18/01/2012 10:34:47 : INFO  : Run start: Wed Jan 18 10:34:47 GMT 2012
18/01/2012 10:34:47 : INFO  : Initialised job
18/01/2012 10:34:47 : INFO  : Renaming log file 'phyre2_20120118_103447.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7920c6d1405d4853/phyre_20120118_103447.log'
18/01/2012 10:34:47 : INFO  : Initialised job:
Sequence
>batch____
MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPYDANDTLSQAVAKSFYQ
GLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDPA
NHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIGF
YPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSITWRPVADNNTRAAMLQTGEAQF
AFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPALVK
VAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKARELLKEAGYPNGFSTTLWSSHNHSTA
QKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGEADWAL
SPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRLYKAAQDIIWQESPWIPL
VVEKLVSAHSKNLTGFWIMPDTGFSFEDADLQ

18/01/2012 10:34:47 : INFO  : Checked sequence
18/01/2012 10:34:47 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 10:34:47 : INFO  : PSI-BLAST 3 iterations
18/01/2012 10:38:08 : INFO  : PSI-BLAST 5 iterations
18/01/2012 10:42:59 : INFO  : Finished PSI-BLAST
18/01/2012 10:42:59 : INFO  : Running Buildali to generate a3m file
18/01/2012 11:40:05 : INFO  : Converting to HMM
18/01/2012 11:40:17 : INFO  : Calibrating HMM
18/01/2012 11:40:29 : INFO  : Searching HMM database
18/01/2012 11:49:54 : INFO  : Finished buildali
18/01/2012 11:49:54 : INFO  : Predicting secondary structure
18/01/2012 11:49:54 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 11:49:54 : INFO  : Predicting Disordered regions
18/01/2012 11:49:54 : INFO  : Predicted Disorder (Disopred)
18/01/2012 11:49:54 : INFO  : Running memsat_svm check
18/01/2012 11:52:07 : INFO  : Globular protein
18/01/2012 11:52:07 : INFO  : Predicted Transmembrane (memsat_svm) ID '7920c6d1405d4853'
18/01/2012 11:52:07 : INFO  : Initialising fold library search
18/01/2012 11:52:07 : INFO  : Initialised search input
18/01/2012 11:52:07 : INFO  : Building Ensemble models
18/01/2012 11:52:07 : INFO  : Building hh.d1uqwa_.model.1.pdb
18/01/2012 11:52:08 : INFO  : Building d1uqwa_.1.pdb
18/01/2012 11:52:08 : INFO  : Building d1dpea_.2.pdb
18/01/2012 11:52:08 : INFO  : Building c3tpaA_.3.pdb
18/01/2012 11:52:09 : INFO  : Building c3m8uA_.4.pdb
18/01/2012 11:52:10 : INFO  : Building c3o9pA_.5.pdb
18/01/2012 11:52:10 : INFO  : Building c2wokA_.6.pdb
18/01/2012 11:52:11 : INFO  : Building d1jeta_.7.pdb
18/01/2012 11:52:11 : INFO  : Building d1zlqa1.8.pdb
18/01/2012 11:52:12 : INFO  : Building d1xoca1.9.pdb
18/01/2012 11:52:12 : INFO  : Building c3t66A_.10.pdb
18/01/2012 11:52:13 : INFO  : Building c3rqtA_.11.pdb
18/01/2012 11:52:13 : INFO  : Building c1ztyA_.12.pdb
18/01/2012 11:52:13 : INFO  : Building c2o7jA_.13.pdb
18/01/2012 11:52:14 : INFO  : Building c2grvC_.14.pdb
18/01/2012 11:52:15 : INFO  : Building c3ftoA_.15.pdb
18/01/2012 11:52:15 : INFO  : Building c3ry3B_.16.pdb
18/01/2012 11:52:16 : INFO  : Building d1vr5a1.17.pdb
18/01/2012 11:52:16 : INFO  : Building c2d5wA_.18.pdb
18/01/2012 11:52:17 : INFO  : Building c3lvuB_.19.pdb
18/01/2012 11:52:17 : INFO  : Building c3pamB_.20.pdb
18/01/2012 11:52:20 : INFO  : Finished HH model building
18/01/2012 11:52:20 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 11:52:24 : INFO  : html domain output complete ID '7920c6d1405d4853'
18/01/2012 16:45:30 : INFO  : Run end  : Wed Jan 18 16:45:30 GMT 2012
