Phyre 2 alignment of P76230 with c3mmyF_

Return to main results | Retrieve Phyre Job Id

Job Description | P76230
Confidence | 6.56% | Date | Thu Jan 5 12:20:56 GMT 2012
Rank | 15 | Aligned Residues | 16
% Identity | 25% | Template | c3mmyF_
PDB info | PDB header:nuclear protein | Chain: F: PDB Molecule:nuclear pore complex protein nup98; | PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
Resolution | 1.65 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 439 | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | I | G | I | E | T | K | G | V | S | V | E | S | L | S | I | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | M | K | E | Y | E | S | K | S | L | E | E | L | R | L | E
Template Known Secondary structure |  | G | S | T | T | T | T | T | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | .

Download: | Text version | FASTA pairwise alignment | 3D Model in PDB format

View in Jmol

|  | Close Jmol

Send structure to FirstGlance for more viewing options

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions