Phyre 2 Results for P76230

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Email | l.a.kelley@imperial.ac.uk
Description | P76230
Date | Thu Jan 5 12:20:56 GMT 2012
Unique Job ID | 79c44b016a11e66c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1pw4a_
Top template information
Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter
Confidence and coverage
Confidence: | 100.0% | Coverage: | 92%
422 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | E | Q | I | T | K | P | H | C | G | A | R | L | D | R | L | P | D | C | R | W | H | S | S | M | F | A | I | V | A | F | G | L | L | V | C | W | S | N | A | V | G | G | L | I | L | A | Q | L | K | A | L | G | W | T | D | N | S | T | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | T | F | S | A | I | T | T | A | G | M | F | L | G | A | L | V | G | G | I | I | G | D | K | T | G | R | R | N | A | F | I | L | Y | E | A | I | H | I | A | S | M | V | V | G | A | F | S | P | N | M | D | F | L | I | A | C | R | F | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | M | G | V | G | L | G | A | L | L | V | T | L | F | A | G | F | T | E | Y | M | P | G | R | N | R | G | T | W | S | S | R | V | S | F | I | G | N | W | S | Y | P | L | C | S | L | I | A | M | G | L | T | P | L | I | S | A | E | W | N | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | R | V | Q | L | L | I | P | A | I | L | S | L | I | A | T | A | L | A | W | R | Y | F | P | E | S | P | R | W | L | E | S | R | G | R | Y | Q | E | A | E | K | V | M | R | S | I | E | E | G | V | I | R | Q | T | G | K | P | L | P | P | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | I | A | D | D | G | K | A | P | Q | A | V | P | Y | S | A | L | L | T | G | V | L | L | K | R | V | I | L | G | S | C | V | L | I | A | M | N | V | V | Q | Y | T | L | I | N | W | L | P | T | I | F | M | T | Q | G | I | N | L | K | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | I | V | L | N | T | M | S | M | F | G | A | P | F | G | I | F | I | A | M | L | V | M | D | K | I | P | R | K | T | M | G | V | G | L | L | I | L | I | A | V | L | G | Y | I | Y | S | L | Q | T | S | M | L | L | I | T | L | I | G | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | F | L | I | T | F | V | Y | M | Y | V | C | Y | A | S | A | V | Y | V | P | E | I | W | P | T | E | A | K | L | R | G | S | G | L | A | N | A | V | G | R | I | S | G | I | A | A | P | Y | A | V | A | V | L | L | S | S | Y | G | V | T | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | .
Sequence |  | V | F | I | L | L | G | A | V | S | I | I | V | A | I | A | I | A | T | I | G | I | E | T | K | G | V | S | V | E | S | L | S | I | D | A | V | A | N | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1pw4a_ |

### PDB 1pw4 chain A

Region: 4 - 453
Aligned: 422
Modelled: 422
Confidence: 100.0%
Identity: 13%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: Glycerol-3-phosphate transporter

Phyre2
2 |
| d1pv7a_ |

### PDB 1pv7 chain A

Region: 21 - 457
Aligned: 411
Modelled: 411
Confidence: 100.0%
Identity: 12%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: LacY-like proton/sugar symporter

Phyre2
3 |
| c3o7pA_ |

### PDB 3o7p chain A

Region: 26 - 443
Aligned: 404
Modelled: 406
Confidence: 100.0%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)

Phyre2
4 |
| c2gfpA_ |

### PDB 2gfp chain A

Region: 25 - 432
Aligned: 368
Modelled: 373
Confidence: 100.0%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli

Phyre2
5 |
| c2xutC_ |

### PDB 2xut chain C

Region: 27 - 439
Aligned: 412
Modelled: 413
Confidence: 100.0%
Identity: 12%
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.

Phyre2
6 |
| c3qnqD_ |

### PDB 3qnq chain D

Region: 406 - 458
Aligned: 53
Modelled: 53
Confidence: 43.6%
Identity: 15%
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system

Phyre2
7 |
| c1mv4B_ |

### PDB 1mv4 chain B

Region: 445 - 459
Aligned: 15
Modelled: 15
Confidence: 25.6%
Identity: 33%
PDB header:de novo protein
Chain: B: PDB Molecule:tropomyosin 1 alpha chain;
PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin

Phyre2
8 |
| c2g9pA_ |

### PDB 2g9p chain A

Region: 77 - 90
Aligned: 14
Modelled: 14
Confidence: 13.6%
Identity: 29%
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom

Phyre2
9 |
| d1cwpa_ |

### PDB 1cwp chain A

Region: 439 - 456
Aligned: 18
Modelled: 18
Confidence: 12.7%
Identity: 33%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Bromoviridae-like VP

Phyre2
10 |
| c1cwpB_ |

### PDB 1cwp chain B

Region: 439 - 456
Aligned: 18
Modelled: 18
Confidence: 11.3%
Identity: 33%
PDB header:virus/rna
Chain: B: PDB Molecule:coat protein;
PDBTitle: structures of the native and swollen forms of cowpea2 chlorotic mottle virus determined by x-ray crystallography3 and cryo-electron microscopy

Phyre2
11 |
| c1yewC_ |

### PDB 1yew chain C

Region: 418 - 456
Aligned: 39
Modelled: 39
Confidence: 8.3%
Identity: 10%
PDB header:oxidoreductase, membrane protein
Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2;
PDBTitle: crystal structure of particulate methane monooxygenase

Phyre2
12 |
| c2qfaC_ |

### PDB 2qfa chain C

Region: 448 - 457
Aligned: 10
Modelled: 10
Confidence: 8.0%
Identity: 20%
PDB header:cell cycle/cell cycle/cell cycle
Chain: C: PDB Molecule:inner centromere protein;
PDBTitle: crystal structure of a survivin-borealin-incenp core complex

Phyre2
13 |
| c1by0A_ |

### PDB 1by0 chain A

Region: 445 - 455
Aligned: 11
Modelled: 11
Confidence: 7.9%
Identity: 27%
PDB header:rna binding protein
Chain: A: PDB Molecule:protein (hepatitis delta antigen);
PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen

Phyre2
14 |
| d1ofcx1 |

### PDB 1ofc chain X domain 1

Region: 442 - 453
Aligned: 12
Modelled: 12
Confidence: 7.6%
Identity: 17%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Myb/SANT domain

Phyre2
15 |
| c3mmyF_ |

### PDB 3mmy chain F

Region: 439 - 454
Aligned: 16
Modelled: 16
Confidence: 6.6%
Identity: 25%
PDB header:nuclear protein
Chain: F: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1

Phyre2
16 |
| c3chxG_ |

### PDB 3chx chain G

Region: 427 - 456
Aligned: 30
Modelled: 30
Confidence: 6.0%
Identity: 13%
PDB header:membrane protein
Chain: G: PDB Molecule:pmoc;
PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)

Phyre2
17 |
| c1ymgA_ |

### PDB 1ymg chain A

Region: 401 - 450
Aligned: 47
Modelled: 50
Confidence: 5.3%
Identity: 11%
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution

Phyre2
18 |
| d1ymga1 |

### PDB 1ymg chain A domain 1

Region: 401 - 450
Aligned: 47
Modelled: 50
Confidence: 5.3%
Identity: 11%
Fold: Aquaporin-like
Superfamily: Aquaporin-like
Family: Aquaporin-like

Phyre2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1pw4a_ |
|  | 100.0 | 13 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter
2 | d1pv7a_ |
|  | 100.0 | 12 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter
3 | c3o7pA_ |
|  | 100.0 | 11 | PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
4 | c2gfpA_ |
|  | 100.0 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
5 | c2xutC_ |
|  | 100.0 | 12 | PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
6 | c3qnqD_ |
|  | 43.6 | 15 | PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
7 | c1mv4B_ |
|  | 25.6 | 33 | PDB header:de novo protein Chain: B: PDB Molecule:tropomyosin 1 alpha chain; PDBTitle: tm9a251-284: a peptide model of the c-terminus of a rat2 striated alpha tropomyosin
8 | c2g9pA_ |
|  | 13.6 | 29 | PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
9 | d1cwpa_ |
|  | 12.7 | 33 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Bromoviridae-like VP
10 | c1cwpB_ |
|  | 11.3 | 33 | PDB header:virus/rna Chain: B: PDB Molecule:coat protein; PDBTitle: structures of the native and swollen forms of cowpea2 chlorotic mottle virus determined by x-ray crystallography3 and cryo-electron microscopy
11 | c1yewC_ |
|  | 8.3 | 10 | PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase
12 | c2qfaC_ |
|  | 8.0 | 20 | PDB header:cell cycle/cell cycle/cell cycle Chain: C: PDB Molecule:inner centromere protein; PDBTitle: crystal structure of a survivin-borealin-incenp core complex
13 | c1by0A_ |
|  | 7.9 | 27 | PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen
14 | d1ofcx1 |
|  | 7.6 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain
15 | c3mmyF_ |
|  | 6.6 | 25 | PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
16 | c3chxG_ |
|  | 6.0 | 13 | PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo)
17 | c1ymgA_ |
|  | 5.3 | 11 | PDB header:membrane protein Chain: A: PDB Molecule:lens fiber major intrinsic protein; PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
18 | d1ymga1 |
|  | 5.3 | 11 | Fold:Aquaporin-like Superfamily:Aquaporin-like Family:Aquaporin-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0