BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (90 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 149 2e-35 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 141 6e-33 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 120 1e-26 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 115 5e-25 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 110 1e-23 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 110 2e-23 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 109 2e-23 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 106 2e-22 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 106 2e-22 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 105 3e-22 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 102 4e-21 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 101 6e-21 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 100 1e-20 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 100 2e-20 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 99 3e-20 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 99 3e-20 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 97 1e-19 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 96 4e-19 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 96 5e-19 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 95 6e-19 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 95 8e-19 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 94 1e-18 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 94 1e-18 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 94 2e-18 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 93 2e-18 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 93 2e-18 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 93 2e-18 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 93 3e-18 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 93 3e-18 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 92 4e-18 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 91 8e-18 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 91 9e-18 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 91 1e-17 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 90 2e-17 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 90 2e-17 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 90 2e-17 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 90 3e-17 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 88 7e-17 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 88 1e-16 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 87 2e-16 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 87 2e-16 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 86 3e-16 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 86 4e-16 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 86 5e-16 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 85 6e-16 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 84 2e-15 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 82 6e-15 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 82 8e-15 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 81 1e-14 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 81 1e-14 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 80 2e-14 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 80 2e-14 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 80 3e-14 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 80 3e-14 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 79 3e-14 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 79 5e-14 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 79 5e-14 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 79 7e-14 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 78 7e-14 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 78 8e-14 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 77 1e-13 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 77 2e-13 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 77 2e-13 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 77 2e-13 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 77 2e-13 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 76 3e-13 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 76 3e-13 UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius... 76 4e-13 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 75 5e-13 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 75 8e-13 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 74 1e-12 UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri... 74 1e-12 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 74 2e-12 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 74 2e-12 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 74 2e-12 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 74 2e-12 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 73 2e-12 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 73 2e-12 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 73 3e-12 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 72 4e-12 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 72 4e-12 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 72 4e-12 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 72 5e-12 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 71 1e-11 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 71 1e-11 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 71 1e-11 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 70 1e-11 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 70 1e-11 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 70 2e-11 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 70 2e-11 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 70 2e-11 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 70 3e-11 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 70 3e-11 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 70 3e-11 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 70 3e-11 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 69 3e-11 UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringi... 69 5e-11 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 69 5e-11 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 69 6e-11 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 69 7e-11 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 68 7e-11 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 68 9e-11 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 68 9e-11 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 68 9e-11 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 68 9e-11 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 68 1e-10 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 67 1e-10 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 67 1e-10 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 67 1e-10 UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus... 67 2e-10 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 67 2e-10 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 67 2e-10 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 67 2e-10 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 67 2e-10 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 67 2e-10 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 67 2e-10 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 67 3e-10 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 66 3e-10 UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA6... 66 3e-10 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 66 3e-10 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 66 3e-10 UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep... 66 3e-10 UniRef50_C4K5I4 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 66 3e-10 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 66 3e-10 UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M... 66 4e-10 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 66 4e-10 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 66 4e-10 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 65 5e-10 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 65 5e-10 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 65 7e-10 UniRef50_B1ZRV0 Histone family protein DNA-binding protein n=2 T... 65 7e-10 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 65 7e-10 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 65 9e-10 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 64 1e-09 UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C... 64 1e-09 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 64 1e-09 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 64 1e-09 UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ... 64 2e-09 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 64 2e-09 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 64 2e-09 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 64 2e-09 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 63 3e-09 UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewane... 63 3e-09 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 63 3e-09 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 63 3e-09 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 63 3e-09 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 63 3e-09 UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=... 63 3e-09 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 63 3e-09 UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen... 63 4e-09 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 63 4e-09 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 62 4e-09 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 62 4e-09 UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=V... 62 5e-09 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 62 5e-09 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 62 6e-09 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 62 6e-09 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 62 7e-09 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 62 8e-09 UniRef50_Q3M1G4 Histone-like DNA-binding protein n=1 Tax=Anabaen... 62 8e-09 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 62 8e-09 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 61 9e-09 UniRef50_Q3EPN6 DNA-binding protein HU n=1 Tax=Bacillus thuringi... 61 1e-08 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 61 1e-08 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 61 1e-08 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 61 1e-08 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 61 1e-08 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 60 1e-08 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 60 1e-08 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 60 1e-08 UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi... 60 2e-08 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 60 2e-08 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 60 2e-08 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 60 2e-08 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 60 2e-08 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 60 2e-08 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 60 3e-08 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 60 3e-08 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 60 3e-08 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 59 3e-08 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 59 3e-08 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 59 4e-08 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 59 4e-08 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 59 4e-08 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 59 5e-08 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 59 5e-08 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 59 5e-08 UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=P... 59 5e-08 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 59 6e-08 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 59 6e-08 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 59 7e-08 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 58 7e-08 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 58 7e-08 UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 T... 58 8e-08 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 58 8e-08 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 58 8e-08 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 58 9e-08 UniRef50_B5JL43 DNA-binding protein HU n=1 Tax=Verrucomicrobiae ... 58 1e-07 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 58 1e-07 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 58 1e-07 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 57 1e-07 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 57 1e-07 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 57 1e-07 UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteri... 57 1e-07 UniRef50_Q02AB3 Histone family protein DNA-binding protein n=3 T... 57 1e-07 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 57 1e-07 UniRef50_Q9PQK9 DNA-binding protein HU n=15 Tax=Ureaplasma RepID... 57 2e-07 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 57 2e-07 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 57 2e-07 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 57 2e-07 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 57 2e-07 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 56 3e-07 UniRef50_P04445 Transcription factor 1 n=2 Tax=Bacillus phage SP... 56 3e-07 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 56 3e-07 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 56 3e-07 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 56 4e-07 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 56 4e-07 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 56 5e-07 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 55 5e-07 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 55 5e-07 UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobac... 55 6e-07 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 55 6e-07 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 55 7e-07 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 55 8e-07 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 55 8e-07 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 55 9e-07 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 55 9e-07 UniRef50_UPI0001699D1F integration host factor, beta subunit n=1... 55 9e-07 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 54 1e-06 UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema... 54 1e-06 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 54 1e-06 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 54 1e-06 UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula berm... 54 1e-06 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 54 2e-06 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 54 2e-06 UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabac... 54 2e-06 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 54 2e-06 UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 54 2e-06 UniRef50_C7LVH5 Histone family protein DNA-binding protein n=1 T... 54 2e-06 UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Ha... 53 2e-06 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 53 2e-06 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 53 3e-06 UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6... 53 3e-06 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 53 3e-06 UniRef50_Q2NJP6 DNA-binding protein HU n=12 Tax=Candidatus Phyto... 53 3e-06 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 53 4e-06 UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Ac... 52 5e-06 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 52 5e-06 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 52 6e-06 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 52 6e-06 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 73/90 (81%), Positives = 80/90 (88%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+D IA KA+LSK QAK ALE + IT+SLKEGDAVQLVGFGTFKVNHRA RTG Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI+IAAANVP+FV+GKALKDAVK Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 71/90 (78%), Positives = 78/90 (86%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LID IA AEL+K QAKAALE+TL AIT SLKEG+ VQL+GFGTFKVN RA RTG Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG EI+IAA+ VPAFVSGKALKDA+K Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/90 (61%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI++I++K+ LSK Q K LE TL AI +SLK+G++VQLVGFGTFKVN+RA R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I I+A P F+SGK K A+K Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 57/90 (63%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LID +A A LSK +A A+++ + ITE+LKEGD+V LVGFGTF+V RAER G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA+N P+F GKALKDAVK Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVK 90 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/89 (60%), Positives = 69/89 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI+ IA A+++K +A AL+ L+AI ++L + D+V LVGFGTFKV RA RTG Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG EIKI AA VP F +GKALKDAV Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/90 (58%), Positives = 70/90 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+A+L+K +A +A+++ +I SL +G+ VQL+GFG F+V RA R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI I A+ VPAF +GKALKDAVK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 52/89 (58%), Positives = 67/89 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ +AE +ELSK A A++S I ++LK GD +QL+GFG F+V R+ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A+ VPAF GKALKDAV Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+AELSK A A+++ +IT +LKEG VQLVGFG+F+V R+ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A PAF GK LKDAV Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 52/89 (58%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL+ + A+TE+LK+GD V LVGFG+F V RAER G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI I +A P F GKALKDA+ Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/90 (56%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AE+ ++SK A + + I ESL +GD+VQL+GFG F+V RA R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI IAA PAF +GK LKDAVK Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL++ + ++T +LK GD+V LVGFGTF V R R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK ++IAAA P F +GKALK+AV Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 50/89 (56%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK L+K A+ AL + L +I E+L GD VQLVGFGTF+ RA R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI IAA VP F +GK L+++V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +AE EL+K + AA+++ ++I L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG EIKIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/89 (58%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A LSK A AL +T AIT ++ D VQL GFG+F V +RA RTG Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I A+ V AF +GKALK+AV Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/90 (56%), Positives = 62/90 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLID IAE A ++K +A L L ITESLK+ ++VQLVGFGTF V HR R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I++ A VP+ KALKDA+K Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALK 90 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 49/89 (55%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ +AE + LSK A +++T AAIT +LK GD V+LVGFG+F V RA + G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG IKIAA+ P F +GK LKDAV Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAV 115 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/90 (54%), Positives = 61/90 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AEK +SK + ++E I+E+LK G+ V + GFGTF+V RA R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI I A PAF KALKDAVK Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 47/89 (52%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A A +SK+ A +++ L AIT+++ +AVQL+GFG F R+ RTG Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI IAAAN F +GKA KDAV Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 48/89 (53%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+ +A+K+EL+K A+AAL S IT+SL EGD VQ+ GFGTF +++ RTG Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I AN F + KALKD + Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 48/89 (53%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI IA++AELSK A + + ++ +T+ LK+G+ V LVGFGTF AER G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + IAA P F SGKALKDAV Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 49/89 (55%), Positives = 67/89 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK++LI+ IAEKA++SK A ALE+ + + +LK+GD+V LVGFGTF V RA R+G Sbjct: 27 VNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSG 86 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG IKI ++ VP F GKALKD++ Sbjct: 87 RNPRTGAVIKIKSSKVPKFRPGKALKDSL 115 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +A EL+K + AA+++ AA+TE L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTGKE KIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/89 (55%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L IAEKA+L+K QA L + L IT +L D+V LVGFGTF HR RTG Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GKAL+DAV Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAV 89 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A+ A+ + +I ++L EGD VQ++GFGTF+V R+ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A+ PAF +GKALKDAV Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAV 89 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK +LI IA+ AE+SK +A+ AL S + I +++ +GD+VQL+GFGTF + RA R G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +KIAAA F +GKA KD+V Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSV 101 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/89 (48%), Positives = 61/89 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + ++ +A++ ++S+ QA AL + L I E + G+ V GFG+F+V+ RAERTG Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG IKIAA+ VP F +G LK A+ Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAI 89 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/90 (50%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+D IA + L+K A LE+ +A +T+ LK+GD V + GFG+F +R+ RTG Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGK I+I A+ V F +GK LK+AV+ Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQ 98 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI +AEK++L+K A+ AL++ + ++ E+L+ G+ VQLVGFGTF+ RAER G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +EI I A+ P F +GK LK+ V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ L+ VI++ + L+K + AL++ AIT +L GD V + GFG+F V RA RTG Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I+I A+ VPAF +GK LK++V Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESV 89 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/89 (51%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +LID IA + +LSK LE L I +++K+GD VQLVGFGTFK RA RTG Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TG+ +KI A VP FV+G K V Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K+ A +A+++ + LK ++L GFG+F V+HRA G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAV 89 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ +++ + LSK +A L+ LA I +SLK+G+ V LVGFGTF+ + RTG Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ ++I A VP F +GK+L++A+ Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A + SK Q L++ L I +++ +GD+VQL+GFG+F RA RTG Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ IKI AA F +GKA KDAV Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAV 89 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 66/90 (73%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ IA+K+ELSK +++ AL + + + E+L +G+ VQLVGFGTF+ R R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ +E I+I A+N P F +GK+LK+AV Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/89 (49%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK++L+K A+ AL++ + ++ E+L++G+ VQLVGFGTF+ RA R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I I A VP F +GK KD V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I E+L + + VQ++ FGTFKV HR ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK A V F +GK+LKD+V Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L VIAEKA+L+K +A L + L +IT +L + D V LVGFGTF+ HR RTG Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGAL-DKDTVTLVGFGTFEKRHRGARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GK LKD+V Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSV 88 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 46/89 (51%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ + K K A+ + L +TE+LK+G++V L+GFGTFKV R+ RTG Sbjct: 1 MNKGDLVEAVT-KVVGKKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK IKI A VP F +GK LK+AV Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/87 (52%), Positives = 58/87 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L+ IAE AEL+K QA+ L+ +A+ T +LK GD V ++GFG F R RTG Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNPQTGK ++IA F GKALKD Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKD 87 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 58/90 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK L+ +A A LSK A A++ AIT +LK GD V+LVGFGTF V RA G Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I A+ P F +GK LKD ++ Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I +SL + + VQ++ F TFKV+HR+ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+P+TG++IK A VP F +GK LK +V Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ +AEK+EL+K A+ AL S + ++ E+L +GD VQLVGFGTF+V R R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ ++ I+I A+ P F +GK LK+ + Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/91 (49%), Positives = 63/91 (69%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +L++ I KA L +K QA++AL++T+A + +++ G++V GFG+FKV RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+EI I A V F GK LKDAVK Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M KT+LID IA + L+K +A+ AL TL+AI +++ +GD + L+GFGTF R ER Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ KDAV Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL++V+A+ + SK A+ A+ L +I E+LK+G VQLVGFG F V R R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN +TG+E+++ A VP F +G LK A+ Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKAL 111 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A +A+++ + LK G ++L GFG+F V+ R G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F +GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAV 89 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 59/85 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ +AEKAE+++ A L++ + +I ++L GD VQ++GFG+F+V R ER Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 +P TGKEI + A VPAF GK+L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+V+A++ LSK +A L + L + ++K+G AV L GFG+FK + RA R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG +IKIAA +P F G A K AV Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +LI+ IA + L+K +A+ AL TL AI +++ +GDA+ LVGFGTF RAER Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ ++AV Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAV 111 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 55/90 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L+D +A+ L K KA +++ LA + E+L G VQL GFGTF+V R RTG Sbjct: 6 VTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 P T ++IKI A PAF GKALKD VK Sbjct: 66 VKPGTKEKIKIPATQYPAFKPGKALKDKVK 95 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M ++ LI IAEK + +++ +AK + TL +I ++L GD VQ VGFG+F+V RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQ G EI I + F +GK LKD V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI I+ + LSKT ++ AL + ++ +TE L +GD++ L GF + V RTG Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ I+IAA+ V +F +G LK+A+ Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 40/89 (44%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN +L ++A+K +S+ A A+ +TL AI+ESL + V L+GFGTF V RA R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG++I I+A+ F +G++L++ V Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKV 89 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDA-VQLVGFGTFKVNHRAERT 59 MNK++LID +A A ++K AKAALES ++ +T +L + D V LVGFGTF V RA R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 G NP T K IKIAA V F +G L +V Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QL+D IA++ E ++ A A+++ AI E++ G+ V + GFG F+ RA RTG Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ + +AA+ VP F G K +V Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 42/87 (48%), Positives = 58/87 (66%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +L+ IAEKA ++K QAK ALE+ + A+T+SLK G V+LVGFGTFK RA T RN Sbjct: 4 KAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTARN 63 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P+TG+ + A+ F G+ LK ++ Sbjct: 64 PRTGETVNRPASKTARFQVGEGLKSSL 90 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 57/90 (63%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ + KA LS+ A+ A+ + IT L E V LVGFG+F V RA R+G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 R+PQ+G+ I I A + P F KALK+ V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQ 90 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LID IA + L+K +A+ AL TL+AI +++ GDA+ LVGFG+F R ER Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG++I + AA F G+ KDA Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDA 89 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 6/95 (6%) Query: 1 MNKTQLIDVIAEKAE------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 MNK +L+ + +KA+ ++K + A + + + I E + EG+ V LVGFG+F+ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R ER GRNP+TG ++ I A VPAF +GK KD V Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVI-AEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K++LID + A+ L+K ++ + IT+ + +G AV +VGFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP TG IKIAA P F +GKA KD+V Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ LID IAE E SK L+S + + + +G AV+L GFGTF+ A RTG Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG IKI + + P F G KD VK Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVK 90 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+KT+LI +AEK LSK Q + + L+ I + L G V+LVGFGTF +RA R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ + I +V F G LK V+ Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI+ ++ E+++ +++ +E+ +I SL+ GD +++ GFG+F+ R R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG +++ A +P F K LKD V Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVV 89 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K I ++A+ A L+K A A ++ ++ IT+ L +GD++ +GFGTF RA R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R P TGK IK+ A V F GK LK+AV Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 7/82 (8%) Query: 16 LSKTQAKAALESTLAAITESLKEGDAVQL-------VGFGTFKVNHRAERTGRNPQTGKE 68 LS+ AK ALE+ + A T++LK+GD + L GFGTF ++ R+ RTGRNPQTGKE Sbjct: 125 LSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGKE 184 Query: 69 IKIAAANVPAFVSGKALKDAVK 90 I+IAA NV F +G L AVK Sbjct: 185 IQIAAKNVVKFKAGAELSKAVK 206 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 49/65 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A ++ LSK+ AK AL++ A T++L++GD+ LVGFG+F ++ R+ RTG Sbjct: 1 MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60 Query: 61 RNPQT 65 RNP + Sbjct: 61 RNPSS 65 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/90 (46%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + KT+L++ + E A+L ++ A AA+ + +A I+ +L +G VQLVGFGTF+V R+ RTG Sbjct: 21 VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80 Query: 61 RNPQ-TGKEIKIAAANVPAFVSGKALKDAV 89 RNPQ K + I A VP F +GK L+ AV Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NKT LID +A++ +K L +TL AI+ +++ GD V L FGTF R R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP TG +KI AAN P+F + KD VK Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVK 112 >UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius RepID=Q2NQ11_SODGM Length = 78 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 54/77 (70%), Gaps = 1/77 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ LI+ + EK+++++ +A + + +AAITE+L G++V L GFG F V RAER+G Sbjct: 1 MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60 Query: 61 RNPQTGKEIKIAAANVP 77 RNPQTG + + N+P Sbjct: 61 RNPQTGG-VAVTRFNIP 76 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LID IA+ L+K + +A +E + A+ ++KEG ++L FG F+V HRA RTG Sbjct: 3 MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + ++I P F L +AV Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT L+ + EL++ QA +E+ + +T +L G+ VQL G G+F V HR TG Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG+ ++IAA N F +GK L+D + Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRDPFQ 90 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QLI IA + SKT + + S L I +++ G+ V LVGFG+F+ R R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++ + A+ +P F G ++ V Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKV 89 >UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria RepID=Q3SRD9_NITWN Length = 99 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/85 (45%), Positives = 54/85 (63%) Query: 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 L +AE ELSK A+A L + IT+ LK+GD +++VG G +V RA R GRNP Sbjct: 15 HLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPA 74 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG+EI+I A+ AF + K LK+A+ Sbjct: 75 TGEEIQIKASKKVAFRAAKELKEAI 99 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 53/85 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +A+KA+L++ KA E+ + I E +K+G+ + LVGFG+F V+ RA R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP++GK I I A+ F AL Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ IA K L+ + A++ L ++E+L G +++ GFG+F ++HR R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A VP F GK L++ V Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERV 90 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLID-VIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ ++ + LS + A+++ L +++ L GD +++ GFG+F +++RA R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L+D V Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +A +++LS + ++A++ L + +L+ GD +++ GFG+F +++RA RT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG +++ VP F GK L++ V Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + + ++AEKA LSK + +++ L IT++LK GD V +GFGTF RA R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 + P T + +K+ A V F GK LK+AV Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 51/77 (66%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KT+LI+ +AE+ ++K+Q + E L+ I SL++G+ V + GFGTFKV R+ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 63 PQTGKEIKIAAANVPAF 79 P+TG+EI+I F Sbjct: 64 PRTGEEIEIPGGKRVTF 80 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 9/98 (9%) Query: 1 MNKTQLIDVIAEKAE---------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + + L+K +A+ AL L ++ ++K + + GFG+F+ Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 ++HR R GRNP+TG ++KI A N P F +G+ +K+A Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEAC 98 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN LID IA+ + +K A + + + I+ +LK G+ V++ G G F V+ RA R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+IAA F +GKALKDAV Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAV 89 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 50/85 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +AEKA L+K A+ A+ + +TE + G+ + L+GFGTF V+ RA R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP+T K I I A V F G L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +I+ + EK SK ++ +E + E+L+ GD +++ GFG F+V + R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGKEI+I+A V F + LK A+ Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSAL 89 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 54/87 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLI ++ LSK A+ ++ I ++LK D V++ GFGT+KV R R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG++I+I A+ F+ KALK+ Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ + EK +S + A++ L ++++L+ GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++K+ A VP F +GK L++ V Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 53/87 (60%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K L++ I+ L+K + +A ++ +I +SLK G +++ GFG+F + ++ ER RN Sbjct: 7 KADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLARN 66 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P+TG+++ + A NVP F K K AV Sbjct: 67 PRTGEKVSVEAKNVPTFKISKEFKHAV 93 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI V+ ++A+L+KT+A +E ++TE+L + V++ G +F + TG Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++ I A +P F GK LK+ V Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I EK SK ++ +E I E+L+ G+ +++ GFG F V +A+R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG EI I+A + F + LK ++ Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L IA +S+ +AK LE LA+I ++L+EG+ + L FGTF++ + R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++A N P+F ALK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+++A K + L+ + ++++ L ++++L GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L++ V Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERV 90 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK+ L+ +AEK +S+ + L+ + I +++ GD++ L GFG+FK HR RTG Sbjct: 4 LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGK 83 RNP+TG+ + I A+ F + Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSR 86 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ LI+ +A + + +AA++ L + +L+ GD +++ GFG+F +++RA R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++++ VP F GK L++ V Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERV 90 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 56/90 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +L +++ E+ L+K +AK +++ I E+L GD+V+L GFG F+V + R G Sbjct: 12 LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA V F + + LK V+ Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSTVE 101 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 52/86 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +A K +LS +A AL+ + ITE++++G+ + LVGFG+F + R ER G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 NP TG + I A F G ++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ L IA+++ S Q L++ +T+++ GD VQ++GFGTF + R R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+EI++ A F +G L+ AV Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAV 89 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 54/88 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+ + IA ++K +A+ + S + + ++ G +VQLVGFG F+V H+ R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP G+ I+I A NV F G+ LK+A Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNA 88 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 34/72 (47%), Positives = 49/72 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ A +A LS+ Q AALE+ L I ++ D V + GFG+F++ H+ RTG Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 61 RNPQTGKEIKIA 72 RNPQTG+ ++IA Sbjct: 72 RNPQTGEPLEIA 83 >UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT70_BACTU Length = 94 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L++ + E+ LSK++ + A+++ + I E+L+ G+ V L GFG F R R Sbjct: 1 MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R P + KE+++ A +PAF G+ K+ V Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L+ +I+E + + +++ L AI +S+ +G+ +++ GFGTFK+ R R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +++ + A VP F + K+AV Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 47/79 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT + IAEK + A+ + + ITESL G+AV+L GFGTF + H ER Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNP+TG+ +++ A + P F Sbjct: 61 RNPKTGETVQVPATHYPTF 79 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+D +A K L + A+ A+++ L IT +L+ G+ V + FGTF V HR R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP G + I VP F +GK ++D Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRD 88 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID +AEK L+ +A+ + L ++++L EG +++ GFG+ V G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI++ +P F GK L++ + Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ IAE L + + + + L I +L GD V+L GFG F V HR R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG+ + + +VP F +GK +++ Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRE 88 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 3/90 (3%) Query: 1 MNKTQLIDVIAEKAELS-KTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MNK +++D + +A L + QA +A+E+ + I ++ +GD V + GFGTF+ R RT Sbjct: 1 MNKAEMVDAL--EARLGGRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNART 58 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ +KI +VP F G A K+ V Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT LI +++ ++LSK AK A+E L +T+ + G +++ GFG F HR R G Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+T + ++ VP F GK LK+ V Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIV 98 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A+ ++ L A+ +SL G+ +++ GFG+F +N+R R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK +++ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +++K + L+K Q + ++ + E+L G+ +++ GF FKV R ER Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK+ F KALK+A+ Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEAL 90 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 55/90 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + + + ++ L+K +AK +E I +L++G+AV+L GFG F++ + ER G Sbjct: 3 LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+EI I A V F G+ LK V+ Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A A+++ L A++++L G +++ GFG+F +N R R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G ++ + VP F GK L++ V Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV 90 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A+K L K +AK L++ + +TE + E + + LVGFGT + +R Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG + I A F GK L +A+ Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAM 89 >UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis RepID=Q02ZW9_LACLS Length = 120 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +LID +A++ ELSK A A+ + + AIT + EG V + FGTF+V A R + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 + ++I + N+P F +GKALK Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 48/85 (56%) Query: 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 ++ D IA + L K QAK +ES ITE+ G + FG FK+ ER GRNP Sbjct: 6 EIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGRNPA 65 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG IKIAA+ F GKA+KDA+ Sbjct: 66 TGATIKIAASKKLTFTPGKAVKDAL 90 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MN++ LI +AE+ L + + L + ++ +G+ V++ GFG+F +N+R R Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG +I++AA P F GKALK+ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ +K + QA AA+E+ + I ++ +GD+V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +K+ +VPAF G K V Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVV 89 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A + +L+ A+++ L A+T++L G +++ GFG+F ++ R+ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK L++ V Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 7/96 (7%) Query: 1 MNKTQLIDVIAEKA-------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVN 53 +NK +L I+EK+ L+ ++K +++ A+ITE L + +Q++ FGTF+ Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 54 HRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RA R G NPQ G+ I+I VP F +GK LK+AV Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + I +AE+ +SK +A+ +++ L ++E L+ G+ V L GFGTF+V R R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+T + + I A P F + +LK V+ Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVR 90 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A + +L A A+++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++++ +VP F GK L++ V Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV 90 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEK--AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MNK++L+D + E+ SK + A+ L I E L + D V + GFG+F+ A R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP G+ ++I A F GKALK+AVK Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA69_9CHLO Length = 118 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +D++A +A +SK QA+ AL+S LA I ++ G+ V GFG+F+ RA RTG N Sbjct: 29 KAWAVDLMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVN 88 Query: 63 PQTG-KEIKIAAANVPAFVSGKALKDAV 89 PQ ++IKI A+ P F +G A K AV Sbjct: 89 PQNPTQKIKIPASMAPKFKAGSAFKSAV 116 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A E L + + + I+ +L++GD V+L GFGTF V +R RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG+ +++ VP F +GK +++ Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRE 88 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 53/86 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ K + QA AA+E+ + I ++ +GD+V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 RNP+TG+ +K+ +VPAF G K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR Length = 106 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K + +++ KAEL +K +A+ ++ L + E L +GD+V +GFG F+ RAERT Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKAL 85 NPQT K +KIAA V F GK L Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNL 86 >UniRef50_C4K5I4 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K5I4_HAMD5 Length = 75 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 44/64 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI +A AE+SK +A+A + S + ++TE LK G AV L GFGTF+V RA RTG Sbjct: 1 MKKNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTG 60 Query: 61 RNPQ 64 R P+ Sbjct: 61 RTPK 64 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K QLI IAE + KT A++ALE + + L++G + L G KV R RTG Sbjct: 3 LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I+IAA V FV K L D++ Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSI 91 >UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum RepID=Q2WAF5_MAGSA Length = 89 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K+ + I + A + QA AA+E+ LA I E +K L+GFG+F + R R G Sbjct: 1 MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TGK I IAA+ F + ALK ++ Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI + ++ LSK+QA +E L+ +SL+EG+ + L GFG F V + R G Sbjct: 3 LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+E+ +A V F L+ V Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRV 91 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + +K LS+T++ A +E L IT+ L++G+ V+L FG+F V + +R G Sbjct: 8 VTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E+ I+ V F LK + Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +IA + L + + + IT +L EG+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG+ + + VP F +GK L+D Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRD 88 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + +K LS+T++ A +E L IT+ L+ G+ V+L FG+F V + +R G Sbjct: 8 VTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E+ I+ V F LK + Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI + EK L A + S +I ++L GD V++ GFG+F V TG Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++++ +P F +G+ K+ + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYL 89 >UniRef50_B1ZRV0 Histone family protein DNA-binding protein n=2 Tax=Verrucomicrobia RepID=B1ZRV0_OPITP Length = 91 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 1 MNKTQLIDVIAE--KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MNK +L+D + + AE S A+ A+++ LAA+T L VQLVGFG F V RA R Sbjct: 1 MNKAELVDEVRKLLGAETSTAAAERAVDAVLAAVTRGLHRDKEVQLVGFGAFAVATRAAR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALK 86 G NP T + +KI A F +G+AL+ Sbjct: 61 RGFNPHTQQPMKIRAMKTIRFKAGQALR 88 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDA-VQLVGFGTFKVNHRAERT 59 MN+++L+ +A++AE+++ A A L + + + + +GD V + GF TF+ HRA RT Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I+I A +G LK+A K Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEAAK 91 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++ + + E L+K AK +ES I E+L+ G+ V+L GFG F + + +R G Sbjct: 3 LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I+A V F G+ LK V+ Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 47/71 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K + +D A+ +K +A+ + L + ESL +GD+VQ VG+GTF+V RA RTG Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 61 RNPQTGKEIKI 71 NPQT +EI+I Sbjct: 61 INPQTKEEIQI 71 >UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0E2_PHYMT Length = 96 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 52/88 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + I +++K E ++ + K + + + I +L + + + + GFGTF V R+ER G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 ++P+T + IKI A +P+F K KD Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKDV 88 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L++ +A + +L A ++++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+ + + VP F +GK L++ V Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGD---AVQLVGFGTFKVNHRAE 57 MNK + + +AEK ++K +A L + + I ++ +E + V L GFGTF +R Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALK 86 R G+NP+TGK I I A VP F K LK Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular organisms RepID=C7M6F9_CAPOD Length = 104 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I++K L K + +E+ + + +L+ G V L GFG+F + RAE+TG Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RN +KI A N+PAF K + VK Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVEGVK 90 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ L + + + + IT++L GD V+L GFG F V R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +P F +GK L++ + Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERL 90 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 41/65 (63%) Query: 25 LESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKA 84 + +TL IT L GD V+L GFG FKV R R GRNP+TG+ ++I A+ F GK Sbjct: 30 ISATLDVITGELAGGDPVRLTGFGAFKVTRRTARIGRNPKTGEPVEIPASTGVKFSPGKT 89 Query: 85 LKDAV 89 LK+A+ Sbjct: 90 LKEAL 94 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 NK+ L+ IA+K+ L+K QA+AA+ + E++K G+ ++L G + + RA RTG Sbjct: 3 YNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++I I A+ +G LK AV Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ ++A + L + + + L IT++L G+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG + + VP F +GK L++ Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRE 88 >UniRef50_Q12P41 Histone-like DNA-binding protein n=9 Tax=Shewanella RepID=Q12P41_SHEDO Length = 94 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLI ++ + + S+ Q K LE LA+I ++L EG+ V L FGTF++++R + Sbjct: 1 MNKQQLIASMSRQLQQSQRQTKMELEQVLASIKQALIEGEKVFLPQFGTFELSYRLPQIA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+PQTG I++ NVP LK A+ Sbjct: 61 RHPQTGASIEVEGQNVPRIKFSPNLKAAL 89 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query: 1 MNKTQLIDVIAEKA---------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + E +K A+ AL L +I + K +V + GFG+F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 + R R GRNP+TG ++ I A P F +G LK+A Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEAC 98 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 52/85 (61%) Query: 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 QL +AE LS+ QA L +++I + LK+G +++ G GT +V RA RTGRNP Sbjct: 42 QLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNPA 101 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG+ I+I A+ AF + K L +++ Sbjct: 102 TGEAIEIKASKKVAFRAAKDLSESI 126 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 52/87 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL+D++A+K L+K Q++ A+ + L + +++K+G +V L G GT V A RTG Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P T + I+I A AF LK ++ Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+LI+ +A A A+ +++ I + + G+ V + GFGTF R RT Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++ P F +G+ KD V Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAF Length = 90 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V++EK + K + + L++ ITE LK+G+ L GTFKV RAE+ G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG++I I A F + K L +K Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNLSTLIK 90 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +A + KT A A+E+ + IT ++ G+ V + GFG F+ RA R Sbjct: 1 MNKAELITAVAARIGDKKT-ASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ +++ +VP F +G LK V Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVV 88 >UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PUX5_9BACT Length = 94 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGD-AVQLVGFGTFKVNHRAERT 59 MNKTQLI +A K E+SK A + + L I ++L EGD V + FG F + AER Sbjct: 1 MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60 Query: 60 GRNPQTGKEIKIAAANVPAF 79 G NP TG+ I IAA AF Sbjct: 61 GVNPATGERITIAAREKVAF 80 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK +LI+ +A + KT A AAL++ L + ++ +G+ V + GFG F+ R RT Sbjct: 18 VNKAELIETLAVRLGDRKT-ASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +K+ +VP F G K+ V Sbjct: 77 RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M +++LI+ I E+A + + + +A + + ++++L G ++L GFG F V R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG+ + + A +F +GK L++ Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRE 88 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +I+ + + ++KT+A+ A+E+ ++ ++L++GD ++L GFG F V R GRN Sbjct: 22 KLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIGRN 81 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 P+TG E+ I F GK L+ Sbjct: 82 PRTGAEVSIPPGKAVRFKPGKELQ 105 >UniRef50_B3DZP2 Bacterial nucleoid DNA-binding protein n=2 Tax=Verrucomicrobia RepID=B3DZP2_METI4 Length = 99 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 6/91 (6%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG----DAVQLVGFGTFKVNHRA 56 NK L++V+ + + K KA E ++ A+ LK G VQL+GFGTF+V R Sbjct: 9 FNKASLVEVVQK--NMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRK 66 Query: 57 ERTGRNPQTGKEIKIAAANVPAFVSGKALKD 87 R G NP+TG++IKI A+ F GK LK+ Sbjct: 67 ARMGVNPKTGEKIKIKASKTVRFSPGKELKE 97 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK L +AE+ ++ A+ +++ I + G+ VQ++GFGTF RA R G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I++ A P F +G+ + V Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRV 90 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +N+ QL+ +A + + L++ A AAL++ L I ++L +G V+L GFG+F+V R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 +P+TG+ + + AA F +AL++ ++ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERLR 97 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K Q+++ I + L Q +E L I SL+ GD V + GFG F+V +++R G Sbjct: 3 LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I + A V F L+D + Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRI 91 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A+ L + + + + I+ +L GD V+L GFG F V R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG+ + + +VP F +GK L++ Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRE 88 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A KA + + QA+ L++ +TE++ +GD V L G + + RA RTG Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ + I A G LK A + Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAAR 90 >UniRef50_Q3M1G4 Histone-like DNA-binding protein n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M1G4_ANAVT Length = 80 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 7/65 (10%) Query: 32 ITESLKEGDAVQLVGFGTFKVN-------HRAERTGRNPQTGKEIKIAAANVPAFVSGKA 84 +TE++ GD V LVGFG+F+ +R+ER GRNPQT ++I I A +PAF +GK Sbjct: 14 VTEAVANGDKVTLVGFGSFERRDHEVCRRYRSEREGRNPQTNEKITIPATKIPAFSAGKQ 73 Query: 85 LKDAV 89 ++ V Sbjct: 74 FREKV 78 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++L+ +I + A S ++ L++ + + E L G V L G G V RA R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I I A P F + KALKDAV Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAV 88 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 48/85 (56%) Query: 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 ++ + IA + +L+K QAK ++S AI ++ G L GFG FKV R GRNP Sbjct: 35 EIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGRNPS 94 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG I IAA+ F KA+KD++ Sbjct: 95 TGATIAIAASRKLTFTPAKAIKDSL 119 >UniRef50_Q3EPN6 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis serovar israelensis ATCC 35646 RepID=Q3EPN6_BACTI Length = 76 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +A+ AE+S+ +A +++ + +IT +L G+ VQL+GFGTF+V RA RT Sbjct: 4 MNKTELIKNVAQNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAARTA 63 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K+ +I+ + L++ + + +E+ ++ESL +G V+L GFG F++ + R G Sbjct: 4 LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + ++A V F +G+ + V Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQV 92 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++D IA + ++ + K +E + AI+ + EG+ ++L GFG FK R ER Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP+TG+ + I A P F K L Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDL 92 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L +++ E+ L+K ++K +++ I++ L EG V++ GFG F++ +A R G Sbjct: 13 LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I I + V F + LK+ ++ Sbjct: 73 RNPRTGEAIPIESRRVVTFHASHKLKEQIQ 102 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +NK + ++ I + ++K + AL L + ++++ G + +VGFG+F V RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 G NP+TG +I I + F GK LKDA Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDAC 123 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++ I+E+ L++ + K ++ T AI E+L E ++L FG F+V RA R Sbjct: 57 VTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKA 116 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ + +A V F GK +++ V+ Sbjct: 117 RNPRTGQPVYVAEKFVVTFKPGKEMEEKVR 146 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L++ I E+ L +T+ +E+ + E+L+E + V++ GFG F V + R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+T + ++I V F + LK +++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQ 90 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L D + + LS+ ++ +ES L ++++L G++V++ FGTF V ++ R G Sbjct: 6 LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94 >UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi RepID=Q5LM20_SILPO Length = 91 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KTQL+ +AE K A AAL++ A IT + G AV L G G R ER Sbjct: 1 MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ AA V KALKD+V Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSV 89 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A E L++ + + L + +L++G V+L GFG V R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALK 86 GRNP+TG+ + + A +VP F SGK L+ Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELR 87 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 50/86 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ EK + A A+E + I ++ G++V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 RNP+TG+ +K+ +VPAF G K Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFK 86 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 43/71 (60%) Query: 16 LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAAN 75 +SK +++ L AI E+L+E +++ GFGTFK+ R R RNP+TG ++++A Sbjct: 22 ISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQRKTRMARNPRTGSPVEVSARP 81 Query: 76 VPAFVSGKALK 86 VP F K L+ Sbjct: 82 VPVFKPSKELR 92 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 44/82 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI IA K+ L K Q +E + AI E+L +G++V LVGFGTF+V R R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSG 82 N TG+ + I F G Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPG 82 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + K LS+T++ A +E L + +++ G+ V+L F TF+V + ER G Sbjct: 6 VTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F + LK + Sbjct: 66 RNPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N + LI IAE+ S+ KA L + I ++ + G + G G FK + RA R G Sbjct: 4 LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP TG EI+IAA++ +F KA KD Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKD 90 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 46/75 (61%) Query: 16 LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAAN 75 +SK AK +E+ I +L+ G+ V++ GFG F++ + ER GRNP+TG++I I A Sbjct: 18 ISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPGRNPKTGEDIPITARR 77 Query: 76 VPAFVSGKALKDAVK 90 V F G+ LK V+ Sbjct: 78 VVTFRPGQKLKSRVE 92 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI ++ + S+ + ++ + I+E L G+ L G G F + RA RTG Sbjct: 3 LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA+ F + K LKD V Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQV 91 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI +AE+A + K + +++ I E L G + L G F++ +A R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I A F KALKDAV Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL++++A++ L+K Q++ A+ S L + +L+ G +V L G GT V A RTG Sbjct: 36 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 P T ++I+I A AF LK Sbjct: 96 PGTSEKIQIPAGKKVAFKVASTLK 119 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 45/85 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L I+ K A +ES + + ESL++G+ V L GFG+F V RAE+T Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RN I I A N+PAF K L Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKEL 85 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+++I+++ + + + + I +SL E + V + FG+F++ H+A R Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + N FV GK L D + Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLL 89 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+D IAE+ ++K +++ L + + E +K+ + L+GFGTF V + R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP T I+I A V F L +K Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLLK 90 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ +A + +K A AL + + L G+ + + G GTF + ++A R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA F + KAL DAV Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAV 89 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MNKTQLID-VIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ V A +LSK Q ++S + + +++ + GFGTF V RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG EI+IA F LK A+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ L++ + E+ L K L T A+T++L +GD V++ G G+FKV + R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALK 86 RNP+TG +++ V F GK LK Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLK 87 >UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=Pseudomonas syringae group RepID=UPI0001BC8A49 Length = 104 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K QL+ IAE + KT A+ ALE + + L+ G + L G G KV R RTG Sbjct: 3 LTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I+IAA FV K L D++ Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSI 91 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI+++ K +++ QA++ +E+ ++ ++L G+ +++ G G F V H G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I + F +GK L+D V Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++ I+E+ L++ + K ++ T AI ++L E ++L FG F+V RA R Sbjct: 20 VTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKA 79 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+++ + + V F GK +++ V+ Sbjct: 80 RNPRTGEKVYVPSKFVVTFKPGKEMEERVR 109 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MN++QLI+ I E A L+KT + L + E+L GD V + G V RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 TGRNPQTG+ ++I A V KALK+ V+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQ 92 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L+ +A + ++ + + + + + L I+ SL++G V L FG+ + R ER Sbjct: 121 VTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+++ + A P F K LKD V+ Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKVR 210 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + K LS+T++ +E+ + I ++ G+ V+L F TF++ + ER G Sbjct: 6 VTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I+ V F + LK + Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRI 94 >UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 Tax=Anaeromyxobacter RepID=A7HII4_ANADF Length = 123 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 44/87 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M + Q +AE A+LSK Q + ++ +T+ LK + L G G K+ R R G Sbjct: 29 MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP TG++IKI A K LKD Sbjct: 89 RNPATGEQIKIPARTAIKITPAKGLKD 115 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 1 MNKTQLID-VIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + QLI V A L QA A + + L ITE+L EGD ++L GFG K R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG+ +++ A AF + + + + Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHE 88 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 51/87 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + L D +A +K A+ A++ AAI ++ +G+ V L GFG FKV R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP TG+ IKIAA+ +F KA+KD Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKD 88 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K LI + +K E L+K QA ++E+ L ++L G + L GFG F V ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG E+ + A V F L+D + Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKI 92 >UniRef50_B5JL43 DNA-binding protein HU n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JL43_9BACT Length = 104 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 15/102 (14%) Query: 1 MNKTQLI-DVIAEKAELSKTQAKAALESTLAAITESLKEGD--------------AVQLV 45 MNK++LI ++ + SK +A+ AL + L++I ++K+ A+QLV Sbjct: 1 MNKSELIAEIQSNLGASSKAEAEKALSAVLSSIKTAVKKAGKEVKLRDKDSKDAVAIQLV 60 Query: 46 GFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKD 87 GFGTF V R+ RTG NP T + +KI A+ F +G LKD Sbjct: 61 GFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKD 102 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ VI+E+ L++ + K ++ T AI ++L ++L FG F+V RA R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG + + V F GK ++ V+ Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVR 90 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 50/88 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + +V+ + +++ QA + I ++L G++V+L FG F + ++ R G Sbjct: 3 ITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG+ ++I+A V F SG LK A Sbjct: 63 RNPKTGEMVEISARRVVVFKSGPKLKLA 90 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++LI+ +A+ ++ A+ A+ ++ +L D +++ GFG+FKV + G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I++ + +P F GK LK+ V Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Query: 1 MNKTQLIDVIAEKAE---LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 MN+T +++ L + + AL+ + IT S+ G++V+L GFGTF+V R + Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 58 RTGRNPQTGKEIKIAAANVPAF 79 R GRNP+TG+ + I + V F Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVF 82 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 25 LESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKA 84 ++S L + ++L EG++++LV FGTF V +A RTGRNP+TG+ I I +F K Sbjct: 37 VDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTGRNPRTGEPITITKRQAVSFRPSKK 96 Query: 85 LKDAV 89 L++ V Sbjct: 97 LREQV 101 >UniRef50_A3RUQ6 DNA-binding protein HU n=4 Tax=Betaproteobacteria RepID=A3RUQ6_RALSO Length = 91 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 47/79 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI +A+KAE++K +A+ L + I ++++ G+ + + G F RA +TG Sbjct: 1 MTKQELIKHLADKAEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKTG 60 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNP+TG I IAA P F Sbjct: 61 RNPKTGDVIAIAAKRAPKF 79 >UniRef50_Q02AB3 Histone family protein DNA-binding protein n=3 Tax=Bacteria RepID=Q02AB3_SOLUE Length = 100 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + +TQL+ +AEKAE++ A+A L++ A +K+ L G G R R G Sbjct: 6 LTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ IKIAA V F K+ KDA+ Sbjct: 66 RNPATGEAIKIAAKKVVKFRVAKSAKDAI 94 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + + LS+ ++ +ES L ++++L G+ V++ FGTF V ++ R G Sbjct: 6 LTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_Q9PQK9 DNA-binding protein HU n=15 Tax=Ureaplasma RepID=DBH_UREPA Length = 130 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 49/87 (56%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 ++Q+ID +++ + K Q KA +++ A + L V+L G FKV+ RAER G N Sbjct: 10 RSQMIDELSKMLNIEKKQTKAFMDTYEAFLILELSRAKEVRLGNIGKFKVSVRAERKGIN 69 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P+TG+ + I +P F K +K+ + Sbjct: 70 PKTGETVIIPEKTIPKFTFTKGIKEII 96 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ +AE+ K A++ L +I E+L+E V++ GFG+F V R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TGK + I F K+LKD + Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + EK L + +A +E L I +L+ G+ ++L FG+F + ++ER G Sbjct: 20 LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I V F + +KD + Sbjct: 80 RNPKTGEIVPITPRRVIVFKASNIMKDRI 108 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 3 KTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L+D I LS+ Q + E L I+E+L G+ V+L FG F V + ER GR Sbjct: 22 RADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIGR 81 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG E+ I V F + L +V Sbjct: 82 NPRTGVEVPIKPRRVLTFKASPVLAASV 109 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 42/74 (56%) Query: 16 LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAAN 75 ++K A+ A ++ + + + + G V+L G G F V RA RTGRNPQTG+ I I A Sbjct: 20 VTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAARTGRNPQTGQSISIPARK 79 Query: 76 VPAFVSGKALKDAV 89 F++ K L D + Sbjct: 80 AVKFMAAKTLVDGL 93 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAA---LESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 M + ++ I EK E S+ AK + L I+ +L+ G+ V++ GFGTF V + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKAL 85 R GRNP+TG+ + I A + F ++L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88 >UniRef50_P04445 Transcription factor 1 n=2 Tax=Bacillus phage SPO1 RepID=TF1_BPSP1 Length = 99 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 49/88 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI IA+ EL++ L S TE++ +GD VQL GF K R R G Sbjct: 1 MNKTELIKAIAQDTELTQVSVSKMLASFEKITTETVAKGDKVQLTGFLNIKPVARQARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 NPQT + ++IA + + G++LK A Sbjct: 61 FNPQTQEALEIAPSVGVSVKPGESLKKA 88 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI V+AE+ ++Q + + I E+L +G+ V + GFGTF+V+ RA R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A P+F G LK AV Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +LI ++AE+ ++ A +E + I +L+ G+++++ FG F+V + R G Sbjct: 3 LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I I V +F L+ A+ Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAI 91 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN++QLI+++A+K L+K K ++ I + +KEG + L GFG+FK ++ R Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 61 RNPQTGKEIKIAAANVPAF 79 RN + G ++++ + F Sbjct: 61 RNLKNGTAVQLSPRTIIHF 79 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 44/89 (49%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI IA+ + K +E L + E L EG+ +++ GFGTF R R Sbjct: 4 ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I VP F +KD + Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKI 92 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ L +A E ++ A+ ++ L A+ E L GD V++ FG +V+ +A R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG + I A F G+ALK+A K Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNAQK 91 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ IAE+AE++K + A+ + E++ GD++ + GFGT R + Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN G + + VP F KA K V Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQV 89 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + KT++ + + ++S+ + +E L I E+L++G+ V + GFG F VN + R G Sbjct: 3 LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP T +E+ + A V F L++ + Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLI 91 >UniRef50_Q9ZL08 DNA-binding protein HU n=24 Tax=Epsilonproteobacteria RepID=DBH_HELPJ Length = 94 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MNK + ID++ + + SK +A+ A+ + A+ +L +G++V+LVGFG F+ + + Sbjct: 1 MNKAEFIDLVKKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 G+ P + K K VP F GK LK V Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ IA++ K +E+ + ++ ++ EG+ V L GFG+F + HRAE+ Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN I I A ++PAF KA D V Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMV 89 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I+++ L++ + K ++ T AI E+L ++L FG F+V RA R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG ++ + V F GK +++ V+ Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVR 90 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 44/71 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ + E+ L K +A + + + + ++EG+++ + GFG+F ++ER Sbjct: 8 MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 67 Query: 61 RNPQTGKEIKI 71 RNP+TG+E+ I Sbjct: 68 RNPKTGEEVMI 78 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ IA KA +S+ L + T+SLK GD V L G G + R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ ++I A VP + L DA+ Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDAL 89 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++D I EK + ++ + K +ES L + +++K+ A+ + GFG F+ + R G Sbjct: 6 LTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNPQT + I + V F Sbjct: 66 RNPQTDETITLPPRKVVVF 84 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 45/80 (56%) Query: 10 IAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEI 69 ++E E+ K QA+A + + + LK+G +++ G G +V R GRNP TG+EI Sbjct: 11 LSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKGRNPATGEEI 70 Query: 70 KIAAANVPAFVSGKALKDAV 89 KI A+ AF K LK+ V Sbjct: 71 KIKASKKVAFRPSKDLKERV 90 >UniRef50_UPI0001699D1F integration host factor, beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699D1F Length = 122 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+++ +++ L+ + A++ + ++++L G+ +++ GFG+F +++R R Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 60 GRNPQTGKEIKIAAANV 76 GRNP+ G + AN+ Sbjct: 61 GRNPKNGYDPSPCLANM 77 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + + I + LS+T++ +++ L I +L G+ V L F F V ++ R G Sbjct: 6 LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++ +IAA V +F + A+K ++ Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQIQ 95 >UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN7_9SPIO Length = 112 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG-R 61 KT ++D I +K++ + + A + ++L+ G+ +++ GFGTF V R R G R Sbjct: 12 KTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGMR 71 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+ + A +V F GK L AV+ Sbjct: 72 NPKTGELVDTADHSVVVFRPGKILSAAVR 100 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 44/87 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L +A + LS++ A A+++ + + K V + GFGTF R R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP T + IKI AF ALKD Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 44/89 (49%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K ++++I EK L+K ++ + + + + V++ GFG F+V R R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E I V F + KD V Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEV 89 >UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSB6_9PROT Length = 95 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG--DAVQLVG-FGTFKVNHRAE 57 M+K + I +A ++S +AK +E I LK D +G FGTF + R Sbjct: 1 MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRPA 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 R GRNP+TG+EIKI A+ F LK A Sbjct: 61 RKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V+A + L+K A L+ I +++K+ GFGT+ V R R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + +K+ A+ F K LK+++ Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 42/70 (60%) Query: 20 QAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF 79 +AK AL++ AIT + + V+L GFG F + R+ R GR+ +TG+ I I A V F Sbjct: 21 EAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRAGRDIRTGQPISIPAKKVIVF 80 Query: 80 VSGKALKDAV 89 GKAL+ AV Sbjct: 81 KPGKALRQAV 90 >UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabacteroides RepID=B7B9I2_9PORP Length = 136 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 45/83 (54%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K LI +A++ E + AK L S + ITE L EG+ V + FG +++ ER GRN Sbjct: 46 KRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPGRN 105 Query: 63 PQTGKEIKIAAANVPAFVSGKAL 85 +TG+E KI A F + + L Sbjct: 106 LRTGEECKIRARTSVKFKASEIL 128 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + LI IAEK A +S + ++ + ++ + EG+++++ FG F+++HR R Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+++ + F GK LK +K Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMK 91 >UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5S4_MYCS5 Length = 91 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT+ I +++K L+ + + + + E L G+ VQL G F V RAERT Sbjct: 1 MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +N TGKE +AA V + K L D V Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVV 89 >UniRef50_C7LVH5 Histone family protein DNA-binding protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVH5_DESBD Length = 101 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 11/85 (12%) Query: 8 DVIAE-KAEL--SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 D+IA KAE+ S+ +A+ +++ + +ITESL +GD + L G GT V R+ R G + Sbjct: 14 DLIARLKAEMGYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKGEDHS 73 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG++IK F GK LKDA+ Sbjct: 74 TGRDIK--------FSPGKRLKDAL 90 >UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Haemophilus influenzae 22.1-21 RepID=A4MZU5_HAEIN Length = 91 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 39/64 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +I+ +++K LSK K +E+ L I SL+ G V+L GFG F++ ++ R G Sbjct: 4 ITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRPG 63 Query: 61 RNPQ 64 RNP+ Sbjct: 64 RNPK 67 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 46/87 (52%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K L + IA K + + K ++ L I L +G+ ++L FG F++ RA R RN Sbjct: 6 KRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKARN 65 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P+TG+ + + NV F GK +++ V Sbjct: 66 PRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + ++D + + L++ + LE L + E L ++V+L FG F V + R G Sbjct: 6 ITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARVG 65 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNP+TGKE I A V F Sbjct: 66 RNPKTGKEAPITARRVVTF 84 >UniRef50_C6JJT3 Predicted protein n=4 Tax=Fusobacterium RepID=C6JJT3_FUSVA Length = 111 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K + +++ KA + +K +A ++ + + E L +G+ V +GFG F+ RA RT Sbjct: 6 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKAL 85 NPQT K +K+ A V F +GK L Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNL 91 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + + +A+ +SK A+ + + L + GF TF+V + R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI I A F +GK D V Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKV 89 >UniRef50_Q2NJP6 DNA-binding protein HU n=12 Tax=Candidatus Phytoplasma RepID=Q2NJP6_AYWBP Length = 96 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 1 MNKTQLIDVIAE--KAELSKTQA-KAALESTLAAITESLKEGDAVQLVG-FGTFKVNHRA 56 M K +LI IAE K +SKT+ + E TL ES+ + V L G F + R Sbjct: 1 MTKKELIKNIAEANKTSISKTEEFYHSFEHTLI---ESITSNEEVILSSKIGKFILKTRK 57 Query: 57 ERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 TGRNPQTGK++KI A + F K +KD VK Sbjct: 58 AYTGRNPQTGKKLKIPAKTIVTFKLSKTIKDKVK 91 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 41/86 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+ LI IA K LS Q ++ L + + L + V L FG F V G Sbjct: 1 MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 R+PQTG+ +K+ NVP F S L+ Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELR 86 >UniRef50_B7J8S4 DNA-binding protein HU family protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J8S4_ACIF2 Length = 91 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 11/86 (12%) Query: 10 IAEKAELSKTQAKAALESTL-----------AAITESLKEGDAVQLVGFGTFKVNHRAER 58 I+ K +L+K+ A L T+ +I E + EG V++ FGTF+ HRA R Sbjct: 4 ISGKKDLAKSLVDAGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIHRAAR 63 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKA 84 GRNPQTG E++I V F + K+ Sbjct: 64 MGRNPQTGGELEIPERKVLTFKASKS 89 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I EK E ++ + K ++ L + +S+K +++ + GFG F+ + R G Sbjct: 6 LTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNPQT I + V F Sbjct: 66 RNPQTNASIMLPPRKVVVF 84 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A+K +++ +A +++ TE+L+ ++ L+GFGT + ER G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP+ G I A F GK L Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLL 85 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I E+ + S+ + K +E L + +S+K+ A+ + GFG F+ + R G Sbjct: 6 LTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65 Query: 61 RNPQTGKEIKIAAANVPAF 79 RNPQT + I + V F Sbjct: 66 RNPQTEEAITLPGRTVVVF 84 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 131 7e-30 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 130 1e-29 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 128 5e-29 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 128 6e-29 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 127 8e-29 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 123 2e-27 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 122 3e-27 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 121 9e-27 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 121 9e-27 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 120 1e-26 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 120 1e-26 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 120 1e-26 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 120 1e-26 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 120 2e-26 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 119 3e-26 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 119 3e-26 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 118 4e-26 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 117 9e-26 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 117 2e-25 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 116 3e-25 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 116 3e-25 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 115 3e-25 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 115 3e-25 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 115 3e-25 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 115 4e-25 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 115 5e-25 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 115 6e-25 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 115 6e-25 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 114 8e-25 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 114 8e-25 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 114 1e-24 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 113 1e-24 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 113 2e-24 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 113 2e-24 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 112 3e-24 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 112 4e-24 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 112 4e-24 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 112 4e-24 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 112 5e-24 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 112 5e-24 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 112 5e-24 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 111 6e-24 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 111 8e-24 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 111 9e-24 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 110 1e-23 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 110 1e-23 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 110 1e-23 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 110 1e-23 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 110 1e-23 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 110 1e-23 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 110 1e-23 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 110 1e-23 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 110 1e-23 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 109 2e-23 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 109 3e-23 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 109 3e-23 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 108 4e-23 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 108 4e-23 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 108 5e-23 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 108 6e-23 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 108 6e-23 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 108 6e-23 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 108 7e-23 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 107 9e-23 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 107 9e-23 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 107 9e-23 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 107 1e-22 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 107 1e-22 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 107 1e-22 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 107 1e-22 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 106 1e-22 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 106 2e-22 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 106 2e-22 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 106 2e-22 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 106 2e-22 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 106 2e-22 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 106 2e-22 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 106 3e-22 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 106 3e-22 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 106 3e-22 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 105 3e-22 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 105 3e-22 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 105 3e-22 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 105 4e-22 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 105 4e-22 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 105 4e-22 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 105 5e-22 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 105 5e-22 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 105 5e-22 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 105 5e-22 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 105 6e-22 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 105 6e-22 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 104 8e-22 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 104 9e-22 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 104 1e-21 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 104 1e-21 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 104 1e-21 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 104 1e-21 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 104 1e-21 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 103 2e-21 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 103 2e-21 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 103 2e-21 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 103 2e-21 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 103 2e-21 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 103 2e-21 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 102 3e-21 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 102 3e-21 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 102 3e-21 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 102 3e-21 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 102 4e-21 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 102 4e-21 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 102 4e-21 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 101 6e-21 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 101 6e-21 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 101 6e-21 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 101 6e-21 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 101 6e-21 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 101 7e-21 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 101 7e-21 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 101 7e-21 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 101 9e-21 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 101 9e-21 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 101 1e-20 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 100 1e-20 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 100 1e-20 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 100 1e-20 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 100 1e-20 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 100 1e-20 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 100 1e-20 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 100 1e-20 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 100 2e-20 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 100 2e-20 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 100 2e-20 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 100 2e-20 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 100 2e-20 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 100 2e-20 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 100 2e-20 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 100 2e-20 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 99 3e-20 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 99 4e-20 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 99 4e-20 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 99 4e-20 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 99 4e-20 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 99 4e-20 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 99 4e-20 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 99 5e-20 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 99 5e-20 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 99 5e-20 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 99 6e-20 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 98 7e-20 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 98 9e-20 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 97 1e-19 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 97 1e-19 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 97 1e-19 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 97 1e-19 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 97 1e-19 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 97 1e-19 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 97 1e-19 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 97 2e-19 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 97 2e-19 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 96 3e-19 UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 96 3e-19 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 96 4e-19 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 96 4e-19 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 96 4e-19 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 95 4e-19 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 95 4e-19 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 95 5e-19 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 95 5e-19 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 95 5e-19 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 95 6e-19 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 95 6e-19 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 95 6e-19 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 95 6e-19 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 95 8e-19 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 94 1e-18 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 94 1e-18 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 94 1e-18 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 94 1e-18 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 94 2e-18 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 94 2e-18 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 94 2e-18 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 94 2e-18 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 93 2e-18 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 93 2e-18 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 93 3e-18 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 93 3e-18 UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen... 93 3e-18 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 93 3e-18 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 92 4e-18 UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=... 92 4e-18 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 92 4e-18 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 92 4e-18 UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi... 92 4e-18 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 92 5e-18 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 92 5e-18 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 92 7e-18 UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri... 92 7e-18 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 91 8e-18 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 91 8e-18 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 91 9e-18 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 91 9e-18 UniRef50_A6L5E8 DNA-binding protein HU n=9 Tax=Bacteroides RepID... 91 1e-17 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 91 1e-17 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 91 1e-17 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 91 1e-17 UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT 91 1e-17 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 91 1e-17 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 91 1e-17 UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C... 91 1e-17 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 91 1e-17 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 90 1e-17 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 90 1e-17 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 90 1e-17 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 90 1e-17 UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus... 90 2e-17 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 90 2e-17 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 90 2e-17 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 90 2e-17 UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M... 90 2e-17 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 90 2e-17 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 90 2e-17 UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=... 90 2e-17 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 90 2e-17 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 90 2e-17 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 90 2e-17 UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri... 90 2e-17 UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema... 90 2e-17 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 90 2e-17 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 90 3e-17 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 90 3e-17 UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ... 90 3e-17 UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero... 90 3e-17 UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius... 90 3e-17 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 90 3e-17 UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID... 89 3e-17 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 89 4e-17 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 89 4e-17 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 89 4e-17 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 89 4e-17 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 89 5e-17 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 89 5e-17 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 89 5e-17 UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 88 7e-17 UniRef50_C4K783 Integration host factor (IHF), DNA-binding prote... 88 7e-17 UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re... 88 8e-17 UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA6... 88 9e-17 Sequences not found previously or not previously below threshold: UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 89 4e-17 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+AELSK A A+++ +IT +LKEG VQLVGFG+F+V R+ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A PAF GK LKDAV Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 130 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 67/89 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ +AE +ELSK A A++S I ++LK GD +QL+GFG F+V R+ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A+ VPAF GKALKDAV Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 51/90 (56%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AE+ ++SK A + + I ESL +GD+VQL+GFG F+V RA R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI IAA PAF +GK LKDAVK Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 57/90 (63%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LID +A A LSK +A A+++ + ITE+LKEGD+V LVGFGTF+V RAER G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA+N P+F GKALKDAVK Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVK 90 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 53/90 (58%), Positives = 70/90 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+A+L+K +A +A+++ +I SL +G+ VQL+GFG F+V RA R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI I A+ VPAF +GKALKDAVK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 50/89 (56%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK L+K A+ AL + L +I E+L GD VQLVGFGTF+ RA R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI IAA VP F +GK L+++V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 57/89 (64%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L+ +A A LSK A A++ AIT +LK GD V+LVGFGTF V RA GR Sbjct: 48 NKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEGR 107 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG++I I A+ P F +GK LKD ++ Sbjct: 108 NPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 71/90 (78%), Positives = 78/90 (86%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LID IA AEL+K QAKAALE+TL AIT SLKEG+ VQL+GFGTFKVN RA RTG Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG EI+IAA+ VPAFVSGKALKDA+K Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 121 bits (304), Expect = 9e-27, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ L+ VI++ + L+K + AL++ AIT +L GD V + GFG+F V RA RTG Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I+I A+ VPAF +GK LK++V Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESV 89 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A+ A+ + +I ++L EGD VQ++GFGTF+V R+ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A+ PAF +GKALKDAV Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAV 89 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K+ A +A+++ + LK ++L GFG+F V+HRA G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAV 89 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ IA ++ L+ + A++ L ++E+L G +++ GFG+F ++HR R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A VP F GK L++ V Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERV 90 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ +++ + LSK +A L+ LA I +SLK+G+ V LVGFGTF+ + RTG Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ ++I A VP F +GK+L++A+ Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 73/90 (81%), Positives = 80/90 (88%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+D IA KA+LSK QAK ALE + IT+SLKEGDAVQLVGFGTFKVNHRA RTG Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI+IAAANVP+FV+GKALKDAVK Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ +AE + LSK A +++T AAIT +LK GD V+LVGFG+F V RA + G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG IKIAA+ P F +GK LKDAV Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAV 115 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 49/90 (54%), Positives = 61/90 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AEK +SK + ++E I+E+LK G+ V + GFGTF+V RA R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI I A PAF KALKDAVK Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 118 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL+ + A+TE+LK+GD V LVGFG+F V RAER G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI I +A P F GKALKDA+ Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 117 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 45/90 (50%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+D IA + L+K A LE+ +A +T+ LK+GD V + GFG+F +R+ RTG Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGK I+I A+ V F +GK LK+AV+ Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQ 98 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL++ + ++T +LK GD+V LVGFGTF V R R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK ++IAAA P F +GKALK+AV Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A LSK A AL +T AIT ++ D VQL GFG+F V +RA RTG Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I A+ V AF +GKALK+AV Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A + +L+ A+++ L A+T++L G +++ GFG+F ++ R+ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK L++ V Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI IA++AELSK A + + ++ +T+ LK+G+ V LVGFGTF AER G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + IAA P F SGKALKDAV Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 56/90 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +L +++ E+ L+K +AK +++ I E+L GD+V+L GFG F+V + R G Sbjct: 12 LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA V F + + LK V+ Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSTVE 101 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 51/90 (56%), Positives = 62/90 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLID IAE A ++K +A L L ITESLK+ ++VQLVGFGTF V HR R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I++ A VP+ KALKDA+K Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALK 90 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 54/89 (60%), Positives = 69/89 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI+ IA A+++K +A AL+ L+AI ++L + D+V LVGFGTFKV RA RTG Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG EIKI AA VP F +GKALKDAV Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +AE EL+K + AA+++ ++I L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG EIKIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +I+ + EK SK ++ +E + E+L+ GD +++ GFG F+V + R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGKEI+I+A V F + LK A+ Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSAL 89 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+KT+LI +AEK LSK Q + + L+ I + L G V+LVGFGTF +RA R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ + I +V F G LK V+ Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+++A K + L+ + ++++ L ++++L GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L++ V Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERV 90 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 63/91 (69%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +L++ I KA L +K QA++AL++T+A + +++ G++V GFG+FKV RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+EI I A V F GK LKDAVK Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ IAE L + + + + L I +L GD V+L GFG F V HR R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +VP F +GK +++ + Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERL 90 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 47/89 (52%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A A +SK+ A +++ L AIT+++ +AVQL+GFG F R+ RTG Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI IAAAN F +GKA KDAV Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QL+D IA++ E ++ A A+++ AI E++ G+ V + GFG F+ RA RTG Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ + +AA+ VP F G K +V Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ +AEK+EL+K A+ AL S + ++ E+L +GD VQLVGFGTF+V R R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ ++ I+I A+ P F +GK LK+ + Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ ++A + L + + + L IT++L G+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG + + VP F +GK L++ + Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERL 90 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ I L S + A+++ L +++ L GD +++ GFG+F +++RA R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L+D V Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI+ ++ E+++ +++ +E+ +I SL+ GD +++ GFG+F+ R R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG +++ A +P F K LKD V Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVV 89 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L IAEKA+L+K QA L + L IT +L D+V LVGFGTF HR RTG Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GKAL+DAV Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAV 89 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI I+ + LSKT ++ AL + ++ +TE L +GD++ L GF + V RTG Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ I+IAA+ V +F +G LK+A+ Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A + SK Q L++ L I +++ +GD+VQL+GFG+F RA RTG Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ IKI AA F +GKA KDAV Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAV 89 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A+ L + + + + I+ +L GD V+L GFG F V R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +VP F +GK L++ + Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERL 90 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L++ +A + +L A ++++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+ + + VP F +GK L++ V Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK++L+K A+ AL++ + ++ E+L++G+ VQLVGFGTF+ RA R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I I A VP F +GK KD V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A A+++ L A++++L G +++ GFG+F +N R R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G ++ + VP F GK L++ V Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV 90 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 55/90 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + + + ++ L+K +AK +E I +L++G+AV+L GFG F++ + ER G Sbjct: 3 LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+EI I A V F G+ LK V+ Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + + + + +SK AK +E+ I +L+ G+ V++ GFG F++ + ER G Sbjct: 3 LTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I A V F G+ LK V+ Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A E L + + + I+ +L++GD V+L GFGTF V +R RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ +++ VP F +GK +++ + Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERL 90 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +NK + ++ I + ++K + AL L + ++++ G + +VGFG+F V RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 G NP+TG +I I + F GK LKDA Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDA 122 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A + +L A A+++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++++ +VP F GK L++ V Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV 90 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ LI+ +A + + +AA++ L + +L+ GD +++ GFG+F +++RA R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++++ VP F GK L++ V Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERV 90 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M +++LI+ I E+ + + + +A + + ++++L G ++L GFG F V R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A +F +GK L++ + Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERL 90 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 61/89 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + ++ +A++ ++S+ QA AL + L I E + G+ V GFG+F+V+ RAERTG Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG IKIAA+ VP F +G LK A+ Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAI 89 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI +AEK++L+K A+ AL++ + ++ E+L+ G+ VQLVGFGTF+ RAER G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +EI I A+ P F +GK LK+ V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI + ++ LSK+QA +E L+ +SL+EG+ + L GFG F V + R G Sbjct: 3 LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+E+ +A V F L+ V Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRV 91 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID +AEK L+ +A+ + L ++++L EG +++ GFG+ V G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI++ +P F GK L++ + Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 55/90 (61%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI++I++K+ LSK Q K LE TL AI +SLK+G++VQLVGFGTFKVN+RA R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I I+A P F+SGK K A+K Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ L + + + + IT++L GD V+L GFG F V R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +P F +GK L++ + Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERL 90 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 108 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+LI+ +A A A+ +++ I + + G+ V + GFGTF R RT Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++ P F +G+ KD V Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 41/90 (45%), Positives = 57/90 (63%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ + KA LS+ A+ A+ + IT L E V LVGFG+F V RA R+G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 R+PQ+G+ I I A + P F KALK+ V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQ 90 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI ++ + S+ + ++ + I+E L G+ L G G F + RA RTG Sbjct: 3 LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA+ F + K LKD V Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQV 91 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +IA + L + + + IT +L EG+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F +GK L+D + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+ +A+K+EL+K A+AAL S IT+SL EGD VQ+ GFGTF +++ RTG Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I AN F + KALKD + Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +A +++LS + ++A++ L + +L+ GD +++ GFG+F +++RA RT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG +++ VP F GK L++ V Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI V+ ++A+L+KT+A +E ++TE+L + V++ G +F + TG Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++ I A +P F GK LK+ V Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL++V+A+ + SK A+ A+ L +I E+LK+G VQLVGFG F V R R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN +TG+E+++ A VP F +G LK A+ Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKAL 111 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LID IA+ L+K + +A +E + A+ ++KEG ++L FG F+V HRA RTG Sbjct: 3 MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + ++I P F L +AV Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 50/85 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +AEKA L+K A+ A+ + +TE + G+ + L+GFGTF V+ RA R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP+T K I I A V F G L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++ I+E+ L++ + K ++ T AI ++L E ++L FG F+V RA R R Sbjct: 21 TKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKAR 80 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+++ + + V F GK +++ V+ Sbjct: 81 NPRTGEKVYVPSKFVVTFKPGKEMEERVR 109 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A+ ++ L A+ +SL G+ +++ GFG+F +N+R R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK +++ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L +++ E+ L+K ++K +++ I++ L EG V++ GFG F++ +A R G Sbjct: 13 LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I I + V F + LK+ ++ Sbjct: 73 RNPRTGEAIPIESRRVVTFHASHKLKEQIQ 102 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 106 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A E L++ + + L + +L++G V+L GFG V R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A +VP F SGK L+ + Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARL 90 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 106 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 53/88 (60%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L++ I+ L+K + +A ++ +I +SLK G +++ GFG+F + ++ ER R Sbjct: 6 TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+++ + A NVP F K K AV Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAV 93 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A +A+++ + LK G ++L GFG+F V+ R G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F +GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAV 89 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I+++ L++ + K ++ T AI E+L ++L FG F+V RA R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG ++ + V F GK +++ V+ Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVR 90 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 59/85 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ +AEKAE+++ A L++ + +I ++L GD VQ++GFG+F+V R ER Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 +P TGKEI + A VPAF GK+L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L VIAEKA+L+K +A L + L +IT +L + D V LVGFGTF+ HR RTG Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GK LKD+V Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSV 88 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++ + + E L+K AK +ES I E+L+ G+ V+L GFG F + + +R G Sbjct: 3 LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I+A V F G+ LK V+ Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +LI+ IA L+K +A+ AL TL AI +++ +GDA+ LVGFGTF RAER Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ ++AV Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAV 111 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++ I+E+ L++ + K ++ T AI E+L E ++L FG F+V RA R R Sbjct: 58 TKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKAR 117 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+ + +A V F GK +++ V+ Sbjct: 118 NPRTGQPVYVAEKFVVTFKPGKEMEEKVR 146 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ + EK +S + A++ L ++++L+ GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++K+ A VP F +GK L++ V Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M ++ LI IAEK +++ +AK + TL +I ++L GD VQ VGFG+F+V RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQ G EI I + F +GK LKD V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+D +A K L + A+ A+++ L IT +L+ G+ V + FGTF V HR R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP G + I VP F +GK ++D + Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRL 90 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I E+L + + VQ++ FGTFKV HR ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK A V F +GK+LKD+V Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I EK SK ++ +E I E+L+ G+ +++ GFG F V +A+R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG EI I+A + F + LK ++ Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK +LI IA+ AE+SK +A+ AL S + I +++ +GD+VQL+GFGTF + RA R G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +KIAAA F +GKA KD+V Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSV 101 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ L IA+++ S Q L++ +T+++ GD VQ++GFGTF + R R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+EI++ A F +G L+ AV Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAV 89 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 41/90 (45%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ LID IAE E SK L+S + + + +G AV+L GFGTF+ A RTG Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG IKI + + P F G KD VK Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVK 90 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 44/90 (48%), Positives = 66/90 (73%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ IA+K+ELSK +++ AL + + + E+L +G+ VQLVGFGTF+ R R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ +E I+I A+N P F +GK+LK+AV Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +LID IA + +LSK LE L I +++K+GD VQLVGFGTFK RA RTG Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TG+ +KI A VP FV+G K V Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + I +AE+ +SK +A+ +++ L ++E L+ G+ V L GFGTF+V R R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+T + + I A P F + +LK V+ Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVR 90 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 40/89 (44%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN +L ++A+K +S+ A A+ +TL AI+ESL + V L+GFGTF V RA R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG++I I+A+ F +G++L++ V Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKV 89 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A+K L K +AK L++ + +TE + E + + LVGFGT + +R Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG + I A F GK L +A+ Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAM 89 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L D + + LS+ ++ +ES L ++++L G++V++ FGTF V ++ R G Sbjct: 6 LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI +AE+A + K + +++ I E L G + L G F++ +A R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I A F KALKDAV Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ VI+E+ L++ + K ++ T AI ++L ++L FG F+V RA R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG + + V F GK ++ V+ Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVR 90 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEK--AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MNK++L+D + E+ SK + A+ L I E L + D V + GFG+F+ A R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP G+ ++I A F GKALK+AVK Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ A +A LS+ Q AALE+ L I ++ D V + GFG+F++ H+ RTG Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ ++IA F ++ Sbjct: 72 RNPQTGEPLEIAETWTAKFKPSPGFMGLIR 101 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L+ +I+E + + +++ L AI +S+ +G+ +++ GFGTFK+ R R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +++ + A VP F + K+AV Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + + LS+ ++ +ES L ++++L G+ V++ FGTF V ++ R G Sbjct: 6 LTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 103 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 50/84 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK+ L+ +AEK +S+ + L+ + I +++ GD++ L GFG+FK HR RTG Sbjct: 4 LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKA 84 RNP+TG+ + I A+ F + Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT L+ + EL++ QA +E+ + +T +L G+ VQL G G+F V HR TG Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG+ ++IAA N F +GK L+D + Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRDPFQ 90 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K+ +I+ + L++ + + +E+ ++ESL +G V+L GFG F++ + R G Sbjct: 4 LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + ++A V F +G+ + V Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQV 92 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%) Query: 1 MNKTQLID----VIAEKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 M K L++ IA+ A +SK +++ L AI E+L+E +++ GFGTFK+ Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R R RNP+TG ++++A VP F K L+ V Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M +++L+ +A + L + +A + + LA I ++L GD V++ GFG F R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+ + +A F GK ++ +K Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLK 149 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +N+ QL+ +A + L++ A AAL++ L I ++L +G V+L GFG+F+V R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 +P+TG+ + + AA F +AL++ ++ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERLR 97 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 40/89 (44%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I +SL + + VQ++ F TFKV+HR+ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+P+TG++IK A VP F +GK LK +V Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +A + L A + + + + + G+ + G G F V R G Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG ++I V F GK+L++AV Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 54/87 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLI ++ LSK A+ ++ I ++LK D V++ GFGT+KV R R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG++I+I A+ F+ KALK+ Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M KT+LID IA L+K +A+ AL TL+AI +++ +GD + L+GFGTF R ER Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ KDAV Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QLI IA + SKT + + S L I +++ G+ V LVGFG+F+ R R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++ + A+ +P F G ++ V Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKV 89 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 35/81 (43%), Positives = 52/81 (64%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KT+LI+ +AE+ ++K+Q + E L+ I SL++G+ V + GFGTFKV R+ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 63 PQTGKEIKIAAANVPAFVSGK 83 P+TG+EI+I F K Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 55/88 (62%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK+ L+ IA+K+ L+K QA+AA+ + E++K G+ ++L G + + RA RTGR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG++I I A+ +G LK AV Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K ++++I EK L+K ++ + + + + V++ GFG F+V R R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E I V F + KD V Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEV 89 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 101 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG-DAVQLVGFGTFKVNHRAERT 59 MN+++L+ +A++AE+++ A A L + + + + +G + V + GF TF+ HRA RT Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I+I A +G LK+A K Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEAAK 91 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 49/88 (55%), Positives = 66/88 (75%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK++LI+ IAEKA++SK A ALE+ + + +LK+GD+V LVGFGTF V RA R+GR Sbjct: 28 NKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSGR 87 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG IKI ++ VP F GKALKD++ Sbjct: 88 NPRTGAVIKIKSSKVPKFRPGKALKDSL 115 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ + + L K+Q L + TE L+ G+ V L G F+ R+ R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I + F ALK V Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRV 89 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +K LS+T++ A +E L IT+ L++G+ V+L FG+F V + +R GR Sbjct: 9 TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG E+ I+ V F LK + Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L++ I E+ L +T+ +E+ + E+L+E + V++ GFG F V + R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+T + ++I V F + LK +++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQ 90 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + ++ + + + S+ ++S L + ++L EG++++LV FGTF V +A RTG Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I I +F K L++ V Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQV 101 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K Q+++ I + L Q +E L I SL+ GD V + GFG F+V +++R G Sbjct: 3 LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I + A V F L+D + Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRI 91 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +S+ A + L+ ITE+L G+ V+L FG F++ + +R GR Sbjct: 73 TRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGR 132 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG I V F + K L D + Sbjct: 133 NPRTGVAAVIPPRRVLKFKASKVLLDRL 160 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT LI +++ ++LSK AK A+E L +T+ + G +++ GFG F HR R G Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+T + ++ VP F GK LK+ V Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIV 98 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 43/88 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K LI IA+ + K +E L + E L EG+ +++ GFGTF R R R Sbjct: 5 TKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPAR 64 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + I VP F +KD + Sbjct: 65 NPRTGETVLIDERLVPTFKFSNDIKDKI 92 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 35/86 (40%), Positives = 52/86 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +A K +LS +A AL+ + ITE++++G+ + LVGFG+F + R ER G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 NP TG + I A F G ++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++LI IA + L+K A ++ + + ++L +G+ V+L GFG F+ R R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++ + + F G ++ V Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A KA + + QA+ L++ +TE++ +GD V L G + + RA RTG Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ + I A G LK A + Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAAR 90 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L+ +A + ++ + + + + + L I+ SL++G V L FG+ + R ER R Sbjct: 122 TRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVAR 181 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+++ + A P F K LKD V+ Sbjct: 182 NPRTGEQLTVPATTFPTFSFSKVLKDKVR 210 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LID IA L+K +A+ AL TL+AI +++ GDA+ LVGFG+F R ER Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG++I + AA F G+ KDA Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDA 89 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K LI + +K L+K QA ++E+ L ++L G + L GFG F V ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG E+ + A V F L+D + Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKI 92 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 54/89 (60%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L+D +A+ L K KA +++ LA + E+L G VQL GFGTF+V R RTG Sbjct: 7 TKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTGV 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 P T ++IKI A PAF GKALKD VK Sbjct: 67 KPGTKEKIKIPATQYPAFKPGKALKDKVK 95 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+V+A++ LSK +A L + L + ++K+G AV L GFG+FK + RA R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG +IKIAA +P F G A K AV Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 50/88 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +K LS+T++ A +E L IT+ L+ G+ V+L FG+F V + +R GR Sbjct: 9 TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG E+ I+ V F LK + Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L +A+ + T+A+ ++ I ++L +G+ V+L GFG F + + R GR Sbjct: 4 TRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALK 86 NP+T ++I A V F + ++LK Sbjct: 64 NPKTKVPVEITARRVVTFHASQSLK 88 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 9/97 (9%) Query: 1 MNKTQLIDVIAEKAE---------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + + L+K +A+ AL L ++ ++K + + GFG+F+ Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 ++HR R GRNP+TG ++KI A N P F +G+ +K+A Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K I ++A+ A L+K A A ++ ++ IT+ L +GD++ +GFGTF RA R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R P TGK IK+ A V F GK LK+AV Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI+++ K +++ QA++ +E+ ++ ++L G+ +++ G G F V H G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I + F +GK L+D V Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 49/83 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +I+ + + ++KT+A+ A+E+ ++ ++L++GD ++L GFG F V R GRN Sbjct: 22 KLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIGRN 81 Query: 63 PQTGKEIKIAAANVPAFVSGKAL 85 P+TG E+ I F GK L Sbjct: 82 PRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 99.7 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 42/88 (47%), Positives = 58/88 (65%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +L+ IAEKA ++K QAK ALE+ + A+T+SLK G V+LVGFGTFK RA T R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + A+ F G+ LK ++ Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 53/85 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +A+KA+L++ KA E+ + I E +K+G+ + LVGFG+F V+ RA R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP++GK I I A+ F AL Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +A EL+K + AA+++ AA+TE L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTGKE KIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ +AE+ K A++ L +I E+L+E V++ GFG+F V R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TGK + I F K+LKD + Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 99.3 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 44/87 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L +A + LS++ A A+++ + + K V + GFGTF R R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP T + IKI AF ALKD Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 54/88 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+ + IA ++K +A+ + S + + ++ G +VQLVGFG F+V H+ R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP G+ I+I A NV F G+ LK+A Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNA 88 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + + +A+ +SK A+ + + L + GF TF+V + R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI I A F +GK D V Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKV 89 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 6/95 (6%) Query: 1 MNKTQLIDVIAEKA------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 MNK +L+ + +KA ++K + A + + + I E + EG+ V LVGFG+F+ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R ER GRNP+TG ++ I A VPAF +GK KD V Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 1 MNKTQLIDVIAEKAEL-----SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHR 55 M K +L + E L + + +TL IT L GD V+L GFG FKV R Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 56 AERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R GRNP+TG+ ++I A+ F GK LK+A+ Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEAL 94 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + K LS+T++ A +E L + +++ G+ V+L F TF+V + ER GR Sbjct: 7 TRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+E+ I V F + LK + Sbjct: 67 NPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 98.5 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVI-AEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ + A +LSK Q ++S + + +++ + GFGTF V RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG EI+IA F LK A+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 98.5 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MN++ LI +AE+ L + + L + ++ +G+ V++ GFG+F +N+R R Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKD 87 GRNP+TG +I++AA P F GKALK+ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKE 93 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 98.1 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 48/90 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+D IAE+ ++K +++ L + + E +K+ + L+GFGTF V + R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP T I+I A V F L +K Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLLK 90 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 97.8 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 48/88 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L +AE+ ++ A+ +++ I + G+ VQ++GFGTF RA R GR Sbjct: 3 NKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NPQTG I++ A P F +G+ + V Sbjct: 63 NPQTGAAIQVPAGTSPRFHAGQTFRTRV 90 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NKT LID +A++ +K L +TL AI+ +++ GD V L FGTF R R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP TG +KI AAN P+F + KD VK Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVK 112 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +++K + L+K Q + ++ + E+L G+ +++ GF FKV R ER Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK+ F KALK+A+ Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEAL 90 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++LI+ +A+ ++ A+ A+ ++ +L D +++ GFG+FKV + G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I++ + +P F GK LK+ V Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+++I+++ + + + + I +SL E + V + FG+F++ H+A R Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + N FV GK L D + Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLL 89 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L IA +S+ +AK LE LA+I ++L+EG+ + L FGTF++ + R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++A N P+F ALK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V+A + L+K A L+ I +++K+ GFGT+ V R R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + +K+ A+ F K LK+++ Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 97.0 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI + EK L A + S +I ++L GD V++ GFG+F V TG Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG ++++ +P F +G+ K+ Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKN 87 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 48/88 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ + IA + +L+K QAK ++S AI ++ G L GFG FKV R GR Sbjct: 32 TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGR 91 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG I IAA+ F KA+KD++ Sbjct: 92 NPSTGATIAIAASRKLTFTPAKAIKDSL 119 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 96.6 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K++LID + K L+K ++ + IT+ + +G AV +VGFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP TG IKIAA P F +GKA KD+V Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 96.2 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K + +V+ + +++ QA + I ++L G++V+L FG F + ++ R GR Sbjct: 4 TKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+ ++I+A V F SG LK A + Sbjct: 64 NPKTGEMVEISARRVVVFKSGPKLKLATQ 92 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 95.8 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 1 MNKTQLIDVIA---EKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHR 55 MN+ +L+ + E+ +++ + L+ L EG V L G + R Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 56 AERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 A R GRNP+TG+ I I A V F +GK L++A+ Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ + + K A+ + L +TE+LK+G++V L+GFGTFKV R+ RTG Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK IKI A VP F +GK LK+AV Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + + ++AEKA LSK + +++ L IT++LK GD V +GFGTF RA R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 + P T + +K+ A V F GK LK+AV Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 95.8 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 48/81 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT + IAEK + A+ + + ITESL G+AV+L GFGTF + H ER Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 61 RNPQTGKEIKIAAANVPAFVS 81 RNP+TG+ +++ A + P F + Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 95.4 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +LI ++AE+ ++ A +E + I +L+ G+++++ FG F+V + R G Sbjct: 3 LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I I V +F L+ A+ Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAI 91 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 95.4 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 58/87 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L+ IAE AEL+K QA+ L+ +A+ T +LK GD V ++GFG F R RTG Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNPQTGK ++IA F GKALKD Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKD 87 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 45/88 (51%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K LI IAE SK + + + + L I+ L + L FG F+++ RA R+G Sbjct: 19 TKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSGI 78 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+T + I+I A F K+LKD V Sbjct: 79 NPKTSEIIQIKATKSVKFKVSKSLKDQV 106 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + QLI +A L QA A + + L ITE+L EGD ++L GFG K R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++ A AF + + + + + Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERL 90 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 95.4 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 48/85 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ + E+ L K +A + + + + ++EG+++ + GFG+F ++ER Sbjct: 8 MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP+TG+E+ I F +G L Sbjct: 68 RNPKTGEEVMITPRVSVKFKAGSDL 92 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L + IA K + + K ++ L I L +G+ ++L FG F++ RA R R Sbjct: 5 TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + + NV F GK +++ V Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++L+ +I + A S ++ L++ + + E L G V L G G V RA R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I I A P F + KALKDAV Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAV 88 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN LID IA+ + +K A + + + I+ +LK G+ V++ G G F V+ RA R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+IAA F +GKALKDAV Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAV 89 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + EK L + +A +E L I +L+ G+ ++L FG+F + ++ER G Sbjct: 20 LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I V F + +KD + Sbjct: 80 RNPKTGEIVPITPRRVIVFKASNIMKDRI 108 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 94.7 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A+K +++ +A +++ TE+L+ ++ L+GFGT + ER G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP+ G I A F GK L Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLL 85 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESL-KEGDAVQLVGFGTFKVNHRAERT 59 MNK++LID +A A ++K AKAALES ++ +T +L ++ V LVGFGTF V RA R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 G NP T K IKIAA V F +G L +V Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 1 MNKTQLIDVIAEKA---------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + E +K A+ AL L +I + K +V + GFG+F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 + R R GRNP+TG ++ I A P F +G LK+A Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEA 97 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ +A + +K A AL + + L G+ + + G GTF + ++A R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA F + KAL DAV Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAV 89 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ L +A + ++ A+ ++ L A+ E L GD V++ FG +V+ +A R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG + I A F G+ALK+A K Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNAQK 91 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + L D +A +K A+ A++ AAI ++ +G+ V L GFG FKV R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ IKIAA+ +F KA+KD + Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRL 90 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGD---AVQLVGFGTFKVNHRAE 57 MNK + + +AEK ++K +A L + + I ++ +E + V L GFGTF +R Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALK 86 R G+NP+TGK I I A VP F K LK Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ IA KA +S+ L + T+SLK GD V L G G + R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ ++I A VP + L DA+ Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDAL 89 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L ++ + +SK A A++ ++++L V + FG F++ R R G Sbjct: 6 NKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMGI 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDA 88 NP T + + I A +P F + LK+ Sbjct: 66 NPVTKERMMIQATKLPKFRPSQTLKNK 92 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 45/85 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI IA K+ L K Q +E + AI E+L +G++V LVGFGTF+V R R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 N TG+ + I F G + Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 1 MNKTQLIDVIAEKA------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 M K L+ + E++ L + +A L++ + L G V L G G K Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RA R GRNP+TG+ + I A V F + L ++ Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKLDRDIR 96 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++D IA + ++ + K +E + AI+ + EG+ ++L GFG FK R ER R Sbjct: 9 TKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRTR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + I A P F K L + + Sbjct: 69 NPKTGELVNIPAKVRPVFEPSKDLIEKI 96 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 93.1 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + KT++ + + ++S+ + +E L I E+L++G+ V + GFG F VN + R G Sbjct: 3 LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP T +E+ + A V F L++ + Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLI 91 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 52/87 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL+D++A+K L+K Q++ A+ + L + +++K+G +V L G GT V A RTG Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P T + I+I A AF LK ++ Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 93.1 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+ LI IA K LS Q ++ L + + L + V L FG F V G Sbjct: 1 MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+PQTG+ +K+ NVP F S L+ + Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELRKRL 89 >UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PUX5_9BACT Length = 94 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDA-VQLVGFGTFKVNHRAERT 59 MNKTQLI +A K E+SK A + + L I ++L EGD V + FG F + AER Sbjct: 1 MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKAL 85 G NP TG+ I IAA AF + L Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 92.7 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MN++QLI+ I E A L+KT + L + E+L GD V + G V RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 TGRNPQTG+ ++I A V KALK+ V+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQ 92 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ IAE+AE++K + A+ + E++ GD++ + GFGT R + Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN G + + VP F KA K V Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQV 89 >UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAF Length = 90 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V++EK + K + + L++ ITE LK+G+ L GTFKV RAE+ G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG++I I A F + K L +K Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNLSTLIK 90 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + K LS+T++ +E+ + I ++ G+ V+L F TF++ + ER GR Sbjct: 7 TRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+E+ I+ V F + LK + Sbjct: 67 NPKTGEEVPISPRRVMTFKASNVLKQRI 94 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R GR Sbjct: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 N QT +E+KI V F + LK + Sbjct: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi RepID=Q5LM20_SILPO Length = 91 Score = 92.4 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KTQL+ +AE K A AAL++ A IT + G AV L G G R ER Sbjct: 1 MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ AA V KALKD+V Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSV 89 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 92.4 bits (229), Expect = 5e-18, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 1 MNKTQLIDVIAEKAE---LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 + K + + + E ++K A+ A ++ + + + + G V+L G G F V RA Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RTGRNPQTG+ I I A F++ K L D + Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGL 93 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + LI IAEK A +S + ++ + ++ + EG+++++ FG F+++HR R Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+++ + F GK LK +K Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMK 91 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 47/86 (54%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++D I EK + ++ + K +ES L + +++K+ A+ + GFG F+ + R G Sbjct: 6 LTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 RNPQT + I + V F + + Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFR 91 >UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria RepID=B0SI26_LEPBA Length = 101 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++++ +AE ++K A L+S + + K+ A + G G +R +R G Sbjct: 8 MKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRKG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ I I A V F K KDAV Sbjct: 68 RNPATGEAIVIPAKTVVKFTLSKTCKDAV 96 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 91.2 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 44/86 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I EK E ++ + K ++ L + +S+K +++ + GFG F+ + R G Sbjct: 6 LTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 RNPQT I + V F + + Sbjct: 66 RNPQTNASIMLPPRKVVVFRLSRKFR 91 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 91.2 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 7/95 (7%) Query: 2 NKTQLIDVIAEKAE-------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 NK +L I+EK+ L+ ++K +++ A+ITE L + +Q++ FGTF+ Sbjct: 3 NKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKKT 62 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RA R G NPQ G+ I+I VP F +GK LK+AV Sbjct: 63 RASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 47/89 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + L ++E E+ K QA+A + + + LK+G +++ G G +V R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EIKI A+ AF K LK+ V Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K + +D A+ +K +A+ + L + ESL +GD+VQ VG+GTF+V RA RTG Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 61 RNPQTGKEIKIAA 73 NPQT +EI+I Sbjct: 61 INPQTKEEIQIPE 73 >UniRef50_A6L5E8 DNA-binding protein HU n=9 Tax=Bacteroides RepID=A6L5E8_BACV8 Length = 90 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + I ++ K + + S + +T+ L++G+ + + GFGTF+V + ER Sbjct: 1 MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERIS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP T + + I V + LK+ K Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEKFK 90 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L I E + A ++ + A+ + G V L GFGTF+ RA RTG Sbjct: 1 MNKADL-ARILEPIVGGQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ ++I P F + V Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 91.2 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +++D + + + QA +A+E+ + I ++ +GD V + GFGTF+ R RTG Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +KI +VP F G A K+ V Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 1 MNKTQLIDVI--AEKAELSKTQAKAALESTLAAITESLKEGD---AVQLVGFGTFKVNHR 55 M K ++++ I + E+SK + + I + L G+ VQ+ GFGTF V R Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 56 AERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 A + GRNP+T +E I +F +GK LK+++ Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94 >UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT Length = 97 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + I +A + ++ +++ +++ + + +S + GD V ++GFGTF+V R ER Sbjct: 1 MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP TG + + V F +K V+ Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHVR 90 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 7/83 (8%) Query: 15 ELSKTQAKAALESTLAAITESLKEGDAVQL-------VGFGTFKVNHRAERTGRNPQTGK 67 LS+ AK ALE+ + A T++LK+GD + L GFGTF ++ R+ RTGRNPQTGK Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183 Query: 68 EIKIAAANVPAFVSGKALKDAVK 90 EI+IAA NV F +G L AVK Sbjct: 184 EIQIAAKNVVKFKAGAELSKAVK 206 Score = 83.1 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 48/64 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A ++ LSK+ AK AL++ A T++L++GD+ LVGFG+F ++ R+ RTG Sbjct: 1 MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60 Query: 61 RNPQ 64 RNP Sbjct: 61 RNPS 64 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ I +SK A+ + I++ L EG V + GFG F ++ R+ R G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG++I I A+ F K LK+++ Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89 >UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0E2_PHYMT Length = 96 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 52/87 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + I +++K E ++ + K + + + I +L + + + + GFGTF V R+ER G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 ++P+T + IKI A +P+F K KD Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKD 87 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 45/86 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I E+ + S+ + K +E L + +S+K+ A+ + GFG F+ + R G Sbjct: 6 LTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 RNPQT + I + V F + + Sbjct: 66 RNPQTEEAITLPGRTVVVFRLSRRFR 91 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L I EK S+ A ++ + +L + ++LV FGTF V ++ R G Sbjct: 6 LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++I+ ++ +F K++++ + Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERI 94 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + + I + LS+T++ +++ L I +L G+ V L F F V ++ R G Sbjct: 6 LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++ +IAA V +F + A+K ++ Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQIQ 95 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN++QLI+++A+K L+K K ++ I + +KEG + L GFG+FK ++ R Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN + G ++++ + F L + + Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQM 89 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 90.4 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 48/85 (56%) Query: 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQ 64 ++ D IA + L K QAK +ES ITE+ G + FG FK+ ER GRNP Sbjct: 6 EIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGRNPA 65 Query: 65 TGKEIKIAAANVPAFVSGKALKDAV 89 TG IKIAA+ F GKA+KDA+ Sbjct: 66 TGATIKIAASKKLTFTPGKAVKDAL 90 >UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis RepID=Q02ZW9_LACLS Length = 120 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +LID +A++ ELSK A A+ + + AIT + EG V + FGTF+V A R + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 + ++I + N+P F +GKALK Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 2 NKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + L+D I LS+ Q + E L I+E+L G+ V+L FG F V + ER G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E+ I V F + L +V Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASV 109 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K ++ + + +AK AL++ AIT + + V+L GFG F + R+ R Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GR+ +TG+ I I A V F GKAL+ AV Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 52/88 (59%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 QL +AE LS+ QA L +++I + LK+G +++ G GT +V RA RTGR Sbjct: 39 TLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGR 98 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+ I+I A+ AF + K L +++ Sbjct: 99 NPATGEAIEIKASKKVAFRAAKDLSESI 126 >UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum RepID=Q2WAF5_MAGSA Length = 89 Score = 90.4 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K+ + I + A + QA AA+E+ LA I E +K L+GFG+F + R R G Sbjct: 1 MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TGK I IAA+ F + ALK ++ Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAK---AALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 M + ++ I EK E S+ AK + L I+ +L+ G+ V++ GFGTF V + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKAL 85 R GRNP+TG+ + I A + F ++L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K QLI IAE + KT A++ALE + + L++G + L G KV R RTG Sbjct: 3 LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I+IAA V FV K L D++ Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSI 91 >UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZX6_XANC5 Length = 99 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ L IA + +++ +A + +++ + L E V + FG F++ H+ R Sbjct: 1 MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG+ +++ F + LK Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRR 88 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK +LI+ +A + + A AAL++ L + ++ +G+ V + GFG F+ R RT R Sbjct: 19 NKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTAR 77 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ +K+ +VP F G K+ V Sbjct: 78 NPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ L++ + E+ L K L T A+T++L +GD V++ G G+FKV + R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG +++ V F GK LK + Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI+ I + SK ++ ++ L I ++LK ++L FGTF + + R G Sbjct: 8 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T ++ I+ +V F + K KD V Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLV 96 >UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria RepID=Q3SRD9_NITWN Length = 99 Score = 90.0 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 54/88 (61%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 L +AE ELSK A+A L + IT+ LK+GD +++VG G +V RA R GR Sbjct: 12 TLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGR 71 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+EI+I A+ AF + K LK+A+ Sbjct: 72 NPATGEEIQIKASKKVAFRAAKELKEAI 99 >UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN7_9SPIO Length = 112 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG- 60 KT ++D I +K++ + + A + ++L+ G+ +++ GFGTF V R R G Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ + A +V F GK L AV+ Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKILSAAVR 100 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +A + K A A+E+ + IT ++ G+ V + GFG F+ RA R Sbjct: 1 MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ +++ +VP F +G LK V Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVV 88 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 KT+L++ + E A+L ++ A AA+ + +A I+ +L +G VQLVGFGTF+V R+ RTGR Sbjct: 22 TKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTGR 81 Query: 62 NPQTG-KEIKIAAANVPAFVSGKALKDAV 89 NPQ K + I A VP F +GK L+ AV Sbjct: 82 NPQDPTKTVHIPAKKVPVFKAGKLLRSAV 110 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 1 MNKTQLIDVIAEKAE---LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 MN+T +++ L + + AL+ + IT S+ G++V+L GFGTF+V R + Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKAL 85 R GRNP+TG+ + I + V F + Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88 >UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular organisms RepID=C7M6F9_CAPOD Length = 104 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I++K L K + +E+ + + +L+ G V L GFG+F + RAE+TG Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RN +KI A N+PAF K + VK Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVEGVK 90 >UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=A7V341_BACUN Length = 404 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N LID +AE+ +SK A + ++ I ESL++ V++ G GTFK+ R Sbjct: 5 LNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F ALKD + Sbjct: 65 VNVNTGERFEIQGHTKVSFTPEPALKDII 93 >UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius RepID=Q2NQ11_SODGM Length = 78 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 49/66 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ LI+ + EK+++++ +A + + +AAITE+L G++V L GFG F V RAER+G Sbjct: 1 MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60 Query: 61 RNPQTG 66 RNPQTG Sbjct: 61 RNPQTG 66 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L++ I+ + ++ + ++ + I+ +L EGD V + FGTF+V + G Sbjct: 5 LTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64 Query: 61 RNPQT-GKEIKIAAANVPAFVSGKALKDAV 89 RNP+ +++ I A +V F GK LKD V Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID=C6ZBE9_9BACE Length = 90 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI ++AEKA + ++S ++++L+E D V + FGTFK + R Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP TG+ +++ V F K + Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSKNI 84 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ IA++ K +E+ + ++ ++ EG+ V L GFG+F + HRAE+ Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN I I A ++PAF KA D V Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMV 89 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 42/87 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K + + + E + QA+ +++ + ++ ++L GFG F V ++ R GR Sbjct: 4 TKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRPGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDA 88 NP+TG+ +I A V F + L+ Sbjct: 64 NPKTGQPYEIKARRVVTFSASALLRAK 90 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N + LI IAE+ S+ KA L + I ++ + G + G G FK + RA R G Sbjct: 4 LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG EI+IAA++ +F KA KD + Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRL 92 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL++++A++ L+K Q++ A+ S L + +L+ G +V L G GT V A RTG Sbjct: 36 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 P T ++I+I A AF LK Sbjct: 96 PGTSEKIQIPAGKKVAFKVASTLK 119 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + ++D + + L++ + LE L + E L ++V+L FG F V + R GR Sbjct: 7 TRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARVGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TGKE I A V F ++ V+ Sbjct: 67 NPKTGKEAPITARRVVTFKPSPLMRRRVE 95 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI V+AE+ ++Q + + I E+L +G+ V + GFGTF+V+ RA R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A P+F G LK AV Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ ++D + ++ +LS+ ++S ++ +T +L+ G+ V+L FG F+ R G+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 + +TG+ + I + V F K LK AV+ Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVR 95 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 88.5 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L I+ K A +ES + + ESL++G+ V L GFG+F V RAE+T Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN I I A N+PAF K L V Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLV 89 >UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZB4_PELTS Length = 89 Score = 88.1 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L+ ++A + +++ QAKA L++ + ++ G V+ G GTF+ R R Sbjct: 1 MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN QTG+ + + A + +F + + + V Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89 >UniRef50_C4K783 Integration host factor (IHF), DNA-binding protein, alpha subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K783_HAMD5 Length = 107 Score = 88.1 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESL--KEGDAVQLVGFGTFKVNHRAERT 59 K ++D ++EK L ++K LE I L +E ++ GFG F + + R Sbjct: 4 TKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKKARP 63 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+++ I V F +G LK ++ Sbjct: 64 GRNPKTGEDVLIKKRRVVTFHAGLKLKTLIE 94 >UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO Length = 92 Score = 88.1 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELS-KTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K + ++ EK + +T+A+ ++ + ++L +G+ + ++ +G +V RA R Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+E+ I F GKA + + Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKL 90 >UniRef50_C1EA69 Predicted protein n=2 Tax=Micromonas RepID=C1EA69_9CHLO Length = 118 Score = 87.7 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 55/88 (62%), Gaps = 1/88 (1%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +D++A +A +SK QA+ AL+S LA I ++ G+ V GFG+F+ RA RTG N Sbjct: 29 KAWAVDLMASEAGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVN 88 Query: 63 PQTG-KEIKIAAANVPAFVSGKALKDAV 89 PQ ++IKI A+ P F +G A K AV Sbjct: 89 PQNPTQKIKIPASMAPKFKAGSAFKSAV 116 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 117 1e-25 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 116 2e-25 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 116 2e-25 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 116 3e-25 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 114 7e-25 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 114 9e-25 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 112 3e-24 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 110 9e-24 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 110 2e-23 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 109 2e-23 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 109 2e-23 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 109 3e-23 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 109 3e-23 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 109 3e-23 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 109 4e-23 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 109 4e-23 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 109 4e-23 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 108 7e-23 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 107 8e-23 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 107 9e-23 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 107 1e-22 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 106 2e-22 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 106 2e-22 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 106 2e-22 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 106 2e-22 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 106 3e-22 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 106 3e-22 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 105 4e-22 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 105 5e-22 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 105 6e-22 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 104 7e-22 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 104 8e-22 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 104 9e-22 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 104 9e-22 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 104 1e-21 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 104 1e-21 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 104 1e-21 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 104 1e-21 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 103 2e-21 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 103 2e-21 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 102 2e-21 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 102 3e-21 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 102 3e-21 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 102 4e-21 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 102 5e-21 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 102 5e-21 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 101 6e-21 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 101 9e-21 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 100 1e-20 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 100 1e-20 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 100 1e-20 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 100 1e-20 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 100 2e-20 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 100 2e-20 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 100 2e-20 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 100 2e-20 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 100 2e-20 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 100 2e-20 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 100 2e-20 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 100 2e-20 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 100 3e-20 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 100 3e-20 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 99 3e-20 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 99 3e-20 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 99 3e-20 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 99 4e-20 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 99 4e-20 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 99 4e-20 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 99 4e-20 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 99 4e-20 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 99 5e-20 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 99 5e-20 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 98 6e-20 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 98 7e-20 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 98 7e-20 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 98 9e-20 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 97 1e-19 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 97 1e-19 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 97 1e-19 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 97 1e-19 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 97 1e-19 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 97 1e-19 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 97 1e-19 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 97 2e-19 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 97 2e-19 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 97 2e-19 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 97 2e-19 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 97 2e-19 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 97 2e-19 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 97 2e-19 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 96 3e-19 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 96 3e-19 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 96 3e-19 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 96 3e-19 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 96 3e-19 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 96 3e-19 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 96 3e-19 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 96 4e-19 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 96 4e-19 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 96 5e-19 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 96 5e-19 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 96 5e-19 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 95 5e-19 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 95 6e-19 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 95 6e-19 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 95 7e-19 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 94 9e-19 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 94 1e-18 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 94 1e-18 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 94 1e-18 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 94 1e-18 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 94 1e-18 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 94 1e-18 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 94 1e-18 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 94 1e-18 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 94 2e-18 UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 94 2e-18 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 93 2e-18 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 93 2e-18 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 93 2e-18 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 93 2e-18 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 93 2e-18 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 93 3e-18 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 93 3e-18 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 92 3e-18 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 92 3e-18 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 92 4e-18 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 92 4e-18 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 92 4e-18 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 92 4e-18 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 92 5e-18 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 92 5e-18 UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero... 92 5e-18 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 92 5e-18 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 92 6e-18 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 91 7e-18 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 91 7e-18 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 91 9e-18 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 91 1e-17 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 91 1e-17 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 90 2e-17 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 90 2e-17 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 90 2e-17 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 90 2e-17 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 90 2e-17 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 90 2e-17 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 90 2e-17 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 90 2e-17 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 90 3e-17 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 90 3e-17 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 90 3e-17 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 89 3e-17 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 89 3e-17 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 89 3e-17 UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero... 89 3e-17 UniRef50_C9LHL9 Putative integration host factor IHF alpha subun... 89 3e-17 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 89 4e-17 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 89 4e-17 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 89 4e-17 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 89 4e-17 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 89 4e-17 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 89 4e-17 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 89 4e-17 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 89 5e-17 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 89 5e-17 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 89 5e-17 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 89 6e-17 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 89 6e-17 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 88 6e-17 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 88 7e-17 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 88 7e-17 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 88 8e-17 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 88 8e-17 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 88 8e-17 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 88 9e-17 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 88 1e-16 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 87 1e-16 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 87 1e-16 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 87 1e-16 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 87 1e-16 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 87 2e-16 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 87 2e-16 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 87 2e-16 UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 87 2e-16 UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi... 87 2e-16 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 87 2e-16 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 87 2e-16 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 87 2e-16 UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta... 87 2e-16 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 87 2e-16 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 87 2e-16 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 86 3e-16 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 86 3e-16 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 86 3e-16 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 86 4e-16 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 86 4e-16 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 86 4e-16 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 86 4e-16 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 86 5e-16 UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T... 86 5e-16 UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri... 86 5e-16 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 85 6e-16 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 85 6e-16 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 85 6e-16 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 85 6e-16 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 85 6e-16 UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergen... 85 7e-16 UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero... 85 7e-16 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 85 7e-16 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 85 8e-16 UniRef50_A6L5E9 Putative integration host factor IHF alpha subun... 85 9e-16 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 85 9e-16 UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus... 84 1e-15 UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero... 84 1e-15 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 84 1e-15 UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae R... 84 1e-15 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 84 1e-15 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 84 1e-15 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 84 2e-15 UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=M... 84 2e-15 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 84 2e-15 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 84 2e-15 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 84 2e-15 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 84 2e-15 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 84 2e-15 UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT 84 2e-15 UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=... 83 2e-15 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 83 2e-15 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 83 2e-15 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 83 2e-15 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 83 2e-15 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 83 3e-15 UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=... 83 3e-15 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 83 3e-15 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 83 3e-15 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 83 3e-15 UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 83 3e-15 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 83 3e-15 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 83 3e-15 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 82 3e-15 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 82 4e-15 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 82 4e-15 UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID... 82 4e-15 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 82 4e-15 UniRef50_B1H0L9 DNA-binding protein HU-1 n=1 Tax=uncultured Term... 82 4e-15 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 82 4e-15 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 82 4e-15 Sequences not found previously or not previously below threshold: >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+AELSK A A+++ +IT +LKEG VQLVGFG+F+V R+ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A PAF GK LKDAV Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 57/89 (64%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L+ +A A LSK A A++ AIT +LK GD V+LVGFGTF V RA GR Sbjct: 48 NKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEGR 107 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG++I I A+ P F +GK LKD ++ Sbjct: 108 NPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 57/90 (63%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LID +A A LSK +A A+++ + ITE+LKEGD+V LVGFGTF+V RAER G Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA+N P+F GKALKDAVK Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVK 90 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 67/89 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ +AE +ELSK A A++S I ++LK GD +QL+GFG F+V R+ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI+I A+ VPAF GKALKDAV Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 51/90 (56%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AE+ ++SK A + + I ESL +GD+VQL+GFG F+V RA R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI IAA PAF +GK LKDAVK Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K+ A +A+++ + LK ++L GFG+F V+HRA G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAV 89 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 53/90 (58%), Positives = 70/90 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI+ +AE+A+L+K +A +A+++ +I SL +G+ VQL+GFG F+V RA R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI I A+ VPAF +GKALKDAVK Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 110 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ IA ++ L+ + A++ L ++E+L G +++ GFG+F ++HR R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A VP F GK L++ V Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERV 90 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A + +L+ A+++ L A+T++L G +++ GFG+F ++ R+ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK L++ V Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ +AE + LSK A +++T AAIT +LK GD V+LVGFG+F V RA + G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG IKIAA+ P F +GK LKDAV Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAV 115 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ +++ + LSK +A L+ LA I +SLK+G+ V LVGFGTF+ + RTG Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ ++I A VP F +GK+L++A+ Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 45/90 (50%), Positives = 64/90 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+D IA + L+K A LE+ +A +T+ LK+GD V + GFG+F +R+ RTG Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGK I+I A+ V F +GK LK+AV+ Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQ 98 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ L+ VI++ + L+K + AL++ AIT +L GD V + GFG+F V RA RTG Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I+I A+ VPAF +GK LK++V Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESV 89 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A+ A+ + +I ++L EGD VQ++GFGTF+V R+ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A+ PAF +GKALKDAV Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAV 89 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI IA++AELSK A + + ++ +T+ LK+G+ V LVGFGTF AER G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + IAA P F SGKALKDAV Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 50/89 (56%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK L+K A+ AL + L +I E+L GD VQLVGFGTF+ RA R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+EI IAA VP F +GK L+++V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL+ + A+TE+LK+GD V LVGFG+F V RAER G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI I +A P F GKALKDA+ Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 73/90 (81%), Positives = 80/90 (88%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+D IA KA+LSK QAK ALE + IT+SLKEGDAVQLVGFGTFKVNHRA RTG Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTGKEI+IAAANVP+FV+GKALKDAVK Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 56/90 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +L +++ E+ L+K +AK +++ I E+L GD+V+L GFG F+V + R G Sbjct: 12 LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I IAA V F + + LK V+ Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSTVE 101 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 71/90 (78%), Positives = 78/90 (86%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LID IA AEL+K QAKAALE+TL AIT SLKEG+ VQL+GFGTFKVN RA RTG Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG EI+IAA+ VPAFVSGKALKDA+K Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L++ +A + +L A ++++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+ + + VP F +GK L++ V Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERV 90 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+++A K + L+ + ++++ L ++++L GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L++ V Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERV 90 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M +++LI+ I E+ + + + +A + + ++++L G ++L GFG F V R RT Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A +F +GK L++ + Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERL 90 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ ++A + L + + + L IT++L G+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG + + VP F +GK L++ + Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERL 90 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A+L K A AL++ + ++T +LK GD+V LVGFGTF V R R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK ++IAAA P F +GKALK+AV Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 47/89 (52%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A A +SK+ A +++ L AIT+++ +AVQL+GFG F R+ RTG Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI IAAAN F +GKA KDAV Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ IAE L + + + + L I +L GD V+L GFG F V HR R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +VP F +GK +++ + Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERL 90 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 49/90 (54%), Positives = 61/90 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +AEK +SK + ++E I+E+LK G+ V + GFGTF+V RA R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+EI I A PAF KALKDAVK Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +I+ + EK SK ++ +E + E+L+ GD +++ GFG F+V + R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGKEI+I+A V F + LK A+ Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSAL 89 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + + + + +SK AK +E+ I +L+ G+ V++ GFG F++ + ER G Sbjct: 3 LTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I A V F G+ LK V+ Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+KT+LI +AEK LSK Q + + L+ I + L G V+LVGFGTF +RA R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ + I +V F G LK V+ Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 54/89 (60%), Positives = 69/89 (77%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI+ IA A+++K +A AL+ L+AI ++L + D+V LVGFGTFKV RA RTG Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG EIKI AA VP F +GKALKDAV Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ I L S + A+++ L +++ L GD +++ GFG+F +++RA R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F GK L+D V Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A + +L A A+++ L A++++L +G +++ GFG+F +N R R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++++ +VP F GK L++ V Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERV 90 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L IAEKA+L+K QA L + L IT +L D+V LVGFGTF HR RTG Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GKAL+DAV Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAV 89 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 63/91 (69%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +L++ I KA L +K QA++AL++T+A + +++ G++V GFG+FKV RA R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+EI I A V F GK LKDAVK Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A A+++ L A++++L G +++ GFG+F +N R R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G ++ + VP F GK L++ V Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV 90 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 52/89 (58%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID IA A LSK A AL +T AIT ++ D VQL GFG+F V +RA RTG Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I A+ V AF +GKALK+AV Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QL+D IA++ E ++ A A+++ AI E++ G+ V + GFG F+ RA RTG Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ + +AA+ VP F G K +V Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 55/90 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K + + + ++ L+K +AK +E I +L++G+AV+L GFG F++ + ER G Sbjct: 3 LTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+EI I A V F G+ LK V+ Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 102 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 51/90 (56%), Positives = 62/90 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLID IAE A ++K +A L L ITESLK+ ++VQLVGFGTF V HR R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I++ A VP+ KALKDA+K Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALK 90 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A+ L + + + + I+ +L GD V+L GFG F V R RT Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +VP F +GK L++ + Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERL 90 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI+ ++ E+++ +++ +E+ +I SL+ GD +++ GFG+F+ R R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG +++ A +P F K LKD V Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVV 89 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+LI+ +A A A+ +++ I + + G+ V + GFGTF R RT Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++ P F +G+ KD V Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ L IA+++ S Q L++ +T+++ GD VQ++GFGTF + R R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+EI++ A F +G L+ AV Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAV 89 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ LI+ +A + + +AA++ L + +L+ GD +++ GFG+F +++RA R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++++ VP F GK L++ V Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERV 90 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LID +A + SK Q L++ L I +++ +GD+VQL+GFG+F RA RTG Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ IKI AA F +GKA KDAV Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAV 89 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI I+ + LSKT ++ AL + ++ +TE L +GD++ L GF + V RTG Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ I+IAA+ V +F +G LK+A+ Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +A E L + + + I+ +L++GD V+L GFGTF V +R RT Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ +++ VP F +GK +++ + Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERL 90 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +A E L++ + + L + +L++G V+L GFG V R RT Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + A +VP F SGK L+ + Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARL 90 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +NK + ++ I + ++K + AL L + ++++ G + +VGFG+F V RA R Sbjct: 34 LNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARD 93 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 G NP+TG +I I + F GK LKDA Sbjct: 94 GHNPKTGAKIIIPESYQVVFKPGKTLKDA 122 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI ++ + S+ + ++ + I+E L G+ L G G F + RA RTG Sbjct: 3 LTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA+ F + K LKD V Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQV 91 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++ + + E L+K AK +ES I E+L+ G+ V+L GFG F + + +R G Sbjct: 3 LTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++I I+A V F G+ LK V+ Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVE 92 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M +++L+ +A + L + +A + + LA I ++L GD V++ GFG F R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG+ + +A F GK ++ +K Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLK 149 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 51/89 (57%), Positives = 65/89 (73%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +AE EL+K + AA+++ ++I L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTG EIKIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIA-EKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +A +++LS + ++A++ L + +L+ GD +++ GFG+F +++RA RT Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG +++ VP F GK L++ V Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 41/90 (45%), Positives = 57/90 (63%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L++ + KA LS+ A+ A+ + IT L E V LVGFG+F V RA R+G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 R+PQ+G+ I I A + P F KALK+ V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQ 90 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LID IA+ L+K + +A +E + A+ ++KEG ++L FG F+V HRA RTG Sbjct: 3 MTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + ++I P F L +AV Sbjct: 63 RNPQTNEPVEIEDRYKPVFRPSDKLSEAV 91 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+ +IA + L + + + IT +L EG+ V+L GFG F V +R R+ Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + VP F +GK L+D + Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRL 90 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 54/90 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L +++ E+ L+K ++K +++ I++ L EG V++ GFG F++ +A R G Sbjct: 13 LTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+ I I + V F + LK+ ++ Sbjct: 73 RNPRTGEAIPIESRRVVTFHASHKLKEQIQ 102 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 99.8 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ + + L K+Q L + TE L+ G+ V L G F+ R+ R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I + F ALK V Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRV 89 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 99.8 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ +AEK+EL+K A+ AL S + ++ E+L +GD VQLVGFGTF+V R R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ ++ I+I A+ P F +GK LK+ + Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI + ++ LSK+QA +E L+ +SL+EG+ + L GFG F V + R G Sbjct: 3 LTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+E+ +A V F L+ V Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRV 91 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%) Query: 1 MNKTQLID----VIAEKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 M K L++ IA+ A +SK +++ L AI E+L+E +++ GFGTFK+ Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R R RNP+TG ++++A VP F K L+ V Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ L + + + + IT++L GD V+L GFG F V R R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG+ + + +P F +GK L++ + Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERL 90 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 41/90 (45%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ LID IAE E SK L+S + + + +G AV+L GFGTF+ A RTG Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG IKI + + P F G KD VK Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVK 90 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LID +AEK L+ +A+ + L ++++L EG +++ GFG+ V G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EI++ +P F GK L++ + Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I+++ L++ + K ++ T AI E+L ++L FG F+V RA R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG ++ + V F GK +++ V+ Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVR 90 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI +AE+ +L A+ ++ L A+ +SL G+ +++ GFG+F +N+R R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP++G+++ + VP F +GK +++ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELI 90 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 40/89 (44%), Positives = 60/89 (67%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN +L ++A+K +S+ A A+ +TL AI+ESL + V L+GFGTF V RA R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG++I I+A+ F +G++L++ V Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKV 89 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 53/89 (59%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++ I+E+ L++ + K ++ T AI ++L E ++L FG F+V RA R R Sbjct: 21 TKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKAR 80 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+++ + + V F GK +++ V+ Sbjct: 81 NPRTGEKVYVPSKFVVTFKPGKEMEERVR 109 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 48/89 (53%), Positives = 62/89 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL+ +A+K+EL+K A+AAL S IT+SL EGD VQ+ GFGTF +++ RTG Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+I AN F + KALKD + Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 63/89 (70%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +AEK++L+K A+ AL++ + ++ E+L++G+ VQLVGFGTF+ RA R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I I A VP F +GK KD V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 61/89 (68%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + ++ +A++ ++S+ QA AL + L I E + G+ V GFG+F+V+ RAERTG Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG IKIAA+ VP F +G LK A+ Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAI 89 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++L+D +A K L + A+ A+++ L IT +L+ G+ V + FGTF V HR R+ Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP G + I VP F +GK ++D + Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRL 90 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 52/89 (58%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++ I+E+ L++ + K ++ T AI E+L E ++L FG F+V RA R R Sbjct: 58 TKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKAR 117 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+ + +A V F GK +++ V+ Sbjct: 118 NPRTGQPVYVAEKFVVTFKPGKEMEEKVR 146 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 50/85 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +AEKA L+K A+ A+ + +TE + G+ + L+GFGTF V+ RA R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP+T K I I A V F G L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 66/89 (74%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI +AEK++L+K A+ AL++ + ++ E+L+ G+ VQLVGFGTF+ RAER G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +EI I A+ P F +GK LK+ V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 57/89 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+ +AEKA L+K A +A+++ + LK G ++L GFG+F V+ R G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG E+ I A NVP F +GK LKDAV Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAV 89 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ + EK +S + A++ L ++++L+ GD +++ GFG+F ++ R R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP+TG ++K+ A VP F +GK L++ V Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M ++ LI IAEK +++ +AK + TL +I ++L GD VQ VGFG+F+V RA RT Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQ G EI I + F +GK LKD V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 +N+ QL+ +A + L++ A AAL++ L I ++L +G V+L GFG+F+V R RT Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 +P+TG+ + + AA F +AL++ ++ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERLR 97 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 97.1 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 59/85 (69%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ +AEKAE+++ A L++ + +I ++L GD VQ++GFG+F+V R ER Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 +P TGKEI + A VPAF GK+L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L VIAEKA+L+K +A L + L +IT +L + V LVGFGTF+ HR RTG Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDKD-TVTLVGFGTFEKRHRGARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NPQTG+ +KI A+N AF GK LKD+V Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSV 88 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 53/88 (60%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L++ I+ L+K + +A ++ +I +SLK G +++ GFG+F + ++ ER R Sbjct: 6 TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+++ + A NVP F K K AV Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAV 93 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K +LI+ IA L+K +A+ AL TL AI +++ +GDA+ LVGFGTF RAER Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ ++AV Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAV 111 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 50/84 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK+ L+ +AEK +S+ + L+ + I +++ GD++ L GFG+FK HR RTG Sbjct: 4 LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKA 84 RNP+TG+ + I A+ F + Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 52/90 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ A +A LS+ Q AALE+ L I ++ D V + GFG+F++ H+ RTG Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ ++IA F ++ Sbjct: 72 RNPQTGEPLEIAETWTAKFKPSPGFMGLIR 101 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + I +AE+ +SK +A+ +++ L ++E L+ G+ V L GFGTF+V R R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+T + + I A P F + +LK V+ Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVR 90 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 55/90 (61%), Positives = 71/90 (78%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++LI++I++K+ LSK Q K LE TL AI +SLK+G++VQLVGFGTFKVN+RA R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I I+A P F+SGK K A+K Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEK--AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MNK++L+D + E+ SK + A+ L I E L + D V + GFG+F+ A R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP G+ ++I A F GKALK+AVK Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +LID IA + +LSK LE L I +++K+GD VQLVGFGTFK RA RTG Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TG+ +KI A VP FV+G K V Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI+++ K +++ QA++ +E+ ++ ++L G+ +++ G G F V H G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I + F +GK L+D V Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + ++ + + + S+ ++S L + ++L EG++++LV FGTF V +A RTG Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I I +F K L++ V Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQV 101 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI V+ ++A+L+KT+A +E ++TE+L + V++ G +F + TG Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++ I A +P F GK LK+ V Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ VI+E+ L++ + K ++ T AI ++L ++L FG F+V RA R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG + + V F GK ++ V+ Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVR 90 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI +AE+A + K + +++ I E L G + L G F++ +A R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I A F KALKDAV Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 44/88 (50%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +S+ A + L+ ITE+L G+ V+L FG F++ + +R GR Sbjct: 73 TRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIGR 132 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG I V F + K L D + Sbjct: 133 NPRTGVAAVIPPRRVLKFKASKVLLDRL 160 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 59/89 (66%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QL++V+A+ + SK A+ A+ L +I E+LK+G VQLVGFG F V R R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN +TG+E+++ A VP F +G LK A+ Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKAL 111 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 58/89 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+V+A++ LSK +A L + L + ++K+G AV L GFG+FK + RA R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG +IKIAA +P F G A K AV Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + + LS+ ++ +ES L ++++L G+ V++ FGTF V ++ R G Sbjct: 6 LTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 53/87 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT L+ + EL++ QA +E+ + +T +L G+ VQL G G+F V HR TG Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 NPQTG+ ++IAA N F +GK L+D Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L D + + LS+ ++ +ES L ++++L G++V++ FGTF V ++ R G Sbjct: 6 LTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I V F +K+ V Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERV 94 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 42/89 (47%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I E+L + + VQ++ FGTFKV HR ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK A V F +GK+LKD+V Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSV 89 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A+K L K +AK L++ + +TE + E + + LVGFGT + +R Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG + I A F GK L +A+ Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAM 89 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L+ +I+E + + +++ L AI +S+ +G+ +++ GFGTFK+ R R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T +++ + A VP F + K+AV Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAV 89 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +++ I EK SK ++ +E I E+L+ G+ +++ GFG F V +A+R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG EI I+A + F + LK ++ Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K+ +I+ + L++ + + +E+ ++ESL +G V+L GFG F++ + R G Sbjct: 4 LTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + ++A V F +G+ + V Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQV 92 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 94.4 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 43/88 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K LI IA+ + K +E L + E L EG+ +++ GFGTF R R R Sbjct: 5 TKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPAR 64 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + I VP F +KD + Sbjct: 65 NPRTGETVLIDERLVPTFKFSNDIKDKI 92 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K Q+++ I + L Q +E L I SL+ GD V + GFG F+V +++R G Sbjct: 3 LTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I + A V F L+D + Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRI 91 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K ++++I EK L+K ++ + + + + V++ GFG F+V R R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG E I V F + KD V Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEV 89 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+++I+++ + + + + I +SL E + V + FG+F++ H+A R Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + N FV GK L D + Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLL 89 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 46/85 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L +A+ + T+A+ ++ I ++L +G+ V+L GFG F + + R GR Sbjct: 4 TRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALK 86 NP+T ++I A V F + ++LK Sbjct: 64 NPKTKVPVEITARRVVTFHASQSLK 88 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 54/87 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK QLI ++ LSK A+ ++ I ++LK D V++ GFGT+KV R R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG++I+I A+ F+ KALK+ Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKE 87 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG-DAVQLVGFGTFKVNHRAERT 59 MN+++L+ +A++AE+++ A A L + + + + +G + V + GF TF+ HRA RT Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ I+I A +G LK+A K Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEAAK 91 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 35/81 (43%), Positives = 52/81 (64%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KT+LI+ +AE+ ++K+Q + E L+ I SL++G+ V + GFGTFKV R+ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 63 PQTGKEIKIAAANVPAFVSGK 83 P+TG+EI+I F K Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++LI IA + L+K A ++ + + ++L +G+ V+L GFG F+ R R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++ + + F G ++ V Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L+ +A + ++ + + + + + L I+ SL++G V L FG+ + R ER R Sbjct: 122 TRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVAR 181 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG+++ + A P F K LKD V+ Sbjct: 182 NPRTGEQLTVPATTFPTFSFSKVLKDKVR 210 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + QLI +A L QA A + + L ITE+L EGD ++L GFG K R R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++ A AF + + + + + Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERL 90 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 1 MNKTQLIDVIA---EKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHR 55 MN+ +L+ + E+ +++ + L+ L EG V L G + R Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 56 AERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 A R GRNP+TG+ I I A V F +GK L++A+ Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 44/87 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L +A + LS++ A A+++ + + K V + GFGTF R R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP T + IKI AF ALKD Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 42/88 (47%), Positives = 58/88 (65%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +L+ IAEKA ++K QAK ALE+ + A+T+SLK G V+LVGFGTFK RA T R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + A+ F G+ LK ++ Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSL 90 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LID IA L+K +A+ AL TL+AI +++ GDA+ LVGFG+F R ER Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG++I + AA F G+ KDA Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDA 89 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K L++ I E+ L +T+ +E+ + E+L+E + V++ GFG F V + R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+T + ++I V F + LK +++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQ 90 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M KT+LID IA L+K +A+ AL TL+AI +++ +GD + L+GFGTF R ER Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+EIK+ AA F +G+ KDAV Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 35/86 (40%), Positives = 52/86 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI +A K +LS +A AL+ + ITE++++G+ + LVGFG+F + R ER G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALK 86 NP TG + I A F G ++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 51/90 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A KA + + QA+ L++ +TE++ +GD V L G + + RA RTG Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNPQTG+ + I A G LK A + Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAAAR 90 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 40/89 (44%), Positives = 64/89 (71%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+LI+ + +K+ L+K Q+ A+ + ++I +SL + + VQ++ F TFKV+HR+ER Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+P+TG++IK A VP F +GK LK +V Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASV 89 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +K LS+T++ A +E L IT+ L++G+ V+L FG+F V + +R GR Sbjct: 9 TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIGR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG E+ I+ V F LK + Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 50/85 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +I+ + + ++KT+A+ A+E+ ++ ++L++GD ++L GFG F V R G Sbjct: 20 LIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIG 79 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP+TG E+ I F GK L Sbjct: 80 RNPRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 54/88 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+T+ + IA ++K +A+ + S + + ++ G +VQLVGFG F+V H+ R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP G+ I+I A NV F G+ LK+A Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNA 88 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 43/89 (48%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI +A + L A + + + + + G+ + G G F V R G Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG ++I V F GK+L++AV Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 44/90 (48%), Positives = 66/90 (73%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK++L+ IA+K+ELSK +++ AL + + + E+L +G+ VQLVGFGTF+ R R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 61 RNPQTGKE-IKIAAANVPAFVSGKALKDAV 89 RNP+ +E I+I A+N P F +GK+LK+AV Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 1 MNKTQLIDVIAEKAEL-----SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHR 55 M K +L + E L + + +TL IT L GD V+L GFG FKV R Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 56 AERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R GRNP+TG+ ++I A+ F GK LK+A+ Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEAL 94 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K I ++A+ A L+K A A ++ ++ IT+ L +GD++ +GFGTF RA R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R P TGK IK+ A V F GK LK+AV Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAV 89 >UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=A7V341_BACUN Length = 404 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N LID +AE+ +SK A + ++ I ESL++ V++ G GTFK+ R Sbjct: 5 LNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F ALKD + Sbjct: 65 VNVNTGERFEIQGHTKVSFTPEPALKDII 93 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ +AE+ K A++ L +I E+L+E V++ GFG+F V R RT Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +NP+TGK + I F K+LKD + Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K LI + +K L+K QA ++E+ L ++L G + L GFG F V ++ R Sbjct: 3 LTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRR 62 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG E+ + A V F L+D + Sbjct: 63 GRNPQTGDELTLEARRVVTFKPSGILRDKI 92 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 91.3 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 46/89 (51%), Positives = 65/89 (73%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NK +LI IA+ AE+SK +A+ AL S + I +++ +GD+VQL+GFGTF + RA R G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +KIAAA F +GKA KD+V Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSV 101 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 91.3 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 43/89 (48%), Positives = 54/89 (60%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L+D +A+ L K KA +++ LA + E+L G VQL GFGTF+V R RTG Sbjct: 7 TKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTGV 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 P T ++IKI A PAF GKALKD VK Sbjct: 67 KPGTKEKIKIPATQYPAFKPGKALKDKVK 95 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKT-QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M ++ + IA + +L+K QAK ++S AI ++ G L GFG FKV R Sbjct: 30 MTTANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPARE 89 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP TG I IAA+ F KA+KD++ Sbjct: 90 GRNPSTGATIAIAASRKLTFTPAKAIKDSL 119 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 50/88 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + +K LS+T++ A +E L IT+ L+ G+ V+L FG+F V + +R GR Sbjct: 9 TRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIGR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG E+ I+ V F LK + Sbjct: 69 NPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 1 MNKTQLIDVIAEKA------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 M K L+ + E++ L + +A L++ + L G V L G G K Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RA R GRNP+TG+ + I A V F + L ++ Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKLDRDIR 96 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 48/81 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT + IAEK + A+ + + ITESL G+AV+L GFGTF + H ER Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 61 RNPQTGKEIKIAAANVPAFVS 81 RNP+TG+ +++ A + P F + Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+QLI IA + SKT + + S L I +++ G+ V LVGFG+F+ R R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++ + A+ +P F G ++ V Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKV 89 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MN++ LI +AE+ L + + L + ++ +G+ V++ GFG+F +N+R R Sbjct: 6 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 65 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDA 88 GRNP+TG +I++AA P F GKALK+ Sbjct: 66 GRNPKTGAKIEVAAKYHPRFKPGKALKEM 94 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K + + ++AEKA LSK + +++ L IT++LK GD V +GFGTF RA R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 + P T + +K+ A V F GK LK+AV Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVI-AEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K LI+ + A +LSK Q ++S + + +++ + GFGTF V RA R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNPQTG EI+IA F LK A+ Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT LI +++ ++LSK AK A+E L +T+ + G +++ GFG F HR R G Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+T + ++ VP F GK LK+ V Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIV 98 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 49/88 (55%), Positives = 66/88 (75%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK++LI+ IAEKA++SK A ALE+ + + +LK+GD+V LVGFGTF V RA R+GR Sbjct: 28 NKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSGR 87 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG IKI ++ VP F GKALKD++ Sbjct: 88 NPRTGAVIKIKSSKVPKFRPGKALKDSL 115 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 55/88 (62%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK+ L+ IA+K+ L+K QA+AA+ + E++K G+ ++L G + + RA RTGR Sbjct: 4 NKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG++I I A+ +G LK AV Sbjct: 64 NPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 48/90 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +L+D IAE+ ++K +++ L + + E +K+ + L+GFGTF V + R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP T I+I A V F L +K Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLLK 90 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K+ LI V+AE+ ++Q + + I E+L +G+ V + GFGTF+V+ RA R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I+I A P+F G LK AV Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAV 89 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V+A + L+K A L+ I +++K+ GFGT+ V R R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + +K+ A+ F K LK+++ Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L IA +S+ +AK LE LA+I ++L+EG+ + L FGTF++ + R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +++A N P+F ALK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L ++ + A ++ + A+ + G V L GFGTF+ RA RTG Sbjct: 1 MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ ++I P F + V Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFV 88 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 53/89 (59%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++LI+ +A+ ++ A+ A+ ++ +L D +++ GFG+FKV + G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I++ + +P F GK LK+ V Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89 >UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides RepID=C6IG13_9BACE Length = 487 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + LID++A K ++K A+A ++ I ++L+ V++ G GTFK+ R Sbjct: 5 LTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F L+D + Sbjct: 65 VNVNTGERFQIKGHTKVSFTPDTNLRDTI 93 >UniRef50_C9LHL9 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHL9_9BACT Length = 423 Score = 89.4 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 1 MNKT----QLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRA 56 MN+ ++ D A++A +SK +A+A + I E L V++ GFGTFKV Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 57 ERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 ER N TG+ I+I + +FV LKD + Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLI 93 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 89.4 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 48/88 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L +AE+ ++ A+ +++ I + G+ VQ++GFGTF RA R GR Sbjct: 3 NKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NPQTG I++ A P F +G+ + V Sbjct: 63 NPQTGAAIQVPAGTSPRFHAGQTFRTRV 90 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 89.4 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 53/85 (62%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT I +A+KA+L++ KA E+ + I E +K+G+ + LVGFG+F V+ RA R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 NP++GK I I A+ F AL Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++L+ +I + A S ++ L++ + + E L G V L G G V RA R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ I I A P F + KALKDAV Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAV 88 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + K LS+T++ A +E L + +++ G+ V+L F TF+V + ER GR Sbjct: 7 TRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+E+ I V F + LK + Sbjct: 67 NPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L + + EK L + +A +E L I +L+ G+ ++L FG+F + ++ER G Sbjct: 20 LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + I V F + +KD + Sbjct: 80 RNPKTGEIVPITPRRVIVFKASNIMKDRI 108 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K +++D IA + ++ + K +E + AI+ + EG+ ++L GFG FK R ER R Sbjct: 9 TKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRTR 68 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + I A P F K L + + Sbjct: 69 NPKTGELVNIPAKVRPVFEPSKDLIEKI 96 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 89.0 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+ LI IA K LS Q ++ L + + L + V L FG F V G Sbjct: 1 MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R+PQTG+ +K+ NVP F S L+ + Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELRKRL 89 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 89.0 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L+ IA KA +S+ L + T+SLK GD V L G G + R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ ++I A VP + L DA+ Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDAL 89 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 88.6 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 + K++LID + K L+K ++ + IT+ + +G AV +VGFG F RA RT Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GRNP TG IKIAA P F +GKA KD+V Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 88.6 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 46/88 (52%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K L + IA K + + K ++ L I L +G+ ++L FG F++ RA R R Sbjct: 5 TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ + + NV F GK +++ V Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKV 92 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 42/87 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K + + + E + QA+ +++ + ++ ++L GFG F V ++ R GR Sbjct: 4 TKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRPGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDA 88 NP+TG+ +I A V F + L+ Sbjct: 64 NPKTGQPYEIKARRVVTFSASALLRAK 90 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 88.6 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ + E+ L K +A + + + + ++EG+++ + GFG+F ++ER Sbjct: 8 MNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERLA 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+E+ I F +G L + Sbjct: 68 RNPKTGEEVMITPRVSVKFKAGSDLLKEL 96 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 88.2 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +NKT LID +A++ +K L +TL AI+ +++ GD V L FGTF R R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP TG +KI AAN P+F + KD VK Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVK 112 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 9/97 (9%) Query: 1 MNKTQLIDVIAEKAE---------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + + L+K +A+ AL L ++ ++K + + GFG+F+ Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 ++HR R GRNP+TG ++KI A N P F +G+ +K+A Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEA 97 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +LI ++AE+ ++ A +E + I +L+ G+++++ FG F+V + R G Sbjct: 3 LTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ I I V +F L+ A+ Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAI 91 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ +L+ +A+K +++ +A +++ TE+L+ ++ L+GFGT + ER G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+ G I A F GK L + Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQL 89 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 87.9 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 50/89 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ ++D + ++ +LS+ ++S ++ +T +L+ G+ V+L FG F+ R G+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 + +TG+ + I + V F K LK AV+ Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVR 95 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 87.9 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I E+ + S+ + K +E L + +S+K+ A+ + GFG F+ + R G Sbjct: 6 LTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + I + V F + + + Sbjct: 66 RNPQTEEAITLPGRTVVVFRLSRRFRAEL 94 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 87.9 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK + + +A+ +SK A+ + + L + GF TF+V + R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EI I A F +GK D V Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKV 89 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 87.9 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K+ L +A + ++ A+ ++ L A+ E L GD V++ FG +V+ +A R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 GRNP+TG + I A F G+ALK+A K Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNAQK 91 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 52/87 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL+D++A+K L+K Q++ A+ + L + +++K+G +V L G GT V A RTG Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 63 PQTGKEIKIAAANVPAFVSGKALKDAV 89 P T + I+I A AF LK ++ Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 42/89 (47%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN+ + + A + + T + +++ L +++ L G V + FG+F+ + R Sbjct: 1 MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ + F GK L + + Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKM 89 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 45/88 (51%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K LI IAE SK + + + + L I+ L + L FG F+++ RA R+G Sbjct: 19 TKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSGI 78 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+T + I+I A F K+LKD V Sbjct: 79 NPKTSEIIQIKATKSVKFKVSKSLKDQV 106 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 K + +V+ + +++ QA + I ++L G++V+L FG F + ++ R GR Sbjct: 4 TKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRVGR 63 Query: 62 NPQTGKEIKIAAANVPAFVSGKALK 86 NP+TG+ ++I+A V F SG LK Sbjct: 64 NPKTGEMVEISARRVVVFKSGPKLK 88 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 49/87 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI + EK L A + S +I ++L GD V++ GFG+F V TG Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKD 87 RNP+TG ++++ +P F +G+ K+ Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKN 87 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 54/89 (60%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ K + QA AA+E+ + I ++ +GD+V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +K+ +VPAF G K + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ IAE+AE++K + A+ + E++ GD++ + GFGT R + Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN G + + VP F KA K V Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQV 89 >UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZB4_PELTS Length = 89 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L+ ++A + +++ QAKA L++ + ++ G V+ G GTF+ R R Sbjct: 1 MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN QTG+ + + A + +F + + + V Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89 >UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi RepID=Q5LM20_SILPO Length = 91 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KTQL+ +AE K A AAL++ A IT + G AV L G G R ER Sbjct: 1 MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ AA V KALKD+V Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSV 89 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K +++D I EK + ++ + K +ES L + +++K+ A+ + GFG F+ + R G Sbjct: 6 LTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT + I + V F + + + Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFRAEL 94 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 45/85 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K LI IA K+ L K Q +E + AI E+L +G++V LVGFGTF+V R R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 N TG+ + I F G + Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ +K + QA AA+E+ + I ++ +GD+V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +K+ +VPAF G K V Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVV 89 >UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969776 Length = 471 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N LI+++AEK + K A++ ++ I ESL+ V++ G GTFK+ R Sbjct: 5 LNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F ALKD + Sbjct: 65 VNINTGERFEIQGHTKVSFAPEPALKDLI 93 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN++QLI+++A+K L+K K ++ I + +KEG + L GFG+FK ++ R Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RN + G ++++ + F L + + Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQM 89 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 86.7 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + L I EK S+ A ++ + +L + ++LV FGTF V ++ R G Sbjct: 6 LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG ++I+ ++ +F K++++ + Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERI 94 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK L ++ + +SK A A++ ++++L V + FG F++ R R G Sbjct: 6 NKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMGI 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDA 88 NP T + + I A +P F + LK+ Sbjct: 66 NPVTKERMMIQATKLPKFRPSQTLKNK 92 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 46/89 (51%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M +L V+A + L + + + L+ + E L G+ V+L GFG F V R R Sbjct: 45 MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 ++P+ G+E+++ A F + L++A+ Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREAL 133 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 86.3 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LIDV+ EK + A A+E + I ++ G++V + GFG F+ RA R Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +K+ +VPAF G K + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 85.9 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 1 MNKTQLIDVIAEKAE--LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAER 58 MN++QLI+ I E A L+KT + L + E+L GD V + G V RA R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 59 TGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 TGRNPQTG+ ++I A V KALK+ V+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQ 92 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLK-EGDAVQLVGFGTFKVNHRAERT 59 MNK++LID +A A ++K AKAALES ++ +T +L + V LVGFGTF V RA R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 G NP T K IKIAA V F +G L +V Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 45/88 (51%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ L+ I+++ LS+ + + + I +S G+A+++ F TF V + R GR Sbjct: 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGR 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 N QT +E+KI V F + LK + Sbjct: 66 NLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 85.5 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAEL-SKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K ++ + + +AK AL++ AIT + + V+L GFG F + R+ R Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 GR+ +TG+ I I A V F GKAL+ AV Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 41/89 (46%), Positives = 55/89 (61%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN LID IA+ + +K A + + + I+ +LK G+ V++ G G F V+ RA R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG I+IAA F +GKALKDAV Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAV 89 >UniRef50_B8II37 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8II37_METNO Length = 113 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 1 MNKTQLIDVIAE-KAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + QLI IAE L A+A + + L + E+L + + + L GFGTFK N R R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKAL 85 G NP+TG+ + + A F + + Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEM 85 >UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria RepID=B0SI26_LEPBA Length = 101 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K++++ +AE ++K A L+S + + K+ A + G G +R +R G Sbjct: 8 MKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRKG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ I I A V F K KDAV Sbjct: 68 RNPATGEAIVIPAKTVVKFTLSKTCKDAV 96 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + L D +A +K A+ A++ AAI ++ +G+ V L GFG FKV R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+ IKIAA+ +F KA+KD + Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRL 90 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K ++D I EK E ++ + K ++ L + +S+K +++ + GFG F+ + R G Sbjct: 6 LTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQT I + V F + + + Sbjct: 66 RNPQTNASIMLPPRKVVVFRLSRKFRAEL 94 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M K++LI+ +++K + L+K Q + ++ + E+L G+ +++ GF FKV R ER Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG++IK+ F KALK+A+ Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEAL 90 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 6/95 (6%) Query: 1 MNKTQLIDVIAEKA------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 MNK +L+ + +KA ++K + A + + + I E + EG+ V LVGFG+F+ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 R ER GRNP+TG ++ I A VPAF +GK KD V Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ +A + +K A AL + + L G+ + + G GTF + ++A R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTG+ ++IAA F + KAL DAV Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAV 89 >UniRef50_D1PUX5 DNA-binding protein HU n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PUX5_9BACT Length = 94 Score = 85.2 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGD-AVQLVGFGTFKVNHRAERT 59 MNKTQLI +A K E+SK A + + L I ++L EGD V + FG F + AER Sbjct: 1 MNKTQLIAALASKTEISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAERQ 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKAL 85 G NP TG+ I IAA AF + L Sbjct: 61 GVNPATGERITIAAREKVAFNASDNL 86 >UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C8S3_9BACE Length = 433 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N LI+++AEK + KT A++ ++ I ESL+ V++ G GTFK+ R Sbjct: 5 LNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F LKD + Sbjct: 65 VNINTGERFEIQGHTKVSFTPEPTLKDLI 93 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 1 MNKTQLIDVIAEKA---------ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFK 51 MNKT+ I + E +K A+ AL L +I + K +V + GFG+F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 52 VNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 + R R GRNP+TG ++ I A P F +G LK+A Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEA 97 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 84.8 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 46/88 (52%), Positives = 58/88 (65%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT+L+ IAE AEL+K QA+ L+ +A+ T +LK GD V ++GFG F R RTG Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNPQTGK ++IA F GKALKD Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKDL 88 >UniRef50_A6L5E9 Putative integration host factor IHF alpha subunit n=6 Tax=Bacteroides RepID=A6L5E9_BACV8 Length = 476 Score = 84.8 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 43/88 (48%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 +I+++AEK ++K A+ ++ I E+L V++ G GTFK+ R Sbjct: 6 TIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESV 65 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ I+I +F ++KD + Sbjct: 66 NVNTGERIEIQGHTKISFTPDSSMKDLI 93 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 84.8 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 53/89 (59%), Positives = 66/89 (74%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK LI +A EL+K + AA+++ AA+TE L +G+ VQL+GFG F+V RA R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NPQTGKE KIAA+ VPAF +GKALKDAVK Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis RepID=Q02ZW9_LACLS Length = 120 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/84 (39%), Positives = 50/84 (59%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 K +LID +A++ ELSK A A+ + + AIT + EG V + FGTF+V A R + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 + ++I + N+P F +GKALK Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87 >UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZCF1_9BACE Length = 435 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 41/89 (46%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + L D++A K ++K A+ ++ I ++L+ V++ G GTFK+ R Sbjct: 5 LTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRES 64 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 N TG+ +I +F L+D + Sbjct: 65 VNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 3/89 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAIT---ESLKEGDAVQLVGFGTFKVNHRAE 57 MNK + + +AEK ++K +A L + + I E +E V L GFGTF +R Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALK 86 R G+NP+TGK I I A VP F K LK Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae RepID=C7H232_9FIRM Length = 103 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 47/90 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M ++Q+I+ +A K ++ Q + +++ I + L+ + V + GFG F++ R + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+T ++ + ++P F + K ++ Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKLE 90 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK L++ + + K A+ + L +TE+LK+G++V L+GFGTFKV R+ RTG Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNPQTGK IKI A VP F +GK LK+AV Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 84.0 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 7/95 (7%) Query: 2 NKTQLIDVIAEKAE-------LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNH 54 NK +L I+EK+ L+ ++K +++ A+ITE L + +Q++ FGTF+ Sbjct: 3 NKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKKT 62 Query: 55 RAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RA R G NPQ G+ I+I VP F +GK LK+AV Sbjct: 63 RASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 84.0 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 52/88 (59%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 QL +AE LS+ QA L +++I + LK+G +++ G GT +V RA RTGR Sbjct: 39 TLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGR 98 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG+ I+I A+ AF + K L +++ Sbjct: 99 NPATGEAIEIKASKKVAFRAAKDLSESI 126 >UniRef50_Q2WAF5 Bacterial nucleoid DNA-binding protein n=5 Tax=Magnetospirillum RepID=Q2WAF5_MAGSA Length = 89 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 52/89 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K+ + I + A + QA AA+E+ LA I E +K L+GFG+F + R R G Sbjct: 1 MSKSAMSKAIRQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TGK I IAA+ F + ALK ++ Sbjct: 61 RNPRTGKTIDIAASTSIKFSTSAALKKSL 89 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 NK +LI+ +A + + A AAL++ L + ++ +G+ V + GFG F+ R RT R Sbjct: 19 NKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTAR 77 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+ +K+ +VP F G K+ V Sbjct: 78 NPRTGEAVKVKKTSVPTFRPGTGFKEMV 105 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 47/89 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + L ++E E+ K QA+A + + + LK+G +++ G G +V R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG+EIKI A+ AF K LK+ V Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 1 MNKTQLIDVIAEKAE---LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 + K + + + E ++K A+ A ++ + + + + G V+L G G F V RA Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RTGRNPQTG+ I I A F++ K L D + Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGL 93 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 49/88 (55%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + L + + K LS+T++ +E+ + I ++ G+ V+L F TF++ + ER GR Sbjct: 7 TRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP+TG+E+ I+ V F + LK + Sbjct: 67 NPKTGEEVPISPRRVMTFKASNVLKQRI 94 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 32/73 (43%), Positives = 47/73 (64%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M+K + +D A+ +K +A+ + L + ESL +GD+VQ VG+GTF+V RA RTG Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 61 RNPQTGKEIKIAA 73 NPQT +EI+I Sbjct: 61 INPQTKEEIQIPE 73 >UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT Length = 97 Score = 83.6 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MN + I +A + ++ +++ +++ + + +S + GD V ++GFGTF+V R ER Sbjct: 1 MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP TG + + V F +K V+ Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHVR 90 >UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZX6_XANC5 Length = 99 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK+ L IA + +++ +A + +++ + L E V + FG F++ H+ R Sbjct: 1 MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDA 88 RNP+TG+ +++ F + LK Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRR 88 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 38/88 (43%), Positives = 48/88 (54%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 ++ D IA + L K QAK +ES ITE+ G + FG FK+ ER GR Sbjct: 3 TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG IKIAA+ F GKA+KDA+ Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDAL 90 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAE-LSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 MN++ LI+ +A + + K + A+ + +L +G +++ FG + R T Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+++K + F GK L+ + Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59 M + LI IAEK A +S + ++ + ++ + EG+++++ FG F+++HR R Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG+++ + F GK LK +K Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMK 91 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 83.2 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 13/97 (13%) Query: 7 IDVIAEKA------ELSKTQAKAALESTLAAITESLKEGDAVQL-------VGFGTFKVN 53 IA + LS+ AK ALE+ + A T++LK+GD + L GFGTF ++ Sbjct: 110 AKYIASETRRNSHEGLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSIS 169 Query: 54 HRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 R+ RTGRNPQTGKEI+IAA NV F +G L AVK Sbjct: 170 KRSARTGRNPQTGKEIQIAAKNVVKFKAGAELSKAVK 206 Score = 76.3 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 48/64 (75%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +LI+ +A ++ LSK+ AK AL++ A T++L++GD+ LVGFG+F ++ R+ RTG Sbjct: 1 MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60 Query: 61 RNPQ 64 RNP Sbjct: 61 RNPS 64 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 83.2 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 +N + LI IAE+ S+ KA L + I ++ + G + G G FK + RA R G Sbjct: 4 LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG EI+IAA++ +F KA KD + Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRL 92 >UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAF Length = 90 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +L++V++EK + K + + L++ ITE LK+G+ L GTFKV RAE+ G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TG++I I A F + K L +K Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNLSTLIK 90 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 49/89 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + KT++ + + ++S+ + +E L I E+L++G+ V + GFG F VN + R G Sbjct: 3 LTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP T +E+ + A V F L++ + Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLI 91 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K L++ I+ + ++ + ++ + I+ +L EGD V + FGTF+V + G Sbjct: 5 LTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64 Query: 61 RNPQTG-KEIKIAAANVPAFVSGKALKDAV 89 RNP+ +++ I A +V F GK LKD V Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 50/90 (55%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + + + I + LS+T++ +++ L I +L G+ V L F F V ++ R G Sbjct: 6 LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAVK 90 RNP+TG++ +IAA V +F + A+K ++ Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQIQ 95 >UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5S4_MYCS5 Length = 91 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 45/89 (50%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M KT+ I +++K L+ + + + + E L G+ VQL G F V RAERT Sbjct: 1 MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 +N TGKE +AA V + K L D V Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVV 89 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGR 61 + ++D + + L++ + LE L + E L ++V+L FG F V + R GR Sbjct: 7 TRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARVGR 66 Query: 62 NPQTGKEIKIAAANVPAFVSGKALKDAVK 90 NP+TGKE I A V F ++ V+ Sbjct: 67 NPKTGKEAPITARRVVTFKPSPLMRRRVE 95 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%) Query: 1 MNKTQLIDVIAEK---AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 MN+T +++ L + + AL+ + IT S+ G++V+L GFGTF+V R + Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKAL 85 R GRNP+TG+ + I + V F + Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHF 88 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 82.5 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 1 MNKTQLIDVIAEKAELSKTQAK---AALESTLAAITESLKEGDAVQLVGFGTFKVNHRAE 57 M + ++ I EK E S+ AK + L I+ +L+ G+ V++ GFGTF V + Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 58 RTGRNPQTGKEIKIAAANVPAFVSGKALKDA 88 R GRNP+TG+ + I A + F ++L A Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKA 91 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 50/89 (56%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K QLI IAE + KT A++ALE + + L++G + L G KV R RTG Sbjct: 3 LTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP TG I+IAA V FV K L D++ Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSI 91 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 + K LI+ I + SK ++ ++ L I ++LK ++L FGTF + + R G Sbjct: 8 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T ++ I+ +V F + K KD V Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLV 96 >UniRef50_C6ZBE9 DNA binding protein HU n=7 Tax=Bacteroides RepID=C6ZBE9_9BACE Length = 90 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNKT LI ++AEKA + ++S ++++L+E D V + FGTFK + R Sbjct: 1 MNKTDLIKMVAEKANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARIA 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKAL 85 RNP TG+ +++ V F K + Sbjct: 60 RNPATGEPVEVPEKEVVKFKPSKNI 84 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 49/84 (58%) Query: 3 KTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN 62 KTQL++++A++ L+K Q++ A+ S L + +L+ G +V L G GT V A RTG Sbjct: 36 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95 Query: 63 PQTGKEIKIAAANVPAFVSGKALK 86 P T ++I+I A AF LK Sbjct: 96 PGTSEKIQIPAGKKVAFKVASTLK 119 >UniRef50_B1H0L9 DNA-binding protein HU-1 n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0L9_UNCTG Length = 89 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 44/89 (49%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K ++ +++ + L++ + A+++ + I +LK + L G G+F+ R R G Sbjct: 1 MKKPDIVKQVSDISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+T + I I +F L+ + Sbjct: 61 RNPKTKEVILIPPGKKVSFKPTTTLRKII 89 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 48/89 (53%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 M K +LI+ I +SK A+ + I++ L EG V + GFG F ++ R+ R G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 NP TG++I I A+ F K LK+++ Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG 60 MNK +++D + + + QA +A+E+ + I ++ +GD V + GFGTF+ R RTG Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 61 RNPQTGKEIKIAAANVPAFVSGKALKDAV 89 RNP+TG+ +KI +VP F G A K+ V Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.170 0.485 Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 639,637,018 Number of Sequences: 3077464 Number of extensions: 26239893 Number of successful extensions: 78017 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1403 Number of HSP's successfully gapped in prelim test: 143 Number of HSP's that attempted gapping in prelim test: 76196 Number of HSP's gapped (non-prelim): 1562 length of query: 90 length of database: 1,040,396,356 effective HSP length: 60 effective length of query: 30 effective length of database: 855,748,516 effective search space: 25672455480 effective search space used: 25672455480 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.5 bits) S2: 88 (38.2 bits)