADKEGF 528 R+ L + E+ + LR GE D++VG LL ++ ++ L+ I + + G Sbjct: 676 PVRIESLSRMVSPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLIIDEEQRFGV 735 Query: 529 LRSERSLIQTIGRAAR 544 + +L R Sbjct: 736 RQK-ENLASRFPNVDR 750 >UniRef50_O00571 ATP-dependent RNA helicase DDX3X n=262 Tax=cellular organisms RepID=DDX3X_HUMAN Length = 662 Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 97/304 (31%), Gaps = 25/304 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE R + G G + P L D + + + Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 340 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + +P T+ SAT Sbjct: 341 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP-------------KGVRHTMMFSATFPK 387 Query: 399 YELEKSGGDVVDQVVRPTGLL----DPIIEVRPVATQVDD--LLSEIRQRAAINERVLVT 452 + + + + G + + I + + D L ++ + LV Sbjct: 388 EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVF 447 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TK+ A+ L ++L G +H D +R E + R G+ +LV + GLD+ Sbjct: 448 VETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI 507 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 V V D + + IGR R N G A + ++ ++ K + + Sbjct: 508 SNVKHVINFDLPSD-----IEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 562 Query: 572 REKQ 575 +++ Sbjct: 563 AKQE 566 >UniRef50_B3L9V8 Helicase, putative n=6 Tax=Alveolata RepID=B3L9V8_PLAKH Length = 528 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 115/344 (33%), Gaps = 35/344 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P ++ + + I LA R++ + + + + + + Sbjct: 166 AFILPAFVHILAQPSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIR---NTCAYG 222 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + Y+ P L D L + ++ +++ + + M + Sbjct: 223 GVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIR 282 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTG-- 417 K E QT+ SAT + + G Sbjct: 283 -----------------KIVEQIRPDRQTLMWSATWPKEVQSLARDLCKQQPIHVNVGSL 325 Query: 418 ------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGE 471 + I + ++ +L +++ N+R++V TK+ A+ +T+ L G Sbjct: 326 TLTACRRIKQEIYLIEEHEKIANLKLLLQRIFRDNDRIIVFVETKKNADFITKALRLDGV 385 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 +H D ER ++ D + G+ +L+ ++ GLD+ +V V D F Sbjct: 386 PALCIHGDKKQDERRWVLNDFKTGKSPILIATDVASRGLDIKDVKYVVNFD-----FPNQ 440 Query: 532 ERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + IGR R +G + + +A+ + + R E+ Sbjct: 441 IEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKILRESEQ 484 >UniRef50_P09052 ATP-dependent RNA helicase vasa n=39 Tax=Eumetazoa RepID=VASA_DROME Length = 661 Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 107/322 (33%), Gaps = 39/322 (12%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPG-----E 320 EL + V++ + L Q + +F E ++G G ++ G Sbjct: 315 ELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIA 374 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D++ + D V + + M + D R + Sbjct: 375 TPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE---------------DMRRIMTH 419 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-------DPIIEVRPVATQVD 433 QT+ SAT +G + + V G++ I + Sbjct: 420 VTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS 479 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 L+ EI A +V TKR A+ L +L E +H D +R + +RD + Sbjct: 480 KLI-EILSEQADG--TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFK 536 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G VL+ ++ GLD+ + V D + IGR R NG+A Sbjct: 537 NGSMKVLIATSVASRGLDIKNIKHVINYDMPS-----KIDDYVHRIGRTGRVGNNGRATS 591 Query: 553 YGDKITPSMAKAIGETERRREK 574 + D P +AI + + Sbjct: 592 FFD---PEKDRAIAADLVKILE 610 >UniRef50_A2QC74 ATP-dependent RNA helicase dbp2 n=35 Tax=Eukaryota RepID=DBP2_ASPNC Length = 565 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 106/303 (34%), Gaps = 17/303 (5%) Query: 286 LTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIP 345 + T+ + G + R G P + D L + + I Sbjct: 215 ILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRD-LSRGVEVCIATPGRLID 273 Query: 346 QIG-GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKS 404 + G R L E L + + K QT SAT + + Sbjct: 274 MLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLA 333 Query: 405 GGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLT 455 + D + G +D I+EV + D ++ + + + L+ T T Sbjct: 334 SDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMENRANKCLIFTGT 393 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR+A+++T +L + G +H D ER ++ + + G+ ++V ++ G+D+ ++ Sbjct: 394 KRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDI 453 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 + V D + + + IGR R G AI + A+ + ++ Sbjct: 454 THVLNYD-----YPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDLVTILTEAKQ 508 Query: 575 QQK 577 Q Sbjct: 509 QID 511 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 124/383 (32%), Gaps = 39/383 (10%) Query: 12 KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 + E I L++ L+ + + + K A + ++L + A Sbjct: 5 FEKMLKSERILALQKALQHTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEA 64 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAM- 130 +L+ ++ F P PS +T ++ + I R K + Sbjct: 65 RLFHDLSFF--------------TNCPTVDFPSWETLPSENVPPSPDIVGERYQLLKKIN 110 Query: 131 LERRDVVVVASV-SAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 +++ S+ + + L P + K+ L L ++++L + Y R A Sbjct: 111 SSSEPHIILTSLQACLQKLIAPSAFQKLYLTLKANESFFFDDLIQKLNLMGYQRKFIASD 170 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 +G F VRG +ID+FP S R+E + +++E + ++DP+ V + + I P Sbjct: 171 KGEFAVRGGIIDVFPV-SSPDPYRLEFWGDDLESIRIYDPIGQISVRAVEQIDIAPGLEL 229 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 + QA + L ++ ++ LE R + + + S IE + Sbjct: 230 ELLNQSNEQAS--FLDYLGPETLIIFDDLLALE-----DRYASLISLGANNKFFSSIEEF 282 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 L+ P + + + ++ + + Sbjct: 283 LHLLT---------------PYQKMFWSQKPIEELSEVKHLDSKQSGYYSQTTIFHKLKF 327 Query: 370 SALDNRPLKFEEFEALAPQTIYV 392 + T Y Sbjct: 328 QMFNRDWTVKRWRHPFNTITNYF 350 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 122/369 (33%), Gaps = 34/369 (9%) Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 LS + + + + +V +H I + + +G + Sbjct: 662 IGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDEEQRFGVKAK 721 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVA 429 L + + + +SATP L S D V T D + + Sbjct: 722 EHLKKIKIGVDC--------LTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIIT 773 Query: 430 TQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERM 486 D ++ + + + + + V ++ ++ + R L H + E Sbjct: 774 EPSDQIIQNALLRELSRDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEID 833 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + G+ D+LV ++ G+D+P + + I AD G +L Q GR R Sbjct: 834 ATFHAFKSGQADILVATTIVENGVDIPNANTILIDRADHFGLA----ALYQLRGRVGRWN 889 Query: 547 NGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAK 605 Y + P++ + + E R+R + E G+ + D+ G +I Sbjct: 890 RR---AYAYFLVPNL-RVMPELTRKRLQAL---SEASGYGSGMKVAMRDLEIRGAGDILG 942 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR---DQL 662 + G ++ + K L++ I L+G + + E A R D + Sbjct: 943 LEQSG--------HVSSIGFHLYCKMLKRTIQTLQGKLPSIVTETKIELAIDARLPEDYV 994 Query: 663 HQLRELFIA 671 +++ Sbjct: 995 NEVSLRMEV 1003 Score = 43.3 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 402 EKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-ERVLVTTLT----K 456 + + + Q + +D +I + + + + ++V V T Sbjct: 586 QLAAISSIKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAM 645 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGIN-LLREGLDMPEV 515 + ++ + + + L + E + + G D+++G + ++ E + ++ Sbjct: 646 QHFDNFLDRMANFPINIGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDL 705 Query: 516 SLVAILDADKEGFLRSERSLIQTIG 540 LV I + + G E IG Sbjct: 706 GLVIIDEEQRFGVKAKEHLKKIKIG 730 >UniRef50_Q5CQW8 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc) n=4 Tax=Apicomplexa RepID=Q5CQW8_CRYPV Length = 702 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 34/302 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + + M A + + +P +LD R Sbjct: 341 TPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQIREIVEDSEMPHSLDGR----- 395 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI------IEVRPVATQVDD 434 QT+ SAT + + + + + G + V Sbjct: 396 -------QTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEEDHKPR 448 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 LL ++ +V KR A+ + ++L + +H D ER +R R Sbjct: 449 LLVKLLLEQGEG-LTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALRLFRS 507 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILY 553 G+ +LV ++ GLD+P ++ V LD + + IGR R G A + Sbjct: 508 GQRPILVATDVAARGLDIPNITHVINLDMPC-----NIDDYVHRIGRTGRAGNTGLATSF 562 Query: 554 GDKITPSMAKAIGETERRREKQQKY---------NEEHGITPQGLNKKVVDILALGQNIA 604 ++ + + + + G NK V G Sbjct: 563 VNESNKPILRDLLAALEESGQDAPEWFQDMVKSCTASFGRYGNRFNKGGVSSSQRGNRGL 622 Query: 605 KT 606 + Sbjct: 623 HS 624 >UniRef50_B1CAG5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAG5_9FIRM Length = 510 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/447 (14%), Positives = 139/447 (31%), Gaps = 58/447 (12%) Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + F I P + + A I + E + + Sbjct: 48 SQTGTGKTIAFAI-PAIEKIDIEQEKPTAQVLI------ICPTRELAQQGYAEIKKLTKY 100 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM 350 ++++++ G S S+ P + D+L L + + V + + M Sbjct: 101 MPEIKVVDIYGGVSMERQISKLKKAHIVIGTPGRIKDHLKRRTLKLQNIKMVVLDEADEM 160 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 L + QT+ SAT + + + Sbjct: 161 -----------------LSMGFKEDIDTILKTAPDTRQTVLFSATMPPAIMNIIDTFLKN 203 Query: 411 QVVRPTGLLDPIIEVRPVA------TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 ++ + + ++L+ + + ++ TKRM +DLT+ Sbjct: 204 PLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGS-KLTIIFCNTKRMVDDLTK 262 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 +L ++G LH DI ER ++ + + + +LV ++ G+D+ +V V D Sbjct: 263 FLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGIDVKDVEYVINYDIP 322 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 ++ I IGR AR G +I + + + Sbjct: 323 -----QNSEYYIHRIGRTARGGKTGTSITMTN--NRKQVTDLKMILKETNS--------- 366 Query: 584 ITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLM 643 K +DI +K ++ +N D L+ + E + Sbjct: 367 ------KIKKLDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKD-LGYSENQI 419 Query: 644 MQHAQNLEFEEAAQIRDQLHQLRELFI 670 + A NL F + ++ + ++ ++ I Sbjct: 420 AKAALNLYF---GETKENIVKIEDISI 443 >UniRef50_C5LBR0 RNA helicase, putative n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBR0_9ALVE Length = 674 Score = 190 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 106/337 (31%), Gaps = 38/337 (11%) Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 R+ G G + + P L D+L + + +++ + + Sbjct: 310 RSSRITNTCVYGGTQRGPQARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEAD 369 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 M + K QT+ SAT + Sbjct: 370 RMLDMGFEPQVR-----------------KIVSQIRPDRQTLMWSATWPKEVQHLARDIC 412 Query: 409 VD-QVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRAAINE-----RVLVTTLT 455 + V+ G + +EV + + LL+ ++ +A + L+ T Sbjct: 413 NEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALMQAASAATGGGWTAKTLIFCDT 472 Query: 456 KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 KR A+D+T L G +H D ER ++ + G +++ ++ GLD+ +V Sbjct: 473 KRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAIMIATDVASRGLDVKDV 532 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREK 574 V D F + + IGR R +G A + +A+ + RE Sbjct: 533 KYVINYD-----FPGTIEDYVHRIGRTGRAGASGVAYSFFSPDKGKLARQLVNCL--REA 585 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGR 611 Q E ++ G+ K +G Sbjct: 586 NQSVPEALETIAFANDRSNSGGKGRGKGNYGGKGRGF 622 >UniRef50_A3FQ59 Putative uncharacterized protein n=1 Tax=Cryptosporidium parvum Iowa II RepID=A3FQ59_CRYPV Length = 586 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 35/311 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + +++ + + M + + Sbjct: 298 CPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLV----------------- 340 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD---------PIIEVRPVAT 430 QT+ SAT + + + + G +D + V + Sbjct: 341 SQIRPDRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESE 400 Query: 431 QVDDLLSEIRQRA-AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 + L + Q +VL+ TKR A+ LT+ L G +H D ER ++ Sbjct: 401 KKAKLKMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVL 460 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 + R G +++ ++ GLD+ +++ V D F I IGR R G Sbjct: 461 NEFRTGASPIMIATDVAARGLDIKDINFVINFD-----FPNQIEDYIHRIGRTGRAGATG 515 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 ++ + MA + + + +++ E ++PQ + N Sbjct: 516 VSLSFFTPDKYRMASDLIKVLKEAKQRVP-PELFKLSPQNKRMHPRNTGFRRNNPNSLPL 574 Query: 609 KGRGKSRPIVE 619 G ++ ++ Sbjct: 575 GGSNRAYRDLQ 585 >UniRef50_P20447 ATP-dependent RNA helicase DBP3 n=28 Tax=Ascomycota RepID=DBP3_YEAST Length = 523 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 109/333 (32%), Gaps = 36/333 (10%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + + + + ++ G E + + P L D L Sbjct: 190 PTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKSQVVVATPGRLLDLLQEG 249 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + + +++ + + M + E +A QT+ Sbjct: 250 SVDLSQVNYLVLDEADRMLEKGFEEDIKNI----------------IRETDASKRQTLMF 293 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDP---------IIEVRPVATQVDDLLSEIRQRA 443 +AT E + + + + G D I+EV + LL +++ Sbjct: 294 TATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYH 353 Query: 444 ---AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 NE+VL+ L K+ A + L+ +G V +H D+ +R + + + + G+ ++L Sbjct: 354 SGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLL 413 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P V V F + + IGR R G A + Sbjct: 414 LATDVAARGLDIPNVKTVIN-----LTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEK 468 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKK 592 +A + Q E+ KK Sbjct: 469 HLAGGLVNVL--NGANQPVPEDLIKFGTHTKKK 499 >UniRef50_D2RJY3 DEAD/DEAH box helicase domain protein n=2 Tax=Firmicutes RepID=D2RJY3_ACIFE Length = 544 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 128/386 (33%), Gaps = 25/386 (6%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + E ++ ++ ++ + +++ +E+ + G+P L Sbjct: 79 QKINEKDRHIQALVMSPTRELCIQVADEISKIGKTKRIRVL--PVYGGQPIERQIRSLKR 136 Query: 332 DGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +V+ + I + L E L + + QT+ Sbjct: 137 GIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTM 196 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPT---GLLDPIIEVRPVATQ-VDDLLSEIRQRAAIN 446 SAT L S + V + P I+ T+ D L I + Sbjct: 197 LFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYYETRDKVDGLCRILDT-TDD 255 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++++ TK+ ++L L G LH D+ +R +++ R G+ D+LV ++ Sbjct: 256 CKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVA 315 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAI 565 GLD+ ++ V D + S + IGR R G A+ + K I Sbjct: 316 ARGLDIDNITHVVNFDVPSD-----SESYVHRIGRTGRAGNTGVALTFITPREFRQLKLI 370 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 + + + + + + + + V + + + PIVE Sbjct: 371 ERSIKTKIIRGTLPTDASVLERQREQIVSKMQTIL------EQDRYQDYLPIVETLEKDY 424 Query: 626 DMSPKALQQKIHELEGLMMQHAQNLE 651 D +Q M + A+ LE Sbjct: 425 D-----VQDIAAAALKFMQEGAKALE 445 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 98/634 (15%), Positives = 202/634 (31%), Gaps = 97/634 (15%) Query: 39 GVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQP 98 GV+ S ++ + V+ PN A + Y + E+ V ++ Sbjct: 25 GVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFY--------- 75 Query: 99 EAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDV-VVVASVSAIYGL-GDPDLYLK 156 P T A + + RL + +L+ D +++ + I P+ Y + Sbjct: 76 ----PMDQTLTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYER 131 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 + ++V D + ++L Y N + G F +RG ++DI+ R++ Sbjct: 132 SVKKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIY-THDYKDPYRLDF 190 Query: 217 FDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE 276 F + +E + FD T + ++ I I P E QA+E+I + + + E Sbjct: 191 FGDTLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKE 250 Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + KL + DL + E + Y F + T+ D+ L++ Sbjct: 251 DKKL----------ETDLMHIEERKRMDSLSMYIEFF-----NDEVTTILDFSNPYDLIL 295 Query: 337 VDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATP 396 VD + + + G LK + IY + Sbjct: 296 VDSYKMELNEETTYQDLLTYSHTM---QGEAFIGLNFKVKLKELLKKNHLSFQIYSVSDK 352 Query: 397 GNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTK 456 + +L +++V P ++ L+ I + N +L++T T Sbjct: 353 PSTDLG-------------------VLDVDPFVGHLEQLILFINEYNGFN--ILISTKTM 391 Query: 457 RMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVS 516 E + E+L H + + VLV +L +D+ Sbjct: 392 VSFERIKEHLTNHKIS--------------YSVNQFKDAMV-VLVEEDLPGSFIDL-NHK 435 Query: 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQ 576 + + + + + R+V +A+ I + + Sbjct: 436 FIILTEDTILDTKKKAKVRY-------RSVINQAV------------KIRDISELQNGDY 476 Query: 577 KYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKI 636 + + GI K + + K P + D V S ++ K+ Sbjct: 477 VVHYDFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKL 536 Query: 637 HELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFI 670 +L + AQ++ ++ L + + Sbjct: 537 SKLNAKQWSKTK-------AQVKQKIKDLSDRLL 563 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/470 (16%), Positives = 148/470 (31%), Gaps = 53/470 (11%) Query: 169 QRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFD 228 + + RL L YA+ QA F R +++ F + + +DE +++ D Sbjct: 555 IKDLSDRLLNL-YAKRHQAEGY-QFSPRTDMLTSFEKDFN--------YDETIDQQKAID 604 Query: 229 PLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQ 288 + + P + + ++ A + Q Sbjct: 605 A----VFEDMESSK--PMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQ 658 Query: 289 RTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG 348 + + G LS + + + + VV +H + Sbjct: 659 HYLTFKDRFEKYGGS------VALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDI 712 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + +G + + + T+ +SATP L+ + + Sbjct: 713 VFKDLGLFIIDEEQRFGVQHKEKIKEI--------KVNVDTLTLSATPIPRTLQMAMYGL 764 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLE 467 D + T L+ V + L+ E I + + +V E L+ Sbjct: 765 KDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQ 824 Query: 468 EHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADK 525 + R Y H + + + EFD+LV ++ G+D+P + + I DAD Sbjct: 825 QLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADH 884 Query: 526 EGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGIT 585 G + L Q GR R+ I Y + K + + ++R + + G Sbjct: 885 LGLAQ----LYQLRGRVGRSDR---IAYAYLMFDGY-KDVNDEAKKRLSVIEDFTDLG-- 934 Query: 586 PQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQ 634 G + D+ G +I + G D+V MD+ K L + Sbjct: 935 -SGFKIALRDLGIRGAGDILGEEQSGF--------IDSVGMDLYMKLLDE 975 >UniRef50_B7P029 Vasa n=9 Tax=Coelomata RepID=B7P029_9BIVA Length = 801 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 103/307 (33%), Gaps = 27/307 (8%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ + R ++ G G + P L D + + + Sbjct: 444 QIFNDARKFSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAK 503 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 ++ + + M + + P E QT+ SAT Sbjct: 504 LKYLILDEADRMLDMGFGPDIKKIVHELGTP-------------EKTERQTLMFSATFPE 550 Query: 399 YELEKSGGDVVDQVVRPTGLL-----DPIIEVRPV-ATQVDDLLSEIRQRAAINERVLVT 452 + +G + D + G + D V Q L +I + + + LV Sbjct: 551 EIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQKLCDILSESGAD-KTLVF 609 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 KR A+ L YL E G +H D ER E +RD + G+ +L+ ++ GLD+ Sbjct: 610 VEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAARGLDI 669 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKI-TPSMAKAIGETER 570 P V V D +S + IGR R N GKA + + S+AK + Sbjct: 670 PNVKHVINYDLP-----QSIDEYVHRIGRTGRCGNLGKATSFFSEDGDGSLAKPLMRILV 724 Query: 571 RREKQQK 577 ++ Sbjct: 725 DAQQNIP 731 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 63/402 (15%), Positives = 128/402 (31%), Gaps = 37/402 (9%) Query: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303 P + + I+ A Q + M + Sbjct: 571 VPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTFTQRM--GSFG 628 Query: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363 +E SRF + + E + + V+ +H + + + Sbjct: 629 VRVEMLSRFRTPKQQREIMERV----AEGKIDVLIGTHRILNPDVEFHDLGLLIIDEEQR 684 Query: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423 +G + R + + +SATP L + D + + D + Sbjct: 685 FGVAQKEKIKQRSAGID--------VLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLP 736 Query: 424 EVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDI 480 VA D ++ E + + R+ + +L E G + H + Sbjct: 737 VETYVAEYDDGMVREALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRM 796 Query: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540 E +++ G+FDVL+ ++ GLD+P + + I A+ G + L Q G Sbjct: 797 TEDELEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQ----LYQMRG 852 Query: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600 R R+ + Y + + + E ++R + + E G G + D+ G Sbjct: 853 RVGRSSR---LAYAYFL-YKKDRVLSEVAQKRLQAIRDFTELG---AGFKIAMRDLEIRG 905 Query: 601 Q-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG 641 N+ + G + V D+ + L++ I+ L+ Sbjct: 906 AGNLLGAEQHG--------QITGVGFDLYCRLLEKTINTLQN 939 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 135/349 (38%), Gaps = 32/349 (9%) Query: 7 LNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQ--RPTMVLA 64 + + Q + +R + + L G+TGS K + + +Q +P ++L Sbjct: 1 MTNTLTKLLQQEKNVREGADLWQKTPGPLQLTGLTGSVKAGFLCALQETVQAAQPLVILT 60 Query: 65 PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124 N+ E+ F+P+ A+ P+S + + NE + R Sbjct: 61 VNRESIRAQRRELAHFYPDLAMR------------ELYPAS-LIHGQVDTRNEQVMAERA 107 Query: 125 SATKAMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183 +A + ++ + ++ A+ A P+ ++ L L VG I+Q ++ +L + Y R Sbjct: 108 AALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQEIEQSLVVEKLVKAGYER 167 Query: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243 +Q G VRG+++D+FP D +R+E FD ++ + FD T + + TI + I Sbjct: 168 TEQVDTLGQVAVRGDILDVFPINGKDS-VRIEWFDNTIDAMKRFDLDTQRSIGTISQVGI 226 Query: 244 YP---------KTHYVTPRERIVQAMEEIKEELAARRKVLLENNK-----LLEEQRLTQR 289 P + + + ++E +K +N + L +E + Q Sbjct: 227 MPLAVPNQEISASLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQLLDQETMIQQA 286 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + L +++LG R P D L D +D Sbjct: 287 GETHLLTVSDLG-HPYFPQAPRIHVQVRAMAPYNKNTDLLQKDLKGWLD 334 Score = 52.5 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 101/341 (29%), Gaps = 64/341 (18%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLK 378 E +LF YL AD L V+DE + + +R L ++ Sbjct: 234 QEISASLFQYLSADQLAVLDEPVAFFEECKKSWGDNRE-----------FADQLLDQETM 282 Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 ++ T+ P + + + + P D L + Sbjct: 283 IQQAGETHLLTVSDLGHP--------------YFPQAPRIHVQVRAMAPYNKNTDLLQKD 328 Query: 439 IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 ++ L+ T+ A L E L+ G + + G+F Sbjct: 329 LKGWLDQGIHPLIMMGTRDKAAGLAESLKGAGLPMAFA------------------GQFQ 370 Query: 499 VL------VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 + V L G + + + ++D G + +R L +T G G A+ Sbjct: 371 GVPETGGQVFAGSLTNGFYFWDEKWLLLTESDIFG-AQKKRRLTKTKG------KGPALN 423 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRG 612 Y I KA + +Y I G+++ + + G + + G Sbjct: 424 YFSDI-----KAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAGGDKLHVPVEQVG 478 Query: 613 KSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 V + P M K Q+ + + + A L Sbjct: 479 LLHKYVGNEGTPPKLSNMGRKDWQKATRKAQKAITILATEL 519 >UniRef50_B4MZE1 GK18312 n=1 Tax=Drosophila willistoni RepID=B4MZE1_DROWI Length = 1424 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 107/326 (32%), Gaps = 37/326 (11%) Query: 261 EEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----LGYCSGIENYSRFLSG 315 + + E+ + +++ + L Q + +F + G +N S Sbjct: 1078 KGYELEIGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESITKGC 1137 Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D++ + D V + + M + + + Sbjct: 1138 HILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTM------- 1190 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL-----DPIIEVRPVAT 430 QT+ SAT +G + D V G++ D + V Sbjct: 1191 --------RKEHQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDK 1242 Query: 431 -QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 L EI + A +V TKR A+ L + E +H D +R + + Sbjct: 1243 FNKRAKLMEILRDGADG--TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQAL 1300 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNG 548 R+ + G+ VL+ ++ GLD+ VS V D + + IGR R NG Sbjct: 1301 REFKSGKMKVLIATSVASRGLDIKNVSHVINYDMPS-----TIDDYVHRIGRTGRVGNNG 1355 Query: 549 KAILYGDKITPSMAKAIGETERRREK 574 +A + D +A+ + + Sbjct: 1356 RATSFFD---SDKDRALAGDLVKILE 1378 >UniRef50_C5KE40 ATP-dependent RNA helicase ded-1, putative n=6 Tax=Perkinsus marinus ATCC 50983 RepID=C5KE40_9ALVE Length = 695 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 26/265 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + + + M + + +PS+ D R Sbjct: 346 TPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSRDGR----- 400 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVD 433 Q+ SAT + + + D + G + I+ +++ Sbjct: 401 -------QSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLR 453 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 DL + + LV TKR A+++ L +H D ER E ++ + Sbjct: 454 DLY-RVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFK 512 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAIL 552 GE +LV ++ GLD+ V+LV D + + IGR R N G AI Sbjct: 513 SGELPILVATDVAARGLDISHVNLVINYDLP-----NNIDDYVHRIGRTGRAGNLGTAIA 567 Query: 553 YGDKITPSMAKAIGETERRREKQQK 577 + ++ + + + + +++ Sbjct: 568 FVNEGSKPILRDLWTLLEENKQEIP 592 >UniRef50_Q9GNP1 Vasa homolog n=25 Tax=Eumetazoa RepID=Q9GNP1_CIOSA Length = 770 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 103/327 (31%), Gaps = 37/327 (11%) Query: 295 EMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGD 354 ++ G + P L D++ + + V + + M Sbjct: 421 PVVAYGGTSMNHQIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMG 480 Query: 355 RARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVV 413 + + +PS D T+ SAT + + + D + Sbjct: 481 FETEIRKLASSPGMPSKSDR-------------HTLMFSATFPDEIQRLAHDFLREDFLF 527 Query: 414 RPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 G + I + LL I A R LV TKR A+ L L Sbjct: 528 LTVGRVGGACTDVTQSIIQVDQDDKRAKLLELISDVAETRSRTLVFVETKRGADFLACML 587 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + G +H D ER + +RD + +L+ ++ GLD+P+V V D KE Sbjct: 588 SQEGCPTTSIHGDRLQQEREQALRDFKSAVCPILIATSVAARGLDIPKVEHVINYDMPKE 647 Query: 527 GFLRSERSLIQTIGRAARNVN-GKAILYGD-----KITPSMAKAIGETERRREKQQKYNE 580 + IGR R N G+A + D ++ S+ K + E ++ + Sbjct: 648 -----IDEYVHRIGRTGRCGNLGRATTFYDNNKDGELARSLVKILSEAQQEVPGWLEECA 702 Query: 581 EHGITPQGLNKK----VVDILALGQNI 603 E K+ D G Sbjct: 703 E-SAVGSSFGKEGGFGGRDFRKRGGRN 728 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 188 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 64/426 (15%), Positives = 127/426 (29%), Gaps = 40/426 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + + E + Sbjct: 603 PMDRLICGDVGYGKTEVAIRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMV 662 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 N G L A + V+ +H + + + + Sbjct: 663 DAVN------RFKSGAKQKETLKKLAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRF 716 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD-PII 423 G L + + + ++ATP L S + + T D + Sbjct: 717 GVEHKERLKHLRATVD--------VLTMTATPIPRTLHASLLGIREISNLETPPADRQPV 768 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 E L + I + +V + ++ +E + H +D Sbjct: 769 ETHITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVGHGQMD 828 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + + + E D+LV ++ GLD+P + + I +AD G L Q GR Sbjct: 829 AHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIFIDEADTYGLA----DLHQLRGR 884 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + Y I + K + T +RR K + E G G + D+ G Sbjct: 885 VGRSKHR---AYAYFIV-NPLKLLNPTAQRRLKAIEEFTELG---AGFKIAMRDLEIRGA 937 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE---AAQ 657 NI + G + ++ + L+ + L+ + A ++ + + Sbjct: 938 GNILGGEQSG--------HIAAIGYELYCQLLENAVRALKHQPPKVAVDVVVDLPWPSYL 989 Query: 658 IRDQLH 663 RD + Sbjct: 990 PRDYVQ 995 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 55/313 (17%), Positives = 93/313 (29%), Gaps = 24/313 (7%) Query: 23 RLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFP 82 + L G T+ G GS A + A+++ +V+ P+ +M F Sbjct: 29 EMRAALAAG-RSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVEVEPWAEDMASFLG 87 Query: 83 ENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASV 142 + + T E VVV + Sbjct: 88 TRPAVFEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGG--------AEGPPKVVVCGI 139 Query: 143 SAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVID 201 SA+ L G I++ + L Y R D G F RG + D Sbjct: 140 SAVCQPVPERADLAARGRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICD 199 Query: 202 IFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAME 261 IFP +S R+E F +EVE L F + + + R T+ P + Sbjct: 200 IFPPDS-PDPFRLEFFGDEVEGLRTFAAGSQRSLEKKDRVTLLPTDQGTAGARPAKGHLA 258 Query: 262 EIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEP 321 + L+E + L ++ + E ++ E + G + Sbjct: 259 DYL--------PPDSWVVLIEPRDLREQAKHFHERVSTTDGLHTTEQ-----AFAGLMKL 305 Query: 322 PPTLFDYLPADGL 334 P + LP + Sbjct: 306 PSVVLSALPRPSV 318 >UniRef50_C9DQK7 VASA DEAD-box protein n=5 Tax=Chordata RepID=C9DQK7_9ASCI Length = 851 Score = 188 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 104/303 (34%), Gaps = 32/303 (10%) Query: 293 DLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR 352 ++ G + + P L D++ + + ++ + + M Sbjct: 490 IRPVVAYGGTSTNYQLKELQKGCHLLIATPGRLMDFINRGKIGLSSVQYIILDEADRMLD 549 Query: 353 GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQ 411 + + +P+ + T+ SAT + + + + D Sbjct: 550 MGFETEIRKLVDSPGMPAKNER-------------HTLMFSATFPDEIQKLAHDFLREDF 596 Query: 412 VVRPTGLLD-------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTE 464 + G + ++ + + L+ + A R LV TKR A+ L Sbjct: 597 LFLTVGRIGGACSDVTQVVLQVDQGDKRNKLIELLADVADTGSRTLVFVETKRSADFLAC 656 Query: 465 YLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDAD 524 L + G +H D ER E +RD + G+ +LV ++ GLD+P+V V D Sbjct: 657 SLCQEGYPTTSIHGDRLQQEREEALRDFKSGKCPILVATSVAARGLDIPKVEHVVNYDLP 716 Query: 525 KEGFLRSERSLIQTIGRAARNVN-GKAILYGDK-----ITPSMAKAIGETERRREKQQKY 578 E + IGR R N G+A + D + S+ K + ++ + + Sbjct: 717 SE-----VDEYVHRIGRTGRCGNLGRATSFYDDSANASLARSLVKILADSIQEVPSWLEE 771 Query: 579 NEE 581 E Sbjct: 772 CAE 774 >UniRef50_C4V8Q7 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V8Q7_NOSCE Length = 528 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 34/264 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + M + K Sbjct: 257 CPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQL-----------------KKII 299 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQV 432 QT+ SAT + + + V G ++ I+ V + Sbjct: 300 VNTNPDRQTLMWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKA 359 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + L + ++ NE+V++ TKRM ++L + L G + +H D R II D Sbjct: 360 NKLHESLNEKK--NEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDF 417 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKA 550 R G ++L+ ++ GLD+ V+LV D F + + IGR AR G + Sbjct: 418 RSGYKNILIATDVAARGLDIKNVALVINYD-----FPNNIEDYVHRIGRTARGDVTEGLS 472 Query: 551 ILYGDKITPSMAKAIGETERRREK 574 + + AK + + + + Sbjct: 473 HSFFTSENSACAKELVKILKEANQ 496 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/447 (15%), Positives = 144/447 (32%), Gaps = 36/447 (8%) Query: 22 RRLEEGLEDGL-AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80 + L LED L G+ S +++ + + ++ + + + A Y ++ + Sbjct: 17 KGLAALLEDSSVRTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQV 76 Query: 81 FPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVA 140 + + +F S Y + E +R + + + VV Sbjct: 77 NGDEHILFFPSSYRRAVKYGQ-------------KDAANEILRTEVLSRLQKGDPLCVVT 123 Query: 141 SVSAIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEV 199 A+ ++ + L L VG +D I LA + D ++ G + VRG + Sbjct: 124 YPEALAEKVVSQEVLMDKTLKLGVGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSI 183 Query: 200 IDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIV-- 257 ID+F S+ R++ F +EV+ + F+ I P+ + + Sbjct: 184 IDVFSFASE-YPYRIDFFGDEVDSIRTFEVENQLSKEKKQSIAIVPELTNAADKSGVSFF 242 Query: 258 -----QAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMN-ELGYCSGIENYSR 311 + + +K+ L R ++ + + L Q L E+MN EL G E R Sbjct: 243 EFIPRETVLAMKDFLWVRERIQVVREEALSPQALAAYEGEKTELMNLELKLIDGAEFTVR 302 Query: 312 FLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSA 371 L + P L + + + G+ L Sbjct: 303 ALDFKRIEFGNKPT--GTPQATLAFDTTVQPIFHKNFDLV---STSFTDYQKRGYTLYIC 357 Query: 372 LDNRPLKFEEFEALAPQTIYVSATPGNYELE--KSGGDVVDQVVRPTGLLDP-----IIE 424 D+ + + +++ P N L + + + D + Sbjct: 358 TDSEKQAKRLKDIFEERGDHITFIPVNKTLHEGFTDNVLKSCFFTDHQIFDRFHKYNLRS 417 Query: 425 VRPVATQVDDLLSEIRQRAAINERVLV 451 + + +V L E+ Q + V + Sbjct: 418 DKARSGKVALTLKELSQFEPGDFVVHI 444 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 136/415 (32%), Gaps = 39/415 (9%) Query: 230 LTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQR 289 T + + P V + I+ A + Q Sbjct: 566 ATQDAKADMES--DRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQH 623 Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGG 349 Q E + + + ++ SR + + L + ++ +H I + Sbjct: 624 FQTFSERLKD--FPCKVDYLSR----ARSAKDVSRIVKELADGKINILVGTHKIIGKSVK 677 Query: 350 MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + ++G + L + T+ ++ATP L+ S Sbjct: 678 FKDLGLLIIDEEQKFGVSVKEKL--------RQMKVNVDTLTMTATPIPRTLQFSLMGAR 729 Query: 410 DQVVRPTGLLDPIIEVRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEE 468 D V T + V T +D+++E I + N +V + +L ++ Sbjct: 730 DLSVIQTPPPNRYPIQTEVHTFNEDIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIKR 789 Query: 469 HGERVRYL--HSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 + R H ++ + +II D ++DVL+ ++ G+D+P + + I A Sbjct: 790 NIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNF 849 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G L Q GR R+ + + P + E +RR + + + G Sbjct: 850 GLS----DLHQMRGRVGRSNK---KAFCYLLAPPLTSLTPE-AKRRLQAIENFSDLG--- 898 Query: 587 QGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 G++ + D+ G N+ + G ++ + K L + + EL+ Sbjct: 899 SGIHIAMQDLDIRGAGNMLGAEQSGF--------IADLGYETYQKILAEAVKELK 945 >UniRef50_Q2NB74 DNA and RNA helicase n=7 Tax=Alphaproteobacteria RepID=Q2NB74_ERYLH Length = 492 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 102/322 (31%), Gaps = 17/322 (5%) Query: 329 LPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAP 387 L ++V + I ++ + L E L + + + Sbjct: 124 LHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAER 183 Query: 388 QTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEV------RPVATQVDDLLSEIRQ 441 QT++ SAT E G + V E + L+ I + Sbjct: 184 QTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILK 243 Query: 442 RA----AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 ER+LV T TK A+ + + L + G +H + +R + + + + Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDK 556 +L+ ++ G+D+P VS V + + IGR AR +G AI + + Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELP-----NVPEQYVHRIGRTARAGKDGVAIAFCAE 358 Query: 557 ITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRP 616 + K I + + E +G+ + G I + Sbjct: 359 DERAYLKDIQKNTDAEFDRLPLPENFRAVVEGVGPTKREQKQRGPRIKPKPKARKQGGTN 418 Query: 617 IVEPDNVPMDMSPKALQQKIHE 638 +P + ++ + + Sbjct: 419 RSKPQGGNPQSAGGPVENPVKK 440 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 59/404 (14%), Positives = 126/404 (31%), Gaps = 35/404 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ A + Q + M++ Sbjct: 547 PMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSFSQRMSDFPIK- 605 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 LS + + + + +V +H + + + + + Sbjct: 606 -----IATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQKDINFQKLGLLVVDEEQRF 660 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G AL + + + +SATP L S + D T + Sbjct: 661 GVESKEALKRMRVNVD--------ILSMSATPIPRTLYLSMTGLRDFSTILTAPHNRKPV 712 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 V + D+++ IR+ +V + E++ L+ L H +D Sbjct: 713 RTIVTKENDEIIEVAIRRELERGGQVYYLHNRVKTIENVALKLKRQFPEANILIGHGQMD 772 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ + G+ +LV ++ G+D+ + + I AD+ G SL Q GR Sbjct: 773 EEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVIDRADRFGLS----SLYQLRGR 828 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ Y + P +AI + + R + +H G + D+ G Sbjct: 829 VGRDHRQ---AYCYLLMPR-DEAIMDNAKERLSALR---KHTHPGAGFKLAMRDLEIRGA 881 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQ 645 + V ++ + L++ + +L+G + Q Sbjct: 882 GNMLGSQQSG-------HIAAVGFELYCQLLKKSVEDLKGSIHQ 918 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 87/217 (40%), Gaps = 8/217 (3%) Query: 77 MKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE---HIEQMRLSATKAMLE- 132 + F + E + + YQ + +P+ D + + + ++ I+ R +L+ Sbjct: 45 LCVFETSSKAESCFNEFKKYQSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQLLQN 104 Query: 133 -RRDVVVVASVSAIY-GLGDPDLYLKMMLHLTVGMI-IDQRAILRRLAELQYARNDQAFQ 189 V++ SV+++ + P L L L + + E+ + Q Sbjct: 105 RGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSL 164 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 G F +RG ++D+F +R++ FD+E++ L LFD + + ++ + + P Sbjct: 165 PGEFSLRGGILDVFSP-DQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVEKC 223 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 I++ ++ K + + + E+ +L Sbjct: 224 GLEPRGILEYIKGFKLCVVEEESIDRHLERYQEKVQL 260 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 183/570 (32%), Gaps = 111/570 (19%) Query: 52 VIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEK 111 + +L++P +++ P + A L ++ F Y PS D F + Sbjct: 8 LKLNLEKPVLIVVPTEYEAQLLSQKLNAF--------------------YFPSHDVFPFE 47 Query: 112 DASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLG-DPDLYLKMMLHLTVGMIIDQR 170 + +V+ + R+ +L +V+V ++ AI P + L G + Sbjct: 48 EVAVSFEVRCRRIEILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEVFHNP 107 Query: 171 AILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPL 230 + L Y R G F VRG+VID F D+ +RVELFD+ +E + FD Sbjct: 108 E--ETMLNLGYDRTYIVRTGGEFSVRGDVIDFFGPLYDN-PVRVELFDQTIEAIRCFDAS 164 Query: 231 TGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI----------------------KEELA 268 T + V + + P Y+ ++ +EE A Sbjct: 165 TQRSVFKVEEAFLLPVREYLCNEHLFDTVPAKLGSNSTILDYSDFEIFVAEFDRCQEEFA 224 Query: 269 ARRKVLLENNKLLEEQRLTQRTQ------------------------------------- 291 R + E + + + + +Q Sbjct: 225 KREREAREMLEKKQIEDYVENSQISFSSLVKRIEFFKPLEIDLNTLKILPQTSQKSRDQI 284 Query: 292 --FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYL----PADGLLVVDESHVTIP 345 FD E + E + + G P +Y + V E I Sbjct: 285 PIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRYEDSTVYVPVERIHKIH 344 Query: 346 QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG 405 + G R R + + R+ N K EE + +S + E Sbjct: 345 KYIGDTRNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSLPGDPELEK 404 Query: 406 GDV-------VDQVVRPT----------GLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 D + +D ++ + + L + ++ Sbjct: 405 RFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAFKCVVSGKQ 464 Query: 449 VLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI- 503 V V T ++ + T+ + G +VR L I T+ + EI+ L G+ DV++G Sbjct: 465 VAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGKIDVIIGTH 524 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSER 533 LL+ + ++ LV I + G + E+ Sbjct: 525 ALLQNNVRFSDLGLVIIDEEQSFGVEQKEK 554 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 112/341 (32%), Gaps = 31/341 (9%) Query: 311 RFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPS 370 R L + D L + V+ +H + + +G Sbjct: 494 RLLDRSISTIMKKEILDGLFRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKE 553 Query: 371 ALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVAT 430 + +SATP L + + D V T + + + VA Sbjct: 554 KFKQL--------RTNVNVLSLSATPIPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAK 605 Query: 431 QVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDIDTVERME 487 + L+ + + +V+ +D+ + L+ + + H + + E Sbjct: 606 YSNQLVRGAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTE 665 Query: 488 IIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN 547 +R + DV++ ++L G+D+P + + + D+ + G + L Q GR R+ Sbjct: 666 AVRSFYEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQ----LYQLRGRVGRSTK 721 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + + S E + ++ + ++ + G + D+ G Sbjct: 722 R---AFAYFLHDS------EISEKALQRLQAIKQLTGSGSGFQLALRDMQIRGVGSVFGF 772 Query: 608 AKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQ 648 + ++V +++ + + Q++ ++ + + Sbjct: 773 EQHGN-------INDVGLNLYLEIMNQQLKGIKEEKSESRK 806 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/454 (15%), Positives = 142/454 (31%), Gaps = 47/454 (10%) Query: 219 EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENN 278 +++ ++ + P + + ++ A Sbjct: 556 DQLTSIASIKADMQRAR---------PMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVAV 606 Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 + Q + +E M E + I SRF + + E + + + +V Sbjct: 607 LVPTTILAEQHYRSFIERMAE--FPCDIAKLSRFCTSQEEREA----LKGIKSGKVDIVV 660 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 +H Q + + +G + L + +SATP Sbjct: 661 GTHRLASQDVDFHNLGLVIIDEEQRFGVDVKERLKAL--------KATVDVLTLSATPIP 712 Query: 399 YELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKR 457 L S V D + D + V +DL+ + + ++ Sbjct: 713 RTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNRVN 772 Query: 458 MAEDLTEYLEEHGERV--RYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEV 515 E + L + R H ++ E +++ D G+FD+L+ ++ GLD+P Sbjct: 773 DIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNA 832 Query: 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQ 575 + + I +A++ G L Q GR R N +A Y + K+I RR + Sbjct: 833 NTIFINEAERYGLA----DLHQLRGRVGRYKN-RAHCY---LLIDSNKSITPNAARRLRA 884 Query: 576 QKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQK 635 + E G G + D+ G + V ++ + L+ Sbjct: 885 IEEFSEMG---AGFQISMRDLEIRGAGNLLGTQQSG-------HIAAVGYELYCQLLENA 934 Query: 636 IHELEGLM--MQHAQNLEFE-EAAQIRDQLHQLR 666 + L+ Q A +L EA D + +R Sbjct: 935 VRSLQRQPPKQQLAVDLNLPGEAFLPSDYVDDMR 968 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 27/240 (11%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + + T+ GV GS A + + P + + P + A L Sbjct: 22 IAQLAGFAEVVAAMSR-HEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADDLA 80 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERR 134 ++ F Q +PS ++ I + + RL K +L R Sbjct: 81 IDIALF--------------RSQGILPLPSFESAIVAELGRD-DAFGPRLRTLKELLVAR 125 Query: 135 ---------DVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184 +VV S+ ++ ++ + ++ LR L E Y Sbjct: 126 ENPRAAATLQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGYEAT 185 Query: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244 G F RG +ID+F A R+ELFD+EVE + FD T + + + I Sbjct: 186 TSVQLPGEFCHRGGIIDLF-AHDWQRPARIELFDDEVESIRQFDVATQRSLGALDWVEIT 244 Score = 52.5 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 50/448 (11%), Positives = 121/448 (27%), Gaps = 77/448 (17%) Query: 225 SLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQ 284 + + V I P ++ ++ E R ++ + Sbjct: 152 REVLAASSRRVRKQESLEIDPFLRWLVEHGYEATTSVQLPGEFCHRGGIIDLFAHDWQRP 211 Query: 285 RLTQRTQFDLEMMNEL----GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDES 340 + ++E + + G ++ + + DYLP + +++ Sbjct: 212 ARIELFDDEVESIRQFDVATQRSLGALDWVEITAIPAANLAGGVIADYLPPNSRILLFSP 271 Query: 341 HVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE 400 + ++ R+ E + + S+L + + + A + Sbjct: 272 DRLSDEGRALH--ARSTAEAQLMSVAEVLSSLSSFGIATADGIAAGSLGVPWHM------ 323 Query: 401 LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 P+ V + + + ++ A +E V++ T T+ + Sbjct: 324 --------------------PVESVEQFSGDLTKVRDQLGDLAGDHE-VMIITPTEAEVQ 362 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L E G ++G LREG +P+ L+ I Sbjct: 363 RLREIFATTSLAAT--------------------GRLSYVIGT--LREGFRVPDEKLIII 400 Query: 521 LDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNE 580 + R + +G+A + D + + R K E Sbjct: 401 TGGELFHRGELRRLPRRRLGKA-------IDSFLDLREGDLVVHLAHGIG-RFAGIKLLE 452 Query: 581 EHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + + L + G P V D V + + + ++ Sbjct: 453 RGETSEEHLEIEFD--------------GGTRIYVPAVRIDLVQKYVGGTKTRPSLAKIG 498 Query: 641 GLMMQHAQNLEFEEAAQIRDQLHQLREL 668 G + A + ++ +L+ + Sbjct: 499 GKTWLKQKKAAESAVADLAVEMLELQAM 526 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 93/513 (18%), Positives = 172/513 (33%), Gaps = 66/513 (12%) Query: 84 NAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVS 143 + + + + PS D +D ++ I+ R+ +L ++ + ++ Sbjct: 3 EILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLK 62 Query: 144 AIYGLG-DPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDI 202 A+ PD + L +T + RL E+ Y R G F +RG++IDI Sbjct: 63 ALTEKVFSPDFLRENSLMITRSTKLTLS--PERLVEMGYERVFTVQNVGEFAIRGDIIDI 120 Query: 203 FPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP--------------KTH 248 + +D +R+ELF +E+E + F T + + + I P KT Sbjct: 121 YSPGND-FPVRIELFGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTD 179 Query: 249 YVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEM------------ 296 E + + ++E ++ R +L E ++R+ + ++E Sbjct: 180 VRFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKK 239 Query: 297 ----------MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLP-ADGLLVVDESHVTIP 345 + E G E+ G + DYL V+ I Sbjct: 240 ESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKID 299 Query: 346 QIGGMYRGDRARKETLVEYG---FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELE 402 ++ K + G L ++ K E L + + E Sbjct: 300 RVHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPE 359 Query: 403 KSGGDVVDQVVRPTGLLDPIIEVR-----------------PVATQVDDLLSEIRQRAAI 445 T IE + + L + Sbjct: 360 LEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVS 419 Query: 446 NERVLVTTLT----KRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLV 501 ++V V T ++ E+ E +E G +V L S E+ EII L+ GE D+++ Sbjct: 420 GKQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIII 479 Query: 502 GI-NLLREGLDMPEVSLVAILDADKEGFLRSER 533 G +LL E ++ ++ LV I + K G + ER Sbjct: 480 GTHSLLNERIEFSDLGLVIIDEEQKFGVEQKER 512 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 61/433 (14%), Positives = 132/433 (30%), Gaps = 43/433 (9%) Query: 229 PLTGQIVSTI--PRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRL 286 P Q + + + P + + + ++ A + Sbjct: 374 PDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLA 433 Query: 287 TQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQ 346 Q + E M G + + SR + + ++ +H + + Sbjct: 434 RQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKK------GEIDIIIGTHSLLNE 487 Query: 347 IGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGG 406 + ++G L+ + +SATP L + Sbjct: 488 RIEFSDLGLVIIDEEQKFGVEQKERFKKL--------RLSVNVLTLSATPIPRTLHMALS 539 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEY 465 + D V + VA DDL+ + + +V+ ++ E Sbjct: 540 GMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEK 599 Query: 466 LEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 L+ + H + I+ + G DVL+ ++ G+D+P + + + DA Sbjct: 600 LKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDA 659 Query: 524 DKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHG 583 + G + L Q GR R+ + + P R ++ K + + Sbjct: 660 HRYGLSQ----LYQLRGRVGRSDRR---AFAYFLYPKGTP------RSALERLKVLKSYT 706 Query: 584 ITPQGLNKKVVDILALG-QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGL 642 GL + D+ G ++ + G S V + + + L++ I + Sbjct: 707 GFGSGLQIALKDMELRGVGDVLGLEQHGNVVS--------VGLKLYNEILKETITRFKER 758 Query: 643 --MMQHAQNLEFE 653 +H+ N+E E Sbjct: 759 RIEKKHSVNVEIE 771 >UniRef50_B6BS44 ATP-dependent RNA helicase RhlE n=5 Tax=root RepID=B6BS44_9RICK Length = 536 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 104/318 (32%), Gaps = 37/318 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D+L L + ++ + + M + +V Sbjct: 127 TPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVL----------------- 169 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-------VRPVATQVD 433 +F QT+ SAT L S + TG I + D Sbjct: 170 KFVPKDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYD 229 Query: 434 DLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLR 493 +L+ + R +LV TKR A+ + + L+E G +H D+ +R +I R Sbjct: 230 ELIDQFLARK---GSILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFR 286 Query: 494 LGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAIL 552 G +L+ ++ GLD+P + V D + + IGR AR G A+ Sbjct: 287 KGLKRILIATDVAARGLDIPLIQHVINYDLP-----QVPEDYVHRIGRTARAGSEGSALT 341 Query: 553 YGDKITPSM----AKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + SM K I + + + ++ +G N K ++ K + Sbjct: 342 FLTPDDRSMWNSINKLIDPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGRQ 401 Query: 609 KGRGKSRPIVEPDNVPMD 626 R + + Sbjct: 402 DRSSSFRNKPKSYDKSRS 419 >UniRef50_D0MWX2 ATP-dependent RNA helicase DBP2, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWX2_PHYIN Length = 546 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 17/276 (6%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQI-G 348 T+ + G + + G + D L + + I + Sbjct: 225 TRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIAD-LRRGVEICICTPGRMIDMLSM 283 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 G R L E L + + K QT+ SAT + + + Sbjct: 284 GKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALANDFL 343 Query: 409 VDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAE 460 D + G LD I+EV + L +R R+++ TKR A+ Sbjct: 344 TDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHLRDIYE-GGRIIIFCETKRGAD 402 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 +L+ L + +H + ER ++R+ + G +LV ++ GLD+ ++ V Sbjct: 403 ELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVVN 462 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGD 555 D ++ I IGR AR G +I + Sbjct: 463 FDMP-----KNIEDYIHRIGRTARAGNKGTSISFFT 493 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 116/297 (39%), Gaps = 18/297 (6%) Query: 33 AHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSY 92 + L GV I ++ LQ+P +++A ++ A Q+Y + E F EN V +F Sbjct: 24 KNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEENMVHFF--- 80 Query: 93 YDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPD 152 P + A + RL A +L ++ +V+++ A+ Sbjct: 81 ----------PVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAA 130 Query: 153 L-YLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIA 211 + + L L V + + I L Y R+D G F +RG+++DI+P Sbjct: 131 IKFKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIA-YP 189 Query: 212 LRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARR 271 R+E FD+E++ + F+ ++ + ++ I P + + I + L Sbjct: 190 YRIEFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPADDQ-LDKLYQNEDYTTILDYLTESG 248 Query: 272 KVLLENNKLLEEQ--RLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 + ++ + + + ++ R + L + +++ + + +LF Sbjct: 249 IICFDDIRAIRQNIVQIDARNRDYLAHETSTNIKNSRLDFTSIFNQIVQAKIYSSLF 305 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/459 (14%), Positives = 139/459 (30%), Gaps = 48/459 (10%) Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 ++++ + + P + + ++ A Sbjct: 564 PDQIKAIREIKLDMQK---------EKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVA 614 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + Q LE + + L + + L + +V Sbjct: 615 FLVPTTILAEQHYATMLERFKDFPVNVAM------LCRFQTEKEADEIATNLSNGKIDIV 668 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 +H + + + +G + L + + ++ATP Sbjct: 669 VGTHRILSRDIKFKNLGLLIIDEEQRFGVKHKEKLKKLKNNID--------VLTLTATPI 720 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEI-RQRAAINERVLVTTLTK 456 L S V D V T + V + +++ E + A N ++ Sbjct: 721 PRTLHMSMIGVRDLSVMETPPANRYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKI 780 Query: 457 RMAEDLTEYLEEHGERVR--YLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPE 514 + + YL + R Y+H + + +I+ +FD+LV ++ G+D+P Sbjct: 781 QDIDQKVAYLSQLIPEARIEYIHGRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPN 840 Query: 515 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREK 574 V+ + + +AD G + L Q GR R+ + Y + K + E +R Sbjct: 841 VNTLLVENADTYGLSQ----LYQLRGRIGRSSR---LAYAYFL-YKRDKVLTEVSEKRLN 892 Query: 575 QQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQ 633 + G G + D+ G NI + G D+V D+ + L Sbjct: 893 AIRDFTALG---SGFKIAMRDLSIRGAGNILGKQQHGF--------IDSVGYDLYAQMLD 941 Query: 634 QKIHELEGLM--MQHAQNLEFEEAAQIRDQLHQLRELFI 670 Q I + G + + A I + ++ I Sbjct: 942 QTIKQKRGDKVCHKTNAEVRINLEAYIPTEYISSQKQKI 980 >UniRef50_UPI00006CD03A P68-like protein, putative n=1 Tax=Tetrahymena thermophila RepID=UPI00006CD03A Length = 699 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 34/270 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L ++ + + +++ + + M + Sbjct: 343 TPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEPSIRKIVG---------------- 386 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGL--------LDPIIEVRPVATQ 431 QT+ SAT + D + G +D +E+ + + Sbjct: 387 -QIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEIIDKSQK 445 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 D + EI +++ ++ T TK+ +DL++ L+ R +H D +R +++ Sbjct: 446 YDR-VKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRDKVMDL 504 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 + G + L+ ++ GLD+ ++ LV D F + + +GR R GKA Sbjct: 505 FKTGRVNTLIATDVASRGLDVKDIKLVINYD-----FPKQIEDYVHRVGRTGRAGAQGKA 559 Query: 551 ILYGD-KITPSMAKAIGETERRREKQQKYN 579 I + D ++K + + ++ ++ + Sbjct: 560 ISFLDQYEDKKISKELVDVLKQNNQEISQD 589 >UniRef50_Q5JKF2 DEAD-box ATP-dependent RNA helicase 40 n=11 Tax=Viridiplantae RepID=RH40_ORYSJ Length = 792 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 96/300 (32%), Gaps = 17/300 (5%) Query: 290 TQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG- 348 T+ + E G + G P L D L +VV + Sbjct: 231 TRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRD-LDRGVDVVVATPGRLNDILEM 289 Query: 349 GMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDV 408 + L E L + + K + QT+ +AT + + Sbjct: 290 RRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLL 349 Query: 409 VDQVVRPTGLLDPIIEVRPVATQVDDL--------LSEIRQRAAINERVLVTTLTKRMAE 460 V V G +D ++ + V+ + L +I + +VL+ TKRM + Sbjct: 350 VHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCD 409 Query: 461 DLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAI 520 L L +H D ER +++ R G +LV ++ GLD+ ++ +V Sbjct: 410 QLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVIN 468 Query: 521 LDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERRREKQQKYN 579 D F + IGR R G A + A + + ++ + Sbjct: 469 YD-----FPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRD 523 >UniRef50_A7VM16 Vasa-related protein n=5 Tax=Eumetazoa RepID=A7VM16_9ANNE Length = 990 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 34/344 (9%) Query: 297 MNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYR-GDR 355 + G S + P L D+ + + ++ + ++ M G Sbjct: 628 VAYGGVSSSYQEKEILKGAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFH 687 Query: 356 ARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVR 414 +++ G +++NR QT+ SAT + + + D + Sbjct: 688 TAIASILSQGESGMPSVNNR------------QTVVFSATIPEEVQKLAAKLLREDYIFI 735 Query: 415 PTG-------LLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLE 467 G ++ + + + D LL +++R +++V+ KRMA+ ++ +L Sbjct: 736 TVGCIGSANLDIEQYVLLMEQENKRDKLLEIVQKRGED--KIIVSVEEKRMADFISAFLS 793 Query: 468 EHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEG 527 + +H ++ ER + +RD R G +LV N+ GLD+PEV V D Sbjct: 794 QASFPTASIHGNLTQQEREKALRDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPH- 852 Query: 528 FLRSERSLIQTIGRAAR-NVNGKAILYG-----DKITPSMAKAIGETERRREKQQKYNEE 581 + IGR R GKA + + + S+ K + + + + + Sbjct: 853 ----IEEYVHRIGRPGRCGNTGKATAFFVAEADNHLARSLVKVLSDALQEVPEWLEKMAA 908 Query: 582 HGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPM 625 I G ++ + +SRP + D Sbjct: 909 DNIGMGGFSRPGGGKFGGRDMRNNRPGGYQQQSRPSHQQDEGRF 952 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 100/651 (15%), Positives = 199/651 (30%), Gaps = 112/651 (17%) Query: 16 DQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYG 75 + L E LE + G++ S K+ + L + A ++ Sbjct: 20 SKTRIFFALTEALEKKE-PLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQ 75 Query: 76 EMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRD 135 + K F P+ D K + +I + R + ++E + Sbjct: 76 DGKIFAEN---------------CLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEE 120 Query: 136 VVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFR 194 ++V ++ A+ + + + + + + +G + ++ L L Y R DQ RG + Sbjct: 121 GMLVTTLPAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYS 180 Query: 195 VRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRE 254 +RG ++D+F + ++ LR+E FD+EV+ L F + + + + IYP + P Sbjct: 181 LRGGILDVFSNQMEE-PLRIEFFDDEVDSLRYFSLESQRSLEQVEEANIYPVSEQGKPSS 239 Query: 255 RIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLS 314 ++ + ++ E ++LEE + + E + + S Sbjct: 240 LKAFSLLDYLP--KDCLVIVDEPVRVLEEGKRVE------------------EEFIAYFS 279 Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 R E L + + + + + E+G + L + Sbjct: 280 QRAEAEANQE-----KDQRPLDLFSVRTLMEECASRPIFFFSSLGGISEWGEVFENPLKS 334 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDD 434 ++ E Q Y+ EK + L Sbjct: 335 ISVECREIPFYGKQFAQFKGDMEKYKKEKVRISLYSPSQSRASRL--------------- 379 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 E L + G D + +R E Sbjct: 380 ----------------------------AEELRKEGLSAYC--PDRLSEDREEGEDTENA 409 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G VL LR+G +P+ L+ + + D G +GR R Sbjct: 410 GSIRVLPRY--LRKGFYLPKEKLLVMTEQDLYGQS--------LVGRKRRKKKQV----- 454 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + IG + +E HGI +++V + G Sbjct: 455 ------ESLHIGSLTELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKILYGDGGNLY 508 Query: 615 RPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 665 P+ + D + +A K++ L G Q ++ +I +L L Sbjct: 509 LPVNKLDGIEKYAGKEAKAPKLNRLNGSEWQKTKSKVKGAVREIAKELLAL 559 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/355 (18%), Positives = 121/355 (34%), Gaps = 34/355 (9%) Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 G LS + + L + + ++ +H + + + Sbjct: 661 MKGFPVEVGILSRFQSQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLLVVDEEQ 720 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDP- 421 +G + + + + +SATP L S + D + +D Sbjct: 721 RFGVQHKERIKSL--------KENVDVLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRL 772 Query: 422 IIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVR--YLHSD 479 I+ + + + I + N +V + ED L++ R Y H Sbjct: 773 PIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIEDTALRLQKLLPEARIAYAHGQ 832 Query: 480 IDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI 539 + E EI+ GE DVLV ++ GLD+P + + I DADK G + L Q Sbjct: 833 MGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQ----LYQIR 888 Query: 540 GRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 GR R+ Y + K++ E +R K + E G G+ + D+ Sbjct: 889 GRVGRSNR---TSYAFLL-YKKGKSLTEESEKRLKAIREFTELG---SGIRIALRDLEIR 941 Query: 600 GQ-NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE 653 G N+ + G + V ++ K L+ + +G + +FE Sbjct: 942 GAGNVLGAEQHG--------HMEAVGYELYTKLLRHAVLLEKGEKQE---EEDFE 985 >UniRef50_C5KR89 RNA helicase, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KR89_9ALVE Length = 584 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 34/285 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + +++ + + M + + Sbjct: 304 TPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIR-----------------RIV 346 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVD-QVVRPTGLLD--------PIIEVRPVATQ 431 QT SAT + + + G +EV + Sbjct: 347 SQIRPDRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDK 406 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 +++ R++V T TK+ A+ LT + + +H D + ER I+ D Sbjct: 407 RQMFFDWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILND 466 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKA 550 + G +VLV ++ + GLD+ V V D K + + IGR R G + Sbjct: 467 FKTGRCNVLVATDVAQRGLDIKNVEWVVNYDMPK-----TVEDYVHRIGRTGRAGAVGNS 521 Query: 551 ILYG--DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKV 593 + + D TP + + + E ++ + ++ Sbjct: 522 LTFITNDTHTPDRVRMAKDIVKCMEDVKQTPPQSLYDMAAISIAS 566 >UniRef50_B0TII3 Dead/deah box helicase n=18 Tax=Bacteria RepID=B0TII3_HELMI Length = 540 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 111/342 (32%), Gaps = 19/342 (5%) Query: 317 GPGEPPPTLFDYLPADGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNR 375 G+ L +V+ + + R + R L E L Sbjct: 121 YGGQSIDRQIRALRYGVQVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVED 180 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVA--- 429 + QT+ SAT + + + + P+IE Sbjct: 181 IEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKE 240 Query: 430 TQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEII 489 +Q D L I I ++ TKR ++L LE G LH D+ +R ++ Sbjct: 241 SQKVDALCRILDMEEIGSS-IIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVM 299 Query: 490 RDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G 548 + R G+ ++L+ ++ GLD+ V+ V D + S + IGR R G Sbjct: 300 KKFRDGKAELLIATDVAARGLDVENVTHVINYDIP-----QDPESYVHRIGRTGRAGRKG 354 Query: 549 KAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 AI + K I + R +++ I + K+ + + + Sbjct: 355 IAITLINYREYRQLKLIERVTKARIQRRDLPSMADIVER--QKEAHKMKIVKL-LDGGHF 411 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIH--ELEGLMMQHAQ 648 + + PM+++ L+ I E E + + Sbjct: 412 GEYKSIISELAEEYDPMEIAAATLKLLIEGPEAETEKDEAPE 453 >UniRef50_Q2PZC2 Vasa protein n=16 Tax=Neoptera RepID=Q2PZC2_APIME Length = 630 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 84/259 (32%), Gaps = 28/259 (10%) Query: 315 GRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDN 374 P L D++ + + + + M + + + Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGER 383 Query: 375 RPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVA-- 429 QT+ SAT + + + + + G++ +E Sbjct: 384 -------------QTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVA 430 Query: 430 -TQVDDLLSEIRQRAAINE---RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER 485 + DLL EI +R + LV K+ A+ + +L E+ +H D +R Sbjct: 431 RNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQR 490 Query: 486 MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR- 544 E + D + G +LV + GLD+ VS V D K + IGR R Sbjct: 491 EEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPK-----GIDEYVHRIGRTGRV 545 Query: 545 NVNGKAILYGDKITPSMAK 563 G+A + D + + Sbjct: 546 GNRGRATSFFDPEEDAPLR 564 >UniRef50_C4Q2M5 DEAD box ATP-dependent RNA helicase, putative n=2 Tax=Schistosoma mansoni RepID=C4Q2M5_SCHMA Length = 879 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 91/266 (34%), Gaps = 33/266 (12%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + + +++ + + M V Sbjct: 207 TPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVV----------------- 249 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG--------LLDPIIEVRPVATQV 432 QT+ SAT + + D + G + +E+ + + Sbjct: 250 SQVRPDRQTLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKF 309 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 LLS + N RVLV T TK+ ++L + L++ G +H D ER + Sbjct: 310 KRLLSLLNSF--DNARVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMF 367 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKAI 551 R G VLV ++ GLD+ +V + D + I IGR R+ G A Sbjct: 368 REGHISVLVATDVASRGLDINDVRYIINYD-----YPSQTEDYIHRIGRTGRSDKKGTAY 422 Query: 552 LYGDKITPSMAKAIGETERRREKQQK 577 + P +A+ + E + + Sbjct: 423 TFFSAKQPRLARELIEVLKEARQTIP 448 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/410 (17%), Positives = 131/410 (31%), Gaps = 37/410 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ + + Q + E M++ Y Sbjct: 545 PMDRLICGDVGFGKTEVAIRAAFKSVMGGKQVAILVPTTVLAEQHYRNFRERMSD--YPV 602 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + + L D + +V +H I + + + Sbjct: 603 TVELLSRFRTAAEQRKTVQGLAD----GRVDIVVGTHRLISKDILFKDLGLVVIDEEQRF 658 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L S D T L+ I Sbjct: 659 GVLHKERFKEMFKLVDM--------LTLSATPIPRTLYLSLMGAKDMSTIETPPLNRIPT 710 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYL--HSDID 481 + + ++ + I + + +V E + + +++ + R + H +D Sbjct: 711 ETLICPYDERIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIGHGQMD 770 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E +++ + G DVL+ ++ GLD+P + + I AD+ G L Q GR Sbjct: 771 EHELEDVMHEFVSGAADVLISTTIIESGLDIPNANTIIIDRADRFGLA----DLYQLRGR 826 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R + Y + P RRR K G G + D+ G Sbjct: 827 VGRAQH---KAYAYLLLPREM-MTQGEARRRINAIKQYSSLG---AGFKIAMRDLEIRGA 879 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL 650 NI T G N+ D+ L+Q I +L+G ++ + Sbjct: 880 GNILGTAQSG--------HIVNIGFDLYCALLKQAIAKLKGEKVRARLEV 921 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 129/388 (33%), Gaps = 41/388 (10%) Query: 14 SGDQPEAIRRLEEGLE--DGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAA 71 +Q A LE L + V + + F A ++ + ++ PN Sbjct: 7 PLEQIAAAPPLEAKLALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVRTQE 66 Query: 72 QLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML 131 ++ E+ ++FP+ + P D + A + RL + + Sbjct: 67 TMHNELLQWFPDA---------------LFFPEIDRAPVEGALPDPESIAERLGIVQRLT 111 Query: 132 E--RRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQ 189 R VVV+ S + P ++ + L +D+ +L++LAE Y Q Sbjct: 112 SVKGRQVVVLTRASLDDEVPSPAALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQVSA 171 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHY 249 RG F VRG ++D+F + +R+ELFD+E++ L FD T V + T+ Sbjct: 172 RGQFAVRGGILDVFSFHHS-LPVRIELFDDEIDSLREFDLDTQISVQHLDTVTLL----- 225 Query: 250 VTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENY 309 +A +++E + R + Q + +E G E+Y Sbjct: 226 -LGEAAAERASCKLQELVTERDITIDAEASWF-------AAQVRIMEHSEGAATEGAEDY 277 Query: 310 SRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLP 369 S G GE A +V + +R + R + Sbjct: 278 STAFFDHGLGE--------FEAGDFVVDEIKRERFFSQLREWRTEGWRVHVFCNNEGEIE 329 Query: 370 SALDNRPLKFEEFEALAPQTIYVSATPG 397 D P + T+ T Sbjct: 330 RLHDLLPPVEADALQFTVGTLNCGFTFP 357 Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 68/489 (13%), Positives = 126/489 (25%), Gaps = 85/489 (17%) Query: 140 ASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRA--------ILRRLAELQYARNDQA--FQ 189 + + + + + G + + L + AR Sbjct: 3 TPPNPLEQIAAAPPLEAKLALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNV 62 Query: 190 RGTFRVRGEVIDIFPAESDDIALRVELFDEEVER----LSLFDPLT-GQIVSTIPRFTIY 244 R + E++ FP LF E++R +L DP + + + + R T Sbjct: 63 RTQETMHNELLQWFPDA---------LFFPEIDRAPVEGALPDPESIAERLGIVQRLTSV 113 Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 V + L L + +L E+ L Q + E + ++ Sbjct: 114 KGRQVVVLTRASLDDEVPSPAALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQVSARG 173 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPA--DGLLVVDESHVTIPQIGGMYR---------- 352 L P + D L D Q Sbjct: 174 QFAVRGGILDVFSFHHSLPVRIELFDDEIDSLREFDLDTQISVQHLDTVTLLLGEAAAER 233 Query: 353 -----GDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEK-SGG 406 + + + A R ++ E A Y +A + E +G Sbjct: 234 ASCKLQELVTERDITIDAEASWFAAQVRIMEHSEGAATEGAEDYSTAFFDHGLGEFEAGD 293 Query: 407 DVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYL 466 VVD++ + + S++R+ RV V + E L + L Sbjct: 294 FVVDEI------------------KRERFFSQLREWRTEGWRVHVFCNNEGEIERLHDLL 335 Query: 467 EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKE 526 L +G + G P + + DA+ Sbjct: 336 PP--VEADAL--------------QFTVGTLNC---------GFTFPSAKVAVLSDAELF 370 Query: 527 GFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITP 586 G R+ R+ + RA + I + + + R E + G T Sbjct: 371 GRYRNTRARRMALRRAREQASRSQIDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTE 430 Query: 587 QGLNKKVVD 595 + L D Sbjct: 431 EVLVLAFAD 439 >UniRef50_Q5HME0 Probable DEAD-box ATP-dependent RNA helicase SERP1688 n=56 Tax=Staphylococcus RepID=Y1688_STAEQ Length = 509 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 78/457 (17%), Positives = 143/457 (31%), Gaps = 52/457 (11%) Query: 204 PAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEI 263 P + D I +E +++ F I P V ++ + + Sbjct: 27 PIQKDSIPYALE--GDDILG------QAQTGTGKTGAFGI-PLIEKVVGQQGVQSLILAP 77 Query: 264 KEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPP 323 ELA + L ++ ++ G + + + P Sbjct: 78 TRELAMQVAEQLREFSKGQKVQVVTVF---------GGMPIERQIKALKRGPQIVVGTPG 128 Query: 324 TLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFE 383 + D+L L + + + M +D+ ++ Sbjct: 129 RVIDHLNRRTLKTQGIHTLILDEADEM----------------MNMGFIDDMRFIMDKIP 172 Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL---LDPIIEVRPVATQVDDLLSEIR 440 A QT+ SAT E + + T DP I+ + + Sbjct: 173 AEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFT 232 Query: 441 QRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFD 498 E +V TKR ++LT L G + LH DI +R+E+++ + + D Sbjct: 233 NFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292 Query: 499 VLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKI 557 +LV ++ GLD+ VS V D + S IGR R G A+ + + I Sbjct: 293 ILVATDVAARGLDISGVSHVYNFDIP-----QDTESYTHRIGRTGRAGKEGIAVTFVNPI 347 Query: 558 TPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPI 617 + I + RR K + + DI QN + + R + Sbjct: 348 EMDYIRQIEDVNNRRMKALRPPHRKEVLKARE----DDIKDRVQNWMSRENEPRLQRIS- 402 Query: 618 VEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEE 654 + + S + + + EL + L FE+ Sbjct: 403 --SELLKEYDSTELVASLLQELVEANDEVEVQLTFEK 437 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 133/416 (31%), Gaps = 41/416 (9%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + I+ A + Q + M GY Sbjct: 605 PMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAILVPTTVLAQQHFLNFRDRMA--GYPI 662 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 +E SRF + A + ++ +H + + + + Sbjct: 663 VVETVSRF----RKPAEVKKILQSTAAGKVDILIGTHRILQKDVSFKDLGLVVIDEEQRF 718 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + + +SATP L + + V T ++ Sbjct: 719 GIKHKEVFKE--------WRSTVDILTMSATPIPRTLYMALTGARELSVIETAPVERKPI 770 Query: 425 VRPVATQVDDLLSE-IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 V + D L+SE IR+ A +V + + LE+ V H +D Sbjct: 771 QTIVKSYDDALVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVGHGQMD 830 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 + ++ D ++ VLV ++ GLD+P + + I AD+ G + L Q GR Sbjct: 831 EKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQ----LYQLRGR 886 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R Y + K + + R+R ++ H G + D+ G Sbjct: 887 VGRFKRQ---AYAYLLL-HKHKRLMDVARKRLAAIRH---HNQLGAGFRLAMRDLELRGA 939 Query: 602 -NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEG----LMMQHAQNLEF 652 N+ ++ G V ++ + L+Q + L+G L ++ + L+F Sbjct: 940 GNLLGSEQSG--------HIVGVGFELYCQLLKQSVARLKGDATALQIRASVKLDF 987 Score = 153 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 18/262 (6%) Query: 38 LGVTGSGKTFTIANVIADLQRPTM-VLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYY 96 +GV + + I + + ++A N LA QL ++ F + + + + Y+ Sbjct: 24 IGVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYF 83 Query: 97 QPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVV-VASVSAIYGLGDP-DLY 154 E + + R++A ++ + D +V V + A+ D Sbjct: 84 PEETELSEDEDSPVDRF----ETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVDAL 139 Query: 155 LKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRV 214 L L G ++ +L L Y G F RG +ID++P S D R+ Sbjct: 140 TASQLVLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPI-SADTPYRI 198 Query: 215 ELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVL 274 + F +E++ + DP+T + + I P + A + L AR Sbjct: 199 DFFGDEIDAIKELDPVTQRSGAPTESIAIDAA-----PTLELKPAPNGYADHLPARSAWA 253 Query: 275 LENNKLLEEQRLTQRTQFDLEM 296 L LE +L + LE Sbjct: 254 L-----LEPDQLMESFDSALEQ 270 >UniRef50_B7QFN5 ATP-dependent RNA helicase, putative n=1 Tax=Ixodes scapularis RepID=B7QFN5_IXOSC Length = 519 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 109/325 (33%), Gaps = 40/325 (12%) Query: 316 RGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNR 375 P L D L + ++ S++ + + M + Sbjct: 220 HICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIR--------------- 264 Query: 376 PLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRP 427 K + QT+ SAT + + + + D V G D ++ V Sbjct: 265 --KIVDQTRPDRQTVMWSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQ 322 Query: 428 VATQVDDLLSEIRQRAAIN-ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERM 486 + + LL +R+ A +R L+ TK + + L ++G R H D+ +R Sbjct: 323 GFEKEEKLLETLREINAEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRD 382 Query: 487 EIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 + R G+ +LV ++ GLD+ ++ V D + + S + IGR R+ Sbjct: 383 IALDRFRSGKTPILVATDVAARGLDVSDIKYVINYD-----YPDTSESYVHRIGRTGRSN 437 Query: 547 N-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAK 605 G AI AK + + E +Q+ N E + N + Sbjct: 438 RSGTAITLFTPDNAGQAKQLVSVLQ--EAKQEVNPELLELVD------RQVSQKFANRRR 489 Query: 606 TKAKGRGKSRPIVEPDNVPMDMSPK 630 A+ RP + D + + Sbjct: 490 RPAQQSWDRRPQHRQGDRFGDYAQE 514 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 82/644 (12%), Positives = 185/644 (28%), Gaps = 123/644 (19%) Query: 15 GDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLY 74 Q + + + G + + +AN + +V+A + A Sbjct: 7 FLQENSFPAISLFENADNEAIHVNGASVPLASMMVANRFLKSPQNILVIAKDYRSAEVWV 66 Query: 75 GEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAML-ER 133 ++ E V +F PS + E + + RL + + Sbjct: 67 ENLESMVGEEFVRFF-------------PSLGLKPYEIKVPFEGVLEERLKFFRDVSHTE 113 Query: 134 RDVVVVASVSA-IYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGT 192 + VVV + A + L +P ++ + L VG ++ ++ + + G Sbjct: 114 KPFVVVCPLDAFLMKLPEPGEIMRQVRTLRVGDQLEPSSLRPWFLDHGFVEQPMVSGVGE 173 Query: 193 FRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTP 252 F +RG ++D+ +R+E + +E+E + FD + + + + +P + P Sbjct: 174 FSIRGCIVDVNCLLY-PHPIRIEFYGDEIESIRAFDIFSQRSLEQMTHIEFFPMGEFTVP 232 Query: 253 RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRF 312 + ++ S + Sbjct: 233 ESVMAGEECSVE---------------------------------------------SLW 247 Query: 313 LSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSAL 372 +L DY+P L+ +E + MY R + + + Sbjct: 248 WHRPHHQRLVASLLDYMPRASLVF-EELSLLSETASKMYGAFRGAYDEARVTDAGVAAPA 306 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV 432 D K E L + T ++ G+ + +RP + Sbjct: 307 D-IWFKIGELSRLFVGRASLDMT----RVKVDDGNWHEMHMRP---------QDFTSNGT 352 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 D + EI + RV V T L E + ++ Sbjct: 353 DAVAKEIEEFYDKGGRVYVMAQTLGGVNRLREIFDGLPIEDYFI---------------- 396 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAIL 552 L EG + + ++ + ++ + ++ I Sbjct: 397 -----------GNLSEGFWLEDDNVAFLTESRILNRHAN-KARKHKIA------------ 432 Query: 553 YGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVD---ILALGQNIAKTKAK 609 G M +++ + + G+ +N +VD + G + K Sbjct: 433 -GSVTNALMVESLNRGDLVAHEDHGIGRYLGLVRVEVNGGMVDCALLEYDGGDRLKFPVS 491 Query: 610 GRGKSRPIVEPDNVPMD---MSPKALQQKIHELEGLMMQHAQNL 650 K + P+++ + K + ++ ++Q A++L Sbjct: 492 DLQKIERLDRPEDIETKLDRLGSKTWENIKKRVKQKVIQIARDL 535 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 67/426 (15%), Positives = 138/426 (32%), Gaps = 38/426 (8%) Query: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304 P + + ++ K + N ++ T E E Sbjct: 588 PMDRLICGDVGFGKTEVAMRAAF----KCVSSNKQVAILVPTTILAAQHYENFCERFAAY 643 Query: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364 ++ ++ + +F + A + +V +H + + ++ Sbjct: 644 PVK--IALMNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKF 701 Query: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424 G + L LA T+ +SATP L S V D + T ++ + Sbjct: 702 GVKQKEKLRQL--------RLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPV 753 Query: 425 VRPVATQVDDLLS-EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERV--RYLHSDID 481 + + D++L I A +V V + LTE +E H ++ Sbjct: 754 ETKLMQRDDEVLKNAILDELARGGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVAHGQME 813 Query: 482 TVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR 541 E ++ +FD+LV +++ GLD+P + + I++A G + L Q GR Sbjct: 814 DHELERVMDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQ----LYQMRGR 869 Query: 542 AARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ 601 R+ + + P + I + RR K + + G G + D+ G Sbjct: 870 VGRSS---VLAKAFLVIPQRGE-ISQESMRRLKALEQFTDLG---SGYQLAMRDLEIRGA 922 Query: 602 NIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFE---EAAQI 658 + + V + + +++ + L G ++ E +A Sbjct: 923 GNLLGQEQHGF-------IAEVGFETYVRLVREAVEMLRGGALEKPIQPRVEIGVDAYLP 975 Query: 659 RDQLHQ 664 D + Sbjct: 976 EDYVED 981 >UniRef50_Q9M2F9 DEAD-box ATP-dependent RNA helicase 52 n=13 Tax=Eukaryota RepID=RH52_ARATH Length = 646 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 93/268 (34%), Gaps = 31/268 (11%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + + + + M + + + + Sbjct: 281 TPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ-------------QMD 327 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGL----LDPIIEVRPV------AT 430 QT+ SAT + + + + G D I++ + Sbjct: 328 MPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRS 387 Query: 431 QVDDLLSEIRQRAAINER--VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEI 488 + DLL R+ ++ LV TK+ A+ L +L +G +H D ER Sbjct: 388 HLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVA 447 Query: 489 IRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVN 547 +R + G +LV ++ GLD+P V+ V D + + IGR R + Sbjct: 448 LRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPND-----IDDYVHRIGRTGRAGNS 502 Query: 548 GKAILYGDKITPSMAKAIGETERRREKQ 575 G A + + +MAK + E + ++ Sbjct: 503 GLATAFFNDNNTTMAKPLAELMQEANQE 530 >UniRef50_B9Y818 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y818_9FIRM Length = 556 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 115/332 (34%), Gaps = 17/332 (5%) Query: 277 NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLV 336 + K + L+ + +++ +E+ + + R ++ G + + + L +V Sbjct: 67 DRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQILE-LKKGADIV 125 Query: 337 VDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSAT 395 V + I R D+ R L E L E QT+ SAT Sbjct: 126 VGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQQRQTVLFSAT 185 Query: 396 PGNYELEKSGGDVVDQV-------VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINER 448 LE + + V T ++ + V P + + L+ I Sbjct: 186 MPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQLI--SMQNPHL 243 Query: 449 VLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE 508 ++ TK+M ++LT L G LH D+ R ++ + + G+ ++LV ++ Sbjct: 244 AMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINILVATDVAAR 303 Query: 509 GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGE 567 G+D+ + +V D + + IGR R G A+ + + Sbjct: 304 GIDVDSMDVVFNYDLP-----QESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRDLER 358 Query: 568 TERRREKQQKYNEEHGITPQGLNKKVVDILAL 599 T R + Q+ + L+ D+ Sbjct: 359 TTRSKLTQKPLPSLEEVRKIRLDFLREDLEHR 390 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 105/295 (35%), Gaps = 30/295 (10%) Query: 384 ALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLS-EIRQR 442 A + +SATP L S D + T + V D +++ IR+ Sbjct: 699 AAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPVQTYVVENNDTIIANAIRRE 758 Query: 443 AAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLGEFDVL 500 +V + + +++E R H + ++ D G++D+L Sbjct: 759 MKRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDIL 818 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPS 560 + +++ GLD+ + + + +AD G + L Q GR R+ + A Y Sbjct: 819 LATSIVENGLDVANANTIIVYNADHFGLSQ----LYQMRGRVGRSHH-MAFAYF---VYQ 870 Query: 561 MAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEP 620 K + ET +R + K E G G + D+ G + Sbjct: 871 ADKILTETAEKRLQAMKEFAELG---AGFKIAMRDLEIRGAGNLLGAQQ-------HGHI 920 Query: 621 DNVPMDMSPKALQQKIHELEG------LMMQHAQNLEFE---EAAQIRDQLHQLR 666 +V +M K L++ + L+ + +L+ E + I D +H++ Sbjct: 921 ASVGFEMYCKLLEEAVERLQNGKAPEEAPPEPVIDLQTEAYIDGGFIADAMHKIE 975 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/354 (18%), Positives = 127/354 (35%), Gaps = 33/354 (9%) Query: 9 SAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKT 68 +A + Q A++RL + + + G+ GS K +A A L + +L + Sbjct: 2 NALFAAMLQDGALQRLRDHTQGEPRESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAE 61 Query: 69 LAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATK 128 A ++ PE P +P DTF K A+ ++ R+ Sbjct: 62 SLADWKEDLSLLLPE-------------VPIVELPEVDTFDVKAAAKSQERAARRMEVLG 108 Query: 129 AMLERRDVVVVASVSAIYGLGD-PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQA 187 ++ ++V+A A G + + ++ L L +G ++ + +L RL +L Y ++ Sbjct: 109 RLVRGEHIIVLARTEAAVQKGMGRNEFKRLSLTLRMGEVLPREELLERLVDLGYEHAEEV 168 Query: 188 FQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKT 247 + G F VRG ++DIF A + + +RVE FD+E++ L FD T + + TI P Sbjct: 169 ERVGQFSVRGGIVDIF-AINAAVPVRVEYFDDEIDSLREFDLDTKRSTKNVGAATIMPLA 227 Query: 248 HYVTP-----------------RERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRT 290 + + + I+ + + + E + Sbjct: 228 QTDASGKPELFLSYLEGKGTVLFDEPTRIRDTIRTMVKENPDIKGKIFSWEELLQAAHGN 287 Query: 291 QFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTI 344 + + L G + P D L + + + + Sbjct: 288 RIVYMALL-LQQVPGADAVENIGVTATTMTPFRRQMDLLENEANRWLAQKQRVL 340 >UniRef50_C0EAN9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAN9_9CLOT Length = 563 Score = 185 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 66/393 (16%), Positives = 120/393 (30%), Gaps = 25/393 (6%) Query: 275 LENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL 334 E + L + ++ +E+ + + R + G + L Sbjct: 69 EELRNKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMR-LKRGAN 127 Query: 335 LVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 +VV + + + D + L E L + QTI S Sbjct: 128 IVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTILFS 187 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLDPI---IEVRPVA---TQVDDLLSEIRQRAAINE 447 AT L + D + IE + + D L I Q Sbjct: 188 ATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYH-DPA 246 Query: 448 RVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLR 507 ++ TKRM +++T +L+ G LH D+ +R +++ + G +LV ++ Sbjct: 247 LSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVAA 306 Query: 508 EGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIG 566 G+D+ V V D +++ + IGR R GKA+ + Sbjct: 307 RGIDVNNVDYVINYDVP-----QNQEYYVHRIGRTGRAGKEGKAVTICSG--RRQVDELY 359 Query: 567 ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 R + K P G + + + + + A V + V Sbjct: 360 HIVRMTKSTIKRES----LPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKG 415 Query: 627 MSPKALQQKIHELEGLMMQHAQNLEFEEAAQIR 659 +P I + M +F E Q R Sbjct: 416 YNP----TTIAAVALEMAFGRPKTDFPEIKQFR 444 >UniRef50_A8P4I3 ATP-dependent RNA helicase An3, putative n=2 Tax=Brugia malayi RepID=A8P4I3_BRUMA Length = 754 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 104/326 (31%), Gaps = 40/326 (12%) Query: 303 CSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 G ENY ++ G P L D + + + + + + M Sbjct: 408 YGGRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEP 467 Query: 358 KETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGD-VVDQVVRPT 416 + + ++P T SAT + + + V Sbjct: 468 QIRQIVDLSKMPPKGQRV-------------TAMFSATFPKEIQVLAQDFLMPNYVFLAV 514 Query: 417 GLLDPIIE------VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHG 470 G + E V + L ++ + LV TKR A DL YL++ G Sbjct: 515 GRVGSTSENIMQKIVWVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDG 574 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H D+ +R + + R G +LV + GLD+P V V D + Sbjct: 575 YNVVAIHGDLKQFDREKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSD---- 630 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGL 589 + IGR R N G A + + ++A+ + E E + P+ L Sbjct: 631 -IDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARDLAELVV---------EANQELPEWL 680 Query: 590 NKKVVDILALGQNIAKTKAKGRGKSR 615 K D G + K R R Sbjct: 681 EKISADAQRYGTRPGRAKGGSRFGGR 706 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 76/437 (17%), Positives = 137/437 (31%), Gaps = 57/437 (13%) Query: 41 TGSGKTFT-IANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPE 99 + K+F I + I + ++ +++ N+ A QLY + F P + YF Sbjct: 7 PQAAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYF---------- 56 Query: 100 AYVPSSDTFIEKDASVNEHIEQMRLSATKAMLE--RRDVVVVASVSAIYGLGDPDLYLKM 157 PS DT S N +I R + +V+ + + + L D + K Sbjct: 57 ---PSYDTIPYDHTSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKY 113 Query: 158 MLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELF 217 L L M + + + L E + RN G F VRGE++D+ ES R+ Sbjct: 114 YLKLFPKMKLSANELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESKG--YRINFS 171 Query: 218 DEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLEN 277 + VE + FD T + I P V E I + Sbjct: 172 WDYVESIKQFDIDTQISTRSCNELIISPANEIVLNPETISNFKDNYLRNFG--------- 222 Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVV 337 + E + SG E G L DYL ++ Sbjct: 223 --------VNHTDNPLYEAITGGRKFSGYEQLLPLFYDSYSG-----LTDYLNNPVIIFD 269 Query: 338 DESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + I + Y + N+ + L+P +Y ++ Sbjct: 270 NLTKQAILEFEHSYNDFYKARLDA------------NKLKFNSFYPTLSPSQLYFTSLEA 317 Query: 398 NYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQV---DDLLSEIRQRAAINERVLVTTL 454 LE+ ++ + I + D L I +A +++++ + Sbjct: 318 IELLEQENNILISYENSEQASIVENIAAASFVEKKTIFDKLFEVI--KANSRKKIIIGSS 375 Query: 455 TKRMAEDLTEYLEEHGE 471 E + +E + Sbjct: 376 VLSSFERVKSIIENYEY 392 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 103/299 (34%), Gaps = 30/299 (10%) Query: 379 FEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSE 438 F + + + +SATP L+ S + + + T L+ + V ++ + Sbjct: 721 FLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRD 780 Query: 439 -IRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRY--LHSDIDTVERMEIIRDLRLG 495 + + ED+ + L++ + Y H + + EI+ + G Sbjct: 781 ALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAG 840 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGD 555 +FD+L+ ++ G+D+ + + + I AD G + L Q GR R GK Y Sbjct: 841 KFDILISTTIIESGIDIQDANTMIIHKADMLGLSQ----LYQLRGRIGR---GKMRGYAY 893 Query: 556 KITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSR 615 PS K + RR E Q G D+ G + + Sbjct: 894 LTLPSHKKMTPHSLRRLEIIQNSCA----LGSGFTIASHDMDLRGFGNLIGEEQSG---- 945 Query: 616 PIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLE---------FEEAAQIRDQLHQL 665 + V ++ + L+++I + + Q F + D + +L Sbjct: 946 ---QIREVGTELYQEMLEEQIAIFKDEPISGEQPFIPTINLGLSVFIPDNYVSDSVLKL 1001 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 91/655 (13%), Positives = 190/655 (29%), Gaps = 121/655 (18%) Query: 45 KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPS 104 ++ +A + ++P +V+ P+ A +++++ +A Q A + + Sbjct: 81 RSAIVAALAK--KKPVVVIVPSSRDAEDFIASVRDWYDGDA-----------QDVAKLEA 127 Query: 105 SDTFIEKDASVNEHIEQMRLSATKAMLERRD--------VVVVASVSAIYGLGDPDLYLK 156 +T + S R++ + + + V+V V ++ + Sbjct: 128 WETLPHERLSPRADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVVEGIGDI 187 Query: 157 MMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVEL 216 L G + ++RL E Y R D +RG F VRG +ID+F A + +R+E Sbjct: 188 DPLLFECGKELTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVF-APTMTHPVRIEF 246 Query: 217 FDEEVERLSLFDPLTGQIVS-TIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLL 275 F +E++ + F + I P + +A I Sbjct: 247 FGDEIDTIKQFHASDQRTYGNNIASIWATPCRELQITEKICKRARSLIGS---------- 296 Query: 276 ENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLL 335 LE + G+E+ L R ++ + LP + ++ Sbjct: 297 -----------IPNADDMLESIANSIPVEGMESLLPALVDR-----MESVQNMLPKESVI 340 Query: 336 VVDESH---VTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 ++ + + A + G P+ F++ L Sbjct: 341 ILSDPEKCRRAADDVTATANEFLAASWHVAASG-----HGSGAPITFDQANFLDFDETIS 395 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVT 452 S N+++ K VD + P + + I V +T Sbjct: 396 SLELSNHDVWKLTSFGVDN-QIYGNIALPASAPQEFRGDESKVSGGITSLVDNGFAVTIT 454 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 L +H + + +G + Sbjct: 455 AAASGTLARLRRA-----IYATGVH-------------EFTTVRSSI-------SDGF-I 488 Query: 513 PEV-SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERR 571 V + + + D GK+ TP + + Sbjct: 489 DNVARIAILTERDL---------------------TGKSSASAQLKTPKRRRKAIDLMEL 527 Query: 572 REKQQKYNEEHGI----TPQGLNKKV------VDILALGQNIAKTKAKGRGKSRPIVEPD 621 + +E+HGI + N V + L + +K A P + D Sbjct: 528 KPGDFVVHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPNDKLFIPTDQLD 587 Query: 622 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL---RELFIAAS 673 V + + K+++L G + + +I + L +L R+ + Sbjct: 588 LVSKYIGAEI--PKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFA 640 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 51/316 (16%), Positives = 101/316 (31%), Gaps = 31/316 (9%) Query: 329 LPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQ 388 L + VV +H + + +G L Sbjct: 757 LQDGSIDVVIGTHKLLNPSIKFKDLGLVIIDEEQRFGVEHKETLKAL--------RTNVD 808 Query: 389 TIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPV-ATQVDDLLSEIRQRAAINE 447 + +SATP LE + + + T D + + V A + + I++ Sbjct: 809 VLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGG 868 Query: 448 RVLVTTLTKRMAEDLTEYLEEH--GERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 +V + ++E RV H + + +IRD + DVLV + Sbjct: 869 QVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTI 928 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAI 565 + GLD+ + + + AD+ G + L Q GR R Y + +K + Sbjct: 929 IETGLDISNANTLIVDHADRFGLSQ----LHQLRGRVGRGHER---AYAYFL-YDPSKPM 980 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ-NIAKTKAKGRGKSRPIVEPDNVP 624 + R +H G + + D+ G N+ + G + V Sbjct: 981 TQQSHDRLSTI---AQHTALGSGFDVAMKDLELRGTGNLLGDEQSG--------HIEGVG 1029 Query: 625 MDMSPKALQQKIHELE 640 D+ + + + + + + Sbjct: 1030 FDLYVRMVSEAVEKYK 1045 >UniRef50_A6VJ89 DEAD/DEAH box helicase domain protein n=5 Tax=Euryarchaeota RepID=A6VJ89_METM7 Length = 546 Score = 185 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 51/392 (13%), Positives = 122/392 (31%), Gaps = 32/392 (8%) Query: 272 KVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPA 331 + + E+++ + L + +++ E+ G + + F G+ L Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVF--PVYGGQSIDRQIRELKR 120 Query: 332 DGLLVVDESHVTIPQI-GGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTI 390 +VV + I + + L E L + + + + + + Sbjct: 121 GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTEKRML 180 Query: 391 YVSATPGNYELEKSGGDVVDQVVRPTGL-------LDPIIEVRPVATQVDDLLSEIRQRA 443 SAT + ++ + + + + D + + L I Sbjct: 181 LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSRIIDVEK 240 Query: 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGI 503 L+ TK ++++ L E G LH D+ +R + + + + +VLV Sbjct: 241 EFYG--LIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINVLVAT 298 Query: 504 NLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMA 562 ++ G+D+ +++ V D ++ S + IGR R G A+ + + Sbjct: 299 DVAARGIDINDLTHVVNYDIP-----QNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353 Query: 563 KAIGETERRREKQQKYNEEHGITPQGLNK------------KVVDILALGQNIAK--TKA 608 K I + ++++ + I K K D + + + Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQ 413 Query: 609 KGRGKSRPIVEPDNVPMDMSPKALQQKIHELE 640 + D + + + E Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANREGR 445 >UniRef50_C5EJJ1 DEAD/DEAH box helicase domain-containing protein n=7 Tax=cellular organisms RepID=C5EJJ1_9FIRM Length = 572 Score = 185 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 127/367 (34%), Gaps = 14/367 (3%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 K L+ L + +++ E+ + + ++ L G + + L +VV Sbjct: 71 KKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRS-LKDGTQIVVG 129 Query: 339 ESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPG 397 + + + D L E L QT+ SAT Sbjct: 130 TPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189 Query: 398 NYELEKSGGDVVDQV---VRPTGLLDPIIEVRPVATQVDDLLSEIRQRAA--INERVLVT 452 + + D V V L P + + + + + + + +V Sbjct: 190 QAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSIVF 249 Query: 453 TLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDM 512 TKR ++L + L+ G LH D+ V+R ++ R G D+LV ++ G+D+ Sbjct: 250 CNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGIDV 309 Query: 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERR 571 +V V D + + + IGR R GKA + I + Sbjct: 310 GDVEAVFNYDVP-----QDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKT 364 Query: 572 REKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKA 631 + Q + IT + K + ++ + + TK + + ++E D MD++ Sbjct: 365 KIIPQAIPSLNDITEIKVEKVLDQVMDILNDNDLTKMVNIIE-KKLIEEDYTSMDLAAAL 423 Query: 632 LQQKIHE 638 L+ + + Sbjct: 424 LKMNMGD 430 >UniRef50_B6K911 DEAD/DEAH box helicase, putative n=3 Tax=Toxoplasma gondii RepID=B6K911_TOXGO Length = 685 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 97/287 (33%), Gaps = 38/287 (13%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D+L + S++ + + M + K Sbjct: 420 TPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQVR-----------------KIF 462 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---------PTGLLDPIIEVRPVATQ 431 QT+ SAT + +VV+ + IEV + Q Sbjct: 463 SQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVVS-SNQ 521 Query: 432 VDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 + L + Q ++ L+ TKR + L L R +H D + ER I+ D Sbjct: 522 LQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDRILHD 581 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R G+ ++L+ ++ GLD+ +V V D ++ S I IGR R G A Sbjct: 582 FRKGDCEILLATDVASRGLDIQDVKFVINYDVP-----KNIESYIHRIGRTGRAGNKGTA 636 Query: 551 ILYGDKITPSMAKA-----IGETERRREKQQKYNEEHGITPQGLNKK 592 I + S K I E R ++ + E P+ +K Sbjct: 637 ISFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKIGAPRAPSKS 683 >UniRef50_Q65XX1 Vasa-and belle-like helicase protein 1, isoform c n=3 Tax=Caenorhabditis elegans RepID=Q65XX1_CAEEL Length = 660 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 92/297 (30%), Gaps = 34/297 (11%) Query: 296 MMNELGYCSGIENYSRFLSGRGPGEP-----PPTLFDYLPADGLLVVDESHVTIPQIGGM 350 + G ENY ++ G P L D + + + ++ + + M Sbjct: 250 NIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRM 309 Query: 351 YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVD 410 + + P A T SAT + + D Sbjct: 310 LDMGFEPQIRKIVGQGMPP--------------KTARTTAMFSATFPKEIQVLAKDFLKD 355 Query: 411 QVVR----PTGLLDPIIEVR----PVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G IE R + +L+ + + N VLV TKR A +L Sbjct: 356 NYIFLAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSEN-LVLVFVETKRGANEL 414 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 +L R +H D+ +ER + R G+ +LV + GLD+P V V D Sbjct: 415 AYFLNRQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYD 474 Query: 523 ADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKY 578 + IGR R N G A + + + + + ++ Sbjct: 475 LP-----GDSDEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPE 526 >UniRef50_B6R5V0 ATP-dependent rna helicase, dead/deah box family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5V0_9RHOB Length = 453 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 113/328 (34%), Gaps = 19/328 (5%) Query: 263 IKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPP 322 ++ L +R + ++ + L + + + + + + S G P Sbjct: 61 LQRLLESRYRAAPKSVRSLILTPTRELADQITKNIKAYAGRTKM-----YTSCVVGGVPF 115 Query: 323 PTLFDYLPADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEE 381 P F L ++V + D L E L + Sbjct: 116 PPQFHALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAY 175 Query: 382 FEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE-VRPVATQVDD-----L 435 QT++ SAT + S + + V T +E V ++ L Sbjct: 176 LLPKKRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPL 235 Query: 436 LSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 L E+ ++ ER LV TLTK+ + L L G +H D+ ER + + + G Sbjct: 236 LKELLEK-DECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRG 294 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYG 554 + LV ++ G+D+ ++S V D + + + IGR AR +G AI + Sbjct: 295 KLKTLVATDVAARGIDVSDISHVINFDMP-----NATENYVHRIGRTARAGKSGTAITFC 349 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEH 582 M +AI + ++ + Sbjct: 350 LPEDRGMLRAIQKLIGKKIAEMDGFTFF 377 >UniRef50_Q17KA8 DEAD box ATP-dependent RNA helicase n=4 Tax=Eukaryota RepID=Q17KA8_AEDAE Length = 718 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 52/344 (15%), Positives = 111/344 (32%), Gaps = 35/344 (10%) Query: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300 I P +++ + R+++ I LA R++ + + + R + Sbjct: 154 AYILPALIHISNQPRLLRGDGPIALVLAPTRELAQQ---IQQVCNDFGRRMSIMNTCIFG 210 Query: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360 G + P L D+L + + +++ + + M + Sbjct: 211 GASKHPQADDLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIR 270 Query: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420 K Q + SAT + + + + + G L+ Sbjct: 271 -----------------KIISQIRPDRQVLMWSATWPKEIRKLAEEFLREYIQINIGSLN 313 Query: 421 --------PIIEVRPVATQVDDLLSEIRQRAAINE-RVLVTTLTKRMAEDLTEYLEEHGE 471 IIE + L + + + + + ++ TKR + +T ++ +G Sbjct: 314 LAANENIMQIIECCEEYEKETRLFKLLTELSQQGDSKSIIFVETKRKVDQITNVIKRNGW 373 Query: 472 RVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS 531 R +H D +R ++ R +LV ++ GLD+ +V V D F + Sbjct: 374 RCDGIHGDKTQKDRDYVLNTFRRLRSGILVATDVASRGLDVDDVKYVINFD-----FPNN 428 Query: 532 ERSLIQTIGRAARN-VNGKAILYGDKITPSMAKAIGETERRREK 574 I IGR R+ G + + + A + R + Sbjct: 429 TEDYIHRIGRTGRSTNKGTSYTFFTPANGAKAGDLIGVLREANQ 472 >UniRef50_B0P7Y4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7Y4_9FIRM Length = 572 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 104/330 (31%), Gaps = 33/330 (10%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + D V + + M L + Sbjct: 129 TPGRVMDHMRRHTLRLDDLRTVVLDEADEM-----------------LNMGFLDDIQTIL 171 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE------VRPVATQVDD 434 QT+ SAT L+ + + D I R + D Sbjct: 172 AETPDTRQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMD 231 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L+ + Q +R +V TK M + LTEYL +HG R +H D+ R ++++ R Sbjct: 232 ALNLLLQYH-DPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRD 290 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYG 554 G+ +LV ++ G+D+ + V D + I IGR R G+ + Sbjct: 291 GKTRILVATDVAARGIDVENIEAVFNFDIP-----QEFEHYIHRIGRTGRA--GRTGMSH 343 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKS 614 + + RR I + + KK A + G+ Sbjct: 344 TLVCGARQVDTIRQLRRFINADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKWGE 403 Query: 615 RPIVEPDNVPMDMSPK--ALQQKIHELEGL 642 + DM AL Q I + Sbjct: 404 QLDAIAAERGCDMRDIACALAQMIAARDKK 433 >UniRef50_C6HUU6 Putative ATP-dependent helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUU6_9BACT Length = 472 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 95/313 (30%), Gaps = 15/313 (4%) Query: 267 LAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLF 326 L + + Q L +L E + G Sbjct: 57 LPSLHRNKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQI 116 Query: 327 DYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEAL 385 D+L LV+ I + L E L + Sbjct: 117 DFLRRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHP 176 Query: 386 APQTIYVSATPGNYELEKSGGDVVDQVVR--------PTGLLDPIIEVRPVATQVDDLLS 437 QT+ +AT + D V+ P + ++ + A + L + Sbjct: 177 ERQTLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKT 236 Query: 438 EIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEF 497 + + + L+ T TKR AEDL L G LH D +R ++ R G+ Sbjct: 237 ILTEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQT 296 Query: 498 DVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDK 556 +LV ++ GLD+ V+ V D +S + IGR R G+AI + Sbjct: 297 RILVATDVAARGLDIDTVTCVINYDLP-----QSPEDYVHRIGRTGRAGRSGRAISFCHP 351 Query: 557 ITPSMAKAIGETE 569 ++ + I Sbjct: 352 ADRNLLRDIERLL 364 >UniRef50_A2EVI2 DEAD/DEAH box helicase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EVI2_TRIVA Length = 598 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 108/312 (34%), Gaps = 35/312 (11%) Query: 292 FDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMY 351 + G G + P L D++ + + + + + M Sbjct: 226 MIRQTCLFGGAGRGPQANDLRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQML 285 Query: 352 RGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQ 411 + + + QT+ SAT + + +VD Sbjct: 286 DMGFEPQIRKIIGH-----------------ISKDRQTMMFSATWPKEIQQLAADFLVDP 328 Query: 412 VVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLT 463 V G D +I ++ L + + ++++++ T TKR +DL Sbjct: 329 VHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVLNEHK--DDKIIIFTKTKRTTDDLQ 386 Query: 464 EYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDA 523 E L G + LH D +R ++ R + +LV ++ GLD+ ++ +V D Sbjct: 387 ENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDVAARGLDVNDIDIVINYD- 445 Query: 524 DKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQK--YNE 580 F + + IGR AR G A+ + +M++ + + + +++ Sbjct: 446 ----FPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKLAKIMTQAKQELPDWLKA 501 Query: 581 EHGITPQGLNKK 592 +TP+G K+ Sbjct: 502 LADVTPKGAWKE 513 >UniRef50_Q388E8 ATP-dependent DEAD/H RNA helicase, putative n=4 Tax=Trypanosoma RepID=Q388E8_9TRYP Length = 660 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 91/285 (31%), Gaps = 26/285 (9%) Query: 300 LGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKE 359 G + + + P L D + + + + + M + Sbjct: 272 GGADPRHQVHELSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQI 331 Query: 360 TLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLL 419 ++ G + A QT+ SAT + + G + Sbjct: 332 RMIVQGP-----------DSDMPRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRV 380 Query: 420 DPIIE-----VRPVAT--QVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGER 472 E VR + + LL+ +R+ + VLV KR A+ L +L Sbjct: 381 GSTTENITQDVRWIEDPDKRQALLTLLRE--NEGKLVLVFVEKKRDADYLERFLRNSELA 438 Query: 473 VRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSE 532 +H D ER E +R + G VLV ++ GLD+P V +V D + Sbjct: 439 CVSIHGDRVQREREEALRLFKSGACQVLVATDVASRGLDIPNVGVVIQYDMPS-----NI 493 Query: 533 RSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQ 576 + IGR R G AI + ++ ++ + + Sbjct: 494 DDYVHRIGRTGRAGKVGVAISFFNEKNRNIVDDLIPLLNETNQVI 538 >UniRef50_A9NFC3 DEAD box ATP-dependent RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFC3_ACHLI Length = 547 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 14/293 (4%) Query: 319 GEPPPTLFDYLPADGLLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPL 377 GE F L ++V I I TL E L + Sbjct: 109 GESYEKQFKELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIE 168 Query: 378 KFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTG----LLDPIIEVRPVATQVD 433 + + QT+ SAT + + + + + +D I + + + + Sbjct: 169 RILQTTPETRQTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKE 228 Query: 434 D--LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRD 491 LL + ++ TK A+ +TE L++ G LH D+ +R ++ Sbjct: 229 KQSLLERLLDF-ENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNR 287 Query: 492 LRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKA 550 R + +LV ++ GLD+ +V ++ D + + + IGR R GKA Sbjct: 288 FRSKQLSILVATDVAARGLDVDDVEIIVNYDLP-----QQDEIYVHRIGRTGRAGKKGKA 342 Query: 551 ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603 + + M + + K+ + + + L I N Sbjct: 343 FTFVTPLKRRMLDMLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANE 395 >UniRef50_C1IBN1 DEAD-box ATP dependent DNA helicase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IBN1_9CLOT Length = 526 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 52/342 (15%), Positives = 111/342 (32%), Gaps = 15/342 (4%) Query: 274 LLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADG 333 + L L + +++ +EL S ++ + G+P L + Sbjct: 65 HISKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTIL--PVYGGDPITNQIRALKRNV 122 Query: 334 LLVVDESHVTIPQIGG-MYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 +VV + I + D+ + L E L + + QT+ Sbjct: 123 NIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLLF 182 Query: 393 SATPGNYELEKSGGDVV----DQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAIN-- 446 SAT + + + + ++ T + I + + + Sbjct: 183 SATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTP 242 Query: 447 ERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLL 506 ++ TK+ ++L E ++ G V +H D+ R+ ++ + G + LV ++ Sbjct: 243 SSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVA 302 Query: 507 REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAI 565 G+D+ ++ V D + S + IGR R G A SM K I Sbjct: 303 ARGIDVEGITHVINYDLP-----QDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQI 357 Query: 566 GETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTK 607 + ++ + I + D+ + +K Sbjct: 358 KSVTKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSK 399 >UniRef50_B9SAJ6 Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO Length = 956 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 104/328 (31%), Gaps = 22/328 (6%) Query: 314 SGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIG-GMYRGDRARKETLVEYGFRLPSAL 372 + G P L +VV + + L E L Sbjct: 592 TCLYGGAPKGPQLKELTRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGF 651 Query: 373 DNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---------PII 423 + + K QT+ +AT + + +V+ V G +D + Sbjct: 652 EPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYV 711 Query: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483 EV P + + L +I + +V++ TKR+ + L + H +H D Sbjct: 712 EVVPQMEK-ESRLGQILRAQERGSKVIIFCSTKRLCDQLARSI-GHQFGAAAIHGDKSQG 769 Query: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543 ER ++ R G+ +LV ++ GLD+ ++ +V D F + IGR Sbjct: 770 ERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYD-----FPTGIEDYVHRIGRTG 824 Query: 544 RNVNGKAILYGDKI--TPSMAKAIGETERRREKQQKYNEEHGITPQGLN---KKVVDILA 598 R + I T M + E ++K E GI + + Sbjct: 825 RAGATGVNVAAHMIATTIWMVVDVDVEEEGLMVEEKLLTEVGIEVLAVVLKDRSRSRSYD 884 Query: 599 LGQNIAKTKAKGRGKSRPIVEPDNVPMD 626 + ++ + + P E M Sbjct: 885 RFERPRVSRFDEKDVTAPGSEAPESGMS 912 >UniRef50_Q9VHP0 ATP-dependent RNA helicase bel n=13 Tax=Eukaryota RepID=DDX3_DROME Length = 798 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 113/359 (31%), Gaps = 31/359 (8%) Query: 243 IYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGY 302 +Y H P+ + + ++ EE + + G Sbjct: 357 MYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGN 416 Query: 303 CSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLV 362 + + P L D + + + + + + + M + + Sbjct: 417 NTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRI 476 Query: 363 EYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPI 422 +P QT+ SAT E + + + + G + Sbjct: 477 VEQLNMPPTGQR-------------QTLMFSATFPKQIQELASDFLSNYIFLAVGRVGST 523 Query: 423 ----------IEVRPVATQVDDLLSEIRQ--RAAINERVLVTTLTKRMAEDLTEYLEEHG 470 + + + DLLS IR + L+ TK+ A+ L E+L + Sbjct: 524 SENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCN 583 Query: 471 ERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLR 530 V +H D ER E +R R G+ +LV + GLD+P V V D + Sbjct: 584 HPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSD---- 639 Query: 531 SERSLIQTIGRAARNVN-GKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQG 588 + IGR R N G A + ++ ++ + E +++ E + +G Sbjct: 640 -VEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETKQEIPSFMEDMSSDRG 697 >UniRef50_A8SKI7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKI7_9FIRM Length = 580 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 100/294 (34%), Gaps = 28/294 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P + D++ L + + + M+ K Sbjct: 128 TPGRVIDHIKRKTLKTENIKTFVLDEADEMFD-----------------MGFREDIEKII 170 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD---PIIEVRPVATQVDDLLS 437 F QT + SAT + ++ + + + + P + A + + L Sbjct: 171 GFLPYERQTTFFSATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLE 230 Query: 438 EIRQRAA--INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLG 495 + + + +V TK+M +DLT L+ G LH D+ ++R ++ R Sbjct: 231 ILSRILDVQNPKLTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNS 290 Query: 496 EFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYG 554 D+LV ++ G+D+ +V LV D + + IGR AR G AI + Sbjct: 291 TIDILVATDVAARGIDVDDVDLVINYDMP-----QDVEYYVHRIGRTARAGREGTAISFV 345 Query: 555 DKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKA 608 + I + + + +++ + + + + DI TK Sbjct: 346 SPREMNTLSQIQKYTKTKIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKE 399 >UniRef50_Q5APT8 ATP-dependent RNA helicase DBP3 n=4 Tax=Candida RepID=DBP3_CANAL Length = 564 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 107/335 (31%), Gaps = 36/335 (10%) Query: 273 VLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPAD 332 E + + + + + G S + + + P L D + Sbjct: 231 PTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKIKTANVVVATPGRLVDLINDG 290 Query: 333 GLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV 392 + + +++ + + M ++ QT+ Sbjct: 291 AINLGKVNYLVLDEADRMLEKGFE----------------EDIKTIISNTSNSERQTLMF 334 Query: 393 SATPGNYELEKSGGDVVDQVVRPTGLLD---------PIIEVRPVATQVDDLLSEIRQR- 442 +AT E + + V G D ++EV + L+ +R+ Sbjct: 335 TATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYN 394 Query: 443 --AAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL 500 + + ++L+ L K+ A + +L+ + V +H D+ +R + + G+ ++L Sbjct: 395 ANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLL 454 Query: 501 VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITP 559 + ++ GLD+P V +V F + + IGR R G A + Sbjct: 455 LATDVAARGLDIPNVKVVIN-----LTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEK 509 Query: 560 SMAKAIGETERRREKQQKYNEEHGITPQGLNKKVV 594 ++ A+ R Q EE KK Sbjct: 510 HLSGALCNIL--RGANQPVPEELLKFGGHTKKKAH 542 >UniRef50_O97031 DjVLGA n=1 Tax=Dugesia japonica RepID=O97031_DUGJA Length = 726 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 25/256 (9%) Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D L + + ++ + + M + + +P Sbjct: 348 TPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQTNMPPPGQR------ 401 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVVDQVVR---PTGLLDPIIEVRPV---ATQVDD 434 QT+ SAT + + D + G I R V + D Sbjct: 402 -------QTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENEKRD 454 Query: 435 LLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRL 494 L +I + +LV TKR A+ L +L G V +H D +R ++ R Sbjct: 455 HLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFRE 514 Query: 495 GEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILY 553 G +LV + GLD+P V V D + + IGR R N G+AI + Sbjct: 515 GSTPILVATRVAARGLDIPNVKFVINYDLPTD-----IEEYVHRIGRTGRVGNLGEAISF 569 Query: 554 GDKITPSMAKAIGETE 569 ++AK + + Sbjct: 570 YTDKNNNVAKELVDIL 585 >UniRef50_B5IG60 DEAD/DEAH box helicase domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IG60_9EURY Length = 451 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 96/272 (35%), Gaps = 11/272 (4%) Query: 331 ADGLLVVDESHVTIP-QIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQT 389 +V+ + G + R L E L + + Q Sbjct: 117 KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQM 176 Query: 390 IYVSATPGNYELEKSGGDVVDQVVR----PTGLLDPIIEVRPVATQVDDLLSEIRQRAAI 445 + SAT + + + + + + + +++ + + Sbjct: 177 MLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISE 236 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + L+ T+R +++ E L+++G + LH D+ R + + G+ D+LV ++ Sbjct: 237 RGKYLIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDV 296 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKA 564 G+D+ ++ V D + + IGR R + +GKAI + + + Sbjct: 297 AARGIDVHGITHVVNYDVPLY-----PKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRR 351 Query: 565 IGETERRREKQQKYNEEHGITPQGLNKKVVDI 596 I + +R + + I + K++ DI Sbjct: 352 IEDFIGKRIPKMEIKNVGKIKERIDYKEISDI 383 >UniRef50_D2VEC4 DEAD/DEAH box helicase n=1 Tax=Naegleria gruberi RepID=D2VEC4_NAEGR Length = 535 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 116/346 (33%), Gaps = 32/346 (9%) Query: 251 TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE-----LGYCSG 305 + I + + V+L + L +Q + +F + + G SG Sbjct: 168 LLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSG 227 Query: 306 IENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYG 365 + P + D++ + L + ++ + + M + + G Sbjct: 228 YQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEG 287 Query: 366 FRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD----- 420 +P D T+ SAT + + + D++ G++ Sbjct: 288 SGMPPKGDRL-------------TLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDN 334 Query: 421 --PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHS 478 + D L+ + ++ E+ LV K + + E L G + +H Sbjct: 335 ITQSFYQVDRRGKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHG 394 Query: 479 DIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQT 538 D D R +R + G ++LV ++ GLD+ +V+ V D KE S I Sbjct: 395 DKDQRSRERSLRQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKE-----IDSYIHR 449 Query: 539 IGRAARNVN-GKAILYGDKITPSMA-KAIGETERRREKQQKYNEEH 582 IGR R N G A + D + + + + ++ E+ Sbjct: 450 IGRTGRVGNLGIATAFFDPSEDGKLCRELVKILKDANQEIPEFIEN 495 >UniRef50_A1XCP2 Vasa-like protein n=4 Tax=Coelomata RepID=A1XCP2_MACRS Length = 710 Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 62/371 (16%), Positives = 127/371 (34%), Gaps = 36/371 (9%) Query: 266 ELAARRKVLLENNKLLEEQRLTQRTQFDL-----EMMNELGYCSGIENYSRFLSGRGPGE 320 EL +++ + L Q + +F ++ G +G + Sbjct: 352 ELQEPEAIIVAPTRELINQIFLEARKFAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCG 411 Query: 321 PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFE 380 P L D + + + ++ + + M + +P + Sbjct: 412 TPGRLLDVIQRGWIGLTKLRYLVLDEADRMLDMGFEPDMRRLVASPGMPPKENR------ 465 Query: 381 EFEALAPQTIYVSATPGNYELEKSGGDVV-DQVVRPTGLL-------DPIIEVRPVATQV 432 QT+ SAT + + + D + G++ + ++ Sbjct: 466 -------QTLLFSATYPQDIQKLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKYSKR 518 Query: 433 DDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDL 492 + LL + + NER +V TKR A+ + +L + +H D + ER + + D Sbjct: 519 EQLLDFL--KTIGNERTMVFVETKRQADFIATFLCQEELPTTSIHGDREQREREQALADF 576 Query: 493 RLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAI 551 + G+ +LV ++ GLD+PEV V D ++ + IGR R N G+A+ Sbjct: 577 KAGKCPILVATSVAARGLDIPEVQHVVNFDLP-----KNIDEYVHRIGRTGRCGNIGRAV 631 Query: 552 LYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQ--NIAKTKAK 609 + D S A T + +Q+ + G + K++ Sbjct: 632 SFYDPEVDSQLAASLVTILSKAQQEVPSWLEESAFSGGATSFSQANKSFASSDSRKSQQA 691 Query: 610 GRGKSRPIVEP 620 G + +P+ + Sbjct: 692 GCERRQPVPQI 702 >UniRef50_A4RK80 Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 n=1 Tax=Magnaporthe grisea RepID=PRP28_MAGGR Length = 674 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 110/350 (31%), Gaps = 24/350 (6%) Query: 240 RFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNE 299 + P Y+ P + + + + A E ++ + + T+ ++ Sbjct: 309 AAFVLPMLSYIEPLPPLNEV-TKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCL 367 Query: 300 LGYCSGIENYSRFLSGRGPGE--PPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRAR 357 +G IE + L P L D L L++ S+V + + M G Sbjct: 368 IGNKRTIEEDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFED 427 Query: 358 KETLVEYGFRL--------PSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVV 409 + + N KF QT+ SAT + + Sbjct: 428 SIHKILAALPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLK 487 Query: 410 DQVVRPTGLLDPIIEVRP-------VATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDL 462 + G + ++ + + L + + V+V TK + + Sbjct: 488 HPAMVTIGTIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAV 547 Query: 463 TEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILD 522 + L+ LH + +R ++ R G +VLV ++ GLD+P+VSLV Sbjct: 548 AKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVIN-- 605 Query: 523 ADKEGFLRSERSLIQTIGRAAR-NVNGKAILYGDKITPSMAKAIGETERR 571 + IGR R G AI + + + + + Sbjct: 606 ---FNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSK 652 >UniRef50_C4Q0V4 DEAD box ATP-dependent RNA helicase, putative n=1 Tax=Schistosoma mansoni RepID=C4Q0V4_SCHMA Length = 769 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 37/312 (11%) Query: 278 NKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGE----PPPTLFDYLPADG 333 +L ++ + + D + + + G ++ + GE P L D++ Sbjct: 175 RELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQR 234 Query: 334 LLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVS 393 L+ +++ + + M + + R QT+ S Sbjct: 235 NLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRP-----------------DRQTLMWS 277 Query: 394 ATPGNYELEKSGGDVVDQVVRPTGLLD--------PIIEVRPVATQVDDLLSEIRQRAAI 445 AT + + D + G + I+E+ ++ L+ + Sbjct: 278 ATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELLTSFG-- 335 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 R LV TKR + LT L G V +H +R + + + G ++LV ++ Sbjct: 336 RARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDV 395 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+ + V D F I IGR AR+ G A + A+ Sbjct: 396 ASRGLDIDNIEYVVNFD-----FPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARD 450 Query: 565 IGETERRREKQQ 576 + + ++ Sbjct: 451 LIDILDEANQEI 462 >UniRef50_Q1AG34 Ded1-like DEAD-box RNA helicase n=3 Tax=Coelomata RepID=Q1AG34_CHITE Length = 776 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 105/318 (33%), Gaps = 32/318 (10%) Query: 279 KLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVD 338 ++ EE + + G + + P L D + + + + Sbjct: 365 QIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLEN 424 Query: 339 ESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGN 398 + + + M + + +P QT+ SAT Sbjct: 425 LRFLVLDEADRMLDMGFEPQIRHIIENRDMPPTGQR-------------QTLMFSATFPK 471 Query: 399 YELEKSGGDVVDQVVRPTGLLDPI----------IEVRPVATQVDDLLSEIRQ---RAAI 445 E + + + + G + + + + DLLS +R+ + Sbjct: 472 NIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNENEKRSYLLDLLSRLREGSPDYSP 531 Query: 446 NERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINL 505 + L+ TK+ A+ L E+L ++ V +H D ER + ++ R G+ +LV + Sbjct: 532 DSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRSGDCPILVATAV 591 Query: 506 LREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKAILYGDKITPSMAKA 564 GLD+P V V D + + IGR R N G A + ++ ++ Sbjct: 592 AARGLDIPHVKHVINYDLPSD-----VEEYVHRIGRTGRMGNLGIATSFFNEKNRNIVSD 646 Query: 565 IGETERRREKQQKYNEEH 582 + E ++ E Sbjct: 647 LVELLIETNQELPSFLEE 664 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.123 0.301 Lambda K H 0.267 0.0378 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,992,162,236 Number of Sequences: 3077464 Number of extensions: 117374831 Number of successful extensions: 503999 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7586 Number of HSP's successfully gapped in prelim test: 6891 Number of HSP's that attempted gapping in prelim test: 473832 Number of HSP's gapped (non-prelim): 23231 length of query: 673 length of database: 1,040,396,356 effective HSP length: 136 effective length of query: 537 effective length of database: 621,861,252 effective search space: 333939492324 effective search space used: 333939492324 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 96 (41.7 bits)