Phyre 2 alignment of P07762 with c2ya0A_

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Job Description | P07762
Confidence | 100.00% | Date | Thu Jan 5 11:00:31 GMT 2012
Rank | 11 | Aligned Residues | 572
% Identity | 18% | Template | c2ya0A_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:putative alkaline amylopullulanase; | PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
Resolution | 1.85 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |  |  |  | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Query Sequence |  | D | A | W | L | L | S | E | G | T | H | L | R | P | Y | E | T | L | G | A | H | A | D | T | M | D | G | V | T | G | T | R | F | S | V | W | A | P | N | A | R | R | V | S | V | V | . | . | . | G | Q | F | N | Y | W | D | G | R | R | H | P | M | R | L | R | K | E | S | G | I | W | E | L | F | I | P | G | A | H | N | .
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | .
Template Conservation |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | E | T | Y | S | Y | D | G | . | . | . | . | . | . | . | K | L | G | A | D | L | K | E | E | G | . | . | K | Q | V | D | L | T | L | W | S | P | S | A | D | K | V | S | V | V | V | Y | D | K | N | D | P | D | K | V | V | G | T | V | A | L | E | K | G | E | R | . | G | T | W | K | Q | T | L | D | S | T | N | K | L
Template Known Secondary structure |  |  |  |  |  |  |  |  | S | . | . | . | . | . | . | . |  |  |  |  |  |  |  | T | T | T | . | . | T |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  |  |  |  |  | S | S |  | T | T | S |  |  |  |  |  |  |  |  |  |  | G | G | . | G |  |  |  |  |  |  |  | T | T |  | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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