285 c3fluD_ Probab=60.04   E-value=13  Score=17.53  Aligned_columns=100  Identities=19%

Q ss_pred             HHHHHHHHHCCCCEEEECCCC------CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEC-
Q ss_conf             899999871689899988868------9999999996214788886533332111234675889972287745999719-
Q batch____        81 PVIIKRLLDIGFYNFLIPFVE------TKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIE-  153 (256)
Q Consensus        81 ~~~i~~~Ld~Ga~gIivP~v~------taeea~~~v~a~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IE-  153 (256)
                      ..++.+.++.|++||.+.-..      |.+|-+++.+.+                         .+..++++.+++.+= 
T Consensus        27 ~~~~~~l~~~Gv~gi~~~G~tGE~~~Ls~~Er~~i~~~~-------------------------~~~~~~~~~vi~gv~~   81 (293)
T c3fluD_          27 RDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAV-------------------------VKHVAKRVPVIAGTGA   81 (293)
T ss_dssp             HHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHH-------------------------HHHHTTSSCEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHH-------------------------HHHCCCCCEEEEECCC
T ss_conf             999999997799899987723570217999999999999-------------------------9960899739996588


Q ss_pred             --CHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             --989999899873555388999801167764057577689689999999999999739829997
Q batch____       154 --SQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGIL  216 (256)
Q Consensus       154 --t~~av~n~~eIaavpgvd~i~iG~~DLs~~lG~~~~~~~p~v~~a~~~i~~aa~~~g~~~g~~  216 (256)
                        +.+.++.+....+. |+|++++-|          +.+..+.-...++...+.+.+.++|..++
T Consensus        82 ~~~~~~i~~a~~a~~~-Gad~v~~~p----------P~~~~~s~~~i~~~~~~ia~~~~~pi~~Y  135 (293)
T c3fluD_          82 NNTVEAIALSQAAEKA-GADYTLSVV----------PYYNKPSQEGIYQHFKTIAEATSIPMIIY  135 (293)
T ss_dssp             SSHHHHHHHHHHHHHH-TCSEEEEEC----------CCSSCCCHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHC-CCCEEEECC----------CCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999999854-998999938----------87889998899999999997549989999