Phyre 2 Results for P08203

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Email | l.a.kelley@imperial.ac.uk
Description | P08203
Date | Thu Jan 5 11:00:57 GMT 2012
Unique Job ID | 7a9f8f4658fb6872

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1k0wa_
Top template information
Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
223 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | L | E | D | L | K | R | Q | V | L | E | A | N | L | A | L | P | K | H | N | L | V | T | L | T | W | G | N | V | S | A | V | D | R | E | R | G | V | F | V | I | K | P | S | G | V | D | Y | S | V | M | T | A | D | D | M | V | V | V | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | E | T | G | E | V | V | E | G | T | K | K | P | S | S | D | T | P | T | H | R | L | L | Y | Q | A | F | P | S | I | G | G | I | V | H | T | H | S | R | H | A | T | I | W | A | Q | A | G | Q | S | I | P | A | T | G | T | T | H | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Y | F | Y | G | T | I | P | C | T | R | K | M | T | D | A | E | I | N | G | E | Y | E | W | E | T | G | N | V | I | V | E | T | F | E | K | Q | G | I | D | A | A | Q | M | P | G | V | L | V | H | S | H | G | P | F | A | W | G | K | N | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | .
Sequence |  | E | D | A | V | H | N | A | I | V | L | E | E | V | A | Y | M | G | I | F | C | R | Q | L | A | P | Q | L | P | D | M | Q | Q | T | L | L | D | K | H | Y | L | R | K | H | G | A | K | A | Y | Y | G | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1k0wa_ |

### PDB 1k0w chain A

Region: 1 - 223
Aligned: 223
Modelled: 223
Confidence: 100.0%
Identity: 98%
Fold: AraD/HMP-PK domain-like
Superfamily: AraD/HMP-PK domain-like
Family: AraD-like aldolase/epimerase

Phyre2
2 |
| c3ocrA_ |

### PDB 3ocr chain A

Region: 3 - 230
Aligned: 214
Modelled: 228
Confidence: 100.0%
Identity: 16%
PDB header:lyase
Chain: A: PDB Molecule:class ii aldolase/adducin domain protein;
PDBTitle: crystal structure of aldolase ii superfamily protein from pseudomonas2 syringae

Phyre2
3 |
| d1e4cp_ |

### PDB 1e4c chain P

Region: 3 - 222
Aligned: 203
Modelled: 218
Confidence: 100.0%
Identity: 26%
Fold: AraD/HMP-PK domain-like
Superfamily: AraD/HMP-PK domain-like
Family: AraD-like aldolase/epimerase

Phyre2
4 |
| d1ojra_ |

### PDB 1ojr chain A

Region: 4 - 226
Aligned: 209
Modelled: 223
Confidence: 100.0%
Identity: 15%
Fold: AraD/HMP-PK domain-like
Superfamily: AraD/HMP-PK domain-like
Family: AraD-like aldolase/epimerase

Phyre2
5 |
| c2z7bA_ |

### PDB 2z7b chain A

Region: 3 - 217
Aligned: 204
Modelled: 215
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:mlr6791 protein;
PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase

Phyre2
6 |
| c2opiB_ |

### PDB 2opi chain B

Region: 3 - 220
Aligned: 202
Modelled: 216
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase;
PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron

Phyre2
7 |
| d1pvta_ |

### PDB 1pvt chain A

Region: 3 - 209
Aligned: 194
Modelled: 207
Confidence: 100.0%
Identity: 25%
Fold: AraD/HMP-PK domain-like
Superfamily: AraD/HMP-PK domain-like
Family: AraD-like aldolase/epimerase

Phyre2
8 |
| c2irpA_ |

### PDB 2irp chain A

Region: 2 - 203
Aligned: 198
Modelled: 202
Confidence: 100.0%
Identity: 23%
PDB header:lyase
Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979;
PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5

Phyre2
9 |
| c2fk5B_ |

### PDB 2fk5 chain B

Region: 3 - 208
Aligned: 186
Modelled: 203
Confidence: 100.0%
Identity: 25%
PDB header:lyase
Chain: B: PDB Molecule:fuculose-1-phosphate aldolase;
PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8

Phyre2
10 |
| c3m4rA_ |

### PDB 3m4r chain A

Region: 5 - 198
Aligned: 170
Modelled: 194
Confidence: 100.0%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the n-terminal class ii aldolase domain of a conserved2 protein from thermoplasma acidophilum

Phyre2
11 |
| c2yztA_ |

### PDB 2yzt chain A

Region: 165 - 190
Aligned: 26
Modelled: 26
Confidence: 35.6%
Identity: 8%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha1756;
PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8

Phyre2
12 |
| d1j5ua_ |

### PDB 1j5u chain A

Region: 172 - 190
Aligned: 19
Modelled: 19
Confidence: 23.2%
Identity: 16%
Fold: MTH1598-like
Superfamily: MTH1598-like
Family: MTH1598-like

Phyre2
13 |
| c2cfuA_ |

### PDB 2cfu chain A

Region: 146 - 231
Aligned: 81
Modelled: 86
Confidence: 20.2%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.

Phyre2
14 |
| c3euhF_ |

### PDB 3euh chain F

Region: 3 - 44
Aligned: 35
Modelled: 42
Confidence: 18.1%
Identity: 20%
PDB header:cell cycle
Chain: F: PDB Molecule:muke;
PDBTitle: crystal structure of the muke-mukf complex

Phyre2
15 |
| d1jw3a_ |

### PDB 1jw3 chain A

Region: 172 - 190
Aligned: 19
Modelled: 19
Confidence: 16.9%
Identity: 32%
Fold: MTH1598-like
Superfamily: MTH1598-like
Family: MTH1598-like

Phyre2
16 |
| c2yz3B_ |

### PDB 2yz3 chain B

Region: 27 - 98
Aligned: 72
Modelled: 72
Confidence: 10.0%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor

Phyre2
17 |
| d3e9va1 |

### PDB 3e9v chain A domain 1

Region: 21 - 41
Aligned: 19
Modelled: 19
Confidence: 9.6%
Identity: 26%
Fold: BTG domain-like
Superfamily: BTG domain-like
Family: BTG domain-like

Phyre2
18 |
| c2w3pB_ |

### PDB 2w3p chain B

Region: 139 - 182
Aligned: 44
Modelled: 44
Confidence: 8.5%
Identity: 11%
PDB header:lyase
Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase;
PDBTitle: boxc crystal structure

Phyre2
19 |
| c7mdhA_ |

### PDB 7mdh chain A

Region: 41 - 172
Aligned: 111
Modelled: 113
Confidence: 8.0%
Identity: 9%
PDB header:chloroplastic malate dehydrogenase
Chain: A: PDB Molecule:protein (malate dehydrogenase);
PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form

Phyre2
20 |
| c3da4B_ |

### PDB 3da4 chain B

Region: 21 - 45
Aligned: 23
Modelled: 25
Confidence: 7.7%
Identity: 22%
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-m;
PDBTitle: crystal structure of colicin m, a novel phosphatase2 specifically imported by escherichia coli

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1k0wa_ |
|  | 100.0 | 98 | Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase
2 | c3ocrA_ |
|  | 100.0 | 16 | PDB header:lyase Chain: A: PDB Molecule:class ii aldolase/adducin domain protein; PDBTitle: crystal structure of aldolase ii superfamily protein from pseudomonas2 syringae
3 | d1e4cp_ |
|  | 100.0 | 26 | Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase
4 | d1ojra_ |
|  | 100.0 | 15 | Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase
5 | c2z7bA_ |
|  | 100.0 | 18 | PDB header:lyase Chain: A: PDB Molecule:mlr6791 protein; PDBTitle: crystal structure of mesorhizobium loti 3-hydroxy-2-methylpyridine-4,2 5-dicarboxylate decarboxylase
6 | c2opiB_ |
|  | 100.0 | 17 | PDB header:lyase Chain: B: PDB Molecule:l-fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from bacteroides2 thetaiotaomicron
7 | d1pvta_ |
|  | 100.0 | 25 | Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase
8 | c2irpA_ |
|  | 100.0 | 23 | PDB header:lyase Chain: A: PDB Molecule:putative aldolase class 2 protein aq_1979; PDBTitle: crystal structure of the l-fuculose-1-phosphate aldolase (aq_1979)2 from aquifex aeolicus vf5
9 | c2fk5B_ |
|  | 100.0 | 25 | PDB header:lyase Chain: B: PDB Molecule:fuculose-1-phosphate aldolase; PDBTitle: crystal structure of l-fuculose-1-phosphate aldolase from thermus2 thermophilus hb8
10 | c3m4rA_ |
|  | 100.0 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of the n-terminal class ii aldolase domain of a conserved2 protein from thermoplasma acidophilum
11 | c2yztA_ |
|  | 35.6 | 8 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8
12 | d1j5ua_ |
|  | 23.2 | 16 | Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like
13 | c2cfuA_ |
|  | 20.2 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.
14 | c3euhF_ |
|  | 18.1 | 20 | PDB header:cell cycle Chain: F: PDB Molecule:muke; PDBTitle: crystal structure of the muke-mukf complex
15 | d1jw3a_ |
|  | 16.9 | 32 | Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like
16 | c2yz3B_ |
|  | 10.0 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor
17 | d3e9va1 |
|  | 9.6 | 26 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
18 | c2w3pB_ |
|  | 8.5 | 11 | PDB header:lyase Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase; PDBTitle: boxc crystal structure
19 | c7mdhA_ |
|  | 8.0 | 9 | PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form
20 | c3da4B_ |
|  | 7.7 | 22 | PDB header:antibiotic Chain: B: PDB Molecule:colicin-m; PDBTitle: crystal structure of colicin m, a novel phosphatase2 specifically imported by escherichia coli
21 | c1b8vA_ |
| not modelled | 7.7 | 7 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum
22 | d1w96c1 |
| not modelled | 7.1 | 28 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
23 | c3ikbB_ |
| not modelled | 6.7 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.
24 | d1q0qa3 |
| not modelled | 6.7 | 16 | Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like
25 | d1r0ka3 |
| not modelled | 6.6 | 21 | Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like
26 | d1a9xa5 |
| not modelled | 6.5 | 17 | Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:BC ATP-binding domain-like
27 | d1ulza1 |
| not modelled | 5.9 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
28 | c2atmA_ |
| not modelled | 5.9 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure of the recombinant allergen ves v 2
29 | d2z15a1 |
| not modelled | 5.8 | 17 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
30 | d2j9ga1 |
| not modelled | 5.6 | 17 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
31 | c1gph1_ |
| not modelled | 5.6 | 10 | PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis
32 | c3q2oB_ |
| not modelled | 5.4 | 30 | PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
33 | d2cfua2 |
| not modelled | 5.4 | 8 | Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like
34 | c1fcuA_ |
| not modelled | 5.4 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase
35 | d1k75a_ |
| not modelled | 5.4 | 10 | Fold:ALDH-like Superfamily:ALDH-like Family:L-histidinol dehydrogenase HisD
36 | c1k5hB_ |
| not modelled | 5.3 | 12 | PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase
37 | c3pqeD_ |
| not modelled | 5.3 | 12 | PDB header:oxidoreductase Chain: D: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation
38 | d1y67a2 |
| not modelled | 5.2 | 10 | Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
39 | c1gn4B_ |
| not modelled | 5.2 | 7 | PDB header:oxidoreductase Chain: B: PDB Molecule:superoxide dismutase; PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0