BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (175 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent...   341   5e-93
UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen...   110   2e-23
UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono...   106   3e-22
UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac...    99   5e-20
UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En...    96   7e-19
UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote...    95   9e-19
UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis...    83   3e-15
UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto...    68   1e-10
UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5...    64   2e-09
UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv...    60   3e-08
UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr...    56   5e-07
UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio...    55   9e-07
UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom...    50   3e-05
UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1...    50   4e-05
UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri...    43   0.005
UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ...    41   0.015

>UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae
           RepID=PRIC_ECOLI
          Length = 175

 Score =  341 bits (875), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL
Sbjct: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER
Sbjct: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR
Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175


>UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae
           RepID=D2TWE3_9ENTR
          Length = 204

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 5/176 (2%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LL  LE Q+  L ++  P++  A +++RFD+ LF  ++  L  CL E   +   L
Sbjct: 23  MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPK----IARWQRKRIQHQ 116
           ++AV   +L QV +L E + AQ+ AI RE++  +LRE ++   +    + R++R  +QHQ
Sbjct: 83  KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYER-LVQHQ 141

Query: 117 DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           D+ERRL  M+ +R  +L +    V  Q L +E+ A   RL RCR AL +IE  + R
Sbjct: 142 DYERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIER 197


>UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter
           RepID=C9XXU0_CROTZ
          Length = 171

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M+T LLL+ L+ +LATLR+   P++     S RFDR LF      L   L EA ++LA L
Sbjct: 1   MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AV Q    +VAWLAE LAAQ+EA+ REA+  +LR  ++A     R   +  ++Q++ER
Sbjct: 61  EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL  M   R  R A   D      L RE++A   RLARCR A+ + E  L R+TR
Sbjct: 121 RLLAMKTGRERRCAENHD----PQLAREIDALNERLARCRTAIARTERALERITR 171


>UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae
           RepID=D1P4G4_9ENTR
          Length = 182

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LLE L+ Q+  L  R  P+       +RFD  LF  ++T L  C  E  +    L
Sbjct: 1   MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSA----PPKIARWQRKRIQHQ 116
            H+V  +   QV +L E +  Q++AI+RE S  SLRE +S+      ++  ++R   QHQ
Sbjct: 61  CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLS-QHQ 119

Query: 117 DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167
           D+ERRL+ MV+E+   L+ +TD   Q    +E+     RL RCR AL +IE
Sbjct: 120 DYERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIE 170


>UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae
           RepID=D2BUL0_DICD5
          Length = 183

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 94/178 (52%), Gaps = 6/178 (3%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M T  LL  L  Q+ TL Q   P++      +RFDR LF    T L   LDE   N   L
Sbjct: 1   MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           +  V++Q+  +VA++AE L  Q+ A+ RE +   LRE +   P      +K  ++Q +ER
Sbjct: 61  QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120

Query: 121 RLREMVAERRARLARVTDLV------EQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           RL  M+ +R + LA  + L       EQQ L RE+ A E RL RCR AL K+E ++ R
Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIER 178


>UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus
           RepID=B4EU75_PROMH
          Length = 180

 Score = 95.1 bits (235), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK    L   + Q+  L +  AP++     +  FD  LF  R+ +L   + +  DN   L
Sbjct: 1   MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117
              VE Q+  QV +LA  +  Q+EA+ RE S  +LR+ +   S   K     +K  QHQD
Sbjct: 61  ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           +ERRL+ M+ +R   L +    V QQ L +E+ A E RLARC+ AL  IE  + R
Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIER 175


>UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NV63_SODGM
          Length = 177

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 85/170 (50%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M  + L+  L  +L  L  R           +RFD  LF  R   LQ  L E+   L+ L
Sbjct: 1   MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AVEQ +  +VAWLA+ L  Q+ A++RE +  +LR    A         +  +HQD+ER
Sbjct: 61  TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           RL  M+ +R +      DL   + L +E+ A E RL RCR AL ++E ++
Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQI 170


>UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q3V5_9ENTR
          Length = 170

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 33  RFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASA 92
           RFD  LF  + T L   L E   N+A L  A   Q + +  WLA+ +  Q+ A+ RE  +
Sbjct: 33  RFDAQLFHCKGTRLADYLQELEHNVAQLTAA--DQDVTRRQWLADKVVDQIAALQRECQS 90

Query: 93  WSLREWDSAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAY 152
             LR     P    + Q+KR +++ +E RL  M+AER   L R   L  QQ L RE+E  
Sbjct: 91  QQLRVARERPRTDGK-QQKREEYRGYEIRLLGMIAEREQHLQRAETLSIQQQLIRELEQL 149

Query: 153 EARLARCRHALEKIE 167
             RL RCR A+ K+E
Sbjct: 150 HLRLGRCRQAIHKLE 164


>UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium
           RepID=D0YZ22_LISDA
          Length = 183

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 13/149 (8%)

Query: 34  FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQ---LP-QVAWLAEHLAAQLEAIARE 89
           FD  LF+ R+  L  C++E    +  LR   EQQ    LP +   + E + AQ++A+ RE
Sbjct: 33  FDEQLFRCRSKLLTPCVNEIASEVFKLRQ--EQQSGRLLPTRTQHICEKIVAQIQAVQRE 90

Query: 90  ASAWSLREWDSAPPKIARWQ------RKRIQHQDFERRLREMVAERRARLARVTDLVEQQ 143
            +  S+R+ +    + A +Q      +   QH+D+ER+L+  + ++   L++ +D   QQ
Sbjct: 91  FATISIRK-NEPKYRSAHYQPLNEIYQNLNQHKDWERQLKTKLRDKEFELSQCSDWQLQQ 149

Query: 144 TLHREVEAYEARLARCRHALEKIENRLAR 172
            L  EV   E R++RC+ AL KIE  + +
Sbjct: 150 KLQHEVLVLEGRVSRCQQALTKIEQTIMK 178


>UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EJ81_ALISL
          Length = 186

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 7/145 (4%)

Query: 34  FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL-PQVA-WLAEHLAAQLEAIAREAS 91
           FD  LF  R+  L  C++E    L +++   +   L PQ A +L + L AQ+EAI RE +
Sbjct: 34  FDERLFGCRSRYLIPCINETKATLQSIQREEKANMLTPQRAEYLTQMLLAQIEAIQREIA 93

Query: 92  AWSLREWDSAPPK-----IARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146
              +R  +  P       I+   +   QHQ++ RRL +MV E+   + +     +QQ L 
Sbjct: 94  TQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSRRLIQMVQEQEQNVNKCHSFSQQQELQ 153

Query: 147 REVEAYEARLARCRHALEKIENRLA 171
           + +   E RL RC+ A+ ++E ++ 
Sbjct: 154 KVLLTTEKRLQRCKTAMIRLEQQIT 178


>UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae
           RepID=A5F750_VIBC3
          Length = 187

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 34  FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQV--AWLAEHLAAQLEAIAREAS 91
           FD  LF      L  C++EA   L AL    E  +L  +   +L+E L AQ+ A+ RE S
Sbjct: 38  FDEVLFHCHGKLLTPCVEEAHSTLQALIREKESGRLTALRAEYLSERLLAQIAALTRELS 97

Query: 92  AWSLREWDSAP-----PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146
             ++R  +  P       I    ++  QHQD+ERRL ++V + +A L       E+    
Sbjct: 98  TQNVRRNEPKPHAYFKKPINELYQELAQHQDWERRLMDLVRD-KALLLEQASATEKAAAQ 156

Query: 147 REVEAYEARLARCRHALEKIENRL 170
           + +   E RL RCR A  KIE R+
Sbjct: 157 QALLQSEQRLNRCREAKIKIEKRI 180


>UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri
           RepID=B5FD93_VIBFM
          Length = 183

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 34  FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP--QVAWLAEHLAAQLEAIAREAS 91
           FD  LF  R+  L  C++EA   L +++   +   L   +  +L + L AQ+EAI RE +
Sbjct: 33  FDERLFGCRSRYLVPCINEAKATLGSIQREEKANILTAQRAEYLTQMLVAQIEAIQREVA 92

Query: 92  AWSLREWDSAPPK-----IARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLH 146
              +R  +  P       I+   +   QHQ++ERRL +MV ++   + +     +QQ L 
Sbjct: 93  TQRIRSNEPRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQDLQ 152

Query: 147 REVEAYEARLARCRHALEKIENRLA 171
           +++ A E RL RC+ A+ ++E ++ 
Sbjct: 153 QKLLATEKRLQRCKEAMIRLEQQIT 177


>UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales
           RepID=Q3IIU3_PSEHT
          Length = 202

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 44/203 (21%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAGDNL 57
            +KL  Q+ATL+Q+     +    S           FDR +F T++  L   + E  D +
Sbjct: 6   FDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIEDEV 65

Query: 58  AAL-----RHAVEQQQLPQVAWLAEHLAAQLEAI---AREASAWSLREWDS--AP-PKIA 106
           ++L     RHA          +  E +A Q++A+    +    W ++E  S   P PK A
Sbjct: 66  SSLPPSEHRHAY--------TYALERIATQVQAVFNVIKSTPIW-IKENKSHYKPRPKQA 116

Query: 107 RWQR--------------KRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAY 152
            +++              +  Q+ +FERRL  M+ ER+ ++ + T   + Q L+ E+   
Sbjct: 117 VYKQAVQQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTT 175

Query: 153 EARLARCRHALEKIENRLARLTR 175
            ARL RCR A+   E ++ R+ +
Sbjct: 176 HARLGRCRKAISATEEKIQRVEK 198


>UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio
           metschnikovii CIP 69.14 RepID=C9P3U8_VIBME
          Length = 210

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 13/152 (8%)

Query: 34  FDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQ--LPQVAWLAEHLAAQLEAIAREAS 91
           FD  LF+    +L++C  EA   L+ L H        L QV  L++ L AQLEA+ R   
Sbjct: 54  FDNQLFKKNVFSLKSCAHEAEQTLSQLHHICHASSPCLVQVKHLSDRLCAQLEALQRVVD 113

Query: 92  AW--SLRE--WDSAPPKIARWQRKR------IQHQDFERRLREMVAERRARLARVTDLVE 141
            W  SL+    DS  P +A+   +       IQHQ +E+RL  +V  R+ +L + +    
Sbjct: 114 EWENSLQRDGLDSEHPTLAKDMSESQLAEQLIQHQRWEQRLLTLVLNRQYQLEQTSARYY 173

Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARL 173
            Q   + +   + RL RC+ A   IE +L  L
Sbjct: 174 PQA-QQALFLAKQRLNRCQQAKAIIEAQLINL 204


>UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales
           RepID=B7VM24_VIBSL
          Length = 196

 Score = 42.7 bits (99), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%)

Query: 7   LEKLEGQLATLRQRCAPV--SQFATLSARFDRHLFQTRATTL--QACLDEAGDNLAALRH 62
             KL+  + TL   C+ V  S+ A   A FDR LF+  ++ L   A   +A  N      
Sbjct: 18  FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77

Query: 63  AVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120
           A  Q    +  +L E L  Q+ AI RE +   LR      +   +     +  QHQD+++
Sbjct: 78  ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYE---ARLARCRHALEKIENRLARL 173
           RL ++V  R+       D   + +  +  EA++    RL RC  +++ IE RL  L
Sbjct: 138 RLVDLVRVRKLAF----DSAPRHSKKKADEAWQLAKERLERCEDSMKNIE-RLINL 188


>UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia
           psychrerythraea 34H RepID=Q47XP5_COLP3
          Length = 227

 Score = 41.2 bits (95), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167
           +H +FERRLR+M+ ER  +  R +     + L +EV A   RL RCR A+  IE
Sbjct: 163 EHHEFERRLRDMITEREQQRIR-SKSANTEKLSQEVLALHQRLGRCRKAISSIE 215


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen...   157   2e-37
UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent...   152   4e-36
UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono...   152   6e-36
UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis...   151   8e-36
UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac...   145   7e-34
UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote...   144   9e-34
UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En...   138   6e-32
UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5...   125   6e-28
UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio...   120   1e-26
UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr...   120   2e-26
UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv...   114   1e-24
UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto...   105   7e-22
UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1...    98   1e-19
UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom...    97   2e-19

Sequences not found previously or not previously below threshold:

UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri...    92   8e-18
UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1...    70   3e-11
UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio...    60   3e-08
UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ...    55   1e-06
UniRef50_B1KLR2 Primosomal replication protein N'', putative n=2...    53   4e-06
UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannhei...    52   8e-06
UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=...    50   4e-05
UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q...    47   3e-04
UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinob...    45   0.001
UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomar...    45   0.001
UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histoph...    44   0.002
UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteur...    44   0.002
UniRef50_C6MB14 MscS Mechanosensitive ion channel n=1 Tax=Nitros...    42   0.007
UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritel...    42   0.010
UniRef50_A9V8I0 Predicted protein n=1 Tax=Monosiga brevicollis R...    41   0.014
UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteur...    40   0.025
UniRef50_Q4Q0D8 Flagellum transition zone component, putative n=...    40   0.040
UniRef50_B7MRW2 Putative tail protein from prophage; putative ta...    39   0.055
UniRef50_C3Y243 Putative uncharacterized protein n=1 Tax=Branchi...    39   0.100

>UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae
           RepID=D2TWE3_9ENTR
          Length = 204

 Score =  157 bits (396), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 3/175 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LL  LE Q+  L ++  P++  A +++RFD+ LF  ++  L  CL E   +   L
Sbjct: 23  MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP---PKIARWQRKRIQHQD 117
           ++AV   +L QV +L E + AQ+ AI RE++  +LRE ++      K      + +QHQD
Sbjct: 83  KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYERLVQHQD 142

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           +ERRL  M+ +R  +L +    V  Q L +E+ A   RL RCR AL +IE  + R
Sbjct: 143 YERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIER 197


>UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae
           RepID=PRIC_ECOLI
          Length = 175

 Score =  152 bits (384), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL
Sbjct: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER
Sbjct: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR
Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175


>UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter
           RepID=C9XXU0_CROTZ
          Length = 171

 Score =  152 bits (383), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M+T LLL+ L+ +LATLR+   P++     S RFDR LF      L   L EA ++LA L
Sbjct: 1   MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AV Q    +VAWLAE LAAQ+EA+ REA+  +LR  ++A     R   +  ++Q++ER
Sbjct: 61  EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL  M   R  R A   D      L RE++A   RLARCR A+ + E  L R+TR
Sbjct: 121 RLLAMKTGRERRCAENHD----PQLAREIDALNERLARCRTAIARTERALERITR 171


>UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NV63_SODGM
          Length = 177

 Score =  151 bits (382), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M  + L+  L  +L  L  R           +RFD  LF  R   LQ  L E+   L+ L
Sbjct: 1   MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AVEQ +  +VAWLA+ L  Q+ A++RE +  +LR    A         +  +HQD+ER
Sbjct: 61  TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL  M+ +R +      DL   + L +E+ A E RL RCR AL ++E ++    R
Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQIECRER 175


>UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae
           RepID=D1P4G4_9ENTR
          Length = 182

 Score =  145 bits (365), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 3/174 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LLE L+ Q+  L  R  P+       +RFD  LF  ++T L  C  E  +    L
Sbjct: 1   MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDS---APPKIARWQRKRIQHQD 117
            H+V  +   QV +L E +  Q++AI+RE S  SLRE +S   A  +      +  QHQD
Sbjct: 61  CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLSQHQD 120

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
           +ERRL+ MV+E+   L+ +TD   Q    +E+     RL RCR AL +IE  + 
Sbjct: 121 YERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIEKAIE 174


>UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus
           RepID=B4EU75_PROMH
          Length = 180

 Score =  144 bits (364), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK    L   + Q+  L +  AP++     +  FD  LF  R+ +L   + +  DN   L
Sbjct: 1   MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117
              VE Q+  QV +LA  +  Q+EA+ RE S  +LR+ +   S   K     +K  QHQD
Sbjct: 61  ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           +ERRL+ M+ +R   L +    V QQ L +E+ A E RLARC+ AL  IE  + R  
Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIERQE 177


>UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae
           RepID=D2BUL0_DICD5
          Length = 183

 Score =  138 bits (348), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M T  LL  L  Q+ TL Q   P++      +RFDR LF    T L   LDE   N   L
Sbjct: 1   MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           +  V++Q+  +VA++AE L  Q+ A+ RE +   LRE +   P      +K  ++Q +ER
Sbjct: 61  QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120

Query: 121 RLREMVAERRARLARVTDLV------EQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           RL  M+ +R + LA  + L       EQQ L RE+ A E RL RCR AL K+E ++ R  
Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIERQE 180

Query: 175 R 175
           +
Sbjct: 181 Q 181


>UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium
           RepID=D0YZ22_LISDA
          Length = 183

 Score =  125 bits (314), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 7   LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
           L + +  +A L+ + A + +         FD  LF+ R+  L  C++E    +  LR   
Sbjct: 4   LTRFDTLIAQLKTQAANLDRTRGEANKPLFDEQLFRCRSKLLTPCVNEIASEVFKLRQEQ 63

Query: 65  EQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117
           +  +L   +   + E + AQ++A+ RE +  S+R+ +          +    +   QH+D
Sbjct: 64  QSGRLLPTRTQHICEKIVAQIQAVQREFATISIRKNEPKYRSAHYQPLNEIYQNLNQHKD 123

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           +ER+L+  + ++   L++ +D   QQ L  EV   E R++RC+ AL KIE  + +  R
Sbjct: 124 WERQLKTKLRDKEFELSQCSDWQLQQKLQHEVLVLEGRVSRCQQALTKIEQTIMKRER 181


>UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri
           RepID=B5FD93_VIBFM
          Length = 183

 Score =  120 bits (302), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
              +E  L  L +  A + +         FD  LF  R+  L  C++EA   L +++   
Sbjct: 4   FTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREE 63

Query: 65  EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117
           +   L   +  +L + L AQ+EAI RE +   +R  +  P       I+   +   QHQ+
Sbjct: 64  KANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQE 123

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
           +ERRL +MV ++   + +     +QQ L +++ A E RL RC+ A+ ++E ++ 
Sbjct: 124 WERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQIT 177


>UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae
           RepID=A5F750_VIBC3
          Length = 187

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 10/177 (5%)

Query: 8   EKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVE 65
            K    L  L+   A + +         FD  LF      L  C++EA   L AL    E
Sbjct: 10  SKFHTILNELKHSAAQLDRQRGEHHRPLFDEVLFHCHGKLLTPCVEEAHSTLQALIREKE 69

Query: 66  QQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAP-----PKIARWQRKRIQHQDF 118
             +L   +  +L+E L AQ+ A+ RE S  ++R  +  P       I    ++  QHQD+
Sbjct: 70  SGRLTALRAEYLSERLLAQIAALTRELSTQNVRRNEPKPHAYFKKPINELYQELAQHQDW 129

Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           ERRL ++V ++   L + +   E+    + +   E RL RCR A  KIE R+    R
Sbjct: 130 ERRLMDLVRDKALLLEQASA-TEKAAAQQALLQSEQRLNRCREAKIKIEKRITTQER 185


>UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EJ81_ALISL
          Length = 186

 Score =  114 bits (286), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 32  ARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP--QVAWLAEHLAAQLEAIARE 89
             FD  LF  R+  L  C++E    L +++   +   L   +  +L + L AQ+EAI RE
Sbjct: 32  PLFDERLFGCRSRYLIPCINETKATLQSIQREEKANMLTPQRAEYLTQMLLAQIEAIQRE 91

Query: 90  ASAWSLREWDSAPP-----KIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQT 144
            +   +R  +  P       I+   +   QHQ++ RRL +MV E+   + +     +QQ 
Sbjct: 92  IATQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSRRLIQMVQEQEQNVNKCHSFSQQQE 151

Query: 145 LHREVEAYEARLARCRHALEKIENRLA 171
           L + +   E RL RC+ A+ ++E ++ 
Sbjct: 152 LQKVLLTTEKRLQRCKTAMIRLEQQIT 178


>UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q3V5_9ENTR
          Length = 170

 Score =  105 bits (262), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 3/171 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M      ++L+  L  LRQ+ A     +    RFD  LF  + T L   L E   N+A L
Sbjct: 1   MPLPRPQQRLQLTLQLLRQQIAQQPDGSCRQPRFDAQLFHCKGTRLADYLQELEHNVAQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             A   Q + +  WLA+ +  Q+ A+ RE  +  LR     P    + Q+KR +++ +E 
Sbjct: 61  TAA--DQDVTRRQWLADKVVDQIAALQRECQSQQLRVARERPRTDGK-QQKREEYRGYEI 117

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
           RL  M+AER   L R   L  QQ L RE+E    RL RCR A+ K+E +  
Sbjct: 118 RLLGMIAEREQHLQRAETLSIQQQLIRELEQLHLRLGRCRQAIHKLELQFT 168


>UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio
           metschnikovii CIP 69.14 RepID=C9P3U8_VIBME
          Length = 210

 Score = 97.9 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSAR--FDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
                 +L  L +    +        R  FD  LF+    +L++C  EA   L+ L H  
Sbjct: 25  FGSATKRLQRLMRHAELIDTQYRHHTRRWFDNQLFKKNVFSLKSCAHEAEQTLSQLHHIC 84

Query: 65  EQQQ--LPQVAWLAEHLAAQLEAIAREASAW--SLREW--DSAPPKIARWQRK------R 112
                 L QV  L++ L AQLEA+ R    W  SL+    DS  P +A+   +       
Sbjct: 85  HASSPCLVQVKHLSDRLCAQLEALQRVVDEWENSLQRDGLDSEHPTLAKDMSESQLAEQL 144

Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           IQHQ +E+RL  +V  R+ +L + +     Q   + +   + RL RC+ A   IE +L  
Sbjct: 145 IQHQRWEQRLLTLVLNRQYQLEQTSARYYPQA-QQALFLAKQRLNRCQQAKAIIEAQLIN 203

Query: 173 LT 174
           L 
Sbjct: 204 LQ 205


>UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales
           RepID=Q3IIU3_PSEHT
          Length = 202

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 32/197 (16%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAGDNL 57
            +KL  Q+ATL+Q+     +    S           FDR +F T++  L   + E  D +
Sbjct: 6   FDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIEDEV 65

Query: 58  AALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSL-----REWDSAPPKIARWQR-- 110
           ++L  +  +       +  E +A Q++A+     +  +     +      PK A +++  
Sbjct: 66  SSLPPSEHRH---AYTYALERIATQVQAVFNVIKSTPIWIKENKSHYKPRPKQAVYKQAV 122

Query: 111 ------------KRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLAR 158
                       +  Q+ +FERRL  M+ ER+ ++ + T   + Q L+ E+    ARL R
Sbjct: 123 QQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTTHARLGR 181

Query: 159 CRHALEKIENRLARLTR 175
           CR A+   E ++ R+ +
Sbjct: 182 CRKAISATEEKIQRVEK 198


>UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales
           RepID=B7VM24_VIBSL
          Length = 196

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 7/170 (4%)

Query: 7   LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
             KL+  + TL   C+ V +       A FDR LF+  ++ L     E       +    
Sbjct: 18  FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77

Query: 65  EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120
              QL   +  +L E L  Q+ AI RE +   LR      +   +     +  QHQD+++
Sbjct: 78  ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           RL ++V  R+           ++      +  + RL RC  +++ IE  +
Sbjct: 138 RLVDLVRVRKLAFDSA-PRHSKKKADEAWQLAKERLERCEDSMKNIERLI 186


>UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NYK0_9VIBR
          Length = 182

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK    L  L  QL                 A FD+ LF+ ++  L     EA + L  +
Sbjct: 1   MKQFGQLSSLLEQLEQEATLLDNQRGEQ-QQALFDQKLFRCQSKLLTPYTYEAHETLDKI 59

Query: 61  RHAVEQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDS-----APPKIARWQRKRI 113
                   L   Q  +L+E L  Q+ AI RE +  +LR+ +      +   +    +   
Sbjct: 60  LCEQSSGSLSPDQAEFLSEKLLWQISAIKRELATTALRQSEPTGKSFSQRNLNELYQSLA 119

Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173
           QHQ +E+RL+ +V  +       T   +       +++ + RL RC+ A  KIE +++  
Sbjct: 120 QHQQWEQRLKTLVKNKEQEHKLATPRDKSLAAQ-TLQSAQRRLQRCQQAKIKIEKQISYK 178

Query: 174 TR 175
            R
Sbjct: 179 ER 180


>UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7K7_9VIBR
          Length = 171

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 7   LEKLEGQLATLRQRCAPVS--QFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
           L +++ +L  L Q                FD HLF      LQ C+ EA  NL  +    
Sbjct: 3   LSEVKARLKQLHQDAQEFDFRNRGHKKPLFDEHLFSASNLLLQPCVIEAERNLDKIITLS 62

Query: 65  EQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDS-APPKIARWQRKRIQHQDFERRL 122
           +Q      + +       QLEAI R     +     +     + + +    QHQ +E++L
Sbjct: 63  KQGISGSSSEIWVTKFTEQLEAIERVLLIANTHTDTALECKSLEQLRADLKQHQVWEQKL 122

Query: 123 REMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
             +V ++   L      ++ QT   ++ + E RL RCR+A+  I++ + +  R
Sbjct: 123 CTLVRQQEQCL------IDDQTTKPQLISTEQRLQRCRNAMNAIQHTINQKMR 169


>UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia
           psychrerythraea 34H RepID=Q47XP5_COLP3
          Length = 227

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 104 KIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHAL 163
              +  ++  +H +FERRLR+M+ ER  +  R       + L +EV A   RL RCR A+
Sbjct: 153 TSHQLYQQLSEHHEFERRLRDMITEREQQRIRSKS-ANTEKLSQEVLALHQRLGRCRKAI 211

Query: 164 EKIENRLARLTR 175
             IE  + +  +
Sbjct: 212 SSIERSIEQAEK 223


>UniRef50_B1KLR2 Primosomal replication protein N'', putative n=21 Tax=Shewanella
           RepID=B1KLR2_SHEWM
          Length = 224

 Score = 53.2 bits (126), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 40/214 (18%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATL--------SARFDRHLFQTRATTLQACLDE 52
           M T+ LL++L  Q   L Q                   + RF+  LF      L+ C+D+
Sbjct: 1   MTTSELLKRLRAQHKQLEQEVLQHDAKLPKGQRRLLQDTERFNDSLFIQTGAELKPCIDQ 60

Query: 53  AGDNLAALRHAVEQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDSAPPKIAR---- 107
              ++  L   ++ +       L  E +  +  A+ R  +  SL    +   K  R    
Sbjct: 61  ISKSIEQLEKLIKGKISANTILLSCERIQDRFTAVKRALATTSLDVKSAEHQKQMRIAKA 120

Query: 108 --------------------------WQRKRIQHQDFERRLREMVAERRARLARVTDLVE 141
                                        +  +H ++ +   + +   ++ L       +
Sbjct: 121 QQRRRKSHSNSGFDWIAAGVMQNSHQLYEELNKHLNWVKAFEQKIQNLQSELEYCHSADK 180

Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
            +    E+     RL +CR A+  IE R+    R
Sbjct: 181 IKK-QNEILLVHRRLGKCRQAISYIEERIQAFER 213


>UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UQ3_MANSM
          Length = 186

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 4   ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63
             L+E+L+ ++  L  + A  S     +  FDR LF     + Q   D+    LA +   
Sbjct: 5   TALIEQLQAKVQQLTLQFAAFSDKKIYAK-FDRTLFSEDFESGQFYFDQIQHTLAQI-AG 62

Query: 64  VEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQR------------K 111
           +++ ++PQ+ + +E L AQ  A++   +  + R+    P   ++ ++            +
Sbjct: 63  LKETEIPQIQFFSEKLLAQCTALSDAINQNNGRKTAPTPKIPSQREKIKHELNQLPPRER 122

Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
            +++ +  + L E + E   +     +  ++     +++    R  RC  A+E +E  L
Sbjct: 123 LVRYYEALQALNEKINELEDKRDTAHNEQQKAGYQHQIDITLPRRKRCLEAIEVLEEYL 181


>UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=Psychromonas
           RepID=A1SWQ6_PSYIN
          Length = 188

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFATLSAR----FDRHLFQTRATTLQACLDEAGDNLA 58
             L +++L  QL  L +RC  + +  + +      F+ H+F  R  TL   + +      
Sbjct: 7   KNLPIDQLNRQLKVLSKRCEVLDESVSQTENKCFVFEVHIFPKRCLTLLGYIKQIEHTAK 66

Query: 59  ALRHAVEQQQLPQ-VAWLAEHLAAQLEAIAR-----EASAWSLREWDSAPPKIARWQRKR 112
           +L++A+++      +A+       Q + + +     E     +     +  K   +Q+ +
Sbjct: 67  SLQNALDKNLPEALIAFECTLFIDQFQVLLQLVQSLEKGEADILYKSYSSIKENIYQQLQ 126

Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
            Q+  +E RL  M+AE+   +   ++  ++  +  ++E  + R  +C    + +E +  
Sbjct: 127 KQYH-YEERLLNMIAEQEELMTH-SNAQQKIDIKEKIEVLKGRYQKCNSYTQMLEFKFQ 183


>UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q6CCK7_YARLI
          Length = 736

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 3/163 (1%)

Query: 14  LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73
           + TL +         +      + L +  +  L +   E  +  + +   ++Q    +  
Sbjct: 484 VTTLLESLTTAQMTLSEEKSKTKKLRKDYSKRLASIRQEIENTKSKMESNLKQDSKSR-- 541

Query: 74  WLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA-ERRAR 132
              E L   L A+  E +       +            + + ++FE R +++   E+ A+
Sbjct: 542 HKIEQLQLSLPALEEELAMKQGEFEELNETVAGVSAAHKAKKKEFEERQQQLTKLEKEAQ 601

Query: 133 LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
             +     ++ +  +EV   + +L R +    K  N ++R+ R
Sbjct: 602 KLKKEADEKEASFQQEVVQLKTKLDRLQGRRAKAANDVSRVER 644


>UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VQB5_ACTSZ
          Length = 193

 Score = 45.1 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 17/183 (9%)

Query: 4   ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63
             LL +L+  +  L+++  PV +   L  +FD  +F      L+  L+E    +  +   
Sbjct: 5   TALLNRLQRLITQLQKQYEPV-KRQILHTKFDPAIFSENFQPLEFYLNEIRHCIEQISQ- 62

Query: 64  VEQQQLPQVAWLAEHLAAQLEAIAREA---------------SAWSLREWDSAPPKIARW 108
           +  +++ Q A+ +E L+AQ  A+                      SLRE      +    
Sbjct: 63  LSPEEVAQTAFFSEKLSAQYTALTDALQFIEKPKAKSAVNFKPVLSLREKRRQQLEQLPP 122

Query: 109 QRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIEN 168
           + + I++ +  + L E +  ++    +     E+  + ++++    R  RC  A+E +E 
Sbjct: 123 RARLIKYYEALQALNEKLNGQKDLQKQCLSEKEKMRIQQQIDITRQRRQRCLDAIEVLEE 182

Query: 169 RLA 171
            LA
Sbjct: 183 YLA 185


>UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomarina baltica OS145
           RepID=A3WNT0_9GAMM
          Length = 170

 Score = 45.1 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFA----TLSARFDRHLFQTRATTLQACLDEAGDNLA 58
           T   L++    LA LR++     Q           F  +LF TR+    A ++E    + 
Sbjct: 2   TPTYLQQFSRALAVLREKAQVFDQQKANKRFAEQWFAENLFTTRSQFAVAYVNETEQLIN 61

Query: 59  ALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDF 118
            L   +      +  +LAE ++ Q+ +++      +L +    P      + +       
Sbjct: 62  KL---ITSDDNERKQYLAEKISEQVLSLS------ALLQNSRPPDADFDLRAQLQAQHGQ 112

Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
             +      +   RL    +L +Q     + +AY+ RL RC+ A+ ++E ++ 
Sbjct: 113 LHQTLAKYRQYEIRLRNKAELFQQSGDLVQAQAYQKRLNRCQQAISQVERQIQ 165


>UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histophilus somni
           RepID=Q0I4D2_HAES1
          Length = 197

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 20/193 (10%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M+ + ++  L+ ++     R + +     + A+FDR LF     +L   L E    L  L
Sbjct: 1   MQQSPVIILLKQKVDEFFSRYSHIPSKQKIYAKFDRTLFSQDFESLSFYLKEIRQCLTQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASA----------------WSLREWDSAPPK 104
               +   + +  + +E L  Q  A++   S                  S++E       
Sbjct: 61  EKINDDN-VQKYTFYSEKLKGQCNALSEALSQTNAKTNIKFQHNDTSLQSVQERREKQRI 119

Query: 105 IARW---QRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161
                  + +  ++ +  + L   +  +R      T L ++QT  +++   + R  RC  
Sbjct: 120 ALNKLPPRERLSKYYEALQTLNTKLERQRDCFEEATLLQDKQTYSQQIAITQQRKQRCSE 179

Query: 162 ALEKIENRLARLT 174
           A+E++E  LA L 
Sbjct: 180 AIEQLEEYLALLD 192


>UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteurella dagmatis ATCC
           43325 RepID=C9PN53_9PAST
          Length = 184

 Score = 44.3 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M    L+ +L  ++  L Q+          + + + HLF     T     +E    L  L
Sbjct: 1   MTKTELIAQLSQKVDQLYQQVGAKKDQRL-TYKLEAHLFSEHYQTYTFYFNEIKQTLTQL 59

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------QRKRIQ 114
              +++Q L    +L E   +Q  AI+        ++  +  P+  +       + +  +
Sbjct: 60  DK-IDEQDLELCRFLVEKFLSQCTAISDSLLLKKNQQTTTFTPQNKQDIHRLPPRERLAK 118

Query: 115 HQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           + +    L + + + + R  + TD  +Q  L + +   + R  +C +A+E +E  L
Sbjct: 119 YYEALNALNQKITDYQDRQLKCTDPNQQYQLAQRIAFNQLRRDKCLNAIETLEEYL 174


>UniRef50_C6MB14 MscS Mechanosensitive ion channel n=1 Tax=Nitrosomonas sp. AL212
           RepID=C6MB14_9PROT
          Length = 1135

 Score = 42.4 bits (98), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 59/172 (34%), Gaps = 29/172 (16%)

Query: 13  QLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQV 72
           ++ATLR+R   +S            LF+ R                 L    EQ++L   
Sbjct: 166 EIATLRRRIEELSVSIVAQKDEPAALFEAR----------------RLHRLSEQRRLQMT 209

Query: 73  AWLAEHLAAQLEAIAR----EASAWSLR-EWDSAPPKIARWQRKRIQHQDFE-RRLREMV 126
             L   LA Q  A  R    E S   LR   D    +I   Q++      +E   L   +
Sbjct: 210 --LELRLAEQDTATQRQRLHELSLRELRYRLDLHEERIKHLQQRITSRGRYELESLIGQL 267

Query: 127 AERRARLAR-----VTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173
            +R   LA             +    E+     +LAR R AL +IE    R+
Sbjct: 268 IKREKELAGGNTVAAEAATVNRKTGEELLQQNEQLARDRAALARIEQARERI 319


>UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FAM0_9GAMM
          Length = 202

 Score = 41.6 bits (96), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 40/193 (20%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66
           L  L  Q+       A ++      A F   LF  +   +   + E   ++  L+H  ++
Sbjct: 21  LSALSKQVN--SNHTATINYKLRDRALFYPGLFINKNHDIHQYVAELEKSMIRLQHCFDK 78

Query: 67  Q-----------QLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIAR-------- 107
                        L     L E +A Q  AI         R  +                
Sbjct: 79  SFDKPSISSSNDTLSIEQVLLEKVAHQFRAINGVLQQCHFRRGEVKEEPKNYDVIAKKLL 138

Query: 108 -----WQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHA 162
                  +K  Q  D+ERRL+ ++               QQ    +++  + RL RC+ A
Sbjct: 139 QKSHYLYQKLAQQIDYERRLQAIID--------------QQREPLQLQQTKQRLQRCQVA 184

Query: 163 LEKIENRLARLTR 175
             K+  +L R  +
Sbjct: 185 TAKVRQQLQRYEQ 197


>UniRef50_A9V8I0 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V8I0_MONBE
          Length = 1781

 Score = 41.2 bits (95), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 23/173 (13%)

Query: 12   GQLATLRQRCAPVSQ--FATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL 69
             ++A LR+R A           A  DR     +  TLQ  L+   D +A L     QQQ 
Sbjct: 913  REVAELRERLASARAELQQHQGALVDR---DHKVKTLQEELERFKDQVANLESDRAQQQS 969

Query: 70   PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRI----QHQDFERRLR-- 123
                        +L+A   +     LR   S    I   Q +      ++ +   RL   
Sbjct: 970  Q---------LDKLQAATSDQHRDKLRRNSSMTTNINALQDQLASLNEENCELRARLESA 1020

Query: 124  -EMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
              +  ER+  +       + +T  RE    E  L +C++ L + E R+  L +
Sbjct: 1021 EALADERQRLVREAQRSRQDETAKREGLGLE--LDKCQNQLTRAERRIESLEQ 1071


>UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CM53_PASMU
          Length = 184

 Score = 40.5 bits (93), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK   L+  L  ++  L  +    +    L  RF  HLF            E    L  L
Sbjct: 1   MKKTELIRILTNKITQLDHKQRT-ATEQPLKTRFAPHLFSENNQVFSFYFQELKQTLTQL 59

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQ-------RKRI 113
            +A E   +   A+ AE L +Q  A++   +   ++     P   A           +  
Sbjct: 60  ENAPET-DIALCAFFAEKLLSQYVALSEALTHTQIKTETFTPTNKATHHVHQLPPRERLE 118

Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           ++ +  + L E +   +    +     E++ L ++++  + R A+C  A+E +E  L
Sbjct: 119 KYYEALQALNEKLMSLQDSQQKTQAEQEKKLLGQKIQLTQQRKAKCLVAIETLEEYL 175


>UniRef50_Q4Q0D8 Flagellum transition zone component, putative n=2 Tax=Leishmania
           RepID=Q4Q0D8_LEIMA
          Length = 1468

 Score = 39.7 bits (91), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62
               L   + ++A   Q     S  ATL A  D          L   L ++ ++ AALR 
Sbjct: 502 AQARLLDCDREVAAFHQVFDTQSSPATLRAIIDER------DHLVELLQQSHESEAALRD 555

Query: 63  AVEQQQLPQVAWLAEHL---AAQLEAIAREASAWSLREWDSAPPKIARWQRKR-IQHQDF 118
            V+  Q   V  + +      A+  A+AR+  A           ++A  +    +Q + +
Sbjct: 556 EVKAAQQQTVQAMEKRYQVQCAEQHAMARDREAQQEETIQKLRKRVAALEHVLEVQRETY 615

Query: 119 ERRLREMVAERRARLAR 135
           ER+L E   ER A+L  
Sbjct: 616 ERQLAEYAEEREAQLTE 632


>UniRef50_B7MRW2 Putative tail protein from prophage; putative tail length tape
           measure motif n=1 Tax=Escherichia coli ED1a
           RepID=B7MRW2_ECO81
          Length = 942

 Score = 39.3 bits (90), Expect = 0.055,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 46  LQACLDEAGDNLAALRHAVEQQQLPQVAW--LAEHLAA---QLEAIA---REASAWSLRE 97
           L   L E  D++ +L    E     Q  +      +AA   QL  +    RE +  S R+
Sbjct: 43  LSDSLRETQDSIRSLERQSEAFAAAQTKFDEATRKIAAVQQQLNRLQQAEREGTVLSERQ 102

Query: 98  WD---SAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQ-QTLHREVEAYE 153
            +   S   ++ R  R R  HQ   RRL +   E            +  Q   R    Y 
Sbjct: 103 REMMASLTTRLERLNRVRDVHQ---RRLEDSRRELERHGIAAEGSSQTIQAAIRRTAEYN 159

Query: 154 ARLARCRHALEKIENRLARLTR 175
             LAR R AL ++     R  +
Sbjct: 160 EALARQRQALAQVTRAQQRYEQ 181


>UniRef50_C3Y243 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3Y243_BRAFL
          Length = 1631

 Score = 38.5 bits (88), Expect = 0.100,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 40  QTRATTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD 99
           Q +   L+  + E  +    L          ++         QL+A+ R+A     +  +
Sbjct: 735 QCKLQQLEERIKEVREWKEQLLDQRRLAMDEKLERAERKRLLQLQAVVRKAQEEEAKANE 794

Query: 100 ----SAPPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEAR 155
               +      +      ++Q  E RL+E++  R+ +        E     R+    E R
Sbjct: 795 IAFINTLEAQNKRHDIMTRYQLVESRLQELLDMRQKKQEEKAAKEEAVQERRKALEAE-R 853

Query: 156 LARCRHALEKIENRLARLTR 175
            AR +  + K E + AR+ +
Sbjct: 854 QARVQELINKREEQEARIEQ 873


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis...   139   3e-32
UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Crono...   139   3e-32
UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Ent...   127   1e-28
UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q...   127   2e-28
UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsen...   125   6e-28
UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibri...   121   8e-27
UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio...   116   3e-25
UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibr...   116   3e-25
UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5...   115   5e-25
UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Prote...   114   9e-25
UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobac...   114   1e-24
UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=En...   113   3e-24
UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannhei...   102   6e-21
UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliiv...   101   1e-20
UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio...    96   5e-19
UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Panto...    94   3e-18
UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteur...    91   1e-17
UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=...    89   7e-17
UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alterom...    89   7e-17
UniRef50_B1KLR2 Primosomal replication protein N'', putative n=2...    88   1e-16
UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1...    87   2e-16
UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histoph...    86   3e-16
UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1...    83   4e-15
UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinob...    81   1e-14
UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomar...    77   2e-13
UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 ...    57   3e-07

Sequences not found previously or not previously below threshold:

UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteur...    70   4e-11
UniRef50_C9R5Z0 Primosomal replication protein N n=2 Tax=Aggrega...    59   7e-08
UniRef50_B0BNS4 Putative uncharacterized protein n=4 Tax=Actinob...    52   8e-06
UniRef50_P43987 Uncharacterized protein HI0326 n=17 Tax=Haemophi...    46   5e-04
UniRef50_A8IEQ2 Centriole proteome protein (Fragment) n=2 Tax=ce...    45   0.001
UniRef50_A7JWL4 Putative uncharacterized protein n=3 Tax=Mannhei...    45   0.001
UniRef50_B9CW03 Putative uncharacterized protein n=2 Tax=Actinob...    44   0.003
UniRef50_Q5QWS5 Primosomal replication protein C n=1 Tax=Idiomar...    42   0.007
UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritel...    41   0.017
UniRef50_A9USD4 Predicted protein n=1 Tax=Monosiga brevicollis R...    41   0.018
UniRef50_B8J072 Putative uncharacterized protein n=1 Tax=Desulfo...    41   0.020
UniRef50_B5JPV5 Methyltransferase domain family n=1 Tax=Verrucom...    40   0.021
UniRef50_Q2PDZ3 CG6664, isoform D n=17 Tax=Diptera RepID=Q2PDZ3_...    40   0.030

>UniRef50_Q2NV63 Primosomal replication protein N n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NV63_SODGM
          Length = 177

 Score =  139 bits (350), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/175 (33%), Positives = 86/175 (49%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M  + L+  L  +L  L  R           +RFD  LF  R   LQ  L E+   L+ L
Sbjct: 1   MHASQLITALGARLNELAARIDTQGHPLVQQSRFDPLLFSARGNRLQDYLSESRATLSHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AVEQ +  +VAWLA+ L  Q+ A++RE +  +LR    A         +  +HQD+ER
Sbjct: 61  TSAVEQGRTERVAWLAQRLTDQMLALSRELATQNLRHEHPASTPAEDVYARLAEHQDYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL  M+ +R +      DL   + L +E+ A E RL RCR AL ++E ++    R
Sbjct: 121 RLLAMICDRDSLRTAANDLARTRQLQQEIAALEGRLMRCRQALTRLEYQIECRER 175


>UniRef50_C9XXU0 Primosomal replication protein N'' n=2 Tax=Cronobacter
           RepID=C9XXU0_CROTZ
          Length = 171

 Score =  139 bits (350), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 4/175 (2%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M+T LLL+ L+ +LATLR+   P++     S RFDR LF      L   L EA ++LA L
Sbjct: 1   MRTPLLLQSLKTRLATLRELIEPLASQRHFSPRFDRQLFSCSGARLGDYLAEAEESLAHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             AV Q    +VAWLAE LAAQ+EA+ REA+  +LR  ++A     R   +  ++Q++ER
Sbjct: 61  EAAVTQGDAARVAWLAERLAAQIEALQREAATATLRRHENAHLPGGRLHARLAEYQEYER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL  M   R  R A   D      L RE++A   RLARCR A+ + E  L R+TR
Sbjct: 121 RLLAMKTGRERRCAENHDP----QLAREIDALNERLARCRTAIARTERALERITR 171


>UniRef50_P23862 Primosomal replication protein N'' n=104 Tax=Enterobacteriaceae
           RepID=PRIC_ECOLI
          Length = 175

 Score =  127 bits (319), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL
Sbjct: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER
Sbjct: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR
Sbjct: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175


>UniRef50_Q6CCK7 YALI0C08591p n=1 Tax=Yarrowia lipolytica RepID=Q6CCK7_YARLI
          Length = 736

 Score =  127 bits (319), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 3/163 (1%)

Query: 14  LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73
           + TL +         +      + L +  +  L +   E  +  + +   ++Q    +  
Sbjct: 484 VTTLLESLTTAQMTLSEEKSKTKKLRKDYSKRLASIRQEIENTKSKMESNLKQDSKSR-- 541

Query: 74  WLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA-ERRAR 132
              E L   L A+  E +       +            + + ++FE R +++   E+ A+
Sbjct: 542 HKIEQLQLSLPALEEELAMKQGEFEELNETVAGVSAAHKAKKKEFEERQQQLTKLEKEAQ 601

Query: 133 LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
             +     ++ +  +EV   + +L R +    K  N ++R+ R
Sbjct: 602 KLKKEADEKEASFQQEVVQLKTKLDRLQGRRAKAANDVSRVER 644


>UniRef50_D2TWE3 Primosomal replication protein N'' n=1 Tax=Arsenophonus nasoniae
           RepID=D2TWE3_9ENTR
          Length = 204

 Score =  125 bits (314), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 98/177 (55%), Gaps = 3/177 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LL  LE Q+  L ++  P++  A +++RFD+ LF  ++  L  CL E   +   L
Sbjct: 23  MKTQKLLNALEEQIEALSEQIKPIAHSAFITSRFDQKLFYRKSHQLSDCLFEIKQHFCQL 82

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP---PKIARWQRKRIQHQD 117
           ++AV   +L QV +L E + AQ+ AI RE++  +LRE ++      K      + +QHQD
Sbjct: 83  KNAVITSRLEQVTFLTEKIIAQIGAITRESATQTLREQENQHSQKEKTVDRYERLVQHQD 142

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           +ERRL  M+ +R  +L +    V  Q L +E+ A   RL RCR AL +IE  + R  
Sbjct: 143 YERRLIAMINDREQQLVKQQSYVACQKLQQEIAALTGRLVRCRQALSRIERAIERDE 199


>UniRef50_B7VM24 Primosomal replication protein N'' n=4 Tax=Vibrionales
           RepID=B7VM24_VIBSL
          Length = 196

 Score =  121 bits (304), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 7/171 (4%)

Query: 7   LEKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
             KL+  + TL   C+ V +       A FDR LF+  ++ L     E       +    
Sbjct: 18  FSKLKSVIDTLIGHCSQVDKSRGAYHQALFDRTLFKCSSSILLPYALETQATYNTIVREQ 77

Query: 65  EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLR--EWDSAPPKIARWQRKRIQHQDFER 120
              QL   +  +L E L  Q+ AI RE +   LR      +   +     +  QHQD+++
Sbjct: 78  ATNQLTASRANYLTEKLTNQIAAIQRELANHDLRLDRKSKSGKNLNDLYNELAQHQDWQK 137

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
           RL ++V  R+           ++      +  + RL RC  +++ IE  + 
Sbjct: 138 RLVDLVRVRKLAFDSA-PRHSKKKADEAWQLAKERLERCEDSMKNIERLIN 187


>UniRef50_B5FD93 Primosomal replication protein N' n=2 Tax=Vibrio fischeri
           RepID=B5FD93_VIBFM
          Length = 183

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 9/178 (5%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
              +E  L  L +  A + +         FD  LF  R+  L  C++EA   L +++   
Sbjct: 4   FTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREE 63

Query: 65  EQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117
           +   L   +  +L + L AQ+EAI RE +   +R  +  P       I+   +   QHQ+
Sbjct: 64  KANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQE 123

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           +ERRL +MV ++   + +     +QQ L +++ A E RL RC+ A+ ++E ++    +
Sbjct: 124 WERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQITYREQ 181


>UniRef50_A5F750 Primosomal replication protein N'' n=46 Tax=Vibrionaceae
           RepID=A5F750_VIBC3
          Length = 187

 Score =  116 bits (290), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 10/177 (5%)

Query: 8   EKLEGQLATLRQRCAPVSQFA--TLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVE 65
            K    L  L+   A + +         FD  LF      L  C++EA   L AL    E
Sbjct: 10  SKFHTILNELKHSAAQLDRQRGEHHRPLFDEVLFHCHGKLLTPCVEEAHSTLQALIREKE 69

Query: 66  QQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAP-----PKIARWQRKRIQHQDF 118
             +L   +  +L+E L AQ+ A+ RE S  ++R  +  P       I    ++  QHQD+
Sbjct: 70  SGRLTALRAEYLSERLLAQIAALTRELSTQNVRRNEPKPHAYFKKPINELYQELAQHQDW 129

Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           ERRL ++V ++   L + +   E+    + +   E RL RCR A  KIE R+    R
Sbjct: 130 ERRLMDLVRDKALLLEQASA-TEKAAAQQALLQSEQRLNRCREAKIKIEKRITTQER 185


>UniRef50_D0YZ22 Primosomal replication protein N prime prime n=5 Tax=Photobacterium
           RepID=D0YZ22_LISDA
          Length = 183

 Score =  115 bits (288), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 9/178 (5%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATL--SARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
           L + +  +A L+ + A + +         FD  LF+ R+  L  C++E    +  LR   
Sbjct: 4   LTRFDTLIAQLKTQAANLDRTRGEANKPLFDEQLFRCRSKLLTPCVNEIASEVFKLRQEQ 63

Query: 65  EQQQL--PQVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQD 117
           +  +L   +   + E + AQ++A+ RE +  S+R+ +          +    +   QH+D
Sbjct: 64  QSGRLLPTRTQHICEKIVAQIQAVQREFATISIRKNEPKYRSAHYQPLNEIYQNLNQHKD 123

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           +ER+L+  + ++   L++ +D   QQ L  EV   E R++RC+ AL KIE  + +  R
Sbjct: 124 WERQLKTKLRDKEFELSQCSDWQLQQKLQHEVLVLEGRVSRCQQALTKIEQTIMKRER 181


>UniRef50_B4EU75 Primosomal replication protein N'' n=4 Tax=Proteus
           RepID=B4EU75_PROMH
          Length = 180

 Score =  114 bits (286), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/177 (35%), Positives = 90/177 (50%), Gaps = 3/177 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK    L   + Q+  L +  AP++     +  FD  LF  R+ +L   + +  DN   L
Sbjct: 1   MKKTDPLSLFKKQIDNLAETLAPIANKKIAAPCFDTALFHHRSDSLGGYMQQIRDNFTQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWD---SAPPKIARWQRKRIQHQD 117
              VE Q+  QV +LA  +  Q+EA+ RE S  +LR+ +   S   K     +K  QHQD
Sbjct: 61  ITCVEAQRSQQVKFLATQILQQIEALTRELSTQTLRKQENQLSQRKKSVDLYQKLAQHQD 120

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           +ERRL+ M+ +R   L +    V QQ L +E+ A E RLARC+ AL  IE  + R  
Sbjct: 121 YERRLQSMIQDRELALTQAQGFVRQQELQKEIAALENRLARCKSALVSIEKSIERQE 177


>UniRef50_D1P4G4 Primosomal replication protein n=6 Tax=Enterobacteriaceae
           RepID=D1P4G4_9ENTR
          Length = 182

 Score =  114 bits (286), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 3/177 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MKT  LLE L+ Q+  L  R  P+       +RFD  LF  ++T L  C  E  +    L
Sbjct: 1   MKTQALLEALKKQIDELEARVTPIKDQEFSHSRFDMQLFSHKSTRLGDCQKELNNLYQQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSA---PPKIARWQRKRIQHQD 117
            H+V  +   QV +L E +  Q++AI+RE S  SLRE +S+     +      +  QHQD
Sbjct: 61  CHSVTLKHTQQVNFLTEKIVHQMQAISRELSTQSLREKESSFRAKKEQVDLYERLSQHQD 120

Query: 118 FERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           +ERRL+ MV+E+   L+ +TD   Q    +E+     RL RCR AL +IE  +    
Sbjct: 121 YERRLQSMVSEKELYLSGLTDHHLQHQCQKELAVLAGRLYRCRQALLRIEKAIEHQE 177


>UniRef50_D2BUL0 Primosomal replication priB and priC n=47 Tax=Enterobacteriaceae
           RepID=D2BUL0_DICD5
          Length = 183

 Score =  113 bits (282), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 94/181 (51%), Gaps = 6/181 (3%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M T  LL  L  Q+ TL Q   P++      +RFDR LF    T L   LDE   N   L
Sbjct: 1   MDTQALLAVLTRQIDTLAQAVEPIAARQAPRSRFDRQLFSCYGTRLGDYLDEIRLNYQHL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           +  V++Q+  +VA++AE L  Q+ A+ RE +   LRE +   P      +K  ++Q +ER
Sbjct: 61  QQYVQEQRQDRVAFMAEKLLTQMTALQRELATQPLREHEPTTPAPQDRYQKLAEYQGYER 120

Query: 121 RLREMVAERRAR------LARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           RL  M+ +R +       L+    L EQQ L RE+ A E RL RCR AL K+E ++ R  
Sbjct: 121 RLLAMIQDRESLLATQSTLSEQHMLNEQQRLQRELAALEGRLTRCRQALSKLERQIERQE 180

Query: 175 R 175
           +
Sbjct: 181 Q 181


>UniRef50_Q65UQ3 Putative uncharacterized protein n=1 Tax=Mannheimia
           succiniciproducens MBEL55E RepID=Q65UQ3_MANSM
          Length = 186

 Score =  102 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 78/183 (42%), Gaps = 14/183 (7%)

Query: 4   ALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHA 63
             L+E+L+ ++  L  + A  S      A+FDR LF     + Q   D+    LA +   
Sbjct: 5   TALIEQLQAKVQQLTLQFAAFSDKKIY-AKFDRTLFSEDFESGQFYFDQIQHTLAQI-AG 62

Query: 64  VEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------------QRK 111
           +++ ++PQ+ + +E L AQ  A++   +  + R+    P   ++             + +
Sbjct: 63  LKETEIPQIQFFSEKLLAQCTALSDAINQNNGRKTAPTPKIPSQREKIKHELNQLPPRER 122

Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
            +++ +  + L E + E   +     +  ++     +++    R  RC  A+E +E  L+
Sbjct: 123 LVRYYEALQALNEKINELEDKRDTAHNEQQKAGYQHQIDITLPRRKRCLEAIEVLEEYLS 182

Query: 172 RLT 174
              
Sbjct: 183 FKE 185


>UniRef50_B6EJ81 Primosomal replication protein N'' n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EJ81_ALISL
          Length = 186

 Score =  101 bits (251), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 10  LEGQLATLRQRCAPVSQFATLS--ARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67
           +E  L  L +  A + +         FD  LF  R+  L  C++E    L +++   +  
Sbjct: 8   IEIMLEQLAKTSAEIDRRRGEQRLPLFDERLFGCRSRYLIPCINETKATLQSIQREEKAN 67

Query: 68  QLP--QVAWLAEHLAAQLEAIAREASAWSLREWDSAPP-----KIARWQRKRIQHQDFER 120
            L   +  +L + L AQ+EAI RE +   +R  +  P       I+   +   QHQ++ R
Sbjct: 68  MLTPQRAEYLTQMLLAQIEAIQREIATQRIRSHEVRPKGSNKKPISDMYQDLAQHQEWSR 127

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           RL +MV E+   + +     +QQ L + +   E RL RC+ A+ ++E ++    +
Sbjct: 128 RLIQMVQEQEQNVNKCHSFSQQQELQKVLLTTEKRLQRCKTAMIRLEQQITYREQ 182


>UniRef50_A6D7K7 Primosomal replication protein N' n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7K7_9VIBR
          Length = 171

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 7   LEKLEGQLATLRQRCAPVS--QFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
           L +++ +L  L Q                FD HLF      LQ C+ EA  NL  +    
Sbjct: 3   LSEVKARLKQLHQDAQEFDFRNRGHKKPLFDEHLFSASNLLLQPCVIEAERNLDKIITLS 62

Query: 65  EQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDS-APPKIARWQRKRIQHQDFERRL 122
           +Q      + +       QLEAI R     +     +     + + +    QHQ +E++L
Sbjct: 63  KQGISGSSSEIWVTKFTEQLEAIERVLLIANTHTDTALECKSLEQLRADLKQHQVWEQKL 122

Query: 123 REMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
             +V ++   L      ++ QT   ++ + E RL RCR+A+  I++ + +  R
Sbjct: 123 CTLVRQQEQCL------IDDQTTKPQLISTEQRLQRCRNAMNAIQHTINQKMR 169


>UniRef50_C8Q3V5 Primosomal replication protein N'' n=1 Tax=Pantoea sp. At-9b
           RepID=C8Q3V5_9ENTR
          Length = 170

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 3/173 (1%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M      ++L+  L  LRQ+ A     +    RFD  LF  + T L   L E   N+A L
Sbjct: 1   MPLPRPQQRLQLTLQLLRQQIAQQPDGSCRQPRFDAQLFHCKGTRLADYLQELEHNVAQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
             A   Q + +  WLA+ +  Q+ A+ RE  +  LR     P    + Q+KR +++ +E 
Sbjct: 61  TAA--DQDVTRRQWLADKVVDQIAALQRECQSQQLRVARERPRTDGK-QQKREEYRGYEI 117

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173
           RL  M+AER   L R   L  QQ L RE+E    RL RCR A+ K+E +    
Sbjct: 118 RLLGMIAEREQHLQRAETLSIQQQLIRELEQLHLRLGRCRQAIHKLELQFTAR 170


>UniRef50_C9PN53 Putative uncharacterized protein n=1 Tax=Pasteurella dagmatis ATCC
           43325 RepID=C9PN53_9PAST
          Length = 184

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M    L+ +L  ++  L Q+          + + + HLF     T     +E    L  L
Sbjct: 1   MTKTELIAQLSQKVDQLYQQVGAKKDQRL-TYKLEAHLFSEHYQTYTFYFNEIKQTLTQL 59

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARW------QRKRIQ 114
              +++Q L    +L E   +Q  AI+        ++  +  P+  +       + +  +
Sbjct: 60  DK-IDEQDLELCRFLVEKFLSQCTAISDSLLLKKNQQTTTFTPQNKQDIHRLPPRERLAK 118

Query: 115 HQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           + +    L + + + + R  + TD  +Q  L + +   + R  +C +A+E +E  L
Sbjct: 119 YYEALNALNQKITDYQDRQLKCTDPNQQYQLAQRIAFNQLRRDKCLNAIETLEEYL 174


>UniRef50_A1SWQ6 Restart primosome assembly protein PriC n=2 Tax=Psychromonas
           RepID=A1SWQ6_PSYIN
          Length = 188

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFATLSAR----FDRHLFQTRATTLQACLDEAGDNLA 58
             L +++L  QL  L +RC  + +  + +      F+ H+F  R  TL   + +      
Sbjct: 7   KNLPIDQLNRQLKVLSKRCEVLDESVSQTENKCFVFEVHIFPKRCLTLLGYIKQIEHTAK 66

Query: 59  ALRHAVEQQQLPQ-VAWLAEHLAAQLEAIAR-----EASAWSLREWDSAPPKIARWQRKR 112
           +L++A+++      +A+       Q + + +     E     +     +  K   +Q+ +
Sbjct: 67  SLQNALDKNLPEALIAFECTLFIDQFQVLLQLVQSLEKGEADILYKSYSSIKENIYQQLQ 126

Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
            Q+  +E RL  M+AE+   +   ++  ++  +  ++E  + R  +C    + +E +  
Sbjct: 127 KQYH-YEERLLNMIAEQEELMTH-SNAQQKIDIKEKIEVLKGRYQKCNSYTQMLEFKFQ 183


>UniRef50_Q3IIU3 Putative uncharacterized protein n=3 Tax=Alteromonadales
           RepID=Q3IIU3_PSEHT
          Length = 202

 Score = 89.0 bits (219), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 32/200 (16%)

Query: 4   ALLLEKLEGQLATLRQRCAPVSQFATLSAR---------FDRHLFQTRATTLQACLDEAG 54
           +   +KL  Q+ATL+Q+     +    S           FDR +F T++  L   + E  
Sbjct: 3   SPAFDKLRQQVATLKQQAEQFDKAKLFSKNRYMQAQPSLFDRAVFSTKSMNLADYVAEIE 62

Query: 55  DNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP------------ 102
           D +++L  +  +       +  E +A Q++A+     +  +   ++              
Sbjct: 63  DEVSSLPPSEHRH---AYTYALERIATQVQAVFNVIKSTPIWIKENKSHYKPRPKQAVYK 119

Query: 103 -------PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEAR 155
                          +  Q+ +FERRL  M+ ER+ ++ + T   + Q L+ E+    AR
Sbjct: 120 QAVQQVIQSSHELYDELKQNHEFERRLLLMIEERKMQMDKATP-AKAQKLNLEILTTHAR 178

Query: 156 LARCRHALEKIENRLARLTR 175
           L RCR A+   E ++ R+ +
Sbjct: 179 LGRCRKAISATEEKIQRVEK 198


>UniRef50_B1KLR2 Primosomal replication protein N'', putative n=21 Tax=Shewanella
           RepID=B1KLR2_SHEWM
          Length = 224

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 40/214 (18%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATL--------SARFDRHLFQTRATTLQACLDE 52
           M T+ LL++L  Q   L Q                   + RF+  LF      L+ C+D+
Sbjct: 1   MTTSELLKRLRAQHKQLEQEVLQHDAKLPKGQRRLLQDTERFNDSLFIQTGAELKPCIDQ 60

Query: 53  AGDNLAALRHAVEQQQLPQVAWL-AEHLAAQLEAIAREASAWSLREWDSAPPKIA----- 106
              ++  L   ++ +       L  E +  +  A+ R  +  SL    +   K       
Sbjct: 61  ISKSIEQLEKLIKGKISANTILLSCERIQDRFTAVKRALATTSLDVKSAEHQKQMRIAKA 120

Query: 107 -------------------------RWQRKRIQHQDFERRLREMVAERRARLARVTDLVE 141
                                    +   +  +H ++ +   + +   ++ L       +
Sbjct: 121 QQRRRKSHSNSGFDWIAAGVMQNSHQLYEELNKHLNWVKAFEQKIQNLQSELEYCHSADK 180

Query: 142 QQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
            +    E+     RL +CR A+  IE R+    R
Sbjct: 181 IKK-QNEILLVHRRLGKCRQAISYIEERIQAFER 213


>UniRef50_C9P3U8 Primosomal replication protein N prime prime n=1 Tax=Vibrio
           metschnikovii CIP 69.14 RepID=C9P3U8_VIBME
          Length = 210

 Score = 87.5 bits (215), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 15/182 (8%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSAR--FDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
                 +L  L +    +        R  FD  LF+    +L++C  EA   L+ L H  
Sbjct: 25  FGSATKRLQRLMRHAELIDTQYRHHTRRWFDNQLFKKNVFSLKSCAHEAEQTLSQLHHIC 84

Query: 65  EQQQ--LPQVAWLAEHLAAQLEAIAREASAWSLREWD----------SAPPKIARWQRKR 112
                 L QV  L++ L AQLEA+ R    W                +     ++   + 
Sbjct: 85  HASSPCLVQVKHLSDRLCAQLEALQRVVDEWENSLQRDGLDSEHPTLAKDMSESQLAEQL 144

Query: 113 IQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLAR 172
           IQHQ +E+RL  +V  R+ +L + +     Q   + +   + RL RC+ A   IE +L  
Sbjct: 145 IQHQRWEQRLLTLVLNRQYQLEQTSARYYPQA-QQALFLAKQRLNRCQQAKAIIEAQLIN 203

Query: 173 LT 174
           L 
Sbjct: 204 LQ 205


>UniRef50_Q0I4D2 Putative uncharacterized protein n=2 Tax=Histophilus somni
           RepID=Q0I4D2_HAES1
          Length = 197

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           M+ + ++  L+ ++     R + +     + A+FDR LF     +L   L E    L  L
Sbjct: 1   MQQSPVIILLKQKVDEFFSRYSHIPSKQKIYAKFDRTLFSQDFESLSFYLKEIRQCLTQL 60

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSL-------------------REWDSA 101
               +   + +  + +E L  Q  A++   S  +                    RE    
Sbjct: 61  EKINDDN-VQKYTFYSEKLKGQCNALSEALSQTNAKTNIKFQHNDTSLQSVQERREKQRI 119

Query: 102 PPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161
                  + +  ++ +  + L   +  +R      T L ++QT  +++   + R  RC  
Sbjct: 120 ALNKLPPRERLSKYYEALQTLNTKLERQRDCFEEATLLQDKQTYSQQIAITQQRKQRCSE 179

Query: 162 ALEKIENRLARLT 174
           A+E++E  LA L 
Sbjct: 180 AIEQLEEYLALLD 192


>UniRef50_C9NYK0 Primosomal replication protein N prime prime n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NYK0_9VIBR
          Length = 182

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 10/180 (5%)

Query: 5   LLLEKLEGQLATLRQRCAPVSQFAT--LSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62
               +L   L  L Q    +         A FD+ LF+ ++  L     EA + L  +  
Sbjct: 2   KQFGQLSSLLEQLEQEATLLDNQRGEQQQALFDQKLFRCQSKLLTPYTYEAHETLDKILC 61

Query: 63  AVEQQQLP--QVAWLAEHLAAQLEAIAREASAWSLREWDS-----APPKIARWQRKRIQH 115
                 L   Q  +L+E L  Q+ AI RE +  +LR+ +      +   +    +   QH
Sbjct: 62  EQSSGSLSPDQAEFLSEKLLWQISAIKRELATTALRQSEPTGKSFSQRNLNELYQSLAQH 121

Query: 116 QDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLTR 175
           Q +E+RL+ +V  +       T   +       +++ + RL RC+ A  KIE +++   R
Sbjct: 122 QQWEQRLKTLVKNKEQEHKLATPRDKSLAAQ-TLQSAQRRLQRCQQAKIKIEKQISYKER 180


>UniRef50_A6VQB5 Putative uncharacterized protein n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VQB5_ACTSZ
          Length = 193

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62
              LL +L+  +  L+++  PV +   L  +FD  +F      L+  L+E    +  +  
Sbjct: 4   QTALLNRLQRLITQLQKQYEPV-KRQILHTKFDPAIFSENFQPLEFYLNEIRHCIEQISQ 62

Query: 63  AVEQQQLPQVAWLAEHLAAQLEAIAREA---------------SAWSLREWDSAPPKIAR 107
            +  +++ Q A+ +E L+AQ  A+                      SLRE      +   
Sbjct: 63  -LSPEEVAQTAFFSEKLSAQYTALTDALQFIEKPKAKSAVNFKPVLSLREKRRQQLEQLP 121

Query: 108 WQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIE 167
            + + I++ +  + L E +  ++    +     E+  + ++++    R  RC  A+E +E
Sbjct: 122 PRARLIKYYEALQALNEKLNGQKDLQKQCLSEKEKMRIQQQIDITRQRRQRCLDAIEVLE 181

Query: 168 NRLARLT 174
             LA   
Sbjct: 182 EYLAFKE 188


>UniRef50_A3WNT0 Primosomal replication protein C n=1 Tax=Idiomarina baltica OS145
           RepID=A3WNT0_9GAMM
          Length = 170

 Score = 77.1 bits (188), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQF----ATLSARFDRHLFQTRATTLQACLDEAGDNLA 58
           T   L++    LA LR++     Q           F  +LF TR+    A ++E    + 
Sbjct: 2   TPTYLQQFSRALAVLREKAQVFDQQKANKRFAEQWFAENLFTTRSQFAVAYVNETEQLIN 61

Query: 59  ALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDF 118
            L   +      +  +LAE ++ Q+ +++      +L +    P      + +       
Sbjct: 62  KL---ITSDDNERKQYLAEKISEQVLSLS------ALLQNSRPPDADFDLRAQLQAQHGQ 112

Query: 119 ERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
             +      +   RL    +L +Q     + +AY+ RL RC+ A+ ++E ++ 
Sbjct: 113 LHQTLAKYRQYEIRLRNKAELFQQSGDLVQAQAYQKRLNRCQQAISQVERQIQ 165


>UniRef50_Q9CM53 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
           RepID=Q9CM53_PASMU
          Length = 184

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 9/177 (5%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           MK   L+  L  ++  L  +    +    L  RF  HLF            E    L  L
Sbjct: 1   MKKTELIRILTNKITQLDHK-QRTATEQPLKTRFAPHLFSENNQVFSFYFQELKQTLTQL 59

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPK-------IARWQRKRI 113
            +A E   +   A+ AE L +Q  A++   +   ++     P             + +  
Sbjct: 60  ENAPET-DIALCAFFAEKLLSQYVALSEALTHTQIKTETFTPTNKATHHVHQLPPRERLE 118

Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
           ++ +  + L E +   +    +     E++ L ++++  + R A+C  A+E +E  L
Sbjct: 119 KYYEALQALNEKLMSLQDSQQKTQAEQEKKLLGQKIQLTQQRKAKCLVAIETLEEYL 175


>UniRef50_C9R5Z0 Primosomal replication protein N n=2 Tax=Aggregatibacter
           RepID=C9R5Z0_AGGAD
          Length = 188

 Score = 59.0 bits (141), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 66/184 (35%), Gaps = 18/184 (9%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66
           +++L+  L     R     +  T+ A+F  +LF      +     +     A L  A + 
Sbjct: 6   IQRLKQSLQHFFARYDA-QKEGTVYAKFSANLFTENRQKVAFYFQQIEQTFARLEQA-DP 63

Query: 67  QQLPQVAWLAEHLAAQLEAIAREASAWSL------REWDSAPPKIARWQ---------RK 111
             L  + +  + L+AQ  A++   +          R+    P    + +          +
Sbjct: 64  SNLEALQFYTQKLSAQCTALSDALTRQQQNDQPFPRKTKEEPKPTGKRRHPVHSLPPRER 123

Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
             ++ D+     E +   +  L +      +    + +E  E R ARC  A++ +E  L 
Sbjct: 124 LAKYYDYLASFNEKIQVEQDTLEKAQ-REGRLVNKQMLEQLEQRRARCLEAIDVLEEYLV 182

Query: 172 RLTR 175
            + +
Sbjct: 183 FVEK 186


>UniRef50_Q47XP5 Putative primosomal replication protein N'' n=1 Tax=Colwellia
           psychrerythraea 34H RepID=Q47XP5_COLP3
          Length = 227

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 44  TTLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP- 102
           ++LQ    +    + A++      Q  Q ++ A        A A +     +    +   
Sbjct: 91  SSLQRIEQQISALMNAIQSNQTMHQAAQASFDARKNVRVKAAKAAQLKQNDVYNKMAKSV 150

Query: 103 -PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRH 161
                +  ++  +H +FERRLR+M+ ER  +  R       + L +EV A   RL RCR 
Sbjct: 151 LLTSHQLYQQLSEHHEFERRLRDMITEREQQRIRSKSAN-TEKLSQEVLALHQRLGRCRK 209

Query: 162 ALEKIENRLARLTR 175
           A+  IE  + +  +
Sbjct: 210 AISSIERSIEQAEK 223


>UniRef50_B0BNS4 Putative uncharacterized protein n=4 Tax=Actinobacillus
           pleuropneumoniae RepID=B0BNS4_ACTPJ
          Length = 177

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 7   LEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQ 66
           L      L  ++Q+    S F         +LF      +   + E       L     +
Sbjct: 3   LTMFSDFLQVIQQKLTVFSPFLEQEVIVKGNLFSQNQKKVSDFIQEIIHTAQLLSQQTTE 62

Query: 67  QQLPQVAWLAEHLAAQLEAI-------------AREASAWSLREWDSAPPKIARWQRKRI 113
                  + A  L  Q +A+             ARE    S               R+  
Sbjct: 63  DYAD---FYATKLLRQFDALNHAVFMLEKADLSAREVFTTSFSF--PKNIHALPPARRLN 117

Query: 114 QHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARL 173
           +++   R L E ++    +    T+  E+ T   ++E  E R  +C+ A+E++E +L+++
Sbjct: 118 EYRKALRALNEKISWLLEKSYAATNDAEKNTWQLQIEETEYRKMKCQKAIEELEEKLSKI 177


>UniRef50_P43987 Uncharacterized protein HI0326 n=17 Tax=Haemophilus influenzae
          RepID=Y326_HAEIN
          Length = 87

 Score = 45.9 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 1  MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
          M    L+++L+ ++  L Q      +     A+FDR LF      +   L E    L  +
Sbjct: 1  MTVQQLIQRLDQKVQQLYQAHLSKREEKIF-AKFDRTLFSENGQNVSFYLKEINQTLDRI 59

Query: 61 RHAVEQQQLPQVAWLAEHLAAQLE 84
             +E        +LAE L A + 
Sbjct: 60 -KTLESNDSNHYNFLAERLLANVP 82


>UniRef50_A8IEQ2 Centriole proteome protein (Fragment) n=2 Tax=cellular organisms
            RepID=A8IEQ2_CHLRE
          Length = 3124

 Score = 45.1 bits (105), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 12/161 (7%)

Query: 8    EKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67
              L   +  L      +          D    Q +    +    +            ++ 
Sbjct: 1765 SSLRRLVDQLHSDVVQLQDEQQRQK--DEQQRQKQEVWAKMQQLQDEQQRQKDEQQRQKD 1822

Query: 68   QLPQVAWLAEHLAAQLEAIAR------EASAWSLREWDSAPPKIARWQRK--RIQHQDFE 119
            +L +    AE    QLE   +      EA    L +         + Q+   + Q Q+ E
Sbjct: 1823 ELQRQKQEAEAKMQQLEDEQQRQKQEAEAKMQQLEDEQQRQKDEQQRQKDELQRQKQEAE 1882

Query: 120  RRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR 160
             +++++  E   +  +     ++  L R+ +  EA++ + R
Sbjct: 1883 AKMQQL--EDEQQRQKDEQQRQKDELQRQKQEAEAKMQKFR 1921


>UniRef50_A7JWL4 Putative uncharacterized protein n=3 Tax=Mannheimia haemolytica
           RepID=A7JWL4_PASHA
          Length = 172

 Score = 44.7 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 12/166 (7%)

Query: 14  LATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLPQVA 73
           +A ++Q  + ++ F+T +   +   F  +   +   + E    +  L   + Q ++    
Sbjct: 7   IAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIAEIEKTVELL---LNQTEVLYSE 63

Query: 74  WLAEHLAAQLEAIAREAS-------AWSLREWDSAPPKIARWQ--RKRIQHQDFERRLRE 124
           + AE L  Q++A+            +          P I R    ++  +++   R L E
Sbjct: 64  FYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNIHRLAPNKRLQEYRKALRALNE 123

Query: 125 MVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRL 170
            ++    +     +   +QTL  ++   E R  +C  A+E +E  L
Sbjct: 124 KISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLKAIEDLEQEL 169


>UniRef50_B9CW03 Putative uncharacterized protein n=2 Tax=Actinobacillus minor
           RepID=B9CW03_9PAST
          Length = 172

 Score = 43.6 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 16/169 (9%)

Query: 10  LEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQL 69
              ++  L ++  P     T  A      F      +   ++E   ++  L+    Q   
Sbjct: 4   FSQKIERLLKKFEPF---LTRQAVVSGEYFTKDKALVSQFVEEIKQSVRLLQQ---QDSP 57

Query: 70  PQVAWLAEHLAAQLEAIAREASAWSLREWD----------SAPPKIARWQRKRIQHQDFE 119
                 AE L  Q +A+ +  +  S  +                     +++ I+++   
Sbjct: 58  EYAEVYAEKLLRQFDALNKAVALLSKEKQRESAFRSAYHFPKNVHSLSPEKRLIEYRKAL 117

Query: 120 RRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIEN 168
           R L + ++    +    +   E Q L  +++  E R  RC  A+E++E 
Sbjct: 118 RALNDKISWLVEKQLSASHHDEYQQLKYQIDETEYRKMRCLAAIEELEE 166


>UniRef50_Q5QWS5 Primosomal replication protein C n=1 Tax=Idiomarina loihiensis
           RepID=Q5QWS5_IDILO
          Length = 176

 Score = 42.4 bits (98), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 15/174 (8%)

Query: 7   LEKLEGQLATLRQRCAPVS------QFATLSARFDRHLFQTRATTLQACLDEAGDNLAAL 60
           ++ +E  L TL+ R   +               F   LF   +      + E  +    L
Sbjct: 10  IQHIEQLLNTLQGRAEQIDGENRKKHRQLSENWFSSSLFSQSSNLAVDYVAETQNLFRQL 69

Query: 61  RHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFER 120
           +   +        +LAE L+ QLEA+            +  P +    +           
Sbjct: 70  Q---KSDNHHAQRYLAEKLSLQLEALNTAF------RANRPPKQQQDHRITAQNQLQQMH 120

Query: 121 RLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           +      +   RL    D          +++ + RL RC+ A++ +E +++R  
Sbjct: 121 QQLVTYRDYERRLTENLDTAAAGNNPTMIQSAQQRLNRCQMAIDSLEKKISRYE 174


>UniRef50_A6FAM0 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FAM0_9GAMM
          Length = 202

 Score = 40.9 bits (94), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 5   LLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAV 64
             L  L  Q+       A ++      A F   LF  +   +   + E   ++  L+H  
Sbjct: 19  QQLSALSKQVN--SNHTATINYKLRDRALFYPGLFINKNHDIHQYVAELEKSMIRLQHCF 76

Query: 65  EQ-----------QQLPQVAWLAEHLAAQLEAIAREASAWSLREWD--SAPPKIARWQRK 111
           ++             L     L E +A Q  AI         R  +    P       +K
Sbjct: 77  DKSFDKPSISSSNDTLSIEQVLLEKVAHQFRAINGVLQQCHFRRGEVKEEPKNYDVIAKK 136

Query: 112 RIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLA 171
            +Q   +   L + +A++     R+  +++QQ    +++  + RL RC+ A  K+  +L 
Sbjct: 137 LLQKSHY---LYQKLAQQIDYERRLQAIIDQQREPLQLQQTKQRLQRCQVATAKVRQQLQ 193

Query: 172 RLTR 175
           R  +
Sbjct: 194 RYEQ 197


>UniRef50_A9USD4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USD4_MONBE
          Length = 1411

 Score = 40.9 bits (94), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 3   TALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRH 62
              L+  L  +   LR R   +       A     L     T L +   EA   +  L  
Sbjct: 480 QQDLIAALTTECEELRTRLEELDATNAARADEIAQL--AAGTQLSS---EAEALIEQLEA 534

Query: 63  AVEQQQLPQVAWLAE--HLAAQLEAIAR---------EASAWSLREWDSAPPKIAR-WQR 110
            +++ ++ Q + LA+   L  Q+E + +         E   W LR       +  R  Q+
Sbjct: 535 QLDEHRVEQQSLLAKIHELQLQVEELKQLHSSPEAAFERMQWQLRRTQKVDRQEIRTLQQ 594

Query: 111 KR-IQHQ---DFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLAR 158
               Q+Q   D E+R++ + A+  A  A +T+   +  L + +++      R
Sbjct: 595 DLAAQNQAKVDAEQRVQVLSAQVAALQADMTERDREGQLAQLLQSASGEKER 646


>UniRef50_B8J072 Putative uncharacterized protein n=1 Tax=Desulfovibrio desulfuricans
            subsp. desulfuricans str. ATCC 27774 RepID=B8J072_DESDA
          Length = 1354

 Score = 40.9 bits (94), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 3/151 (1%)

Query: 11   EGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQQLP 70
              +LA  ++  A   +        D  +   R     A   +A D L       EQ++L 
Sbjct: 1034 TRRLAMEQELAALDDEVRAAQVALDTAVHAERGLLALAGAQDAEDFLRQAAAHEEQRKLA 1093

Query: 71   QVAWLAE---HLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA 127
            Q     E    LAA    +      +     ++   + A    +  Q Q+ E+ L + V+
Sbjct: 1094 QRRLDLEDALRLAADKCPLEDFLQQFENENRETQENRCAEITAELAQLQEKEQELADRVS 1153

Query: 128  ERRARLARVTDLVEQQTLHREVEAYEARLAR 158
              RAR+  ++   E   L ++    E  + R
Sbjct: 1154 SLRARVETLSHDDELARLQQQAATLEESMQR 1184


>UniRef50_B5JPV5 Methyltransferase domain family n=1 Tax=Verrucomicrobiae bacterium
           DG1235 RepID=B5JPV5_9BACT
          Length = 476

 Score = 40.5 bits (93), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 76/209 (36%), Gaps = 38/209 (18%)

Query: 1   MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEA------- 53
           +     + +L+ Q+ TL++      +  +  A F++HL Q  + +L++ L+E        
Sbjct: 250 LPAKRQISELKSQIDTLKESSL---KRKSEVANFEKHL-QQNSNSLKSGLEEIIKRSERA 305

Query: 54  GDNLAALRHAVEQQQLPQVAWLAEH--LAAQLEAIAREASAWSLREWDSAPPKIARWQRK 111
            +   +L+  +E+Q+    ++  E+  L  Q  ++  +     L+            +  
Sbjct: 306 EEQFNSLQTDIEKQRSCLESYREENANLTNQNTSLQSDLREKGLKIETLEEECDRVREEL 365

Query: 112 RIQHQDFERR------LREMVAERRAR------------------LARVTDLVEQQTLHR 147
           +   +  E++      L +++     +                    +   L ++  L  
Sbjct: 366 KASQKSLEQKNKENDSLLKVIDNIEDQNAEAQVILSTKLKLIAELENKQHSLFKESELKE 425

Query: 148 -EVEAYEARLARCRHALEKIENRLARLTR 175
            E++    RL +C    + +  R   L +
Sbjct: 426 KELDDLHTRLNQCSDERDNLSERYQHLKQ 454


>UniRef50_Q2PDZ3 CG6664, isoform D n=17 Tax=Diptera RepID=Q2PDZ3_DROME
          Length = 571

 Score = 40.1 bits (92), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 13/167 (7%)

Query: 8   EKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACLDEAGDNLAALRHAVEQQ 67
           E+L+ ++ +L Q+   +              F+T+       + E    L      ++ +
Sbjct: 64  EQLQKRIESLTQQNKVLKAELDT--------FKTKCKV----VQEENRCLKQASVIIQAK 111

Query: 68  QLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAPPKIARWQRKRIQHQDFERRLREMVA 127
              +  +++  L  +++A+ +E    +               RK  Q    E+   E   
Sbjct: 112 AEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTNDLSRKLDQ-LRQEKCKLEQTL 170

Query: 128 ERRARLARVTDLVEQQTLHREVEAYEARLARCRHALEKIENRLARLT 174
           E+         + + + L  E +  +  L + R  + ++EN L +  
Sbjct: 171 EQEQECLVNKLMRKIEKLQAETDNKQTNLEQLRREMVELENTLEQEQ 217


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.303    0.130    0.311 

Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 785,041,102
Number of Sequences: 3077464
Number of extensions: 24801056
Number of successful extensions: 523121
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 4448
Number of HSP's that attempted gapping in prelim test: 407379
Number of HSP's gapped (non-prelim): 61981
length of query: 175
length of database: 1,040,396,356
effective HSP length: 120
effective length of query: 55
effective length of database: 671,100,676
effective search space: 36910537180
effective search space used: 36910537180
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 88 (38.5 bits)
