17/01/2012 03:52:11 : INFO  : Run start: Tue Jan 17 03:52:08 GMT 2012
17/01/2012 03:52:22 : INFO  : Initialised job
17/01/2012 03:52:25 : INFO  : Renaming log file 'phyre2_20120117_035207.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/phyre_20120117_035207.log'
17/01/2012 03:52:29 : INFO  : Initialised job:
Sequence
>batch____
MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGLILAQLKALGWTDNSTT
ATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASMVVGAFSPNMDFLIACRFV
MGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNW
RVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPV
VIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINLKD
SIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAVLGYIYSLQTSMLLITLIGF
FLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSSYGVTG
VFILLGAVSIIVAIAIATIGIETKGVSVESLSIDAVANK

17/01/2012 03:52:31 : INFO  : Checked sequence
17/01/2012 03:52:37 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 03:52:39 : INFO  : PSI-BLAST 3 iterations
17/01/2012 03:56:59 : INFO  : PSI-BLAST 5 iterations
17/01/2012 04:03:37 : INFO  : Finished PSI-BLAST
17/01/2012 04:03:41 : INFO  : Running Buildali to generate a3m file
17/01/2012 05:40:34 : INFO  : Converting to HMM
17/01/2012 05:42:34 : INFO  : Calibrating HMM
17/01/2012 05:43:02 : INFO  : Searching HMM database
17/01/2012 05:52:36 : INFO  : Finished buildali
17/01/2012 05:52:39 : INFO  : Predicting secondary structure
17/01/2012 05:52:54 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 05:52:57 : INFO  : Predicting Disordered regions
17/01/2012 05:53:07 : INFO  : Predicted Disorder (Disopred)
17/01/2012 05:53:10 : INFO  : Running memsat_svm check
17/01/2012 05:59:42 : INFO  : Running memsat_svm full
17/01/2012 06:01:52 : INFO  : Predicted Transmembrane (memsat_svm) ID '79c44b016a11e66c'
17/01/2012 06:01:56 : INFO  : Initialising fold library search
17/01/2012 06:02:02 : INFO  : Initialised search input
17/01/2012 06:02:08 : INFO  : Building Ensemble models
17/01/2012 06:02:13 : INFO  : Building hh.d1pw4a_.model.1.pdb
17/01/2012 06:02:39 : INFO  : Building hh.d1pv7a_.model.2.pdb
17/01/2012 06:03:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/hh.d1pv7a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/d1pv7a_.2.pdb
17/01/2012 06:03:08 : INFO  : Building hh.c3o7pA_.model.3.pdb
17/01/2012 06:03:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/hh.c3o7pA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/c3o7pA_.3.pdb
17/01/2012 06:03:38 : INFO  : Building hh.c2gfpA_.model.4.pdb
17/01/2012 06:04:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/hh.c2gfpA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/79c44b016a11e66c/c2gfpA_.4.pdb
17/01/2012 06:04:07 : INFO  : Building d1pw4a_.1.pdb
17/01/2012 06:04:34 : INFO  : Building d1pv7a_.2.pdb
17/01/2012 06:05:01 : INFO  : Building c3o7pA_.3.pdb
17/01/2012 06:05:27 : INFO  : Building c2gfpA_.4.pdb
17/01/2012 06:05:54 : INFO  : Building c2xutC_.5.pdb
17/01/2012 06:06:21 : INFO  : Building c3qnqD_.6.pdb
17/01/2012 06:06:46 : INFO  : Building c1mv4B_.7.pdb
17/01/2012 06:07:11 : INFO  : Building c2g9pA_.8.pdb
17/01/2012 06:07:37 : INFO  : Building d1cwpa_.9.pdb
17/01/2012 06:08:04 : INFO  : Building c1cwpB_.10.pdb
17/01/2012 06:08:29 : INFO  : Building c1yewC_.11.pdb
17/01/2012 06:08:56 : INFO  : Building c2qfaC_.12.pdb
17/01/2012 06:09:19 : INFO  : Building c1by0A_.13.pdb
17/01/2012 06:09:44 : INFO  : Building d1ofcx1.14.pdb
17/01/2012 06:10:11 : INFO  : Building c3mmyF_.15.pdb
17/01/2012 06:10:37 : INFO  : Building c3chxG_.16.pdb
17/01/2012 06:11:02 : INFO  : Building c1ymgA_.17.pdb
17/01/2012 06:11:27 : INFO  : Building d1ymga1.18.pdb
17/01/2012 06:11:51 : INFO  : Building d1fs1b1.19.pdb
17/01/2012 06:12:19 : INFO  : Building c3c9pA_.20.pdb
17/01/2012 06:14:44 : INFO  : Finished HH model building
17/01/2012 06:14:48 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 06:16:04 : INFO  : html domain output complete ID '79c44b016a11e66c'
17/01/2012 06:43:07 : INFO  : Run end  : Tue Jan 17 06:43:06 GMT 2012
