BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (175 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent... 341 5e-93 UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen... 110 2e-23 UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono... 106 3e-22 UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac... 99 5e-20 UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En... 96 7e-19 UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote... 95 9e-19 UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis... 83 3e-15 UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto... 68 1e-10 UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5... 64 2e-09 UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv... 60 3e-08 UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr... 56 5e-07 UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio... 55 9e-07 UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom... 50 3e-05 UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1... 50 4e-05 UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri... 43 0.005 UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ... 41 0.015 >UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae RepID=PRIC_ECOLI Length = 175 Score = 341 bits (875), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL Sbjct: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER Sbjct: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 >UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae RepID=D2TWE3_9ENTR Length = 204 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 5/176 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LL LE Q+ L ++ P++ A +++RFD+ LF ++ L CL E + L Sbjct: 23 MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPK----IARWQRKRIQHQ 116 ++AV +L QV +L E + AQ+ AI RE++ +LRE ++ + + R++R +QHQ Sbjct: 83 KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYER-LVQHQ 141 Query: 117 DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172 D+ERRL M+ +R +L + V Q L +E+ A RL RCR AL +IE + R Sbjct: 142 DYERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIER 197 >UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter RepID=C9XXU0_CROTZ Length = 171 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M+T LLL+ L+ +LATLR+ P++ S RFDR LF L L EA ++LA L Sbjct: 1 MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AV Q +VAWLAE LAAQ+EA+ REA+ +LR ++A R + ++Q++ER Sbjct: 61 EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL M R R A D L RE++A RLARCR A+ + E L R+TR Sbjct: 121 RLLAMKTGRERRCAENHD----PQLAREIDALNERLARCRTAIARTERALERITR 171 >UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae RepID=D1P4G4_9ENTR Length = 182 Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 5/171 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LLE L+ Q+ L R P+ +RFD LF ++T L C E + L Sbjct: 1 MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSA----PPKIARWQRKRIQHQ 116 H+V + QV +L E + Q++AI+RE S SLRE +S+ ++ ++R QHQ Sbjct: 61 CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLS-QHQ 119 Query: 117 DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167 D+ERRL+ MV+E+ L+ +TD Q +E+ RL RCR AL +IE Sbjct: 120 DYERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIE 170 >UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae RepID=D2BUL0_DICD5 Length = 183 Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 94/178 (52%), Gaps = 6/178 (3%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M T LL L Q+ TL Q P++ +RFDR LF T L LDE N L Sbjct: 1 MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 + V++Q+ +VA++AE L Q+ A+ RE + LRE + P +K ++Q +ER Sbjct: 61 QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120 Query: 121 RLREMVAERRARLARVTDLV------EQQTLHREVEAYEARLARCRHALEKIENRLAR 172 RL M+ +R + LA + L EQQ L RE+ A E RL RCR AL K+E ++ R Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIER 178 >UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus RepID=B4EU75_PROMH Length = 180 Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 3/175 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L + Q+ L + AP++ + FD LF R+ +L + + DN L Sbjct: 1 MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117 VE Q+ QV +LA + Q+EA+ RE S +LR+ + S K +K QHQD Sbjct: 61 ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172 +ERRL+ M+ +R L + V QQ L +E+ A E RLARC+ AL IE + R Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIER 175 >UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV63_SODGM Length = 177 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 85/170 (50%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M + L+ L +L L R +RFD LF R LQ L E+ L+ L Sbjct: 1 MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AVEQ + +VAWLA+ L Q+ A++RE + +LR A + +HQD+ER Sbjct: 61 TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 RL M+ +R + DL + L +E+ A E RL RCR AL ++E ++ Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQI 170 >UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b RepID=C8Q3V5_9ENTR Length = 170 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Query: 33 RFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASA 92 RFD LF + T L L E N+A L A Q + + WLA+ + Q+ A+ RE + Sbjct: 33 RFDAQLFHCKGTRLADYLQELEHNVAQLTAA--DQDVTRRQWLADKVVDQIAALQRECQS 90 Query: 93 WSLREWDSAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAY 152 LR P + Q+KR +++ +E RL M+AER L R L QQ L RE+E Sbjct: 91 QQLRVARERPRTDGK-QQKREEYRGYEIRLLGMIAEREQHLQRAETLSIQQQLIRELEQL 149 Query: 153 EARLARCRHALEKIE 167 RL RCR A+ K+E Sbjct: 150 HLRLGRCRQAIHKLE 164 >UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium RepID=D0YZ22_LISDA Length = 183 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 13/149 (8%) Query: 34 FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQ---LP-QVAWLAEHLAAQLEAIARE 89 FD LF+ R+ L C++E + LR EQQ LP + + E + AQ++A+ RE Sbjct: 33 FDEQLFRCRSKLLTPCVNEIASEVFKLRQ--EQQSGRLLPTRTQHICEKIVAQIQAVQRE 90 Query: 90 ASAWSLREWDSAPPKIARWQ------RKRIQHQDFERRLREMVAERRARLARVTDLVEQQ 143 + S+R+ + + A +Q + QH+D+ER+L+ + ++ L++ +D QQ Sbjct: 91 FATISIRK-NEPKYRSAHYQPLNEIYQNLNQHKDWERQLKTKLRDKEFELSQCSDWQLQQ 149 Query: 144 TLHREVEAYEARLARCRHALEKIENRLAR 172 L EV E R++RC+ AL KIE + + Sbjct: 150 KLQHEVLVLEGRVSRCQQALTKIEQTIMK 178 >UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EJ81_ALISL Length = 186 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 34 FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL-PQVA-WLAEHLAAQLEAIAREAS 91 FD LF R+ L C++E L +++ + L PQ A +L + L AQ+EAI RE + Sbjct: 34 FDERLFGCRSRYLIPCINETKATLQSIQREEKANMLTPQRAEYLTQMLLAQIEAIQREIA 93 Query: 92 AWSLREWDSAPPK-----IARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146 +R + P I+ + QHQ++ RRL +MV E+ + + +QQ L Sbjct: 94 TQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSRRLIQMVQEQEQNVNKCHSFSQQQELQ 153 Query: 147 REVEAYEARLARCRHALEKIENRLA 171 + + E RL RC+ A+ ++E ++ Sbjct: 154 KVLLTTEKRLQRCKTAMIRLEQQIT 178 >UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae RepID=A5F750_VIBC3 Length = 187 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 8/144 (5%) Query: 34 FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQV--AWLAEHLAAQLEAIAREAS 91 FD LF L C++EA L AL E +L + +L+E L AQ+ A+ RE S Sbjct: 38 FDEVLFHCHGKLLTPCVEEAHSTLQALIREKESGRLTALRAEYLSERLLAQIAALTRELS 97 Query: 92 AWSLREWDSAP-----PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146 ++R + P I ++ QHQD+ERRL ++V + +A L E+ Sbjct: 98 TQNVRRNEPKPHAYFKKPINELYQELAQHQDWERRLMDLVRD-KALLLEQASATEKAAAQ 156 Query: 147 REVEAYEARLARCRHALEKIENRL 170 + + E RL RCR A KIE R+ Sbjct: 157 QALLQSEQRLNRCREAKIKIEKRI 180 >UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri RepID=B5FD93_VIBFM Length = 183 Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 7/145 (4%) Query: 34 FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP--QVAWLAEHLAAQLEAIAREAS 91 FD LF R+ L C++EA L +++ + L + +L + L AQ+EAI RE + Sbjct: 33 FDERLFGCRSRYLVPCINEAKATLGSIQREEKANILTAQRAEYLTQMLVAQIEAIQREVA 92 Query: 92 AWSLREWDSAPPK-----IARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146 +R + P I+ + QHQ++ERRL +MV ++ + + +QQ L Sbjct: 93 TQRIRSNEPRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQDLQ 152 Query: 147 REVEAYEARLARCRHALEKIENRLA 171 +++ A E RL RC+ A+ ++E ++ Sbjct: 153 QKLLATEKRLQRCKEAMIRLEQQIT 177 >UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IIU3_PSEHT Length = 202 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 44/203 (21%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAGDNL 57 +KL Q+ATL+Q+ + S FDR +F T++ L + E D + Sbjct: 6 FDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIEDEV 65 Query: 58 AAL-----RHAVEQQQLPQVAWLAEHLAAQLEAI---AREASAWSLREWDS--AP-PKIA 106 ++L RHA + E +A Q++A+ + W ++E S P PK A Sbjct: 66 SSLPPSEHRHAY--------TYALERIATQVQAVFNVIKSTPIW-IKENKSHYKPRPKQA 116 Query: 107 RWQR--------------KRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAY 152 +++ + Q+ +FERRL M+ ER+ ++ + T + Q L+ E+ Sbjct: 117 VYKQAVQQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTT 175 Query: 153 EARLARCRHALEKIENRLARLTR 175 ARL RCR A+ E ++ R+ + Sbjct: 176 HARLGRCRKAISATEEKIQRVEK 198 >UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P3U8_VIBME Length = 210 Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 13/152 (8%) Query: 34 FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQ--LPQVAWLAEHLAAQLEAIAREAS 91 FD LF+ +L++C EA L+ L H L QV L++ L AQLEA+ R Sbjct: 54 FDNQLFKKNVFSLKSCAHEAEQTLSQLHHICHASSPCLVQVKHLSDRLCAQLEALQRVVD 113 Query: 92 AW--SLRE--WDSAPPKIARWQRKR------IQHQDFERRLREMVAERRARLARVTDLVE 141 W SL+ DS P +A+ + IQHQ +E+RL +V R+ +L + + Sbjct: 114 EWENSLQRDGLDSEHPTLAKDMSESQLAEQLIQHQRWEQRLLTLVLNRQYQLEQTSARYY 173 Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARL 173 Q + + + RL RC+ A IE +L L Sbjct: 174 PQA-QQALFLAKQRLNRCQQAKAIIEAQLINL 204 >UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales RepID=B7VM24_VIBSL Length = 196 Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%) Query: 7 LEKLEGQLATLRQRCAPV--SQFATLSARFDRHLFQTRATTL--QACLDEAGDNLAALRH 62 KL+ + TL C+ V S+ A A FDR LF+ ++ L A +A N Sbjct: 18 FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77 Query: 63 AVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120 A Q + +L E L Q+ AI RE + LR + + + QHQD+++ Sbjct: 78 ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYE---ARLARCRHALEKIENRLARL 173 RL ++V R+ D + + + EA++ RL RC +++ IE RL L Sbjct: 138 RLVDLVRVRKLAF----DSAPRHSKKKADEAWQLAKERLERCEDSMKNIE-RLINL 188 >UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XP5_COLP3 Length = 227 Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167 +H +FERRLR+M+ ER + R + + L +EV A RL RCR A+ IE Sbjct: 163 EHHEFERRLRDMITEREQQRIR-SKSANTEKLSQEVLALHQRLGRCRKAISSIE 215 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen... 157 2e-37 UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent... 152 4e-36 UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono... 152 6e-36 UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis... 151 8e-36 UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac... 145 7e-34 UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote... 144 9e-34 UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En... 138 6e-32 UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5... 125 6e-28 UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio... 120 1e-26 UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr... 120 2e-26 UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv... 114 1e-24 UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto... 105 7e-22 UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1... 98 1e-19 UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom... 97 2e-19 Sequences not found previously or not previously below threshold: UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri... 92 8e-18 UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1... 70 3e-11 UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio... 60 3e-08 UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ... 55 1e-06 UniRef50_B1KLR2 Primosomal replication protein N'', putative n=2... 53 4e-06 UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannhei... 52 8e-06 UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=... 50 4e-05 UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q... 47 3e-04 UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinob... 45 0.001 UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomar... 45 0.001 UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histoph... 44 0.002 UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteur... 44 0.002 UniRef50_C6MB14 MscS Mechanosensitive ion channel n=1 Tax=Nitros... 42 0.007 UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritel... 42 0.010 UniRef50_A9V8I0 Predicted protein n=1 Tax=Monosiga brevicollis R... 41 0.014 UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteur... 40 0.025 UniRef50_Q4Q0D8 Flagellum transition zone component, putative n=... 40 0.040 UniRef50_B7MRW2 Putative tail protein from prophage; putative ta... 39 0.055 UniRef50_C3Y243 Putative uncharacterized protein n=1 Tax=Branchi... 39 0.100 >UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae RepID=D2TWE3_9ENTR Length = 204 Score = 157 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 3/175 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LL LE Q+ L ++ P++ A +++RFD+ LF ++ L CL E + L Sbjct: 23 MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP---PKIARWQRKRIQHQD 117 ++AV +L QV +L E + AQ+ AI RE++ +LRE ++ K + +QHQD Sbjct: 83 KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYERLVQHQD 142 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172 +ERRL M+ +R +L + V Q L +E+ A RL RCR AL +IE + R Sbjct: 143 YERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIER 197 >UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae RepID=PRIC_ECOLI Length = 175 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL Sbjct: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER Sbjct: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 >UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter RepID=C9XXU0_CROTZ Length = 171 Score = 152 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M+T LLL+ L+ +LATLR+ P++ S RFDR LF L L EA ++LA L Sbjct: 1 MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AV Q +VAWLAE LAAQ+EA+ REA+ +LR ++A R + ++Q++ER Sbjct: 61 EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL M R R A D L RE++A RLARCR A+ + E L R+TR Sbjct: 121 RLLAMKTGRERRCAENHD----PQLAREIDALNERLARCRTAIARTERALERITR 171 >UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV63_SODGM Length = 177 Score = 151 bits (382), Expect = 8e-36, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 86/175 (49%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M + L+ L +L L R +RFD LF R LQ L E+ L+ L Sbjct: 1 MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AVEQ + +VAWLA+ L Q+ A++RE + +LR A + +HQD+ER Sbjct: 61 TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL M+ +R + DL + L +E+ A E RL RCR AL ++E ++ R Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQIECRER 175 >UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae RepID=D1P4G4_9ENTR Length = 182 Score = 145 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 3/174 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LLE L+ Q+ L R P+ +RFD LF ++T L C E + L Sbjct: 1 MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDS---APPKIARWQRKRIQHQD 117 H+V + QV +L E + Q++AI+RE S SLRE +S A + + QHQD Sbjct: 61 CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLSQHQD 120 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 +ERRL+ MV+E+ L+ +TD Q +E+ RL RCR AL +IE + Sbjct: 121 YERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIEKAIE 174 >UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus RepID=B4EU75_PROMH Length = 180 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 3/177 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L + Q+ L + AP++ + FD LF R+ +L + + DN L Sbjct: 1 MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117 VE Q+ QV +LA + Q+EA+ RE S +LR+ + S K +K QHQD Sbjct: 61 ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 +ERRL+ M+ +R L + V QQ L +E+ A E RLARC+ AL IE + R Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIERQE 177 >UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae RepID=D2BUL0_DICD5 Length = 183 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 6/181 (3%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M T LL L Q+ TL Q P++ +RFDR LF T L LDE N L Sbjct: 1 MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 + V++Q+ +VA++AE L Q+ A+ RE + LRE + P +K ++Q +ER Sbjct: 61 QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120 Query: 121 RLREMVAERRARLARVTDLV------EQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 RL M+ +R + LA + L EQQ L RE+ A E RL RCR AL K+E ++ R Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIERQE 180 Query: 175 R 175 + Sbjct: 181 Q 181 >UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium RepID=D0YZ22_LISDA Length = 183 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Query: 7 LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 L + + +A L+ + A + + FD LF+ R+ L C++E + LR Sbjct: 4 LTRFDTLIAQLKTQAANLDRTRGEANKPLFDEQLFRCRSKLLTPCVNEIASEVFKLRQEQ 63 Query: 65 EQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117 + +L + + E + AQ++A+ RE + S+R+ + + + QH+D Sbjct: 64 QSGRLLPTRTQHICEKIVAQIQAVQREFATISIRKNEPKYRSAHYQPLNEIYQNLNQHKD 123 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 +ER+L+ + ++ L++ +D QQ L EV E R++RC+ AL KIE + + R Sbjct: 124 WERQLKTKLRDKEFELSQCSDWQLQQKLQHEVLVLEGRVSRCQQALTKIEQTIMKRER 181 >UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri RepID=B5FD93_VIBFM Length = 183 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 +E L L + A + + FD LF R+ L C++EA L +++ Sbjct: 4 FTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREE 63 Query: 65 EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117 + L + +L + L AQ+EAI RE + +R + P I+ + QHQ+ Sbjct: 64 KANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQE 123 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 +ERRL +MV ++ + + +QQ L +++ A E RL RC+ A+ ++E ++ Sbjct: 124 WERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQIT 177 >UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae RepID=A5F750_VIBC3 Length = 187 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 10/177 (5%) Query: 8 EKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVE 65 K L L+ A + + FD LF L C++EA L AL E Sbjct: 10 SKFHTILNELKHSAAQLDRQRGEHHRPLFDEVLFHCHGKLLTPCVEEAHSTLQALIREKE 69 Query: 66 QQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAP-----PKIARWQRKRIQHQDF 118 +L + +L+E L AQ+ A+ RE S ++R + P I ++ QHQD+ Sbjct: 70 SGRLTALRAEYLSERLLAQIAALTRELSTQNVRRNEPKPHAYFKKPINELYQELAQHQDW 129 Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 ERRL ++V ++ L + + E+ + + E RL RCR A KIE R+ R Sbjct: 130 ERRLMDLVRDKALLLEQASA-TEKAAAQQALLQSEQRLNRCREAKIKIEKRITTQER 185 >UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EJ81_ALISL Length = 186 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%) Query: 32 ARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP--QVAWLAEHLAAQLEAIARE 89 FD LF R+ L C++E L +++ + L + +L + L AQ+EAI RE Sbjct: 32 PLFDERLFGCRSRYLIPCINETKATLQSIQREEKANMLTPQRAEYLTQMLLAQIEAIQRE 91 Query: 90 ASAWSLREWDSAPP-----KIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQT 144 + +R + P I+ + QHQ++ RRL +MV E+ + + +QQ Sbjct: 92 IATQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSRRLIQMVQEQEQNVNKCHSFSQQQE 151 Query: 145 LHREVEAYEARLARCRHALEKIENRLA 171 L + + E RL RC+ A+ ++E ++ Sbjct: 152 LQKVLLTTEKRLQRCKTAMIRLEQQIT 178 >UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b RepID=C8Q3V5_9ENTR Length = 170 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 3/171 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M ++L+ L LRQ+ A + RFD LF + T L L E N+A L Sbjct: 1 MPLPRPQQRLQLTLQLLRQQIAQQPDGSCRQPRFDAQLFHCKGTRLADYLQELEHNVAQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 A Q + + WLA+ + Q+ A+ RE + LR P + Q+KR +++ +E Sbjct: 61 TAA--DQDVTRRQWLADKVVDQIAALQRECQSQQLRVARERPRTDGK-QQKREEYRGYEI 117 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 RL M+AER L R L QQ L RE+E RL RCR A+ K+E + Sbjct: 118 RLLGMIAEREQHLQRAETLSIQQQLIRELEQLHLRLGRCRQAIHKLELQFT 168 >UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P3U8_VIBME Length = 210 Score = 97.9 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 15/182 (8%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSAR--FDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 +L L + + R FD LF+ +L++C EA L+ L H Sbjct: 25 FGSATKRLQRLMRHAELIDTQYRHHTRRWFDNQLFKKNVFSLKSCAHEAEQTLSQLHHIC 84 Query: 65 EQQQ--LPQVAWLAEHLAAQLEAIAREASAW--SLREW--DSAPPKIARWQRK------R 112 L QV L++ L AQLEA+ R W SL+ DS P +A+ + Sbjct: 85 HASSPCLVQVKHLSDRLCAQLEALQRVVDEWENSLQRDGLDSEHPTLAKDMSESQLAEQL 144 Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172 IQHQ +E+RL +V R+ +L + + Q + + + RL RC+ A IE +L Sbjct: 145 IQHQRWEQRLLTLVLNRQYQLEQTSARYYPQA-QQALFLAKQRLNRCQQAKAIIEAQLIN 203 Query: 173 LT 174 L Sbjct: 204 LQ 205 >UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IIU3_PSEHT Length = 202 Score = 97.1 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 32/197 (16%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAGDNL 57 +KL Q+ATL+Q+ + S FDR +F T++ L + E D + Sbjct: 6 FDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIEDEV 65 Query: 58 AALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSL-----REWDSAPPKIARWQR-- 110 ++L + + + E +A Q++A+ + + + PK A +++ Sbjct: 66 SSLPPSEHRH---AYTYALERIATQVQAVFNVIKSTPIWIKENKSHYKPRPKQAVYKQAV 122 Query: 111 ------------KRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLAR 158 + Q+ +FERRL M+ ER+ ++ + T + Q L+ E+ ARL R Sbjct: 123 QQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTTHARLGR 181 Query: 159 CRHALEKIENRLARLTR 175 CR A+ E ++ R+ + Sbjct: 182 CRKAISATEEKIQRVEK 198 >UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales RepID=B7VM24_VIBSL Length = 196 Score = 91.7 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 7/170 (4%) Query: 7 LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 KL+ + TL C+ V + A FDR LF+ ++ L E + Sbjct: 18 FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77 Query: 65 EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120 QL + +L E L Q+ AI RE + LR + + + QHQD+++ Sbjct: 78 ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 RL ++V R+ ++ + + RL RC +++ IE + Sbjct: 138 RLVDLVRVRKLAFDSA-PRHSKKKADEAWQLAKERLERCEDSMKNIERLI 186 >UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NYK0_9VIBR Length = 182 Score = 70.1 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 9/182 (4%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L L QL A FD+ LF+ ++ L EA + L + Sbjct: 1 MKQFGQLSSLLEQLEQEATLLDNQRGEQ-QQALFDQKLFRCQSKLLTPYTYEAHETLDKI 59 Query: 61 RHAVEQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDS-----APPKIARWQRKRI 113 L Q +L+E L Q+ AI RE + +LR+ + + + + Sbjct: 60 LCEQSSGSLSPDQAEFLSEKLLWQISAIKRELATTALRQSEPTGKSFSQRNLNELYQSLA 119 Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173 QHQ +E+RL+ +V + T + +++ + RL RC+ A KIE +++ Sbjct: 120 QHQQWEQRLKTLVKNKEQEHKLATPRDKSLAAQ-TLQSAQRRLQRCQQAKIKIEKQISYK 178 Query: 174 TR 175 R Sbjct: 179 ER 180 >UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio shilonii AK1 RepID=A6D7K7_9VIBR Length = 171 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%) Query: 7 LEKLEGQLATLRQRCAPVS--QFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 L +++ +L L Q FD HLF LQ C+ EA NL + Sbjct: 3 LSEVKARLKQLHQDAQEFDFRNRGHKKPLFDEHLFSASNLLLQPCVIEAERNLDKIITLS 62 Query: 65 EQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDS-APPKIARWQRKRIQHQDFERRL 122 +Q + + QLEAI R + + + + + QHQ +E++L Sbjct: 63 KQGISGSSSEIWVTKFTEQLEAIERVLLIANTHTDTALECKSLEQLRADLKQHQVWEQKL 122 Query: 123 REMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 +V ++ L ++ QT ++ + E RL RCR+A+ I++ + + R Sbjct: 123 CTLVRQQEQCL------IDDQTTKPQLISTEQRLQRCRNAMNAIQHTINQKMR 169 >UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XP5_COLP3 Length = 227 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 104 KIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHAL 163 + ++ +H +FERRLR+M+ ER + R + L +EV A RL RCR A+ Sbjct: 153 TSHQLYQQLSEHHEFERRLRDMITEREQQRIRSKS-ANTEKLSQEVLALHQRLGRCRKAI 211 Query: 164 EKIENRLARLTR 175 IE + + + Sbjct: 212 SSIERSIEQAEK 223 >UniRef50_B1KLR2 Primosomal replication protein N'', putative n=21 Tax=Shewanella RepID=B1KLR2_SHEWM Length = 224 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 40/214 (18%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATL--------SARFDRHLFQTRATTLQACLDE 52 M T+ LL++L Q L Q + RF+ LF L+ C+D+ Sbjct: 1 MTTSELLKRLRAQHKQLEQEVLQHDAKLPKGQRRLLQDTERFNDSLFIQTGAELKPCIDQ 60 Query: 53 AGDNLAALRHAVEQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDSAPPKIAR---- 107 ++ L ++ + L E + + A+ R + SL + K R Sbjct: 61 ISKSIEQLEKLIKGKISANTILLSCERIQDRFTAVKRALATTSLDVKSAEHQKQMRIAKA 120 Query: 108 --------------------------WQRKRIQHQDFERRLREMVAERRARLARVTDLVE 141 + +H ++ + + + ++ L + Sbjct: 121 QQRRRKSHSNSGFDWIAAGVMQNSHQLYEELNKHLNWVKAFEQKIQNLQSELEYCHSADK 180 Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 + E+ RL +CR A+ IE R+ R Sbjct: 181 IKK-QNEILLVHRRLGKCRQAISYIEERIQAFER 213 >UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UQ3_MANSM Length = 186 Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 77/179 (43%), Gaps = 14/179 (7%) Query: 4 ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63 L+E+L+ ++ L + A S + FDR LF + Q D+ LA + Sbjct: 5 TALIEQLQAKVQQLTLQFAAFSDKKIYAK-FDRTLFSEDFESGQFYFDQIQHTLAQI-AG 62 Query: 64 VEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQR------------K 111 +++ ++PQ+ + +E L AQ A++ + + R+ P ++ ++ + Sbjct: 63 LKETEIPQIQFFSEKLLAQCTALSDAINQNNGRKTAPTPKIPSQREKIKHELNQLPPRER 122 Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 +++ + + L E + E + + ++ +++ R RC A+E +E L Sbjct: 123 LVRYYEALQALNEKINELEDKRDTAHNEQQKAGYQHQIDITLPRRKRCLEAIEVLEEYL 181 >UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=Psychromonas RepID=A1SWQ6_PSYIN Length = 188 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFATLSAR----FDRHLFQTRATTLQACLDEAGDNLA 58 L +++L QL L +RC + + + + F+ H+F R TL + + Sbjct: 7 KNLPIDQLNRQLKVLSKRCEVLDESVSQTENKCFVFEVHIFPKRCLTLLGYIKQIEHTAK 66 Query: 59 ALRHAVEQQQLPQ-VAWLAEHLAAQLEAIAR-----EASAWSLREWDSAPPKIARWQRKR 112 +L++A+++ +A+ Q + + + E + + K +Q+ + Sbjct: 67 SLQNALDKNLPEALIAFECTLFIDQFQVLLQLVQSLEKGEADILYKSYSSIKENIYQQLQ 126 Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 Q+ +E RL M+AE+ + ++ ++ + ++E + R +C + +E + Sbjct: 127 KQYH-YEERLLNMIAEQEELMTH-SNAQQKIDIKEKIEVLKGRYQKCNSYTQMLEFKFQ 183 >UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q6CCK7_YARLI Length = 736 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 3/163 (1%) Query: 14 LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73 + TL + + + L + + L + E + + + ++Q + Sbjct: 484 VTTLLESLTTAQMTLSEEKSKTKKLRKDYSKRLASIRQEIENTKSKMESNLKQDSKSR-- 541 Query: 74 WLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA-ERRAR 132 E L L A+ E + + + + ++FE R +++ E+ A+ Sbjct: 542 HKIEQLQLSLPALEEELAMKQGEFEELNETVAGVSAAHKAKKKEFEERQQQLTKLEKEAQ 601 Query: 133 LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 + ++ + +EV + +L R + K N ++R+ R Sbjct: 602 KLKKEADEKEASFQQEVVQLKTKLDRLQGRRAKAANDVSRVER 644 >UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VQB5_ACTSZ Length = 193 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 17/183 (9%) Query: 4 ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63 LL +L+ + L+++ PV + L +FD +F L+ L+E + + Sbjct: 5 TALLNRLQRLITQLQKQYEPV-KRQILHTKFDPAIFSENFQPLEFYLNEIRHCIEQISQ- 62 Query: 64 VEQQQLPQVAWLAEHLAAQLEAIAREA---------------SAWSLREWDSAPPKIARW 108 + +++ Q A+ +E L+AQ A+ SLRE + Sbjct: 63 LSPEEVAQTAFFSEKLSAQYTALTDALQFIEKPKAKSAVNFKPVLSLREKRRQQLEQLPP 122 Query: 109 QRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIEN 168 + + I++ + + L E + ++ + E+ + ++++ R RC A+E +E Sbjct: 123 RARLIKYYEALQALNEKLNGQKDLQKQCLSEKEKMRIQQQIDITRQRRQRCLDAIEVLEE 182 Query: 169 RLA 171 LA Sbjct: 183 YLA 185 >UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomarina baltica OS145 RepID=A3WNT0_9GAMM Length = 170 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFA----TLSARFDRHLFQTRATTLQACLDEAGDNLA 58 T L++ LA LR++ Q F +LF TR+ A ++E + Sbjct: 2 TPTYLQQFSRALAVLREKAQVFDQQKANKRFAEQWFAENLFTTRSQFAVAYVNETEQLIN 61 Query: 59 ALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDF 118 L + + +LAE ++ Q+ +++ +L + P + + Sbjct: 62 KL---ITSDDNERKQYLAEKISEQVLSLS------ALLQNSRPPDADFDLRAQLQAQHGQ 112 Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 + + RL +L +Q + +AY+ RL RC+ A+ ++E ++ Sbjct: 113 LHQTLAKYRQYEIRLRNKAELFQQSGDLVQAQAYQKRLNRCQQAISQVERQIQ 165 >UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histophilus somni RepID=Q0I4D2_HAES1 Length = 197 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 20/193 (10%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M+ + ++ L+ ++ R + + + A+FDR LF +L L E L L Sbjct: 1 MQQSPVIILLKQKVDEFFSRYSHIPSKQKIYAKFDRTLFSQDFESLSFYLKEIRQCLTQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASA----------------WSLREWDSAPPK 104 + + + + +E L Q A++ S S++E Sbjct: 61 EKINDDN-VQKYTFYSEKLKGQCNALSEALSQTNAKTNIKFQHNDTSLQSVQERREKQRI 119 Query: 105 IARW---QRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161 + + ++ + + L + +R T L ++QT +++ + R RC Sbjct: 120 ALNKLPPRERLSKYYEALQTLNTKLERQRDCFEEATLLQDKQTYSQQIAITQQRKQRCSE 179 Query: 162 ALEKIENRLARLT 174 A+E++E LA L Sbjct: 180 AIEQLEEYLALLD 192 >UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PN53_9PAST Length = 184 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M L+ +L ++ L Q+ + + + HLF T +E L L Sbjct: 1 MTKTELIAQLSQKVDQLYQQVGAKKDQRL-TYKLEAHLFSEHYQTYTFYFNEIKQTLTQL 59 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------QRKRIQ 114 +++Q L +L E +Q AI+ ++ + P+ + + + + Sbjct: 60 DK-IDEQDLELCRFLVEKFLSQCTAISDSLLLKKNQQTTTFTPQNKQDIHRLPPRERLAK 118 Query: 115 HQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 + + L + + + + R + TD +Q L + + + R +C +A+E +E L Sbjct: 119 YYEALNALNQKITDYQDRQLKCTDPNQQYQLAQRIAFNQLRRDKCLNAIETLEEYL 174 >UniRef50_C6MB14 MscS Mechanosensitive ion channel n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MB14_9PROT Length = 1135 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 59/172 (34%), Gaps = 29/172 (16%) Query: 13 QLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQV 72 ++ATLR+R +S LF+ R L EQ++L Sbjct: 166 EIATLRRRIEELSVSIVAQKDEPAALFEAR----------------RLHRLSEQRRLQMT 209 Query: 73 AWLAEHLAAQLEAIAR----EASAWSLR-EWDSAPPKIARWQRKRIQHQDFE-RRLREMV 126 L LA Q A R E S LR D +I Q++ +E L + Sbjct: 210 --LELRLAEQDTATQRQRLHELSLRELRYRLDLHEERIKHLQQRITSRGRYELESLIGQL 267 Query: 127 AERRARLAR-----VTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173 +R LA + E+ +LAR R AL +IE R+ Sbjct: 268 IKREKELAGGNTVAAEAATVNRKTGEELLQQNEQLARDRAALARIEQARERI 319 >UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FAM0_9GAMM Length = 202 Score = 41.6 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 40/193 (20%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66 L L Q+ A ++ A F LF + + + E ++ L+H ++ Sbjct: 21 LSALSKQVN--SNHTATINYKLRDRALFYPGLFINKNHDIHQYVAELEKSMIRLQHCFDK 78 Query: 67 Q-----------QLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIAR-------- 107 L L E +A Q AI R + Sbjct: 79 SFDKPSISSSNDTLSIEQVLLEKVAHQFRAINGVLQQCHFRRGEVKEEPKNYDVIAKKLL 138 Query: 108 -----WQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHA 162 +K Q D+ERRL+ ++ QQ +++ + RL RC+ A Sbjct: 139 QKSHYLYQKLAQQIDYERRLQAIID--------------QQREPLQLQQTKQRLQRCQVA 184 Query: 163 LEKIENRLARLTR 175 K+ +L R + Sbjct: 185 TAKVRQQLQRYEQ 197 >UniRef50_A9V8I0 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V8I0_MONBE Length = 1781 Score = 41.2 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 23/173 (13%) Query: 12 GQLATLRQRCAPVSQ--FATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL 69 ++A LR+R A A DR + TLQ L+ D +A L QQQ Sbjct: 913 REVAELRERLASARAELQQHQGALVDR---DHKVKTLQEELERFKDQVANLESDRAQQQS 969 Query: 70 PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRI----QHQDFERRLR-- 123 +L+A + LR S I Q + ++ + RL Sbjct: 970 Q---------LDKLQAATSDQHRDKLRRNSSMTTNINALQDQLASLNEENCELRARLESA 1020 Query: 124 -EMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 + ER+ + + +T RE E L +C++ L + E R+ L + Sbjct: 1021 EALADERQRLVREAQRSRQDETAKREGLGLE--LDKCQNQLTRAERRIESLEQ 1071 >UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CM53_PASMU Length = 184 Score = 40.5 bits (93), Expect = 0.025, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L+ L ++ L + + L RF HLF E L L Sbjct: 1 MKKTELIRILTNKITQLDHKQRT-ATEQPLKTRFAPHLFSENNQVFSFYFQELKQTLTQL 59 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQ-------RKRI 113 +A E + A+ AE L +Q A++ + ++ P A + Sbjct: 60 ENAPET-DIALCAFFAEKLLSQYVALSEALTHTQIKTETFTPTNKATHHVHQLPPRERLE 118 Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 ++ + + L E + + + E++ L ++++ + R A+C A+E +E L Sbjct: 119 KYYEALQALNEKLMSLQDSQQKTQAEQEKKLLGQKIQLTQQRKAKCLVAIETLEEYL 175 >UniRef50_Q4Q0D8 Flagellum transition zone component, putative n=2 Tax=Leishmania RepID=Q4Q0D8_LEIMA Length = 1468 Score = 39.7 bits (91), Expect = 0.040, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62 L + ++A Q S ATL A D L L ++ ++ AALR Sbjct: 502 AQARLLDCDREVAAFHQVFDTQSSPATLRAIIDER------DHLVELLQQSHESEAALRD 555 Query: 63 AVEQQQLPQVAWLAEHL---AAQLEAIAREASAWSLREWDSAPPKIARWQRKR-IQHQDF 118 V+ Q V + + A+ A+AR+ A ++A + +Q + + Sbjct: 556 EVKAAQQQTVQAMEKRYQVQCAEQHAMARDREAQQEETIQKLRKRVAALEHVLEVQRETY 615 Query: 119 ERRLREMVAERRARLAR 135 ER+L E ER A+L Sbjct: 616 ERQLAEYAEEREAQLTE 632 >UniRef50_B7MRW2 Putative tail protein from prophage; putative tail length tape measure motif n=1 Tax=Escherichia coli ED1a RepID=B7MRW2_ECO81 Length = 942 Score = 39.3 bits (90), Expect = 0.055, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 15/142 (10%) Query: 46 LQACLDEAGDNLAALRHAVEQQQLPQVAW--LAEHLAA---QLEAIA---REASAWSLRE 97 L L E D++ +L E Q + +AA QL + RE + S R+ Sbjct: 43 LSDSLRETQDSIRSLERQSEAFAAAQTKFDEATRKIAAVQQQLNRLQQAEREGTVLSERQ 102 Query: 98 WD---SAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQ-QTLHREVEAYE 153 + S ++ R R R HQ RRL + E + Q R Y Sbjct: 103 REMMASLTTRLERLNRVRDVHQ---RRLEDSRRELERHGIAAEGSSQTIQAAIRRTAEYN 159 Query: 154 ARLARCRHALEKIENRLARLTR 175 LAR R AL ++ R + Sbjct: 160 EALARQRQALAQVTRAQQRYEQ 181 >UniRef50_C3Y243 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y243_BRAFL Length = 1631 Score = 38.5 bits (88), Expect = 0.100, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%) Query: 40 QTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD 99 Q + L+ + E + L ++ QL+A+ R+A + + Sbjct: 735 QCKLQQLEERIKEVREWKEQLLDQRRLAMDEKLERAERKRLLQLQAVVRKAQEEEAKANE 794 Query: 100 ----SAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEAR 155 + + ++Q E RL+E++ R+ + E R+ E R Sbjct: 795 IAFINTLEAQNKRHDIMTRYQLVESRLQELLDMRQKKQEEKAAKEEAVQERRKALEAE-R 853 Query: 156 LARCRHALEKIENRLARLTR 175 AR + + K E + AR+ + Sbjct: 854 QARVQELINKREEQEARIEQ 873 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis... 139 3e-32 UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono... 139 3e-32 UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent... 127 1e-28 UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q... 127 2e-28 UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen... 125 6e-28 UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri... 121 8e-27 UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio... 116 3e-25 UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr... 116 3e-25 UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5... 115 5e-25 UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote... 114 9e-25 UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac... 114 1e-24 UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En... 113 3e-24 UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannhei... 102 6e-21 UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv... 101 1e-20 UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio... 96 5e-19 UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto... 94 3e-18 UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteur... 91 1e-17 UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=... 89 7e-17 UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom... 89 7e-17 UniRef50_B1KLR2 Primosomal replication protein N'', putative n=2... 88 1e-16 UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1... 87 2e-16 UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histoph... 86 3e-16 UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1... 83 4e-15 UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinob... 81 1e-14 UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomar... 77 2e-13 UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ... 57 3e-07 Sequences not found previously or not previously below threshold: UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteur... 70 4e-11 UniRef50_C9R5Z0 Primosomal replication protein N n=2 Tax=Aggrega... 59 7e-08 UniRef50_B0BNS4 Putative uncharacterized protein n=4 Tax=Actinob... 52 8e-06 UniRef50_P43987 Uncharacterized protein HI0326 n=17 Tax=Haemophi... 46 5e-04 UniRef50_A8IEQ2 Centriole proteome protein (Fragment) n=2 Tax=ce... 45 0.001 UniRef50_A7JWL4 Putative uncharacterized protein n=3 Tax=Mannhei... 45 0.001 UniRef50_B9CW03 Putative uncharacterized protein n=2 Tax=Actinob... 44 0.003 UniRef50_Q5QWS5 Primosomal replication protein C n=1 Tax=Idiomar... 42 0.007 UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritel... 41 0.017 UniRef50_A9USD4 Predicted protein n=1 Tax=Monosiga brevicollis R... 41 0.018 UniRef50_B8J072 Putative uncharacterized protein n=1 Tax=Desulfo... 41 0.020 UniRef50_B5JPV5 Methyltransferase domain family n=1 Tax=Verrucom... 40 0.021 UniRef50_Q2PDZ3 CG6664, isoform D n=17 Tax=Diptera RepID=Q2PDZ3_... 40 0.030 >UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV63_SODGM Length = 177 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 86/175 (49%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M + L+ L +L L R +RFD LF R LQ L E+ L+ L Sbjct: 1 MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AVEQ + +VAWLA+ L Q+ A++RE + +LR A + +HQD+ER Sbjct: 61 TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL M+ +R + DL + L +E+ A E RL RCR AL ++E ++ R Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQIECRER 175 >UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter RepID=C9XXU0_CROTZ Length = 171 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M+T LLL+ L+ +LATLR+ P++ S RFDR LF L L EA ++LA L Sbjct: 1 MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 AV Q +VAWLAE LAAQ+EA+ REA+ +LR ++A R + ++Q++ER Sbjct: 61 EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL M R R A D L RE++A RLARCR A+ + E L R+TR Sbjct: 121 RLLAMKTGRERRCAENHDP----QLAREIDALNERLARCRTAIARTERALERITR 171 >UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae RepID=PRIC_ECOLI Length = 175 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL Sbjct: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER Sbjct: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 >UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q6CCK7_YARLI Length = 736 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 3/163 (1%) Query: 14 LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73 + TL + + + L + + L + E + + + ++Q + Sbjct: 484 VTTLLESLTTAQMTLSEEKSKTKKLRKDYSKRLASIRQEIENTKSKMESNLKQDSKSR-- 541 Query: 74 WLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA-ERRAR 132 E L L A+ E + + + + ++FE R +++ E+ A+ Sbjct: 542 HKIEQLQLSLPALEEELAMKQGEFEELNETVAGVSAAHKAKKKEFEERQQQLTKLEKEAQ 601 Query: 133 LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 + ++ + +EV + +L R + K N ++R+ R Sbjct: 602 KLKKEADEKEASFQQEVVQLKTKLDRLQGRRAKAANDVSRVER 644 >UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae RepID=D2TWE3_9ENTR Length = 204 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 3/177 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LL LE Q+ L ++ P++ A +++RFD+ LF ++ L CL E + L Sbjct: 23 MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP---PKIARWQRKRIQHQD 117 ++AV +L QV +L E + AQ+ AI RE++ +LRE ++ K + +QHQD Sbjct: 83 KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYERLVQHQD 142 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 +ERRL M+ +R +L + V Q L +E+ A RL RCR AL +IE + R Sbjct: 143 YERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIERDE 199 >UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales RepID=B7VM24_VIBSL Length = 196 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 7/171 (4%) Query: 7 LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 KL+ + TL C+ V + A FDR LF+ ++ L E + Sbjct: 18 FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77 Query: 65 EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120 QL + +L E L Q+ AI RE + LR + + + QHQD+++ Sbjct: 78 ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 RL ++V R+ ++ + + RL RC +++ IE + Sbjct: 138 RLVDLVRVRKLAFDSA-PRHSKKKADEAWQLAKERLERCEDSMKNIERLIN 187 >UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri RepID=B5FD93_VIBFM Length = 183 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 +E L L + A + + FD LF R+ L C++EA L +++ Sbjct: 4 FTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREE 63 Query: 65 EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117 + L + +L + L AQ+EAI RE + +R + P I+ + QHQ+ Sbjct: 64 KANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQE 123 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 +ERRL +MV ++ + + +QQ L +++ A E RL RC+ A+ ++E ++ + Sbjct: 124 WERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQITYREQ 181 >UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae RepID=A5F750_VIBC3 Length = 187 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 10/177 (5%) Query: 8 EKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVE 65 K L L+ A + + FD LF L C++EA L AL E Sbjct: 10 SKFHTILNELKHSAAQLDRQRGEHHRPLFDEVLFHCHGKLLTPCVEEAHSTLQALIREKE 69 Query: 66 QQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAP-----PKIARWQRKRIQHQDF 118 +L + +L+E L AQ+ A+ RE S ++R + P I ++ QHQD+ Sbjct: 70 SGRLTALRAEYLSERLLAQIAALTRELSTQNVRRNEPKPHAYFKKPINELYQELAQHQDW 129 Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 ERRL ++V ++ L + + E+ + + E RL RCR A KIE R+ R Sbjct: 130 ERRLMDLVRDKALLLEQASA-TEKAAAQQALLQSEQRLNRCREAKIKIEKRITTQER 185 >UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium RepID=D0YZ22_LISDA Length = 183 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%) Query: 7 LEKLEGQLATLRQRCAPVSQFATL--SARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 L + + +A L+ + A + + FD LF+ R+ L C++E + LR Sbjct: 4 LTRFDTLIAQLKTQAANLDRTRGEANKPLFDEQLFRCRSKLLTPCVNEIASEVFKLRQEQ 63 Query: 65 EQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117 + +L + + E + AQ++A+ RE + S+R+ + + + QH+D Sbjct: 64 QSGRLLPTRTQHICEKIVAQIQAVQREFATISIRKNEPKYRSAHYQPLNEIYQNLNQHKD 123 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 +ER+L+ + ++ L++ +D QQ L EV E R++RC+ AL KIE + + R Sbjct: 124 WERQLKTKLRDKEFELSQCSDWQLQQKLQHEVLVLEGRVSRCQQALTKIEQTIMKRER 181 >UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus RepID=B4EU75_PROMH Length = 180 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 3/177 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L + Q+ L + AP++ + FD LF R+ +L + + DN L Sbjct: 1 MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117 VE Q+ QV +LA + Q+EA+ RE S +LR+ + S K +K QHQD Sbjct: 61 ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 +ERRL+ M+ +R L + V QQ L +E+ A E RLARC+ AL IE + R Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIERQE 177 >UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae RepID=D1P4G4_9ENTR Length = 182 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 3/177 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MKT LLE L+ Q+ L R P+ +RFD LF ++T L C E + L Sbjct: 1 MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSA---PPKIARWQRKRIQHQD 117 H+V + QV +L E + Q++AI+RE S SLRE +S+ + + QHQD Sbjct: 61 CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLSQHQD 120 Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 +ERRL+ MV+E+ L+ +TD Q +E+ RL RCR AL +IE + Sbjct: 121 YERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIEKAIEHQE 177 >UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae RepID=D2BUL0_DICD5 Length = 183 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 6/181 (3%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M T LL L Q+ TL Q P++ +RFDR LF T L LDE N L Sbjct: 1 MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 + V++Q+ +VA++AE L Q+ A+ RE + LRE + P +K ++Q +ER Sbjct: 61 QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120 Query: 121 RLREMVAERRAR------LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 RL M+ +R + L+ L EQQ L RE+ A E RL RCR AL K+E ++ R Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIERQE 180 Query: 175 R 175 + Sbjct: 181 Q 181 >UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UQ3_MANSM Length = 186 Score = 102 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 14/183 (7%) Query: 4 ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63 L+E+L+ ++ L + A S A+FDR LF + Q D+ LA + Sbjct: 5 TALIEQLQAKVQQLTLQFAAFSDKKIY-AKFDRTLFSEDFESGQFYFDQIQHTLAQI-AG 62 Query: 64 VEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------------QRK 111 +++ ++PQ+ + +E L AQ A++ + + R+ P ++ + + Sbjct: 63 LKETEIPQIQFFSEKLLAQCTALSDAINQNNGRKTAPTPKIPSQREKIKHELNQLPPRER 122 Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 +++ + + L E + E + + ++ +++ R RC A+E +E L+ Sbjct: 123 LVRYYEALQALNEKINELEDKRDTAHNEQQKAGYQHQIDITLPRRKRCLEAIEVLEEYLS 182 Query: 172 RLT 174 Sbjct: 183 FKE 185 >UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EJ81_ALISL Length = 186 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 9/175 (5%) Query: 10 LEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67 +E L L + A + + FD LF R+ L C++E L +++ + Sbjct: 8 IEIMLEQLAKTSAEIDRRRGEQRLPLFDERLFGCRSRYLIPCINETKATLQSIQREEKAN 67 Query: 68 QLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQDFER 120 L + +L + L AQ+EAI RE + +R + P I+ + QHQ++ R Sbjct: 68 MLTPQRAEYLTQMLLAQIEAIQREIATQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSR 127 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 RL +MV E+ + + +QQ L + + E RL RC+ A+ ++E ++ + Sbjct: 128 RLIQMVQEQEQNVNKCHSFSQQQELQKVLLTTEKRLQRCKTAMIRLEQQITYREQ 182 >UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio shilonii AK1 RepID=A6D7K7_9VIBR Length = 171 Score = 95.9 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%) Query: 7 LEKLEGQLATLRQRCAPVS--QFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 L +++ +L L Q FD HLF LQ C+ EA NL + Sbjct: 3 LSEVKARLKQLHQDAQEFDFRNRGHKKPLFDEHLFSASNLLLQPCVIEAERNLDKIITLS 62 Query: 65 EQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDS-APPKIARWQRKRIQHQDFERRL 122 +Q + + QLEAI R + + + + + QHQ +E++L Sbjct: 63 KQGISGSSSEIWVTKFTEQLEAIERVLLIANTHTDTALECKSLEQLRADLKQHQVWEQKL 122 Query: 123 REMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 +V ++ L ++ QT ++ + E RL RCR+A+ I++ + + R Sbjct: 123 CTLVRQQEQCL------IDDQTTKPQLISTEQRLQRCRNAMNAIQHTINQKMR 169 >UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b RepID=C8Q3V5_9ENTR Length = 170 Score = 93.6 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 3/173 (1%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M ++L+ L LRQ+ A + RFD LF + T L L E N+A L Sbjct: 1 MPLPRPQQRLQLTLQLLRQQIAQQPDGSCRQPRFDAQLFHCKGTRLADYLQELEHNVAQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 A Q + + WLA+ + Q+ A+ RE + LR P + Q+KR +++ +E Sbjct: 61 TAA--DQDVTRRQWLADKVVDQIAALQRECQSQQLRVARERPRTDGK-QQKREEYRGYEI 117 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173 RL M+AER L R L QQ L RE+E RL RCR A+ K+E + Sbjct: 118 RLLGMIAEREQHLQRAETLSIQQQLIRELEQLHLRLGRCRQAIHKLELQFTAR 170 >UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PN53_9PAST Length = 184 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M L+ +L ++ L Q+ + + + HLF T +E L L Sbjct: 1 MTKTELIAQLSQKVDQLYQQVGAKKDQRL-TYKLEAHLFSEHYQTYTFYFNEIKQTLTQL 59 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------QRKRIQ 114 +++Q L +L E +Q AI+ ++ + P+ + + + + Sbjct: 60 DK-IDEQDLELCRFLVEKFLSQCTAISDSLLLKKNQQTTTFTPQNKQDIHRLPPRERLAK 118 Query: 115 HQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 + + L + + + + R + TD +Q L + + + R +C +A+E +E L Sbjct: 119 YYEALNALNQKITDYQDRQLKCTDPNQQYQLAQRIAFNQLRRDKCLNAIETLEEYL 174 >UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=Psychromonas RepID=A1SWQ6_PSYIN Length = 188 Score = 89.0 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 76/179 (42%), Gaps = 12/179 (6%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFATLSAR----FDRHLFQTRATTLQACLDEAGDNLA 58 L +++L QL L +RC + + + + F+ H+F R TL + + Sbjct: 7 KNLPIDQLNRQLKVLSKRCEVLDESVSQTENKCFVFEVHIFPKRCLTLLGYIKQIEHTAK 66 Query: 59 ALRHAVEQQQLPQ-VAWLAEHLAAQLEAIAR-----EASAWSLREWDSAPPKIARWQRKR 112 +L++A+++ +A+ Q + + + E + + K +Q+ + Sbjct: 67 SLQNALDKNLPEALIAFECTLFIDQFQVLLQLVQSLEKGEADILYKSYSSIKENIYQQLQ 126 Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 Q+ +E RL M+AE+ + ++ ++ + ++E + R +C + +E + Sbjct: 127 KQYH-YEERLLNMIAEQEELMTH-SNAQQKIDIKEKIEVLKGRYQKCNSYTQMLEFKFQ 183 >UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales RepID=Q3IIU3_PSEHT Length = 202 Score = 89.0 bits (219), Expect = 7e-17, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 32/200 (16%) Query: 4 ALLLEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAG 54 + +KL Q+ATL+Q+ + S FDR +F T++ L + E Sbjct: 3 SPAFDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIE 62 Query: 55 DNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP------------ 102 D +++L + + + E +A Q++A+ + + ++ Sbjct: 63 DEVSSLPPSEHRH---AYTYALERIATQVQAVFNVIKSTPIWIKENKSHYKPRPKQAVYK 119 Query: 103 -------PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEAR 155 + Q+ +FERRL M+ ER+ ++ + T + Q L+ E+ AR Sbjct: 120 QAVQQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTTHAR 178 Query: 156 LARCRHALEKIENRLARLTR 175 L RCR A+ E ++ R+ + Sbjct: 179 LGRCRKAISATEEKIQRVEK 198 >UniRef50_B1KLR2 Primosomal replication protein N'', putative n=21 Tax=Shewanella RepID=B1KLR2_SHEWM Length = 224 Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 40/214 (18%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATL--------SARFDRHLFQTRATTLQACLDE 52 M T+ LL++L Q L Q + RF+ LF L+ C+D+ Sbjct: 1 MTTSELLKRLRAQHKQLEQEVLQHDAKLPKGQRRLLQDTERFNDSLFIQTGAELKPCIDQ 60 Query: 53 AGDNLAALRHAVEQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDSAPPKIA----- 106 ++ L ++ + L E + + A+ R + SL + K Sbjct: 61 ISKSIEQLEKLIKGKISANTILLSCERIQDRFTAVKRALATTSLDVKSAEHQKQMRIAKA 120 Query: 107 -------------------------RWQRKRIQHQDFERRLREMVAERRARLARVTDLVE 141 + + +H ++ + + + ++ L + Sbjct: 121 QQRRRKSHSNSGFDWIAAGVMQNSHQLYEELNKHLNWVKAFEQKIQNLQSELEYCHSADK 180 Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 + E+ RL +CR A+ IE R+ R Sbjct: 181 IKK-QNEILLVHRRLGKCRQAISYIEERIQAFER 213 >UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P3U8_VIBME Length = 210 Score = 87.5 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 15/182 (8%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSAR--FDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 +L L + + R FD LF+ +L++C EA L+ L H Sbjct: 25 FGSATKRLQRLMRHAELIDTQYRHHTRRWFDNQLFKKNVFSLKSCAHEAEQTLSQLHHIC 84 Query: 65 EQQQ--LPQVAWLAEHLAAQLEAIAREASAWSLREWD----------SAPPKIARWQRKR 112 L QV L++ L AQLEA+ R W + ++ + Sbjct: 85 HASSPCLVQVKHLSDRLCAQLEALQRVVDEWENSLQRDGLDSEHPTLAKDMSESQLAEQL 144 Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172 IQHQ +E+RL +V R+ +L + + Q + + + RL RC+ A IE +L Sbjct: 145 IQHQRWEQRLLTLVLNRQYQLEQTSARYYPQA-QQALFLAKQRLNRCQQAKAIIEAQLIN 203 Query: 173 LT 174 L Sbjct: 204 LQ 205 >UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histophilus somni RepID=Q0I4D2_HAES1 Length = 197 Score = 86.3 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 20/193 (10%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M+ + ++ L+ ++ R + + + A+FDR LF +L L E L L Sbjct: 1 MQQSPVIILLKQKVDEFFSRYSHIPSKQKIYAKFDRTLFSQDFESLSFYLKEIRQCLTQL 60 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSL-------------------REWDSA 101 + + + + +E L Q A++ S + RE Sbjct: 61 EKINDDN-VQKYTFYSEKLKGQCNALSEALSQTNAKTNIKFQHNDTSLQSVQERREKQRI 119 Query: 102 PPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161 + + ++ + + L + +R T L ++QT +++ + R RC Sbjct: 120 ALNKLPPRERLSKYYEALQTLNTKLERQRDCFEEATLLQDKQTYSQQIAITQQRKQRCSE 179 Query: 162 ALEKIENRLARLT 174 A+E++E LA L Sbjct: 180 AIEQLEEYLALLD 192 >UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NYK0_9VIBR Length = 182 Score = 82.8 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 10/180 (5%) Query: 5 LLLEKLEGQLATLRQRCAPVSQFAT--LSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62 +L L L Q + A FD+ LF+ ++ L EA + L + Sbjct: 2 KQFGQLSSLLEQLEQEATLLDNQRGEQQQALFDQKLFRCQSKLLTPYTYEAHETLDKILC 61 Query: 63 AVEQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDS-----APPKIARWQRKRIQH 115 L Q +L+E L Q+ AI RE + +LR+ + + + + QH Sbjct: 62 EQSSGSLSPDQAEFLSEKLLWQISAIKRELATTALRQSEPTGKSFSQRNLNELYQSLAQH 121 Query: 116 QDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175 Q +E+RL+ +V + T + +++ + RL RC+ A KIE +++ R Sbjct: 122 QQWEQRLKTLVKNKEQEHKLATPRDKSLAAQ-TLQSAQRRLQRCQQAKIKIEKQISYKER 180 >UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VQB5_ACTSZ Length = 193 Score = 81.3 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 17/187 (9%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62 LL +L+ + L+++ PV + L +FD +F L+ L+E + + Sbjct: 4 QTALLNRLQRLITQLQKQYEPV-KRQILHTKFDPAIFSENFQPLEFYLNEIRHCIEQISQ 62 Query: 63 AVEQQQLPQVAWLAEHLAAQLEAIAREA---------------SAWSLREWDSAPPKIAR 107 + +++ Q A+ +E L+AQ A+ SLRE + Sbjct: 63 -LSPEEVAQTAFFSEKLSAQYTALTDALQFIEKPKAKSAVNFKPVLSLREKRRQQLEQLP 121 Query: 108 WQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167 + + I++ + + L E + ++ + E+ + ++++ R RC A+E +E Sbjct: 122 PRARLIKYYEALQALNEKLNGQKDLQKQCLSEKEKMRIQQQIDITRQRRQRCLDAIEVLE 181 Query: 168 NRLARLT 174 LA Sbjct: 182 EYLAFKE 188 >UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomarina baltica OS145 RepID=A3WNT0_9GAMM Length = 170 Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQF----ATLSARFDRHLFQTRATTLQACLDEAGDNLA 58 T L++ LA LR++ Q F +LF TR+ A ++E + Sbjct: 2 TPTYLQQFSRALAVLREKAQVFDQQKANKRFAEQWFAENLFTTRSQFAVAYVNETEQLIN 61 Query: 59 ALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDF 118 L + + +LAE ++ Q+ +++ +L + P + + Sbjct: 62 KL---ITSDDNERKQYLAEKISEQVLSLS------ALLQNSRPPDADFDLRAQLQAQHGQ 112 Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 + + RL +L +Q + +AY+ RL RC+ A+ ++E ++ Sbjct: 113 LHQTLAKYRQYEIRLRNKAELFQQSGDLVQAQAYQKRLNRCQQAISQVERQIQ 165 >UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CM53_PASMU Length = 184 Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 MK L+ L ++ L + + L RF HLF E L L Sbjct: 1 MKKTELIRILTNKITQLDHK-QRTATEQPLKTRFAPHLFSENNQVFSFYFQELKQTLTQL 59 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPK-------IARWQRKRI 113 +A E + A+ AE L +Q A++ + ++ P + + Sbjct: 60 ENAPET-DIALCAFFAEKLLSQYVALSEALTHTQIKTETFTPTNKATHHVHQLPPRERLE 118 Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 ++ + + L E + + + E++ L ++++ + R A+C A+E +E L Sbjct: 119 KYYEALQALNEKLMSLQDSQQKTQAEQEKKLLGQKIQLTQQRKAKCLVAIETLEEYL 175 >UniRef50_C9R5Z0 Primosomal replication protein N n=2 Tax=Aggregatibacter RepID=C9R5Z0_AGGAD Length = 188 Score = 59.0 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 18/184 (9%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66 +++L+ L R + T+ A+F +LF + + A L A + Sbjct: 6 IQRLKQSLQHFFARYDA-QKEGTVYAKFSANLFTENRQKVAFYFQQIEQTFARLEQA-DP 63 Query: 67 QQLPQVAWLAEHLAAQLEAIAREASAWSL------REWDSAPPKIARWQ---------RK 111 L + + + L+AQ A++ + R+ P + + + Sbjct: 64 SNLEALQFYTQKLSAQCTALSDALTRQQQNDQPFPRKTKEEPKPTGKRRHPVHSLPPRER 123 Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 ++ D+ E + + L + + + +E E R ARC A++ +E L Sbjct: 124 LAKYYDYLASFNEKIQVEQDTLEKAQ-REGRLVNKQMLEQLEQRRARCLEAIDVLEEYLV 182 Query: 172 RLTR 175 + + Sbjct: 183 FVEK 186 >UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XP5_COLP3 Length = 227 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 44 TTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP- 102 ++LQ + + A++ Q Q ++ A A A + + + Sbjct: 91 SSLQRIEQQISALMNAIQSNQTMHQAAQASFDARKNVRVKAAKAAQLKQNDVYNKMAKSV 150 Query: 103 -PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161 + ++ +H +FERRLR+M+ ER + R + L +EV A RL RCR Sbjct: 151 LLTSHQLYQQLSEHHEFERRLRDMITEREQQRIRSKSAN-TEKLSQEVLALHQRLGRCRK 209 Query: 162 ALEKIENRLARLTR 175 A+ IE + + + Sbjct: 210 AISSIERSIEQAEK 223 >UniRef50_B0BNS4 Putative uncharacterized protein n=4 Tax=Actinobacillus pleuropneumoniae RepID=B0BNS4_ACTPJ Length = 177 Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 18/180 (10%) Query: 7 LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66 L L ++Q+ S F +LF + + E L + Sbjct: 3 LTMFSDFLQVIQQKLTVFSPFLEQEVIVKGNLFSQNQKKVSDFIQEIIHTAQLLSQQTTE 62 Query: 67 QQLPQVAWLAEHLAAQLEAI-------------AREASAWSLREWDSAPPKIARWQRKRI 113 + A L Q +A+ ARE S R+ Sbjct: 63 DYAD---FYATKLLRQFDALNHAVFMLEKADLSAREVFTTSFSF--PKNIHALPPARRLN 117 Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173 +++ R L E ++ + T+ E+ T ++E E R +C+ A+E++E +L+++ Sbjct: 118 EYRKALRALNEKISWLLEKSYAATNDAEKNTWQLQIEETEYRKMKCQKAIEELEEKLSKI 177 >UniRef50_P43987 Uncharacterized protein HI0326 n=17 Tax=Haemophilus influenzae RepID=Y326_HAEIN Length = 87 Score = 45.9 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 M L+++L+ ++ L Q + A+FDR LF + L E L + Sbjct: 1 MTVQQLIQRLDQKVQQLYQAHLSKREEKIF-AKFDRTLFSENGQNVSFYLKEINQTLDRI 59 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLE 84 +E +LAE L A + Sbjct: 60 -KTLESNDSNHYNFLAERLLANVP 82 >UniRef50_A8IEQ2 Centriole proteome protein (Fragment) n=2 Tax=cellular organisms RepID=A8IEQ2_CHLRE Length = 3124 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 12/161 (7%) Query: 8 EKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67 L + L + D Q + + + ++ Sbjct: 1765 SSLRRLVDQLHSDVVQLQDEQQRQK--DEQQRQKQEVWAKMQQLQDEQQRQKDEQQRQKD 1822 Query: 68 QLPQVAWLAEHLAAQLEAIAR------EASAWSLREWDSAPPKIARWQRK--RIQHQDFE 119 +L + AE QLE + EA L + + Q+ + Q Q+ E Sbjct: 1823 ELQRQKQEAEAKMQQLEDEQQRQKQEAEAKMQQLEDEQQRQKDEQQRQKDELQRQKQEAE 1882 Query: 120 RRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR 160 +++++ E + + ++ L R+ + EA++ + R Sbjct: 1883 AKMQQL--EDEQQRQKDEQQRQKDELQRQKQEAEAKMQKFR 1921 >UniRef50_A7JWL4 Putative uncharacterized protein n=3 Tax=Mannheimia haemolytica RepID=A7JWL4_PASHA Length = 172 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 12/166 (7%) Query: 14 LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73 +A ++Q + ++ F+T + + F + + + E + L + Q ++ Sbjct: 7 IAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIAEIEKTVELL---LNQTEVLYSE 63 Query: 74 WLAEHLAAQLEAIAREAS-------AWSLREWDSAPPKIARWQ--RKRIQHQDFERRLRE 124 + AE L Q++A+ + P I R ++ +++ R L E Sbjct: 64 FYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNIHRLAPNKRLQEYRKALRALNE 123 Query: 125 MVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170 ++ + + +QTL ++ E R +C A+E +E L Sbjct: 124 KISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLKAIEDLEQEL 169 >UniRef50_B9CW03 Putative uncharacterized protein n=2 Tax=Actinobacillus minor RepID=B9CW03_9PAST Length = 172 Score = 43.6 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%) Query: 10 LEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL 69 ++ L ++ P T A F + ++E ++ L+ Q Sbjct: 4 FSQKIERLLKKFEPF---LTRQAVVSGEYFTKDKALVSQFVEEIKQSVRLLQQ---QDSP 57 Query: 70 PQVAWLAEHLAAQLEAIAREASAWSLREWD----------SAPPKIARWQRKRIQHQDFE 119 AE L Q +A+ + + S + +++ I+++ Sbjct: 58 EYAEVYAEKLLRQFDALNKAVALLSKEKQRESAFRSAYHFPKNVHSLSPEKRLIEYRKAL 117 Query: 120 RRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIEN 168 R L + ++ + + E Q L +++ E R RC A+E++E Sbjct: 118 RALNDKISWLVEKQLSASHHDEYQQLKYQIDETEYRKMRCLAAIEELEE 166 >UniRef50_Q5QWS5 Primosomal replication protein C n=1 Tax=Idiomarina loihiensis RepID=Q5QWS5_IDILO Length = 176 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 15/174 (8%) Query: 7 LEKLEGQLATLRQRCAPVS------QFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60 ++ +E L TL+ R + F LF + + E + L Sbjct: 10 IQHIEQLLNTLQGRAEQIDGENRKKHRQLSENWFSSSLFSQSSNLAVDYVAETQNLFRQL 69 Query: 61 RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120 + + +LAE L+ QLEA+ + P + + Sbjct: 70 Q---KSDNHHAQRYLAEKLSLQLEALNTAF------RANRPPKQQQDHRITAQNQLQQMH 120 Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 + + RL D +++ + RL RC+ A++ +E +++R Sbjct: 121 QQLVTYRDYERRLTENLDTAAAGNNPTMIQSAQQRLNRCQMAIDSLEKKISRYE 174 >UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FAM0_9GAMM Length = 202 Score = 40.9 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 18/184 (9%) Query: 5 LLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64 L L Q+ A ++ A F LF + + + E ++ L+H Sbjct: 19 QQLSALSKQVN--SNHTATINYKLRDRALFYPGLFINKNHDIHQYVAELEKSMIRLQHCF 76 Query: 65 EQ-----------QQLPQVAWLAEHLAAQLEAIAREASAWSLREWD--SAPPKIARWQRK 111 ++ L L E +A Q AI R + P +K Sbjct: 77 DKSFDKPSISSSNDTLSIEQVLLEKVAHQFRAINGVLQQCHFRRGEVKEEPKNYDVIAKK 136 Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171 +Q + L + +A++ R+ +++QQ +++ + RL RC+ A K+ +L Sbjct: 137 LLQKSHY---LYQKLAQQIDYERRLQAIIDQQREPLQLQQTKQRLQRCQVATAKVRQQLQ 193 Query: 172 RLTR 175 R + Sbjct: 194 RYEQ 197 >UniRef50_A9USD4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USD4_MONBE Length = 1411 Score = 40.9 bits (94), Expect = 0.018, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 21/172 (12%) Query: 3 TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62 L+ L + LR R + A L T L + EA + L Sbjct: 480 QQDLIAALTTECEELRTRLEELDATNAARADEIAQL--AAGTQLSS---EAEALIEQLEA 534 Query: 63 AVEQQQLPQVAWLAE--HLAAQLEAIAR---------EASAWSLREWDSAPPKIAR-WQR 110 +++ ++ Q + LA+ L Q+E + + E W LR + R Q+ Sbjct: 535 QLDEHRVEQQSLLAKIHELQLQVEELKQLHSSPEAAFERMQWQLRRTQKVDRQEIRTLQQ 594 Query: 111 KR-IQHQ---DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLAR 158 Q+Q D E+R++ + A+ A A +T+ + L + +++ R Sbjct: 595 DLAAQNQAKVDAEQRVQVLSAQVAALQADMTERDREGQLAQLLQSASGEKER 646 >UniRef50_B8J072 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J072_DESDA Length = 1354 Score = 40.9 bits (94), Expect = 0.020, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 3/151 (1%) Query: 11 EGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP 70 +LA ++ A + D + R A +A D L EQ++L Sbjct: 1034 TRRLAMEQELAALDDEVRAAQVALDTAVHAERGLLALAGAQDAEDFLRQAAAHEEQRKLA 1093 Query: 71 QVAWLAE---HLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA 127 Q E LAA + + ++ + A + Q Q+ E+ L + V+ Sbjct: 1094 QRRLDLEDALRLAADKCPLEDFLQQFENENRETQENRCAEITAELAQLQEKEQELADRVS 1153 Query: 128 ERRARLARVTDLVEQQTLHREVEAYEARLAR 158 RAR+ ++ E L ++ E + R Sbjct: 1154 SLRARVETLSHDDELARLQQQAATLEESMQR 1184 >UniRef50_B5JPV5 Methyltransferase domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPV5_9BACT Length = 476 Score = 40.5 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 38/209 (18%) Query: 1 MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEA------- 53 + + +L+ Q+ TL++ + + A F++HL Q + +L++ L+E Sbjct: 250 LPAKRQISELKSQIDTLKESSL---KRKSEVANFEKHL-QQNSNSLKSGLEEIIKRSERA 305 Query: 54 GDNLAALRHAVEQQQLPQVAWLAEH--LAAQLEAIAREASAWSLREWDSAPPKIARWQRK 111 + +L+ +E+Q+ ++ E+ L Q ++ + L+ + Sbjct: 306 EEQFNSLQTDIEKQRSCLESYREENANLTNQNTSLQSDLREKGLKIETLEEECDRVREEL 365 Query: 112 RIQHQDFERR------LREMVAERRAR------------------LARVTDLVEQQTLHR 147 + + E++ L +++ + + L ++ L Sbjct: 366 KASQKSLEQKNKENDSLLKVIDNIEDQNAEAQVILSTKLKLIAELENKQHSLFKESELKE 425 Query: 148 -EVEAYEARLARCRHALEKIENRLARLTR 175 E++ RL +C + + R L + Sbjct: 426 KELDDLHTRLNQCSDERDNLSERYQHLKQ 454 >UniRef50_Q2PDZ3 CG6664, isoform D n=17 Tax=Diptera RepID=Q2PDZ3_DROME Length = 571 Score = 40.1 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 13/167 (7%) Query: 8 EKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67 E+L+ ++ +L Q+ + F+T+ + E L ++ + Sbjct: 64 EQLQKRIESLTQQNKVLKAELDT--------FKTKCKV----VQEENRCLKQASVIIQAK 111 Query: 68 QLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA 127 + +++ L +++A+ +E + RK Q E+ E Sbjct: 112 AEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLDQ-LRQEKCKLEQTL 170 Query: 128 ERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174 E+ + + + L E + + L + R + ++EN L + Sbjct: 171 EQEQECLVNKLMRKIEKLQAETDNKQTNLEQLRREMVELENTLEQEQ 217 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.303 0.130 0.311 Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 785,041,102 Number of Sequences: 3077464 Number of extensions: 24801056 Number of successful extensions: 523121 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1385 Number of HSP's successfully gapped in prelim test: 4448 Number of HSP's that attempted gapping in prelim test: 407379 Number of HSP's gapped (non-prelim): 61981 length of query: 175 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 55 effective length of database: 671,100,676 effective search space: 36910537180 effective search space used: 36910537180 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.4 bits) S2: 88 (38.5 bits)