47 c1cygA_ Probab=100.00  E-value=0  Score=487.61  Aligned_columns=427  Identities=17%

Q ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCC-----------------CCHHHHHHHHHH--HHHHCCCCEEEECCCCC------
Q ss_conf             87558647998510334326887744-----------------679999998989--99975998999915514------
Q batch____       237 NQFDAPISIYEVHLGSWRRHTDNNFW-----------------LSYRELADQLVP--YAKWMGFTHLELLPINE------  291 (728)
Q Consensus       237 ~~~~~~~~IYE~Hv~~f~~~~~~~~~-----------------gty~~~~~~li~--YLkeLGvt~I~LmPi~e------  291 (728)
                      |...+..+||++++..|....+.+..                 |+|++++++| |  |||+||||+||||||+|      
T Consensus         6 ~~~w~~~~iY~i~~drF~~g~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kL-d~pYl~~LGv~~i~l~P~~~~~~~~~   84 (680)
T c1cygA_           6 KVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSSGCTNLRKYCGGDWQGIINKI-NDGYLTDMGVTAIWISQPVENVFSVM   84 (680)
T ss_dssp             TTCCTTCCEEEECGGGTCCSCGGGCCCGGGBCGGGCSTTSBCCCCHHHHHHHH-HTSTTTTTTCCEEEECCCEEECCCCC
T ss_pred             HHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-CHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf             15641574699932001378888887665566676554441578599999762-88779972998999877514666555


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCC---------------
Q ss_conf             ---88888867666401461756789999999999999989889997265646787735521798---------------
Q batch____       292 ---HPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDG---------------  353 (728)
Q Consensus       292 ---~p~~~~wGYd~~~y~a~~~~yGt~~dfk~LVd~aH~~GI~VIlDvV~NH~~~~~~~~~~~dg---------------  353 (728)
                         .+...+|||++++|++|+++|||++|||+||++||++||+||||+|+||++.++.++..+..               
T Consensus        85 ~~~~~~~~~~GY~~~d~~~id~~~Gt~~dfk~lV~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (680)
T c1cygA_          85 NDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYT  164 (680)
T ss_dssp             SSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETTEEEECST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56667677777565624335633289999999999999889889999962336887754320001573454653046788


Q ss_pred             --CCCCCCCCCCCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCCCCCC
Q ss_conf             --63335567677646788--------86112688999999999999999987299899976666414434445554444
Q batch____       354 --TNLYEHSDPREGYHQDW--------NTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWI  423 (728)
Q Consensus       354 --~~~y~~~~~~~~~~~~w--------g~~~~n~~~~~Vr~~l~d~~~yWi~eygVDGfR~Dav~~m~~~~~~~~~~~~~  423 (728)
                        ...+++......+...+        ++++||++||+|+++|+++++||+ ++||||||||++++|..           
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~-~~giDGfR~D~~~~~~~-----------  232 (680)
T c1cygA_         165 NDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMWI-DMGIDGIRMDAVKHMPF-----------  232 (680)
T ss_dssp             TCTTCCBCCSCBCCCSSHHHHHSSBSTTEEEBCTTSHHHHHHHHHHHHHHH-TTTCCEEEESCGGGSCS-----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEECCCCCCCH-----------
T ss_conf             765665336688755665631005778888546899999999999999998-44588377614103899-----------


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHH-HCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCHHHH
Q ss_conf             4445765653168999999999877569779996015886665-211225787721021838999999986138310234
Q batch____       424 PNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV-SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQY  502 (728)
Q Consensus       424 ~~~~g~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~-~~~~~~gg~gfd~~~n~~~~~~~~~~~~~~~~~~~~  502 (728)
                                   +|++++++.++...| .++++|.+...... .........++...+++.+.+.+.+.+.........
T Consensus       233 -------------~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (680)
T c1cygA_         233 -------------GWQKSLMDEIDNYRP-VFTFGEWFLSENEVDANNHYFANESGMSLLDFRFGQKLRQVLRNNSDNWYG  298 (680)
T ss_dssp             -------------HHHHHHHHHHHHHCC-CEEEECCCCCTTCCCHHHHHHHHHSSCEEBCHHHHHHHHHHHTTCSCCHHH
T ss_pred             -------------HHHHHHHHHHHHHCC-EEEEEEEECCCCCCCCHHHHHCCCCCCEEECCHHHHHHHHHHCCCCCCHHH
T ss_conf             -------------899999999862188-089998644775322013330367771454207999999986048778999


Q ss_pred             HHHHHHHC--CCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
Q ss_conf             44333210--1468102178405776412474200034689978999999999999998299249985302034689997
Q batch____       503 HHDKLTFG--ILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNH  580 (728)
Q Consensus       503 ~~~~~t~~--~~~~~~~~~~~~~sHD~~~~~~~~~~~~~~~~~~~~~~~~rla~a~~lt~pG~P~i~~G~E~G~~~~~~~  580 (728)
                      ..+.+...  ........+++++|||+.+........          ++++++++++|++||+||||||+|+|+.+..++
T Consensus       299 ~~~~~~~~~~~~~~~~~~v~f~~nHD~~R~~~~~~~~----------~~~~~a~~~~l~~pG~P~iyyG~E~g~~~~~~~  368 (680)
T c1cygA_         299 FNQMIQDTASAYDEVLDQVTFIDNHDMDRFMIDGGDP----------RKVDMALAVLLTSRGVPNIYYGTEQYMTGNGDP  368 (680)
T ss_dssp             HHHHHHHHHHHCTTGGGCEECSCCTTSCCSCCTTCCT----------HHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTT
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCH----------HHHHHHHHHHHHHCCCEEEECCEECCCCCCCCC
T ss_conf             9999988764188624328960578755032317999----------999999999999089719995635243687686


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf             56348000135564306899999999999887876543765555514886214898789999963999869999956598
Q batch____       581 DASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV  660 (728)
Q Consensus       581 ~~~~dW~~~~~~~~~~~~l~~~~k~Li~lRk~~paL~~~d~~~~~~~~~~~~~~~~~Viaf~R~~~~g~~vlVv~Nfs~~  660 (728)
                      .++.++.    ......++++++|+|++|||++|||+.|+        ......+++|+||.|+..+ +.++||+|++..
T Consensus       369 ~~r~~~~----~~~~~~~~~~~~~~L~~lR~~~~al~~G~--------~~~~~~~~~v~af~R~~~~-~~~~v~~N~~~~  435 (680)
T c1cygA_         369 NNRKMMS----SFNKNTRAYQVIQKLSSLRRNNPALAYGD--------TEQRWINGDVYVYERQFGK-DVVLVAVNRSSS  435 (680)
T ss_dssp             GGGCCCC----CCCSCSHHHHHHHHHHHHHHHCHHHHHCE--------EEEEEECSSEEEEEEEETT-EEEEEEEECCSS
T ss_pred             CCCCCCC----CCCCCCHHHHHHHHHHHHHHHCHHHHCCE--------EEEEEECCCEEEEEEECCC-CEEEEECCCCCC
T ss_conf             5432158----89888589999999999987683221571--------7899507948999996299-429984045555


Q ss_pred             CEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf             44457622589971899972783202876656755420023334773303999957854899996
Q batch____       661 PRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVR  725 (728)
Q Consensus       661 ~~~~~~i~lP~~G~~~~ilnSd~~~ygG~~~~~~~~~~~~~~~~~g~~~s~~i~lPp~s~vvL~~  725 (728)
                      ... ..+.+..+.........           ....................+.++|.++.+...
T Consensus       436 ~~~-~~~~~~~~~~~gt~~~~-----------~~~~~~~~~~t~~~~~~~~t~~~~~~~~~~~~~  488 (680)
T c1cygA_         436 SNY-SITGLFTALPAGTYTDQ-----------LGGLLDGNTIQVGSNGSVNAFDLGPGEVGVWAY  488 (680)
T ss_dssp             CCE-EECSCBCSSCSEEECCT-----------TTTTTCCCCEEECGGGBBCCEEECTTCEEEEEE
T ss_pred             CCC-CCCCCCCCCCCCCCCCC-----------CCCCCCCCEEEECCCCCEEEEEECCCCCEEEEC
T ss_conf             543-11222223221222210-----------013455520232045640356406775200002