43 d3prna_ Probab=91.80   E-value=0.68  Score=22.58  Aligned_columns=161  Identities=14%

Q ss_pred             CCCCCEEEEEEEEECCCCEEEEEEECCEECCCCCEEEEEEEEEEEECCCEEEEEEEEECCCCCCCEEEEEEEEEEECCEE
Q ss_conf             76664268995000587627998621220389741688999999817720578885303212862367885155205157
Q batch____       198 SLKNSQFDFLHPWYETPDNLFFSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYLK  277 (2358)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~~~n~g~~~r~~~~~~~~g~n~f~d~~~~~~~~r~~~g~e~~~~~~~  277 (2358)
                      ...++.+-+-..|..=+-.+-+..-.--..+++..-..+++..+-...+.+++---..+.-........+|+.|....++
T Consensus       127 ~~~~~~~y~s~~~~Gf~~~asy~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~~y~~~~~~~~~~~~~~~g~~y~~~~~~  206 (289)
T d3prna_         127 LDNYNGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAG  206 (289)
T ss_dssp             TTTCEEEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSE
T ss_pred             CCCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCEE
T ss_conf             22441899842207749999940588775666665068999981356549999985114677764136777678622227


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCEEECCCCCCCCCCCCEEEEEEEEC
Q ss_conf             75213205787546512343211578875146003115656543607889987466010127986545742589835312
Q batch____       278 LSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYT  357 (2358)
Q Consensus       278 ~~~n~y~~~~~w~~~~~~~~~~~~~~a~g~d~~~~~~~~~~p~l~~~~~~~~~~g~~v~~f~~~~~~~~p~~~~~g~~~~  357 (2358)
                      +++                                             +|++..++..          +...+.+|+.|+
T Consensus       207 ~~~---------------------------------------------~~~~~~~~~~----------~~~~~~lg~~Y~  231 (289)
T d3prna_         207 TVG---------------------------------------------LNWYDNGLST----------AGDQVTLYGNYA  231 (289)
T ss_dssp             EEE---------------------------------------------EEEEECTTST----------TCSEEEEEEEEE
T ss_pred             EEE---------------------------------------------EEECCCCCCC----------CCEEEEEEEEEE
T ss_conf             888---------------------------------------------8522456777----------630699999999


Q ss_pred             CCCEEEECHHHEECCCCCCCEEEEEEEEECCCCC--HHHHCCHHHHHCCHHHHHCCHHH
Q ss_conf             5322847123222348775317999999708889--77872853200011011042234
Q batch____       358 PFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSA--MQKQLDPNEVAARRSLAGSRYDL  414 (2358)
Q Consensus       358 p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~r~~~  414 (2358)
                      -=| +++.+-+.+.+....++.+.|+..|.|+..  |..++........|--.|-||+|
T Consensus       232 ~g~-~t~~a~y~~~~~d~~~~~~~lg~~Y~l~~~~~l~~~~g~~~~~~t~a~~Gv~~~F  289 (289)
T d3prna_         232 FGA-TTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETVADVGVRFDF  289 (289)
T ss_dssp             ETT-EEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEEC
T ss_pred             ECC-EEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEC
T ss_conf             167-0999999961246642169999999568757999998741577507898799879