Phyre 2 Results for P23522

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P23522
Date | Wed Jan 25 15:20:43 GMT 2012
Unique Job ID | 7a3654253219747a

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1dxea_
Top template information
Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
253 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | N | D | V | F | P | N | K | F | K | A | A | L | A | A | K | Q | V | Q | I | G | C | W | S | A | L | S | N | P | I | S | T | E | V | L | G | L | A | G | F | D | W | L | V | L | D | G | E | H | A | P | N | D | I | S | T | F | I | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Q | L | M | A | L | K | G | S | A | S | A | P | V | V | R | V | P | T | N | E | P | V | I | I | K | R | L | L | D | I | G | F | Y | N | F | L | I | P | F | V | E | T | K | E | E | A | E | L | A | V | A | S | T | R | Y | P | P | E | G | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | G | V | S | V | S | H | R | A | N | M | F | G | T | V | A | D | Y | F | A | Q | S | N | K | N | I | T | I | L | V | Q | I | E | S | Q | Q | G | V | D | N | V | D | A | I | A | A | T | E | G | V | D | G | I | F | V | G | P | S | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | A | A | L | G | H | L | G | N | A | S | H | P | D | V | Q | K | A | I | Q | H | I | F | N | R | A | S | A | H | G | K | P | S | G | I | L | A | P | V | E | A | D | A | R | R | Y | L | E | W | G | A | T | F | V | A | V | G | S | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | .
Sequence |  | G | V | F | R | S | A | T | Q | K | L | A | D | T | F | K | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1dxea_ |

### PDB 1dxe chain A

Region: 4 - 256
Aligned: 253
Modelled: 253
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2
2 |
| c2vwtA_ |

### PDB 2vwt chain A

Region: 3 - 255
Aligned: 253
Modelled: 253
Confidence: 100.0%
Identity: 43%
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex

Phyre2
3 |
| c2v5jB_ |

### PDB 2v5j chain B

Region: 6 - 255
Aligned: 250
Modelled: 250
Confidence: 100.0%
Identity: 47%
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch

Phyre2
4 |
| c1izcA_ |

### PDB 1izc chain A

Region: 8 - 256
Aligned: 249
Modelled: 249
Confidence: 100.0%
Identity: 28%
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase

Phyre2
5 |
| d1izca_ |

### PDB 1izc chain A

Region: 8 - 256
Aligned: 249
Modelled: 249
Confidence: 100.0%
Identity: 28%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2
6 |
| c3qz6A_ |

### PDB 3qz6 chain A

Region: 10 - 256
Aligned: 247
Modelled: 236
Confidence: 100.0%
Identity: 30%
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2

Phyre2
7 |
| c1sgjB_ |

### PDB 1sgj chain B

Region: 23 - 232
Aligned: 184
Modelled: 184
Confidence: 100.0%
Identity: 22%
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase, beta subunit;
PDBTitle: crystal structure of citrate lyase beta subunit

Phyre2
8 |
| d1sgja_ |

### PDB 1sgj chain A

Region: 23 - 232
Aligned: 184
Modelled: 184
Confidence: 100.0%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2
9 |
| d1u5ha_ |

### PDB 1u5h chain A

Region: 23 - 247
Aligned: 190
Modelled: 191
Confidence: 100.0%
Identity: 22%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: HpcH/HpaI aldolase

Phyre2
10 |
| c1u5vA_ |

### PDB 1u5v chain A

Region: 23 - 232
Aligned: 175
Modelled: 176
Confidence: 100.0%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:cite;
PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis

Phyre2
11 |
| d1e0ta2 |

### PDB 1e0t chain A domain 2

Region: 14 - 239
Aligned: 193
Modelled: 201
Confidence: 100.0%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2
12 |
| c3qqwC_ |

### PDB 3qqw chain C

Region: 28 - 232
Aligned: 185
Modelled: 185
Confidence: 99.9%
Identity: 18%
PDB header:lyase
Chain: C: PDB Molecule:putative citrate lyase;
PDBTitle: crystal structure of a hypothetical lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution

Phyre2
13 |
| c3qllB_ |

### PDB 3qll chain B

Region: 37 - 232
Aligned: 161
Modelled: 168
Confidence: 99.9%
Identity: 19%
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of ripc from yersinia pestis

Phyre2
14 |
| c3r4iB_ |

### PDB 3r4i chain B

Region: 26 - 232
Aligned: 187
Modelled: 187
Confidence: 99.9%
Identity: 21%
PDB header:lyase
Chain: B: PDB Molecule:citrate lyase;
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution

Phyre2
15 |
| d1liua2 |

### PDB 1liu chain A domain 2

Region: 26 - 241
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2
16 |
| d1pkla2 |

### PDB 1pkl chain A domain 2

Region: 26 - 241
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2
17 |
| d1a3xa2 |

### PDB 1a3x chain A domain 2

Region: 26 - 241
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 24%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2
18 |
| d2g50a2 |

### PDB 2g50 chain A domain 2

Region: 26 - 241
Aligned: 182
Modelled: 190
Confidence: 99.9%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: Phosphoenolpyruvate/pyruvate domain
Family: Pyruvate kinase

Phyre2
19 |
| c3pugA_ |

### PDB 3pug chain A

Region: 23 - 232
Aligned: 191
Modelled: 191
Confidence: 99.8%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate

Phyre2
20 |
| c2hroA_ |

### PDB 2hro chain A

Region: 15 - 247
Aligned: 211
Modelled: 214
Confidence: 99.8%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1dxea_ |
|  | 100.0 | 100 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
2 | c2vwtA_ |
|  | 100.0 | 43 | PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
3 | c2v5jB_ |
|  | 100.0 | 47 | PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch
4 | c1izcA_ |
|  | 100.0 | 28 | PDB header:lyase Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase; PDBTitle: crystal structure analysis of macrophomate synthase
5 | d1izca_ |
|  | 100.0 | 28 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
6 | c3qz6A_ |
|  | 100.0 | 30 | PDB header:lyase Chain: A: PDB Molecule:hpch/hpai aldolase; PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
7 | c1sgjB_ |
|  | 100.0 | 22 | PDB header:lyase Chain: B: PDB Molecule:citrate lyase, beta subunit; PDBTitle: crystal structure of citrate lyase beta subunit
8 | d1sgja_ |
|  | 100.0 | 22 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
9 | d1u5ha_ |
|  | 100.0 | 22 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase
10 | c1u5vA_ |
|  | 100.0 | 21 | PDB header:lyase Chain: A: PDB Molecule:cite; PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis
11 | d1e0ta2 |
|  | 100.0 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
12 | c3qqwC_ |
|  | 99.9 | 18 | PDB header:lyase Chain: C: PDB Molecule:putative citrate lyase; PDBTitle: crystal structure of a hypothetical lyase (reut_b4148) from ralstonia2 eutropha jmp134 at 2.44 a resolution
13 | c3qllB_ |
|  | 99.9 | 19 | PDB header:lyase Chain: B: PDB Molecule:citrate lyase; PDBTitle: crystal structure of ripc from yersinia pestis
14 | c3r4iB_ |
|  | 99.9 | 21 | PDB header:lyase Chain: B: PDB Molecule:citrate lyase; PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution
15 | d1liua2 |
|  | 99.9 | 23 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
16 | d1pkla2 |
|  | 99.9 | 23 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
17 | d1a3xa2 |
|  | 99.9 | 24 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
18 | d2g50a2 |
|  | 99.9 | 25 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase
19 | c3pugA_ |
|  | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate
20 | c2hroA_ |
|  | 99.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
21 | c2hwgA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of phosphorylated enzyme i of the2 phosphoenolpyruvate:sugar phosphotransferase system
22 | c2bg5C_ |
| not modelled | 99.8 | 19 | PDB header:transferase Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase; PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme2 i-domain from the thermoanaerobacter tengcongensis pep:3 sugar phosphotransferase system (pts)
23 | c3cuzA_ |
| not modelled | 99.8 | 22 | PDB header:transferase Chain: A: PDB Molecule:malate synthase a; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
24 | d1vbga1 |
| not modelled | 99.8 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain
25 | d1h6za1 |
| not modelled | 99.8 | 20 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain
26 | c3cuxA_ |
| not modelled | 99.8 | 22 | PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
27 | d1kbla1 |
| not modelled | 99.8 | 21 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate phosphate dikinase, C-terminal domain
28 | c1h6zA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei
29 | c2olsA_ |
| not modelled | 99.7 | 20 | PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate synthase; PDBTitle: the crystal structure of the phosphoenolpyruvate synthase from2 neisseria meningitidis
30 | c1kblA_ |
| not modelled | 99.7 | 19 | PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: pyruvate phosphate dikinase
31 | c1vbhA_ |
| not modelled | 99.7 | 15 | PDB header:transferase Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
32 | c3khdC_ |
| not modelled | 99.6 | 18 | PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pff1300w.
33 | c3e0vB_ |
| not modelled | 99.5 | 27 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions
34 | c1t5aB_ |
| not modelled | 99.5 | 25 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2
35 | c1pklB_ |
| not modelled | 99.5 | 27 | PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase
36 | c1e0tD_ |
| not modelled | 99.5 | 21 | PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase
37 | c2vgbB_ |
| not modelled | 99.5 | 25 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase isozymes r/l; PDBTitle: human erythrocyte pyruvate kinase
38 | c1aqfB_ |
| not modelled | 99.4 | 26 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate
39 | c3t07D_ |
| not modelled | 99.4 | 22 | PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid
40 | c2e28A_ |
| not modelled | 99.4 | 22 | PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus
41 | c1a3wB_ |
| not modelled | 99.4 | 24 | PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from saccharomyces cerevisiae complexed with fbp, pg,2 mn2+ and k+
42 | c3eoeC_ |
| not modelled | 99.4 | 25 | PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
43 | c3ma8A_ |
| not modelled | 99.3 | 24 | PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum
44 | c3odmE_ |
| not modelled | 98.4 | 17 | PDB header:lyase Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: archaeal-type phosphoenolpyruvate carboxylase
45 | d1qopa_ |
| not modelled | 98.2 | 18 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
46 | d1vhca_ |
| not modelled | 98.2 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
47 | d1rd5a_ |
| not modelled | 98.2 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
48 | d1rpxa_ |
| not modelled | 98.1 | 11 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
49 | c3inpA_ |
| not modelled | 98.0 | 12 | PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis.
50 | d2flia1 |
| not modelled | 98.0 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
51 | c2qiwA_ |
| not modelled | 98.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution
52 | d1xi3a_ |
| not modelled | 97.9 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase
53 | d1h1ya_ |
| not modelled | 97.9 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
54 | c3eooL_ |
| not modelled | 97.8 | 15 | PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei
55 | d1xcfa_ |
| not modelled | 97.8 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
56 | c1zfjA_ |
| not modelled | 97.8 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
57 | c1zlpA_ |
| not modelled | 97.8 | 17 | PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct
58 | d1wbha1 |
| not modelled | 97.8 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
59 | d1tqxa_ |
| not modelled | 97.7 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
60 | c2c3zA_ |
| not modelled | 97.7 | 17 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
61 | c3navB_ |
| not modelled | 97.7 | 20 | PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961
62 | c2hjpA_ |
| not modelled | 97.7 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:phosphonopyruvate hydrolase; PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++
63 | c2ekcA_ |
| not modelled | 97.7 | 18 | PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
64 | c3qc3B_ |
| not modelled | 97.6 | 16 | PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution
65 | c3igsB_ |
| not modelled | 97.6 | 18 | PDB header:isomerase Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2; PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
66 | c1yadD_ |
| not modelled | 97.5 | 18 | PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis
67 | d2tpsa_ |
| not modelled | 97.5 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase
68 | c3ih1A_ |
| not modelled | 97.5 | 13 | PDB header:lyase Chain: A: PDB Molecule:methylisocitrate lyase; PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis
69 | c3ct7E_ |
| not modelled | 97.5 | 17 | PDB header:isomerase Chain: E: PDB Molecule:d-allulose-6-phosphate 3-epimerase; PDBTitle: crystal structure of d-allulose 6-phosphate 3-epimerase2 from escherichia coli k-12
70 | d1mxsa_ |
| not modelled | 97.5 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
71 | c3b8iF_ |
| not modelled | 97.5 | 21 | PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+.
72 | d1muma_ |
| not modelled | 97.4 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
73 | d1d8ca_ |
| not modelled | 97.4 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Malate synthase G Family:Malate synthase G
74 | c3fa4D_ |
| not modelled | 97.4 | 17 | PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form
75 | c3o63B_ |
| not modelled | 97.4 | 22 | PDB header:transferase Chain: B: PDB Molecule:probable thiamine-phosphate pyrophosphorylase; PDBTitle: crystal structure of thiamin phosphate synthase from mycobacterium2 tuberculosis
76 | d1tqja_ |
| not modelled | 97.4 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase
77 | c2ze3A_ |
| not modelled | 97.3 | 21 | PDB header:isomerase Chain: A: PDB Molecule:dfa0005; PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus
78 | c3qjaA_ |
| not modelled | 97.3 | 21 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
79 | d1wa3a1 |
| not modelled | 97.2 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase
80 | c3lyeA_ |
| not modelled | 97.2 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase; PDBTitle: crystal structure of oxaloacetate acetylhydrolase
81 | d1ujqa_ |
| not modelled | 97.2 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
82 | d1yxya1 |
| not modelled | 97.1 | 13 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like
83 | d1s2wa_ |
| not modelled | 97.1 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
84 | d1n8ia_ |
| not modelled | 97.1 | 21 | Fold:TIM beta/alpha-barrel Superfamily:Malate synthase G Family:Malate synthase G
85 | d1jqna_ |
| not modelled | 97.1 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase
86 | c3q58A_ |
| not modelled | 96.9 | 17 | PDB header:isomerase Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase; PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
87 | d1jqoa_ |
| not modelled | 96.9 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase
88 | c1jqoA_ |
| not modelled | 96.9 | 15 | PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
89 | c2v82A_ |
| not modelled | 96.8 | 18 | PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal
90 | d1i4na_ |
| not modelled | 96.6 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
91 | d1vc4a_ |
| not modelled | 96.6 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
92 | d1j5ta_ |
| not modelled | 96.4 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
93 | d1y0ea_ |
| not modelled | 96.4 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like
94 | d2p10a1 |
| not modelled | 96.2 | 20 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like
95 | c2p10D_ |
| not modelled | 96.2 | 19 | PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
96 | d1a53a_ |
| not modelled | 95.9 | 17 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
97 | c1piiA_ |
| not modelled | 95.8 | 15 | PDB header:bifunctional(isomerase and synthase) Chain: A: PDB Molecule:n-(5'phosphoribosyl)anthranilate isomerase; PDBTitle: three-dimensional structure of the bifunctional enzyme2 phosphoribosylanthranilate isomerase:3 indoleglycerolphosphate synthase from escherichia coli4 refined at 2.0 angstroms resolution
98 | d1zfja1 |
| not modelled | 95.6 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH)
99 | c3labA_ |
| not modelled | 95.5 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica
100 | c3ez4B_ |
| not modelled | 95.4 | 15 | PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei
101 | c3cu2A_ |
| not modelled | 94.9 | 13 | PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution
102 | c2yw3E_ |
| not modelled | 94.9 | 24 | PDB header:lyase Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1
103 | c2z6jB_ |
| not modelled | 94.7 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:trans-2-enoyl-acp reductase ii; PDBTitle: crystal structure of s. pneumoniae enoyl-acyl carrier2 protein reductase (fabk) in complex with an inhibitor
104 | d1h5ya_ |
| not modelled | 94.6 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
105 | d1w0ma_ |
| not modelled | 94.6 | 18 | Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM)
106 | d1mvoa_ |
| not modelled | 94.5 | 14 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
107 | d1dz3a_ |
| not modelled | 94.5 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
108 | c1znnF_ |
| not modelled | 94.3 | 12 | PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase
109 | c3thaB_ |
| not modelled | 94.1 | 23 | PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni.
110 | d1o4ua1 |
| not modelled | 93.8 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like
111 | c3khjE_ |
| not modelled | 93.7 | 19 | PDB header:oxidoreductase Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
112 | c3f4wA_ |
| not modelled | 93.5 | 12 | PDB header:synthase, lyase Chain: A: PDB Molecule:putative hexulose 6 phosphate synthase; PDBTitle: the 1.65a crystal structure of 3-hexulose-6-phosphate2 synthase from salmonella typhimurium
113 | c1o4uA_ |
| not modelled | 93.4 | 16 | PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
114 | d1a2oa1 |
| not modelled | 93.2 | 17 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
115 | d1q6oa_ |
| not modelled | 93.0 | 9 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase
116 | d1znna1 |
| not modelled | 93.0 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like
117 | d1ujpa_ |
| not modelled | 92.9 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
118 | d1oy0a_ |
| not modelled | 92.9 | 16 | Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB
119 | d1piia2 |
| not modelled | 92.7 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
120 | c2bdqA_ |
| not modelled | 92.5 | 17 | PDB header:metal transport Chain: A: PDB Molecule:copper homeostasis protein cutc; PDBTitle: crystal structure of the putative copper homeostasis2 protein cutc from streptococcus agalactiae, northeast3 strucural genomics target sar15.

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0