10/01/2012 01:40:31 : INFO  : Run start: Tue Jan 10 01:40:29 GMT 2012
10/01/2012 01:40:38 : INFO  : Initialised job
10/01/2012 01:40:41 : INFO  : Renaming log file 'phyre2_20120110_014028.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7ab94dcfc59d0b78/phyre_20120110_014028.log'
10/01/2012 01:40:42 : INFO  : Initialised job:
Sequence
>batch____
MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDATDVWVIEPKTGRKLAKL
ECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFGPLIQEMDAWLLSEGTHLR
PYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIP
GAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQTEERKKANQFD
APISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGY
QPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHS
DPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRKEG
EWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFWYK
WNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMP
GDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQ
RLVRDLNLTYRHHKAMHELDFDPYGFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPV
PRHDYRFGINQPGKWREILNTDSMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLAT
IWLVREAE

10/01/2012 01:40:44 : INFO  : Checked sequence
10/01/2012 01:40:49 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 01:40:50 : INFO  : PSI-BLAST 3 iterations
10/01/2012 01:43:55 : INFO  : PSI-BLAST 5 iterations
10/01/2012 01:47:45 : INFO  : Finished PSI-BLAST
10/01/2012 01:47:49 : INFO  : Running Buildali to generate a3m file
10/01/2012 02:07:46 : INFO  : Converting to HMM
10/01/2012 02:08:15 : INFO  : Calibrating HMM
10/01/2012 02:08:41 : INFO  : Searching HMM database
10/01/2012 02:20:10 : INFO  : Finished buildali
10/01/2012 02:20:12 : INFO  : Predicting secondary structure
10/01/2012 02:20:23 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 02:20:26 : INFO  : Predicting Disordered regions
10/01/2012 02:20:32 : INFO  : Predicted Disorder (Disopred)
10/01/2012 02:20:34 : INFO  : Running memsat_svm check
10/01/2012 02:26:37 : INFO  : Running memsat_svm full
10/01/2012 02:29:26 : INFO  : Predicted Transmembrane (memsat_svm) ID '7ab94dcfc59d0b78'
10/01/2012 02:29:28 : INFO  : Initialising fold library search
10/01/2012 02:29:33 : INFO  : Initialised search input
10/01/2012 02:29:36 : INFO  : Building Ensemble models
10/01/2012 02:29:41 : INFO  : Building hh.c3k1dA_.model.1.pdb
10/01/2012 02:30:05 : INFO  : Building c3k1dA_.1.pdb
10/01/2012 02:30:26 : INFO  : Building c1m7xC_.2.pdb
10/01/2012 02:30:47 : INFO  : Building c3amlA_.3.pdb
10/01/2012 02:31:09 : INFO  : Building c3amkA_.4.pdb
10/01/2012 02:31:30 : INFO  : Building c2e8yA_.5.pdb
10/01/2012 02:31:51 : INFO  : Building c1bf2A_.6.pdb
10/01/2012 02:32:13 : INFO  : Building c2fhfA_.7.pdb
10/01/2012 02:32:34 : INFO  : Building c3faxA_.8.pdb
10/01/2012 02:32:55 : INFO  : Building c2ya1A_.9.pdb
10/01/2012 02:33:17 : INFO  : Building c2x4bA_.10.pdb
10/01/2012 02:33:39 : INFO  : Building c2ya0A_.11.pdb
10/01/2012 02:34:01 : INFO  : Building c2wanA_.12.pdb
10/01/2012 02:34:23 : INFO  : Building c2vncB_.13.pdb
10/01/2012 02:34:44 : INFO  : Building c2by0A_.14.pdb
10/01/2012 02:35:05 : INFO  : Building c2wskA_.15.pdb
10/01/2012 02:35:27 : INFO  : Building c3m07A_.16.pdb
10/01/2012 02:35:50 : INFO  : Building c1ehaA_.17.pdb
10/01/2012 02:36:10 : INFO  : Building c1ea9D_.18.pdb
10/01/2012 02:36:31 : INFO  : Building c1gviA_.19.pdb
10/01/2012 02:36:51 : INFO  : Building c1jibA_.20.pdb
10/01/2012 02:37:36 : INFO  : Finished HH model building
10/01/2012 02:37:38 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 02:38:39 : INFO  : html domain output complete ID '7ab94dcfc59d0b78'
10/01/2012 11:32:45 : INFO  : Run end  : Tue Jan 10 11:32:43 GMT 2012
