BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (276 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39374 Uncharacterized protein yjiC n=50 Tax=Enterobact... 574 e-162 UniRef50_P39308 Uncharacterized protein yjfZ n=28 Tax=Enterobact... 176 1e-42 >UniRef50_P39374 Uncharacterized protein yjiC n=50 Tax=Enterobacteriaceae RepID=YJIC_ECOLI Length = 276 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/276 (100%), Positives = 276/276 (100%) Query: 1 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS 60 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS Sbjct: 1 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS 60 Query: 61 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT 120 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT Sbjct: 61 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT 120 Query: 121 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN 180 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN Sbjct: 121 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN 180 Query: 181 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK 240 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK Sbjct: 181 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK 240 Query: 241 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK 276 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK Sbjct: 241 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK 276 >UniRef50_P39308 Uncharacterized protein yjfZ n=28 Tax=Enterobacteriaceae RepID=YJFZ_ECOLI Length = 264 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 50 RGNNHNYDGKSVVEIRKLDISKEPW-PFNYVTGACRESDGITTTGRMLYRNLKITSALDE 108 RG +HN DG+ VEI KLD+S W FN + C DGIT G + + LD Sbjct: 40 RGRDHNCDGRRTVEIHKLDLSD--WQAFNKLATRCNAYDGITMNGDNSF-GWNHEATLDN 96 Query: 109 IYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYIS 168 I+ KA+A L L+ L F+P YT+HE+ LGPG P Y G TIGY+ Sbjct: 97 IHAQKYNKAYAGARLTAELKYLLQDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVV 156 Query: 169 TLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYP 228 TLPA W++E P ID+YIDQ+ TVTGV+N+ GF +AALLNA +L +D IG+ + Sbjct: 157 TLPAQMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLS 216 Query: 229 GTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYI 274 +A I++ +G++ +P + + RM L P++ P+L+ +NGEW Y+ Sbjct: 217 SSAAIYSGLGFERVPQERDISCARMYLTPANHPDLWTQENGEWIYL 262 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39374 Uncharacterized protein yjiC n=50 Tax=Enterobact... 513 e-144 UniRef50_P39308 Uncharacterized protein yjfZ n=28 Tax=Enterobact... 395 e-109 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P39374 Uncharacterized protein yjiC n=50 Tax=Enterobacteriaceae RepID=YJIC_ECOLI Length = 276 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 276/276 (100%), Positives = 276/276 (100%) Query: 1 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS 60 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS Sbjct: 1 MSMPLSNALQSQIITDAHFLHHPIVDSEFTRKLKYARMDSENIYLPPLTRGNNHNYDGKS 60 Query: 61 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT 120 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT Sbjct: 61 VVEIRKLDISKEPWPFNYVTGACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAT 120 Query: 121 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN 180 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN Sbjct: 121 TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPASQAKRWTN 180 Query: 181 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK 240 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK Sbjct: 181 EQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYPGTAEIHAKMGYK 240 Query: 241 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK 276 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK Sbjct: 241 VIPGDENAPLKRMTLQPSSLPELFELKNGEWNYIGK 276 >UniRef50_P39308 Uncharacterized protein yjfZ n=28 Tax=Enterobacteriaceae RepID=YJFZ_ECOLI Length = 264 Score = 395 bits (1014), Expect = e-109, Method: Composition-based stats. Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 50 RGNNHNYDGKSVVEIRKLDISKEPW-PFNYVTGACRESDGITTTGRMLYRNLKITSALDE 108 RG +HN DG+ VEI KLD+S W FN + C DGIT G + + LD Sbjct: 40 RGRDHNCDGRRTVEIHKLDLSD--WQAFNKLATRCNAYDGITMNGDNSF-GWNHEATLDN 96 Query: 109 IYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYIS 168 I+ KA+A L L+ L F+P YT+HE+ LGPG P Y G TIGY+ Sbjct: 97 IHAQKYNKAYAGARLTAELKYLLQDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVV 156 Query: 169 TLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYP 228 TLPA W++E P ID+YIDQ+ TVTGV+N+ GF +AALLNA +L +D IG+ + Sbjct: 157 TLPAQMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLS 216 Query: 229 GTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYI 274 +A I++ +G++ +P + + RM L P++ P+L+ +NGEW Y+ Sbjct: 217 SSAAIYSGLGFERVPQERDISCARMYLTPANHPDLWTQENGEWIYL 262 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.134 0.391 Lambda K H 0.267 0.0412 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,131,597,599 Number of Sequences: 3077464 Number of extensions: 46622502 Number of successful extensions: 99663 Number of sequences better than 1.0e-01: 2 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99656 Number of HSP's gapped (non-prelim): 4 length of query: 276 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 149 effective length of database: 649,558,428 effective search space: 96784205772 effective search space used: 96784205772 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 92 (40.0 bits)