120 c3a5vA_ Probab=98.61   E-value=6.6e-05  Score=51.73  Aligned_columns=344  Identities=12%

Q ss_pred             CHHHHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             799999989899-99759989999155148888886---76664014617567899999999999999898899972656
Q batch____       264 SYRELADQLVPY-AKWMGFTHLELLPINEHPFDGSW---GYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPG  339 (728)
Q Consensus       264 ty~~~~~~li~Y-LkeLGvt~I~LmPi~e~p~~~~w---GYd~~~y~a~~~~yGt~~dfk~LVd~aH~~GI~VIlDvV~N  339 (728)
                      ++++.++.+... |+++||+.|.|        ++.|   -++..+...+++. --|..||.|++.+|++|+++-+=..+ 
T Consensus        27 ~i~~~~d~~~~~gl~~~G~~yi~i--------DdGW~~~~~~~~G~~~~~~~-kFP~Glk~l~d~i~~~G~k~Gi~~~~-   96 (397)
T c3a5vA_          27 LILDAAKAIASSGLKDLGYNYVII--------DDCWQKNERESSKTLLADPT-KFPRGIKPLVDDIHNLGLKAGIYSSA-   96 (397)
T ss_dssp             HHHHHHHHHHHHTHHHHTCCEEEC--------CSSCBCSSCCTTSCCCBCTT-TCTTCHHHHHHHHHHTTCEEEEEEES-
T ss_pred             HHHHHHHHHHHCCCHHHCCEEEEE--------CCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCCEEEEC-
T ss_conf             999999999872971509529997--------38886765465665220613-15531799999999749735368714-


Q ss_pred             CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCC
Q ss_conf             46787735521798633355676776467888611268899999999999999998729989997666641443444555
Q batch____       340 HFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKE  419 (728)
Q Consensus       340 H~~~~~~~~~~~dg~~~y~~~~~~~~~~~~wg~~~~n~~~~~Vr~~l~d~~~yWi~eygVDGfR~Dav~~m~~~~~~~~~  419 (728)
                                                      .......+|..+.++...++.+.+- |||++.+|              
T Consensus        97 --------------------------------g~~~~~~~pg~~~~~~~~~~~~~~~-Gvd~iK~D--------------  129 (397)
T c3a5vA_          97 --------------------------------GTLTCGGHIASLGYEDIDAKTWAKW-GIDYLKYD--------------  129 (397)
T ss_dssp             --------------------------------SSBCTTSCBCCTTCHHHHHHHHHHH-TCCEEEEE--------------
T ss_pred             --------------------------------CCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEC--------------
T ss_conf             --------------------------------6445476821223689999999724-96758542--------------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC-----CHHHHCCCCCCCCCCCCEECHHHHHHHHHHHH
Q ss_conf             4444444576565316899999999987756977999601588-----66652112257877210218389999999861
Q batch____       420 GEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTD-----FPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMK  494 (728)
Q Consensus       420 ~~~~~~~~g~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~-----~~~~~~~~~~gg~gfd~~~n~~~~~~~~~~~~  494 (728)
                        ...............+....+.+++.+...++++-.-.+..     +.........-.......|...       ...
T Consensus       130 --~~~~~~~~~~~~~~~~~y~~~~~al~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~R~s~D~~~~~~~~-------~~~  200 (397)
T c3a5vA_         130 --NCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFASTISNSWRISGDVYDNFNRP-------DPA  200 (397)
T ss_dssp             --CTTCTTCCSSHHHHHHHHHHHHHHHHHTCSCCEEEECSTTTTCHHHHSTTTCSEEECSSCBCSCSSCC-------CTT
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCCCC-------CCC
T ss_conf             --87786546775457999999999998729929998138888741246641153689810667887863-------111


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf             38310234443332101468102178405776412474200034689978999999999999998299249985302034
Q batch____       495 LDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQ  574 (728)
Q Consensus       495 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~sHD~~~~~~~~~~~~~~~~~~~~~~~~rla~a~~lt~pG~P~i~~G~E~G~  574 (728)
                      ...............+.......+......+-...+.+.-+...-.+......++..+++-.++.+|    +.+|+.+  
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D~l~~~~~~~t~~e~r~~~a~w~i~~sp----l~~~~d~--  274 (397)
T c3a5vA_         201 CPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQEEYRVHYTIWAALKSP----LILGNDV--  274 (397)
T ss_dssp             SCCCSSCCSCCCSCBCHHHHHHHHHHHGGGCBTTBEEECCCBCTTSSSSCHHHHHHHHHHHHHTTCC----EEECSCS--
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCHHHHHHHHHHHHHHHCC----EEECCCC--
T ss_conf             2334322234430366887676535554305868788412122378888888999999999997273----5414773--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHCHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf             68999756348000135564306899999--9999998878765437655555148862148987899999639998699
Q batch____       575 GREWNHDASLDWHLLEGGDNWHHGVQRLV--RDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEII  652 (728)
Q Consensus       575 ~~~~~~~~~~dW~~~~~~~~~~~~l~~~~--k~Li~lRk~~paL~~~d~~~~~~~~~~~~~~~~~Viaf~R~~~~g~~vl  652 (728)
                                        ........+++  ++++++.+ .|..+......          .....-++.+...++..+|
T Consensus       275 ------------------~~~~~~~~~~l~n~~~i~i~~-~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~v  325 (397)
T c3a5vA_         275 ------------------TNITNTTKEIIMNKEVIAVNQ-DSSFSPANRIW----------VKGDQQLFSGNLANNTQVV  325 (397)
T ss_dssp             ------------------SSCCHHHHHHHCCHHHHHHHT-CTTCCCCEEEE----------EETTEEEEEEEETTTEEEE
T ss_pred             ------------------CCCCHHHHHHHCCHHHHHCCC-CCCCCCCCEEE----------CCCCCEEEEEECCCCCEEE
T ss_conf             ------------------218988998730754431044-55655673111----------3688259999858995899


Q ss_pred             EEEECCCCCEEEEEC-----------CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf             999565984445762-----------258997189997278320287665675542002333477330399995785489
Q batch____       653 VASNFTPVPRHDYRF-----------GINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATI  721 (728)
Q Consensus       653 Vv~Nfs~~~~~~~~i-----------~lP~~G~~~~ilnSd~~~ygG~~~~~~~~~~~~~~~~~g~~~s~~i~lPp~s~v  721 (728)
                      .++|.++++++ +.+           ++...+.+++           ...-..+.+......       ++++|||.+++
T Consensus       326 a~~N~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~v-----------~Dlw~~~~~~~~~~~-------~t~~L~p~~~~  386 (397)
T c3a5vA_         326 ILLNAGDSAAK-MTATWDDIWVYNLPNVDSSRSIEV-----------RDLWKQKSLGNFSNH-------ITLDVPAHGVR  386 (397)
T ss_dssp             EEEECSSSCEE-EEEEHHHHTGGGTTSBCTTCCEEE-----------EETTTTEEEEEECSE-------EEEEECTTEEE
T ss_pred             EEEECCCCCEE-EEEEHHHCCCCCCCCCCCCCCEEE-----------EEEECCCEECCCCCE-------EEEEECCCCEE
T ss_conf             99967998377-898774504444446567872899-----------995358221023650-------89998888579


Q ss_pred             EEEECC
Q ss_conf             999648
Q batch____       722 WLVREA  727 (728)
Q Consensus       722 vL~~e~  727 (728)
                      +|+-.+
T Consensus       387 ~~r~~~  392 (397)
T c3a5vA_         387 LLKFMD  392 (397)
T ss_dssp             EEEESS
T ss_pred             EEEEEE
T ss_conf             999810


