BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (238 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 489 e-137 UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) ... 425 e-118 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 219 6e-56 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 217 3e-55 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 200 3e-50 UniRef50_P38684 TorCAD operon transcriptional regulatory protein... 190 3e-47 UniRef50_A0L527 Two component transcriptional regulator, winged ... 189 8e-47 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 182 9e-45 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 180 3e-44 UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein... 179 5e-44 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 179 9e-44 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 179 1e-43 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 178 1e-43 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 176 4e-43 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 176 7e-43 UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=... 176 8e-43 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 174 3e-42 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 173 5e-42 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 172 8e-42 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_B8IVD0 Two component transcriptional regulator, winged ... 169 5e-41 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 169 7e-41 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 169 9e-41 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 167 3e-40 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 167 3e-40 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 167 3e-40 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 163 4e-39 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 162 1e-38 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 161 2e-38 UniRef50_B6R185 Response regulator in two-component regulatory s... 161 2e-38 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 159 6e-38 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 157 2e-37 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 157 3e-37 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 157 3e-37 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 155 9e-37 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 155 1e-36 UniRef50_C6QH06 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A8GAJ9 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 152 8e-36 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A7HP70 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomo... 151 2e-35 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 T... 150 4e-35 UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobact... 150 4e-35 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 150 5e-35 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 150 5e-35 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 149 7e-35 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 148 2e-34 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 147 2e-34 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 147 2e-34 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 146 6e-34 UniRef50_A9DQD6 Probable two-component response regulator protei... 146 6e-34 UniRef50_A3PND2 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 145 1e-33 UniRef50_Q1GMB0 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_A1SYE4 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 144 2e-33 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A1VSF0 Two component transcriptional regulator, winged ... 144 3e-33 UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like rec... 144 3e-33 UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudoma... 143 5e-33 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 143 6e-33 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 143 6e-33 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 143 6e-33 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 143 6e-33 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 142 7e-33 UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticu... 142 8e-33 UniRef50_B0SB02 Sensor protein of a two-component response regul... 142 8e-33 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 142 9e-33 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 142 9e-33 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 142 9e-33 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 141 1e-32 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 141 2e-32 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 140 2e-32 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 140 3e-32 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 140 4e-32 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 140 4e-32 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 139 5e-32 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 139 6e-32 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 139 6e-32 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 139 7e-32 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 139 8e-32 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 139 8e-32 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 139 9e-32 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_D0XTW5 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 138 1e-31 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 138 2e-31 UniRef50_A6TM13 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 137 2e-31 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria R... 137 3e-31 UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=... 137 3e-31 UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=... 137 3e-31 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 137 4e-31 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 137 4e-31 UniRef50_C7LNV6 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 136 5e-31 UniRef50_Q11E93 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_C7PII2 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_C4L703 Two component transcriptional regulator, winged ... 136 6e-31 UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organi... 136 6e-31 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 136 7e-31 UniRef50_C8R030 Two component transcriptional regulator, winged ... 136 7e-31 UniRef50_A4TVF9 Response regulators consisting of a CheY-like re... 136 7e-31 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 135 8e-31 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 135 8e-31 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 135 9e-31 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 135 9e-31 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 135 1e-30 UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphap... 135 1e-30 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 135 1e-30 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 135 2e-30 UniRef50_C3JXL3 Oxidative stress related two component system, t... 135 2e-30 UniRef50_C6WIA6 Two component transcriptional regulator, winged ... 135 2e-30 UniRef50_Q5HR28 Response regulator saeR n=60 Tax=Staphylococcus ... 134 2e-30 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 134 2e-30 UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 T... 134 2e-30 UniRef50_B8IIA6 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 134 2e-30 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 134 3e-30 UniRef50_C8QI30 Two component transcriptional regulator, winged ... 134 3e-30 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 134 3e-30 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 134 3e-30 UniRef50_C8SKC4 Two component transcriptional regulator, winged ... 134 3e-30 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 134 3e-30 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 134 3e-30 UniRef50_Q2W1M5 Response regulator consisting of a CheY-like rec... 134 3e-30 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 134 4e-30 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 133 4e-30 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 133 4e-30 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 133 4e-30 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 133 4e-30 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 133 4e-30 UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniib... 133 5e-30 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 133 5e-30 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 133 5e-30 UniRef50_A4AL32 Putative two-component system response regulator... 133 6e-30 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 132 7e-30 UniRef50_Q2P1E0 VirG-like two component response regulator n=13 ... 132 7e-30 UniRef50_C4L340 Two component transcriptional regulator, winged ... 132 8e-30 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 132 8e-30 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 132 8e-30 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 132 9e-30 UniRef50_Q1NBG5 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Copr... 132 1e-29 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_Q1GKH2 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 132 1e-29 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 132 1e-29 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 132 1e-29 UniRef50_B8FS97 Two component transcriptional regulator, winged ... 131 1e-29 UniRef50_Q3A190 Two component signal transduction response regul... 131 2e-29 UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=I... 131 2e-29 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_B5ZPT0 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_A4J267 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 130 3e-29 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_A0Z5Z4 Two component transcriptional regulator, winged ... 130 3e-29 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 130 3e-29 UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteob... 130 4e-29 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 130 4e-29 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 130 4e-29 UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6... 130 4e-29 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 130 5e-29 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 130 5e-29 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 130 5e-29 UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridi... 130 5e-29 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 130 5e-29 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 129 6e-29 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 129 6e-29 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 129 6e-29 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_C0WE14 Two-component system transcriptional regulator n... 129 6e-29 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 129 6e-29 UniRef50_B7K6Q7 Two component transcriptional regulator, winged ... 129 6e-29 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 129 7e-29 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 129 8e-29 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 129 9e-29 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 129 9e-29 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 129 1e-28 UniRef50_C4RGF6 Two-component system response regulator receiver... 129 1e-28 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 129 1e-28 UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholde... 129 1e-28 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_D1AFR9 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr... 129 1e-28 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 129 1e-28 UniRef50_B1ZLF1 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_B8G179 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_A1VTZ3 Two component transcriptional regulator, winged ... 128 1e-28 UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia... 128 2e-28 UniRef50_B7JF46 DNA-binding response regulator n=87 Tax=Bacteria... 128 2e-28 UniRef50_C8X3Y5 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria ... 128 2e-28 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 128 2e-28 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 127 2e-28 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 127 2e-28 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 127 2e-28 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 127 3e-28 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 127 3e-28 UniRef50_B4WZT8 Response regulator receiver domain protein n=1 T... 127 4e-28 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 127 4e-28 UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=... 127 4e-28 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 127 4e-28 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 127 4e-28 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 127 4e-28 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 127 4e-28 UniRef50_Q398T9 Two component transcriptional regulator, winged ... 127 4e-28 UniRef50_A4EGJ5 Two component transcriptional regulator, winged ... 127 5e-28 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 126 5e-28 UniRef50_D1U371 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_B6R2K8 Two component transcriptional regulator, winged ... 126 5e-28 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ Sbjct: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED Sbjct: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 >UniRef50_Q5MDG2 Aerobic respirator control protein A (Fragment) n=161 Tax=Bacteria RepID=Q5MDG2_ECOLX Length = 207 Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/207 (100%), Positives = 207/207 (100%) Query: 20 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 79 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF Sbjct: 1 KSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMF 60 Query: 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 139 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF Sbjct: 61 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKF 120 Query: 140 NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDR 199 NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDR Sbjct: 121 NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDR 180 Query: 200 TVDVTIRRIRKHFESTPDTPEIIATIH 226 TVDVTIRRIRKHFESTPDTPEIIATIH Sbjct: 181 TVDVTIRRIRKHFESTPDTPEIIATIH 207 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 150/234 (64%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+GL Sbjct: 9 PHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDGL 68 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 69 TLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVAQ 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++F GW L+ + R L+ PDG +LP+ EF+ ++ + G++ SR Sbjct: 129 CAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLSRD 188 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +L+ + RE P+DRTVDV + R+R+ + P P +I T HG GY F G+L+ Sbjct: 189 QLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFAGELD 242 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 146/233 (62%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T++ SE+ F GW LDI R L PDG +L R EF + F PG++ Sbjct: 121 TLSAREASEDE---NQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVM 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL ++ R+ P DRTVDV + R+R+ E+ P P I T+HG GY F Sbjct: 178 TRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 154/243 (63%), Gaps = 11/243 (4%) Query: 1 MQTP---HI--LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 MQ P H+ L+V+D+LV + + + F EGY V A DG + L++ +++LV++DI Sbjct: 1 MQAPLESHVTLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDI 60 Query: 56 NLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 NLPG++GL LARELR + A++ ++ +T R+++VDKI+GLE+GADDY+TKPFNPREL R Sbjct: 61 NLPGQDGLSLARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARV 120 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 ++LL R+ + + +S +F GW L+++ R L G+ L R EF + Sbjct: 121 KSLLRRS-----ATRPAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVLALLVR 175 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +PG+I R L + ++G + P DR+VDV +RR+R + T +IATI GEGYR Sbjct: 176 HPGEILDRDRLSRAVSGHDWSPQDRSVDVLVRRLRAKLDDPARTDSLIATIRGEGYRLAA 235 Query: 235 DLE 237 D+E Sbjct: 236 DVE 238 >UniRef50_P38684 TorCAD operon transcriptional regulatory protein torR n=165 Tax=Gammaproteobacteria RepID=TORR_ECOLI Length = 230 Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/233 (42%), Positives = 150/233 (64%), Gaps = 8/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HI+IVEDE VT+ L+S F EGY V GA + +I+ ++L+++DINLP +NGL+ Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLM 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LRE++ V ++ +TGR + +D+I+GLE+GADDY+TKP REL +R +NLL R ++L Sbjct: 64 LTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR-IDL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ Y+F G+ L++ SR + DGE KL R+E+ ++ F NPG+I SR Sbjct: 123 ARQAQPHTQDNCYRFAGYCLNV-SRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRER 181 Query: 185 LLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL+ ++ R ++ P RTVDV IRR+R + +++ T HGEGY D+ Sbjct: 182 LLRMLSARRVENPDLRTVDVLIRRLRHKLSA-----DLLVTQHGEGYFLAADV 229 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 143/236 (60%), Gaps = 4/236 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ VTR L F GY A D M ++L+ I+LV++DINLPG++ Sbjct: 3 QRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPGRD 62 Query: 62 GLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + LR E A + ++ ++ R EVD+I+GLE+GADDY+ KPFN REL R + LL R Sbjct: 63 GLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLLRR 122 Query: 121 TMNLGTVSEERRSVE---SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + + R ++ SY+F+ W L ++R + DG Q +L EFR +L F G Sbjct: 123 IDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLLAFVNRAG 182 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + QSR +LL ++ RE P+DRT+DV + R+R+ E P+++ TIHG GY+F Sbjct: 183 RAQSRDQLLDAVSNREWSPNDRTIDVMVNRLRRKLEVDARDPKLLITIHGVGYQFT 238 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/236 (38%), Positives = 138/236 (58%), Gaps = 5/236 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI+I+EDE VTR TL + GY V + +L+ +L+++DI L GK+ Sbjct: 3 RAAHIVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDGKD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE R ++++ ++ T ++VD+I+GLE+GADDY+ KPFN REL R +NLL RT Sbjct: 63 GLQITREQRARSDIGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLLRRT 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ R S ++ +F+G+ +R LI PDGE ++ R+EF + +PG++ Sbjct: 123 E-----AQRRFSRQNVRFHGYAFAFATRQLIAPDGEPIRITRAEFEVLAELLRHPGEVLG 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R L+ +T R+ P RTVDV IRR+R E P I T HGEGY F L+ Sbjct: 178 RERLMTVITHRQQHPDTRTVDVIIRRLRTKLEEDASAPRFITTAHGEGYVFTATLD 233 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 139/234 (59%), Gaps = 8/234 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HI +++DE+ L + ++ G+ V + +G + ++ +LV++D+ LPG++G Sbjct: 6 HIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT--- 121 +AR +RE L+ +TGR + VDK++GLE+GADDY+TKPF+ REL R + +L R Sbjct: 66 IARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPD 125 Query: 122 -MNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 + + R S + +F GW+LD+ +RSL P G+ L EF + F +P Sbjct: 126 DAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCAFARHP 185 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 G++ SR LL++ GRE P DRT+DV + R+RK E+ PD P+I+ ++ G GY Sbjct: 186 GRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGY 239 >UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein TorR n=1 Tax=Rhodospirillum centenum SW RepID=B6ITF9_RHOCS Length = 241 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 144/237 (60%), Gaps = 5/237 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P +LIVEDE TR L + F G+ + EA +G + + L +LV++DI LP ++G Sbjct: 7 APLVLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPDEDG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +AR +RE +NV ++ +T R NE D++ GLE G DDY+TKP NPREL RARNLL RT Sbjct: 67 FSIARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLRRTH 126 Query: 123 NLGTVSEERRSVESY-KFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 S+ RR+ + +F GW +D+ R LI P+G++ ++ R EF + + G++ + Sbjct: 127 P----SKMRRAEGTVRRFGGWTMDLARRRLIDPEGQEIRVTRGEFELLALLVRSGGRVVT 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R +L+ ++G + P+DRT+DV + R+R+ T +P +I T G GYR D+ D Sbjct: 183 RDQLIDAVSGTDRNPNDRTIDVLVSRLRRKMCDTGVSPRLILTEKGLGYRLGVDVTD 239 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLG---TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R L +E + +F GW LD R L+ PDG L +E+R + F + P Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYP 180 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ SR +LL GR + DR++DV + R+R P+II T+ G+GY D+ Sbjct: 181 NRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 Query: 237 E 237 E Sbjct: 241 E 241 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 1/232 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP + Sbjct: 12 VAIPSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDE 71 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R Sbjct: 72 DGLSLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR 131 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + SE + F+GW +D R L P G + L +EF + FCE G++ Sbjct: 132 QASALNASEN-VGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVL 190 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR LL+ G DR++DV + RIR+ E+ P +I T+ GY F Sbjct: 191 SREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 141/239 (58%), Gaps = 1/239 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D V R TL+S F EGY V A Q+LSE + +L+++DI LPGK Sbjct: 3 MSDIKILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPGK 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RELR ++ V ++ +TG+ +++D+I+GLE GAD+Y+ KPFN RE+ R +NL+ R Sbjct: 63 DGLTLTRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRR 122 Query: 121 TMNLGTVSEERRSVESYKFNG-WELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 N ++++ ++ G W+LD + R L+ D +L EF+ +L N G Sbjct: 123 VRNQRELAKKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEGVA 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +R +L+ ++ R DRT+DV I RIR+ P P++I T+HG GY + +D Sbjct: 183 LTRDQLMDRIKNRTWNATDRTIDVLIGRIRRKLSEDPHCPQMIITVHGVGYLLSNNPQD 241 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 3/228 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I IV+DE + ++TL S F+ G+ V A ++ ++++ I+ +++DI LP +GL L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++R ++V ++ +T R E D+I+GLE+GADDY+TKPF+PRE+ R + +L RT Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTR--- 130 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V++ R +F GW LD+ + L GE +L +EF + +PG+I SR +L Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDL 190 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L M+ RE +DRTVDV + R+R+ E+ P P+II T +G GY F Sbjct: 191 LDVMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVFA 238 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 132/231 (57%), Gaps = 2/231 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++ Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR- 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G + + V F G+ LD R L+ PDG Q L +EF + C PG++ S Sbjct: 135 -GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLS 193 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL GR P +R++DV + RIR+ E PE+I TI GY F Sbjct: 194 RDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVF 244 >UniRef50_A8LR92 Two component transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A8LR92_DINSH Length = 234 Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 138/232 (59%), Gaps = 5/232 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HILIVED+ TR L + +GY V EA + +M Q L + L+++DINL GK+G Sbjct: 2 TGHILIVEDDRTTRMRLAAYLREQGYRVSEAENAEQMEQTLHDDPAELLLVDINLDGKDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE R + V ++ LT RD++VDKI+GLE+GADDY+TKPF+ REL R +NLL+R Sbjct: 62 LTITREQRAVSRVGIILLTARDDQVDKIVGLEMGADDYVTKPFDKRELAARVKNLLARIT 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++G + +V + F W D R LI L + EF M ++PG+ SR Sbjct: 122 DIGQAPQGAHAV--HDFGPWRFDRIRRRLISA-ARIEPLSKQEFDVMTALADHPGQTLSR 178 Query: 183 AELLKKMTGREL-KPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 A + +M GR + ++R +DV + R+RK E P PE I T HG+GY+F Sbjct: 179 AR-IAEMIGRPAGRGNNRMIDVVVGRLRKKVEKDPARPEWILTEHGKGYQFV 229 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 129/237 (54%), Gaps = 3/237 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 +ER + +FNGW LD R L P + EF +L FC NPG++ S Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLS 201 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R ELL P +R+VDV + RIR+ E P ++ T+ GY F +E+ Sbjct: 202 REELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEE 258 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 4/233 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q HILIVED+ R L G+ DG+++ + + +LV+MD+ LPG++ Sbjct: 10 QRDHILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGED 69 Query: 62 GLLLARELREQANVA---LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL L R LR A A ++ LT R E D+I+GLE+GADDY+ KPFNPREL R +++ Sbjct: 70 GLTLTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVM 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R + + V+ Y+F+GW LDI SR L PDGE L R E+ + F +NP Sbjct: 130 RRARSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELLNIFLQNPQT 189 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFE-STPDTPEIIATIHGEGY 230 + +R ++ + GRE P +R +DV I R+RK + D E+I T+ G+GY Sbjct: 190 LLNRDAIMMRYGGREASPFERGIDVQIGRLRKRLQYDNADPQEMIKTVWGQGY 242 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 3/237 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT G ++ +F GW LD ++R L+ PDG L +E+R + F +NP ++ Sbjct: 121 RTE--GGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ELL++ GR P+DR++DV I R+R P++I T+ G+GY D+ Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 1/227 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + +Y+F+GWEL++ +R L P G +L EF + F PG++ SR Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRD 186 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +LL+ + +DR++DV I R+R+ E P P I T+ G GY Sbjct: 187 QLLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGY 232 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 135/233 (57%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + F GW LD ++R + P+G L S++ + E+P + SR Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRDF 185 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L++ + G+E DR++DV I R+R H E+ P II T+ GY ++ Sbjct: 186 LVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVK 238 >UniRef50_B8IVD0 Two component transcriptional regulator, winged helix family n=10 Tax=Alphaproteobacteria RepID=B8IVD0_METNO Length = 245 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 143/242 (59%), Gaps = 7/242 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + PHILI +D+ R L E+EG+ V A G M + L+ I+LV++D+ L G++ Sbjct: 3 EPPHILITDDDPRIRQMLSRYLESEGFRVSTAESGTAMRKALASEKIDLVLLDLVLAGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL LARE+R + V ++ +TGR + +D ++GLE+GADDYI KPF RE+ R R++L R Sbjct: 63 GLELAREIRASSRVGIIMVTGRSDIIDMVVGLEVGADDYIAKPFQLREVLARTRSVLRR- 121 Query: 122 MNLGTVSEERRSV------ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 + +E ++V E F GW LDI+ R L+ P+G++ L EF + ++ Sbjct: 122 LQPSASTETAKAVGPSSRAEVIGFEGWRLDISRRELMSPEGQEVPLTTGEFDLLAAMAKH 181 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 PG++ SR L+ GRE DR++D + R+R+ E+ P P++I ++ G GY F G Sbjct: 182 PGRVLSRDMLMDLTRGREWDALDRSIDAQVVRLRRKLEADPKNPKLIKSVRGAGYVFAGR 241 Query: 236 LE 237 +E Sbjct: 242 IE 243 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+DE R L +G+ + EA A +L ++ ++DI +PG++GL Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E ++ ++ LT R D+I+GLEIGADDY+TKPF PREL R R++L R Sbjct: 72 LTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V E Y F GW+LD R L PDG + +EFR + F ++P K+ R Sbjct: 132 PAVDAED---AFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDR 188 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + GRE DR VD + R+R+ E+ P I T+ G GYRF D+ Sbjct: 189 LLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADV 240 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 131/234 (55%), Gaps = 5/234 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++ Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 122 MNLGTVSEERRSV--ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 SE S+ S +F W L+ R L+G DG L +EFR + E PG+I Sbjct: 123 T---PASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R ELL K++GR +P DR++D I R+R+ E P P I T G GY F Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 132/225 (58%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R L + GY+V A DG +M + L+ + LV++D+ LPG++GL L Sbjct: 5 LLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGLSL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+L+ +A++ L+ + + +D+I+GLE+GADDY+ KPF PREL R + +L R L Sbjct: 65 CRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLD 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 +EE +++ F G+ L+ R L PDGE LPRS++R + E ++ SR +L Sbjct: 125 AQAEEPAVMDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQL 184 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 + GR+ P DR+VD+ + R+R+ P I TI EGY Sbjct: 185 TRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGAAQILTIRNEGY 229 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 136/233 (58%), Gaps = 2/233 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R N Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLEN- 200 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + R SY+F GW LD R L P + +L +EF + F ++ I SR + Sbjct: 201 -NRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRDQ 259 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L++ + + +DR+VD+ I R+R+ +P++I TI GY+F ++E Sbjct: 260 LMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEVE 312 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 129/227 (56%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG +GL L Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L R+ Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V+ + F+GWEL R+L+ P G L +EFR + F + P ++ SR +L Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +++ GR + +R++D+ + R+R+ PD P +I T+ G GY F Sbjct: 215 MEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 3/233 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVED+ + L + + G++ GA M +++ +L+++D LPG++G Sbjct: 14 HILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFS 73 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++L R Sbjct: 74 ICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA--- 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + ++ F+GW +D SR L DG Q + +EF +L FC NP K+ +R + Sbjct: 131 SYAHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQ 190 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL P +R++D I R+R+ E P I T+ GY F +E Sbjct: 191 LLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVE 243 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 133/233 (57%), Gaps = 6/233 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGL 63 +L+V+D+ TRN LK+ E Y+V A DGA + + +++LVI+D+ LP +G Sbjct: 14 LLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDGF 73 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R M Sbjct: 74 TLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKA-IHRRMQ 132 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 LG V KF G+ +D+ R L P G+ L +F + F E+ G+ RA Sbjct: 133 LGAPGA---PVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETLDRA 189 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 L+++ GR+L P DR++DV + R+R+ P +I T+ G GY F D+ Sbjct: 190 RLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADV 242 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 LIV+D++ R L + TDG +M Q L++ ++V++D+ LPG++GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 R LR +++ ++ LT R D+I+GLE+GADDY+ KPF PREL R + +L R + Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD--E 150 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELL 186 S++R ++ +F+ W L+ R L DG L +EFR + F E P ++ SR +LL Sbjct: 151 RSDQRTTI---RFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLL 207 Query: 187 KKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 GR ++ DR++D+ + R+R+ P P++I T+ GEGY F Sbjct: 208 DAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 253 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK-NGL 63 IL VED+ L F +GY V A DGA M + L+ +LV++D+ LPG+ +G Sbjct: 25 RILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGREDGY 84 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +LAREL+++ ++ ++FL+ R + +D+I+GLEIGADD++ KPF PREL R R +L R + Sbjct: 85 VLARELKKERDIGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRR-LP 143 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 GT + R F+GW LD+++R L G L EF + + PG++ SR Sbjct: 144 AGT-ARPRGEGRRIGFDGWLLDLDARVLRDAQGGVQNLTTQEFNLLSVLAQRPGRVLSRD 202 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL R P+DR+VDV I +IR+ P I TI G GY F Sbjct: 203 QLLDLTVSRHWSPYDRSVDVMIGKIRRKIGDNGPEPRRIRTIRGTGYMFS 252 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 2/232 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++GL Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L R Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + + F W+LD +R L+ G L +E+R + F ++P ++ +R Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +LL GR+ P DR++D+ I R+R+ + P I T+ EGY F Sbjct: 186 DQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSA 237 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 133/228 (58%), Gaps = 2/228 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ + + GY VF A E ++L I+L+++DI LPG+NGL L Sbjct: 8 LLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENGLTL 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R+ + + ++ ++ + ++I+GLE+GADDY+ KPFNPREL R + RT ++ Sbjct: 68 CQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRTEDVE 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 T + + + ++F+GW+LD +R L PDG L SEF A+L F ++P K SR L Sbjct: 128 TAAAPK--AQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALLTFVKSPQKPISRDTL 185 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + + G ++ HDR++D+ I R+RK T + I T+ +GY F Sbjct: 186 GRVLRGAKVDSHDRSIDILISRLRKKLAQTDPNTDFITTVRHQGYLFS 233 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 127/234 (54%), Gaps = 1/234 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G+ Sbjct: 28 PHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGI 87 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 88 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 T E S Y+F GW L+ + R L+ P G + L E+ +L + P ++ +R Sbjct: 148 NETPGRE-SSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRD 206 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + GR+ P DR +DV I R+R+ E +II T+ G GY +E Sbjct: 207 MLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPVE 260 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 131/229 (57%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ + E + V A G M QIL + I++V++D+ LP ++GL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L R +L Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + SY F+GW +D SR+L P G + L E + F +P ++ SR + Sbjct: 126 PETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLSRDQ 185 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L G++ +P RT+D+ + R+RK P +I T+ GY FC Sbjct: 186 ILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFC 234 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSR-- 145 Query: 125 GTVSEERRSVES-----YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 ++ RR + +F W L+ R L+ + L +EFR +L F E+P ++ Sbjct: 146 ---ADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRV 202 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R L+ GR+L DR++D+ + R+R+ P +I T+ GEGY F G +E Sbjct: 203 LDREMLINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFTGTVE 260 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 2/238 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELREQANVA--LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + A ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT L + + + F W+LD +R LI DG L +E+R + F ++P ++ Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R +LL GRE + +R++D+ + R+R+H P I T+ EGY F +E Sbjct: 184 LNRDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVFSTPVE 241 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 1/233 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S + F GW LD+ R L PD E L EF + + G++ Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R ++L + R P DR++DV I ++R+ +II T+ G GY F Sbjct: 181 LTRDQILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVF 233 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 4/231 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 +Q P +L+V+D+ R + A GY V A + AEM ++++ +L+++D+ +PG+ Sbjct: 6 LQPPCVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGE 65 Query: 61 NGLLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL AR L E+ + A++ L+ N+ D+I+GLE+GADDY+ KP NP EL R R LL Sbjct: 66 DGLSAARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLR 125 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ + S++R +V Y+F GW LD+ R L P G L EF + F E+P ++ Sbjct: 126 RSQSSNEQSDQRGNV--YEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRV 183 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 SR +LL+ GR+ +DR +D I R+R+ T E+I T+ EGY Sbjct: 184 LSRDQLLECARGRDTDVYDRAIDSQISRLRRKINERVHT-ELIRTVRNEGY 233 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + + F W+LD +R L+ G L +E+R + F ++P ++ SR Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL GRE + DR++D+ + R+R+ P I T+ EGY F Sbjct: 186 DQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 136/238 (57%), Gaps = 8/238 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP IL+V+D+ R L E + + V A AE+ Q L+ I+LV++D+ LP + Sbjct: 33 QTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGS 92 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-S 119 GL R+LR + N + ++ LT +VD+ILGLE+GADDY++KPFNPREL R R +L Sbjct: 93 GLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR 152 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ V R +Y+F G+ D RS++ P G +L +EF + F + PG++ Sbjct: 153 RSETPAPVGASR----AYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRV 208 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR +LL GR DR++DV I R+R+ + + T ++ T+ GY+F +E Sbjct: 209 LSRDQLLDFTRGRS-DTFDRSIDVLISRVRRKLDPS-GTARLLKTVRNGGYQFVVKVE 264 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 135/231 (58%), Gaps = 5/231 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILI++D+ + + A +G + Q+L + + +L+I+DI LPG +GL Sbjct: 12 HILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLD 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 72 LCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQ-- 129 Query: 125 GTVSEERRSV---ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G +S+ER+ + + F+ W LD N+ SLI D L + E+ +L F E+PG+I + Sbjct: 130 GDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILN 189 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +L+ + ++ DRT+DV I R+RK E P P+++ TI G GY+F Sbjct: 190 RDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQF 240 >UniRef50_C6QH06 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QH06_9RHIZ Length = 242 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 138/236 (58%), Gaps = 2/236 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL+V+DE R L++ FE EGY V EA D A L+E ++LV +D+ L ++G Sbjct: 2 TTKILVVDDEPEIRRLLRTCFEREGYAVAEAADAAATRAALNEDIVSLVTLDLALGQEDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-- 120 L LARE+R + +V ++ ++G+ + VD+I+GLEIGADDYI+KPFN RE+ R R++L R Sbjct: 62 LSLAREIRAKHDVPIVMVSGKGDTVDRIVGLEIGADDYISKPFNLREVLARVRSVLRRHD 121 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 N + + E Y+F GW LD SR L +G +L +EF + F P + Sbjct: 122 GGNRAASTTSSPAHEIYEFAGWSLDATSRELKDENGVSRELTTAEFNLLEMFARRPHRAL 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R E++ + G + P DR++D + R+R+ ++ T I +I G GY F D+ Sbjct: 182 TRDEIMDILKGHDYSPLDRSIDALVSRVRRKIDNGSSTSPKIKSIRGIGYMFASDV 237 >UniRef50_A8GAJ9 Two component transcriptional regulator, winged helix family n=54 Tax=Gammaproteobacteria RepID=A8GAJ9_SERP5 Length = 246 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 4/238 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPGKNG 62 P +LIV+D+ + L + + V G+E +LS+ DI LV++D+ LP NG Sbjct: 3 PAVLIVDDDPAICDLLCDVLNEHVFSVHACHRGSEALTLLSQQPDIALVLLDLILPDTNG 62 Query: 63 LLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 LL+ +++ R + ++ ++ LTG +E D ++GLE+GADDYI KPFNPR + RA+ +L RT Sbjct: 63 LLVLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLRRT 122 Query: 122 --MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + L + R E ++FNGW LD +L P + L + E+ +L ++ K+ Sbjct: 123 GALALEPATAGRNKPEGWQFNGWCLDTARCTLHNPQRQPVDLTQGEYGLLLALVQHARKV 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R LL+ L+ DRT+DV I R+R+ E P PE+I TI G GY F D+ Sbjct: 183 LTRDRLLELTHSETLEVFDRTIDVLIMRLRRKIEINPHQPELIRTIRGLGYVFAADVS 240 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGLL 64 +LIVED+ R+ ++ EG + DG ++LS+ +LV++D+ LPG +G+ Sbjct: 4 VLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGIS 63 Query: 65 LARELREQAN----VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + RELRE + V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R L R Sbjct: 64 VCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S E+R +E F G E+D+ R + GEQ +L EF + NPG++ Sbjct: 124 QRMNAQASPEQRKLE---FPGLEIDLLRRRVTA-RGEQVELTAREFEVLALLASNPGRVY 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +++ + G E R+ DV I+ +R+ E P P I T+ G GYRF Sbjct: 180 SREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 135/236 (57%), Gaps = 4/236 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + LG+ + + +++ ++K G +DI S+ ++ ++ L E + F NP ++ Sbjct: 121 FLVLGSNANTQEKTILTFK--GLTIDI-SKYIVTVGDKEISLTGKELELLKFFASNPEQV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ +L + + D TV V IR++RK E+ P P+ I T+ G GY+F G+ Sbjct: 178 FTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 131/237 (55%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAE-MHQILSEYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G + +E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + V + Y+F + LD SR L D E+ L +++ ++ F +PG + Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKD-EKESLSGADYNLLMLFLTHPGAVL 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R + + GR+ P DR +DV + R+R+ P++I TI G+GY +E Sbjct: 182 TRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238 >UniRef50_A7HP70 Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP70_PARL1 Length = 257 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R +++ A G + EA D A ++ S +LVI+D+ L NG + Sbjct: 21 LLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMFSGGKFDLVILDLLLGADNGFDV 80 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RE+R+ + + +TG+ DK++GLE+GADDY+ KP N REL R R LL RT N G Sbjct: 81 LREIRQTHSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRRTANSG 140 Query: 126 TVSEERRSVESYKFN----GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 S R + + + W+ D + R L PDG L +E ++ + G Q+ Sbjct: 141 G-SGARTNAGAADSDEAAAQWKFDPHRRRLCAPDGALVPLTTAECDLLIELVAHEGNPQT 199 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R EL +++ R+ +P+DR++D + ++R+ E PD P +I TI G+GY F G Sbjct: 200 REELCRRVFNRQWQPYDRSLDSIVVKLRRKLEPNPDHPMVIKTIRGKGYLFTG 252 >UniRef50_Q1NHY5 DNA-binding response regulator n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHY5_9SPHN Length = 242 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 5/233 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ R+ + E Y + A AE+ + L E ++L+++D+NLP +GL+L Sbjct: 12 VLVVDDDADIRDLIIGQLHQENYRLLAAASLAELRRTLKEEAVDLIVLDLNLPDGDGLML 71 Query: 66 ARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 RELR E A+V ++ +T R + +D++LGLE+GA+DY+TKPF PREL +R RNLL R Sbjct: 72 CRELRAEGADVQIIMVTARGSAIDRVLGLELGANDYLTKPFEPRELLVRIRNLLRR--GR 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 G + + +F W LD+ R L+ PD L +EFR + F E P + SR Sbjct: 130 GDPTARPAAARFARFGPWRLDLQQRRLVAPDDSLVMLSSAEFRLLSRFIEEPNVVLSRET 189 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L+ + R DR++D+ + R+R+ + P E+I T+ GEGY +E Sbjct: 190 LVPER--RATAAFDRSIDLQVSRLRQKLATVPGGDELILTVRGEGYVLASGVE 240 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 123/229 (53%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 2 PHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 62 SLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTAE 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L + F GW LD+ R L D L EF +L F E+ ++ +R Sbjct: 122 LEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTRD 181 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL G DR++DV + R+R E P P +I T+ GY F Sbjct: 182 QLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIF 230 >UniRef50_B7RXJ1 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RXJ1_9GAMM Length = 219 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/216 (36%), Positives = 125/216 (57%), Gaps = 11/216 (5%) Query: 24 EAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 E EG+DV AT +I S DI++V++D+N+PG +G +A+EL + ++F+TG Sbjct: 2 EKEGFDVHSATSSPSALEIFSSLDIDIVLLDLNIPGTHGFEIAKELLSLKKIGIIFITGS 61 Query: 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVES------Y 137 +VDKI+GLE+GADDYI KPF+ REL R R++L R L V++ ES Sbjct: 62 TEQVDKIVGLELGADDYIQKPFDFRELLARIRSVLRR---LDHVTDNSSGSESEAGHLKA 118 Query: 138 KFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPH 197 F W+LD ++ + G D +L E+ +L ++ ++ R LL ++ R P+ Sbjct: 119 HFGNWQLDCLTQEISGKDNATPELTSHEYFILLALLKSNNRVLPRDFLLNAISSRNWTPY 178 Query: 198 DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 DR++DV + ++RK + + E I TI G+GY+FC Sbjct: 179 DRSIDVLVGKLRKKLQC--ENGEYIKTIRGQGYKFC 212 >UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW86_9RHOB Length = 242 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 5/237 (2%) Query: 1 MQTPH--ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP 58 M+ P I +VED+ + R + Y+V A ++ + ++ D+++ ++D+ LP Sbjct: 1 MKLPQKTIALVEDDGLARAEICEYLRYNNYEVLSAGTQSDFEKKIANADVDIFLIDLGLP 60 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 +GL + R L+ +AN ++ L+GR +++DK++ LE+GADDYITKPFNPRE+ R +LL Sbjct: 61 DGDGLDVIRGLKGRANCGIIVLSGRSDDIDKVVCLEVGADDYITKPFNPREMLARVHSLL 120 Query: 119 SRTMN---LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 R N +S E + F W LD N+R L D + L RSEF ++ F +N Sbjct: 121 RRLENKNETADLSTESTTDSIISFLDWSLDTNTRQLFDADNIETPLTRSEFDLLVFFLKN 180 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 P + SR L+ + G +DR +D + R+R + I T+HG GY F Sbjct: 181 PNRALSRETLIANLRGSNWAGYDRAMDGLVSRLRGKLSKGNSSINYIKTMHGVGYLF 237 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 8/238 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLG---TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 L +SE R + F W LD +R L+ D L +E+R + F ++P ++ Sbjct: 126 MLPPNLLISETGRLL---AFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQRV 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR +LL GR+ DR++D+ + R+R+ P I T+ EGY F +E Sbjct: 183 LSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVFSFAVE 240 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 6/237 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+VED+ R + + G+ DG EM + + +L++MD+ LPG +G Sbjct: 19 APYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR+ + V ++ ++ R E+D++LGLE+GADDYI KPF +EL R R +L R Sbjct: 79 FDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-- 136 Query: 123 NLGTVSE--ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G V+E + E+ F GW++D+ R L P G L +E+ +L F EN ++ Sbjct: 137 --GPVNEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVI 194 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R LL+ R DR++DV + R+R+ + +I TI G GY F D+E Sbjct: 195 GRDRLLELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAADVE 251 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 11/243 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q PHIL+V+D R+ + E G A++ EM L +L+I+D+ +PG++ Sbjct: 6 QLPHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL AR L ++ L+ E D+++GLEIGADDY+ KPF+PREL R + +L R+ Sbjct: 66 GLSAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRS 125 Query: 122 MN----LGTVSEERRSVESYKFNGWELDINSRSLI--GPDGEQYKLPRSEFRAMLHFCEN 175 GT+ + F GW LD ++R L+ + L +EF+ ++ F E Sbjct: 126 ERREPLAGTLGGRK-----LGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLER 180 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 P + +R +LL +GR + DRT+D + R+R+ E P P+II T+ GY D Sbjct: 181 PRFVLTREQLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAAD 240 Query: 236 LED 238 + + Sbjct: 241 VRE 243 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I++V+DE R T+ +G+ V A G ++ +L+ +L++MD+++PG++GL Sbjct: 13 RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLT 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 LAR +R A ++ LT D+ VD++ GLE+GADDY+ KPF+ REL R R +L R + Sbjct: 73 LARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTAV 132 Query: 125 GTVSEERRSVESYKFNGWE--------LDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 + E G + LD+ + L+ DG + L EF + F +NP Sbjct: 133 PPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQNP 192 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ++ +R LL R+ +P DR++DV + R+RK E+ P P+ I T+ G GY F Sbjct: 193 NRVLTRDRLLDLAHDRDNEPFDRSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLFV 249 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 10/240 (4%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M P +++V+D+ R+ + GY V A + +L +++I+D +PG Sbjct: 1 MNAPARVIVVDDDASIRDAIADCLLLHGYQVRVAAGAMALDMLLQAERPDVIILDWMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL + R L+ +A + ++ L+ + D+++GLE+GADDY+ KPF+PREL R R LL Sbjct: 61 EDGLSVCRRLQARA-IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLR 119 Query: 120 RTMNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R L T V+ E R F GW L R LI PDG + L R EF +L E PG+ Sbjct: 120 RQDKLRTQVASEMR------FAGWRLLPEQRRLIAPDGAELVLSRGEFSLLLVLAERPGR 173 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHF-ESTPDTPEIIATIHGEGYRFCGDLE 237 + +R +LL+ DR +D+ I R+R+ ++ P ++ T+ GEGYRF +++ Sbjct: 174 VLAREQLLQLSRSEPSDSVDRAIDLAISRLRRKLGQAAPGAEALVQTLRGEGYRFDAEVQ 233 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++GL + Sbjct: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN- 123 R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R N Sbjct: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 Query: 124 -LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G S+E + F ++L++ +R + D E L EF + +P + SR Sbjct: 127 LPGAPSQEEAVI---AFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPLSR 182 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L+ GRE +R++DV I R+R+ E P P I T+ G GY F D Sbjct: 183 DKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 134/228 (58%), Gaps = 13/228 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +GL + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT G Sbjct: 65 CRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT---G 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T++++ FNG L IN S + +GE+ L E+ +++ N G SR Sbjct: 122 TLNDK----NILDFNG--LTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDR 175 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +L + G + RTVD I+R+R E D IAT+ G GY+F Sbjct: 176 ILDNVWGYDYFGDIRTVDTNIKRLR---EKLLDKANYIATVRGSGYKF 220 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 136/232 (58%), Gaps = 8/232 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR- 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + SE +R V +F +D++ + L+G G++ L SEF+ + PG++ Sbjct: 126 --VHADSEPQREV--LEFGELTIDVSGHKVLVG--GKEVDLTASEFKLLTTLSRYPGRVY 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR EL++K+ G + + ++RT+D ++ +R P P+ + T+HG GYRF Sbjct: 180 SRMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 4/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G + Sbjct: 3 VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWGV 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R L Sbjct: 63 CKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---LQ 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 S K LD NSRSL G +L +E++ + F +PG++ SR +L Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIA-GTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++K+ + ++RTVD I+ +RK ++PD P I TI+G GY+ G+ Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 138/235 (58%), Gaps = 4/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 V +E ++ ++ F +D++ R +I GE+ EF ++ ++PG + Sbjct: 150 LQPKPKVEDE-AALRTFVFEQLTIDLDKREVIVA-GEKVSFRPKEFDLLVQLVKSPGSVW 207 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +LL+++ G + RT+DV I++IR+ + P + I T+ G GY+F D Sbjct: 208 SREQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGYKFGVD 260 >UniRef50_A9DQD6 Probable two-component response regulator protein n=2 Tax=Rhodobacteraceae RepID=A9DQD6_9RHOB Length = 247 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D++ R L+ E +GY V EA + +LV +D+NL Sbjct: 1 MAEKKILVVDDDVRIRTLLRRCLEGDGYRVVEAESAQSVRDAFGAAAFDLVTLDLNLGAD 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-- 118 NGL + RELR +V ++ +TG+D+ +D+++GLE+GADDY+TKPF+ RE+ R R++L Sbjct: 61 NGLDILRELRRTHDVPIVMVTGKDDVIDRVVGLELGADDYLTKPFHVREVLARVRSVLRR 120 Query: 119 -SRTMNLGTVSEERRSVES--YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 SR M T + + ++ +G ++ ++ L+ GE L ++F+ + F +N Sbjct: 121 SSRPMPAETTDRDSDTSDAPWLSLDGLKIRLDRMLLVDRQGEDCDLTTADFKLLAAFLKN 180 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 K SR L+ + G+E P DRT+D + R+RK E P +I T+ G GY Sbjct: 181 AKKPLSRDRLMDLIDGQEWAPLDRTIDNQVARLRKKVERDASRPLLIKTVRGIGY 235 >UniRef50_A3PND2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhodobacter sphaeroides RepID=A3PND2_RHOS1 Length = 233 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 126/232 (54%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL ++DE ++S E G+ V A A+ ++ ++ ++L ++D +LP NG Sbjct: 2 VPCILALDDEAAILTIVRSTLEQRGFRVVTAKSLAQFRKVDAQEQVDLYLIDTSLPDGNG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR+ ++ ++ L + +E + +LGLE+GADD + KPF REL R + RT Sbjct: 62 LSLLRELRKVSDRGIILLAPQRDEAEGVLGLELGADDTLLKPFRERELAARVGAVFRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 T R ++F+G+ L + +R L PDG + +L SEF + G++ SR Sbjct: 122 RPATSLPAGRPGIDHEFDGYGLSLQARKLWAPDGREVELTTSEFELLAALLGRRGQVLSR 181 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +++ + GR+ + +DR VD + R+R+ ++ I T+HG GY F G Sbjct: 182 DQIMNAIKGRQWESYDRVVDGIVSRLRRKLPASRSGSPFIRTVHGVGYTFAG 233 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 8/230 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V+ S+ + N L+ +LIG L +EF+ +L ENPG++ SR + Sbjct: 125 QVTN--VSISNLSINPERLE----ALIG--DTLLALTPTEFKILLLLAENPGQVFSRLHI 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L+++ G + ++RT+D I +R E+T + I T++G GY+ + Sbjct: 177 LERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_Q1GMB0 Two component transcriptional regulator, winged helix family n=7 Tax=Alphaproteobacteria RepID=Q1GMB0_SILST Length = 244 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 5/231 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P I IV+D+ R TL ++ G++ D H + ++L ++D+ L G++GL Sbjct: 12 PVIAIVDDDAQVRETLSALMHESGFESVCCPDIETFHALGDPPPVDLALIDLRLRGESGL 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 LA LRE+ + ++ LTG +E+DKI+GLE GADDY+ KPFNPREL R R +L R + Sbjct: 72 TLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYGH 131 Query: 124 LG--TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 TV+ +R + F +D+++R L+ GE+ L +E+R + NP ++ Sbjct: 132 ASARTVTSGKRQI---TFGEKRIDLDARRLLDSAGEEVPLTNAEYRLLEFLARNPERVVP 188 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R ELL+ + + DRTVDV I R+R+ E P P + T GY F Sbjct: 189 REELLEALGADTQRYVDRTVDVLILRLRRKIEPVPAKPVHLQTRRARGYVF 239 >UniRef50_A1SYE4 Two component transcriptional regulator, winged helix family protein n=4 Tax=Proteobacteria RepID=A1SYE4_PSYIN Length = 246 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 4/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE+ R + + GY DG M + + +L+I+D+ L ++GL+L Sbjct: 9 ILIVDDEVDVRILVSDVLNQAGYPCVAVADGNTMFGEMKKALFSLLIIDLRLKNEDGLVL 68 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR---TM 122 AR +RE +N+ ++ LTG+ +E D+IL LEI ADD++ KPFN REL R L R T+ Sbjct: 69 ARSVRENSNIPILMLTGKGSETDRILSLEIAADDFLMKPFNIRELVARVNALQRRAVMTI 128 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N ++ S E F W LD+++R L GE L EF + P ++ SR Sbjct: 129 N-NDPADLSDSHECLSFGHWILDLSARELRNSSGEVTLLTYGEFTLLESLATRPKRVISR 187 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL+ + G E DRTVDV I R+R+ E +P I T G GY F Sbjct: 188 EQLLEYLRGAEGDTFDRTVDVLISRLRQKLEINSRSPRYIRTERGIGYSF 237 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 129/235 (54%), Gaps = 6/235 (2%) Query: 3 TPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +PH +L+++D+ R+ L F + V DG + L + ++LVI+D+ LPG + Sbjct: 2 SPHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDD 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R+ R+ + V ++ LT +E DK++GLE+GADDY+ KPF+ REL R + LL R Sbjct: 62 GFTLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRRN 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + E R + FNGW+LD+ R LI P + L EF + F +P +I Sbjct: 122 QIVQSPGTEARFL---CFNGWKLDLVRRELIDPQKQSEPLSGIEFTLLSLFLRHPNQILD 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 R ++ + RE P +R +DV I R+R+ + + ++ T+ +GY C D+ Sbjct: 179 RDQISEITRRRENNPLERGIDVQISRLRQRLQDSQRL--LLRTLRNQGYMLCCDV 231 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 129/240 (53%), Gaps = 16/240 (6%) Query: 1 MQTPHILIVED-----ELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 M IL+V+D ELV+ N + EGYDV +A D E +++ +++ I+DI Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAR-----EGYDVLKAYDAEEALKVVGNESVDMFIVDI 79 Query: 56 NLPGKNGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTI 112 LPG +G L R+LR N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ Sbjct: 80 MLPGMDGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIA 139 Query: 113 RARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHF 172 R + + R EER K G E+D+ R + ++ L EF + Sbjct: 140 RIKAVFRRIQLSAQEREERPKKIVAK--GLEIDVE-RYEVKVHDQKVSLTPLEFELLRFL 196 Query: 173 CENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 EN GK+ SR LL K+ G + RTVDV IRR+R E P P+ I T+ G+GY+F Sbjct: 197 AENEGKVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_A1VSF0 Two component transcriptional regulator, winged helix family n=4 Tax=Betaproteobacteria RepID=A1VSF0_POLNA Length = 246 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I +++D+ + S G++ FE E+ ++L +L I+D+ LP +G+ + Sbjct: 15 IYLLDDDPDICRLVSSTLREFGFETFECHSAMELRRLLLARVPDLCIVDLGLPDADGMDV 74 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL- 124 REL+ + +M LTGR D+++GLE+GADDY+ KPF PREL R R++L R Sbjct: 75 VRELQARYACGVMVLTGRGYLSDRVMGLELGADDYVVKPFEPRELVARVRSILRRRDKAP 134 Query: 125 -GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++ E RS + +F GW + L P G+++ L E R +L F + P +I R Sbjct: 135 GASMQPEMRS-QLAEFGGWRFRADCNLLSSPGGQEWTLSAGESRMLLQFLQRPNRILDRE 193 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +L R+L DR+VDV + R+R+ ES P P I T++G GY Sbjct: 194 QLCGD---RDLSALDRSVDVRVSRLRRKLESDPQHPTTIRTVYGAGY 237 >UniRef50_Q2W3Z2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=9 Tax=Proteobacteria RepID=Q2W3Z2_MAGSA Length = 278 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 117/234 (50%), Gaps = 6/234 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I +V+DE R L+ + E GY V GA Q + +L I+D+ LP +GL Sbjct: 46 RIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDPPDLCIVDLGLPDMDGLT 105 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L REL E ++ LTGR D++LGLE+GADDYI KPF PREL R +++ R L Sbjct: 106 LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRRDQL 165 Query: 125 GTVSE--ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 R+V F W + SL DG Q L +E + P ++ SR Sbjct: 166 AATGAPVTTRAV----FADWVFESGDLSLTHADGRQETLTAAEAVLLTALLRAPKRVLSR 221 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +L ++ DR +DV I RIRK E+ P +P +I T++G GY F D+ Sbjct: 222 EQLQGAEPEKDDIAFDRAIDVRISRIRKKIEADPKSPRLIKTVYGAGYLFSADV 275 >UniRef50_A3NL94 DNA-binding response regulator n=27 Tax=pseudomallei group RepID=A3NL94_BURP6 Length = 245 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 1/231 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ++P +L+VED+ R L + G V A + + + +V++D+ LP + Sbjct: 6 RSPAVLVVEDDEPLRRVLCNYLSGHGMAVDGVGTAAAAAESVGRREYEMVLLDLGLPDGD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + RE L+ +TGR E D+I+GLE GADDY+ KP++ RE+ R R L R Sbjct: 66 GIDVLLRWRETQRFPLICVTGRSEEADRIMGLEFGADDYVVKPYSLREVLARMRALWRRA 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 T R +Y+F+GW L++N+R L+ D ++ L EF + F +P ++ + Sbjct: 126 EPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSRVVT 185 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 RA+LL+ + DR VDV I R+RK E P PE+I T G GY F Sbjct: 186 RAQLLECTRAFD-DVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYF 235 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+ +DE R L GY+V EA + M + ++ ++V++DIN+PG + Sbjct: 6 EAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL R LR + + ++ L+ VD+I+GLE+GADDY+ KP + REL R + L R Sbjct: 66 GLTALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125 Query: 122 MNLGTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G S +R R + F LD++ L G GE+ + EF + F +N G++ Sbjct: 126 GFAGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVL 185 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +LL++ R + DR++D+ I R+R+ E P PE I T+ G GY F Sbjct: 186 NRDQLLEQAHDRGWEHFDRSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG +G+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 S R F E+D ++R G+ +L +EF ++ N ++ SR Sbjct: 123 KPVKSSVMR------FTHVEIDPDAREARAA-GQLLELTPTEFDLLIALARNHNRVLSRE 175 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L++K+ G + DR VDV + ++R+ E+ +I T G GYRF Sbjct: 176 DLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 135/233 (57%), Gaps = 9/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL---SEYDINLVIMDINLPGKN 61 IL+V+DE R L+ EAEG+ V EA DGA L S ++LV++D+ +PG + Sbjct: 3 RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR A+ ++ +T R EVDK++GL +GADDY+TKPF+PRE+T R +++L R Sbjct: 63 GLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRRR 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + GT ++ R +F+ +D R I DG +L EF + PG++ S Sbjct: 123 RD-GTTGDDPR----LRFDELTVDPIGRE-ITVDGAPVRLTALEFDLLHALVRAPGRVFS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 RA+LL+++ G + +R VDV IR +R P +IAT+ G GY+F G Sbjct: 177 RAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE + +K + E EGY ++ +A E ++ ++L+++D+ + G Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G +RE ++ + FLT R ++ DK+ G +GADDYITKPFNP EL R R L Sbjct: 61 MSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT S+E S ++Y ++ + + LI GE + + +FCE+P + Sbjct: 121 RTYQ----SKETSSNQTYTYDYFTFSPQNAELI-VGGEAVACSAQLLQLLQYFCEHPNVV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S+ ++ +K+ G + TV V IR++R+ E P PE I T+ G GYRF Sbjct: 176 LSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRF 228 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 4/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NGL Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 65 LARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-TM 122 + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R M Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L E S ++ +F+ +E + R+L D ++ L EF + F EN + SR Sbjct: 124 ELSEKVNE-VSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEFSLLKVFIENANQPLSR 181 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++++ G+EL DR++DV I RIRK E P+ P+ + T G GY F Sbjct: 182 DQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_Q5NY91 Response regulator n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY91_AZOSE Length = 236 Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 4/229 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R L+ F A+GY A + + +I + +++ ++DI++PG++GL L Sbjct: 7 ILIVDDEPGVREVLEEYFVAQGYAALCAANAGDAREIAAGSPVDVALVDISMPGEDGLSL 66 Query: 66 ARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE A +A++ LT VD+I+GLE+GADDY++KPF+PREL R +++L RT Sbjct: 67 TRYLREHYARIAIVMLTSAGTVVDRIVGLEMGADDYVSKPFDPRELLARVKSVLRRT--- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + D+ + L + EF + ENP + SR Sbjct: 124 SLAASADLGAARVRVGRCVFDLGAHRLTDEVANDVPMSPLEFDLLKALVENPNRALSRER 183 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L R++ P DR+VD+ + R+RK E P+ P I T+ GY F Sbjct: 184 ILNLSQQRDMDPFDRSVDLRVMRLRKKIEPDPEHPRFIRTVRNAGYVFV 232 >UniRef50_B0SB02 Sensor protein of a two-component response regulator n=7 Tax=Bacteria RepID=B0SB02_LEPBA Length = 225 Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 135/226 (59%), Gaps = 9/226 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++EDE + T++ EAEG+ + A G + Q+L++ DI+L+++DI LP ++G Sbjct: 3 KILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLAD-DISLILLDIGLPDQSGFE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R+ A++ ++FLT R +E+DK+LGLEIGADDYI KPF+PREL R R +L RT N Sbjct: 62 VLKSIRKAASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQN- 120 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + E++S + + + LD + L+ +G+ L E++ M F + PG+I +R E Sbjct: 121 -PLVLEQKSNQKLRIS---LD---KKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREE 173 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 ++ + DR VD I+ IR F+ + I T G+GY Sbjct: 174 IMDSVWTEPEDSFDRAVDTVIKNIRARFKEMDPNFDPIETRRGQGY 219 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKN 61 P IL+V+D+ + L +G+DV GAEM L+ + ++L+++DI LPG++ Sbjct: 14 APRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGED 73 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 74 GLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQ 133 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E + + +D +R DG L E++ + F E P ++ + Sbjct: 134 RM--EPDARGKQDERIRVGDFAIDPQTRQAFLSDG-ALDLTHGEWQLLQFFMERPNRVIN 190 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +++ + G E DR++DV I R+R+ E+ P P + TI GEGY F Sbjct: 191 RDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFA 242 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R L++ G+ V DG L +LVI+D+ LP ++G L Sbjct: 27 ILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGFSL 86 Query: 66 ARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R +R+ QA V ++ LT +E D+++GLE+GADDY+ KPF+PREL R + LL R+ Sbjct: 87 CRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRS- 145 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G + F+ W LD S L DGE+ L ++F + F ++P +I R Sbjct: 146 EFGQAAP---GSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQILDR 202 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 + GRE P DR VD+ + R+R+ T P +I T+ G GY Sbjct: 203 DTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGY 250 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 12/230 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ + Sbjct: 5 VVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR----- 120 RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + G V+ E +++ I R GE +L EF + ++ G++ Sbjct: 125 AQDTGNVTNE-ITIKDIVIYPDAYSIKKR------GEDIELTHREFELFHYLSKHMGQVM 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +R LL+ + G + RTVDVTIRR+R+ E P PE I T G GY Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 135/235 (57%), Gaps = 14/235 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+++D+ R+T+ + E EG+ +A DG + + +LV++D+ LPG Sbjct: 12 MQT--ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGM 69 Query: 61 NGLLLARELREQANVA--LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 +G + ++LR A VA ++ L+ D+E+DK+L LEIGADDY+ KPF RELT R R +L Sbjct: 70 SGTEICKQLR-AARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVL 128 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R S + R V F+ E+D R ++ GE KL +E+ + +F NP + Sbjct: 129 RRA------STDARKV--MHFSEVEVDFERR-VVKRKGEDLKLTPAEYNLLTYFLHNPDR 179 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R +L + G E P+ RTVD + ++R+ E P+TP+ T+HG GYRF Sbjct: 180 PLTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFI 234 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG +G Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL R + Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTP 126 Query: 126 TVSEERRSVESYK---FNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++ + + K F L R + GE L E+ +L+ +N G++ SR Sbjct: 127 PQRDKAQEMTPEKGLHFPELSLYPEGRKAV-VKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRF 232 LL ++ G E RTVD +RR+R+ +P + T+ G GY+F Sbjct: 186 DLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G + Sbjct: 4 ILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWEV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R + Sbjct: 64 CKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS-- 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 +S+ ++ V +E+D+ R+ + G++ L EF + +PG++ +R + Sbjct: 122 DLSKSQKIVAP----PFEMDLVKRT-VKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMI 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +K + G R VDV IR +R+ E P P+ I T+ GY+F ED Sbjct: 177 IKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 9/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++DE R L+S + EG++VFEA +G E + + +L+++DI +P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R ++A ++ LT + + DKI+GLE+GADDYITKPFN RE+ R R +L R+ Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKAQ 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQ-YKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ R E L+ ++ +L+ GEQ L SEF + +PG + SR + Sbjct: 125 PQADVLRIGEIV------LERSACTLMV--GEQTVDLTPSEFEILATLMASPGHVFSRLD 176 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL + +G+ + ++RT+DV IR +R E P P I T++G GYRF Sbjct: 177 LLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D + L E + V A +G EM + L +L+I+DI LPG Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L ++LR Q+ V ++ LT ++ D+I GLEIGADDYITK FNPREL R + LL R Sbjct: 69 DGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRR 128 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + E + KF W D R L DGE L +++ + ++P ++ Sbjct: 129 STFSHSQGE-----RTLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLL 183 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR ++ + + GR+ +P +R +DV I R+RK D I T+ GY D Sbjct: 184 SRNDIAQALWGRDAEPLERGIDVQISRLRKQLRD--DDRNTIMTVRHRGYMLVID 236 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE R + E GY+V EA G + +L+E+ +LV++D+ LPG +GL + Sbjct: 8 VLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLEV 67 Query: 66 ARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +RE + ++ LT + + DKI+GLE+GADDY+ KPFNP EL R + +L R Sbjct: 68 CQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRR--- 124 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E R+ Y + LD + L+ + ++ +L +E+ + F ENPGK R E Sbjct: 125 -DRYEAGRT--GYTYGSLHLDTAANKLL-KNNQEVELTPTEYSLLKMFMENPGKALRREE 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +L + G + +T+DV IRR+R+ E P P I TI G GYR+ Sbjct: 181 MLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ N L + FE EG+ ++ A G+E + + N++++D+ LP +G Sbjct: 8 ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGFT 67 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L ++R NV ++FLT + ++DK+ G G DDYITKPFNP E+ R + L R L Sbjct: 68 LCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMTQL 127 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + S + V Y++ +++D N+ L+ +G + P E + +++FCE+P +I S+ + Sbjct: 128 SS-SYPLKQVYDYEY--FKIDPNTGRLVV-NGTRIDCPAQEMKLLIYFCEHPNQILSKHQ 183 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + K + G E D TV V +RR+R+ E P P I T+ G+GY F Sbjct: 184 IYKDVWG-EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIF 230 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 8/232 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG-- 124 Query: 126 TVSEERRSVESYKFN--GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E + S + N G L + + L +G+ +L +EF+ + +NPG+ +R Sbjct: 125 ---PENNNPNSGQINVAGVVLHVAHQKL-EIEGDSLELSSTEFKLLKALMDNPGRPMTRD 180 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L+ + G++ DR++DV I ++R F+ PD I T+ G GY F + Sbjct: 181 DLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR- 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G + E + ES G LD GP+G PR EF + + GK+ S Sbjct: 123 ---GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPR-EFELLSALMKVAGKVAS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL++ G E +TVD I+R+R + P II T+ G GYRF Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE + +K+ E +G+DV A DG I S +I+L+++D+ LP G + Sbjct: 7 ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +R ++V ++ LT + E +KI G+ +GADDY+TKPF+ REL +R R LL R Sbjct: 67 CNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR-- 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + FN +L+++ + + + G L +EF+ + F NP ++ SR + Sbjct: 125 ---DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREK 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L++K G + DRTVD I+ IR+ ES P I T++G GY+F Sbjct: 182 LVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFI 230 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 140 bits (352), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 9/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP +G + Sbjct: 8 VLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEEI 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT N G Sbjct: 68 CKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNEG 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + NG +L ++ R + E +L +EF+ + F +N GK+ SR E Sbjct: 128 L------KAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L+ K+ G + +DRT+DV I+ +R E + + I T++G GYRF Sbjct: 182 LVVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRFV 228 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 131/235 (55%), Gaps = 9/235 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 65 LARELREQANV--ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR Q+N+ ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R + Sbjct: 82 ICRRLR-QSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 123 N--LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G S++ VE F W LD+++R+L +G+ L EF + ++P + Sbjct: 141 REVPGAPSQQ---VEVVSFGSWALDLSTRTLTR-EGQVVTLTTGEFAVLKALVQHPREPL 196 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +R +L+ GRE +R++DV + R+R+ E P I T+ G GY F D Sbjct: 197 TRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG +GL Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGLEF 84 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R Sbjct: 85 LRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR----- 139 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 S E + ELD +R+ + GE+ L RSEF M F PG++ +R EL Sbjct: 140 --SSEPLPNAVLRAGELELDPTTRTFL-VRGERVDLTRSEFELMSAFLRAPGRVFTRLEL 196 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 L+++ L +RT+DV +R +R E+ P P +I T+ G GYR DL Sbjct: 197 LEQLQEEALG-SERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPDL 246 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +GL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA-- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGP-DGEQYKLPRSEFRAMLHFCENPGKIQSR 182 R + + +L ++ R G +L E+ + +PG + +R Sbjct: 120 ----EAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 ELL + G + +RTVDV +RRIR+ E P P + T G GY Sbjct: 176 QELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 13/230 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G + Sbjct: 5 IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTDV 64 Query: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L R + Sbjct: 65 CKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRNV 124 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N+ V ++ +G D + +L+ DG L +EF F N GK+ SR Sbjct: 125 NI------LPKVAHWQRDGLAADFEAYTLL-VDGVDAHLTPTEFNLFGEFVRNEGKVLSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL G E + + RTVD +RR+RK D E T+ G GYR Sbjct: 178 EQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYADWLE---TVRGIGYRM 224 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 13/230 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ N +K+ E E ++V A M + L +L+++DI LP +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++L R+ + ++FLT R +++D ILGLE+GADDYITKPFNPR L R + +SR Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKA-VSRRYE 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 +G ++R V K E+D+NS S+I DG++ +LPR EF + ENPGK+ +R Sbjct: 121 MG--PKDRNVV---KLGDIEIDMNSYSMIK-DGKKEELPRKEFELLKLMIENPGKVFNRQ 174 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 E+L ++ G + RTVDV I ++R+ S E I T+ G GY+ Sbjct: 175 EILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLV 219 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 12/231 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGLL 64 +L++EDE R+ LK+ E GY V A +G E + +E DI ++++DI LP +G Sbjct: 5 VLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGWS 64 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 65 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S++ E + G +D++SR + DG++ +L EF + +N GK+ SR + Sbjct: 124 ---SQDDGKTE---YQGIVMDVHSRE-VTVDGKKIELTPKEFDLLKLLLDNKGKVVSREK 176 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L ++ G + RTVD I+++R E + +I T+ G GY+ GD Sbjct: 177 CLNEVWGYDFYGDLRTVDTHIKQLR---EKLGEKRNLIKTVWGIGYKLEGD 224 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 130/231 (56%), Gaps = 17/231 (7%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK-N 61 H+L+VED+ + L F E +V ++G + LS +D + LVI+D+NLPG+ + Sbjct: 4 HVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDA---LSAFDASVTLVILDLNLPGRLD 60 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +AR +R ++ V ++ L+ RDNE+D++ GLE+GADDY+TKPF+PREL R R + R Sbjct: 61 GLEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERR- 119 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 V S + FNG + D +R ++ DG L EF + +F +P + Sbjct: 120 -----VEANPSSAAALSFNGVDWDPRARQVL-RDGVPVALTNREFDLLGYFFAHPATALT 173 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R ELL + G E DRTVDV + ++RK I+T+ G GYRF Sbjct: 174 RRELLDGVWGPEWYGDDRTVDVHVLQLRKKLGGAI----AISTVWGVGYRF 220 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILI+EDE + +K+ E EGY V+ +G + ++ + I+LVI+D+ LP +G Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + LR+ ++V + LT + DKI GL IGAD+Y+TKP +PRELT R L R Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR---- 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V ++ +V S+ N +D++ R L+ GE+ L +EF + N GK+ +R Sbjct: 119 --VGCKKENVISFNDNKLIIDVDKR-LVKLSGEEINLTPNEFDILYILASNQGKVFTREA 175 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++++ G E DR++DV I+ +RK E +P+ I T+ GY+F Sbjct: 176 IIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 139 bits (350), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+DE + LK + +V A DG E + + +++++DI LP +GL + Sbjct: 14 VLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLSV 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++RE +NV ++ LT + +++DKILGL+ GADDYITKPFN E+ R + +L R Sbjct: 74 CQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN---S 130 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 +++++ + K ++D +SRSL D E L EF + NPGK+ SR L Sbjct: 131 SITQKEQKSNVIKAGDMKIDCDSRSLYIADKE-INLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LK + G++ RTVDV +RR+R+ E+ P P+ + T G GY F Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 139 bits (350), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 138/232 (59%), Gaps = 5/232 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+++DEL R+ + + + EG+ V A +G L+ + +LV++D+ LP +G Sbjct: 3 KILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGYD 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L +E+ +Q+N+ ++ ++ +D +DK+LGLE+GA+DYITKPF+ REL R + +L R + Sbjct: 63 LCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRS-LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++E + + K EL+IN + ++ +G Q L E+ + + P KI +R Sbjct: 122 ---NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ELL+ + G + R+VD+TI R+RK E +TP+ + TI+G GY+ GD Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGD 230 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE R+ L+ E EG+ V EA DG + +LV++D+ +P G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +++ ++ LT + + DKILGLE+GADDY+TKPFN REL R R +L RT Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQTP 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + R+ + LD R++ +G G L SEF + PG++ SR + Sbjct: 124 LEPDVLRAADIV------LDRTGRTVRVG--GRYVDLTPSEFAILATLMAAPGQVFSRLD 175 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL +++G + +RT+DV IR +R E+ P P+ I T++G GYRF Sbjct: 176 LLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+V+DE R LK+ E + + A+DG E ++E++ +L+I+D+ LP +G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++R+ ++ LT + E DK+ G GADDY+ KPF+ REL R + +L R+ Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS-- 120 Query: 124 LGTVSEERRSVESYKFNGWELDIN-SRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +++ E + + L I+ +R + +G L R+EF ++ NPG++ +R Sbjct: 121 ----NQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L KK+ G E K +DRT+D I+ IRK + ++I T++G GY+F GD Sbjct: 177 EQLAKKVMGLEYKGYDRTIDAHIKNIRKKLNLEKN--QLIITVYGVGYKFEGD 227 >UniRef50_D0XTW5 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XTW5_9CAUL Length = 241 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED++ R + + + V EA D A +I++E I + ++DINLPG++GL Sbjct: 11 PEILLVEDDVELRREMAAYLRDNDHLVHEAGDAASARKIMAERAIQVAVLDINLPGEDGL 70 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R L A++ LT + +D+ILGLE+GADDY+ KP PREL R + +L R Sbjct: 71 SLCRSLAGDGGPAILMLTALGDPIDRILGLELGADDYVVKPIMPRELLARVKAMLRRR-- 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 R Y+F + LD+ +R L P+G L RSE + + ++ R Sbjct: 129 --PPGPAARKTNIYRFADFRLDLAARQLRAPNGAVLLLTRSELAILSALLDRDRQVVPRD 186 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 EL+ + G E + R VD+ I R+R+ + D E+I T G GY Sbjct: 187 ELIALLRGDETEEVGRAVDLHISRLRRKIQDQTDR-ELIRTYRGVGY 232 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I +V+DE+ +KS E GY V+ A +G + + ++ + +L+I+D+ LP G + Sbjct: 12 IFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGEDI 71 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN-L 124 LR+++ V ++ LTG+ +E D + GL+IGADDY+TKPF+PR+L R + LL RT + L Sbjct: 72 CEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTEDEL 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 G E+ S+ + N +L IN + + G L E+ ++ PGKI +R Sbjct: 132 G----EKNSL--FSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTRE 185 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 EL+ G+ K +DRT+D I+ +R E P PE I T+ G GY+F Sbjct: 186 ELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/238 (36%), Positives = 127/238 (53%), Gaps = 16/238 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEY--------DINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG ++ S+ + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 R LL R+ N + E K E R L+ D + L EFR + F Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEE----CRVLL--DDRELTLSPKEFRLLELFMR 198 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ SR +LL+K+ G + +T+DV IR +R+ E+ P P + T+ G GYR Sbjct: 199 HPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_A6TM13 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TM13_ALKMQ Length = 231 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 12/236 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPG 59 MQ IL+VED+ T+ ++ E + V A DGA +LS + DI+ +I+D+ LP Sbjct: 1 MQNKSILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPD 60 Query: 60 KNGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 NGL L + +R + ++ ++ LT D+++D ++ LE+GADDYITKPF+ REL R Sbjct: 61 CNGLELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINV 120 Query: 117 LLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 L R N RS+ +G LDI +R + DG L +EF +L F +P Sbjct: 121 CLRRAQNTIRSHNTSRSI-----SGITLDITTREVKKDDG-LISLTFAEFELLLLFVTHP 174 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 GK+ SR +LL K+ G R +D+ I +RK + + + ++I TI G GYR Sbjct: 175 GKVFSRDDLLTKLWGESFVSETRVIDMHISSLRKKLDDSDN--QLIETIRGVGYRL 228 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ +DE R+ ++ E +GY V A DG + I+LVI+D+ +P Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R+LRE+ +V ++FL+ R E D+ILGLE+G DDY+TKPF+PREL R + +L R Sbjct: 61 DGLNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + + LD + L D ++ L +EFR + E PG++ Sbjct: 121 VAARRGADD---APPALVYERLTLDPAAHEL-RVDDDKIALTVTEFRVLHAILERPGRVL 176 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 +R++L+ + L +RT+D IRRIR P E I T+HG GY+ Sbjct: 177 TRSQLIDRAYEDGLHVSERTIDTHIRRIRAKLR--PYGIEAIETVHGLGYK 225 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL L Sbjct: 7 VLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 67 CRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ--- 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + + K+ G E+ + R ++ E PR EF + H +NP ++ +R EL Sbjct: 124 --AADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPR-EFDLLYHLAQNPQRVFTREEL 180 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L + G + RTVDV IRR+R S P E + T+ G GY+F Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFT 226 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 127/234 (54%), Gaps = 3/234 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE +K + EG+ +V A+ E I+ + ++L+++D+ +PG Sbjct: 1 MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + G ++ E+R N + FLT + +++DK+ G GADDYITKPFNP EL R + L Sbjct: 61 QTGFDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT V+ S +Y++ + + LI DGE + + +FC++P ++ Sbjct: 121 RTYIHKEVAAASVS-SAYEYERFIFHPDFAELIV-DGETVSCSAQLLQLLQYFCDHPNRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S+ ++ +K+ G TV V IR++R+ E P +PE I TI G GY+F Sbjct: 179 LSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFV 232 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 130/235 (55%), Gaps = 8/235 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP Sbjct: 14 VKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKI 73 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 74 DGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G V + + Y+F +DI SR+ + E L EF ++ N G++ Sbjct: 134 QEK-GEVKK-----DEYQFRDLMVDIGSRT-VNRGEEVINLTPKEFDILVLLIRNKGRVF 186 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+ + + G E RT+DV ++ +R+ + +I T G GY F D Sbjct: 187 GREEIFQLVWG-EPCYDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_Q2W9M0 Response regulator n=2 Tax=Alphaproteobacteria RepID=Q2W9M0_MAGSA Length = 250 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ++++ED+ VTR+ + F EG++V EA AE +L + D++L+ +DINLP NG+ Sbjct: 19 PSLIVLEDDPVTRSMIGRYFSNEGFEVREAASAAECRVLLKDRDVDLLFVDINLPDANGI 78 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 ++E+R ++ V ++F+T D+E+D+++GLE+ DDY+TKP N REL R+R LL R Sbjct: 79 SFSQEIRAKSPVGIIFVTQLDSELDRVVGLEVAGDDYVTKPINLRELMARSRALLRRRKL 138 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E R V F + LD+ R L G+Q L R EF + E G+ R Sbjct: 139 DREQVERRNVV---AFGAYILDLTRREL-SKSGQQIVLTRGEFDLLAALVEAEGRPLYRD 194 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L + ++ R + RTVD + R+R+ +I T+ G GYRF Sbjct: 195 YLAEVVSSRSGEGDARTVDSLVSRLRRKLAHPDGGSALIVTVTGIGYRF 243 >UniRef50_A4U4W5 Two-component transcriptional regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4W5_9PROT Length = 233 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R + + GY V +A D A M L+ I+LV++D+NLP +G+ L Sbjct: 7 ILVVDDDETVRALIAASAAKAGYRVEQAEDAAGMRAWLATGQIDLVLLDVNLPDGDGISL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR ++VA++ +T R D+ LG+E GADDY+ KP PREL R +++L R L Sbjct: 67 TRDLRAHSDVAVIMVTERGGPDDRALGIETGADDYLAKPVYPRELLARVKSVLDRRAGLR 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 R +F GW +D+ +R+++ G L +EF + G+IQSR L Sbjct: 127 GAGTANR----LRFAGWCMDLTARAVLDTLGRAADLTPAEFDLLHILVSRAGRIQSRDAL 182 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + + + R++D+ I R+RK +I T G GYRF Sbjct: 183 MVALGSDDAESGPRSIDILISRLRKKLGG---EDGLIETCRGHGYRF 226 >UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7ULL1_RHOBA Length = 239 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P ILI ED+ TR L+ + AEGYDV DG +++ +LV +D+ +P K+G Sbjct: 2 PRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGF 61 Query: 64 LLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR E ++F+T + +E+DK++GLE+GADDYI+KPF E+ R + +L R Sbjct: 62 DVCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRCQ 121 Query: 123 NLGTVSEERRSVESY-KFNGWELDINSRSLIGPDGE-QYKLPRSEFRAMLHFCENPGKIQ 180 + + + ++ FN +L I L GE +L E + ++ + G + Sbjct: 122 PAPSQTPIAKDPTTHITFNMDDLQITPSKLRATRGETTIELTARELQILILLHDADGDVV 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R L ++ G P+ RTVD T+ ++RK E P P II T++G GYR+ Sbjct: 182 HRQTLFQECWGHNRVPNSRTVDQTVSQLRKRIERDPKHPRIIQTVYGLGYRY 233 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 132/233 (56%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + L VS + + G EL+ +++ +I DGE K+ EF+ + +NPG++ Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVI-LDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S E+ +K+ E D TV V +R IR+ E P+ + + G GY+ Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKI 231 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG +GL + Sbjct: 5 ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLTI 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 65 CQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKFS 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V E+ +V + +G +++N+ + +Q L +EF + CEN G + S L Sbjct: 125 GVKEQNENVIVH--SGLVINVNTHECY-LNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 LKKMTGRE-LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ G E + T+ V IR +R+ T D P+ I T+ G GY+ Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKI 229 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 4/232 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G+ Sbjct: 4 ILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVKA 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R LG Sbjct: 64 TKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKELG 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + +++ E Y G L+ +S L+ DG++ L E+ + +F +NP K+ + ++ Sbjct: 124 S---QQKDQEVYMLGGITLN-DSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDI 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +++ E + T+ V IR +R+ E P P I + G GY+ D E Sbjct: 180 YQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYKAESDYE 231 >UniRef50_C7LNV6 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LNV6_DESBD Length = 229 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 115/217 (52%), Gaps = 9/217 (4%) Query: 17 NTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVA 76 T+K+ E +G+ V ATDGA + +LV++D+ LP +G+ + + LR + V Sbjct: 17 TTVKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDSEVP 76 Query: 77 LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVES 136 ++ L+ RD DK+LGLE GADDY+ KPFN EL+ R R +L R T + +R Sbjct: 77 VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136 Query: 137 YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTG-RELK 195 + E I G Q +L R+EF + F +PG+ +R + + G +L Sbjct: 137 LDYRSHEATIQ--------GRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLY 188 Query: 196 PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 H R VDV ++R+RK E P P II T+ G GYRF Sbjct: 189 SHSRAVDVHVQRLRKKIEENPQAPRIILTVAGVGYRF 225 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 133/232 (57%), Gaps = 11/232 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD---INLVIMDINLPGKNG 62 +LIVEDE + L + EG++ TDG L+E+D ++V++D+ LPG +G Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGP---AALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G + S + +D+ R ++ +G+ LP EF + + N G++ +R Sbjct: 119 --GGDDDSEMSDGVLESGPVRMDVE-RHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L+ ++ G + +T+DV ++R+R E+ P P + T+ G GY+ G Sbjct: 176 GQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_Q11E93 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=Q11E93_MESSB Length = 268 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 7/236 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R + G+ V A DG EM LS+ I+L+I+D+NLPG++GL L Sbjct: 34 LLIVDDDDDIRTLVAEQLAEAGFRVELAADGVEMFDHLSKKSIDLIILDVNLPGEDGLSL 93 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +++N+ ++ LT R +D+++GLE+GADDY+ KPF PREL R R +L R G Sbjct: 94 CRRHGQKSNIPVIMLTARGALIDRVIGLEVGADDYLAKPFEPRELLARIRCVLRRA---G 150 Query: 126 TVSE--ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E + R + +F GW LD +R L+ G L +EF + +F EN ++ +R Sbjct: 151 AAVEPVDARRAKRARFRGWTLDFENRCLVDRAGRVVVLSGNEFSLLKYFVENANEVLTRE 210 Query: 184 ELLKKMTGRELKPHD--RTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +LL T ++ R D+ I R+R+ D +IAT+ GY +E Sbjct: 211 QLLTLSTPATANDYNAQRLADLQICRLRQKLHPDTDEAPLIATVRNRGYVLAAAVE 266 >UniRef50_C7PII2 Two component transcriptional regulator, winged helix family n=5 Tax=Sphingobacteriales RepID=C7PII2_CHIPD Length = 235 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE + LK E EGY+V +G A + + +EY +L+I+DI LP +G+ Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEY-FDLIILDIMLPEMDGIA 67 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +R Q N V ++FL+ +++ D++LGL+ G DDY+TKPFN EL +R L+ + Sbjct: 68 VCENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLIVKNKR 127 Query: 124 LGTVSEERRSVES-YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +++ SV + Y F E+D ++ IG DG+ Y+L + E + EN G++ +R Sbjct: 128 I----QDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKETMLLKLLIENKGEVVTR 183 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++L+ + G + P RT+D I RK+FE ++ G GY+F Sbjct: 184 EKILQVVWGYNVYPTTRTIDNFILNFRKYFEEDSRNSRYFHSVRGVGYKF 233 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P ILIV+DE ++ E EG+ ++ A + + + +L I+D+ LP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G L +++R Q+N+ ++FL+ + EVDK+LGL IG DDYITKPF+P+E+ R + L Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + E +V ++ N E ++ +GE+ +L E + F NP +I Sbjct: 121 RVSMMEAPVAETTTVGPFQMNEDETEVYV------NGERLELTAKEVGLLACFLRNPNRI 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S+ L ++ G D TV V IRR+R+ E P P I T+ G GYR Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_P07545 Regulatory protein virG n=21 Tax=cellular organisms RepID=VIRG_AGRT5 Length = 253 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 130/234 (55%), Gaps = 5/234 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+L+++D++ R+ + + V D + +++L +++V++D+NL ++GL Sbjct: 15 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLCSETVDVVVVDLNLGREDGLE 74 Query: 65 LARELREQANVALMFLTG-RDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R L +++V ++ ++G R E DK++ LE+GA D+I KPF RE R R L + Sbjct: 75 IVRSLATKSDVPIIIISGARLEEADKVIALELGATDFIAKPFGTREFLARIRVALRVRPS 134 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + R S+ F W L++ R LI +G + KL EF ++ F E P + SR Sbjct: 135 VARTKDRR----SFSFADWTLNLRRRRLISEEGSEVKLTAGEFNLLVAFLEKPRDVLSRE 190 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +LL RE + +DR++DV I R+R+ E P TP++I T G GY F D++ Sbjct: 191 QLLIASRVREEEVYDRSIDVLILRLRRKLEGDPTTPQLIKTARGAGYFFDADVD 244 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 129/228 (56%), Gaps = 2/228 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP +G+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL RT + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 E + + +F E+D ++ ++ D ++ L E+ +++ + P K+ R +L Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLA-DNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRF 232 LK++ E RTVD ++R+R+ + + +I T+ G GY+F Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKF 231 >UniRef50_C8R030 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R030_9DELT Length = 240 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 120/233 (51%), Gaps = 7/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + T HIL+++D+ ++ EGY V A++ AE Q L + +LVI+D+NLP Sbjct: 5 IDTHHILVIDDDPSLLYLCATVLLKEGYQVDYASNQAEAMQALEQNKYDLVILDLNLPDG 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + + L++Q ++ + +T R +++LG E GA DY+ KPF P ELT R R +L R Sbjct: 65 DGLEIGQRLQQQ-SIPFLVMTIRSQPAERLLGFESGAADYLIKPFLPHELTHRVRRVLPR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 R S W D+ + L+ DG KL EF+ + G++ Sbjct: 124 LEE----PSRFREYTSVPLGRWHFDLKRQVLVAEDGRVTKLTGGEFKLLAALATADGRVI 179 Query: 181 SRAELLKKMTGREL-KPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR E L + RE H RTVDV + R+RK E P P II T+ G GYR Sbjct: 180 SR-EQLSILVARETGGGHQRTVDVLVSRLRKKIEDNPRQPGIILTVTGAGYRL 231 >UniRef50_A4TVF9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TVF9_9PROT Length = 252 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P +++++D+ VTR+ + F EG+ V EA AE +L +L+ +DI+LP NG+ Sbjct: 18 PKLVVLDDDPVTRSMIARYFSDEGFHVREAPSAAECRTLLKASPPDLLFVDIHLPDANGI 77 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 A+E+R + V ++F+T RD+E+D+++GLE DDY+TKP N REL R R+LL R+ Sbjct: 78 TFAQEIRASSQVGIIFVTQRDSEIDRVVGLESAGDDYVTKPINLRELMARTRSLLRRSKQ 137 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR- 182 + RSV F + +D+ R L G+ L R EF + E G+ R Sbjct: 138 -SSGQPSHRSV--ITFGAYVMDMTRRELSSKGGKLIPLTRGEFDLLAALVEANGRPLYRD 194 Query: 183 --AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 AE++ TG + RTVD + R+R+ + +I T+ G GYRF Sbjct: 195 FLAEVVNNRTGGG-EGALRTVDTLVARLRRKLKQAEGDETLIITMPGIGYRF 245 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G + Sbjct: 17 VLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGV 76 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT N Sbjct: 77 CQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT-NKA 135 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 S + FN +D+N R I D E+ +L EF + G+ SRA++ Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQ-IYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 186 LKKMTGRELKPH--DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+++ G + H R VDV I R+R E+ P P++I T G GY F Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P+ILIVED+ ++ E E + DG +I E +L+++D+ LP +GL Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 64 LLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 + +R+Q + ++ LT + E+D+I+GL GADDY+ KPF+PREL R R LL R Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRS---LIGPDGEQYKLPRSEFRAMLHFCENPG 177 + G + + Y+ N +++D++ G E+ +L EF + F PG Sbjct: 132 QLRQG-----QPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPG 186 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ +R +L++K+ G + +R VD IRR+RK E P P I T+ G GY+F Sbjct: 187 RVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 131/240 (54%), Gaps = 19/240 (7%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY----------DINLVIMD 54 +IL++EDE + R T+ + EGY A+DG E ++ Y ++ L+I+D Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 INLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIR 113 + LPG NGL L R +R Q V ++ ++ + +E+D+++GLEIGADDY+ KPF RE+ R Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 114 ARNLLSRT-MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHF 172 R LL RT + T+ R + + R+ + GE+ L E++ + F Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQ-----ECRATL--RGEELNLSPKEYKLLELF 195 Query: 173 CENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ R +LL ++ G + +TVDV IR +R+ E+ P P+ I T+ G GYRF Sbjct: 196 MRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG GL Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E + + + + LD +L DG + L EF ++ +PG+ SRAE Sbjct: 130 QPAEGEVLTDGALRLD---LDARRGTL---DGGELALTGREFDLLVFLLRHPGRAFSRAE 183 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL+++ G H TV V +RR+R+ E P P I T+ G GYR+ Sbjct: 184 LLEQVWGWSFGDHS-TVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 130/230 (56%), Gaps = 1/230 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + HIL+V+D+L R+ +++ G+ V DG + L +++L+I+D+ LP ++G Sbjct: 6 SAHILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + + LR + ++ LT R +EVD+ILGLE+GADDY++KPF+PREL R + +L RT Sbjct: 66 LQICQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTK 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + E + +D + ++ GE +L +++F+ + ++ G+ SR Sbjct: 126 PMNRGRQHADEPEICMKGAFVVDTRRQKILWR-GEPLELSQADFQTLSTLIKHEGQPLSR 184 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+ GR DR++D+ I R+RK +S D + I T+ G GY F Sbjct: 185 ERLMLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMF 234 >UniRef50_Q7CXM1 Two component response regulator n=11 Tax=Alphaproteobacteria RepID=Q7CXM1_AGRT5 Length = 237 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ RN L+ +GY V A D AE + + +L+I+D+ +PG+NGL Sbjct: 17 HLLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVMMPGENGLS 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E +V ++ LT R +I GLE GADDY+ KPF+PREL +R N+L R Sbjct: 77 LTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S + +E F + I R L E +L E ML F G R E Sbjct: 133 -NTSPDTPKIEQIMFGPYSFSIPKREL-RRGAETIRLTDREQEIMLLFALRAGDTIPRHE 190 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L++ E + +RT+DV I R+R+ E P P + T+ G GYR D Sbjct: 191 LVEA----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRLSVD 237 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 8/238 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++ +LIV+DE +KS E EG VFEA DG + ++ + +L+++D+ LP Sbjct: 2 LEEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDM 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +R+++ V ++ LT + +E I GL +GADDYITKPF+PREL R + R Sbjct: 62 TGEEICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR 121 Query: 121 TMNLGTVSEERRSVES-YKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 ++EE + + FN +L I+ + I +GE L +++ ++ + P K Sbjct: 122 ------LNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNK 175 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R EL+ G + +DR VD ++ IR+ E+ P P+ I T+HG GYRF G+ Sbjct: 176 TFTREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEF 233 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 5/231 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ + + +EG+ V + G + + + + +L+I+D+ LPGK+G Sbjct: 10 KILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGFG 69 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R+LR + N ++ LT + + D++LGLEIGADDY+ KP PR L R LL R +L Sbjct: 70 VCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRG-DL 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 SEE+ + G ++ SR + D E L EF + G++Q+R Sbjct: 129 PNQSEEKGEITC---GGLYINKASRKVTLQD-ENVDLTSQEFDLLWLLAGKAGEVQNRDY 184 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 + K + GRE DR+VDV I R+RK + DTP I TI G+GY F D Sbjct: 185 IYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPD 235 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP + Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + G + E ++ + ++ +GE L R+EFR + P ++ S Sbjct: 137 RSAGGPAGEVIDIQDLEIR------PDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYS 190 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL+++ G + R VDV +RR+R E P P I+ T+ G GY+ Sbjct: 191 REQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241 >UniRef50_C3JXL3 Oxidative stress related two component system, transcriptional regulator n=3 Tax=Pseudomonas RepID=C3JXL3_PSEFS Length = 247 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 114/233 (48%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D R L + +DV A D A M Q+L ++V++D+ LP +G L Sbjct: 12 VLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFEL 71 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +L ++N ++ LT RDN D++ GL++GADDY+TKPF PREL R ++L R Sbjct: 72 CNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSRNT 131 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + R +Y+F GW + +L +L +E R + F +P + R L Sbjct: 132 GPAAPRSGARAYRFGGWHFSVTGATLRRDGSPAVQLSTAESRLLQVFLAHPNTLLPRERL 191 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 + + DR +D + R+R+ E++ TI G GY ++ + Sbjct: 192 IDLTAAADSDVSDRAIDRQVSRLRRKLAQGDAAQELLRTIWGGGYLLAAEVNE 244 >UniRef50_C6WIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WIA6_ACTMD Length = 244 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + T +L+VED R ++ +DV A DG +++ ++D +V++D+N+PG Sbjct: 15 VSTSKVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGP 74 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + R LR+ + ++ LT R +EVDK++GL GADDY+TKPF+PREL R +L R Sbjct: 75 DGLEVCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + RR V E+D+++RS + +G + EF + EN +++ Sbjct: 135 P-RIPAARDSRRVVGPV-----EVDLDARS-VEVNGNHVATTKIEFELLAAITENTRQVR 187 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +L ++ G E D VDV + +R+ + + IAT+ G GYR Sbjct: 188 TRDQLRRRAWGEEWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGYRV 239 >UniRef50_Q5HR28 Response regulator saeR n=60 Tax=Staphylococcus RepID=SAER_STAEQ Length = 229 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 11/231 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+DE + ++ FE EGY V T G E ++LS DI+++I+DI +P +G Sbjct: 3 HLLIVDDEKDIVDICQTYFEYEGYQVTTTTCGKEALKLLSS-DIDIMILDIMMPEVSGYD 61 Query: 65 LARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++++ Q ++ ++LT + E D I L +GADDYI KPF+PREL +R NLL+R Sbjct: 62 IVKKMKDMQLDIPFIYLTAKTQEHDTIYALTLGADDYIKKPFSPRELVLRTNNLLARM-- 119 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPR--SEFRAMLHFCENPGKIQS 181 + S +E +F+G L S++L + E +P EF + + G++ S Sbjct: 120 --SKSNHSNKIEQLEFDGLVLKNLSKTLTINNIE---IPMRIKEFELLWYLASREGEVIS 174 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ELL+K+ G + TV+V I RIR+ E P I T+ G GY+F Sbjct: 175 KSELLEKVWGYDYYEDANTVNVHIHRIREKLEKHDFLPYTITTVWGLGYKF 225 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE R L + GY+V A DG Q E D LV++DI LP +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEAD--LVLLDIMLPEVDGLE 59 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R+L+ + + + ++ LT + E+D++LGLE+GADDY+ KPF+ REL R + +L R+ Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 122 MNLGTVSEERRSV-ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 ++ S E + ES G LD +S D P+ E+ + NPG+ Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPK-EYELLKLLVTNPGRAF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR ELL+++ G E RTVDV IR +R + P + I T+ G GYRF Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7Y1_9RHOB Length = 298 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 119/233 (51%), Gaps = 3/233 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LI++D+ + LK FE+ G V + G EM Q L I+ VI+D +PG N Sbjct: 58 HLLIIDDDAKIVSFLKGFFESHGIKVSTGSSGNEMWQALESEKIDFVILDALMPGTNENT 117 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L EL+ Q+NV + +T D E + I+GLE GADDY+ PFNP EL R R + R + Sbjct: 118 LCSELKSQSNVPTVLMTALDGETNIIVGLEAGADDYVVNPFNPCELLARMRAVSRRNNSN 177 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++S+ S + F+ ++ D R L + L R+EF + F P + R Sbjct: 178 FSMSQTNIST-IFSFSSFQFDTRRRELRASENVLVHLSRTEFELLKIFVHRPSEAIDRNT 236 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L + + G EL+ DR++D+ + R+R I T+ G GY F DLE Sbjct: 237 LSELLRGHELEAFDRSIDLHVSRLRSKLGPRVGGGNFIKTVRGTGYMF--DLE 287 >UniRef50_B8IIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIA6_METNO Length = 238 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I++VEDE R ++ G+ V A DG E+ + + + ++VI+DI LP +NGL L Sbjct: 5 IIVVEDEADLRQAVEEYLTEAGFRVIGAADGRELRAAVDQAEPDVVILDIALPAENGLSL 64 Query: 66 ARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR---- 120 AR LR + + A L+F T N +I GLE+GADDY+ KP++ REL R R++L R Sbjct: 65 ARWLRSRGSKAGLIFATAAQNATHRIAGLELGADDYVVKPYDLRELLGRVRSVLRRVIRS 124 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T+ R+V F LD++ R+L G L E ++ F P ++ Sbjct: 125 TVASPAAPAPARTVAVGLFT---LDLDRRTLFDTSGTPVPLTAMEVDLLIAFATRPNRVL 181 Query: 181 SRAELLKKMTG-RELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +L G RE DR++D+ I R+R+ E T P +I T+ GEGY F Sbjct: 182 SRQQLRTMAQGYRESDHSDRSIDIRITRLRRKIE-TGTKPALIQTVRGEGYVFV 234 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 5/232 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP ILIVED+ + G DV TDG + + +LV++D+ LPG + Sbjct: 8 QTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSD 67 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + ++ LT R ++D++LGLE+GADDY+ KP PR L R R LL R+ Sbjct: 68 GLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS 127 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N SEE + +F +D RS + +GE +E+ + N G+I S Sbjct: 128 EN--APSEE--IPQRLEFGELVIDNGGRS-VTLNGELVDFTSAEYDLLWLLASNAGRILS 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R ++ +++ G E DR++DV I RIR P+ P+ I T+ +GY F Sbjct: 183 REDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFV 234 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ + Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTI 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R G Sbjct: 63 CRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATG 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + +E+ F ++ +R ++ L EF + + +NP ++ SR +L Sbjct: 123 KAVIDEDMIETECFT---INKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+++ G + +RTVDV I+R+RK S D P + T+ G GY+F Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLAS-EDKP-FLYTVWGVGYKF 224 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---N 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 T EE + + LD +SR + G KL SEF + P ++ SR EL Sbjct: 124 TPQEESKRITE---GPIILDEDSRE-VSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNEL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L G + + +DRT+D IR +RK + E I +I+G GY+F Sbjct: 180 LDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_C8QI30 Two component transcriptional regulator, winged helix family n=1 Tax=Pantoea sp. At-9b RepID=C8QI30_9ENTR Length = 248 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 6/236 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY-DINLVIMDINLPGKNG 62 P IL+V+D+ L + + VF G + +L ++ +I+LV++D+ LP NG Sbjct: 3 PAILVVDDDRAVCELLHDVLSEHVFTVFSCHQGKDALTLLDKHPEISLVMLDMMLPDTNG 62 Query: 63 LLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 LL+ +++ R++ + ++ LTG +E D ++GLE+GADDYI KPFNPR + RAR L R Sbjct: 63 LLVLQQMQRQRPELLVIMLTGMGSEADMVVGLEMGADDYIAKPFNPRVVVARARAALRRC 122 Query: 122 MNLGT-VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L VS + E ++FNGW LD L P E L + E+ + + K+ Sbjct: 123 GRLAQPVSLQD---EGWQFNGWRLDETRCQLFNPQRETVMLTQGEYALLRALVCHARKVL 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R +LL+ L DRT+DV I R+R+ E P P +I TI G GY F D+ Sbjct: 180 TRDQLLELTHSETLDVFDRTIDVLIMRLRRKIEMNPHQPSLIRTIRGLGYVFSADV 235 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ DG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R + Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + +E+ +D+ R ++ +GE LP EF + + N G++ +R +L Sbjct: 124 DAGADDGVLEAGPVR---MDVE-RHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + ++ G + +T+DV ++R+R E P P + T+ G GY+ G Sbjct: 180 IDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++D+ + +EG+DV DG L + L ++DI +PGKNG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ +++ ++ LT R E+D+ILGLE+GADDY+ KP NPREL R R +L R+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS---- 118 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 +E + +F E SR+ I GE L +E+ + ++ G++ S+ EL Sbjct: 119 DTQQESDDKQETRFGSLEWHPQSRT-ITEHGEPVDLTATEYNILTVLMQHAGEVVSKYEL 177 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + G+ P DRT+DV I +RK + +T I T+ G+ F Sbjct: 178 SQAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLF 224 >UniRef50_C8SKC4 Two component transcriptional regulator, winged helix family n=2 Tax=Mesorhizobium RepID=C8SKC4_9RHIZ Length = 257 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I+IVEDE R + +A GYDV A A ++ +L I+DI +PG++GL Sbjct: 20 RIVIVEDEPDLREAVAEYLDAAGYDVATAETAAAARILIETQPFHLAILDIAMPGEDGLS 79 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + + +++ T +D+I+GLE+GADDYI KP+ RE+ R R++L R Sbjct: 80 LGRWLRSRMPIGIIYATAAGTALDRIVGLELGADDYIVKPYELREVLARVRSVLRRVPQP 139 Query: 125 GTVSEERRSVE--SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + + + S F ++ D++ R + G +G + +SEF + F ++ +R Sbjct: 140 SELLDRKARTDRRSVAFGPFQADLDGRLVTGANGAVIDMAKSEFDVLEVFLTRANRLLTR 199 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 A + + + E R VD+ I R+RK E+ P P+ + T+ GEGY F Sbjct: 200 AAISEAIGFTEDPESSRAVDIRIMRLRKKIETDPANPKFLRTVRGEGYIFS 250 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE +KS EGY+V A +G E + +L+++D +P +G+ + Sbjct: 5 ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RE+R+++ + ++ LT + EVDK++G E G DDY+ KPF+ REL+ R + +L R + Sbjct: 65 LREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR-LEAK 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 T++EE E L + R + G+ L +EF+ + F +NPGK SR EL Sbjct: 124 TINEEIVLTE----GDLTLYPHKREVFL-KGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+ G + ++RT+D I +RK E P PE I T+ G GY+ Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 10/229 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+VEDE L + G+ G + + + +L+++DI LPGKNGL Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R + V + +T E+D++LGLE+GADDYI KPF+PRE+ R + L R + Sbjct: 67 VCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQI 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 G V E R+ G+++D ++ I ++ L +E+R + NPG++ SR++ Sbjct: 127 G-VPEPTRT-------GFQID-EAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQ 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFEST-PDTPEIIATIHGEGYRF 232 LL +E DR +D I+ +RK + P E+I ++G GYRF Sbjct: 178 LLDLCYQQEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRF 226 >UniRef50_Q2W1M5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Magnetospirillum RepID=Q2W1M5_MAGSA Length = 248 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 121/241 (50%), Gaps = 13/241 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I +VEDE R L A G+DV DG E+ + L E+ + ++I+DINLPG+ G + Sbjct: 4 IAVVEDEAPLRADLVEYLSACGHDVIGCGDGKELDRALDEHPVEIIILDINLPGEGGFSI 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 A LR ++V ++ LT R VD+++GLE+GAD Y+ KP REL + R L+R M + Sbjct: 64 AGRLRSHSDVGIIMLTARGLNVDRVVGLEVGADVYMVKPVELRELEAQVRT-LARRMRVS 122 Query: 126 ---TVSEERRSVESYKFNG---------WELDINSRSLIGPDGEQYKLPRSEFRAMLHFC 173 V E R W D + +LI PDG+ KL +E + Sbjct: 123 QPPQVPSEIRPAADAPAPPPAAPAVPTEWIYDQLTWTLIAPDGKSVKLTGNERVFVSLLV 182 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 PG+ SR E+ + + R P DR+VD +RR+R + + P I ++H GY F Sbjct: 183 SRPGEPVSRDEIFRALGKRGWDPADRSVDSMVRRLRAKGDQSFGHPLPIESVHSVGYAFA 242 Query: 234 G 234 Sbjct: 243 A 243 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 132/237 (55%), Gaps = 5/237 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T ILIV+D+ R+ L+ +G +V D A + + L +L+++D+ +PG +G Sbjct: 66 TTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDG 125 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL-SR 120 L R+LR + + ++ LT R ++VD+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 126 LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 185 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + E+R E + F + LD +R+L DG+ L SEF + F + + Sbjct: 186 RATPSAAAPEQR--EPFAFGRFVLDFQARTL-SIDGKPATLSSSEFALLKIFVNHALRTL 242 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R LL+ + G E DR +DV + R+R+ E+ P TP I T+ G GY F D E Sbjct: 243 TRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 299 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCEN 175 N+ + + + W N +SL I G+ +L R E+R + ++ Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATW--TCNPQSLQIQYHGQILQLTRYEYRLLFLLIQH 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGY 230 P K+ SR +L+ + +RTVD I+ +R+ + TPD + I T G GY Sbjct: 180 PEKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDD-DPIRTHRGFGY 234 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 131/238 (55%), Gaps = 8/238 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIVED++ N +K EGYD+ +A G E + + ++VIMDI +P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ R +RE++ V ++ L+ + + DKI+GL +GADDYI KPF+ EL R + + R Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 121 TMNLGTVSEERRSVES---YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + E +S++ Y++ + D+N+ + + G++ L E + + F ENP Sbjct: 121 AIYYN----ETKSIKENKIYEYGDVKFDMNNYT-VTKGGKELTLTAKEMKILKLFFENPN 175 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ ++ ++ + G E TV V +RR+R E P+ P++I T+ G GY+ GD Sbjct: 176 RVFTKVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 7/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 -TMNLGTVSEERRSVES----YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 T L V + + VES + G EL+ N++ + DG+ K EF+ + N Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKE-VNIDGKYIKTTPIEFKILSLLMRN 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 G++ S E+ +++ D TV V +R IR+ E P P+ + + G GY+ Sbjct: 180 AGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKI 235 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + +E+ + LD R L+ GE+ ++ EF+ + E+P + Sbjct: 121 WKQMKSHAEQT------AISALVLDKEKR-LVYSFGEEVEVTSKEFQVLSLLSEHPNRAF 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ELL + G + DR VD IRRIRK + P + T+ G GYR Sbjct: 174 SRDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 130/240 (54%), Gaps = 19/240 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HI +VED+ +N + + + EGY + + ++ ++ I+DI LPG +G Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +++R +++V ++ ++ +D E+DKILGLE+G DDY+TKPF+PREL R + L R+ Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 123 N--LGTVSEERRSVES---YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + + E+R V+ YK N R + +GE+++ E+ +L ENP Sbjct: 122 SHRQDEIEEDRVKVDQLLVYK--------NERRVFF-EGEEFETTTKEYDMLLLLAENPN 172 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + SR ELL K+ G + DR VD I+RIRK + P + T+ G GYR D E Sbjct: 173 RAFSREELLMKIWGNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKDEE 227 >UniRef50_Q2BM87 DNA-binding response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BM87_9GAMM Length = 236 Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 7/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + TP I ++EDE + S + Y G + L++ ++ I+D+NLP Sbjct: 5 ISTPLIYVIEDERDLGELICSTLDGFRYRTEYCPTGTAALEQLAKQAPDICIVDLNLPDM 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L ++ EQ + ++ ++GRD D++LGLE GADDYITKPF PREL R ++L R Sbjct: 65 DGMQLVKQFEEQ-EIGVIIVSGRDGLTDRVLGLEFGADDYITKPFEPRELVARVQSLTRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 SE ++ +F W S L + L R+E +L ++P +I Sbjct: 124 LRK--RQSEVVDQPKTARFGLWSFQPESLCLRHEEKGDDSLSRAEGDMLLALLKHPYQIL 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR +LL G P+DR++DV + R+RK E P PE+I T++G GY F ++ Sbjct: 182 SRDQLL----GENCVPYDRSIDVRMSRLRKKIEEDPQQPELIKTVYGAGYMFTSEV 233 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G L Sbjct: 4 ILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWEL 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R + Sbjct: 64 CGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQVA 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++E S E +F ++ +R ++ + E +L EF + ++P ++ SR++L Sbjct: 124 IQAKESLS-EVIEFPDLKIYPKTRCVLVCENE-VELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+ + + TV V + R+R+ E I T+ G GYRF Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRF 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP +G+ + Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63 Query: 66 ARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +++RE + +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + RT Sbjct: 64 TKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQ- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGE-QYKLPRSEFRAMLHFCENPGKIQSRA 183 E+ S +L ++ +I G+ + L EF +++F K+QSR Sbjct: 123 --PIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL + G + R VD+ + +R+ E P P + T+ G GY+ Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VED+ + A G+ V A DG + +L+++D LPG +G + Sbjct: 42 VLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSEV 101 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R + +V ++ LT + ++I GLE GADDYI+KPF+PREL +R +++L R ++G Sbjct: 102 CRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR--SIG 159 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++ E ++ + LD ++ S++ GE+ L EF + ++PG+ SR +L Sbjct: 160 DLTPE----ATFTLGEFTLDASAHSIVRA-GEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LK + G E TV VT+RR+R+ E+ P P I+AT+ G GYR Sbjct: 215 LKSVWGWEFGDLS-TVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 125/237 (52%), Gaps = 13/237 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + +L+VEDE + L+ + G+DV +L + L+++D LPGKNG Sbjct: 7 SSRVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNG 66 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L R LR E + ++ LT R E D++ GLE GADDY+ KPF+PREL R LL Sbjct: 67 LAWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLR 126 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ GT + + G ++D+ + + D Q L +EFR + F NP ++ Sbjct: 127 RSYG-GTAAGR------VRLGGLQVDLRAHRVYA-DEVQVHLGPTEFRLLRLFVTNPERV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR LL ++ GR+ +RTVDV IRR+R+ E +II T+ GEGYR C L Sbjct: 179 FSRDMLLDQIWGRQSFVEERTVDVHIRRLRRGLEHH-GYAQIIETVRGEGYR-CSAL 233 >UniRef50_Q2P1E0 VirG-like two component response regulator n=13 Tax=Proteobacteria RepID=Q2P1E0_XANOM Length = 259 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 129/233 (55%), Gaps = 2/233 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ + + + G + F AT+ +E+ + L + +++++D+ L ++GL L Sbjct: 25 VLVVDDDQAMAHVVMGHIRSHGMEAFVATNSSELAEALRRREPDILLLDLMLKHEDGLDL 84 Query: 66 ARELREQANVALMFLTG-RDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LR+++++ ++ ++G R +E+D+++GLE+GADDY+ KPF ELT R R +L R + Sbjct: 85 LRALRKESDIPVIIMSGHRRDEIDRVVGLELGADDYLPKPFGLHELTARIRAVLRRHITS 144 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + +F+ WE D+ +R++ L + E+ + F + PG+ SR Sbjct: 145 KMAAARGAGEGRVRFDAWEFDLQARTVGRTGAPAIALTKGEYALLRAFVDAPGRPLSREH 204 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L++ E DR++DV I R+R+ E P P +I T G GY F +E Sbjct: 205 LMRATRLHE-DVFDRSIDVQILRLRRKLEQDPREPTLIVTQRGAGYVFTPSVE 256 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P +GL Sbjct: 8 ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLTA 67 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT + Sbjct: 68 CMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF- 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 S+E+ + ++ +DI R+ + G+ L R EF + F N K+ SR +L Sbjct: 127 --SKEQEA--TFDVGILSIDIEGRA-VSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQL 181 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L ++ G E + RTVD I+ +R + I T+ G GY+F Sbjct: 182 LDQIWGTEYHGNLRTVDTHIKTLRLKL---GEAGGYIQTVWGIGYKF 225 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 + IVEDE + LK+ E GY V A +G E + E + + VI+D+ LP G + Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R ++V +M L+ + +E D+I G+ IGADDY+TKPF+PRE+ +R +L RT L Sbjct: 65 CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124 Query: 126 TVSEERRSVESYKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +E + FN E+ I+ + + + E L EF + ++PG++ SRA+ Sbjct: 125 -------KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRAD 177 Query: 185 LLKKMTGRE-LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL+K+ + ++R++DV I+ +RK E P+ I T+ G GY+F G Sbjct: 178 LLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 128/230 (55%), Gaps = 4/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ R L+ G+ V A G M L++ + VI+D+ LPG++GL L Sbjct: 130 ILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGEDGLAL 189 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNP--RELTIRARNLLSRTMN 123 ARELR +++ ++ L+ R E+D+++GLE+GADDY+ KPF+P +RA ++ + Sbjct: 190 ARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQPTS 249 Query: 124 LGTVSEERRSVE-SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G + + E + +F + LD + L+ DG+ L +EF + +P ++ SR Sbjct: 250 AGDLPPASKPAEQAVRFGPFLLDAAAFRLLR-DGQDVGLSVAEFTLLQAMVAHPNRVLSR 308 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +L+ + G E DR++DV + R+R+ E P P + TI G+GY F Sbjct: 309 DQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLF 358 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 129/231 (55%), Gaps = 13/231 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+++VEDE+ + ++ EA G++V DG E ++ + NL+I+D+ +P +GL Sbjct: 3 HVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++REQ+++ ++ +T R E+D++LGL +GADDY+ KPF+P+EL R + +L R Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL--- 119 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 R E + + + +D ++ I + L +EFR + F E+ G++ SRA+ Sbjct: 120 ------DRKAEPEQNDLFRID-KAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQ 172 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT---PEIIATIHGEGYRF 232 LL + DR +D I+ +R+ DT E + ++G GYRF Sbjct: 173 LLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRF 223 >UniRef50_Q1NBG5 Two component transcriptional regulator, winged helix family protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NBG5_9SPHN Length = 235 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +P ILI E R+ + E G+ V A ++ L+ + V++D L G Sbjct: 1 MNSPLILIAETRQDLRSATRDHLEHSGFRVLPALTANDIFSALTTTPVRAVVLDSALRGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L R++RE+++V ++ + +EVD+++GLE+GADDY+ KP++ REL R R +L R Sbjct: 61 DGLDLCRDVRERSHVPIILVGDNSSEVDRVVGLELGADDYMAKPYSARELAARLRAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G + R F+GW +D R + P G+ L +EF + F ++P + Sbjct: 121 G---GDRTSGLRRHNQATFDGWMIDFARREVTEPGGQPVMLTAAEFALLSIFLDHPRTVV 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R L++ R+ DR+VDV + R+R+ P I T+ G GY F +E Sbjct: 178 ARGRLMELAGVRDGASSDRSVDVLVSRLRRKL-GIGGRPAPIITVRGVGYMFAASVE 233 >UniRef50_B5Y819 DNA-binding response regulator YycF n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y819_COPPD Length = 236 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 135/241 (56%), Gaps = 17/241 (7%) Query: 2 QTPHILIVEDELVTRNTLKSI---FEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP 58 Q+ IL+VED+ RN L +I EG+ V +A +G E + + NLV++D+ LP Sbjct: 4 QSETILVVEDD---RNILDAIERKLTKEGFKVIKAMNGKEALEKFYAHQPNLVLLDLMLP 60 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 +G + +E+R Q + ++ +T R+ EVD+ILGLE+GADDYITKPF+ EL R R +L Sbjct: 61 LVDGKEILKEIRSQYDTPIIVVTAREEEVDRILGLELGADDYITKPFSLPELVARVRAVL 120 Query: 119 SRTMNLGTVSEERRSVE---SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 RT + ERR V + G EL +N+RS Y LP+ +F + Sbjct: 121 RRTYGMKKTVGERRLVCDDIALDLRGHELRVNNRS--------YLLPKKQFELLRILMSR 172 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 G++ +R LL ++ G + RT+DV I+ +R E P+ P+ I T+ G GY+F GD Sbjct: 173 AGEVLTREYLLNEIWGADYYGDKRTLDVHIKWLRDKIEPNPNEPKYILTVRGVGYKFNGD 232 Query: 236 L 236 + Sbjct: 233 V 233 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIVED+ L + GY DG E + L E +L+++DINLP + Sbjct: 1 MSQHKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSE 60 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG+ + LR+ N V ++ L+ RD+E DK+ L +GADDYITKPF EL R +L Sbjct: 61 NGIGVLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +GT +E ++ ++F E+++ +RS++ GE KL EF + +NP ++ Sbjct: 121 R---VGT--QEISAL--HRFGSVEVELETRSVV-RQGEAIKLTHLEFELLAFLVKNPSRV 172 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ELL+++ ++ RTVD + ++R ES P+ P T+ G GYRF Sbjct: 173 FSREELLRQV-WKQSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >UniRef50_Q1GKH2 Two component transcriptional regulator, winged helix family n=28 Tax=Rhodobacterales RepID=Q1GKH2_SILST Length = 239 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 4/234 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +P + I++DE R L E GY + + L ++ ++D++LP +G Sbjct: 7 SPLVTILDDEPEIRQLLTETLEDAGYRTQSFSRARDFEAALKRVTPDVCLVDLSLPDTDG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L L + +++ ++GR D++ GLE+GADDYITKPF+P E+ R R L T Sbjct: 67 LALVHRLALEQGASVIIISGRAQVQDRVTGLELGADDYITKPFDPAEVVARIRVRLRDTS 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G R+ +F+GW + +L +GE+ +E + F E+P ++ SR Sbjct: 127 RGGQPDTGDRA----EFSGWTAHFDRYALEDENGEETAFSHAEGEVLRLFLESPKRLISR 182 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 A++++++ G DR +DV I R+R P P +I TI+G GY F GD+ Sbjct: 183 AQMMERLGGGAGDSFDRAMDVRISRLRTKLREDPKNPRLIKTIYGAGYIFLGDV 236 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R+ + E G +G E I+L+I+DI +P +G Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R++R+ + + ++FL+ RD E+DK+LGLEIG DDY+TKPF+PREL R + +L R+ Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N E RR++ + LD R+++ D + EF + P + SR Sbjct: 122 NEAE-PERRRAI--FVAGELSLDRQGRTVMFGD-SAISMTVLEFAILDALLSRPDMVFSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L++ G DRT+D IR IR F + IIAT+HG G++ Sbjct: 178 ERLMEAAYGAGTYVADRTIDSHIRNIRAKFLAAGGQG-IIATVHGIGFKL 226 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 127/242 (52%), Gaps = 10/242 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE L + GY+V ATDGA+ + +++D+ LP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 NGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + ++LR E+ ++ +T +++E DK+ GLE+GADDYITKPF+PRE+ R + ++ Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 120 RT------MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFC 173 RT + R+V ++D N + + +G+ L EF +++F Sbjct: 121 RTTPDEPVTPPAPMPPANRAV--MLVGDLQIDQN-KYRVARNGKNISLTPKEFELLVYFV 177 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 E G++ SR +L + G + R VD+ I +R+ E+ P P +I T+ G GY F Sbjct: 178 EREGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 Query: 234 GD 235 GD Sbjct: 238 GD 239 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 10/235 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R N V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + R + ++ + +E +D +S + D E LP EF + +NP Sbjct: 121 IRRDQDF---KDKDKILEKGDLT---VDAHSYKVFVKDNE-VDLPPKEFELLYLLIKNPE 173 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ +R E+L+K+ G RTVD ++RIRK E +I T+ G GY+F Sbjct: 174 RVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 125/236 (52%), Gaps = 15/236 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVEDE + L GY +G E+ + +L+++D+ LPGK+GL Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT--- 121 + RE++E +N+A++ +T R +E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 122 ----MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 +N + + + + ++ IN + +L EF + PG Sbjct: 123 LTTGINTNIAKQSQTTTVELNTDNYQATINQHPV--------ELTAIEFNLLNILASAPG 174 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +I SR++L+ ++ +RT+D I+++RK + E++ +++ GY+ Sbjct: 175 RIYSRSQLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ R L EGY + A DG + + +LVI+D+ LPG +G L Sbjct: 32 ILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFEL 91 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R +++V ++ LT R +E DK+ GLE GADDY++KPF REL R + LL R+ Sbjct: 92 CRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQ--- 148 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 T + + + K E+ I R L+ +G EF +N ++ SR +L Sbjct: 149 TQNSQTETTGGLKIGDLEIFIE-RHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQL 207 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+K+ G + RTVDV I +R+ E+ P +P + T+ G GY+F Sbjct: 208 LEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_B8FS97 Two component transcriptional regulator, winged helix family n=6 Tax=Firmicutes RepID=B8FS97_DESHD Length = 239 Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 4/233 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE R L I EG+ V A + ++ +VI+D++LP +G Sbjct: 9 LLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSLPDGDGFS 68 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L E R + V ++FL+ RD + +++LGL +GADDYITKPF PREL +R + +L+RT Sbjct: 69 LMSEFRSISAVPVLFLSARDEDENRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTYFP 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T+ + ++ + ++ +D+NS + P G Q L E+ + EN G I + Sbjct: 129 PTLRQSKKPL--FRLGEAVVDLNSALVTRPQG-QVTLTAKEYILLAKLYENRGSIVTGDS 185 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L + + G +L ++ T+ V IRR+R+ E P +P + T+ G GY+ G +E Sbjct: 186 LCRAVWGDDLYGYENTLMVHIRRLREKIEPEPSSPRYLLTVRGLGYKLTGVVE 238 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 122/245 (49%), Gaps = 27/245 (11%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ ED+ R L I E EGY V A DG E +I E +L ++DI +PG Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + RELR + +A++ LT + E+DK++GLE+GADDYITKPF EL R +L Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGP------------DGEQYKLPRSEFR 167 R+ RR+ G ++ S IGP ++L E + Sbjct: 121 RS---------RRTAP-----GAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMK 166 Query: 168 AMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHG 227 + F +P + R LL G + + RT+D I ++RK E P P++I T+HG Sbjct: 167 LLEAFYRHPDEALPRNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHG 226 Query: 228 EGYRF 232 GYR+ Sbjct: 227 IGYRY 231 >UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN2_9GAMM Length = 225 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 11/232 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T +L+++D+ L +F+ E ++ DG + D L+++D+ LPG +G Sbjct: 2 THSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGIDG 61 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L + LR+Q + A++ LT R ++ D+++GLE+GADDY+ KPFNPREL R R LL RT Sbjct: 62 MQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N T+ + E +G+ LD S++ + D + + +EF + + G++ S Sbjct: 122 AN--TMMQN----EVLTVSGFTLD-PSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVS 174 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +L GR++ P DR++DV I IRK P PE I T+ G GYR Sbjct: 175 KDQLSVAALGRKMGPFDRSLDVHISNIRKKL---PANPERIQTVRGRGYRLV 223 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL V+D+ L+ EG++V A+ G E Q + +LVI+D+ +PG +G Sbjct: 5 ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFET 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++L+ Q V ++ L+ R EVD+++G +G DDY TKPF+P EL +R + +L R Sbjct: 65 YQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR----- 119 Query: 126 TVSEERRSVESY-KFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + E + ++E+ K+ LD R+ + + + +L +F + NP ++ ++A Sbjct: 120 -LGEPKVNLENMLKYGNLTLDYTKRT-VAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL K+ D TV V IRR+R+ E+ P PE I T+ G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG +G Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 65 LARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL RT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + ++ +G +LD N+R Q L EF + + +PG++ +R Sbjct: 123 ASRLRQQIGDAAPTS-SGLQLD-NARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL ++ G + RTVDV IRR+R +I T G GYRF Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 4/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGL 63 IL+VED++ + Y+V G A + ILS +LVI+D+NLPGK+G Sbjct: 31 RILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRP-DLVILDVNLPGKDGF 89 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R+ R+ + ++ +T RD D++LGLEIGADDY+ KP PR L R + L R Sbjct: 90 EICRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRAP- 148 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 V+E E Y F + +D RS++ PDG L +EF + G++ SR Sbjct: 149 -ARVAEGAPQPERYTFGKFSIDRTDRSVVLPDGSTPDLTSAEFDLLWVLVCRAGEVVSRD 207 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L+ ++ G E DRT+D I ++R+ P+ I TI +GY+F Sbjct: 208 DLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFS 257 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAE-MHQILSEYDINLVIMDINLPGKNGLL 64 ILI+EDE+ R LK E EGY V A DG E + ++++E +LV++D+ +P +G Sbjct: 4 ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKP-DLVLLDVMMPKLDGFA 62 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ELR AN V ++ LT + D++ GL+ GADDY+ KPF+ EL R R +L R Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH-- 120 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQ-YKLPRSEFRAMLHFCENPGKIQSR 182 E+R+V + +F E+D+ ++ G + E+ + E PG+ SR Sbjct: 121 ----QREKRAVATLRFGEVEIDMVKQT--ARRGRKDLHFTAKEYAMLRLLSEAPGEPISR 174 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L + G P RTVD I +R ES P+ P I T+HG GYR G Sbjct: 175 ERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_B5ZPT0 Two component transcriptional regulator, winged helix family n=8 Tax=Rhizobium RepID=B5ZPT0_RHILW Length = 246 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 3/232 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + + EAEG+ A E IL+ ++LV++D NLP + Sbjct: 4 QKVRILIVEDDPDMAELISDLVEAEGWIPTCAGSAEEATDILAREQMHLVLVDHNLPRTS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G A++LR + N+ ++ +T + D++LGLE ADDY+ KPF P ELT R + +L RT Sbjct: 64 GRAFAQKLRSEINIGIVMVTAAGSAADRVLGLETAADDYVVKPFEPIELTARIKAVLRRT 123 Query: 122 M-NLGTVSEERRSVE--SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 + +L E R E S W +D+ R + L +EF + + P + Sbjct: 124 VPSLKQEKESEREHERPSLLLGDWAIDLMGRQAVCLADRSKTLTTAEFALLEILAQTPNQ 183 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 SRA++L ++ + DR VDV + R+R+ E PD P I T G+GY Sbjct: 184 PVSRAQILDRLGSESDRYIDRNVDVLVLRLRRKIERNPDLPRHIKTRRGKGY 235 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 130/232 (56%), Gaps = 5/232 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + E EGY V A DG + Q+ + ++VIMDI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +++++ + +V ++ L+ +D+ VDKI+G ++G DDY TKPF+P EL +R + +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + E++ + + + ++ ++R L+ G++ L EF + +P +I Sbjct: 121 SKAV----PEKKGKDVLDYQNFYIEYSTR-LVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL+++ + + TV V IRR+R+ E PE+I T+ G GY+F Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKF 227 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 119/246 (48%), Gaps = 29/246 (11%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIVED+ ++ EA G+D DG E+ +L + +L+++D+ LPGK+G Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+REQ ++ ++ +T R VDKI GL +GADDYI KPF+P EL R T NL Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARV------TANL 119 Query: 125 GTVSEERRSVESYK---------------FNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 R + K N W++ R + K P EF + Sbjct: 120 RQYDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREI--------KFPNREFELL 171 Query: 170 LHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEG 229 NP + SR +L +K+ G + TV V I RIR+ E P+I+ T+ G G Sbjct: 172 KFLAMNPNIVFSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAG 231 Query: 230 YRFCGD 235 YRF D Sbjct: 232 YRFNKD 237 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP ILIV+D+ RN + F + Y + A DG + +++ LVI+D NLP NG Sbjct: 8 TPKILIVDDDFGVRNLVHR-FLSRKYQIEAAADGKTALSMFEQFNPALVILDWNLPDVNG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E++ + NV ++ LT R +E DKI L GADD++TKPF+ E+ +R LL R Sbjct: 67 YSLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIR 126 Query: 123 NLGTVSEERRSVESYKFN--GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + +R + N G E+ +N + L+G L EF + +P + Sbjct: 127 YINPSPTQRIIFKQLVINPEGREVILNDK-LLG-------LTALEFNILHFLASHPNQAW 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +L++K+ G + R VDV I ++RK E P PE I T+ G GY+F Sbjct: 179 SRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKF 230 >UniRef50_A0Z5Z4 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5Z4_9GAMM Length = 239 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 134/238 (56%), Gaps = 10/238 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 +LIVED+ + + L+ +F G FEA+ A +H + +Y LV++D+ LP +G Sbjct: 4 VLIVEDDEILGDELRDVFTQWG---FEASLVASVHDFWANVEDYQPQLVVVDLTLPDGSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R ++++ ++ ++GR +E+++++ +E GADDY+ KPF+ RE+ R R L+ RT Sbjct: 61 VDIIRDVRSKSDIGIIVMSGRSDEIERVVCIETGADDYVVKPFSSREMVARIRQLMYRTG 120 Query: 123 NLG-TVSEERRSVES--YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + T S ++E+ +KFN + D ++ +L P G++ L EF + + ++ Sbjct: 121 GVAYTPSAAVNTLETGRFKFNDYVFDTSAMALTDPGGDEVSLTTLEFSVLKTMVVHARQV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR LL+ + DR +D + RIRK S P + + T+ G GY F ++E Sbjct: 181 LSREFLLESVHATNWAGSDRNIDNLVSRIRKKI-SAPGSAPPVRTVRGVGYMFALEVE 237 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD---INLVIMDINLPGK 60 P+I +VED+ + S + + V G +L EY +LVI+D+ LPG Sbjct: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARG---DHVLDEYRRQRPDLVILDLMLPGI 104 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R LR+++ + ++ LT RD+ D++LGLE+GADDY+TKP PR L R R LL Sbjct: 105 DGLQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLR 164 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ +V+E R + G +D+ R+ + GE+ +L E+ ++ N G++ Sbjct: 165 RS----SVNEPRLDNDLILIGGLRIDLAERT-VSWRGEEVELSSGEYNLLVVLARNAGEV 219 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +L+++ G E DR+VDV I ++R+ F+ I T+ G+GY F Sbjct: 220 MNRDRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_A8HVW3 Response regulator receiver n=2 Tax=Alphaproteobacteria RepID=A8HVW3_AZOC5 Length = 226 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 118/228 (51%), Gaps = 17/228 (7%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVED + + + E G A GAE+ L +++++D+NLP +G+ L Sbjct: 5 VLIVEDAPESLEMISTFLEENGMRTVRAASGAELKARLQSVQPDIILLDVNLPDADGIAL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 AR+LR A+ L+F+T RD++ D + GL+ G DDY+TKP NPR L R R++L R Sbjct: 65 ARQLRLGASFGLIFVTARDSDEDVLAGLDAGGDDYVTKPINPRTLLARIRSVLRRA---- 120 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 R V F+GW LD+ R L P G+ +L EF ++ P + SR L Sbjct: 121 -----REPV--ITFDGWILDVVRRELFRPTGQLVELTAGEFNILVALASRPQEPLSRDFL 173 Query: 186 LKKMTG---RELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 L ++ RE+ H TVD I R+RK P IAT+ G GY Sbjct: 174 LDVISNRDPREISSH--TVDNLIARLRKKMTHEGLLPP-IATVRGVGY 218 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 1/229 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ +N K+ EG+ + A GAE Q+ + +L+I+D+ LP +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R + V ++FL+GR++++D+I+G IG DDYITKPF+P L + ++ + R L Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + + F +D + + +G+ L EF+ + EN G++ S L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCE-VTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + G++ RTV V I +RK E P PE I T+ G GY+F G Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE + E Y V +G + +I+ + ++ VIMD+ LP +G+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 66 ARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +++R+ + ++ LT + ++VDKILGLE+GADDYITKPF+P+EL R + +L RT Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++E ++++ +D R ++ + E+ +L +EF+ + + +N ++ SR + Sbjct: 125 INLAEIDPTLQA---ENIAIDF-KRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQ 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L+K+ G E R VD+ I +R E+ P P++I TI G GY F Sbjct: 181 ILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6_BACP2 Length = 240 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 129/234 (55%), Gaps = 5/234 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+T ILI +DE ++ + + EG+ +++A E ++ DI+L+++D+ +PG Sbjct: 1 METAKILIADDEEAIVKMVERVLKKEGFKHIYKAYHADEALDVVKNEDIHLLLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 K+G + E+R+ + +LT R ++VDK+ G GADDYITKPFNP EL R + L+ Sbjct: 61 KSGFDVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLN 120 Query: 120 RT-MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 RT ++L +E +S Y++ + +S L GE + +FC++P Sbjct: 121 RTYISLKEDQDEAQS--PYEYAHFSYHPHSAEL-KVRGEVTACSAQLLSLLKYFCDHPNV 177 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + S+ ++ +K+ G + TV V IR++R+ E P PE I TI G GY+F Sbjct: 178 VLSKDQIYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 1/227 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVED+L K E ++V TDG + E +L+I+D+ LP +G + Sbjct: 4 ILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGFDI 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R + + +V ++ ++ + E+DKI GL +GADDYITKPF+P EL R ++ + L Sbjct: 64 LRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYERLK 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++ + G E++ +SR +I D E L + EF +LH + P ++ + EL Sbjct: 124 NKFSDKLNNNVISIRGLEINKDSRQVIINDKE-VNLAQKEFDLLLHMAQYPNRVFGKDEL 182 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + G + TV V IRRIR+ E P P+ I T+ G GYR Sbjct: 183 FESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 12/231 (5%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG +G+ L Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 66 ARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 AR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + +L RT Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++G E + G LD S + D P +E+R + F + ++ +R Sbjct: 126 SMGI-------SEPIQVEGLCLDPISHRVTISDMPVQMGP-TEYRLLEFFLTHQERVYTR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL + G + +RTVDV IRR+RK S I T+ G GYRF Sbjct: 178 NQLLDHVWGGNVYVEERTVDVHIRRLRKAL-SLEGHDRFIQTVRGAGYRFS 227 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 5/229 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 4 KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L R Sbjct: 64 VLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E R + E+D N+ + + DGE L +EF+ + PG+ +RA+ Sbjct: 123 ---REGGRRDGVLRLGPLEMDTNAYT-VTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQ 178 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + + ++ R +DV I R+R E P PEII T+ GYR Sbjct: 179 ISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYRAA 227 >UniRef50_Q0TNL1 DNA-binding response regulator n=8 Tax=Clostridium perfringens RepID=Q0TNL1_CLOP1 Length = 232 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI+EDE +N L+ F EG+ V G + I E++ +LVI+D+ LP +G Sbjct: 4 KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + REL + N ++ LT RD+ VDK+LGLE+GADDYITKPF+ RE R + L R Sbjct: 64 VCREL-NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDKF 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S + + + ++ SR + + E+ +L E +L+F +NP SR + Sbjct: 123 LKESNKSTVKDEFIIGSIKIKRQSRK-VYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L + G E RTVDV +RR+R+ + EII TI G GY F G+ Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFKGE 228 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVED+ + A G++V A DG + + +L+++DI LPG +G + Sbjct: 4 ILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFAV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN-L 124 RELR V ++ +T R EVD + GL +GADDYI KPFNP EL R R+ ++R L Sbjct: 64 CRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYERIL 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +V E+ V+S E+ +++ + D ++ R EF + E+P + SR Sbjct: 124 ASVKPEQHVVKS---GALEIQLDAYRVF-LDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L +++ G E TV V I RIR+ E P P + TI G GYRF Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 14/233 (6%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + I VED+ R + EGYD D E L I+L+I+DI LPGK+ Sbjct: 14 KCTMICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKS 73 Query: 62 GLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL + +E+R + N+ +M LT + E DKI+GL+ GADDY+ KPF+ EL R R LL Sbjct: 74 GLEILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALL 133 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R+ ++S+ + + + ELD + R+ + DGE +L EF + + N GK Sbjct: 134 RRS----SLSKTKSKI---IYKNIELDYDKRT-VSVDGENVELTYKEFELLYYLLSNVGK 185 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 + +R ++ K+ G + + RTVDV I +R+ + + II TI GY+ Sbjct: 186 VLTRENIMTKIWGFDFEGESRTVDVHIATLRQKLK---NASSIIKTIRNLGYK 235 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 2/232 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+L + L+ + +V DG + D +L+++D+++P NG+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RELR+ N ++ +T + E+DK+LGLEIGADDYITKPF+ REL RA+ ++ R+ Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + ++ E F ++++ R + +G++ L EF ++ PG+ SR+E Sbjct: 129 NQQTNDSKTAE-LDFGDLKVNVEMRR-VTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + G ++ TV+ I R+R E P I T G GYRF D+ Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 131/228 (57%), Gaps = 3/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + L Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRS-LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 S + ++ +F ++ IN ++ + G++ KL E+ +L N G + S Sbjct: 123 NEKSNKSNDIDIIEFK--DITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 ++ K++ + + TV V I R+R+ E P P+II T+ G GY+ Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDG-AEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ + L + EG++V G A ++L + + V++DI +PG +GL Sbjct: 8 ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMSGLD 67 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN- 123 + R +R + V ++ LTGR +++D+I+GLE+GADDY+ KP NPREL+ R + ++ RT N Sbjct: 68 VLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTENS 127 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 LG + + V + +G ELD +R+ + + L +EF A+ E G+ ++ Sbjct: 128 LGNGAAGKTIVHAL-LHGIELDTGTRTAV-VNNTTLPLTSAEFNALSLLMERAGQTITKQ 185 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ +++ R L+ +DR +DV I RIR+ S+ ++I +I G GY+ Sbjct: 186 DMTQEVLNRPLEAYDRAMDVHISRIRQKL-SSQGINDVIKSIRGVGYQM 233 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 TV + + ELD SRS + G+ L R EF + F +N K+ S Sbjct: 124 HRF-TVDQS----ATLTIGKLELDTESRS-VHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL ++ G + + RTVD I+ +R + I T+ G GY+F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + L S F+ E + V+ A DG E + L E +++++DI +PG Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R R+ ++ ++FL+ +D+E D+++GL +GADDY+ KPF+ REL R ++ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E V SY+ +D R + L +EF + P ++ Sbjct: 121 RRG-----EVLSQVASYEIRDLFID-KERFEVRRKKAWISLTPTEFSLLDILASAPDRVF 174 Query: 181 SRAELLKK-MTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL+K M G + +RT+D IR +RK E P P I T++G GY+F G Sbjct: 175 SRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G + Sbjct: 4 ILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFSV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 64 LKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRR----- 118 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + R E K+ +++ +R ++ +GE +L E+ + +NP +I ++ ++ Sbjct: 119 -YRKGRGEEEILKYGKVAVNLKTREVLK-NGEPVELTSKEYALLELLFKNPNRIFTKEQI 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 + ++ V V +RR+R+ E P +P II T+ G GY+ Sbjct: 177 MDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_B7K6Q7 Two component transcriptional regulator, winged helix family n=7 Tax=Cyanobacteria RepID=B7K6Q7_CYAP7 Length = 241 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 4/234 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +P IL+VED+ V + F+ + Y + A DG +I + ++ +LVI+DINLP Sbjct: 1 MASPKILVVEDDTVILELIFRFFKQKNYQLKTANDGRSALEIFTYFNPDLVILDINLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G L +++ +V +M LT R N DKI G GADDY+TKPF+ +EL R + LL R Sbjct: 61 IGYDLCERMQKSTDVYVMMLTSRINPEDKIQGFRRGADDYVTKPFDLQELEWRVKALLKR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +S + + + +D N R + G+ +L EF + +PGK+ Sbjct: 121 QARREVISSQ-TPLNVLVWKDLTIDPNRRE-VTVLGQGIELTALEFDLLFFLASHPGKVW 178 Query: 181 SRAELLKKM--TGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SRAEL++K+ + R VDV I +IR+ ++ +I T+ G GY+F Sbjct: 179 SRAELIEKVWKVSCSISSDLRVVDVHIGQIRRKIQAVSSRSYLIKTVRGVGYKF 232 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 15/232 (6%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG +G+ L Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 66 ARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 AR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + +L RT Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRT- 124 Query: 123 NLGTVSEERRSVESYKFNGWELD-INSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G E + G LD I+ R I DG+ ++ +E+R + F + + + Sbjct: 125 --GPGDSE----APIEVGGLLLDPISHRVTI--DGKPAEMGPTEYRLLQFFMTHQERAYT 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +LL ++ G + +RTVDV IRR+RK + ++ T+ G GYRF Sbjct: 177 RGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFS 226 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+ EDE R+ + + GY+V EA +G E + +++++DI +P +G + Sbjct: 4 ILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFAV 63 Query: 66 ARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R + V ++ LT R E DK++GL +GADDYI KPF+P EL R ++LL R L Sbjct: 64 CEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVETL 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + R V + +D+ ++ + G ++ +E+ + HF +N ++ SR E Sbjct: 124 RRRKQPRELVSG----PFRIDLGAKR-VQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDE 178 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL + G +TVDV IRR+R+ E P P+ I T+ G GY++ Sbjct: 179 LLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 128/237 (54%), Gaps = 12/237 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR- 120 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 121 ---TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 T NLG + S+ K +D N R + + E+ +L EF + G Sbjct: 124 DKITTNLGVPNSGIISIGFLK-----IDTNKRQ-VYKNNERVRLTGMEFSLLELLVSKAG 177 Query: 178 KIQSRAELLKKMTGRELKPH--DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + SRA +L+++ G + H R VDV I R+R E P P++I T G GY F Sbjct: 178 EPFSRASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P +G Sbjct: 4 NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L RT L Sbjct: 64 VCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 125 GT---VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 T VS++ +ES + W + I + L EF + N G++ S Sbjct: 124 NTKIQVSDDIIRIESMIIDKW------KHKITIANNEVSLTAREFEILYLLATNRGRVFS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 E+ +K+ + + TV V + R+R E + +II T+ G GY+ Sbjct: 178 AEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKI 228 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 19/244 (7%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VEDE +TLK E ++V A +G +I E++ +LV++DI LP Sbjct: 1 MLKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + + +++ + + LT RD+ +DKILG+EIGADDYITKPF RE+T R N + R Sbjct: 61 SGFELCKIMSQKSYIVM--LTARDDVIDKILGMEIGADDYITKPFEIREVTARI-NAIFR 117 Query: 121 TMNLGTVSEERRSVESY--------------KFNGWELDINSRSLIGPDGEQYKLPRSEF 166 ++ + E ++ S K + + ++ ++R++I DG++ L R EF Sbjct: 118 RVSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVI-KDGKEIMLKRKEF 176 Query: 167 RAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIH 226 + + +N G + +R +LL ++ G + RTVDV IRR+R + + I+ T+ Sbjct: 177 DLLSYLYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKENS-IVETVF 235 Query: 227 GEGY 230 G GY Sbjct: 236 GVGY 239 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P I++V+D+ RN + F + Y A DG + +++ +LVI+D NLP NG Sbjct: 30 PKIMVVDDDFSVRNLVHR-FLSRKYKTETAADGKSAMTLFEQFNPSLVILDWNLPDINGY 88 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++++ + NV ++ LT R++E DKI L GADD++TKPF+ E+ +R LL R Sbjct: 89 KLCQDMQNRTNVLVLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRVNALLRRIRY 148 Query: 124 LGTVSEERRSVESYKFN--GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + +R + N G E+ +N + L L EF + +PG+ S Sbjct: 149 IQPTQSQRLIFKQLAINPEGREVTLNDKPL--------ALTALEFNILHFLACHPGQAWS 200 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +L++K+ G + R VDV I ++RK E TPE I T+ G GY+F Sbjct: 201 RPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF 251 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 10/226 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+VEDE + ++ +G+ V DG ++DI LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE + ++FLT RD+EVD+I+GLE+GADDY+TKPF+PREL R R +L RT+ + Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E R+V + +R + GE +L +EF + H PG++ +R E Sbjct: 131 PEGVERVRTVGPVTLD------PTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGE 184 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 LL + G RTVDV + ++R +I T G GY Sbjct: 185 LLAAVWGYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 6/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L E I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDE-TIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 -TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + G + E + + + +L+ ++ DG + ++ E++ + ++PGKI Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVA-DGNKVEVSDLEYKILRLMMQHPGKI 183 Query: 180 QSRAELLKKMTGRE--LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S + + + RE TV V IR++R E P P+ I T+ G+GYRF Sbjct: 184 FSTQNIYESV-WREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRF 237 >UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7R2_9BURK Length = 239 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 126/238 (52%), Gaps = 4/238 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMH-QILSEYDINLVIMDINLPG 59 M ILIVED+ L + +GY V + D E +L+ D++LV++D+ LPG Sbjct: 1 MTGNSILIVEDDADISVPLAAFLSGKGY-VTQVADSVEAADALLATNDVDLVLLDVMLPG 59 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 K+GL L R L + ++ LT D+ DK++GLE+GADDY+ KPF+PREL R R +L Sbjct: 60 KDGLDLCRRLHAKGGPRIIMLTALDDPTDKVVGLELGADDYVPKPFDPRELLARIRAVLR 119 Query: 120 RTM-NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R + + G V++ + +F+G+ R + P G + L +E +L C+N K Sbjct: 120 RPVASEGEVAKPVTEL-VLQFSGFTFYPYRRFVRSPAGLRVPLTGAETDLLLVLCQNVRK 178 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 + SR EL+ G R++D+ + R+R+ E I T+ +GY F D+ Sbjct: 179 VLSREELINLTRGTNFPISGRSIDLLVSRLRRKLVGNDPLEETIRTVRTDGYAFQPDV 236 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 14/236 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI+EDE + L EG++ A G++ + L + +L+++D LP + Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++ Q N+ ++ LT R + DKILGLE+GADDYITKPF+ RE+ +R R +L R Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 121 TMNL-GTVSEERRSVESYKFNGWELDI---NSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 V E SV ++ DI + L+ GE L EF +L Sbjct: 121 LAQAQAPVKEAAPSVIGFR------DIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVR 174 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 G+I +RAELL+ + G + RTVD I+R+RK D ++I T+ G GY+F Sbjct: 175 GRIFTRAELLESVWGYDFPGDMRTVDTHIQRLRKKL----DAADLITTVFGIGYKF 226 >UniRef50_D1AFR9 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=D1AFR9_SEBTE Length = 221 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 19/230 (8%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVEDE+ L+ E +++F+A +G+ + E + +LV++DINLP K+G Sbjct: 4 KILIVEDEVNLMEVLEDTLLEENFEIFKAYEGSAAIDMFYEVNPDLVLLDINLPKKDGWT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R +N ++ +T RD E+D++ GL IGADDYITKPF+ + LT+R + LL Sbjct: 64 ICKEIRNDSNKPIIIMTARDTELDELKGLSIGADDYITKPFSLKILTLRIKKLLK----- 118 Query: 125 GTVSEERRSVESYKFN--GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E+ E+ +FN +EL I+S+++ ++ + E + + +N GK+ +R Sbjct: 119 -IENEDYYLYETLRFNFGTYELIIDSQNI--------EITKKESLFLDYIIKNKGKLLTR 169 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL ++ G + +R VD I+R RK D +I T+ G GY F Sbjct: 170 DMLLNEVWGYDFDGDNRVVDTLIKRTRKKLSPYGD---LIKTVRGMGYMF 216 >UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales RepID=C9XSJ2_CLODC Length = 228 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I +VED+ L + +EG+ V + +E +++ +L ++DI+LP NG Sbjct: 3 RIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPDGNGFT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + E++E+ ++ ++FLT +E + GL +GADDYITKPF PREL R R L ++ Sbjct: 63 ICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGRF 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 G+ +++ G +D + ++ +G + L E+R +L F NP I +R Sbjct: 123 GS---------TFEICGLYVD-TATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVR 172 Query: 185 LLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL ++ + +D T+ V I+R+R+ E P +P+II T+ G GYR G Sbjct: 173 LLDELWDAAGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRLGG 223 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 124/240 (51%), Gaps = 19/240 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T ILIVEDE + GY V +A ++ + N++I+D LPGK+G Sbjct: 2 THRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSG 61 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + A+ELR + ++ LT + E DK+LGL+ GADDY+TKPF+P+EL R R +L Sbjct: 62 VQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLR 121 Query: 120 RTMNLG-----TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFC 173 R M + TV + S++ + S+++ +GP +EFR + F Sbjct: 122 RQMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGP---------TEFRLLQFFM 172 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 NP ++ SRA LL K+ G E+ +RTVDV I+R+R D I T+ G GYR Sbjct: 173 ANPERVHSRASLLDKVWGSEVYIEERTVDVHIKRLRAALVPF-DCDRYIETVRGSGYRIT 231 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI++D+ +K +AE + G E Q L E + LV++D+ +PG +G Sbjct: 20 KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 E+R++ ++ ++ T +++ + K+ GL GADDY+TKPF+ EL R +L+ R Sbjct: 80 TLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRF 139 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +++ +++ F+G ++D+ +RS +G ++LP EF +L+ ++ GKI ++ + Sbjct: 140 ---NQQAGAIQKLNFDGLQIDLENRSATTSNG-TFELPPKEFDLLLYCAKHQGKILTKQQ 195 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + +++ G E D + I R+RK E P +P+ I T+ G GYRF Sbjct: 196 IYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_B1ZLF1 Two component transcriptional regulator, winged helix family n=23 Tax=cellular organisms RepID=B1ZLF1_METPB Length = 291 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 8/237 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PHI +V+DE R + G+DV G + L +L+++D+N+P ++GL Sbjct: 50 PHIAVVDDEADARAMVGDYLRLHGFDVALCEGGRALRAHLQIRTPDLIVLDLNMPEEDGL 109 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R+++ ++ + ++ LT + +D+++GLE+GADDY+ KP REL R R++L R Sbjct: 110 SIVRDMKARSPIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAQG 169 Query: 124 --------LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 E + +F L++++ L G + L RSEF + F ++ Sbjct: 170 APPPPPAQPTPAPEPAACARTIRFGTKWLELDALRLRDDAGVEQPLTRSEFDLLKAFADH 229 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 P + SR LL R+ DR +DV I RIRK E P P I T+ G GY F Sbjct: 230 PKRALSRERLLDLADARDPDAFDRAIDVRINRIRKKVEPDPANPRFIRTVRGLGYIF 286 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 18/233 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P +LIV+D+ L+ +G+ V EA +GA+ +L + D+ ++D LPG G Sbjct: 15 VPTVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLPQADV--AVLDWMLPGMTG 72 Query: 63 LLLARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L LAR R A V L+ LT RD E DK+LGLE GADDY+TKPF+PRE+ R + LL Sbjct: 73 LELAR--RAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLR 130 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +G R +E + + LD+ +R+ GE L + EF + + PG Sbjct: 131 R---MGV----REVIEHGELH---LDVRARAAT-LRGEALGLSKLEFDLLFTLAQYPGLA 179 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R LL+++ G + +R VDV I +R+ + P I T+ G GYRF Sbjct: 180 WTRERLLERVWGVDYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRF 232 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 132/234 (56%), Gaps = 18/234 (7%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +GL + Sbjct: 4 ILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLDV 63 Query: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + Sbjct: 64 CKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIK------- 116 Query: 123 NLGTVSEERRSVESYKFN-GW-ELDINSRS-LIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + EERR+ + W +L+I S ++ GEQ L EF + F + P ++ Sbjct: 117 --ARLREERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR LL+K+ G + RTVDV I +R +S +P II ++ G GYR Sbjct: 175 FSREYLLQKVWGYTVSGDTRTVDVHISNLRSKLKSV--SP-IIESVRGVGYRLA 225 >UniRef50_A1VTZ3 Two component transcriptional regulator, winged helix family n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTZ3_POLNA Length = 255 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+++D+ + + +G + A A L++ +++++D+ LP NGL + Sbjct: 31 VLMIDDDAELAGMVGELLLGQGMQLRSAATAALGLAALAQRQPDVLLLDLMLPDANGLDV 90 Query: 66 ARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 R LRE N + ++ LT R + D++LGLE+GADDY+ KPF+PREL R R L R + Sbjct: 91 CRRLRESGNDLPVLMLTARGDPFDRVLGLELGADDYLGKPFDPRELVARIRALARRGQS- 149 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 RRS + +FNG LD+ +R P G L SEF+ +L PG SR Sbjct: 150 -----ARRSTQ-LRFNGLSLDLLARRATCPAGA-LALTSSEFKLLLALASQPGASVSREA 202 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L + P DR VDV + R+RK + + E I T+ GEGY F G Sbjct: 203 LCAAVQPGSYMPLDRAVDVQVARLRKKLAAAGER-EWIETVRGEGYVFTG 251 >UniRef50_A0NNN8 DNA-binding response regulator n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNN8_9RHOB Length = 240 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 6 ILIVEDELVTRNTLKSI---FEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IV+DE N L FE EG VF A+M LS + I+D+ LP G Sbjct: 13 VFIVDDEPEIGNLLLDALLQFEMEG-KVFAT--AAQMLTALSLETPDACIVDLGLPDMEG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + L E+R +++V ++ L+ R + D+++GLE+GADDY+ KPF+PRE+ R R++L R+ Sbjct: 70 MALINEIRRRSSVPIIVLSARGHSTDRVMGLELGADDYVVKPFDPREVVARIRSILRRSS 129 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +L + ++ SV+ +F GW S L P+GE+ L E + P ++ SR Sbjct: 130 DLPS---KKASVDCARFEGWSYQPASHCLTSPEGEETFLSTGEATLLEALLRAPKRVLSR 186 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ GR+ + DR++DV I RIRK + + P I TI+G GY D++ Sbjct: 187 DYLLEH-GGRD-ESLDRSIDVRISRIRKKL-NRKNEPAHIRTIYGSGYMLACDVK 238 >UniRef50_B7JF46 DNA-binding response regulator n=87 Tax=Bacteria RepID=B7JF46_BACC0 Length = 225 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 10/232 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HIL+ +D+ R L + EG+ VFEA DG ++L + +I+L I+DI +P Sbjct: 1 MKMIHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L E+R+ ++ ++ LT +D VDK G G DDYI KPF P E+ R + LL R Sbjct: 61 DGYTLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L S + +G +D + +G+ LP EF + PG+ Sbjct: 121 YQML--------SADIITLHGTTIDRKGVE-VKCNGQTILLPLKEFELLSQLASYPGRTF 171 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR EL++ + G + + +RTVDV ++R+R F D + I T+ G GY+ Sbjct: 172 SREELIELVWGMDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKL 222 >UniRef50_C8X3Y5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3Y5_DESRD Length = 236 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE L+ + EGY V A DG E + + + +L+I+D+ LP +G + Sbjct: 9 ILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYEV 68 Query: 66 ARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ARE+R + + ++ LT R D+I GLE GADDY+TKPF+ +EL +R + +L R Sbjct: 69 AREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQWY 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPD-GEQYKLPRSEFRAMLHFCENPGKIQSRA 183 V+++ V +F E +N +L E+++L E + + E+ G++ SR Sbjct: 129 QDVTQQEPVV---RFG--ENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRK 183 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ELL+ + E RTVD I R+RK+FE+ P PE I ++ GY+F Sbjct: 184 ELLENVWQVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQFLS 234 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 25/234 (10%) Query: 8 IVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLAR 67 +VED + RN ++ EGYDV A DG E + +Y VI+D+ LP +G + R Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 68 ELREQAN--VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +R Q ++++ LT + + KI GL IGADDY+ KPF+P EL R +L R+ Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQF- 127 Query: 126 TVSEERRSVESYKFNGWELDINSRS-LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + NG L I R ++ +G+ L + EF + +F ENP + SR + Sbjct: 128 --------CQKISLNG--LIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQ 177 Query: 185 LLKKMTGRELKPH------DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L++ ++ PH DRT+D I+++R+ E P P+ I T+ G GYRF Sbjct: 178 LIQ-----QIHPHTDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRF 226 >UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria RepID=Q3K1Z3_STRA1 Length = 234 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+ + T L+S E Y V A+DG E + ++ I+L I+DI LP +G L Sbjct: 4 VLVVQGDDETIELLRSYLEGALYKVVMASDGEEAFSLFQQHQIDLAIIDITLPKIDGYEL 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R+ + + ++ L + ++D+ILGL IGADD+ITKPFN E+ R + L R Sbjct: 64 TRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYEFN 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++++ + + K ELD L +G+ KL +EF+ + +PG+I ++ +L Sbjct: 124 SLAKPKN--QFIKIGELELDEEHVEL-TKNGKHIKLTATEFKILHILMSSPGRIYTKTQL 180 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +K+ GR L+ + T+ V I IR E P+ I T+ G GY+ Sbjct: 181 YEKINGRYLEGDETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKI 227 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + L E Y+V + DGAE ++L + + + +I+D+ LPG + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GLLLARELREQANVALMFLT-GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R R + +T R +EV +ILGLE+GADDY+ KPF+ EL R + LL R Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + R + G +D +R DG + L EF + F +PGK+ Sbjct: 123 VDALA--RDSRIDAGTLDVAGLAIDPIARE-ASVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL + G + + ++ TV+ I R+R E+ P P I T+ G GY+ Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ + Sbjct: 58 VLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIEV 117 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 118 FRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR----- 172 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGP-DGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +E E+ L +++ + G L EF + PG+ +R E Sbjct: 173 -ANETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGE 231 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL+ + G TV V IRR+R+ E P P ++ T+ G GYR+ Sbjct: 232 LLEHVWGWSYG-DPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E+ + + F+G ++ N R ++ DG+ L EF +L E PG++ S+ Sbjct: 133 RYNGLKEQEKVLS---FDGLTINTN-RRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L ++ ++ RTV V I+ +R+ P I T+ G GY+F G Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 10/241 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE----YDINLVIMDIN 56 M PHILI+EDE +L + E+E + T + L ++LV+MD+ Sbjct: 1 MSVPHILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVG 60 Query: 57 LPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARN 116 LP G ++LR + V ++FLT R +E+D+++GLEIGADDY+ KPF+PREL R + Sbjct: 61 LPDMTGFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKA 120 Query: 117 LLSRTMNLG-TVSEERRSVESYKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAMLHFCE 174 +L RT +G T++ V+ + E I++ R I + L R EF + Sbjct: 121 ILKRTRQVGATLASAAADVQ----DASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVM 176 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 PG++ SR +LL + +DR++D I+ +R + E I T+ G GY + Sbjct: 177 QPGRVFSREQLLDALGISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYAYQP 236 Query: 235 D 235 D Sbjct: 237 D 237 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 6/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 +++ +++V+D+ R L+ G++ G + + LS + +++D+ + G+ Sbjct: 3 VKSDRVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGE 62 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + R LR + ++ LT R + +D+I+GLE GADDY+ KPF PREL R +L Sbjct: 63 DGLAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT + V + ++ E++ ++R ++ DG KL EF + + G+ Sbjct: 123 RTRGMRDVPTD----DTVTIGPLEINFSTR-MVTRDGASLKLSSREFALLAAMVRSRGRP 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SRA+L+++ GR+ + DR VDV I R+R+ D +I T+ G GY D Sbjct: 178 LSRAQLIERALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVSD 233 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G L Sbjct: 14 ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGYEL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R M++ Sbjct: 74 LKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR-MDVF 132 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + E+++ E + LD+ S L +G+Q ++ EF+ + ++ G++ ++A + Sbjct: 133 S-KGEKQNHEIIQIGDVMLDLVSCKLY-KNGQQKEVTSYEFKILSLLMKHAGRVFTKASI 190 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + G+E + + V I ++R+ E P P + TI G GYRF Sbjct: 191 YEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_B4WZT8 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZT8_9GAMM Length = 225 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P +LIVEDE L E E + V T G + ++ ++LV++D+ LP NG Sbjct: 2 PAVLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMNGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++LR+ + + ++FLT R +EVD+ILGLE+G DDY+TKPF+PRE+ R R +L R Sbjct: 62 DVLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKR--- 118 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 LG S+ +++ K W++D + + E L RSE+R + + PG++ SRA Sbjct: 119 LGPKSDA--DIDTNKTTLWQVDDSGLRVFFRHTE-LSLTRSEYRILTTMVQRPGQVFSRA 175 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +LL E +R+VD I+ +R + +I T G GY Sbjct: 176 QLLDICDSDE-DSFERSVDTHIKTLRAKLRPL-NGDHLIVTRRGIGY 220 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 135/247 (54%), Gaps = 28/247 (11%) Query: 6 ILIVEDE-----LVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 IL+VEDE LV N +K EGY+V T G E E D +L+I+D+ LPG Sbjct: 4 ILLVEDEHHIAKLVNHNLIK-----EGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGL 58 Query: 61 NGLLLARELREQA--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR-NL 117 +GL + R++R + ++ ++ LT + +E++KI+GLE+GADDY+TKPF+PREL R + L Sbjct: 59 DGLEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQL 118 Query: 118 LSRTMNL---------GTVSEERRSVESYKFNGWELDINS---RSLIGPDGEQYKLPRSE 165 RT L + ++R E K NG L I R+ I + ++ +L E Sbjct: 119 RGRTKELTDEKSQDNSNKIFDQRDKSEDVKKNG-PLSIKPEKYRAYI--ENQELQLTPKE 175 Query: 166 FRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATI 225 F + N G++ +R +LL+K+ G + RTVDV IR +R+ P+++ T+ Sbjct: 176 FELLNIMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETV 235 Query: 226 HGEGYRF 232 G GYR Sbjct: 236 RGIGYRL 242 >UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=Gammaproteobacteria RepID=A4CEI9_9GAMM Length = 245 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 5/233 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HIL+VED++ + +K E + Y V G QI+ E + +LVI+D LPG + Sbjct: 7 HTAHILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLD 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + + +R ++ +T RD E+D++LGLE+GADDY+TKP L+ + R L R Sbjct: 67 GIDVLKAVRPAFANTIIMVTARDEELDEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQ 126 Query: 122 MNLGTV----SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + SE RS +S+++ + +D +RS + + + + +EF + E G Sbjct: 127 TIMKRSQDIESEVGRSSDSFQYGDFSIDKQARS-VELNNKIVDISSNEFDLLWLLAERAG 185 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +R EL++ + G + DRTVD+ + ++RK P P I T+ G+GY Sbjct: 186 NTVTRDELIQALRGFDYDGFDRTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGY 238 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +I IVED LK E + V + G E+ + +L+++D+ LPG Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L RE+R + V ++ +T + E+D++LGLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 68 DGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E + L + S I G+ K+ +SEF + F +PGK+ Sbjct: 128 -------GGEEPHEAAIHIGPLLLKPETHS-ITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR EL+ K+ GR + +DR +D I+ +RK + E I +++G GY+F Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 3/231 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE+ + ++EG+ V A DG + + NL I+DI LP +G + Sbjct: 4 ILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSEV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R + + ++ LT +DN++DK++ +GADDYI KPF+ ELT R + +L RT Sbjct: 64 LQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGTH 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSL-IGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++E + E+ G L+IN + + G L EF + + E P ++ + A+ Sbjct: 124 HITENQVGKETILHCG-SLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQ 182 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF-CG 234 + + + G+E D TV V I R+R E P P+ + T+ G GYR CG Sbjct: 183 IYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCG 233 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 133/233 (57%), Gaps = 9/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+ +D+ + +K F+ EGY+V A +G E ++++ ++VI+D+ +P +G Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +++R +++V ++ LT + +++D+ILGLE+GADDY++KPFNPREL R + +L R Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA--- 119 Query: 125 GTVSEERRS--VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 S+ER +G L R+ + +GE +L SE+ + PG++ ++ Sbjct: 120 ---SQEREDDPTADIDLSGVLLRRKDRT-VYLEGELVELTTSEYTLLECMLMAPGQVLTK 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 EL +K GR+L +DR++D+ I +RK + + I T+ G GY F + Sbjct: 176 QELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE + A + VF A + + +L I+LV++D LP +GLL Sbjct: 22 QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++LR + +M LT RD E D +LGLE GADDY+TKPF+ EL R + LL R + Sbjct: 82 LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL- 140 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + R+ +E F G +D++SR +I D L EF + +P ++ SR Sbjct: 141 --SAAPTRQLIE---FEGLRIDLDSREVIAFDNP-LSLTAKEFDLLTFLARHPQQVFSRT 194 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL + G + TV+ I R+R P + E++ T+ G GY+F Sbjct: 195 QLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_Q398T9 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q398T9_BURS3 Length = 395 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 10/233 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ I++++DE RN L+ G+ V DG + ++L +L+++D+ + ++ Sbjct: 161 QSCRIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEPED 220 Query: 62 GLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R LR E + ++ LT + + DK++GLE GADDY+ KPF P EL R R LL R Sbjct: 221 GLSVCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRR 280 Query: 121 -TMNLG--TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 M G TV+ +R +F + D+ ++L+ DG ++ ++ + +P Sbjct: 281 QKMAAGEPTVTSQR-----LRFGAFTFDVGQQTLM-RDGTPVEIHSAQMLLLHALGSSPN 334 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 + SR LL + GR+ DR+VDV I R+R+ E P P I T+ G GY Sbjct: 335 RAVSRENLLARARGRDHAALDRSVDVQILRLRQIVEDDPGKPRFIKTVWGIGY 387 >UniRef50_A4EGJ5 Two component transcriptional regulator, winged helix family protein n=4 Tax=Rhodobacteraceae RepID=A4EGJ5_9RHOB Length = 236 Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 4/236 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P + +++D R+ L E G+ V A+ Q + I+D+ LP +G Sbjct: 4 APLVTVLDDTPEIRSILSDALEQAGFRVRSFGRAADFEQACKTITPDACIIDLGLPDSDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L Q++V ++ ++GR DKI+GLE+GADDYI KPF E+ R R +L RT Sbjct: 64 LALVHRFASQSDVPILIISGRSRTQDKIVGLELGADDYIIKPFEVEEVIARLRVILRRT- 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N +V + ++V+ F GW D+N L GE L +E + F +P ++ R Sbjct: 123 NAESVKSDAKTVQ---FCGWTADLNLLQLTKETGENQSLTFAENEILKMFLASPNRLIKR 179 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++L + +DR++DV + R+R II T++G GY F ++++ Sbjct: 180 EQILDYLGSSADDAYDRSIDVKVSRLRTKLGDDAQNARIIKTVYGAGYIFIAEVKE 235 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 10/237 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL-VIMDINLPG 59 MQ P ILIVED+L +K+ E + V A D A +E ++ L VI+D+ LP Sbjct: 1 MQPP-ILIVEDDLKIARIIKAYLEGADFRVIHA-DTARAALEKAEAELPLAVILDLGLPD 58 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 K+G L +EL++ + ++ LT + +E ++I G +GADDY+ KP +PREL R + +L Sbjct: 59 KSGEELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLK 118 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINS-RSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R G FN L ++S R + GE + +EF+ + +PG+ Sbjct: 119 RYDGAGA------GEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGR 172 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR EL+ K G + ++R+VD I+ +R+ E PE I T++G GY F G+ Sbjct: 173 TYSRDELVSKALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFSGE 229 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 120/232 (51%), Gaps = 10/232 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R + N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 TM S+ + F +D S + + GE L EF ++ N G Sbjct: 191 TMPRSEASD-----GTMTFGELTIDTASHT-VRVAGEDVSLTPKEFDLLVFLASNKGIAL 244 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ++L+K+ + DRTVD ++ +R H IAT+ G GY+F Sbjct: 245 SREKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKF 293 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 19 LKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALM 78 L E G+ V G + + +LVI+D+ +PG+NGL + R++R + V ++ Sbjct: 20 LTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGSKVPVI 79 Query: 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTV----SEERRSV 134 LT + + D+I+GLE+GADDY+ KPFNPREL R + +L R +GT S +R+V Sbjct: 80 MLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSAAQRAV 139 Query: 135 ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGREL 194 + G L++ SR ++ D ++ +L +EFR + ENP +R EL+ GR+ Sbjct: 140 -LVEAGGLALNV-SRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAWGRDF 197 Query: 195 KPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +DR++DV + ++R + I T+ G GY F G Sbjct: 198 SAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFVG 237 >UniRef50_B6R2K8 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B6R2K8_9RHOB Length = 258 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 12/243 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 + +V+D+ R L+ + G+ ++ + ++L I+D+ L G++G++L Sbjct: 12 VAVVDDDPAIREVLQELLHEYGFQALPCHGSKDLINLKELESLDLAIIDLKLDGESGMML 71 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-TMNL 124 A+ LR + ++ LTG +EVDKI+GLE GADD++ KPFNPREL R R +L R N+ Sbjct: 72 AQRLRTSYDFPIILLTGTGDEVDKIVGLETGADDFLMKPFNPRELIARIRAVLRRYKRNV 131 Query: 125 GTVSE---------ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 E + S + R L+ + + L SE R + EN Sbjct: 132 PAEPEPNVAKAPVPQASSAGIIPLGDLSFICDERRLLDTNLREINLTNSELRLLEFLIEN 191 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 P + R ELL+ + G + DRTVDV I R+R+ E+ P P + T G+GY F Sbjct: 192 PNRPIDRVELLEHLGGDLSRYMDRTVDVLILRLRRKIEANPSKPVFLQTRRGKGYVFA-- 249 Query: 236 LED 238 LED Sbjct: 250 LED 252 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 327 2e-88 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 T... 321 1e-86 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 317 2e-85 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 315 9e-85 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 313 3e-84 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 312 6e-84 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 311 1e-83 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 311 1e-83 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 311 1e-83 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 311 1e-83 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 310 2e-83 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 309 4e-83 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 309 6e-83 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 308 9e-83 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 308 1e-82 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 308 1e-82 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 308 1e-82 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 307 1e-82 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 307 1e-82 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 307 2e-82 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 306 4e-82 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 306 6e-82 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 305 7e-82 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 305 9e-82 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B8G223 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 304 2e-81 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 304 2e-81 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 304 2e-81 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 304 2e-81 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 304 2e-81 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 303 3e-81 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 303 3e-81 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 303 3e-81 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 303 4e-81 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 302 6e-81 UniRef50_C4L703 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_B8I272 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C4L340 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 301 1e-80 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 301 1e-80 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A4J267 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 299 4e-80 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 299 5e-80 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 299 5e-80 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 298 1e-79 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 298 1e-79 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 298 1e-79 UniRef50_D1C683 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_B8I014 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 297 2e-79 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 297 3e-79 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 296 3e-79 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 296 3e-79 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 296 3e-79 UniRef50_B8G179 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 296 5e-79 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 296 6e-79 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 296 6e-79 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 296 6e-79 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 295 7e-79 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 295 7e-79 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 295 7e-79 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 295 1e-78 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 295 1e-78 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 295 1e-78 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 294 2e-78 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 293 3e-78 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 293 3e-78 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 293 4e-78 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 293 4e-78 UniRef50_D1C280 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 292 6e-78 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 292 6e-78 UniRef50_A4AL32 Putative two-component system response regulator... 292 6e-78 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 292 7e-78 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 292 7e-78 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 292 9e-78 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 292 9e-78 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 292 9e-78 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 291 1e-77 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 291 1e-77 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C0WE14 Two-component system transcriptional regulator n... 291 2e-77 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 291 2e-77 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 291 2e-77 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 291 2e-77 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 290 2e-77 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 290 3e-77 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 290 3e-77 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 290 3e-77 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 290 3e-77 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 290 4e-77 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 289 4e-77 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 289 4e-77 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 289 5e-77 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 289 5e-77 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 289 6e-77 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 289 6e-77 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 289 7e-77 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 289 7e-77 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 289 8e-77 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 288 8e-77 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 288 8e-77 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 288 9e-77 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 288 1e-76 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 288 1e-76 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 287 2e-76 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 287 2e-76 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 287 2e-76 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 287 2e-76 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 287 2e-76 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 287 3e-76 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 287 3e-76 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 286 4e-76 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 286 4e-76 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 286 4e-76 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 286 5e-76 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 285 6e-76 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 285 6e-76 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 285 7e-76 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 285 8e-76 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 285 8e-76 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 285 8e-76 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 285 9e-76 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 285 1e-75 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_B8IVD0 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 284 2e-75 UniRef50_A7ICZ4 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 284 2e-75 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 284 2e-75 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 284 2e-75 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 283 3e-75 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 283 3e-75 UniRef50_A8GAJ9 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 283 3e-75 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 283 4e-75 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 282 5e-75 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 282 5e-75 UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacilla... 282 5e-75 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 282 5e-75 UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6... 282 6e-75 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 282 6e-75 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 282 7e-75 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 282 9e-75 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 282 9e-75 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 282 9e-75 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 282 1e-74 UniRef50_Q3A190 Two component signal transduction response regul... 281 1e-74 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 281 1e-74 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 281 1e-74 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 281 1e-74 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 281 2e-74 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 281 2e-74 UniRef50_A0L527 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 280 2e-74 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 280 3e-74 UniRef50_D1U371 Two component transcriptional regulator, winged ... 280 3e-74 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 280 4e-74 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 279 4e-74 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 279 4e-74 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 279 5e-74 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 279 6e-74 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 279 6e-74 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 279 7e-74 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 279 8e-74 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 279 8e-74 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 278 9e-74 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 278 9e-74 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 278 1e-73 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 278 1e-73 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 278 1e-73 Sequences not found previously or not previously below threshold: UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 298 1e-79 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 295 7e-79 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 283 3e-75 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 280 2e-74 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 280 3e-74 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 280 3e-74 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 279 4e-74 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 279 6e-74 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 278 1e-73 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ R L EGY + A DG + + +LVI+D+ LPG Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R +++V ++ LT R +E DK+ GLE GADDY++KPF REL R + LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + +E + K E+ I R L+ +G EF +N ++ Sbjct: 147 SQTQNSQTE---TTGGLKIGDLEIFIE-RHLVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL+K+ G + RTVDV I +R+ E+ P +P + T+ G GY+F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 130/235 (55%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + LG+ + + F G +DI S+ ++ ++ L E + F NP ++ Sbjct: 121 FLVLGSNANTQEKT-ILTFKGLTIDI-SKYIVTVGDKEISLTGKELELLKFFASNPEQVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ +L + + D TV V IR++RK E+ P P+ I T+ G GY+F G+ Sbjct: 179 TKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_P0A9Q3 Aerobic respiration control protein arcA n=222 Tax=Gammaproteobacteria RepID=ARCA_ECO57 Length = 238 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR Sbjct: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ Sbjct: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED Sbjct: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLG---TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R L +E + +F GW LD R L+ PDG L +E+R + F + P Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYP 180 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ SR +LL GR + DR++DV + R+R P+II T+ G+GY D+ Sbjct: 181 NRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 Query: 237 E 237 E Sbjct: 241 E 241 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 6/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + EGYDV +A D E +++ +++ I+DI LPG Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G L R+LR + N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ R + + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 R EER K G E+D+ + ++ L EF + EN G Sbjct: 145 FRRIQLSAQEREERPKKIVAK--GLEIDVERYE-VKVHDQKVSLTPLEFELLRFLAENEG 201 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 K+ SR LL K+ G + RTVDV IRR+R E P P+ I T+ G+GY+F Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE R L + GY+V A DG Q E +LV++DI LP +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R+L+ + + + ++ LT + E+D++LGLE+GADDY+ KPF+ REL R + +L R+ Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 122 MNLGTVS-EERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 ++ S E + ES G LD +S D + L E+ + NPG+ Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHD-KTIALTPKEYELLKLLVTNPGRAF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR ELL+++ G E RTVDV IR +R + P + I T+ G GYRF Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 4/231 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R L Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---L 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S K LD NSRSL G +L +E++ + F +PG++ SR + Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSL-TIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L++K+ + ++RTVD I+ +RK ++PD P I TI+G GY+ G+ Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP ++GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R + Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 SE + F+GW +D R L P G + L +EF + FCE G++ SR Sbjct: 135 ALNASEN-VGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSRE 193 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ G DR++DV + RIR+ E+ P +I T+ GY F +E Sbjct: 194 VLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVVE 247 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 105/233 (45%), Positives = 146/233 (62%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T++ SE+ F GW LDI R L PDG +L R EF + F PG++ Sbjct: 121 TLSAREASEDENQK---SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVM 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL ++ R+ P DRTVDV + R+R+ E+ P P I T+HG GY F Sbjct: 178 TRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 118/233 (50%), Gaps = 5/233 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + L R G +L E+ + +PG + +R Sbjct: 121 ----AASRQDRAGRLVVGDLVLHPRQRRA-EVAGRPLELTAREYDLLELLARHPGVVYTR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ELL + G + +RTVDV +RRIR+ E P P + T G GY + Sbjct: 176 QELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL V+D+ L+ EG++V A+ G E Q + +LVI+D+ +PG +G Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ++L+ Q V ++ L+ R EVD+++G +G DDY TKPF+P EL +R + +L R Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E K+ LD R+ + + + +L +F + NP ++ ++A Sbjct: 124 KVNLEN-----MLKYGNLTLDYTKRT-VAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL K+ D TV V IRR+R+ E+ P PE I T+ G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 130/231 (56%), Gaps = 6/231 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRV 126 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ E +F +D++ + G++ L SEF+ + PG++ S Sbjct: 127 H-----ADSEPQREVLEFGELTIDVSGHK-VLVGGKEVDLTASEFKLLTTLSRYPGRVYS 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R EL++K+ G + + ++RT+D ++ +R P P+ + T+HG GYRF Sbjct: 181 RMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGL 63 +LIVED+ R+ ++ EG + DG ++LS +LV++D+ LPG +G+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 64 LLARELRE----QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + RELRE V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R L Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S E+R +F G E+D+ R + GEQ +L EF + NPG++ Sbjct: 123 RQRMNAQASPEQRK---LEFPGLEIDLLRRRVTAR-GEQVELTAREFEVLALLASNPGRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +++ + G E R+ DV I+ +R+ E P P I T+ G GYRF Sbjct: 179 YSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 2/232 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++E S E +F ++ +R ++ + E +L EF + ++P ++ SR Sbjct: 121 QVAIQAKESLS-EVIEFPDLKIYPKTRCVLVCENE-VELTVKEFEVLYVMAKHPKQVFSR 178 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++LL+ + + TV V + R+R+ E I T+ G GYRF Sbjct: 179 SQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEP 230 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 131/236 (55%), Gaps = 7/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + S++ + +E+D+ R+ + G++ L EF + +PG++ +R Sbjct: 121 SDLSKSQKIVAP------PFEMDLVKRT-VKVKGKEVNLSYREFEILKLLLSSPGRVWTR 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++K + G R VDV IR +R+ E P P+ I T+ GY+F ED Sbjct: 174 DMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M I++V+DE R+ + E EGY V +A +G + ++L + ++L+I+DI +P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ ++RE+ N+ ++ L+ + ++DKI GL GADDY+TKPFNP EL R ++ L R Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 V + + + + ++ + + ++ +L EF + N G + Sbjct: 121 YKKFN-VQNGYINDDIIEIDELTINTATHE-VQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S ++ +++ E D TV V IR++R+ E P P+ + T+ G GY+ Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE +KS EGY+V A +G E + +L+++D +P +G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R+++ + ++ LT + EVDK++G E G DDY+ KPF+ REL+ R + +L R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE-- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ L + R + G+ L +EF+ + F +NPGK SR E Sbjct: 122 ---AKTINEEIVLTEGDLTLYPHKREVFLK-GKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ G + ++RT+D I +RK E P PE I T+ G GY+ E Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGE 230 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE L + GY+V ATDGA+ + +++D+ LP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 NGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + ++LR E+ ++ +T +++E DK+ GLE+GADDYITKPF+PRE+ R + ++ Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 120 RTMNLGTVSEERRSVESYK----FNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 RT V+ + + ++D N + +G+ L EF +++F E Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYR-VARNGKNISLTPKEFELLVYFVER 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 G++ SR +L + G + R VD+ I +R+ E+ P P +I T+ G GY F GD Sbjct: 180 EGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ E E Y + EA +G E E + +L+++D+ +PG + Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R++RE+ ++ LT + E +++ G E G DDYI KPF+PRE+ +R + LL R Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + F+ +D ++ + DG + L E+ + + P K+ Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHR-VTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRFCGDLE 237 R +LLK++ E RTVD ++R+R+ +P+ + I T+ G GY+F E Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++ Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + S +F W L+ R L+G DG L +EFR + E PG+I + Sbjct: 123 TPASEGASSLLE-GSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVT 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R ELL K++GR +P DR++D I R+R+ E P P I T G GY F Sbjct: 182 RDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ELD SRS + G+ L R EF + F +N K+ S Sbjct: 124 HRFTV-----DQSATLTIGKLELDTESRS-VHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL ++ G + + RTVD I+ +R + I T+ G GY+F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 138/235 (58%), Gaps = 4/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 V E+ ++ ++ F +D++ R +I GE+ EF ++ ++PG + Sbjct: 150 LQPKPKV-EDEAALRTFVFEQLTIDLDKREVI-VAGEKVSFRPKEFDLLVQLVKSPGSVW 207 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +LL+++ G + RT+DV I++IR+ + P + I T+ G GY+F D Sbjct: 208 SREQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGYKFGVD 260 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ IL++ED + E Y V +DGAE + + +L+I+DI LP Sbjct: 1 MQK-RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + ++ LT + +E D+++GLE GADDY+TKPF+ REL R + L Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT S + + ++ F +D R L D ++ L EF +L+ +PG++ Sbjct: 120 RTDMSQKESTPQ-ADDALHFGELCIDKTKRRLTIGD-KEITLTAKEFDLLLYMASHPGQV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL + G + ++ TV+ I R+R E+ P+ + T+ G GY+F Sbjct: 178 FSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ-- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + + K+ G E+ + R + D + ++ EF + H +NP ++ +R E Sbjct: 124 ---AADPATNWQLKYPGLEIRADIRK-VLVDAAESEVTPREFDLLYHLAQNPQRVFTREE 179 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + G + RTVDV IRR+R S P E + T+ G GY+F ++ Sbjct: 180 LLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ +N K+ EG+ + A GAE Q+ + +L+I+D+ LP Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R +R + V ++FL+GR++++D+I+G IG DDYITKPF+P L + ++ + R Sbjct: 61 DGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + + + F +D + + +G+ L EF+ + EN G++ Sbjct: 121 YKELSGSPKAASNGRALIFGELAIDRDCCE-VTREGKPISLAAKEFQLLCCLAENAGRVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S L + G++ RTV V I +RK E P PE I T+ G GY+F G Sbjct: 180 SAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 2/228 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R + Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + ++ S I GE +L EF + ++ G++ +R Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYS-IKKRGEDIELTHREFELFHYLSKHMGQVMTREH 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL+ + G + RTVDVTIRR+R+ E P PE I T G GY Sbjct: 182 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 135/233 (57%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + F GW LD ++R + P+G L S++ + E+P + SR Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRDF 185 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L++ + G+E DR++DV I R+R H E+ P II T+ GY ++ Sbjct: 186 LVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVK 238 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 2/236 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+ Sbjct: 79 EDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKS 138 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R Sbjct: 139 GIEICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N S R SY+F GW LD R L P + +L +EF + F ++ I S Sbjct: 199 ENNRAPS--RPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILS 256 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R +L++ + + +DR+VD+ I R+R+ +P++I TI GY+F ++E Sbjct: 257 RDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEVE 312 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 3/235 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++ Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 N + + F ++L++ +R + D E L EF + +P + Sbjct: 123 QANELPGAPSQEEA-VIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPL 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +L+ GRE +R++DV I R+R+ E P P I T+ G GY F D Sbjct: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + LK + +V A DG E + + +++++DI LP +GL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE +NV ++ LT + +++DKILGL+ GADDYITKPFN E+ R + +L R Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN--- 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +++++ + K ++D +SRSL D ++ L EF + NPGK+ SR Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIAD-KEINLTAKEFDLLEILAVNPGKVYSRDN 188 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LLK + G++ RTVDV +RR+R+ E+ P P+ + T G GY F Sbjct: 189 LLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 1/233 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L+RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ V+ + F+GWEL R+L+ P G L +EFR + F + P ++ Sbjct: 149 RSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRL 208 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +L+++ GR + +R++D+ + R+R+ PD P +I T+ G GY F Sbjct: 209 FSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 11/236 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+ILIVED+ ++ E E + DG +I E +L+++D+ LP +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 63 LLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +R+Q + ++ LT + E+D+I+GL GADDY+ KPF+PREL R R LL Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG---EQYKLPRSEFRAMLHFCENP 176 R + G + Y+ N +++D++ G E+ +L EF + F P Sbjct: 131 RQLRQGQP-----VGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 G++ +R +L++K+ G + +R VD IRR+RK E P P I T+ G GY+F Sbjct: 186 GRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 2/234 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILI +DE + ++ E EGY V +A DG E I+ I+LV++DI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R + ++ ++FL+ + ++ DK+ GL +GADDY+TKPF P EL R L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + L + S + + G +D R+ + GEQ +L EF + +P K+ Sbjct: 121 FLTLNQ-PKVAESKSALEVGGVVIDPERRT-VDVYGEQIELTPKEFDILYLLASHPKKVY 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + + +++ + TV V IR +RK ++I T+ G GY F G Sbjct: 179 NVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP Sbjct: 1 MSNE-ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL R Sbjct: 60 DGIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T + E + + +F E+D ++ ++ D ++ L E+ +++ + P K+ Sbjct: 120 TQSTTVEQSEPHARDVIEFKHLEIDNDAHRVLA-DNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEI-IATIHGEGYRF 232 R +LLK++ E RTVD ++R+R+ I T+ G GY+F Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKF 231 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 8/235 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R + E GY+V EA G + +L+E+ +LV++D+ LPG + Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GLLLARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + +RE ++ LT + + DKI+GLE+GADDY+ KPFNP EL R + +L R Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 Y + LD + L+ + ++ +L +E+ + F ENPGK Sbjct: 124 RDRYEA------GRTGYTYGSLHLDTAANKLL-KNNQEVELTPTEYSLLKMFMENPGKAL 176 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+L + G + +T+DV IRR+R+ E P P I TI G GYR+ + Sbjct: 177 RREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 3/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +IL+V+DE + ++ + EG+ ++++ +G + + + + L I+D+ LP +G Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +RE N ++ LT ++ E+DKI GL +GADDYITKPF P EL R + L R Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +V E + F+G LD+++ + ++ L EF + C N G++ S E Sbjct: 124 NSV-EPNQEEHLIAFSGLILDMDTHE-CTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 185 LLKKMTGRELKPHD-RTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 L ++ G + + TV V IR +R+ + + P+ I T+ G GY+ Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++ Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR- 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G + + V F G+ LD R L+ PDG Q L +EF + C PG++ S Sbjct: 135 -GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLS 193 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 R +LL GR P +R++DV + RIR+ E PE+I TI GY F ++ Sbjct: 194 RDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEV 248 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 2/231 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T +L+V+DE L EG+ TDG + + +++DI LP +G Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + + LR + + +M ++ + +E DK+L LE+GADDY+TKPF+PREL R + +L RT Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E Y + L + D E L E+ +L+ ++P + Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHE-VYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R LL+++ G + R VDV I ++R+ E P P+ I TI G GY+F Sbjct: 188 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 306 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ + E +D DG E EY NL+++D+ LPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + RE+R+ + + ++ L+ + DK+LGLE+GADDY+ KPF+ +EL R + +L Sbjct: 61 IDGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKF---NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R + + SE+ + E F ++ ++ S+ G+ ++P E +P Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYF-GDSIEMPPKELELFYFLASHP 179 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ +R +LL + G E RTVDV I+R+R+ + ++T+ G GY+F Sbjct: 180 NQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKF 233 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + L+ E + + V A++ E + + ++ +I+DI +PG+ Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R +++V ++FL+ R +VDKI GL +G DDYI K +P E+ R + +L R Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + S + + +F L++ +R L DG+ L E+ + F E+P + Sbjct: 121 S-----ASNQPPTETILEFGHLTLNLTTREL-AVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S +LL K+ + TV V + R+R+ E+ P+ P+ I + G GYRF G Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 124/234 (52%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + F GW LD+ R L D L EF +L F E+ ++ +R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +LL G DR++DV + R+R E P P +I T+ GY F + Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTPVV 234 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 16/238 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE---------YDINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 R LL R+ N + + ++ G +L + D + L EFR + F Sbjct: 145 RALLRRSQN-----QPAETPAVLRYEGLKLFPEECR-VLLDDRELTLSPKEFRLLELFMR 198 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ SR +LL+K+ G + +T+DV IR +R+ E+ P P + T+ G GYR Sbjct: 199 HPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 128/240 (53%), Gaps = 6/240 (2%) Query: 1 MQTP---HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL 57 M P HILIVED+ + L + + G++ GA M +++ +L+++D L Sbjct: 7 MAAPNQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML 66 Query: 58 PGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 PG++G + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++ Sbjct: 67 PGEDGFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSI 126 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R E ++ F+GW +D SR L DG Q + +EF +L FC NP Sbjct: 127 LRRASYAHHQEE---ALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPN 183 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 K+ +R +LL P +R++D I R+R+ E P I T+ GY F +E Sbjct: 184 KVLTREQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVE 243 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 4/237 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILI ED+ + EGY + +A DG E +++ I+LVI+DI +P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +REQ + ++FL+ + ++ DKI GL +GADDY+TKPFNP EL R L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 120 RTMNLGTV-SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R L + + + G +D R++ + L EF + +P K Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDR-IDLTPKEFDILYLLASHPKK 181 Query: 179 IQSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + S + +++ G TV V IR +RK + I T+ G GY F G Sbjct: 182 VFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T +L+V+DE ++ + + E Y++ A +G + + +LVI+D+ LP + Sbjct: 3 RTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLID 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +RE + V ++ L+ + +DK +G +GADDY+ KPF+P EL +R + LL R+ Sbjct: 63 GYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + R E++ S + G+ L EF + E+P ++ + Sbjct: 123 FDKEQSVSKVRKTTKISKGELEINCESHEVF-VRGKPVYLTPKEFELLTFMAEHPDQVFT 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +L M E T+ V IR++R+ E P P+ I T+ G GY+F Sbjct: 182 REQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 135/237 (56%), Gaps = 3/237 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT G ++ +F GW LD ++R L+ PDG L +E+R + F +NP ++ Sbjct: 121 RTE--GGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ELL++ GR P+DR++DV I R+R P++I T+ G+GY D+ Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIV+DE R + E + EA +G E QIL ++++++D+ +P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +REQ++V ++FLT R +E DK+ GL++G DDYI KPF+P EL R ++ R Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ E F +D R + DG+ L EF +L ++ G++ Sbjct: 121 AYH------NKQKNEDLSFGPLVIDERGRK-VTVDGDPVVLTLKEFDLLLFLAKHHGQVF 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL ++ G + + RTVD I+ +R + D I T+ G GY+F Sbjct: 174 SREDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKF 222 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 6/238 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE + +K + E EGY + +A E ++ ++L+++D+ + G Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G +RE ++ + FLT R ++ DK+ G +GADDYITKPFNP EL R R L Sbjct: 61 MSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT S+E S ++Y ++ + + LI GE + + +FCE+P + Sbjct: 121 RTYQ----SKETSSNQTYTYDYFTFSPQNAELI-VGGEAVACSAQLLQLLQYFCEHPNVV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 S+ ++ +K+ G + TV V IR++R+ E P PE I T+ G GYRF + E Sbjct: 176 LSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 233 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +ILIV+DE + ++ + EG+ V++ G E + + ++++ I+DI LP +G Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+ ++ LT + ++DKI+GL IGADDYITKPFNP E+ R + L R M Sbjct: 62 FHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYM 121 Query: 123 NLGTVSEERR-SVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 E++ V Y G ++ + G++ L EF + + CE+ GK+ Sbjct: 122 RYNNSYEQQSIIVNEYDIKGLIINKETHK-CSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 EL + + G + ++ TV I R+R+ P+ I T+ G GY Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIVED++ N +K EGYD+ +A G E + + ++VIMDI +P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ R +RE++ V ++ L+ + + DKI+GL +GADDYI KPF+ EL R + + R Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + + Y++ + D+N+ + + G++ L E + + F ENP ++ Sbjct: 121 AIYYNETKSIKEN-KIYEYGDVKFDMNNYT-VTKGGKELTLTAKEMKILKLFFENPNRVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ ++ + G E TV V +RR+R E P+ P++I T+ G GY+ GD Sbjct: 179 TKVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT- 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N S + FN +D+N R I D E+ +L EF + G+ SR Sbjct: 133 NKAAFSSHLTTSGIINFNFLTIDLNKRQ-IYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 183 AELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 A++L+++ G E R VDV I R+R E+ P P++I T G GY F Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ++LIVEDE N +K +D G E L E + VI+D++LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R++RE +NVA++ L+ R ++ DK+LGL GADDY+TKPF+ EL R L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ + + ++ L D + L EF + +N ++ Sbjct: 121 QDRWLQDHDVQK--DVLHIDNIIINKQEY-LFLRDNKPIPLSAKEFELLFFLAKNRNQVF 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S+++LL + G + + T+ V IRRIR+ E P P + T+ G GY+F Sbjct: 178 SKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFS 230 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+GL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + G L + + + +G+ +L +EF+ + +NPG+ +R +L Sbjct: 127 NNNPNSGQINV---AGVVLHV-AHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDL 182 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 + + G++ DR++DV I ++R F+ PD I T+ G GY F + Sbjct: 183 MTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E+ + F+G ++ N R ++ DG+ L EF +L E PG++ S+ Sbjct: 133 RYNGLKEQEK---VLSFDGLTINTN-RRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L ++ ++ RTV V I+ +R+ P I T+ G GY+F G Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R + N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 TM S+ + F +D S + + GE L EF ++ N G Sbjct: 191 TMPRSEASD-----GTMTFGELTIDTASHT-VRVAGEDVSLTPKEFDLLVFLASNKGIAL 244 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR ++L+K+ + DRTVD ++ +R H IAT+ G GY+F D Sbjct: 245 SREKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPD 296 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 1/233 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + +Y+F+GWEL++ +R L P G +L EF + F PG++ SR Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRD 186 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +LL+ + +DR++DV I R+R+ E P P I T+ G GY + Sbjct: 187 QLLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPV 238 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 11/234 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK-LPRSEFRAMLHFCENPGKIQSRA 183 G + +E+ F ++ +R + +GE + L EF + + +NP ++ SR Sbjct: 122 GKAVIDEDMIETECF---TINKKTRE-VLLNGEPVENLTPKEFDLLYYLVQNPRQVFSRE 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHF--ESTPDTPEIIATIHGEGYRFCGD 235 +LL+++ G + +RTVDV I+R+RK E P + T+ G GY+F D Sbjct: 178 QLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKFDED 227 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++ Sbjct: 3 NNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGED 62 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L Sbjct: 63 GLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R L + + F W+LD +R L+ G L +E+R + F ++P ++ Sbjct: 123 RARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRV 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R +LL GR+ P DR++D+ I R+R+ + P I T+ EGY F + Sbjct: 183 LTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 7/234 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P ILIV+DE ++ E EG+ ++ A + + + +L I+D+ LP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G L +++R Q+N+ ++FL+ + EVDK+LGL IG DDYITKPF+P+E+ R + L Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + E +V ++ N E + + +GE+ +L E + F NP +I Sbjct: 121 RVSMMEAPVAETTTVGPFQMNEDE------TEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S+ L ++ G D TV V IRR+R+ E P P I T+ G GYR Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 2/232 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + ILI++DE + +K +G+ V AT+G+ ++ + ++ +L+I+D+ LP Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL L + LR+ ++FL+ + ++DKILGL +G DDYITKPF+P EL R L R Sbjct: 61 NGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + + G +D + +L D + L EF + ++P + Sbjct: 121 NRILTNQT-NSADLSILNIAGLTIDFANYTLY-VDDKPVVLTVKEFEILSLLSQHPNMVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S +L + G + RTV V I +RK E P P++I TI G GY+ Sbjct: 179 SLTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T IL+V+DE R+ L+ E EG+ V EA DG + +LV++D+ +P Sbjct: 1 MST--ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G R +++ ++ LT + + DKILGLE+GADDY+TKPFN REL R R +L R Sbjct: 59 GGYEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T + + LD R+ + G L SEF + PG++ Sbjct: 119 TQQTPLEP------DVLRAADIVLDRTGRT-VRVGGRYVDLTPSEFAILATLMAAPGQVF 171 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +LL +++G + +RT+DV IR +R E+ P P+ I T++G GYRF Sbjct: 172 SRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 129/237 (54%), Gaps = 3/237 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 +ER + +FNGW LD R L P + EF +L FC NPG++ S Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLS 201 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R ELL P +R+VDV + RIR+ E P ++ T+ GY F +E+ Sbjct: 202 REELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEE 258 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 1/235 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVG 146 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 T E S Y+F GW L+ + R L+ P G + L E+ +L + P ++ +R Sbjct: 147 ENETPGRES-SARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + GR+ P DR +DV I R+R+ E +II T+ G GY +E Sbjct: 206 DMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPVE 260 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P +GL Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT + Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E ++ +DI R+ + G+ L R EF + F N K+ SR + Sbjct: 127 SKEQEA-----TFDVGILSIDIEGRA-VSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQ 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL ++ G E + RTVD I+ +R I T+ G GY+F Sbjct: 181 LLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEA 227 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ DG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R + Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + +E+ +D+ R ++ +GE LP EF + + N G++ +R +L Sbjct: 124 DAGADDGVLEA---GPVRMDVE-RHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + ++ G + +T+DV ++R+R E P P + T+ G GY+ G Sbjct: 180 IDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 1/227 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + L Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S + ++ +F ++ + ++ G++ KL E+ +L N G + S + Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFL-GKELKLTPIEYEILLLLANNLGTVFSAED 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 + K++ + + TV V I R+R+ E P P+II T+ G GY+ Sbjct: 182 IFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 10/235 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R + V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + R + + + + +D +S + D E LP EF + +NP Sbjct: 121 IRRDQDF------KDKDKILEKGDLTVDAHSYKVFVKDNE-VDLPPKEFELLYLLIKNPE 173 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ +R E+L+K+ G RTVD ++RIRK E +I T+ G GY+F Sbjct: 174 RVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 7/236 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M IL+V+DE + +K+ E +G+DV A DG I S +I+L+++D+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++V ++ LT + E +KI G+ +GADDY+TKPF+ REL +R R LL Sbjct: 61 MTGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDIN-SRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R + + FN +L+++ + ++ G L +EF+ + F NP + Sbjct: 121 RAYRDFSP-----MADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQ 175 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + SR +L++K G + DRTVD I+ IR+ ES P I T++G GY+F Sbjct: 176 VFSREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 10/237 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +I++ +DE + + E EG++V+ A +G E ++ E+ +L+++D+ +P +GL Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R+ + ++ LT R E D++LGL +GADDY+TKPF+PREL +R N+L R Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 125 GTVSEERRSVESYK---------FNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 S R E G + R + +L EF + Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERR-VSVLESDVELTVKEFDLLHLLAMY 182 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 PGK+ SR++LL ++ TV V +RR+R+ E P P I T+ G GY+ Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 3/232 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 TMN-LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 L VS + + G EL+ +++ +I DGE K+ EF+ + +NPG++ Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVI-LDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S E+ +K+ E D TV V +R IR+ E P+ + + G GY+ Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 131/237 (55%), Gaps = 5/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + E EGY V A DG + Q+ + ++VIMDI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +++++ + +V ++ L+ +D+ VDKI+G ++G DDY TKPF+P EL +R + +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + E++ + + + ++ ++R L+ G++ L EF + +P +I Sbjct: 121 SKAV----PEKKGKDVLDYQNFYIEYSTR-LVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR +LL+++ + + TV V IRR+R+ E PE+I T+ G GY+F E Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG + Sbjct: 3 KAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL R Sbjct: 63 GWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRR 122 Query: 122 MNLGTV---SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 + ++E + F L R + GE L E+ +L+ +N G+ Sbjct: 123 SSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAV-VKGETLSLSPLEYDLLLYLAQNAGR 181 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRF 232 + SR LL ++ G E RTVD +RR+R+ +P + T+ G GY+F Sbjct: 182 VLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 9/245 (3%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M++ HI +++DE+ L + ++ G+ V + +G + ++ +LV++D+ LPG Sbjct: 1 MKSAFHIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G +AR +RE L+ +TGR + VDK++GLE+GADDY+TKPF+ REL R + +L Sbjct: 61 EDGFSIARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLR 120 Query: 120 R--------TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLH 171 R + + S + +F GW+LD+ +RSL P G+ L EF + Sbjct: 121 RLAPDDAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCA 180 Query: 172 FCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 F +PG++ SR LL++ GRE P DRT+DV + R+RK E+ PD P+I+ ++ G GY Sbjct: 181 FARHPGRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYI 240 Query: 232 FCGDL 236 + Sbjct: 241 LVPPV 245 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 1/237 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + IL+ +D+ + E + V A G M QIL + I++V++D+ LP Sbjct: 1 MSSEGQILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L Sbjct: 61 EDGLQLCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +L + SY F+GW +D SR+L P G + L E + F +P ++ Sbjct: 121 RARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ++L G++ +P RT+D+ + R+RK P +I T+ GY FC + Sbjct: 181 LSRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFCSRV 237 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 150/235 (63%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+G Sbjct: 8 MPHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 68 LTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++F GW L+ + R L+ PDG +LP+ EF+ ++ + G++ SR Sbjct: 128 QCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLSR 187 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +L+ + RE P+DRTVDV + R+R+ + P P +I T HG GY F G+L+ Sbjct: 188 DQLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFAGELD 242 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 131/233 (56%), Gaps = 5/233 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IL+V+DE + E Y V +G + +I+ + ++ VIMD+ LP +G Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R+ + ++ LT + ++VDKILGLE+GADDYITKPF+P+EL R + +L RT Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++E ++++ +D R ++ + E+ +L +EF+ + + +N ++ S Sbjct: 122 DRAINLAEIDPTLQA---ENIAIDF-KRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R ++L+K+ G E R VD+ I +R E+ P P++I TI G GY F Sbjct: 178 RDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE ++ + GYDV +DG + ++L + +L+++D+ LP +G Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + RELR+Q+N V ++ LT + DKI GL+ GADDY+TKPF+P+EL R + + R Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 L +E ++ + R + DG +L EF +L C++ GK+ S Sbjct: 122 QTLPGQAE----STTFDIGRLTVRAEQRE-VLIDGRTIELTPKEFELLLFLCKHRGKVLS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R +LL + R VDV I +R E TPE I T+ GY+ Sbjct: 177 RQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHA 229 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +LI++DE +K++ EG V A+ + + + +LVI+DI LP G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++R+ ++V ++FL+ + E DKI+GL IG DDYITKPF+P+E+ R + L R Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L + ++ K +EL+ L + +L E M +F ++P ++ S+ Sbjct: 159 L----QPSQTGTIIKKGPFELNQQQAEL-TKNEAAIELTPKELMLMTYFLQHPNRVISKE 213 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L + + G + D TV V IRR+R+ E+TP P+ + T+ G GY+F Sbjct: 214 TLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE +K + EG+ +V A+ E I+ + ++L+++D+ +PG Sbjct: 1 MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + G ++ E+R N + FLT + +++DK+ G GADDYITKPFNP EL R + L Sbjct: 61 QTGFDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT V+ S +Y++ + + LI DGE + + +FC++P ++ Sbjct: 121 RTYIHKEVAAASVSS-AYEYERFIFHPDFAELI-VDGETVSCSAQLLQLLQYFCDHPNRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S+ ++ +K+ G TV V IR++R+ E P +PE I TI G GY+F Sbjct: 179 LSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVP 233 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 14/243 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VEDE + EGY+V T G E E D +L+I+D+ LPG +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 LLLARELREQA--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS- 119 L + R++R + ++ ++ LT + +E++KI+GLE+GADDY+TKPF+PREL R + L Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 120 RTMNLGTVSEERRSVESY----------KFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + S + + K + + ++ +L EF + Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAY-IENQELQLTPKEFELL 179 Query: 170 LHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEG 229 N G++ +R +LL+K+ G + RTVDV IR +R+ P+++ T+ G G Sbjct: 180 NIMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIG 239 Query: 230 YRF 232 YR Sbjct: 240 YRL 242 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP + Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT Sbjct: 64 GEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N G + + ++D+ D E +L +EF+ + F +N GK+ S Sbjct: 124 NNEGLKA----HLIELNGGDLKVDLRDMETWKKD-ELVELTATEFKLLSIFIQNSGKVFS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R EL+ K+ G + +DRT+DV I+ +R E + + I T++G GYRF Sbjct: 179 RDELVVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRFV 228 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 3/231 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+VED+ + L+ G+ V DG + +L+++DI LPG +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 64 LLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR E+ ++ +T + EVDK+LGLE+GADDYITKPF+ RE+ R + L R Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ + + ++ R + +GE L EF +L F +PG+ SR Sbjct: 127 -VDQETQGQADDTPIELGKVVVEPEKRK-VTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ELL ++ G + + TV+ I R+R E P P + T+ G GYRF Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFA 235 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+DE L+ + +DV AT+GA+ ++ ++V++D+ LP +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +R ++ + ++ LT +D E DK+ GLE+GADDY+ KPF+PRE+ R +L R Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 122 MNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 +++ +S + + +D + + + KL EF M + + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYK-VSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ++ SR +LL+ + G + R VD+ I +R+ E P P+ + TI G GY F + Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGD 239 Query: 238 D 238 D Sbjct: 240 D 240 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 17/239 (7%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL----------SEYDINLVIMD 54 +IL++EDE + R T+ + EGY A+DG E ++ + ++ L+I+D Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 55 INLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIR 113 + LPG NGL L R +R Q V ++ ++ + +E+D+++GLEIGADDY+ KPF RE+ R Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 114 ARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFC 173 R LL RT ++ +F L GE+ L E++ + F Sbjct: 143 CRALLRRTRI-----QQATLPPVLRFRDLCLYPQECRATLR-GEELNLSPKEYKLLELFM 196 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ R +LL ++ G + +TVDV IR +R+ E+ P P+ I T+ G GYRF Sbjct: 197 RHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LIV+DE ++ EAEGY V A DG + L ++ V++D+ +PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE +V ++FLT R + DKI GL +GADD+I K P E+ R + +L Sbjct: 61 PSGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R F +D+ + + DG+ +L EF + F E+P ++ Sbjct: 121 RYRRGEPAPRA-----VLDFGRLVIDVQAHE-VRVDGKPVQLTAREFELLQLFAEHPRQV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +R +L +++ G TV V I R+R+ E P P I T+ G GYRF G+ Sbjct: 175 FTREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGE 228 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++ ILIVED+ + EGY DGA + L + LVI+DI LP Sbjct: 2 VEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKV 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +++RE+ N ++ L+ + E DKI+GL +GADDY+ KPF ELT R + L R Sbjct: 62 GGYEVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRR 121 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +N +++R + + E+++++ + L EF + F +NP K+ Sbjct: 122 YLNFSWETDKR--TQIIRHMNIEMNVDTYE-VKVGDNSVTLTAKEFEILKLFLQNPRKVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ +L K + G + TV V IRR+R+ E P P I TI G GY+ + Sbjct: 179 TKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 3/233 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 64 LLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR+ + ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R + Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQV 140 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + VE F W LD+++R+L +G+ L EF + ++P + +R Sbjct: 141 R-EVPGAPSQQVEVVSFGSWALDLSTRTLTR-EGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L+ GRE +R++DV + R+R+ E P I T+ G GY F D Sbjct: 199 DKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 9/227 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + EGY+ +DG + ++V++D+ LPG+NGL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R Q+ V ++ LT + + +D + GLE GADDY+TKPF P EL R R L R Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E E+ ++D+ + + DG L EF ++ P ++ +R Sbjct: 133 ----GETGQAENLSIGDVQIDVPAHQ-VTRDGVPIALTPLEFDLLVALARKPRQVFTREL 187 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 LL+++ G R V+V ++R+R E P+ PEI+ T+ G GY+ Sbjct: 188 LLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 5/229 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LIVEDE + L + EG++ TDG ++V++D+ LPG +G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R G Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR----G 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + S + +D+ R ++ +G+ LP EF + + N G++ +R +L Sbjct: 120 GDDDSEMSDGVLESGPVRMDVE-RHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQL 178 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + ++ G + +T+DV ++R+R E+ P P + T+ G GY+ G Sbjct: 179 IDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP + Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + G + E E+ ++ ++ +GE L R+EFR + P ++ S Sbjct: 137 RSAGGPAG-----EVIDIQDLEIRPDA-GVVRRNGEALHLTRTEFRLLCELASAPDRVYS 190 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 R +LL+++ G + R VDV +RR+R E P P I+ T+ G GY+ Sbjct: 191 REQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYK 240 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+DE R L +G+ + EA A +L ++ ++DI +PG++GL Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E ++ ++ LT R D+I+GLEIGADDY+TKPF PREL R R++L R Sbjct: 72 LTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V E Y F GW+LD R L PDG + +EFR + F ++P K+ R Sbjct: 132 PAVDAEDA---FYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDR 188 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + GRE DR VD + R+R+ E+ P I T+ G GYRF D+ Sbjct: 189 LLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADV 240 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 4/233 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + T + + ++D N R + + E+ +L EF + G+ S Sbjct: 124 DKI-TTNLGVPNSGIISIGFLKIDTNKRQ-VYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 182 RAELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 RA +L+++ G E R VDV I R+R E P P++I T G GY F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ + T++ E G+ A DG E ++ + +LV++D LPG Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+ + ++ LT R E ++ L GADDY+ KPF+ +EL R + LL Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R G + NG +D N+R + G L EF + ++PG++ Sbjct: 129 RAYASGYRDCSPK-------NGLLVDRNTRQ-VQLHGRPIDLRAREFDLLAQLADHPGRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR ELL+++ G + + RT+DV +R++R+ E P P + T+ G GY+F G Sbjct: 181 YSRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 T S + E+ S ++ GEQ L EF + F + P ++ S Sbjct: 123 RRNSTPPPL-----SLTWGDLEIWPESY-MVTIKGEQVTLTGKEFELLHIFMKRPNQVFS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R LL+K+ G + RTVDV I +R + II ++ G GYR Sbjct: 177 REYLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLA 225 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 9/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG Sbjct: 1 MQ-PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 60 DGMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S +F E+D ++R G+ +L +EF ++ N ++ Sbjct: 120 RRGKPVKSS------VMRFTHVEIDPDAREARAA-GQLLELTPTEFDLLIALARNHNRVL 172 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +L++K+ G + DR VDV + ++R+ E+ +I T G GYRF Sbjct: 173 SREDLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 2/231 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+D+ + GYDV A DG + +IL + VI+D+ +P +G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR+Q+++ ++ LT E D+I+GLE+GADDY+ K F+ REL R R + R Sbjct: 70 FEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 123 -NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ + + + E+ + +R+ G+ L E+ +L + P ++ S Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAY-LSGKPLNLTPLEYDLLLTLAKFPARVLS 188 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL + GR DR+VDV I +R+ P P I T+ GY F Sbjct: 189 RDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 296 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 126/233 (54%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRAD 147 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +F W L+ R L+ + L +EFR +L F E+P ++ R Sbjct: 148 VRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDREM 207 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L+ GR+L DR++D+ + R+R+ P +I T+ GEGY F G +E Sbjct: 208 LINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFTGTVE 260 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 296 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +E + +D +R+ G L EF + PG+ +R E Sbjct: 177 VPGAE----AGVLRAGTLVVDAAARTATR-HGVPLGLTVREFDLLAFLLRRPGRAFTRGE 231 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL+ + G TV V IRR+R+ E P P ++ T+ G GYR+ Sbjct: 232 LLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 296 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 2/230 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + ILI++DE + L+ + E Y V++ + + DI+L I+DI LP NG Sbjct: 19 SEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + +R++ ++ LT + E DKI GL +GADDY+TKPF P E+ R + L R Sbjct: 79 FSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +N L++ + + DGE L +EF + + G + S Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHECL-LDGELVSLTPTEFSILHVLLSSAGNVVSI 197 Query: 183 AELLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL + E + T+ V IR +R+ T DTP+ I TI G GY+ Sbjct: 198 EELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 7/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED+ +K E E + V DG + E LV++D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++R + V ++ ++ + + DK+ +GADDY+TKPF+P ELT R + + R Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 E+R +F E+DI R + GEQ L EF +L +PG++ ++ EL Sbjct: 123 PQQEDR-----LQFIDVEIDIKGRRVFAR-GEQISLTAKEFELLLFLANHPGRVFTKEEL 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + + RTV V ++ +R + P+ I T+ G GY+F G Sbjct: 177 YAAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 132/231 (57%), Gaps = 2/231 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NG Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + S ++ +F+ +E + R+L D ++ L EF + F EN + S Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEFSLLKVFIENANQPLS 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R ++++ G+EL DR++DV I RIRK E P+ P+ + T G GY F Sbjct: 181 RDQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 2/231 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIV+D+ + + EG+ V A +G E +I++ I L I+DI +P Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L R +RE+ ++ +MFL+ + ++VDK++G GADDYI KPF+ E R + L R Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + G E+D SR+++ GE L ++E+ + ++ Sbjct: 136 YTYFNQ-NAVQVIEKKISIRGLEIDEVSRTVMLY-GETINLTKTEYDILYLMAAAENRVF 193 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 + E+ + + + TV V I R+R E P P+ I + G GY+ Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+ +D R L+ + EGY+V EA DG E+ Q+ I+L+++DI +P Sbjct: 1 MQT-RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +LRE +NV ++FLT + + DK LG GADDY+ KPF+ ELT R + LL R Sbjct: 59 NGYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 Query: 121 TMNLGTVSEER--RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 EE + + +G L ++ +G++ +L EF + +NP + Sbjct: 119 YQVYKGKKEETLLDTEKDLSMDGLTLRYAQQNA-EVNGKEVELTDIEFNILSTLMKNPKQ 177 Query: 179 IQSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 I S +L +K + T+ V IR +RK E P P I TI G+GYRF Sbjct: 178 IFSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 5/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ V TL FE G+ V A+DG ++ +L+I+D+ LPG +G + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R + ++ V ++ LT +E +I GLE+GA DY+ KPF+ EL R R +L Sbjct: 64 CRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR----WN 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + S +LD NSR + D + +L EF + N G SR L Sbjct: 120 ERQRQTPSSNVLCVGPVQLDRNSRRVWYKD-REIELSHKEFDLLACLMHNAGVALSRDLL 178 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L+++ G + +RT+DV +R +R+ E P P +I T+ G GY F Sbjct: 179 LERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 4/230 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++ + E + V++ D E + + +++L ++DI +P +G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L +++RE+ N ++ LT + E+DKI GL +GADDYITKPF P E+ R + L R Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ E + G L+ + + L +EF + CE G + S Sbjct: 190 RYNMGT--VKAEEILEHKGLILNKKTHECF-LNERLLSLTPTEFSILAILCEQKGNVVSA 246 Query: 183 AELLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL ++ E + T+ V IR +R+ E + + P+ I T+ G GY+ Sbjct: 247 EELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 2/238 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT L + + + F W+LD +R LI DG L +E+R + F ++P ++ Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R +LL GRE + +R++D+ + R+R+H P I T+ EGY F +E Sbjct: 184 LNRDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVFSTPVE 241 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ T L+ AEG+ V +A+DG E + +LVI+D+ +P +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R + V ++ LT R + VDK++G +GADDY+TKPF+ EL +R +L R Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM--- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + +F E++ ++R++ D +L EF + +PG +R Sbjct: 123 ----PTLPESRTLRFGHLEINKSTRTVHVGDRNP-ELTPREFDLLWLMASHPGHPFTRES 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL ++ + TV V IRR+R+ E P P I T+ G GY+F Sbjct: 178 LLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 134/233 (57%), Gaps = 3/233 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++DEL R+ + + + EG+ V A +G L+ + +LV++D+ LP +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E+ +Q+N+ ++ ++ +D +DK+LGLE+GA+DYITKPF+ REL R + +L R Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E + E++ +++ ++ +G Q L E+ + + P KI +R Sbjct: 121 HNDEAKYEYTT--KLVCGELEINPDTK-VVQKNGTQILLTAKEYGILETLFKRPKKIFTR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ELL+ + G + R+VD+TI R+RK E +TP+ + TI+G GY+ GD Sbjct: 178 DELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGD 230 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VEDE+ + S E GY+V A DG + E D ++VI+D+ LPG +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-TMNLG 125 R LR ++ ++ LT R +EVD ++GL +GADDY+TKPF+PREL R + +L R G Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++ + F +D+ +R + D E L R+EF + E P + SR +L Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRD-ELVPLTRTEFDLLATLAERPRLVFSRRQL 245 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + ++ G + + VDV I +R+ + + + T+ G GYR E Sbjct: 246 IDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTGEE 297 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 7/233 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R LK+ E + + A+DG E ++E++ +L+I+D+ LP +G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R+ ++ LT + E DK+ G GADDY+ KPF+ REL R + +L R+ Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E + Y+ ++ N R + +G L R+EF ++ NPG++ +R Sbjct: 122 QKAEKAE----IFVYQDGRLKIHPN-RMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L KK+ G E K +DRT+D I+ IRK + ++I T++G GY+F GD Sbjct: 177 EQLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + + LD +SR + G KL SEF + P ++ SR EL Sbjct: 123 --NTPQEESKRITEGPIILDEDSRE-VSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNEL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L G + + +DRT+D IR +RK + E I +I+G GY+F Sbjct: 180 LDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 129/237 (54%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + V + Y+F + LD SR L D ++ L +++ ++ F +PG + Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKE-SLSGADYNLLMLFLTHPGAVL 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R + + GR+ P DR +DV + R+R+ P++I TI G+GY +E Sbjct: 182 TRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++DE R L+S + EG++VFEA +G E + + +L+++DI +P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R ++A ++ LT + + DKI+GLE+GADDYITKPFN RE+ R R +L R+ Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA- 123 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + + L+ ++ +L+ + L SEF + +PG + SR +L Sbjct: 124 -----QPQADVLRIGEIVLERSACTLM-VGEQTVDLTPSEFEILATLMASPGHVFSRLDL 177 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L + +G+ + ++RT+DV IR +R E P P I T++G GYRF Sbjct: 178 LDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 3/238 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LI+ED+ N +K G D A DG + + +++I+D+ LP Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR+ V ++ LT R E DK+ L GADDYITKPF+ RELT R + Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S S +++ F+G LD + + ++ ++ EF + F +NPG+ Sbjct: 121 RYRPEKEPS-FINSKKTFLFDGLCLDTENHK-VTLASKEIEITAKEFDLLSLFMKNPGRT 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR ELL + G ++ TV+ I R+R E P P+ I T+ G GY+F L+ Sbjct: 179 YSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQLK 236 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR--- 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V + + ++ + D L +EF+ +L ENPG++ SR + Sbjct: 122 ----PHEQVTNVSISNLSINPERLEALIGD-TLLALTPTEFKILLLLAENPGQVFSRLHI 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L+++ G + ++RT+D I +R E+T + I T++G GY+ + Sbjct: 177 LERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 4/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG +GL Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V E+ +V + G +++N+ + +Q L +EF + CEN G + S Sbjct: 124 SGVKEQNENVIVHS--GLVINVNTHE-CYLNEKQLSLTPTEFSILRILCENKGNVVSSEL 180 Query: 185 LLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 L ++ G E + T+ V IR +R+ T D P+ I T+ G GY+ Sbjct: 181 LFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 2/231 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVEDE+ + ++EG+ V A DG + + NL I+DI LP +G Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R + + ++ LT +DN++DK++ +GADDYI KPF+ ELT R + +L RT Sbjct: 63 VLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGT 122 Query: 125 GTVSEERRSVES-YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++E + E+ E++ ++ + + G L EF + + E P ++ + A Sbjct: 123 HHITENQVGKETILHCGSLEINCDT-TEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ + + G+E D TV V I R+R E P P+ + T+ G GYR Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVC 232 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDI-NLVIMDINLPGKN 61 T ILI++D+ + L+ FE +V A G + + ++ ++V++DI LP + Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G +++R + V ++ LT R+++ D+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 62 GFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRA 121 Query: 122 MNLGTVSE-ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + S + F E+D R ++ G + + E + + G Sbjct: 122 TASAEAAPVSSPSACAMVFGSVEIDFAGR-VLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL +GR+ + DR++DV I RIRK E P P I T+ G+GY + Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 2/232 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+L + L+ + +V DG + D +L+++D+++P NG+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RELR+ N ++ +T + E+DK+LGLEIGADDYITKPF+ REL RA+ ++ R+ Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + ++ E F ++++ R + +G++ L EF ++ PG+ SR+E Sbjct: 129 NQQTNDSKTAE-LDFGDLKVNVEMRR-VTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + G ++ TV+ I R+R E P I T G GYRF D+ Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 4/239 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 ++T IL+V+DE + L + E + + A +GAE ++ + +++++D+ LP Sbjct: 14 VRTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPD 73 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G L R++R N ++F+T R +++DK+ GL IG DDYITKPFNP E+ R L Sbjct: 74 IDGFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + + F + L S LI + E E + C +P +I Sbjct: 134 RQHMTQEPNNGEKL--NLHFRSFSLYP-SEGLITVNNEPVHCTAKELELLTFLCTHPNRI 190 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 + +L +++ G D+TV + I ++RK E P P I + G GY+F ++ Sbjct: 191 FTAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 4/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 I++VEDE ++ EG+ V DGA + L+ + + +L+++D+ LP +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +R+ ++ LT R E+D++LGLE+GADDY+TKPF+ REL R +L R Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +S +D SR + G+ L EF + NPG++ SR Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSR-GQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL ++ G + DRTVD I R+RK E I T+ G GY++ Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 292 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 3/230 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+ + A G++V A DG + + +L+++DI LPG +G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RELR V ++ +T R EVD + GL +GADDYI KPFNP EL R R+ ++R Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ + K E+ +++ + D ++ R EF + E+P + SR Sbjct: 121 RI--LASVKPEQHVVKSGALEIQLDAYRVF-LDKKEVPFTRREFELLAFLAEHPNIVFSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L +++ G E TV V I RIR+ E P P + TI G GYRF Sbjct: 178 EALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 292 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +G Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + FNG ++ S + +GE+ L E+ +++ N G SR Sbjct: 122 TLNDKN-------ILDFNGLTINKLSHE-VKLNGEELLLSPKEYDLLIYLSSNEGIALSR 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +L + G + RTVD I+R+R+ IAT+ G GY+F Sbjct: 174 DRILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKF 220 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 8/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+VED+ + A G+ V A DG + +L+++D LPG +G Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R + +V ++ LT + ++I GLE GADDYI+KPF+PREL +R +++L R++ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T ++ + LD ++ S++ GE+ L EF + ++PG+ SR + Sbjct: 161 LTPEA------TFTLGEFTLDASAHSIVRA-GEELALTAREFDLLAFLLKHPGQAFSREQ 213 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LLK + G E TV VT+RR+R+ E+ P P I+AT+ G GYR Sbjct: 214 LLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + L E Y+V + DGAE ++L + + + +I+D+ LPG + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R R ++ + R +EV +ILGLE+GADDY+ KPF+ EL R + LL R Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L S R + G +D +R DG + L EF + F +PGK+ Sbjct: 123 VDALARDS--RIDAGTLDVAGLAIDPIAREA-SVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL + G + + ++ TV+ I R+R E+ P P I T+ G GY+ Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 TMNL-----GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 + + G EL+ N++ + DG+ K EF+ + N Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKE-VNIDGKYIKTTPIEFKILSLLMRN 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 G++ S E+ +++ D TV V +R IR+ E P P+ + + G GY+ Sbjct: 180 AGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 135/237 (56%), Gaps = 1/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HILI++D+ + + A +G + Q+L + + +L+I+DI LPG + Sbjct: 9 RKNHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGID 68 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 69 GLDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRT 128 Query: 122 M-NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +L ++ ++ F+ W LD N+ SLI D L + E+ +L F E+PG+I Sbjct: 129 QGDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRIL 188 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R +L+ + ++ DRT+DV I R+RK E P P+++ TI G GY+F ++ Sbjct: 189 NRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFKTKVD 245 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ EDE R+ + + GY+V EA +G E + +++++DI +P +G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 65 LARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + + R + V ++ LT R E DK++GL +GADDYI KPF+P EL R ++LL R Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L + R V + +D+ ++ + G ++ +E+ + HF +N ++ SR Sbjct: 123 LRRRKQPRELVS----GPFRIDLGAKR-VQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRD 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ELL + G +TVDV IRR+R+ E P P+ I T+ G GY++ + Sbjct: 178 ELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 125/234 (53%), Gaps = 1/234 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S + F GW LD+ R L PD E L EF + + G++ Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R ++L + R P DR++DV I ++R+ +II T+ G GY F Sbjct: 181 LTRDQILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVFT 234 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 2/232 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI +DE L E +G+ ++ A +G E QI++ ++++ I+DI +P +G Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R++RE ++ ++ L+ + DKILGL++GADDYITKPFN E+ R + L R Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + E+ + + L+IN+ +L + + L +E++ + + EN GK+ ++ + Sbjct: 123 MSEKEKCEK-QYLECGKLRLNINTCTLY-KENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 + + + D + V I +R E P I TI G GY+ ++ Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSNI 232 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 4/231 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P Sbjct: 1 MNN-NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L R Sbjct: 60 DGFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T L T + + S + + +D + + E L EF + N G++ Sbjct: 120 TYFLNT--KIQVSDDIIRIESMIIDKWKHKITIANNE-VSLTAREFEILYLLATNRGRVF 176 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S E+ +K+ + + TV V + R+R E + +II T+ G GY+ Sbjct: 177 SAEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 LIV+D++ R L + TDG +M Q L++ ++V++D+ LPG++GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 R LR +++ ++ LT R D+I+GLE+GADDY+ KPF PREL R + +L R + Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD--- 149 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELL 186 E + +F+ W L+ R L DG L +EFR + F E P ++ SR +LL Sbjct: 150 --ERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLL 207 Query: 187 KKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GR ++ DR++D+ + R+R+ P P++I T+ GEGY F Sbjct: 208 DAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP Sbjct: 1 MKT--ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKL 58 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + +++RE + +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + Sbjct: 59 DGIAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIER 118 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT E+ S E+ +D + + + L EF +++F K+ Sbjct: 119 RTTQPIEQPVEQAS-ETIVVGDLSVD-ETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKV 176 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 QSR +LL + G + R VD+ + +R+ E P P + T+ G GY+ Sbjct: 177 QSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 5/234 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP ILIVED+ + G DV TDG + + +LV++D+ LPG + Sbjct: 8 QTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSD 67 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + ++ LT R ++D++LGLE+GADDY+ KP PR L R R LL R+ Sbjct: 68 GLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS 127 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N + +R +F +D RS + +GE +E+ + N G+I S Sbjct: 128 ENAPSEEIPQR----LEFGELVIDNGGRS-VTLNGELVDFTSAEYDLLWLLASNAGRILS 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R ++ +++ G E DR++DV I RIR P+ P+ I T+ +GY F + Sbjct: 183 REDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 236 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + L S F+ E + V+ A DG E + L E +++++DI +PG Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R R+ ++ ++FL+ +D+E D+++GL +GADDY+ KPF+ REL R ++ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E V SY+ +D R + L +EF + P ++ Sbjct: 121 RRG-----EVLSQVASYEIRDLFID-KERFEVRRKKAWISLTPTEFSLLDILASAPDRVF 174 Query: 181 SRAELLKK-MTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL+K M G + +RT+D IR +RK E P P I T++G GY+F G Sbjct: 175 SRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 40/265 (15%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE ++ EG+ DG +L+I+D+ +PG +GL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 66 ARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +R+Q + +M LT R E+D+I+GL GADDYI KPF+PREL R R +L R++ Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRS--------LIGPDGEQYK-------------- 160 +Y+ + +D++ R+ + +G + + Sbjct: 123 RGSHQPR-----TTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQN 177 Query: 161 ----------LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRK 210 L EF + F PG++ +R++L+ K+ G + +R VD I R+RK Sbjct: 178 QLEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRK 237 Query: 211 HFESTPDTPEIIATIHGEGYRFCGD 235 E P P + T+ G GYRF + Sbjct: 238 KIEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 124/239 (51%), Gaps = 13/239 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGL 63 HILIV+D L L+ I E EG+ V A G + +LS+ NL+++DI +P +G Sbjct: 4 HILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMSGY 63 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++R + ++ ++FL+ + VDK++G EIGADDYITKPF+ EL R R L R Sbjct: 64 ELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYER 123 Query: 124 LGTVSEERRSVES-------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 + +EE+ E+ KF E+ + S+ + ++ +L EF+ + EN Sbjct: 124 IRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCN-QKIELSTKEFQLLTFLAENA 182 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 G + +R ++ ++ G TV V I+ +R+ E + I T G GY F G+ Sbjct: 183 GIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIGE 237 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + + F W+LD +R L+ G L +E+R + F ++P ++ SR Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL GRE + DR++D+ + R+R+ P I T+ EGY F Sbjct: 186 DQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 12/241 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGK 60 + IL++ED+ + Y+V A G E IL E I+L+I+D+ LP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 61 NGLLLARELR-----EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + +++R + V ++ LT + + D++LGLE+GADDYI+KPF PREL R R Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 +L R + +S F + +S + D + +L +F+ + +F + Sbjct: 122 AVLRRHEQPNQADSQS---DSLTFGRLSVFPDSHE-VTIDDKPVRLTTHQFQLLHYFATH 177 Query: 176 PGKIQSRAELLKKMTGRE-LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GK+ +R +L + M + DR +DV I R+R E P P+ I T+ G GY+F Sbjct: 178 AGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 Query: 235 D 235 D Sbjct: 238 D 238 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 3/226 (1%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VED+ + EG+ + A DG E ++ + +LV++DI LP NG+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 + +RE++N+ ++ ++ +D +VDK LGL GADDYI KPF+ ELT R + + R Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS- 119 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELL 186 +EE + + + +DI++ S + +GE +L +E++ + F NP K+ ++ ++ Sbjct: 120 -AEEPAVNKVIRIHQLAIDIDNVS-VLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 177 Query: 187 KKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + E ++V +RR+R+ E P +P+ I T+ G GY+ Sbjct: 178 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E+++ E + LD+ S L +G+Q ++ EF+ + ++ G++ ++A Sbjct: 132 FS--KGEKQNHEIIQIGDVMLDLVSCKLY-KNGQQKEVTSYEFKILSLLMKHAGRVFTKA 188 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + + G+E + + V I ++R+ E P P + TI G GYRF Sbjct: 189 SIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 1/229 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+L K E ++V TDG + E +L+I+D+ LP +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + + +V ++ ++ + E+DKI GL +GADDYITKPF+P EL R ++ + Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L ++ + G E++ +SR +I + ++ L + EF +LH + P ++ + Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVI-INDKEVNLAQKEFDLLLHMAQYPNRVFGK 179 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL + + G + TV V IRRIR+ E P P+ I T+ G GYR Sbjct: 180 DELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 119/233 (51%), Gaps = 5/233 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR- 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G + E + ES G LD GP+G L EF + + GK+ S Sbjct: 123 ---GQMDAEPMAGESITAGGITLDEARHIAEGPNG-SIDLTPREFELLSALMKVAGKVAS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R +LL++ G E +TVD I+R+R + P II T+ G GYRF Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T ILIV+DE N L+++ + EG+ ++ T G + + +L+++DI LP + Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + ++R+ V + FL+ ++ ++DKILGL IG DDYITKPF+P+E+ + + R Sbjct: 70 GYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ Y+F +D ++ + G L EF +L +NP +I S Sbjct: 130 QY------KEKNPNMYQFGDITID-EAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFS 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +A L + + G +D + V +R +R+ E P P + T+ G GY+ Sbjct: 183 KARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LI+EDE LK+ E EGY V+ + DG ++ + + ++V++D+ LP +G + Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 AR++R++ ++ LT + +E +KI GL IGADDY+ KP +PRE+ R + +L R Sbjct: 70 ARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE- 128 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 R E +D ++ I G + L ++EF + P K+ SR L Sbjct: 129 ---PGRIQQEIITAGEITIDTLAKK-IYLRGTEISLTQTEFDILSTLALYPKKVFSRENL 184 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ G + RT+D I+ +R+ E P P I T+ G GY+F Sbjct: 185 ADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLP 58 M+ IL+V+D+ + ++ +EGY+V +A D IL E DI+L I+DI +P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G +GL + +++RE +++ ++ L+ + ++DKI+GL GADDY+TKPFNP ELT R + L Sbjct: 81 GMDGLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANL 140 Query: 119 SRTM--NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R N G + E + ++ ++R + D ++ KL E+ + NP Sbjct: 141 RRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYD-KEAKLTPIEYDILCLLASNP 199 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 G++ S ++ ++ + + TV V IRR+R+ E +II T+ G GY+ Sbjct: 200 GRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + +E+ + LD R L+ GE+ ++ EF+ + E+P + Sbjct: 121 WKQMKSHAEQTA------ISALVLDKEKR-LVYSFGEEVEVTSKEFQVLSLLSEHPNRAF 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ELL + G + DR VD IRRIRK + P + T+ G GYR Sbjct: 174 SRDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 2/235 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+VED+ R + + G+ DG EM + + +L++MD+ LPG +G Sbjct: 19 APYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + LR+ + V ++ ++ R E+D++LGLE+GADDYI KPF +EL R R +L R Sbjct: 79 FDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR-- 136 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E+ F GW++D+ R L P G L +E+ +L F EN ++ R Sbjct: 137 GPVNEPTAKGKSETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVIGR 196 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ R DR++DV + R+R+ + +I TI G GY F D+E Sbjct: 197 DRLLELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAADVE 251 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 6/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK 60 T +L+V+D+ TRN LK+ E Y+V A DGA + + ++LVI+D+ LP Sbjct: 11 TRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDT 70 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R Sbjct: 71 DGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRR 130 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + V KF G+ +D+ R L P G+ L +F + F E+ G+ Sbjct: 131 MQLGAPGAP----VRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETL 186 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 RA L+++ GR+L P DR++DV + R+R+ P +I T+ G GY F D+ Sbjct: 187 DRARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADV 242 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 68 LEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRAR 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + E LD+++R DG + L EF ++ +PG+ SR Sbjct: 128 -----TSQPAEGEVLTDGALRLDLDARRGT-LDGGELALTGREFDLLVFLLRHPGRAFSR 181 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 AELL+++ G TV V +RR+R+ E P P I T+ G GYR+ Sbjct: 182 AELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRY 230 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 289 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 1 MQT-PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + ILI +D T+ + + + A DG E + + +LVI+D+ +P Sbjct: 1 MSSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +E+R+ +NV ++ LT + E+D+I+GLEIGADDYI KPF+PRE+ R + + Sbjct: 61 IFGTEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R N + R + FN + +D++ I + E+ + E + + N G++ Sbjct: 121 RVGNANIDTNLNRKL--VTFNNFNIDLDKYE-IRLNKEKIDVTPKECQILYLLATNEGRV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR E+L K+ G + R VD I+RIRK + I T++G GY+F Sbjct: 178 LSREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKF 229 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 8/238 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+ + K E+ G V +G++ + + +LV++D+ LPG++GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R N ++ LT R +++D++LGLE+GADDY+ KP PR L R R LL R Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 125 GTVSEERRSVES-------YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 G + E E FN +D + R D + L +EF + + G Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLED-QSIDLTSAEFDLLWLLASSAG 205 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ SR E+ + G E DR++DV + RIR P P I T+ +GY F + Sbjct: 206 RVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKE 263 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEM-HQILSEYDINLVIMDINLPGK 60 P IL+V+D+ + L +G+DV GAEM + ++ ++L+++DI LPG+ Sbjct: 13 NAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGE 72 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 73 DGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRR 132 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + E + + +D +R DG L E++ + F E P ++ Sbjct: 133 QRMEPDA--RGKQDERIRVGDFAIDPQTRQAFLSDGA-LDLTHGEWQLLQFFMERPNRVI 189 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +R +++ + G E DR++DV I R+R+ E+ P P + TI GEGY F Sbjct: 190 NRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAP 243 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + + +G++ DG + ++ +LV++D+ LPG +G Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R +++V ++ LT + + D + GLE GADDY+ KPF P EL R R L Sbjct: 91 IEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--- 147 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++++ E+ + +D+ L+ GE+ L EF ++ P ++ +R Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGH-LVTRGGERISLTPLEFDLLVALARKPWQVFTR 201 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 LL+++ G R V+V ++R+R E P+ PE++ T+ G GY+ Sbjct: 202 ELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+V+D+ R + E G+DV EA DG L ++ ++++++D+ LP +G + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 67 RELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 E+R + + ++ LT +E D+I+GL+ GADDY+ KPF+PREL R R +L R Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + G +D+ R + D L EF + +P ++ SR L Sbjct: 122 -----ADEGKLLRHPGLIVDVAQRRVQAGDD-VLNLTPREFDLLYFLASHPKQVFSREHL 175 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L ++ G + RTVDV + R+R+ ++ E + T+ G+GYRF Sbjct: 176 LDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP Sbjct: 14 VKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKI 73 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 74 DGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +E Y+F +DI SR+ + E L EF ++ N G++ Sbjct: 134 QEKGEVKKDE------YQFRDLMVDIGSRT-VNRGEEVINLTPKEFDILVLLIRNKGRVF 186 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+ + + G RT+DV ++ +R+ + +I T G GY F D Sbjct: 187 GREEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 124/234 (52%), Gaps = 5/234 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG Sbjct: 1 MQ--RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGI 58 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL Sbjct: 59 DGFGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLR 118 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT + ++ +G +LD R D Q L EF + + +PG++ Sbjct: 119 RTAEASRLRQQIGDAAPTS-SGLQLDNARRRATFRD-VQLTLRPKEFDLLAYLASHPGQV 176 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL ++ G + RTVDV IRR+R +I T G GYRF Sbjct: 177 FTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 9/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI++D+ L G+ V A + + L +LVI+D+ LP +GL Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R + + ++ LT R + D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 R E+ + E++ +RS + + +L +EF + + N G++ SR Sbjct: 133 ----GTRDDAEALRLGALEVNWTTRS-VRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L G + +DR++D+ + R+R+ P P I T+ G GY F G Sbjct: 188 ILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 I +V+DE+ +KS E GY V+ A +G + + ++ + +L+I+D+ LP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR+++ V ++ LTG+ +E D + GL+IGADDY+TKPF+PR+L R + LL RT + Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E+ S+ S N ++ + + G L E+ ++ PGKI +R Sbjct: 130 ---ELGEKNSLFSLNDNDLIINDLNYE-VKKAGNIVNLTPIEYNILITMIRYPGKIFTRE 185 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 EL+ G+ K +DRT+D I+ +R E P PE I T+ G GY+F Sbjct: 186 ELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 4/236 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LI+ED+ R + Y+VF A DG E I+ + +LV++DI LPG G Sbjct: 2 KEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R + ++FL+ + + DK+ GL+ GADDY+TKPF+ EL R + L R+ Sbjct: 62 YEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSK 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E +R + E+D++S + G + L E + ++ EN + S Sbjct: 122 MNANRNEPKR---VFSCGNLEIDLDSYDVFNK-GNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++ ++ G + +TV V I +R+ E P P++I T+ G GY+F ED Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTADED 233 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 N+ + + + W + S I G+ +L R E+R + ++P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQ-IQYHGQILQLTRYEYRLLFLLIQHP 180 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 K+ SR +L+ + +RTVD I+ +R+ + + I T G GY Sbjct: 181 EKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLV 237 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 R E K+ +++ +R + +GE +L E+ + +NP +I ++ + Sbjct: 122 -----GRGEEEILKYGKVAVNLKTRE-VLKNGEPVELTSKEYALLELLFKNPNRIFTKEQ 175 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 ++ ++ V V +RR+R+ E P +P II T+ G GY+ Sbjct: 176 IMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE R + + E G+ EA D L+E +L+++D LPG +G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 65 LARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L+ ++ ++ ++ LT R E D++ GLE GADDYITKPF+P+EL R + ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E + G LD S ++ + E ++ +EF+ + F +P ++ S Sbjct: 124 SPMA-------VEEVIEMQGLSLDPTSHRVMTGE-EPLEMGPTEFKLLHFFMTHPERVYS 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +LL + G + DRTVDV IRR+RK E ++ T+ G GYRF Sbjct: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 11/233 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + +VED+ ++ E G+ V G + + NL ++DI +PG +G Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 63 LLLARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + R++R ++ ++FLT + +E DKI GL++GADDYI KPF+PREL R + +L Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + +D + +L G +EFR + + +PG++ Sbjct: 122 RFERPLPPA-------VVTAGDIVIDNGAMTLT-VRGNLVTTTATEFRLLEYLARHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +LL + R+VDV +RRIR+ E P+ P + T+ G GYRF Sbjct: 174 FTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 129/236 (54%), Gaps = 6/236 (2%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ H IL+ +DE + L E G+ V +G+E+ + L +L+I+D+ LP Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++ V ++ LT + + D++ GL+IGADDY+TKPFNP E+ R + +L Sbjct: 61 IPGEEVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RTM +++ Y+ +D S ++ G +L +E++ ++ +P ++ Sbjct: 121 RTMLDHPLADRLE----YRDGDLVIDALS-QVVYKGGINAELTATEYKLLVILSRHPRRV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR EL++++ G + + RT+D ++ +R E P +P I T++G GYRF GD Sbjct: 176 FSREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGD 231 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ EDE R+ + + G+DVFEAT+G E ++V++D+ +P +G Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 65 LARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +R+ NV ++ LT R E DKI GL GADDYI KPF+P EL R + LL R Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + +R+ + K + +D+ ++ + G+ L +E+ + H +N + SR Sbjct: 123 V-----KRKDSKRLKSGPFAIDLAAKQ-VTKYGQSIDLTPTEYDLICHLVQNEEIVLSRD 176 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL + G +TVDV IRR+R+ E P P I T+ G GY++ Sbjct: 177 ALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VED+L L EGY+V +A DG + +LV++D+ LP N Sbjct: 4 KTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELN 63 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +ELR++ + ++ L+ + E DKI+GL +GADDY+ KPF +EL R + +L R Sbjct: 64 GFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S S F +D+ +R+ + +L EF+ + HF +PG+ Sbjct: 124 RY----PSAGAGSPPPVTFGDVSVDMAART-VARARTPVELTAQEFKLLAHFLAHPGRTF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R ELL G + RTVD +R++R FE P+ P T+ G GYRF Sbjct: 179 TREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 4/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE RN L+ EG++V EAT+G E ++ + + +++++D+ LP +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+ +VA++ LT R DK+ GL IGADDY+TKPF P EL R +L+ R+ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ RR + +F + R +I D + + EF + ++ + SR E Sbjct: 135 QSI---RRQEAALEFPHLRILPEGREVIIHD-HSVEFTQKEFDLFISLAKSEQRAFSREE 190 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L+ + G E + R VD I+ IR+ + I T+ G GY+F G Sbjct: 191 LVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT I+IV+DE R +++GY A DG ++ + +L+++DI +PG Sbjct: 1 MQT--IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + RE+R Q ++ ++FL+ R + +DK+ E+GADDY+TKPF+ EL R + + Sbjct: 59 DGLEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRM 118 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + ++ +D + +GE L E + +LHF ++P ++ Sbjct: 119 YAMNPSSEGPK-----LRYGHLVIDPEACK-CEVEGESISLTAKEMKLLLHFAKHPNQVW 172 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + +L ++ + + TV V I +R+ E TP+ PE I T+ G GYRF Sbjct: 173 THEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 140/231 (60%), Gaps = 3/231 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I IV+DE + ++TL S F+ G+ V A ++ ++++ I+ +++DI LP +GL L Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R++R ++V ++ +T R E D+I+GLE+GADDY+TKPF+PRE+ R + +L RT Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTR--- 130 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V++ R +F GW LD+ + L GE +L +EF + +PG+I SR +L Sbjct: 131 AVADPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDL 190 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 L M+ RE +DRTVDV + R+R+ E+ P P+II T +G GY F + Sbjct: 191 LDVMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVFAEKV 241 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 136/240 (56%), Gaps = 4/240 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q HILIVED+ R L G+ DG+++ + + +LV+MD+ LPG++ Sbjct: 10 QRDHILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGED 69 Query: 62 GLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 GL L R LR A++ ++ LT R E D+I+GLE+GADDY+ KPFNPREL R +++ Sbjct: 70 GLTLTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVM 129 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R + + V+ Y+F+GW LDI SR L PDGE L R E+ + F +NP Sbjct: 130 RRARSEPVTKSDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELLNIFLQNPQT 189 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTP-EIIATIHGEGYRFCGDLE 237 + +R ++ + GRE P +R +DV I R+RK + P E+I T+ G+GY +E Sbjct: 190 LLNRDAIMMRYGGREASPFERGIDVQIGRLRKRLQYDNADPQEMIKTVWGQGYMLDVLVE 249 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +LIV+DE +KS E EG VFEA DG + ++ + +L+++D+ LP Sbjct: 3 EEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMT 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +R+++ V ++ LT + +E I GL +GADDYITKPF+PREL R + R Sbjct: 63 GEEICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRL 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 S N +D+ + I +GE L +++ ++ + P K + Sbjct: 123 NEEVVPLSNEISFND---NDLVIDMLKKE-IRKNGENIGLTSRQYKILMTLLKYPNKTFT 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R EL+ G + +DR VD ++ IR+ E+ P P+ I T+HG GYRF G+ + Sbjct: 179 REELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 4/233 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G+ Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R L Sbjct: 63 ATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKEL 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 G+ +++ E Y G L+ +S L+ DG++ L E+ + +F +NP K+ + + Sbjct: 123 GS---QQKDQEVYMLGGITLN-DSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQD 178 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + +++ E + T+ V IR +R+ E P P I + G GY+ D E Sbjct: 179 IYQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYKAESDYE 231 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+V+D+ L+ E + + V A D E I ++ I +++DI +PG+NG L Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +R ++ V ++FL+ R ++VDKI GL +G DDYI K +P E+ R + +L R+ Sbjct: 67 CRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATRR 126 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + E + L++++R ++ DG L EF + F E+P + + +L Sbjct: 127 PMEER-----VLDYGRLRLNLSTREVV-VDGNNVVLTPKEFELLRVFAEHPRHVFTYDQL 180 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L K + T+ V + R+R+ E+ P+ P+ + + G GYRF G Sbjct: 181 LAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L + EGY+ +A G E L I L+I+DI +P +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +E+R+ + + ++ ++ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 T SE + + + +S + G+Q +L EF + +P ++ S Sbjct: 122 EVTNSEP----DVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 E+ +++ +E +TV V + +R E D ++I T+ G GY+ Sbjct: 178 EIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 14/230 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE RN L+ EGY+V EA DG + ++ E +LVI+D+ LP K+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RE+++ ++ LT RD+ D++ G E+GADDYITKPFN + L R ++LL +T Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 N+ + ++ S S+ GE +L E+ +++ +N SR Sbjct: 126 NM--------VESIIEIGDLVINDTSHSVSNSKGE-IELAPKEYDLLVYLIKNNKIALSR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL ++ G + DRT+D I+ +RK I TI G GY+ Sbjct: 177 EKLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 6/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ HILI +D + L + + E A DG E ++ +Y+ +V++D+ +P + Sbjct: 1 MQ--HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKE 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R +++V ++ +T R + +KI+GL+IGADDYI KPF+P E+ R R +L R Sbjct: 59 DGYEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR 118 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + E+ S E+++ +L G + L + E M NP K+ Sbjct: 119 ---MTKKENEQTSENVLSIANLEINLEEYTL-HIGGTKISLTKKEIETMWTLASNPNKVF 174 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +R LL + G + RTVD I+R+R + I TI G GY+F D Sbjct: 175 TRDNLLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 4/234 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L + I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 TM-NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 G + E + + + +L+ ++ DG + ++ E++ + ++PGKI Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVA-DGNKVEVSDLEYKILRLMMQHPGKI 183 Query: 180 QSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S + + + TV V IR++R E P P+ I T+ G+GYRF Sbjct: 184 FSTQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRF 237 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 285 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 4/232 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI++D+ +K +AE + G E Q L E + LV++D+ +PG +G Sbjct: 20 KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 E+R++ ++ ++ T +++ + K+ GL GADDY+TKPF+ EL R +L+ R Sbjct: 80 TLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRF 139 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + +++ F+G ++D+ +RS +G ++LP EF +L+ ++ GKI ++ + Sbjct: 140 NQQAG---AIQKLNFDGLQIDLENRSATTSNG-TFELPPKEFDLLLYCAKHQGKILTKQQ 195 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 + +++ G E D + I R+RK E P +P+ I T+ G GYRF ++ Sbjct: 196 IYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 3/239 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q PHIL+V+D R+ + E G A++ EM L +L+I+D+ +PG++ Sbjct: 6 QLPHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL AR L ++ L+ E D+++GLEIGADDY+ KPF+PREL R + +L R+ Sbjct: 66 GLSAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRS 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG--EQYKLPRSEFRAMLHFCENPGKI 179 ++ F GW LD ++R L+ + L +EF+ ++ F E P + Sbjct: 126 ERREPLAGT-LGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFV 184 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +R +LL +GR + DRT+D + R+R+ E P P+II T+ GY D+ + Sbjct: 185 LTREQLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADVRE 243 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 2/235 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + F W LD +R L+ D L +E+R + F ++P ++ SR Sbjct: 126 MLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +LL GR+ DR++D+ + R+R+ P I T+ EGY F +E Sbjct: 186 DQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVFSFAVE 240 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 6/237 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP IL+V+D+ R L E + + V A AE+ Q L+ I+LV++D+ LP + Sbjct: 33 QTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGS 92 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL R+LR + N + ++ LT +VD+ILGLE+GADDY++KPFNPREL R R +L R Sbjct: 93 GLDACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRR 152 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 R+ Y+F G+ D RS++ P G +L +EF + F + PG++ Sbjct: 153 RSETPAPVGASRA---YRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVL 209 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR +LL GR DR++DV I R+R+ + T ++ T+ GY+F +E Sbjct: 210 SRDQLLDFTRGR-SDTFDRSIDVLISRVRRKLDP-SGTARLLKTVRNGGYQFVVKVE 264 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE + A + VF A + + +L I+LV++D LP +GLL Sbjct: 22 QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++LR + +M LT RD E D +LGLE GADDY+TKPF+ EL R + LL R ++ Sbjct: 82 LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLS 141 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + +F G +D++SR +I D L EF + +P ++ SR Sbjct: 142 AAPTRQ------LIEFEGLRIDLDSREVIAFDN-PLSLTAKEFDLLTFLARHPQQVFSRT 194 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL + G + TV+ I R+R P + E++ T+ G GY+F Sbjct: 195 QLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 + IVEDE + LK+ E GY V A +G E + E + + VI+D+ LP G + Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R ++V +M L+ + +E D+I G+ IGADDY+TKPF+PRE+ +R +L RT L Sbjct: 65 CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124 Query: 126 TVSEERRSVESYKFNGWELDIN-SRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +E + FN E+ I+ + + + E L EF + ++PG++ SRA+ Sbjct: 125 -------KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRAD 177 Query: 185 LLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL+K+ ++R++DV I+ +RK E P+ I T+ G GY+F G Sbjct: 178 LLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + I ++ED+ ++ ++ GY + + A + L ++DI +PG +G Sbjct: 2 SQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDG 61 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + R LR +++ ++F+T R E D++LGLE+GADDYITKPF PREL R + +L Sbjct: 62 LDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R T S F +D ++ L GE +EFR + + +PG++ Sbjct: 122 RFERPSTPS-------LISFEDVVIDASAMQL-KVRGELTTTTATEFRLLDYLARHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR LL + G R+VDV +RRIR+ ES P+ P + T+ G GYRF Sbjct: 174 FSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I ++ED+ L F+ EG+DV +G + + + ++V++D+ +P +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 66 ARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +R + L+ LT + E+DKI+GLE+GADDY+TKPF+ REL R + LL R+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +L + + YKF ++ + G+ L ++F+ +L + GK+ SR Sbjct: 124 SLHFPTAKPE----YKFGDLKISPEKFE-VTIKGQPVHLTTTQFKLLLALVNSQGKVLSR 178 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +++ + + +DRT+DV I+++R+ + + I TI G GY++ + Sbjct: 179 DYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWECE 228 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 128/239 (53%), Gaps = 12/239 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 NGLLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L RT ++G E + G LD S + D ++ +E+R + F + Sbjct: 121 LRRTDSMGI-------SEPIQVEGLCLDPISHRVTISD-MPVQMGPTEYRLLEFFLTHQE 172 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ +R +LL + G + +RTVDV IRR+RK S I T+ G GYRF + Sbjct: 173 RVYTRNQLLDHVWGGNVYVEERTVDVHIRRLRKAL-SLEGHDRFIQTVRGAGYRFSNKV 230 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 6/239 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILIVEDE + R L+ FE E Y+V A DG E + +L+++D+ LP K Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +R++ ++ LT + E K+ GL++GADDY+TKPF+ EL R + L Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 120 RT--MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 R +++ SV++ F LD + + G +L EF+ + +F + G Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDF-KKFIATKGGVPLELSTREFQILKYFWQRRG 179 Query: 178 KIQSRAELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ R +LL+ + G E P RT+D I +R+ E P+II +I G GY+F Sbjct: 180 EVVLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 13/230 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ N +K+ E E ++V A M + L +L+++DI LP +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++L R+ + ++FLT R +++D ILGLE+GADDYITKPFNPR L R + + R Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + K E+D+NS S+I DG++ +LPR EF + ENPGK+ +R Sbjct: 122 GP------KDRNVVKLGDIEIDMNSYSMI-KDGKKEELPRKEFELLKLMIENPGKVFNRQ 174 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 E+L ++ G + RTVDV I ++R+ S E I T+ G GY+ Sbjct: 175 EILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLV 219 >UniRef50_B8IVD0 Two component transcriptional regulator, winged helix family n=10 Tax=Alphaproteobacteria RepID=B8IVD0_METNO Length = 245 Score = 284 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 138/241 (57%), Gaps = 5/241 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + PHILI +D+ R L E+EG+ V A G M + L+ I+LV++D+ L G++ Sbjct: 3 EPPHILITDDDPRIRQMLSRYLESEGFRVSTAESGTAMRKALASEKIDLVLLDLVLAGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL LARE+R + V ++ +TGR + +D ++GLE+GADDYI KPF RE+ R R++L R Sbjct: 63 GLELAREIRASSRVGIIMVTGRSDIIDMVVGLEVGADDYIAKPFQLREVLARTRSVLRRL 122 Query: 122 MNLGTVSE-----ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 + E F GW LDI+ R L+ P+G++ L EF + ++P Sbjct: 123 QPSASTETAKAVGPSSRAEVIGFEGWRLDISRRELMSPEGQEVPLTTGEFDLLAAMAKHP 182 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 G++ SR L+ GRE DR++D + R+R+ E+ P P++I ++ G GY F G + Sbjct: 183 GRVLSRDMLMDLTRGREWDALDRSIDAQVVRLRRKLEADPKNPKLIKSVRGAGYVFAGRI 242 Query: 237 E 237 E Sbjct: 243 E 243 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 3/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI++DE + LK E +G V A +G E + E +L+++DI +P +G Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDIDGYE 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R+ ++FL+ + +E+D+I G +G DDY+ KPF+ +EL R L R Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++EE + F +D+ SR + G L + EF + +PG++ S+ + Sbjct: 122 ILLNEEGKRA-LLNFKNITIDLKSRE-VMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + +K+ G + + TV I+ IR E+ E I T+ G GY++ Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKW 227 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIV+DE L+ E EG+ + EA DG + ++ I+L I+DI +P NG L Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R++ + ++ L+ ++ E+DKI+GL +GADD+I+KPF+ E+ R + L RT + Sbjct: 65 IKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDFN 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 T + ++ + LD +S ++ G + KL E++ + F PG+I ++ ++ Sbjct: 125 TDLLNQEGSQT-CIDDLVLDHHS-CILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + + D T+ V I R+R+ E P P + TI G GYRF E Sbjct: 183 FENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234 >UniRef50_A7ICZ4 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A7ICZ4_XANP2 Length = 255 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 8/238 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I++V+DE R T+ +G+ V A G ++ +L+ +L++MD+++PG++GL Sbjct: 13 RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLT 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 LAR +R A ++ LT D+ VD++ GLE+GADDY+ KPF+ REL R R +L R + Sbjct: 73 LARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTAV 132 Query: 125 GTVSEE--------RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 + E + LD+ + L+ DG + L EF + F +NP Sbjct: 133 PPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQNP 192 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ +R LL R+ +P DR++DV + R+RK E+ P P+ I T+ G GY F Sbjct: 193 NRVLTRDRLLDLAHDRDNEPFDRSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLFVP 250 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 11/237 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +D+ R L+ E+EGY V EA DGAE + I+LV++DI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +RE + + ++ ++ + + DKI+GL++GADDY+TKPFNP E R R+ L R + Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 126 TVSEER--------RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + R LD+++ ++ E L EFR + F +PG Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDA-CVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ ++ ++ ++ G E V V I ++R P IAT+ G GYR Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 125/232 (53%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+ +DE R L GY+V EA + M + ++ ++V++DIN+PG + Sbjct: 6 EAKRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTD 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL R LR + + ++ L+ VD+I+GLE+GADDY+ KP + REL R + L R Sbjct: 66 GLTALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125 Query: 122 MNLGTVSEER-RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 G S +R R + F LD++ L G GE+ + EF + F +N G++ Sbjct: 126 GFAGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVL 185 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +LL++ R + DR++D+ I R+R+ E P PE I T+ G GY F Sbjct: 186 NRDQLLEQAHDRGWEHFDRSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 133/233 (57%), Gaps = 9/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMH---QILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ EAEG+ V EA DGA + S ++LV++D+ +PG + Sbjct: 3 RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR A+ ++ +T R EVDK++GL +GADDY+TKPF+PRE+T R +++L R Sbjct: 63 GLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRRR 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + T + R +F+ +D R I DG +L EF + PG++ S Sbjct: 123 RDGTTGDDPR-----LRFDELTVDPIGRE-ITVDGAPVRLTALEFDLLHALVRAPGRVFS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 RA+LL+++ G + +R VDV IR +R P +IAT+ G GY+F G Sbjct: 177 RAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 10/229 (4%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+VED+ ++ + AE + V A DG + ++ NL+I+D+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR + ++ LT ++ E DK+LGL++GADDY+TKPF PRE R LL RT + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++ F + S + L EF +L N G+ R Sbjct: 129 YNQPD------DTLYFCTLTIYPQSYQAFIEQ-KTVDLTPKEFELLLILARNAGRTLKRE 181 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL+++ G E RT+D I+R+R+ + T+ G GY+ Sbjct: 182 QLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 3/232 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+TP IL+++DE + ++ EGY V + + + + L ++ I+LVI+D+ +PG Sbjct: 8 METPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGV 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +RE+ N+ ++F++ + + DKI GL GADDYI KPFN EL R ++ L R Sbjct: 68 DGIQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S+ + N +D N + ++ D + + E+ ++ +PG + Sbjct: 128 YQVYSKPIGVDNSI--IQANDLLIDTN-KKMVSVDNRPVAVTKIEYEILVLLASHPGTVF 184 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S ++ K+ E + T+ V IR++R+ E P TP I T+ G GY+F Sbjct: 185 STEDIYTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKF 236 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +ILI+EDE + +K+ E EGY V+ +G + ++ + I+LVI+D+ LP +G Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + LR+ ++V + LT + DKI GL IGAD+Y+TKP +PRELT R L R Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR---- 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V ++ +V S+ N +D++ R L+ GE+ L +EF + N GK+ +R Sbjct: 119 --VGCKKENVISFNDNKLIIDVDKR-LVKLSGEEINLTPNEFDILYILASNQGKVFTREA 175 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++++ G E DR++DV I+ +RK E +P+ I T+ GY+F Sbjct: 176 IIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 129/232 (55%), Gaps = 6/232 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D+ N L + FE EG+ ++ A G+E + + N++++D+ LP +G Sbjct: 7 KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++R NV ++FLT + ++DK+ G G DDYITKPFNP E+ R + L R Sbjct: 67 TLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMTQ 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L + + + Y + +++D N+ L+ +G + P E + +++FCE+P +I S+ Sbjct: 127 LSSSYPLK---QVYDYEYFKIDPNTGRLV-VNGTRIDCPAQEMKLLIYFCEHPNQILSKH 182 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ K + G E D TV V +RR+R+ E P P I T+ G+GY F + Sbjct: 183 QIYKDVWG-EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFEAE 233 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +LIVED+ ++ EA G+D DG E+ +L + +L+++D+ LPGK+ Sbjct: 3 EKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKS 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + RE+REQ ++ ++ +T R VDKI GL +GADDYI KPF+P EL R L + Sbjct: 63 GYDICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQY 122 Query: 122 MNL--GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + E+ E + +NS + + K P EF + NP + Sbjct: 123 DRMMRKIPEEKTEEPEEICVADLRILVNSWK-VYKGEREIKFPNREFELLKFLAMNPNIV 181 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +L +K+ G + TV V I RIR+ E P+I+ T+ G GYRF D Sbjct: 182 FSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_A8GAJ9 Two component transcriptional regulator, winged helix family n=54 Tax=Gammaproteobacteria RepID=A8GAJ9_SERP5 Length = 246 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 133/238 (55%), Gaps = 4/238 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKN 61 P +LIV+D+ + L + + V G+E +LS+ I LV++D+ LP N Sbjct: 2 KPAVLIVDDDPAICDLLCDVLNEHVFSVHACHRGSEALTLLSQQPDIALVLLDLILPDTN 61 Query: 62 GLLLAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GLL+ +++ R + ++ ++ LTG +E D ++GLE+GADDYI KPFNPR + RA+ +L R Sbjct: 62 GLLVLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLRR 121 Query: 121 TMNLG--TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 T L + R E ++FNGW LD +L P + L + E+ +L ++ K Sbjct: 122 TGALALEPATAGRNKPEGWQFNGWCLDTARCTLHNPQRQPVDLTQGEYGLLLALVQHARK 181 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 + +R LL+ L+ DRT+DV I R+R+ E P PE+I TI G GY F D+ Sbjct: 182 VLTRDRLLELTHSETLEVFDRTIDVLIMRLRRKIEINPHQPELIRTIRGLGYVFAADV 239 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 7/236 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D+ R L++ G+ V DG L +LVI+D+ LP ++G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 64 LLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 L R +R+ QA V ++ LT +E D+++GLE+GADDY+ KPF+PREL R + LL R Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + F+ W LD S L DGE+ L ++F + F ++P +I Sbjct: 145 SEF----GQAAPGSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQIL 200 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 R + GRE P DR VD+ + R+R+ T P +I T+ G GY + Sbjct: 201 DRDTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAAHV 256 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ +K E EG+ V DG + + +LV++D+ LPG Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +++RE + ++ LT + + +K+ GL IGADDY+TKPF EL R +L R Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 R+ +++ DI++ +I + + +PR E + + + P ++ Sbjct: 121 IEQDHEEV-NRKEGNRLEYDNLIFDIDA-FIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R EL++ + G + + DR +D+ I+R+RK +S I T+ G GY+F + Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 6/236 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL+VED + L GY V+ A DG + ++ +LVI+D LP + Sbjct: 4 HVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R +R+ + ++ LT R E D ++GLE+GADDY+TKPF REL R R LL R Sbjct: 64 GLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRD 123 Query: 122 MNLGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + ++ + + E ++ LD + ++ ++ L +EF + NPG+ Sbjct: 124 QRIQQLLQADAQPATEVLRYGDLVLDPHLH-IVALRQQELDLTPTEFAILDLLLRNPGRA 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR LL + G+ DR+VD + R+RK D I T+ G GYR + Sbjct: 183 FSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAE 235 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 128/235 (54%), Gaps = 9/235 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T HI +VED+ +N + + + EGY + + ++ ++ I+DI LPG +G Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +++R +++V ++ ++ +D E+DKILGLE+G DDY+TKPF+PREL R + L R+ Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ + K + + N R + +GE+++ E+ +L ENP + SR Sbjct: 122 SHR---QDEIEEDRVKVDQLLVYKNERRVFF-EGEEFETTTKEYDMLLLLAENPNRAFSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ELL K+ G + DR VD I+RIRK + P + T+ G GYR D E Sbjct: 178 EELLMKIWGNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKDEE 227 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 10/233 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 + ILI+ED+ V LK FE EGY V A DG ++ L+++D+ LP Sbjct: 2 IHAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKV 61 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + R LRE+ + ++ LT + E D +LGL++GADDY+TKPF+ +EL R L Sbjct: 62 NGYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + +++ Y F D +R+L+ +G+ L EF + N G+ Sbjct: 122 R--------QRKQTGTVYTFGDCRFDTTARTLVR-NGQDVPLSPKEFDLLTFLVTNAGRA 172 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ++ + G + + R++D + +R E P P I+ T+ GY+F Sbjct: 173 LSRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKF 225 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P I I +D+ R L + EGY + A +G E+ + S I+L+I+D+ +P Sbjct: 3 SQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMG 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ E+R+ + ++ LT + +++D + G+ +GADDYI KPFNP E+T+R ++LL R Sbjct: 63 GIEACIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRY 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + G S+ + F LD+ +R D +L EF + +F +P ++ + Sbjct: 123 RDYG--SDRADLTSTLVFENVTLDLQTRQ-CRKDEMLIRLTPKEFDILAYFMRHPNQVLT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ + + G D TV V I +IR+ E TP P II T+ G GYR Sbjct: 180 VEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 128/233 (54%), Gaps = 13/233 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +N+ V ++ +G D + +L+ DG L +EF F N GK+ Sbjct: 122 RNVNI------LPKVAHWQRDGLAADFEAYTLL-VDGVDAHLTPTEFNLFGEFVRNEGKV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL G E + + RTVD +RR+RK D + T+ G GYR Sbjct: 175 LSREQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 120/238 (50%), Gaps = 8/238 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ P ILIVED+L +K+ E + V A + VI+D+ LP K Sbjct: 1 MQPP-ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDK 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +EL++ + ++ LT + +E ++I G +GADDY+ KP +PREL R + +L R Sbjct: 60 SGEELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRS-LIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 G FN L ++SR + GE + +EF+ + +PG+ Sbjct: 120 YDGAGA------GEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRT 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR EL+ K G + ++R+VD I+ +R+ E PE I T++G GY F G+ + Sbjct: 174 YSRDELVSKALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFSGERD 231 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 12/234 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKN 61 +L++EDE R+ LK+ E GY V A +G E + +E I ++++DI LP + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ G +D++SR + DG++ +L EF + +N GK+ S Sbjct: 122 YGSQDDGKT-------EYQGIVMDVHSRE-VTVDGKKIELTPKEFDLLKLLLDNKGKVVS 173 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R + L ++ G + RTVD I+++R+ +I T+ G GY+ GD Sbjct: 174 REKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacillaceae RepID=Q5WBT6_BACSK Length = 238 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE+ L+ E E + + +AT G E Q+ E NL+++DI LP Sbjct: 1 MEHAKILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G L E+R + ++F++ R + DK+ GL IG DDYITKPFNP E+ R + +L Sbjct: 61 ISGFELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R E Y + + S +++ + + E + FCENP +I Sbjct: 121 RQKMY----ERSEKKPVYDYGYFAFYPES-AILMVQNQTVECTAKELELLHFFCENPNRI 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + A+L +++ G ++ ++TV + I ++RK P+II + G GY+F E Sbjct: 176 FTTAQLYERVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPNE 233 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P +LI+ED+ LK FEA+ Y V A DG E +LV++DI LP Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60 Query: 61 NGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + R +R ++ ++ ++ LT + E D I GLE+GADDY+TKPF+ REL Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLA------- 113 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + + ++F +LD+ + L G++ +L EFR + F PG+ Sbjct: 114 -RAAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQ-GGKEIELTTKEFRLLEFFATRPGRA 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +R ++L + G ++ +DR+VD + +R E+ P P +I TI GYRF Sbjct: 172 LTRDQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFES 226 >UniRef50_A8FHC6 Response regulator n=3 Tax=Bacillus RepID=A8FHC6_BACP2 Length = 240 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+T ILI +DE ++ + + EG+ +++A E ++ DI+L+++D+ +PG Sbjct: 1 METAKILIADDEEAIVKMVERVLKKEGFKHIYKAYHADEALDVVKNEDIHLLLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 K+G + E+R+ + +LT R ++VDK+ G GADDYITKPFNP EL R + L+ Sbjct: 61 KSGFDVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLN 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT + ++ + Y++ + +S L GE + +FC++P + Sbjct: 121 RTY-ISLKEDQDEAQSPYEYAHFSYHPHSAEL-KVRGEVTACSAQLLSLLKYFCDHPNVV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S+ ++ +K+ G + TV V IR++R+ E P PE I TI G GY+F Sbjct: 179 LSKDQIYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKFIP 233 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILI+EDE+ R LK E EGY V A DG E + + +LV++D+ +P +G Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ELR AN V ++ LT + D++ GL+ GADDY+ KPF+ EL R R +L R Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E+R+V + +F E+D+ ++ + E+ + E PG+ SR Sbjct: 123 ------EKRAVATLRFGEVEIDMVKQTARRGR-KDLHFTAKEYAMLRLLSEAPGEPISRE 175 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L + G P RTVD I +R ES P+ P I T+HG GYR G Sbjct: 176 RFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 126/236 (53%), Gaps = 11/236 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG Sbjct: 22 MKT--VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGM 79 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R Sbjct: 80 DGLEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S E + ELD +R+ GE+ L RSEF M F PG++ Sbjct: 140 -------SSEPLPNAVLRAGELELDPTTRT-FLVRGERVDLTRSEFELMSAFLRAPGRVF 191 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R E L + E +RT+DV +R +R E+ P P +I T+ G GYR DL Sbjct: 192 TRLE-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPDL 246 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 3/233 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L++ED+++ R+ L EGY V +A G E +I+ E+ ++V++D+ LP +G+ Sbjct: 3 KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM-- 122 + +RE+++V +M L+ + +++ L+ GADDY+ KPF+ E+T R L+ R+ Sbjct: 63 VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E +LD R L+ G+ + SEF M F +PGK+ SR Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLL-VRGKLIETTFSEFEMMKLFLSHPGKVFSR 181 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 EL+ + G + DR +DV I +RK E P P +I T+ G GY++ D Sbjct: 182 EELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTD 234 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL---- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 E R + E+D N+ + + DGE L +EF+ + PG+ +R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYT-VTRDGEPLDLTPTEFKILALLLRRPGQAFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 A++ + ++ R +DV I R+R E P PEII T+ GYR Sbjct: 177 AQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 13/236 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L RT + + + G LD S + DG+ ++ +E+R + F + Sbjct: 121 LRRTGPGDSEAP-------IEVGGLLLDPISHR-VTIDGKPAEMGPTEYRLLQFFMTHQE 172 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +R +LL ++ G + +RTVDV IRR+RK + ++ T+ G GYRF Sbjct: 173 RAYTRGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFS 226 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNG 62 IL+VED + F+ E +D A DG E + S +++ +D+NLPG +G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +A+++REQ+ V ++ LT RD+E D++LGLE+GADDY+TKPF+P L R + L R Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 122 M--------NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFC 173 V E S + + +++ +R D L EF + Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +NP ++ SR +LL+ + + +RTVD I+++R+ E P++I T+ G GY+F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKF 238 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ ED+ R L I E EGY V A DG E +I E +L ++DI +PG Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + RELR + +A++ LT + E+DK++GLE+GADDYITKPF EL R +L Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ + + +D + ++L E + + F +P + Sbjct: 121 RSRRTAPGAAGELPS-TLAIGPATIDRKTYRGCLGT-RNFRLTAREMKLLEAFYRHPDEA 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R LL G + + RT+D I ++RK E P P++I T+HG GYR+ Sbjct: 179 LPRNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVA 233 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P IL+VED+ L+ E+EGY V A DG ++ E + L+I+D+ LP Sbjct: 1 MNNP-ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRM 59 Query: 61 NGLLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + V ++ LT R + DK+ GL +GADDY++KPFN EL R +L Sbjct: 60 SGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT + + + E+D R + + ++ L EF+ + + G+ Sbjct: 120 RTH-------QSKPSQHVSVGDLEIDFQ-RLSVCKNRQKLDLSSREFQVLECLFRSAGQT 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R ++ +++ G + +RT+D I R+R E P P I T+HG GYRF Sbjct: 172 VDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 12/233 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+L+VEDE L+ E EGY V A DG + E +LV++D LP +G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + R LR E ANV ++ LT R E D++ GL+ GADDY+ KPF+ EL R R +L Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + + +D + + D + L +EFR + + ++PG++ Sbjct: 122 RIR-------PGLAEDVIEAGDITMDRVAHRVKRAD-REIHLGPTEFRLLDYLMQHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL + G ++ RTVDV + R+RK + + + I T+ GY F Sbjct: 174 FSREQLLDAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAF 225 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 12/235 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+++D+ R+T+ + E EG+ +A DG + + +LV++D+ LPG Sbjct: 12 MQT--ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGM 69 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + ++LR + ++ L+ D+E+DK+L LEIGADDY+ KPF RELT R R +L Sbjct: 70 SGTEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLR 129 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + F+ E+D R ++ GE KL +E+ + +F NP + Sbjct: 130 RASTDAR--------KVMHFSEVEVDFE-RRVVKRKGEDLKLTPAEYNLLTYFLHNPDRP 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +R +L + G E P+ RTVD + ++R+ E P+TP+ T+HG GYRF Sbjct: 181 LTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 7/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP ILIV+D+ RN + + Y + A DG + +++ LVI+D NLP NG Sbjct: 8 TPKILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLPDVNG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E++ + NV ++ LT R +E DKI L GADD++TKPF+ E+ +R LL R Sbjct: 67 YSLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIR 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +R F ++ R +I + + L EF + +P + SR Sbjct: 127 YINPSPTQR-----IIFKQLVINPEGREVI-LNDKLLGLTALEFNILHFLASHPNQAWSR 180 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +L++K+ G + R VDV I ++RK E P PE I T+ G GY+F E+ Sbjct: 181 PQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFEAPDEN 236 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 118/232 (50%), Gaps = 17/232 (7%) Query: 6 ILIVEDELVTRNTLKSIFEAEG-YDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 I+I+ED+ +++ E EG + V T G + + E+ NL+++DINLP NG Sbjct: 5 IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGFE 64 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R LR A+V ++ LT R +E DKI GL +GADDYITKPF+ REL R +L RT Sbjct: 65 ICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRRT 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + Y +D N ++ G++ L R EF + ++ G++ + Sbjct: 125 EGTPSS--------VYDDGTLFIDYN-HFVVRCQGQEINLTRKEFALLKLLAQSKGRVLT 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R LL ++ G + RT+DV IRR+R+ I T G GYRF Sbjct: 176 REYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFV 223 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T H+LIVED+ + G V DGA + +LVI+D+ LPG++ Sbjct: 6 HTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R++ + ++ LT R ++ D I GL+ GADD++ KP +PR L R + LL R+ Sbjct: 66 GFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRS 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E R F +D R + + +L +EF + N G+ S Sbjct: 126 EAPQVPAAELR---RLVFGPLVVDNALREAWLRE-QSIELTGAEFDLLWLLVANAGRTLS 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+ + G DR++DV I RIR P P +I T+ +GY F + Sbjct: 182 REEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPE 235 >UniRef50_A0L527 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L527_MAGSM Length = 250 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 145/239 (60%), Gaps = 4/239 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ VTR L F GY A D M ++L+ I+LV++DINLPG++ Sbjct: 3 QRHEILIVEDDKVTRALLSGYFNNAGYRTHAAEDARSMQRVLNGGGIDLVLLDINLPGRD 62 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + LR ++ + ++ ++ R EVD+I+GLE+GADDY+ KPFN REL R + LL R Sbjct: 63 GLSITQNLRAESAELGIILVSSRSEEVDRIIGLELGADDYVVKPFNERELLARVKVLLRR 122 Query: 121 TMNLGTVSEERRSVE---SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + + R ++ SY+F+ W L ++R + DG Q +L EFR +L F G Sbjct: 123 IDLIKHYANSCRDLDELGSYRFDHWTLSHSARQVYHRDGRQVELTNGEFRLLLAFVNRAG 182 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 + QSR +LL ++ RE P+DRT+DV + R+R+ E P+++ TIHG GY+F ++ Sbjct: 183 RAQSRDQLLDAVSNREWSPNDRTIDVMVNRLRRKLEVDARDPKLLITIHGVGYQFTPEV 241 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP IL+ ED+ TL + EGY V DG +L+++D+ LP ++G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 63 LLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + ++LRE V ++ LT R VDK++GL+ GADDY+TKPF EL R LL R Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + +++ G +D R+ + G+ L E+R + + ++ G+ + Sbjct: 122 -----PVRRSLNAGTFQLGGIAVDF-RRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVT 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R +LL ++ G RTVDV + +R+ E P P + T+ G GY+ + Sbjct: 176 REDLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LI+ED+ ++ + GY A+DG E ++ + +I+DI LP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 60 KNGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 NG + + +R E +V ++ LTG+ D I GL IGADDYI KPF+P EL R + +L Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 RT+ + + +F+ + + + + E+ ++ E + NP + Sbjct: 121 RRTILSESEKDR------LQFDNIIIHMKEYR-VLINNEEVQMAPKEMELFYYLAMNPKQ 173 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + +R +LL ++ G E RTVDV I+RIR I TI G GYRF Sbjct: 174 VLTRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRF 226 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 14 VTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQA 73 L E G+ V G + + +LVI+D+ +PG+NGL + R++R + Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS 74 Query: 74 NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGTVSEERRS 133 V ++ LT + + D+I+GLE+GADDY+ KPFNPREL R + +L R +GT + Sbjct: 75 KVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSA 134 Query: 134 VES---YKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMT 190 + + G L++ SR ++ D ++ +L +EFR + ENP +R EL+ Sbjct: 135 AQRAVLVEAGGLALNV-SRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAW 193 Query: 191 GRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GR+ +DR++DV + ++R + I T+ G GY F G Sbjct: 194 GRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFVG 237 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 12/237 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + P +L+V+DE R ++ AE V EA DG + + + +LV++D+ +P + Sbjct: 5 KRPVVLVVDDEPRMRELIRLYLAAEC-TVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +RE++ V ++ LT R D++ GL +GADDYI KPF+ REL R + +L R+ Sbjct: 64 GWQTLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + + + + R+ + G L EF + +PG++ S Sbjct: 124 ------AGQVEANVPIRRGSLTIRPAERTALYA-GRPLPLTPKEFDLLALLAAHPGQVFS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R +LL ++ G + + RTVD I+ +R +I T+ G GYRF ++ D Sbjct: 177 REKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF-AEVPD 229 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L+ EGY+ A +G + L+ I+LVI+D+ +P NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R+ +++ ++ L+ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 T + ++ +S + G+ +L EF + +P ++ S Sbjct: 122 QVT----NDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 ++ +++ +E +TV V + +R E+ ++I T+ G GY+ Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 6/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P ILIVEDE + L EG++ A G E +LS + I+L ++D+ +P +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 ++LRE + + ++FLT R +E D+I GL +G DDY++KPF+ EL R + +L RT Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 123 NLG-TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E G +L+ +RS + D L EF +L E+ G++ + Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARS-VKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R LL + G + + +RTVD I+ +R + + +I T+ G GY+ D+E Sbjct: 180 REHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV-DIE 231 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T IL+++D+ L + EGY + A G + + + + +LV++D+ +PG Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +RE + V ++ LT + E D+ILGLE+GADDY+ KP++ REL R + LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E+ + NG EL+ ++ + DGE + SEF+ + GK Sbjct: 121 IELDKNQKEDDNGI--LACNGVELNFDTYRVYS-DGEHIPMTTSEFKVLRVLMSRAGKAV 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +L ++ GRE+ +DR++D+ + +R+ T + + I TI G GY F Sbjct: 178 PKEDLYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFV 229 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED++ N ++S E Y V ++ G E + + +L+I+DI LP +G Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R +NV ++ L+ + EVDK+ GL++GADDYITKPF+ EL R N + R Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +++ S+ YK NG + + + D ++ +L EF ++ +N K+ ++ E Sbjct: 124 NKKTDD-NSIWRYK-NGLTIIKDEMK-VLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKE 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L + + ++ + T+ V ++ +R+ + P+ I T+ G GY+F G+ Sbjct: 181 LYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 26/256 (10%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+D R + + EG++V EA +GA+ ++ + D +L+I+DI +PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R++RE +N ++FL+ R E DK LG G DDY+ KPF+ EL R++ L+ R Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 121 TMNLGTVSEERRSV------------------------ESYKFNGWELDINSRSLIGPDG 156 +E F+ E++ R + +G Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVRE-VHKNG 179 Query: 157 EQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRE-LKPHDRTVDVTIRRIRKHFEST 215 + L +E+ + N + S L + + + TV V IR +R E Sbjct: 180 QLLDLTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDH 239 Query: 216 PDTPEIIATIHGEGYR 231 P PE+I T+ G+GYR Sbjct: 240 PGNPELIKTVWGKGYR 255 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+ ED+ N++ E EG+ V A DG E ++ +L+IMD+ +P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G ++LR+ + V ++ L+ + + DK++GL IGADDYITKPFNP EL R + L R Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ S E + +L+ ++ D + L E++ + +NP K+ Sbjct: 121 YHSYDNLA----SSEIIQIGNIKLNTFEKT-CSVDDKIINLTSLEYKILEFLMKNPNKVF 175 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S + + + E +TV V IRRIR+ E P P I G GY+F Sbjct: 176 SIESIYEHVWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFV 227 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 124/237 (52%), Gaps = 6/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI+EDE + L EG++ A G++ + L + +L+++D LP + Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++ Q N+ ++ LT R + DKILGLE+GADDYITKPF+ RE+ +R R +L R Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +E + F + R L+ GE L EF +L G+I Sbjct: 121 LAQAQAPVKEA-APSVIGFRDIVVSRAER-LVTKKGEAVDLTPKEFDLLLALLGVRGRIF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +RAELL+ + G + RTVD I+R+RK D ++I T+ G GY+F E Sbjct: 179 TRAELLESVWGYDFPGDMRTVDTHIQRLRKKL----DAADLITTVFGIGYKFEKRTE 231 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + S G+D +A G + + ++V++D+ LP +GL Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R ++ ++ LT R +E DKI GL +GADDYITKPF+ REL R +L R Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T + LD + + +L R+EF ++ PG++ +R + Sbjct: 162 TTPPQ---VTTPLIVGDLILDPVAHQ-VRVGETTVELTRTEFELLVALALRPGQVLTRHD 217 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 L+ ++ +R VDV I +R+ + I T+ G GYR Sbjct: 218 LVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 13/229 (5%) Query: 8 IVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLAR 67 +VED + RN ++ EGYDV A DG E + +Y VI+D+ LP +G + R Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 68 ELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +R ++ ++++ LT + + KI GL IGADDY+ KPF+P EL R +L R+ Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQF- 127 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + NG + + ++ +G+ L + EF + +F ENP + SR +L Sbjct: 128 --------CQKISLNGLIIQP-RKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQL 178 Query: 186 LKKMTGR-ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ++++ ++ DRT+D I+++R+ E P P+ I T+ G GYRF Sbjct: 179 IQQIHPHTDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFV 227 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 279 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +I IVED LK E + V + G E+ + +L+++D+ LPG Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L RE+R + V ++ +T + E+D++LGLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 68 DGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E + L + S I G+ K+ +SEF + F +PGK+ Sbjct: 128 -------GGEEPHEAAIHIGPLLLKPETHS-ITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR EL+ K+ GR + +DR +D I+ +RK + E I +++G GY+F Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFI 232 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 3/232 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG-KNGL 63 IL VED+ L F +GY V A DGA M + L+ +LV++D+ LPG ++G Sbjct: 25 RILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGREDGY 84 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +LAREL+++ ++ ++FL+ R + +D+I+GLEIGADD++ KPF PREL R R +L R Sbjct: 85 VLARELKKERDIGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRRL-- 142 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + R F+GW LD+++R L G L EF + + PG++ SR Sbjct: 143 PAGTARPRGEGRRIGFDGWLLDLDARVLRDAQGGVQNLTTQEFNLLSVLAQRPGRVLSRD 202 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +LL R P+DR+VDV I +IR+ P I TI G GY F + Sbjct: 203 QLLDLTVSRHWSPYDRSVDVMIGKIRRKIGDNGPEPRRIRTIRGTGYMFSPE 254 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE ++ E GY V +G E+ L + +LVI+D+ LPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L ++++E+ ++ ++ +T + E + +LGLE+GADDY+ KPF+ REL R R++L RT Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + L++ + + + L E++ + F NPG +R + Sbjct: 131 EEE---EQFEGNITIGNIFLNLKAHKAF-INNFEVDLTLIEYKILNLFMTNPGVAFTRDK 186 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL ++ G+++ DR VDV I+R+R E + TI G GYRF Sbjct: 187 LLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRF 231 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 278 bits (713), Expect = 9e-74, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 1/229 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIVEDE + L GY +G E+ + +L+++D+ LPGK+GL Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE++E +N+A++ +T R +E+D++LGLE+GADDYI KPF+PRE+ R + +L R Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T + + EL+ ++ + +L EF + PG+I SR++ Sbjct: 123 LTTGINTNIAKQSQTTTVELNTDNYQA-TINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L+ ++ +RT+D I+++RK + E++ +++ GY+ Sbjct: 182 LIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 278 bits (713), Expect = 9e-74, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 4/233 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + +ILIV+D++ L Y V + + + L +++I+DI +P NG Sbjct: 2 SHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHING 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L ++LR+ +++ ++ L+ R D+I GLE GADDY+ KPF PREL R ++ R Sbjct: 62 FDLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFE 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + Y++ +D + DG +L ++EF + NP + SR Sbjct: 122 HSEDTANN---AAVYQYGELSIDTDKYKAT-MDGSNLELTKTEFIILSLMVRNPYILLSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L ++TG + ++RTVD+++ R+R P +P+ I T+ GEGY F D Sbjct: 178 DRLYNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 100/243 (41%), Positives = 153/243 (62%), Gaps = 11/243 (4%) Query: 1 MQTP-----HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDI 55 MQ P +L+V+D+LV + + + F EGY V A DG + L++ +++LV++DI Sbjct: 1 MQAPLESHVTLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDI 60 Query: 56 NLPGKNGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 NLPG++GL LARELR + A++ ++ +T R+++VDKI+GLE+GADDY+TKPFNPREL R Sbjct: 61 NLPGQDGLSLARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARV 120 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 ++LL R+ + + +S +F GW L+++ R L G+ L R EF + Sbjct: 121 KSLLRRS-----ATRPAETADSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVLALLVR 175 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +PG+I R L + ++G + P DR+VDV +RR+R + T +IATI GEGYR Sbjct: 176 HPGEILDRDRLSRAVSGHDWSPQDRSVDVLVRRLRAKLDDPARTDSLIATIRGEGYRLAA 235 Query: 235 DLE 237 D+E Sbjct: 236 DVE 238 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 4/239 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+T IL++ED+ N ++ ++ Y T G E + ++VI+D++LP Sbjct: 1 MKT--ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDI 58 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + R +R N + +T R+ E+D+I+GLE+GADDYITKPF+ REL R Sbjct: 59 DGIEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFR 118 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + ++D R + D + R EF + +PGK+ Sbjct: 119 RWDKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDN-IVNISRKEFDILQLMAASPGKV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 SR +L+ + G E +R +D ++RIR E PE I TI G GYRF + ++ Sbjct: 178 FSREMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDNYDN 236 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 128/233 (54%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPG 59 + IL+VED+ + + E EGY++ +A DG + + + L+++D+ +P Sbjct: 4 VSNIKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPF 63 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +R+++ V ++ ++ ++ E+DKI + +GADDYI KPF+ E +R + L+ Sbjct: 64 VDGFEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + E S +YK +DI + +++ + K+ EF + F NP K+ Sbjct: 124 RYIYFNSEQEMHESAINYK--DLVVDIEAHTIL-KGNQLIKVTPIEFEILKLFLLNPNKV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +++++ + G++ +D TV V I+R+R E D+PE I+T+ G GY+ Sbjct: 181 FTKSQIYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE L+ E +GY V A G + +I+ +LV++D+ LPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL +AR +R + ++ L+ + E D I GLE+GADDYITKPF+P+ L R R++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R + R++ +G + + + +G++ L SEF + PG Sbjct: 121 LRRQQAKAAPPDPGRTIAV---SGITIHPRKHT-VEVNGKKIDLTPSEFDILSFLASRPG 176 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + +R +++ K+ G DR+VDV I +RK E E I T+ G GYRF Sbjct: 177 LVFTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRF 228 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 355 1e-96 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 351 9e-96 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 346 4e-94 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 345 6e-94 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 343 3e-93 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 342 6e-93 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 342 7e-93 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 340 2e-92 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 340 2e-92 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 340 3e-92 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 339 6e-92 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 339 7e-92 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 339 7e-92 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 338 1e-91 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 337 3e-91 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 337 3e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 336 3e-91 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 335 5e-91 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 335 6e-91 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_B8G223 Two component transcriptional regulator, winged ... 333 3e-90 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 333 3e-90 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 333 3e-90 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 333 4e-90 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 332 6e-90 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 332 7e-90 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 332 7e-90 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 331 1e-89 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 329 5e-89 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 329 6e-89 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 329 7e-89 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 328 9e-89 UniRef50_C4L340 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 328 1e-88 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 327 1e-88 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 327 2e-88 UniRef50_B8I272 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 327 2e-88 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 326 3e-88 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 326 3e-88 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 326 3e-88 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 326 4e-88 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 326 5e-88 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 326 5e-88 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 325 5e-88 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 325 6e-88 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 325 1e-87 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 324 2e-87 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_D1C683 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 323 3e-87 UniRef50_B8G179 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B8I014 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 323 3e-87 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_A4J267 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 322 8e-87 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 321 1e-86 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 321 1e-86 UniRef50_C4L703 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 320 2e-86 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 320 2e-86 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 320 2e-86 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 320 3e-86 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 319 5e-86 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 319 5e-86 UniRef50_D1C280 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 319 7e-86 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 318 8e-86 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 318 8e-86 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 318 9e-86 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 317 1e-85 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 317 2e-85 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 317 2e-85 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 317 2e-85 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 317 2e-85 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 317 2e-85 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 317 2e-85 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 317 3e-85 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 317 3e-85 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 316 3e-85 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 316 3e-85 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 316 4e-85 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 316 5e-85 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 316 5e-85 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 316 5e-85 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 315 5e-85 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 315 6e-85 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 315 1e-84 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 315 1e-84 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 315 1e-84 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 314 1e-84 UniRef50_A4AL32 Putative two-component system response regulator... 314 1e-84 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 313 4e-84 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 313 4e-84 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 313 4e-84 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 312 5e-84 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 312 7e-84 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 312 8e-84 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 312 9e-84 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 311 1e-83 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 311 2e-83 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 310 2e-83 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 310 2e-83 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 310 2e-83 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 310 2e-83 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 310 3e-83 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 310 3e-83 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 309 4e-83 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 309 4e-83 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 309 4e-83 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 309 4e-83 UniRef50_C0WE14 Two-component system transcriptional regulator n... 309 5e-83 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 309 5e-83 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 308 8e-83 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 308 8e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 308 1e-82 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 307 2e-82 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 307 3e-82 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 307 3e-82 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 306 3e-82 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 306 3e-82 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 306 3e-82 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 306 4e-82 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 306 4e-82 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 305 6e-82 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 305 8e-82 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 305 1e-81 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 304 1e-81 UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacilla... 304 1e-81 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 304 1e-81 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 304 2e-81 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 304 2e-81 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 304 2e-81 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 304 2e-81 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 304 2e-81 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 304 3e-81 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 304 3e-81 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 303 3e-81 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q3A190 Two component signal transduction response regul... 303 3e-81 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 303 3e-81 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 303 3e-81 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 303 3e-81 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 303 4e-81 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 303 4e-81 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 303 4e-81 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 302 6e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 302 6e-81 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 302 7e-81 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 302 8e-81 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 302 1e-80 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 302 1e-80 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 301 1e-80 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 301 1e-80 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 301 2e-80 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 300 2e-80 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 300 2e-80 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 300 2e-80 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 300 2e-80 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 300 3e-80 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 300 3e-80 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 300 3e-80 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 300 3e-80 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 300 3e-80 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 300 4e-80 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 300 4e-80 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 299 4e-80 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 299 5e-80 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 299 5e-80 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 299 5e-80 Sequences not found previously or not previously below threshold: >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ R L EGY + A DG + + +LVI+D+ LPG Sbjct: 27 MPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGI 86 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R +++V ++ LT R +E DK+ GLE GADDY++KPF REL R + LL R Sbjct: 87 DGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + +E K E+ I L+ +G EF +N ++ Sbjct: 147 SQTQNSQTETTGG---LKIGDLEIFIERH-LVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +LL+K+ G + RTVDV I +R+ E+ P +P + T+ G GY+F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 351 bits (903), Expect = 9e-96, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 129/235 (54%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LI +DE R+ LK E E Y V A DG E ++ + NLVI+D+ +P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R LR N+ ++ LT +D EVDKI+GL IGADDYITKPF+ E+ R + L+ R Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + LG+ + + F G +DI+ ++ ++ L E + F NP ++ Sbjct: 121 FLVLGSNANTQEK-TILTFKGLTIDISKY-IVTVGDKEISLTGKELELLKFFASNPEQVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ +L + + D TV V IR++RK E+ P P+ I T+ G GY+F G+ Sbjct: 179 TKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 118/234 (50%), Gaps = 5/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+DE L+ E EG+ V A+DG E D +L+++D+ LPG +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE+R ++ LT + +++DKILGLE+GADDYITKPFN REL R R +L R Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + L R G +L E+ + +PG + +R Sbjct: 121 ----AASRQDRAGRLVVGDLVLHPRQRRA-EVAGRPLELTAREYDLLELLARHPGVVYTR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ELL + G + +RTVDV +RRIR+ E P P + T G GY + Sbjct: 176 QELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 126/241 (52%), Gaps = 6/241 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + EGYDV +A D E +++ +++ I+DI LPG Sbjct: 25 MAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGM 84 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G L R+LR + N ++FL+ + E DK+LGLE+GADDYITKPF+ RE+ R + + Sbjct: 85 DGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAV 144 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 R EER G E+D+ + ++ L EF + EN G Sbjct: 145 FRRIQLSAQEREERPKK--IVAKGLEIDVERYE-VKVHDQKVSLTPLEFELLRFLAENEG 201 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 K+ SR LL K+ G + RTVDV IRR+R E P P+ I T+ G+GY+F + Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGK 261 Query: 238 D 238 + Sbjct: 262 E 262 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M I++V+DE R+ + E EGY V +A +G + ++L + ++L+I+DI +P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ ++RE+ N+ ++ L+ + ++DKI GL GADDY+TKPFNP EL R ++ L R Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 V + + + + ++ + + ++ +L EF + N G + Sbjct: 121 YKKFN-VQNGYINDDIIEIDELTINTATHE-VQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S ++ +++ E D TV V IR++R+ E P P+ + T+ G GY+ Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 130/232 (56%), Gaps = 6/232 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T IL+VEDE R+ + + E E Y V DG + + S++ +LVI+D+ LP Sbjct: 7 ETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVP 66 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R+ ++V ++ LT + D+I+GLE+GADDY+ KPF+PREL R R LL R Sbjct: 67 GERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRV 126 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ E +F +D++ + G++ L SEF+ + PG++ S Sbjct: 127 H-----ADSEPQREVLEFGELTIDVSGHK-VLVGGKEVDLTASEFKLLTTLSRYPGRVYS 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R EL++K+ G + + ++RT+D ++ +R P P+ + T+HG GYRF Sbjct: 181 RMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 342 bits (878), Expect = 7e-93, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+DE R L + GY+V A DG Q E +LV++DI LP +GL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 65 LARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R+L+ + + + ++ LT + E+D++LGLE+GADDY+ KPF+ REL R + +L R+ Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 122 MNLGTVS-EERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 ++ S E + ES G LD +S D + L E+ + NPG+ Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHD-KTIALTPKEYELLKLLVTNPGRAF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR ELL+++ G E RTVDV IR +R + P + I T+ G GYRF Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 4/231 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + E EGY V A DG E + ++V++D+ LP +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +E+R ++V ++ LT RD+E D+I+GLE+GADDY+ KPF+P+E+ R R + R L Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---L 118 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 S K LD NSRSL G +L +E++ + F +PG++ SR + Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSL-TIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L++K+ + ++RTVD I+ +RK ++PD P I TI+G GY+ G+ Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+V+DE R L+ E E Y + EA +G E E + +L+++D+ +PG + Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + R++RE+ ++ LT + E +++ G E G DDYI KPF+PRE+ +R + LL R Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + F+ +D ++ + DG + L E+ + + P K+ Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHR-VTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRFCGDLE 237 R +LLK++ E RTVD ++R+R+ +P+ + I T+ G GY+F E Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q+ IL+V+DE R+ L S + E Y A++G E ++ +LV++D+ +P + Sbjct: 4 QSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R +E+D+I GL+IGADDYITKPF+PREL R L R+ Sbjct: 64 GLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ELD SRS + G+ L R EF + F +N K+ S Sbjct: 124 HRFTV-----DQSATLTIGKLELDTESRS-VHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +LL ++ G + + RTVD I+ +R + I T+ G GY+F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 130/236 (55%), Gaps = 2/236 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVEDE R K E E Y+V+ A +G E + + +L+I+D+ +P K+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L E+R+Q+NV ++ LT + E D+ILGL +GADDY+TKPF+PREL +R + +L R Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++E S E +F ++ +R ++ + E +L EF + ++P ++ SR Sbjct: 121 QVAIQAKESLS-EVIEFPDLKIYPKTRCVLVCENE-VELTVKEFEVLYVMAKHPKQVFSR 178 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++LL+ + + TV V + R+R+ E I T+ G GYRF + + Sbjct: 179 SQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 6/240 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE L + GY+V ATDGA+ + +++D+ LP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + ++LR++ ++ +T +++E DK+ GLE+GADDYITKPF+PRE+ R + ++ Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 120 RTMNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 RT V+ + ++D N + +G+ L EF +++F E Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYR-VARNGKNISLTPKEFELLVYFVER 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 G++ SR +L + G + R VD+ I +R+ E+ P P +I T+ G GY F GD Sbjct: 180 EGRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGD 239 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ IL++ED + E Y V +DGAE + + +L+I+DI LP Sbjct: 1 MQ-KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + ++ LT + +E D+++GLE GADDY+TKPF+ REL R + L Sbjct: 60 DGLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT S + + ++ F +D R L ++ L EF +L+ +PG++ Sbjct: 120 RTDMSQKESTPQ-ADDALHFGELCIDKTKRRL-TIGDKEITLTAKEFDLLLYMASHPGQV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL + G + ++ TV+ I R+R E+ P+ + T+ G GY+F Sbjct: 178 FSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE +KS EGY+V A +G E + +L+++D +P +G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R+++ + ++ LT + EVDK++G E G DDY+ KPF+ REL+ R + +L R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE-- 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ L + R + G+ L +EF+ + F +NPGK SR E Sbjct: 122 ---AKTINEEIVLTEGDLTLYPHKREVFLK-GKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ G + ++RT+D I +RK E P PE I T+ G GY+ E Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGE 230 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 127/236 (53%), Gaps = 7/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ N+L + EGY+V A DG E ++ +LV++DI LP K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ +NV ++ LT +D EVDK+LGL++GADDYITKPF +EL R +L R Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + +E+D+ R+ + G++ L EF + +PG++ +R Sbjct: 121 ------SDLSKSQKIVAPPFEMDLVKRT-VKVKGKEVNLSYREFEILKLLLSSPGRVWTR 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++K + G R VDV IR +R+ E P P+ I T+ GY+F ED Sbjct: 174 DMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +++V+DE + L+ + EGYDV+ A DG + ++ E + ++V++DI LPG++G+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R++ + ++ LT +D+E+DK+LGLE+GADDY+TKPF+ REL R + L R Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY-S 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + ++ S I GE +L EF + ++ G++ +R Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYS-IKKRGEDIELTHREFELFHYLSKHMGQVMTREH 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 LL+ + G + RTVDVTIRR+R+ E P PE I T G GY Sbjct: 182 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 337 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL V+D+ L+ EG++V A+ G E Q + +LVI+D+ +PG +G Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 ++L+ Q V ++ L+ R EVD+++G +G DDY TKPF+P EL +R + +L R Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + K+ LD R+ + + + +L +F + NP ++ ++A Sbjct: 123 ----PKVNLENMLKYGNLTLDYTKRT-VAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL K+ D TV V IRR+R+ E+ P PE I T+ G GY+F Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 3/239 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R LK E E +++ EA++G E +++ E + +++D+ LP Sbjct: 1 MSNE-ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +A +LRE ++ LT + E +++ G E GADDYI KPF+PRE+ +R + LL R Sbjct: 60 DGIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T + E + + +F E+D ++ + D ++ L E+ +++ + P K+ Sbjct: 120 TQSTTVEQSEPHARDVIEFKHLEIDNDAHR-VLADNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEI-IATIHGEGYRFCGDLED 238 R +LLK++ E RTVD ++R+R+ I T+ G GY+F D Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSND 237 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 4/237 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILI ED+ + EGY + +A DG E +++ I+LVI+DI +P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE Q + ++FL+ + ++ DKI GL +GADDY+TKPFNP EL R L Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 120 RTMNLGTV-SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 R L + + + G +D R++ + L EF + +P K Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDR-IDLTPKEFDILYLLASHPKK 181 Query: 179 IQSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + S + +++ G TV V IR +RK + I T+ G GY F G Sbjct: 182 VFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 2/234 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILI +DE + ++ E EGY V +A DG E I+ I+LV++DI +P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R++R + ++ ++FL+ + ++ DK+ GL +GADDY+TKPF P EL R L R Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + L S + + G +D R+ + GEQ +L EF + +P K+ Sbjct: 121 FLTLNQPK-VAESKSALEVGGVVIDPERRT-VDVYGEQIELTPKEFDILYLLASHPKKVY 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + + +++ + TV V IR +RK ++I T+ G GY F G Sbjct: 179 NVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + LK + +V A DG E + + +++++DI LP +GL Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE +NV ++ LT + +++DKILGL+ GADDYITKPFN E+ R + +L R Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR---N 129 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +++++ + K ++D +SRSL D ++ L EF + NPGK+ SR Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIAD-KEINLTAKEFDLLEILAVNPGKVYSRDN 188 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LLK + G++ RTVDV +RR+R+ E+ P P+ + T G GY F Sbjct: 189 LLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 335 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 122/237 (51%), Gaps = 7/237 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ + E +D DG E EY NL+++D+ LPG Sbjct: 1 MATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + RE+R+ + + ++ L+ + DK+LGLE+GADDY+ KPF+ +EL R + +L Sbjct: 61 IDGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120 Query: 120 RTMNLGTVSEE---RRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R + + SE+ + + + ++ ++ S+ G+ ++P E +P Sbjct: 121 RVVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYF-GDSIEMPPKELELFYFLASHP 179 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ++ +R +LL + G E RTVDV I+R+R+ + ++T+ G GY+F Sbjct: 180 NQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M TP HIL+V+D+ R L + G+ A DG+EM ++L +LV++D+ LPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+LR ++ + ++ LT D++ D+I+GLE+GADDY+ KPFNPREL R R +L Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 120 RTMNLGT---VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R L +E + +F GW LD R L+ PDG L +E+R + F + P Sbjct: 121 RARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYP 180 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ SR +LL GR + DR++DV + R+R P+II T+ G+GY D+ Sbjct: 181 NRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 Query: 237 E 237 E Sbjct: 241 E 241 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +T +L+V+DE ++ + + E Y++ A +G + + +LVI+D+ LP + Sbjct: 3 RTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLID 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +RE + V ++ L+ + +DK +G +GADDY+ KPF+P EL +R + LL R+ Sbjct: 63 GYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + R E++ S + G+ L EF + E+P ++ + Sbjct: 123 FDKEQSVSKVRKTTKISKGELEINCESHEVF-VRGKPVYLTPKEFELLTFMAEHPDQVFT 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +L M E T+ V IR++R+ E P P+ I T+ G GY+F Sbjct: 182 REQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +IL+V+DE + ++ + EG+ ++++ +G + + + + L I+D+ LP Sbjct: 1 MSM-NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDI 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + +RE N ++ LT ++ E+DKI GL +GADDYITKPF P EL R + L R Sbjct: 60 DGFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +V E + F+G LD+++ + ++ L EF + C N G++ Sbjct: 120 FTKYNSV-EPNQEEHLIAFSGLILDMDTHE-CTLNEKKISLTPKEFSILWVLCSNRGRVV 177 Query: 181 SRAELLKKMTGRELKPHD-RTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S EL ++ G + + TV V IR +R+ + + P+ I T+ G GY+ Sbjct: 178 SSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ +K E EG++V DG + + ++VI+DI LPG++GL Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R LR + ++ LT + E D++LGLE+GADDY+ KPF+PREL R + +L R+ Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ-- 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + + K+ G E+ + R + D + ++ EF + H +NP ++ +R E Sbjct: 124 ---AADPATNWQLKYPGLEIRADIRK-VLVDAAESEVTPREFDLLYHLAQNPQRVFTREE 179 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + G + RTVDV IRR+R S P E + T+ G GY+F ++ Sbjct: 180 LLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 136/235 (57%), Gaps = 4/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T +L+ +D+ R ++ FE + ++ ATDG E +++ + ++VI+D+ +P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G RE+R++ + ++ LT +D E D++LGLE+GADDY+TKPF+PRE+ R R ++ R Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E+ ++ ++ F +D++ R +I GE+ EF ++ ++PG + Sbjct: 150 LQP-KPKVEDEAALRTFVFEQLTIDLDKREVI-VAGEKVSFRPKEFDLLVQLVKSPGSVW 207 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +LL+++ G + RT+DV I++IR+ + P I T+ G GY+F D Sbjct: 208 SREQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVD 260 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-SEYDINLVIMDINLPGKN 61 +LIVED+ R+ ++ EG + DG ++L +LV++D+ LPG + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 62 GLLLARELRE----QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 G+ + RELRE V ++ LT RD+E ++GLE+GADDYITKPF+PR+L R R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R S E+R +F G E+D+ R + GEQ +L EF + NPG Sbjct: 121 LRRQRMNAQASPEQRK---LEFPGLEIDLLRRR-VTARGEQVELTAREFEVLALLASNPG 176 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ++ SR +++ + G E R+ DV I+ +R+ E P P I T+ G GYRF Sbjct: 177 RVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFA 232 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 2/231 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T +L+V+DE L EG+ TDG + + +++DI LP +G Sbjct: 9 TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDG 68 Query: 63 LLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + + LR + + +M ++ + +E DK+L LE+GADDY+TKPF+PREL R + +L RT Sbjct: 69 IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E Y + L + D E L E+ +L+ ++P + Sbjct: 129 EAEISGDGEEHREPFYTMSQLRLYPERHE-VYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R LL+++ G + R VDV I ++R+ E P P+ I TI G GY+F Sbjct: 188 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIV+DE R ++ + GY EA DG+ +LS +LVI+D+ +P + Sbjct: 71 QMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G+ RE+R + N ++ LT R E DK+ GLE GADDY+ KPF+PREL R + +L+R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 TM S+ + F +D S + + GE L EF ++ N G Sbjct: 191 TMPRSEASD-----GTMTFGELTIDTASHT-VRVAGEDVSLTPKEFDLLVFLASNKGIAL 244 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR ++L+K+ + DRTVD ++ +R H IAT+ G GY+F D Sbjct: 245 SREKILQKVWNYDYFGEDRTVDTHVKMLRGHLG---KCRGYIATVWGIGYKFDPD 296 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+ILIVED+ ++ E E + DG +I E +L+++D+ LP +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +R+Q + ++ LT + E+D+I+GL GADDY+ KPF+PREL R R LL Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG---EQYKLPRSEFRAMLHFCENP 176 R + G + Y+ N +++D++ G E+ +L EF + F P Sbjct: 131 RQLRQGQP-----VGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 G++ +R +L++K+ G + +R VD IRR+RK E P P I T+ G GY+F Sbjct: 186 GRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIV+DE R + E + EA +G E QIL ++++++D+ +P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L +REQ++V ++FLT R +E DK+ GL++G DDYI KPF+P EL R ++ R Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ E F +D R + DG+ L EF +L ++ G++ Sbjct: 121 AYH------NKQKNEDLSFGPLVIDERGRK-VTVDGDPVVLTLKEFDLLLFLAKHHGQVF 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +LL ++ G + + RTVD I+ +R + D I T+ G GY+F Sbjct: 174 SREDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFE 223 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ +N K+ EG+ + A GAE Q+ + +L+I+D+ LP Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R +R + V ++FL+GR++++D+I+G IG DDYITKPF+P L + ++ + R Sbjct: 61 DGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + + + F +D + + +G+ L EF+ + EN G++ Sbjct: 121 YKELSGSPKAASNGRALIFGELAIDRDCCE-VTREGKPISLAAKEFQLLCCLAENAGRVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S L + G++ RTV V I +RK E P PE I T+ G GY+F G Sbjct: 180 SAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 8/235 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+VEDE R + E GY+V EA G + +L+E+ +LV++D+ LPG + Sbjct: 4 KKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGID 63 Query: 62 GLLLARELREQANVA-LMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + + +RE ++ LT + + DKI+GLE+GADDY+ KPFNP EL R + +L R Sbjct: 64 GLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRR 123 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 Y + LD + L + ++ +L +E+ + F ENPGK Sbjct: 124 RDRYEAGRTG------YTYGSLHLDTAANKL-LKNNQEVELTPTEYSLLKMFMENPGKAL 176 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+L + G + +T+DV IRR+R+ E P P I TI G GYR+ + Sbjct: 177 RREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 10/240 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIV+D+ N +K E EG+ V A DG ++ + +Y+ N VI+DI LP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + ++R + V ++ LT + E DKI+GL++GADDY+ KPF+PREL R R L Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + R + + + + +D +S + D E LP EF + +NP Sbjct: 121 IRRDQDF------KDKDKILEKGDLTVDAHSYKVFVKDNE-VDLPPKEFELLYLLIKNPE 173 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ++ +R E+L+K+ G RTVD ++RIRK E +I T+ G GY+F E Sbjct: 174 RVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKNE 233 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE ++ + GYDV +DG + ++L + +L+++D+ LP +G Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + RELR+Q+N V ++ LT + DKI GL+ GADDY+TKPF+P+EL R + + R Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 L +E ++ + R + DG +L EF +L C++ GK+ S Sbjct: 122 QTLPGQAE----STTFDIGRLTVRAEQRE-VLIDGRTIELTPKEFELLLFLCKHRGKVLS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R +LL + R VDV I +R E TPE I T+ GY+ Sbjct: 177 RQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 11/234 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED + + F EG++ DG E +Q +E + +L+I+DI LP +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++RE + V ++ LT +D E D+++G E+GADDY+TKPF+P L R + ++ R Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK-LPRSEFRAMLHFCENPGKIQSRA 183 G + +E+ F ++ +R + +GE + L EF + + +NP ++ SR Sbjct: 122 GKAVIDEDMIETECF---TINKKTRE-VLLNGEPVENLTPKEFDLLYYLVQNPRQVFSRE 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHF--ESTPDTPEIIATIHGEGYRFCGD 235 +LL+++ G + +RTVDV I+R+RK E P + T+ G GY+F D Sbjct: 178 QLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKFDED 227 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 16/238 (6%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE---------YDINLVIMDI 55 IL+VEDE V R+ + + + EG+ V A DG + +LV++D+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 56 NLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 LP NGL R LR Q V ++ L+ +D E D+++GLEIGADDY+TKPF REL R Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 115 RNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 R LL R+ N + ++ G +L + D + L EFR + F Sbjct: 145 RALLRRSQNQPAETPA-----VLRYEGLKLFPEECR-VLLDDRELTLSPKEFRLLELFMR 198 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ SR +LL+K+ G + +T+DV IR +R+ E+ P P + T+ G GYR Sbjct: 199 HPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIVED++ N +K EGYD+ +A G E + + ++VIMDI +P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ R +RE++ V ++ L+ + + DKI+GL +GADDYI KPF+ EL R + + R Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + + Y++ + D+N+ + + G++ L E + + F ENP ++ Sbjct: 121 AIYYNETKSIKEN-KIYEYGDVKFDMNNYT-VTKGGKELTLTAKEMKILKLFFENPNRVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ ++ + G E TV V +RR+R E P+ P++I T+ G GY+ GD Sbjct: 179 TKVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+D+ + L+ E + + V A++ E + + ++ +I+DI +PG+ Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R +++V ++FL+ R +VDKI GL +G DDYI K +P E+ R + +L R Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + S + + +F L++ +R L DG+ L E+ + F E+P + Sbjct: 121 S-----ASNQPPTETILEFGHLTLNLTTREL-AVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S +LL K+ + TV V + R+R+ E+ P+ P+ I + G GYRF G Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 IL+ +DE R+ L S E EGY+ A++G E + L E +LV++D+ +P + Sbjct: 4 SMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL +RE +NV ++ LT R E+D+I GL+IGADDYITKPF+PREL R L RT Sbjct: 64 GLTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E ++ +DI R + G+ L R EF + F N K+ S Sbjct: 124 HSFSKEQEA-----TFDVGILSIDIEGR-AVSVKGKTVNLTRKEFDLLYLFITNDEKVFS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R +LL ++ G E + RTVD I+ +R I T+ G GY+F + Sbjct: 178 REQLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEAN 228 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 6/241 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+DE L+ + +DV AT+GA+ ++ ++V++D+ LP +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +R ++ + ++ LT +D E DK+ GLE+GADDY+ KPF+PRE+ R +L R Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 122 MNLGTVSEER----RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 +++ +S + + +D + + + KL EF M + + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYK-VSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ++ SR +LL+ + G + R VD+ I +R+ E P P+ + TI G GY F + Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGD 239 Query: 238 D 238 D Sbjct: 240 D 240 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 14/243 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VEDE + EGY+V T G E E D +L+I+D+ LPG +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 63 LLLARELREQA--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS- 119 L + R++R + ++ ++ LT + +E++KI+GLE+GADDY+TKPF+PREL R + L Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 120 RTMNLGTVSEERRSVESY----------KFNGWELDINSRSLIGPDGEQYKLPRSEFRAM 169 RT L + S + + K + + ++ +L EF + Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRA-YIENQELQLTPKEFELL 179 Query: 170 LHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEG 229 N G++ +R +LL+K+ G + RTVDV IR +R+ P+++ T+ G G Sbjct: 180 NIMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIG 239 Query: 230 YRF 232 YR Sbjct: 240 YRL 242 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 T IL++ED+ L EGY V A DG + + + +L+++D+ LP +G Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+Q+ V ++ ++ R +++DKI L +GADDYITKPF+P EL R ++ L R Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E+ + F+G ++ N R ++ DG+ L EF +L E PG++ S+ Sbjct: 133 RYNGLKEQEK---VLSFDGLTINTN-RRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L ++ ++ RTV V I+ +R+ P I T+ G GY+F G Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIG 240 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+VED+ + L+ G+ V DG + +L+++DI LPG +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 64 LLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR++ ++ +T + EVDK+LGLE+GADDYITKPF+ RE+ R + L R Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ + + ++ R + +GE L EF +L F +PG+ SR Sbjct: 127 -VDQETQGQADDTPIELGKVVVEPEKRK-VTVEGEAVDLTSKEFELLLLFARHPGRAFSR 184 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ELL ++ G + + TV+ I R+R E P P + T+ G GYRF E Sbjct: 185 DELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 2/232 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + ILI++DE + +K +G+ V AT+G+ ++ + ++ +L+I+D+ LP Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL L + LR+ ++FL+ + ++DKILGL +G DDYITKPF+P EL R L R Sbjct: 61 NGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + G +D + +L D + L EF + ++P + Sbjct: 121 NRILTNQTNSADLS-ILNIAGLTIDFANYTL-YVDDKPVVLTVKEFEILSLLSQHPNMVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 S +L + G + RTV V I +RK E P P++I TI G GY+ Sbjct: 179 SLTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 10/238 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +I++ +DE + + E EG++V+ A +G E ++ E+ +L+++D+ +P +GL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +R+ + ++ LT R E D++LGL +GADDY+TKPF+PREL +R N+L R Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 124 LGTVSEERRSVESYK---------FNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 S R E G + R + +L EF + Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERR-VSVLESDVELTVKEFDLLHLLAM 181 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 PGK+ SR++LL ++ TV V +RR+R+ E P P I T+ G GY+ Sbjct: 182 YPGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 6/238 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M +L+VEDE R L+ E E + V EA + +IL + ++LVI+D+ +PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G R++RE + V ++FLT R E D++LG E+GADDY+ KPF+PREL +R + LL Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 120 RTMNLGTV---SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R + ++E + F L R + GE L E+ +L+ +N Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAV-VKGETLSLSPLEYDLLLYLAQNA 179 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFES-TPDTPEIIATIHGEGYRFC 233 G++ SR LL ++ G E RTVD +RR+R+ +P + T+ G GY+F Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 3/234 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ++LIVEDE N +K +D G E L E + VI+D++LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + R++RE +NVA++ L+ R ++ DK+LGL GADDY+TKPF+ EL R L R Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + + ++ L D + L EF + +N ++ Sbjct: 121 QDRW--LQDHDVQKDVLHIDNIIINKQEY-LFLRDNKPIPLSAKEFELLFFLAKNRNQVF 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 S+++LL + G + + T+ V IRRIR+ E P P + T+ G GY+F Sbjct: 178 SKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFST 231 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 129/229 (56%), Gaps = 1/229 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ++LI++DE+ ++ EGY VF+A +G++ I++E I++V++D+ +PG +G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++R+ N+ ++ L+ + +VDKI GL GADDY+ KPFNP EL R ++ + R + Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L S + ++ +F ++ + ++ G++ KL E+ +L N G + S Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFL-GKELKLTPIEYEILLLLANNLGTVFSA 179 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 ++ K++ + + TV V I R+R+ E P P+II T+ G GY+ Sbjct: 180 EDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +ILIV+DE + ++ + EG+ V++ G E + + ++++ I+DI LP +G Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+ ++ LT + ++DKI+GL IGADDYITKPFNP E+ R + L R M Sbjct: 62 FHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYM 121 Query: 123 NLGTVSEERR-SVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 E++ V Y G ++ + G++ L EF + + CE+ GK+ Sbjct: 122 RYNNSYEQQSIIVNEYDIKGLIINKETHK-CSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 EL + + G + ++ TV I R+R+ P+ I T+ G GY Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 7/231 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE R+ L+ E EG+ V EA DG + +LV++D+ +P G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 R +++ ++ LT + + DKILGLE+GADDY+TKPFN REL R R +L RT Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + LD R+ + G L SEF + PG++ SR Sbjct: 121 QTPLEP------DVLRAADIVLDRTGRT-VRVGGRYVDLTPSEFAILATLMAAPGQVFSR 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL +++G + +RT+DV IR +R E+ P P+ I T++G GYRF Sbjct: 174 LDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 3/235 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + IL+V+D++ R L+ +G+ V + +M ++L+ +L+++D+ LPG++ Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGED 62 Query: 62 GLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R LR Q+N + ++ +T + EVD+I+GLEIGADDYI KPFNPREL R R +L R Sbjct: 63 GLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 N + + F ++L++ +R + D E L EF + +P + Sbjct: 123 QANELPGAPSQEEA-VIAFGKFKLNLGTREMFRED-EPMPLTSGEFAVLKALVSHPREPL 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +L+ GRE +R++DV I R+R+ E P P I T+ G GY F D Sbjct: 181 SRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPD 235 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 135/234 (57%), Gaps = 1/234 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL+VED+ TR+ + A G V A DG EM +I++++ ++L+IMD+ LP ++GL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L R++R ++ V ++ LT R ++D+I+GLE+GADDY+ KPFNPREL R +L R Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR-QA 133 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + E + F+GW +D R L P G + L +EF + FCE G++ SR Sbjct: 134 SALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSRE 193 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL+ G DR++DV + RIR+ E+ P +I T+ GY F +E Sbjct: 194 VLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVVE 247 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +L+V+D+ + + G+DV A DG ++ +LV++D+ LPG +G+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R LR V ++ LT R +E D+I GLEIGADDY+TKPF+PRELT+R +++L R Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 +E + +D +R+ G L EF + PG+ +R Sbjct: 176 TVPGAE----AGVLRAGTLVVDAAARTA-TRHGVPLGLTVREFDLLAFLLRRPGRAFTRG 230 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ELL+ + G TV V IRR+R+ E P P ++ T+ G GYR+ Sbjct: 231 ELLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIV+DE R L++ GY V A+DG E + + ++VI+DI +P +G Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ ++V ++ LT + D+I GLE+GADDY+ KPF+P+EL R R +L RT Sbjct: 74 YGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTN 133 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 S + FN +D+N R I D E+ +L EF + G+ SR Sbjct: 134 KAAF-SSHLTTSGIINFNFLTIDLNKRQ-IYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 183 AELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 A++L+++ G E R VDV I R+R E+ P P++I T G GY F Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE + L + EG++ DG ++V++D+ LPG +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + +D+ ++ +GE LP EF + + N G++ +R Sbjct: 119 -GADNDDAGADDGVLEAGPVRMDVERH-VVSVNGEPITLPLKEFDLLEYLMRNSGRVLTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L+ ++ G + +T+DV ++R+R E P P + T+ G GY+ G Sbjct: 177 GQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 113/233 (48%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LI+ED+ N +K G D A DG + + +++I+D+ LP Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 61 NGLLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR+ V ++ LT R E DK+ L GADDYITKPF+ RELT R + Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S F+G LD + + ++ ++ EF + F +NPG+ Sbjct: 121 RYRPEKEPSFINSKKTFL-FDGLCLDTENHK-VTLASKEIEITAKEFDLLSLFMKNPGRT 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ELL + G ++ TV+ I R+R E P P+ I T+ G GY+F Sbjct: 179 YSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + IL+V+DE + E Y V +G + +I+ + ++ VIMD+ LP +G Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +++R+ + ++ LT + ++VDKILGLE+GADDYITKPF+P+EL R + +L RT Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++E + + +D R ++ + E+ +L +EF+ + + +N ++ S Sbjct: 122 DRAINLAEIDP---TLQAENIAIDF-KRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLS 177 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R ++L+K+ G E R VD+ I +R E+ P P++I TI G GY F Sbjct: 178 RDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 1/232 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HI IV+D R + EGY + DG E+ +L +L+I+D+ +PG++ Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L R +R ++N ++FL+ R ++D ILGLE+G DDY+ KPFNPREL R + LL R Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + S +F W L+ R L+G DG L +EFR + E PG+I + Sbjct: 123 TPASEGAS-SLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVT 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R ELL K++GR +P DR++D I R+R+ E P P I T G GY F Sbjct: 182 RDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 6/238 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE + +K + E EGY + +A E ++ ++L+++D+ + G Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G +RE ++ + FLT R ++ DK+ G +GADDYITKPFNP EL R R L Sbjct: 61 MSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT S+E S ++Y ++ + + LI GE + + +FCE+P + Sbjct: 121 RTY----QSKETSSNQTYTYDYFTFSPQNAELI-VGGEAVACSAQLLQLLQYFCEHPNVV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 S+ ++ +K+ G + TV V IR++R+ E P PE I T+ G GYRF + E Sbjct: 176 LSKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 233 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 9/237 (3%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M IL+V+DE + +K+ E +G+DV A DG I S +I+L+++D+ LP Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++V ++ LT + E +KI G+ +GADDY+TKPF+ REL +R R LL Sbjct: 61 MTGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLR 120 Query: 120 RTMNLGTVSEERRSVESYKF--NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 R + + F E+DI ++ G L +EF+ + F NP Sbjct: 121 RAYRDFSP-----MADILTFNNGDLEVDIKKM-VVKKQGVVVNLTTNEFKILTVFLSNPT 174 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ SR +L++K G + DRTVD I+ IR+ ES P I T++G GY+F Sbjct: 175 QVFSREKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LIV+DE ++ EAEGY V A DG + L ++ V++D+ +PG Sbjct: 1 MERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +RE +V ++FLT R + DKI GL +GADD+I K P E+ R + +L Sbjct: 61 PSGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R F +D+ + + DG+ +L EF + F E+P ++ Sbjct: 121 RYRRGEPAPRA-----VLDFGRLVIDVQAHE-VRVDGKPVQLTAREFELLQLFAEHPRQV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +R +L +++ G TV V I R+R+ E P P I T+ G GYRF G+ Sbjct: 175 FTREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGE 228 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 130/232 (56%), Gaps = 3/232 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ++LIVEDE + ++ + +GY+V+ A++G E +I+ ++L I+DI +P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + +LRE + ++ LT + E+DKILGL IGADDY+TKPFNP EL R + L R Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 121 TMNL-GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 VS + + G EL+ +++ +I DGE K+ EF+ + +NPG++ Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVI-LDGELIKVTPIEFKILQLLMKNPGRV 179 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S E+ +K+ E D TV V +R IR+ E P+ + + G GY+ Sbjct: 180 FSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 8/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+ +D+ T L+ AEG+ V +A+DG E + +LVI+D+ +P +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +R + V ++ LT R + VDK++G +GADDY+TKPF+ EL +R +L R Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM--- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + +F E++ ++R+ + +L EF + +PG +R Sbjct: 123 ----PTLPESRTLRFGHLEINKSTRT-VHVGDRNPELTPREFDLLWLMASHPGHPFTRES 177 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL ++ + TV V IRR+R+ E P P I T+ G GY+F Sbjct: 178 LLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 12/234 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ V + + E EGY V A +G + ++L++ +LV++D+ LP +G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + +++R E AN+ L+ L+ RD D+++GLE+GADDYITKPF+PREL R + L Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 T + E+ S ++ GEQ L EF + F + P ++ Sbjct: 121 EERRNSTPPPLS-----LTWGDLEIWPESY-MVTIKGEQVTLTGKEFELLHIFMKRPNQV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR LL+K+ G + RTVDV I +R + II ++ G GYR Sbjct: 175 FSREYLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLA 225 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q +LIV+D+ R L E GY+V G + + + +VI+DI +PGK+ Sbjct: 3 QQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKD 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R+LR +NV ++ LT + + D+I+GLE+GADDYI+KPFNPREL R + +L R Sbjct: 63 GLEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRA 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + G L + + + +G+ +L +EF+ + +NPG+ + Sbjct: 123 KG---PENNNPNSGQINVAGVVLHV-AHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMT 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R +L+ + G++ DR++DV I ++R F+ PD I T+ G GY F + Sbjct: 179 RDDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++ ILIVED+ + EGY DGA + L + LVI+DI LP Sbjct: 2 VEQIKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKV 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + +++RE+ N ++ L+ + E DKI+GL +GADDY+ KPF ELT R + L R Sbjct: 62 GGYEVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRR 121 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +N +++R + + E+++++ + L EF + F +NP K+ Sbjct: 122 YLNFSWETDKR--TQIIRHMNIEMNVDTYE-VKVGDNSVTLTAKEFEILKLFLQNPRKVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ +L K + G + TV V IRR+R+ E P P I TI G GY+ + Sbjct: 179 TKNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 4/230 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++ + E + V++ D E + + +++L ++DI +P +G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L +++RE+ N ++ LT + E+DKI GL +GADDYITKPF P E+ R + L R Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ E + G L+ + + L +EF + CE G + S Sbjct: 190 RYNMGT--VKAEEILEHKGLILNKKTHECF-LNERLLSLTPTEFSILAILCEQKGNVVSA 246 Query: 183 AELLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL ++ E + T+ V IR +R+ E + + P+ I T+ G GY+ Sbjct: 247 EELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P IL+V+DE R LK+ E + + A+DG E ++E++ +L+I+D+ LP +G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R+ ++ LT + E DK+ G GADDY+ KPF+ REL R + +L R+ Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E + Y+ ++ N + +G L R+EF ++ NPG++ +R Sbjct: 122 QKAEKAE----IFVYQDGRLKIHPNRMK-VLVNGRDADLTRTEFNILVTLIRNPGQVFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L KK+ G E K +DRT+D I+ IRK + ++I T++G GY+F GD Sbjct: 177 EQLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 5/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + E EGY V A DG + Q+ + ++VIMDI +P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +++++ + +V ++ L+ +D+ VDKI+G ++G DDY TKPF+P EL +R + +L R Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + E++ + + + ++ ++R L+ G++ L EF + +P +I Sbjct: 121 SK----AVPEKKGKDVLDYQNFYIEYSTR-LVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 SR +LL+++ + + TV V IRR+R+ E PE+I T+ G GY+F E Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 134/235 (57%), Gaps = 2/235 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 TPHIL+VED+ + V A D EM ++L++ ++L+++D+ LPG++ Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR Q+ + ++ LT + E+D+I+GLE+GADDY+ KPFNPREL R R +L R Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR- 134 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 G + + V F G+ LD R L+ PDG Q L +EF + C PG++ S Sbjct: 135 -GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLS 193 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 R +LL GR P +R++DV + RIR+ E PE+I TI GY F ++ Sbjct: 194 RDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEV 248 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 4/233 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE R L++ GY+V A++G E I + +LV++D+ +P + Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +ELR++++V ++ LT D+I GLEIGADDY+ KPF+P+EL R R++L R Sbjct: 64 GYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRA 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + T S ++D N R + + E+ +L EF + G+ S Sbjct: 124 DKITTNLGVPNSG-IISIGFLKIDTNKRQ-VYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 182 RAELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 RA +L+++ G E R VDV I R+R E P P++I T G GY F Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 2/231 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+D+ + GYDV A DG + +IL + VI+D+ +P +G Sbjct: 10 KIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDG 69 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR+Q+++ ++ LT E D+I+GLE+GADDY+ K F+ REL R R + R Sbjct: 70 FEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 123 -NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ + + + E+ + +R+ G+ L E+ +L + P ++ S Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTA-YLSGKPLNLTPLEYDLLLTLAKFPARVLS 188 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R +LL + GR DR+VDV I +R+ P P I T+ GY F Sbjct: 189 RDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 2/230 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + ILI++DE + L+ + E Y V++ + + DI+L I+DI LP NG Sbjct: 19 SEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNG 78 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + +R++ ++ LT + E DKI GL +GADDY+TKPF P E+ R + L R Sbjct: 79 FSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYK 138 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +N L++ + DGE L +EF + + G + S Sbjct: 139 KYSPGIITEKIPSELSYNKLCLNVQTHE-CLLDGELVSLTPTEFSILHVLLSSAGNVVSI 197 Query: 183 AELLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL + E + T+ V IR +R+ T DTP+ I TI G GY+ Sbjct: 198 EELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P ILIV+DE ++ E EG+ ++ A + + + +L I+D+ LP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G L +++R Q+N+ ++FL+ + EVDK+LGL IG DDYITKPF+P+E+ R + L Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + E ++++ + + + +GE+ +L E + F NP +I Sbjct: 121 RVSMMEAPVAETT-----TVGPFQMNEDE-TEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S+ L ++ G D TV V IRR+R+ E P P I T+ G GYR Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 105/233 (45%), Positives = 146/233 (62%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M HIL+VED+ V R TL + EGY V + DG M ++ S+ ++L+++DI LPG Sbjct: 1 MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGV 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL L RE+R Q+ V ++ +TG+D+EVD+I+ LE+GADDY+TKPFN REL RA+NLL R Sbjct: 61 DGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T++ SE+ F GW LDI R L PDG +L R EF + F PG++ Sbjct: 121 TLSAREASEDENQK---SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVM 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL ++ R+ P DRTVDV + R+R+ E+ P P I T+HG GY F Sbjct: 178 TRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE + L + EG++ TDG ++V++D+ LPG +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + ++LR +++V ++ +T RD+E+DK++GLE+GADDY+TKP++ REL R R +L R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 G + S + +D+ ++ +G+ LP EF + + N G++ +R Sbjct: 119 --GGDDDSEMSDGVLESGPVRMDVERH-VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L+ ++ G + +T+DV ++R+R E+ P P + T+ G GY+ G Sbjct: 176 GQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 5/230 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ V TL FE G+ V A+DG ++ +L+I+D+ LPG +G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + ++ V ++ LT +E +I GLE+GA DY+ KPF+ EL R R +L Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR--- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + S +LD NSR + D + +L EF + N G SR Sbjct: 118 -WNERQRQTPSSNVLCVGPVQLDRNSRRVWYKD-REIELSHKEFDLLACLMHNAGVALSR 175 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL+++ G + +RT+DV +R +R+ E P P +I T+ G GY F Sbjct: 176 DLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 9/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ P IL+V+DE RN K+ E GY V AT G E Q+ + + +L+++D+ LPG Sbjct: 1 MQ-PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ + LRE+++V ++ LT R +E+D++ GL +GADDY+TKPF+PREL R +L R Sbjct: 60 DGMEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + +F E+D ++R G+ +L +EF ++ N ++ Sbjct: 120 RRG------KPVKSSVMRFTHVEIDPDAREA-RAAGQLLELTPTEFDLLIALARNHNRVL 172 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR +L++K+ G + DR VDV + ++R+ E+ +I T G GYRF Sbjct: 173 SREDLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 2/231 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ ILIV+D+ + + EG+ V A +G E +I++ I L I+DI +P Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L R +RE+ ++ +MFL+ + ++VDK++G GADDYI KPF+ E R + L R Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + + G E+D SR+++ GE L ++E+ + ++ Sbjct: 136 YTYFNQNA-VQVIEKKISIRGLEIDEVSRTVMLY-GETINLTKTEYDILYLMAAAENRVF 193 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 + E+ + + + TV V I R+R E P P+ I + G GY+ Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 17/240 (7%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL----------SEYDINLVIM 53 +IL++EDE + R T+ + EGY A+DG E ++ + ++ L+I+ Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 54 DINLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTI 112 D+ LPG NGL L R +R Q V ++ ++ + +E+D+++GLEIGADDY+ KPF RE+ Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 113 RARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHF 172 R R LL RT +F L GE+ L E++ + F Sbjct: 142 RCRALLRRTRIQQATLPP-----VLRFRDLCLYPQECRATLR-GEELNLSPKEYKLLELF 195 Query: 173 CENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +P ++ R +LL ++ G + +TVDV IR +R+ E+ P P+ I T+ G GYRF Sbjct: 196 MRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 +LI+EDE + +K+ + E Y+ +G E I + + VI+D+ LP + Sbjct: 4 NKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLS 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + + +R Q+ V ++ LT + E D+I GL+IGADDY+TKPF+P+EL R R ++ RT Sbjct: 64 GEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N G + ++D+ D E +L +EF+ + F +N GK+ S Sbjct: 124 NNEGLKAHLIE----LNGGDLKVDLRDMETWKKD-ELVELTATEFKLLSIFIQNSGKVFS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R EL+ K+ G + +DRT+DV I+ +R E + + I T++G GYRF Sbjct: 179 RDELVVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRFVK 229 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 9/227 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+D+ L + EGY+ +DG + ++V++D+ LPG+NGL Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R Q+ V ++ LT + + +D + GLE GADDY+TKPF P EL R R L R Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 E E+ ++D+ + + DG L EF ++ P ++ +R Sbjct: 133 ----GETGQAENLSIGDVQIDVPAHQ-VTRDGVPIALTPLEFDLLVALARKPRQVFTREL 187 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 LL+++ G R V+V ++R+R E P+ PEI+ T+ G GY+ Sbjct: 188 LLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VEDE+ + S E GY+V A DG + E D ++VI+D+ LPG +G+ + Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM-NLG 125 R LR ++ ++ LT R +EVD ++GL +GADDY+TKPF+PREL R + +L R G Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKTG 186 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 ++ + F +D+ +R + D E L R+EF + E P + SR +L Sbjct: 187 QRADVATAGTILTFGALSIDVEAREVWLRD-ELVPLTRTEFDLLATLAERPRLVFSRRQL 245 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + ++ G + + VDV I +R+ + + + T+ G GYR E Sbjct: 246 IDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTGEE 297 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 135/233 (57%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+D+ R L G+ V EA +G EM +++++ +NL+++D+ LPG++GL Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+R Q ++ ++ LT + VD+I+GLE+GADDY+ KPF+PREL R + +L RT N Sbjct: 66 LCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRND 125 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + F GW LD ++R + P+G L S++ + E+P + SR Sbjct: 126 RNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRDF 185 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L++ + G+E DR++DV I R+R H E+ P II T+ GY ++ Sbjct: 186 LVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVK 238 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P IL++ED+ R +++ +G++V EA GA ++ ++V++D+ LP +G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR ++V ++ +T R + D + GLE GADDY+TKPF +EL+ R R LL R+ + Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 G + E E+ ++ ++ +GE L R+EFR + P ++ SR Sbjct: 139 AGGPA-----GEVIDIQDLEIRPDA-GVVRRNGEALHLTRTEFRLLCELASAPDRVYSRE 192 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +LL+++ G + R VDV +RR+R E P P I+ T+ G GY+ Sbjct: 193 QLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 2/234 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LI +DE L E +G+ ++ A +G E QI++ ++++ I+DI +P +G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R++RE ++ ++ L+ + DKILGL++GADDYITKPFN E+ R + L R Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E+ + + L+IN+ +L + + L +E++ + + EN GK+ ++ Sbjct: 121 KSMSEKEKCEK-QYLECGKLRLNINTCTL-YKENIEVYLTSTEYKILFYLLENKGKVFTK 178 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ + + D + V I +R E P I TI G GY+ ++ Sbjct: 179 KQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSNI 232 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VEDE R+ L EG+ V A DG E QI + +L+++D+ LPG +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +++R++ N ++ LT R +EVDK+LGLE+GADDYITKPF+PREL +R + +L R+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 V+ + ++ + D L +EF+ +L ENPG++ SR + Sbjct: 125 QVTN-------VSISNLSINPERLEALIGD-TLLALTPTEFKILLLLAENPGQVFSRLHI 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 L+++ G + ++RT+D I +R E+T + I T++G GY+ + Sbjct: 177 LERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 4/231 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDINLVIMDINLPGKNG 62 I++VEDE ++ EG+ V DGA + L+ + + +L+++D+ LP +G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +R+ ++ LT R E+D++LGLE+GADDY+TKPF+ REL R +L R Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +S +D SR + G+ L EF + NPG++ SR Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSR-GQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL ++ G + DRTVD I R+RK E I T+ G GY++ Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 131/233 (56%), Gaps = 1/233 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T ILIV+D+ L ++V A D M L+ + +NLV++D+ LPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L+RE+RE++ + ++ LT R D+I+GLE GADDY+ KPF PREL R +L Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ V+ + F+GWEL R+L+ P G L +EFR + F + P ++ Sbjct: 149 RSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRL 208 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +L+++ GR + +R++D+ + R+R+ PD P +I T+ G GY F Sbjct: 209 FSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 136/236 (57%), Gaps = 2/236 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + H+LIV+D+ R+ L + G V A DG EMH ++S ++L+I+D+ LPGK+ Sbjct: 79 EDAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKS 138 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ + +++R + V ++ LT + DKILGLEIGADDY+ KPF+PREL R R +L R Sbjct: 139 GIEICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + R SY+F GW LD R L P + +L +EF + F ++ I S Sbjct: 199 E--NNRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILS 256 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R +L++ + + +DR+VD+ I R+R+ +P++I TI GY+F ++E Sbjct: 257 RDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEVE 312 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 9/237 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VED+ + T++ E G+ A DG E ++ + +LV++D LPG Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 61 NGLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+ + ++ LT R E ++ L GADDY+ KPF+ +EL R + LL Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R G + NG +D N+R + G L EF + ++PG++ Sbjct: 129 RAYASGYRDCSPK-------NGLLVDRNTRQ-VQLHGRPIDLRAREFDLLAQLADHPGRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ELL+++ G + + RT+DV +R++R+ E P P + T+ G GY+F G Sbjct: 181 YSRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPP 237 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 2/232 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+L + L+ + +V DG + D +L+++D+++P NG+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RELR+ N ++ +T + E+DK+LGLEIGADDYITKPF+ REL RA+ ++ R+ Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + ++ E F ++++ R + +G++ L EF ++ PG+ SR+E Sbjct: 129 NQQTNDSKTAE-LDFGDLKVNVEMRR-VTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + G ++ TV+ I R+R E P I T G GYRF D+ Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNEDI 238 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 4/236 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LI+ED+ R + Y+VF A DG E I+ + +LV++DI LPG G Sbjct: 2 KEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++R + ++FL+ + + DK+ GL+ GADDY+TKPF+ EL R + L R+ Sbjct: 62 YEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSK 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E +R + E+D++S + G + L E + ++ EN + S Sbjct: 122 MNANRNEPKR---VFSCGNLEIDLDSYDVFNK-GNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 ++ ++ G + +TV V I +R+ E P P++I T+ G GY+F ED Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTADED 233 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 124/234 (52%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PH+L+V+D+ + L + F+ + V A +GA M L + I+LVI+D+ L G++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +++R + V ++ LT + D+++GLEIGADDY+TKPF+ REL R + +L RT Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + F GW LD+ R L D L EF +L F E+ ++ +R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +LL G DR++DV + R+R E P P +I T+ GY F + Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTPVV 234 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE L + E G+ G + + + +LV++DI LPGK+G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 +ELR + + ++ LT R E+D++LGLE+GADDYI KPF+PRE+ R + +L R+ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS---- 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + + LD +SR + G KL SEF + P ++ SR EL Sbjct: 123 --NTPQEESKRITEGPIILDEDSRE-VSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNEL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L G + + +DRT+D IR +RK + E I +I+G GY+F Sbjct: 180 LDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++DE R L+S + EG++VFEA +G E + + +L+++DI +P G Sbjct: 2 AQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R ++A ++ LT + + DKI+GLE+GADDYITKPFN RE+ R R +L R+ Sbjct: 62 LDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSY 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + + L+ ++ +L+ + L SEF + +PG + SR Sbjct: 122 KAQPQA------DVLRIGEIVLERSACTLM-VGEQTVDLTPSEFEILATLMASPGHVFSR 174 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL + +G+ + ++RT+DV IR +R E P P I T++G GYRF Sbjct: 175 LDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +LI++DE +K++ EG V A+ + + + +LVI+DI LP G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++R+ ++V ++FL+ + E DKI+GL IG DDYITKPF+P+E+ R + L R Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L + ++ K +EL+ L + +L E M +F ++P ++ S+ Sbjct: 159 L----QPSQTGTIIKKGPFELNQQQAEL-TKNEAAIELTPKELMLMTYFLQHPNRVISKE 213 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L + + G + D TV V IRR+R+ E+TP P+ + T+ G GY+F Sbjct: 214 TLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +L+V+D+ R+ ++ + GY V A DG ++ +E +LV++D+ LPG G Sbjct: 8 AARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R LRE+ V ++ LT E D+++GLE GADDY+ KPF+PREL +R ++L R Sbjct: 68 LEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRAR 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + E LD+++R DG + L EF ++ +PG+ SR Sbjct: 128 -----TSQPAEGEVLTDGALRLDLDARRG-TLDGGELALTGREFDLLVFLLRHPGRAFSR 181 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 AELL+++ G TV V +RR+R+ E P P I T+ G GYR+ Sbjct: 182 AELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 3/237 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE +K + EG+ +V A+ E I+ + ++L+++D+ +PG Sbjct: 1 MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + G ++ E+R N + FLT + +++DK+ G GADDYITKPFNP EL R + L Sbjct: 61 QTGFDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT V+ S +Y++ + + LI DGE + + +FC++P ++ Sbjct: 121 RTYIHKEVAAASVSS-AYEYERFIFHPDFAELI-VDGETVSCSAQLLQLLQYFCDHPNRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 S+ ++ +K+ G TV V IR++R+ E P +PE I TI G GY+F + Sbjct: 179 LSKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNP 235 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 4/235 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q ILIVED+ + L E Y+V + DGAE ++L + + + +I+D+ LPG + Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 62 GLLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 GL + R R ++ + R +EV +ILGLE+GADDY+ KPF+ EL R + LL R Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 L + R + G +D +R DG + L EF + F +PGK+ Sbjct: 123 VDALAR--DSRIDAGTLDVAGLAIDPIAREA-SVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +LL + G + + ++ TV+ I R+R E+ P P I T+ G GY+ Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAP 234 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 122/236 (51%), Gaps = 6/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQT IL+ +D R L+ + EGY+V EA DG E+ Q+ I+L+++DI +P Sbjct: 1 MQT-RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNM 58 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +LRE +NV ++FLT + + DK LG GADDY+ KPF+ ELT R + LL R Sbjct: 59 NGYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118 Query: 121 TMNLGTVSEER--RSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 EE + + +G L ++ +G++ +L EF + +NP + Sbjct: 119 YQVYKGKKEETLLDTEKDLSMDGLTL-RYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQ 177 Query: 179 IQSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 I S +L +K + T+ V IR +RK E P P I TI G+GYRF Sbjct: 178 IFSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE + ++ + E Y VF+ E + + + +I+L I+DI LPG Sbjct: 1 MSD-KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGT 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++R++ ++ LTG+D EVDKI GL IGADDYITKPF P EL R + L R Sbjct: 60 SGLTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 V E+ + +G +++N+ + +Q L +EF + CEN G + Sbjct: 120 YKKFSGVKEQ--NENVIVHSGLVINVNTHE-CYLNEKQLSLTPTEFSILRILCENKGNVV 176 Query: 181 SRAELLKKMTGRELKP-HDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S L ++ G E + T+ V IR +R+ T D P+ I T+ G GY+ Sbjct: 177 SSELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 5/235 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLP 58 M+ IL+V+D+ + ++ +EGY+V +A D IL E DI+L I+DI +P Sbjct: 21 MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80 Query: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G +GL + +++RE +++ ++ L+ + ++DKI+GL GADDY+TKPFNP ELT R + L Sbjct: 81 GMDGLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANL 140 Query: 119 SRTMNLGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 R + + E + ++ ++R + D ++ KL E+ + NP Sbjct: 141 RRFTEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYD-KEAKLTPIEYDILCLLASNP 199 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 G++ S ++ ++ + + TV V IRR+R+ E +II T+ G GY+ Sbjct: 200 GRVFSTDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 3/233 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+++DEL R+ + + + EG+ V A +G L+ + +LV++D+ LP +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E+ +Q+N+ ++ ++ +D +DK+LGLE+GA+DYITKPF+ REL R + +L R Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + E + E++ ++ ++ +G Q L E+ + + P KI +R Sbjct: 121 HNDEAKYEYTTK--LVCGELEINPDT-KVVQKNGTQILLTAKEYGILETLFKRPKKIFTR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ELL+ + G + R+VD+TI R+RK E +TP+ + TI+G GY+ GD Sbjct: 178 DELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGD 230 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 111/235 (47%), Gaps = 10/235 (4%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+VED+ ++ + AE + V A DG + ++ NL+I+D+ LP +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 R LR + ++ LT ++ E DK+LGL++GADDY+TKPF PRE R LL RT + Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++ F + S + + L EF +L N G+ R Sbjct: 129 YNQP------DDTLYFCTLTIYPQSYQAF-IEQKTVDLTPKEFELLLILARNAGRTLKRE 181 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +LL+++ G E RT+D I+R+R+ + T+ G GY+ D Sbjct: 182 QLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 3/230 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+ + A G++V A DG + + +L+++DI LPG +G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RELR V ++ +T R EVD + GL +GADDYI KPFNP EL R R+ ++R Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ + K E+ +++ + D ++ R EF + E+P + SR Sbjct: 121 RI--LASVKPEQHVVKSGALEIQLDAYRVF-LDKKEVPFTRREFELLAFLAEHPNIVFSR 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L +++ G E TV V I RIR+ E P P + TI G GYRF Sbjct: 178 EALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIV+D+ R L S E G A +G +M +L + ++L+++D+ LPG++ Sbjct: 3 NNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGED 62 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL L RELR + + ++ LT R+ E D+I+GLE+GADDY++KPF REL R R++L Sbjct: 63 GLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLR 122 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R L + + F W+LD +R L+ G L +E+R + F ++P ++ Sbjct: 123 RARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRV 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +R +LL GR+ P DR++D+ I R+R+ + P I T+ EGY F + Sbjct: 183 LTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 2/232 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVEDE+ + ++EG+ V A DG + + NL I+DI LP +G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + +R + + ++ LT +DN++DK++ +GADDYI KPF+ ELT R + +L RT Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 123 NLGTVSEERRSVE-SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++E + E E++ ++ + + G L EF + + E P ++ + Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDT-TEVKVKGNVISLKAKEFTLLKYLAERPNRVVT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 A++ + + G+E D TV V I R+R E P P+ + T+ G GYR Sbjct: 180 IAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 13/241 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKN 61 HILIV+D L L+ I E EG+ V A G + +LS+ NL+++DI +P + Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L ++R + ++ ++FL+ + VDK++G EIGADDYITKPF+ EL R R L R Sbjct: 62 GYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRY 121 Query: 122 MNLGTVSEERRSVE-------SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCE 174 + +EE+ E KF E+ + S + ++ +L EF+ + E Sbjct: 122 ERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYS-VYVCNQKIELSTKEFQLLTFLAE 180 Query: 175 NPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 N G + +R ++ ++ G TV V I+ +R+ E + I T G GY F G Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 235 D 235 + Sbjct: 237 E 237 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 1/229 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIVED+L K E ++V TDG + E +L+I+D+ LP +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R + + +V ++ ++ + E+DKI GL +GADDYITKPF+P EL R ++ + Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L ++ + G E++ +SR +I + ++ L + EF +LH + P ++ + Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVI-INDKEVNLAQKEFDLLLHMAQYPNRVFGK 179 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 EL + + G + TV V IRRIR+ E P P+ I T+ G GYR Sbjct: 180 DELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 12/241 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL--SEYDINLVIMDINLPGK 60 + IL++ED+ + Y+V A G E IL E I+L+I+D+ LP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 61 NGLLLARELR-----EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + +++R + V ++ LT + + D++LGLE+GADDYI+KPF PREL R R Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 +L R ++ +S F + +S + D + +L +F+ + +F + Sbjct: 122 AVLRRHEQ---PNQADSQSDSLTFGRLSVFPDSHE-VTIDDKPVRLTTHQFQLLHYFATH 177 Query: 176 PGKIQSRAELLKKMTGRE-LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GK+ +R +L + M + DR +DV I R+R E P P+ I T+ G GY+F Sbjct: 178 AGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 Query: 235 D 235 D Sbjct: 238 D 238 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 134/237 (56%), Gaps = 3/237 (1%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M T H I IV+D+ R+ L G+ A + E +I +L++MDI LPG Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NGL L R LR ++ V ++FLT + D+I+GLE+GADDY++KPF PREL R R +L Sbjct: 61 MNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT ++ +F GW LD ++R L+ PDG L +E+R + F +NP ++ Sbjct: 121 RTEGGARR--DQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ELL++ GR P+DR++DV I R+R P++I T+ G+GY D+ Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 40/265 (15%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILIVEDE ++ EG+ DG +L+I+D+ +PG +GL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 66 ARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 +R+Q + +M LT R E+D+I+GL GADDYI KPF+PREL R R +L R++ Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGP---------------------DGE---- 157 +Y+ + +D++ R+ G+ Sbjct: 123 RGSHQPR-----TTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQN 177 Query: 158 -------QYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRK 210 +L EF + F PG++ +R++L+ K+ G + +R VD I R+RK Sbjct: 178 QLEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRK 237 Query: 211 HFESTPDTPEIIATIHGEGYRFCGD 235 E P P + T+ G GYRF + Sbjct: 238 KIEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 1/235 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHIL+V+D+ R L E + + V D E + LV++D+ LPG++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + AR LR ++ V ++ LT E D+I+GLE+GADDY+TKPFNPREL R R +L R Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV- 145 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 S Y+F GW L+ + R L+ P G + L E+ +L + P ++ +R Sbjct: 146 GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + GR+ P DR +DV I R+R+ E +II T+ G GY +E Sbjct: 206 DMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLAVPVE 260 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 3/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE L+ E E + V ATDGA+ + + + +I+D+ LP +G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 63 LLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + +++RE +M LT +DNE DKI+GLE+GADDY+TKPF+PRE+ R R + RT Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 ++ E+ +D + + + L EF +++F K+QS Sbjct: 121 TQ-PIEQPVEQASETIVVGDLSVD-ETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R +LL + G + R VD+ + +R+ E P P + T+ G GY+ Sbjct: 179 REKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 111/229 (48%), Gaps = 7/229 (3%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL++ED+ +K E E + V DG + E LV++D+ LP +G L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 ++R + V ++ ++ + + DK+ +GADDY+TKPF+P ELT R + + R Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 E + +F E+DI R + GEQ L EF +L +PG++ ++ EL Sbjct: 123 PQQE-----DRLQFIDVEIDIKGRRVFAR-GEQISLTAKEFELLLFLANHPGRVFTKEEL 176 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + + RTV V ++ +R + P+ I T+ G GY+F G Sbjct: 177 YAAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 4/239 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 ++T IL+V+DE + L + E + + A +GAE ++ + +++++D+ LP Sbjct: 14 VRTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPD 73 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G L R++R N ++F+T R +++DK+ GL IG DDYITKPFNP E+ R L Sbjct: 74 IDGFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + F + L + LI + E E + C +P +I Sbjct: 134 RQHMTQEPNNGEKLN--LHFRSFSLYPSE-GLITVNNEPVHCTAKELELLTFLCTHPNRI 190 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 + +L +++ G D+TV + I ++RK E P P I + G GY+F ++ Sbjct: 191 FTAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 3/236 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 HILIVED+ + L + + G++ GA M +++ +L+++D LPG++ Sbjct: 11 NQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGED 70 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R LR +V ++ LT ++D+ILGLE+GADDY+TKPFN REL R +++L R Sbjct: 71 GFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA 130 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ F+GW +D SR L DG Q + +EF +L FC NP K+ + Sbjct: 131 SYAHH---QEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLT 187 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R +LL P +R++D I R+R+ E P I T+ GY F +E Sbjct: 188 REQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVE 243 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M + +IL+VEDE + ++ +GY+VF+ +G E +++ +I+L I+DI +P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L LRE N ++ L+ + EVDKI+GL IGADDY+TKPF P EL R + L R Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 121 TMNL-----GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 + + G EL+ N++ + DG+ K EF+ + N Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKE-VNIDGKYIKTTPIEFKILSLLMRN 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 G++ S E+ +++ D TV V +R IR+ E P P+ + + G GY+ Sbjct: 180 AGRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 3/226 (1%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 ++VED+ + EG+ + A DG E ++ + +LV++DI LP NG+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 + +RE++N+ ++ ++ +D +VDK LGL GADDYI KPF+ ELT R + + R Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS- 119 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELL 186 +EE + + + +DI++ S + +GE +L +E++ + F NP K+ ++ ++ Sbjct: 120 -AEEPAVNKVIRIHQLAIDIDNVS-VLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 177 Query: 187 KKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + + E ++V +RR+R+ E P +P+ I T+ G GY+ Sbjct: 178 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVEDE+ R ++ F+ EG++V EA+DG E +I SE ++L I+DI +P +G Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + R +RE +N ++ LT + E DK+LG E+GADDY+TKPF+P+ L +A+ LL RT Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L FNG ++ S + +GE+ L E+ +++ N G SR Sbjct: 122 TLN-------DKNILDFNGLTINKLSHE-VKLNGEELLLSPKEYDLLIYLSSNEGIALSR 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L + G + RTVD I+R+R+ IAT+ G GY+F Sbjct: 174 DRILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFE 221 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 4/231 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +ILIV+DE RN L+ + EGY VF+A G E +IL + +++L+++D+ +P Sbjct: 1 MNN-NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDM 59 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + ++RE+ N+ ++ L+ + ++DKI G+ GADDY+ KPFN ELT+R R L R Sbjct: 60 DGFEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T L ++ + S + + +D + + E L EF + N G++ Sbjct: 120 TYFLN--TKIQVSDDIIRIESMIIDKWKHKITIANNE-VSLTAREFEILYLLATNRGRVF 176 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 S E+ +K+ + + TV V + R+R E + +II T+ G GY+ Sbjct: 177 SAEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 8/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+VED+ + A G+ V A DG + +L+++D LPG +G Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R + +V ++ LT + ++I GLE GADDYI+KPF+PREL +R +++L R++ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T ++ + LD ++ S++ GE+ L EF + ++PG+ SR + Sbjct: 161 LTPEA------TFTLGEFTLDASAHSIV-RAGEELALTAREFDLLAFLLKHPGQAFSREQ 213 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LLK + G E TV VT+RR+R+ E+ P P I+AT+ G GYR Sbjct: 214 LLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 3/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILI++DE + LK E +G V A +G E + +L+++DI +P +G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDG 59 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R+ ++FL+ + +E+D+I G +G DDY+ KPF+ +EL R L R Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++EE + F +D+ SR + G L + EF + +PG++ S+ Sbjct: 120 RAILLNEEGKRA-LLNFKNITIDLKSRE-VMVKGNPIGLTKKEFDVLELLSLHPGQVFSK 177 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ +K+ G + + TV I+ IR E+ E I T+ G GY++ Sbjct: 178 EQIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 +LI+EDE LK+ E EGY V+ + DG ++ + + ++V++D+ LP +G Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +AR++R++ ++ LT + +E +KI GL IGADDY+ KP +PRE+ R + +L R Sbjct: 68 EIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK 127 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 ++ E +D ++ + G + L ++EF + P K+ SR Sbjct: 128 EPGRIQQ----EIITAGEITIDTLAKKIYLR-GTEISLTQTEFDILSTLALYPKKVFSRE 182 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 L ++ G + RT+D I+ +R+ E P P I T+ G GY+F Sbjct: 183 NLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+ EDE R+ + + GY+V EA +G E + +++++DI +P +G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + R + V ++ LT R E DK++GL +GADDYI KPF+P EL R ++LL R Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 L + R + +D+ ++ + G ++ +E+ + HF +N ++ S Sbjct: 121 ETLRRRKQPRE----LVSGPFRIDLGAKR-VQKAGVDVEVTPTEYDLLCHFIKNEDQVMS 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R ELL + G +TVDV IRR+R+ E P P+ I T+ G GY++ + Sbjct: 176 RDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + + +G++ DG + ++ +LV++D+ LPG +G Sbjct: 31 KARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDG 90 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + R++R +++V ++ LT + + D + GLE GADDY+ KPF P EL R R L Sbjct: 91 IEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR--- 147 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++++ E+ + +D+ L+ GE+ L EF ++ P ++ +R Sbjct: 148 -----PGDQKAPETLRIADVTIDVAGH-LVTRGGERISLTPLEFDLLVALARKPWQVFTR 201 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 LL+++ G R V+V ++R+R E P+ PE++ T+ G GY+ Sbjct: 202 ELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T ILIV+DE N L+++ + EG+ ++ T G + + +L+++DI LP + Sbjct: 10 TKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLD 69 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + ++R+ V + FL+ ++ ++DKILGL IG DDYITKPF+P+E+ + + R Sbjct: 70 GYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRN 129 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ Y+F +D ++ + G L EF +L +NP +I S Sbjct: 130 QY------KEKNPNMYQFGDITID-EAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFS 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +A L + + G +D + V +R +R+ E P P + T+ G GY+ + Sbjct: 183 KARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKGD 238 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 5/234 (2%) Query: 1 MQT-PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + ILI +D T+ + + + A DG E + + +LVI+D+ +P Sbjct: 1 MSSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +E+R+ +NV ++ LT + E+D+I+GLEIGADDYI KPF+PRE+ R + + Sbjct: 61 IFGTEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R N + R FN + +D++ I + E+ + E + + N G++ Sbjct: 121 RVGNANIDTNLNRK--LVTFNNFNIDLDKYE-IRLNKEKIDVTPKECQILYLLATNEGRV 177 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR E+L K+ G + R VD I+RIRK + I T++G GY+F Sbjct: 178 LSREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFE 230 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 132/232 (56%), Gaps = 2/232 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+I++D+ R+ +K + +G+D G ++ +IL + +L+I+D+ LP +NG Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 63 LLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L + + LR + + ++ LT + +EVD+I+GLE+GADDY+ KPFNPREL R ++ R Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + S ++ +F+ +E + R+L D ++ L EF + F EN + S Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTL-KKDKKEIDLTSGEFSLLKVFIENANQPLS 180 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R ++++ G+EL DR++DV I RIRK E P+ P+ + T G GY F Sbjct: 181 RDQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 3/233 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D++ R L+ E +G+ V A D +M ++L +L+++D LP ++GL Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80 Query: 64 LLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R LR+ + ++ LT R ++ D+I GLE GADDY+ KPFNP EL R R +L R Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR-Q 139 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + VE F W LD+++R+L +G+ L EF + ++P + +R Sbjct: 140 VREVPGAPSQQVEVVSFGSWALDLSTRTL-TREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 +L+ GRE +R++DV + R+R+ E P I T+ G GY F D Sbjct: 199 DKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + +VED+ ++ E G+ V G + + NL ++DI +PG +G Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 63 LLLARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + R++R ++ ++FLT + +E DKI GL++GADDYI KPF+PREL R + +L Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + +D + +L G +EFR + + +PG++ Sbjct: 122 RFERPLPPA-------VVTAGDIVIDNGAMTL-TVRGNLVTTTATEFRLLEYLARHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R +LL + R+VDV +RRIR+ E P+ P + T+ G GYRF Sbjct: 174 FTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 4/235 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 HILI +D + L + + E A DG E ++ +Y+ +V++D+ +P ++G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + R++R +++V ++ +T R + +KI+GL+IGADDYI KPF+P E+ R R +L R Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 E+ S E+++ +L G + L + E M NP K+ +R Sbjct: 121 KKE---NEQTSENVLSIANLEINLEEYTL-HIGGTKISLTKKEIETMWTLASNPNKVFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 LL + G + RTVD I+R+R + I TI G GY+F D + Sbjct: 177 DNLLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVDED 231 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 116/233 (49%), Gaps = 5/233 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q IL+V+DE + + GY V A +G + +L ++DI +PG N Sbjct: 4 QPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMN 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L R LR + N ++FL+ RD+E+DK++GLEIGADDY+ KPF REL R R LL R Sbjct: 64 GYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRG 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ES G LD GP+G L EF + + GK+ S Sbjct: 124 QMDAEP----MAGESITAGGITLDEARHIAEGPNG-SIDLTPREFELLSALMKVAGKVAS 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R +LL++ G E +TVD I+R+R + P II T+ G GYRF Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILI++DE R L + G+ +EA +G + + S I+LVI DI +P +G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L +++R + V +FL+ + +++DKI+GL++GADDY+ KPFNP E+ R + L R Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E+++ E + LD+ S L +G+Q ++ EF+ + ++ G++ ++A Sbjct: 132 FS--KGEKQNHEIIQIGDVMLDLVSCKL-YKNGQQKEVTSYEFKILSLLMKHAGRVFTKA 188 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + + + G+E + + V I ++R+ E P P + TI G GYRF Sbjct: 189 SIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDI-NLVIMDINLPGKN 61 T ILI++D+ + L+ FE +V A G + + ++ ++V++DI LP + Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G +++R + V ++ LT R+++ D+I+GLE+GADDY+ KPFNPREL R + +L R Sbjct: 62 GFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRA 121 Query: 122 MNLGTVSE-ERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + S + F E+D R ++ G + + E + + G Sbjct: 122 TASAEAAPVSSPSACAMVFGSVEIDFAGR-VLRKSGREIAMTGVETDILNALISHKGTPL 180 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +R LL +GR+ + DR++DV I RIRK E P P I T+ G+GY + Sbjct: 181 TRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 5/234 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 QTP ILIVED+ + G DV TDG + + +LV++D+ LPG + Sbjct: 8 QTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSD 67 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + RE+R + ++ LT R ++D++LGLE+GADDY+ KP PR L R R LL R+ Sbjct: 68 GLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS 127 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 N + + +F +D RS + +GE +E+ + N G+I S Sbjct: 128 EN----APSEEIPQRLEFGELVIDNGGRS-VTLNGELVDFTSAEYDLLWLLASNAGRILS 182 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R ++ +++ G E DR++DV I RIR P+ P+ I T+ +GY F + Sbjct: 183 REDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 236 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 129/237 (54%), Gaps = 2/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGK 60 Q I +V+D+ R LK+ E + V A G E +++LVI+DI LPG+ Sbjct: 3 QAKCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQ 62 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R LR Q+ V ++ LT +E+D+I+GLEIGADDY+ KPFNPREL R + +L R Sbjct: 63 DGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + V + Y+F + LD SR L D ++ L +++ ++ F +PG + Sbjct: 123 MEHTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKE-SLSGADYNLLMLFLTHPGAVL 181 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R + + GR+ P DR +DV + R+R+ P++I TI G+GY +E Sbjct: 182 TRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 4/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ R ++ + E+E Y+V EA +G ++L + I+LVI+DI +P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NGL + E+R+ +NV ++FLT + E DK+LGL +G DDY+ KPF+ EL R + LL R Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 121 TMNLGTVSEERRSVE-SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 S E + +L+ ++ DG + ++ E++ + ++PGKI Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVA-DGNKVEVSDLEYKILRLMMQHPGKI 183 Query: 180 QSRAELLKKMTGRELKPH-DRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S + + + TV V IR++R E P P+ I T+ G+GYRF Sbjct: 184 FSTQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 129/237 (54%), Gaps = 3/237 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q H+LIVED++ L G V A +GA M+ L +L+++DI LPG+N Sbjct: 25 QGSHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGEN 84 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R LR NV L+ LT E+D+I GLEIGADDY+TKPF+ RELT R R LL RT Sbjct: 85 GLSICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRT 144 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 +ER + +FNGW LD R L P + EF +L FC NPG++ S Sbjct: 145 ---AYAPDERDRSKVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLS 201 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R ELL P +R+VDV + RIR+ E P ++ T+ GY F +E+ Sbjct: 202 REELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEE 258 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 11/237 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 ILI +D+ R L+ E+EGY V EA DGAE + I+LV++DI +P +G + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 R +RE + + ++ ++ + + DKI+GL++GADDY+TKPFNP E R R+ L R + Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 126 TVSEERRS--------VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 + LD+++ ++ E L EFR + F +PG Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDAC-VLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ ++ ++ ++ G E V V I ++R P IAT+ G GYR Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 129/236 (54%), Gaps = 6/236 (2%) Query: 1 MQTPH-ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ H IL+ +DE + L E G+ V +G+E+ + L +L+I+D+ LP Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 G + +R ++ V ++ LT + + D++ GL+IGADDY+TKPFNP E+ R + +L Sbjct: 61 IPGEEVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RTM +++ Y+ +D S ++ G +L +E++ ++ +P ++ Sbjct: 121 RTMLDHPLADRLE----YRDGDLVIDALS-QVVYKGGINAELTATEYKLLVILSRHPRRV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR EL++++ G + + RT+D ++ +R E P +P I T++G GYRF GD Sbjct: 176 FSREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGD 231 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 1/233 (0%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 PH+L+V+D+ R L V A G +M Q L + I+LVI+D+ +PG++G+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 +ARELR ++N+ + ++G+ +E D+++ LE+GADDY+TKPF+ REL R R LL R Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + +Y+F+GWEL++ +R L P G +L EF + F PG++ SR Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRD 186 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +LL+ + +DR++DV I R+R+ E P P I T+ G GY + Sbjct: 187 QLLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPV 238 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 8/236 (3%) Query: 1 MQTPH--ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP 58 M IL+VED+L L EGY+V +A DG + +LV++D+ LP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 59 GKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 NG + +ELR++ + ++ L+ + E DKI+GL +GADDY+ KPF +EL R + + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R F +D+ +R+ + +L EF+ + HF +PG Sbjct: 121 LRRRYPSAGAGSPPP----VTFGDVSVDMAART-VARARTPVELTAQEFKLLAHFLAHPG 175 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +R ELL G + RTVD +R++R FE P+ P T+ G GYRF Sbjct: 176 RTFTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 11/233 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P IL+VEDE+ ++ + EGY V DG E + +L+++D LPG Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR+ + V ++ LT +D+ D++ GL+ GADDYI KPFN EL R R L Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + +F L+ N+R + +L EF + + +P ++ Sbjct: 121 R--------NHEEDPDLLQFLDLSLNRNTREVF-RGSRLIELTAKEFDLLEYLMSHPKQV 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ++L+++ G + ++V +R +R E+ + +I T+ G GY Sbjct: 172 LSRDQILERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L + EGY+ +A G E L I L+I+DI +P +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +E+R+ + + ++ ++ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 T SE + + + +S + G+Q +L EF + +P ++ S Sbjct: 122 EVTNSEP----DVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 E+ +++ +E +TV V + +R E D ++I T+ G GY+ Sbjct: 178 EIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 2/238 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T HILIV+D+ R + + G V DG M L ++L+++D+ +PG + Sbjct: 4 HTDHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDD 63 Query: 62 GLLLARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 GL+L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L Sbjct: 64 GLVLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLR 123 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT L + + + F W+LD +R LI DG L +E+R + F ++P ++ Sbjct: 124 RTRMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R +LL GRE + +R++D+ + R+R+H P I T+ EGY F +E Sbjct: 184 LNRDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVFSTPVE 241 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ P +LI+ED+ ++ + GY A+DG E ++ + +I+DI LP Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60 Query: 60 KNGLLLARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 NG + + +R E +V ++ LTG+ D I GL IGADDYI KPF+P EL R + +L Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 RT+ + + +F+ + + + + E+ ++ E + NP + Sbjct: 121 RRTILSESEK------DRLQFDNIIIHMKEYR-VLINNEEVQMAPKEMELFYYLAMNPKQ 173 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +R +LL ++ G E RTVDV I+RIR I TI G GYRF Sbjct: 174 VLTRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFE 227 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 8/238 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIVED+ + K E+ G V +G++ + + +LV++D+ LPG++GL Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R++R N ++ LT R +++D++LGLE+GADDY+ KP PR L R R LL R Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 125 GTVSEERRSVE-------SYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 G + E E FN +D + R D + L +EF + + G Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLED-QSIDLTSAEFDLLWLLASSAG 205 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 ++ SR E+ + G E DR++DV + RIR P P I T+ +GY F + Sbjct: 206 RVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKE 263 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE + S G+D +A G + + ++V++D+ LP +GL Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + R +R ++ ++ LT R +E DKI GL +GADDYITKPF+ REL R +L R Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T + LD + + +L R+EF ++ PG++ +R + Sbjct: 162 TTPPQ---VTTPLIVGDLILDPVAHQ-VRVGETTVELTRTEFELLVALALRPGQVLTRHD 217 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 L+ ++ +R VDV I +R+ + I T+ G GYR Sbjct: 218 LVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+IV+DE R +++GY A DG ++ + +L+++DI +PG +G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L + RE+R Q ++ ++FL+ R + +DK+ E+GADDY+TKPF+ EL R + + Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + ++ +D + +GE L E + +LHF ++P ++ + Sbjct: 121 MNPSSEGPK-----LRYGHLVIDPEACK-CEVEGESISLTAKEMKLLLHFAKHPNQVWTH 174 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +L ++ + + TV V I +R+ E TP+ PE I T+ G GYRF Sbjct: 175 EQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 I +V+DE+ +KS E GY V+ A +G + + ++ + +L+I+D+ LP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + LR+++ V ++ LTG+ +E D + GL+IGADDY+TKPF+PR+L R + LL RT Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTE- 128 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 E+ S+ S N ++ + + G L E+ ++ PGKI +R Sbjct: 129 --DELGEKNSLFSLNDNDLIINDLNYE-VKKAGNIVNLTPIEYNILITMIRYPGKIFTRE 185 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 EL+ G+ K +DRT+D I+ +R E P PE I T+ G GY+F Sbjct: 186 ELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+VED+ + L + +AE YD +A DG + + +LVI+D+NLP ++G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E++ + +V ++ LT R E+DKI G +G DDY+TKPF+P EL +R + +L R Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 R E K+ +++ +R + +GE +L E+ + +NP +I ++ Sbjct: 121 K------GRGEEEILKYGKVAVNLKTRE-VLKNGEPVELTSKEYALLELLFKNPNRIFTK 173 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 +++ ++ V V +RR+R+ E P +P II T+ G GY+ Sbjct: 174 EQIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 12/237 (5%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + P +L+V+DE R ++ AE V EA DG + + + +LV++D+ +P + Sbjct: 5 KRPVVLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +RE++ V ++ LT R D++ GL +GADDYI KPF+ REL R + +L R+ Sbjct: 64 GWQTLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + + + + R+ + G L EF + +PG++ S Sbjct: 124 ------AGQVEANVPIRRGSLTIRPAERTALY-AGRPLPLTPKEFDLLALLAAHPGQVFS 176 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R +LL ++ G + + RTVD I+ +R +I T+ G GYRF ++ D Sbjct: 177 REKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF-AEVPD 229 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI +D+ + L S F+ E + V+ A DG E + L E +++++DI +PG Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + R R+ ++ ++FL+ +D+E D+++GL +GADDY+ KPF+ REL R ++ L R Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E V SY+ +D R + L +EF + P ++ Sbjct: 121 RRG-----EVLSQVASYEIRDLFIDKE-RFEVRRKKAWISLTPTEFSLLDILASAPDRVF 174 Query: 181 SRAELLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL+K G +RT+D IR +RK E P P I T++G GY+F G Sbjct: 175 SRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 8/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ L+ E + + V A D E I ++ I +++DI +PG+NG Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R +R ++ V ++FL+ R ++VDKI GL +G DDYI K +P E+ R + +L R+ Sbjct: 66 LCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRS--- 122 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + L++++R ++ DG L EF + F E+P + + + Sbjct: 123 --ATRRPMEERVLDYGRLRLNLSTREVV-VDGNNVVLTPKEFELLRVFAEHPRHVFTYDQ 179 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 LL K + T+ V + R+R+ E+ P+ P+ + + G GYRF G Sbjct: 180 LLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 9/233 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +LIVED R+ ++ E GY V A++G E + +LV++D+ +PG +G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L R R V ++FLT RD E+DK+LGLE+GADDY+TKPF+ EL R R L R+ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + + ELD +R+ GE+ L RSEF M F PG++ +R Sbjct: 142 EPLPNA-------VLRAGELELDPTTRT-FLVRGERVDLTRSEFELMSAFLRAPGRVFTR 193 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 E L + E +RT+DV +R +R E+ P P +I T+ G GYR D Sbjct: 194 LE-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 6/236 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P IL+VED + L GY V+ A DG + ++ +LVI+D LP + Sbjct: 4 HVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLD 63 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL + R +R+ + ++ LT R E D ++GLE+GADDY+TKPF REL R R LL R Sbjct: 64 GLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRD 123 Query: 122 MNLGT--VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + ++ + + E ++ LD + ++ ++ L +EF + NPG+ Sbjct: 124 QRIQQLLQADAQPATEVLRYGDLVLDPHLH-IVALRQQELDLTPTEFAILDLLLRNPGRA 182 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR LL + G+ DR+VD + R+RK D I T+ G GYR + Sbjct: 183 FSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAE 235 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 I ++ED+ L F+ EG+DV +G + + + ++V++D+ +P +GL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 66 ARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +R + L+ LT + E+DKI+GLE+GADDY+TKPF+ REL R + LL R+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +L + + YKF ++ + G+ L ++F+ +L + GK+ SR Sbjct: 124 SLHFPTAKPE----YKFGDLKISPEKFE-VTIKGQPVHLTTTQFKLLLALVNSQGKVLSR 178 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 +++ + + +DRT+DV I+++R+ + + I TI G GY++ + Sbjct: 179 DYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWECEP 229 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 ++T +LI++DE + L+ FE EG+DV A DG E ++ + +I+D+ LP Sbjct: 14 VKTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKI 73 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L +R+Q++V ++ LT +D ++DKILGLE+GADDY+TKPFN REL R R L+ R Sbjct: 74 DGITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR 133 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +E Y+F +DI SR+ + E L EF ++ N G++ Sbjct: 134 QEKGEVKKDE------YQFRDLMVDIGSRT-VNRGEEVINLTPKEFDILVLLIRNKGRVF 186 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+ + + G RT+DV ++ +R+ + +I T G GY F D Sbjct: 187 GREEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 2/235 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+VED+ +K E EG+ V DG + + +LV++D+ LPG Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +++RE + ++ LT + + +K+ GL IGADDY+TKPF EL R +L R Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + +++ DI++ +I + + +PR E + + + P ++ Sbjct: 121 IEQDHEEVNRKE-GNRLEYDNLIFDIDAF-IIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R EL++ + G + + DR +D+ I+R+RK +S I T+ G GY+F + Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEM-HQILSEYDINLVIMDINLPGK 60 P IL+V+D+ + L +G+DV GAEM + ++ ++L+++DI LPG+ Sbjct: 13 NAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGE 72 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL +AR L + ++ L+ R ++D+I+GLEIGADDY+ KPFNPREL R R +L R Sbjct: 73 DGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRR 132 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + E + + +D +R DG L E++ + F E P ++ Sbjct: 133 QRM--EPDARGKQDERIRVGDFAIDPQTRQAFLSDG-ALDLTHGEWQLLQFFMERPNRVI 189 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +R +++ + G E DR++DV I R+R+ E+ P P + TI GEGY F Sbjct: 190 NRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAP 243 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 3/232 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE + ++S FE EG+ V E G + L +L+I+DI LPG +G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 63 LLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + R++R + ++ LT R +EVD+++GLE+GADDY+ KPF+PREL R R LL RT Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ +G +LD R D Q L EF + + +PG++ + Sbjct: 121 AEASRLRQQIGDAAP-TSSGLQLDNARRRATFRD-VQLTLRPKEFDLLAYLASHPGQVFT 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 R LL ++ G + RTVDV IRR+R +I T G GYRF Sbjct: 179 REVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 9/234 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LI++D+ L G+ V A + + L +LVI+D+ LP +GL Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + RE+R + + ++ LT R + D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR---- 132 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 R E+ + E++ +RS + + +L +EF + + N G++ SR Sbjct: 133 ----GTRDDAEALRLGALEVNWTTRS-VRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +L G + +DR++D+ + R+R+ P P I T+ G GY F G + Sbjct: 188 ILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGRE 241 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 1/237 (0%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M + IL+ +D+ + E + V A G M QIL + I++V++D+ LP Sbjct: 1 MSSEGQILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++GL L RELR ++N+ ++ L+ + ++D+I+GLE+GADDY++KPF+PREL R +++L Sbjct: 61 EDGLQLCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +L + SY F+GW +D SR+L P G + L E + F +P ++ Sbjct: 121 RARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 SR ++L G++ +P RT+D+ + R+RK P +I T+ GY FC + Sbjct: 181 LSRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFCSRV 237 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL++ED+ L+ + EG+DVF A DG E + +++++D+ LP +G Sbjct: 2 REKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + + +RE + V ++ LT +D DK++G + GADDY+TKPF+ EL R + LL RT Sbjct: 62 MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGE-QYKLPRSEFRAMLHFCENPGKIQS 181 ++F ++ ++ + G+ +L + EF + N G + S Sbjct: 122 KS------VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLS 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R ++L+++ G + +D +D+ I+ +R P + I T+ G G+ F Sbjct: 176 RDKILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILIV+DE RN L+ EGY+V EA DG + ++ E +LVI+D+ LP K+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + RE+++ ++ LT RD+ D++ G E+GADDYITKPFN + L R ++LL Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--- 122 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + ++ S S+ GE +L E+ +++ +N SR Sbjct: 123 -----KTNNMVESIIEIGDLVINDTSHSVSNSKGE-IELAPKEYDLLVYLIKNNKIALSR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +LL ++ G + DRT+D I+ +RK I TI G GY+ Sbjct: 177 EKLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKNGL 63 ILIV+D+ L+ EGY+ A +G + L+ I+LVI+D+ +P NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + R++R+ +++ ++ L+ + ++DKI GL GADDY+TKPFNP E+ R ++LL R+ N Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 T + ++ +S + G+ +L EF + +P ++ S Sbjct: 122 QVT----NDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 ++ +++ +E +TV V + +R E+ ++I T+ G GY+ Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 12/233 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 H+L+VEDE L+ E EGY V A DG + E +LV++D LP +G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + R LR E ANV ++ LT R E D++ GL+ GADDY+ KPF+ EL R R +L Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + + +D + + + L +EFR + + ++PG++ Sbjct: 122 RIR-------PGLAEDVIEAGDITMDRVAHR-VKRADREIHLGPTEFRLLDYLMQHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL + G ++ RTVDV + R+RK + + + I T+ GY F Sbjct: 174 FSREQLLDAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAF 225 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+ EDE R+ + + G+DVFEAT+G E ++V++D+ +P +G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 +R+ NV ++ LT R E DKI GL GADDYI KPF+P EL R + LL R Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + +R+ + K + +D+ ++ + G+ L +E+ + H +N + S Sbjct: 121 EKV-----KRKDSKRLKSGPFAIDLAAKQ-VTKYGQSIDLTPTEYDLICHLVQNEEIVLS 174 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 R LL + G +TVDV IRR+R+ E P P I T+ G GY++ Sbjct: 175 RDALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 4/235 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+DE LK E +++ AT+G E +I+ + ++LV+MDI +P +G Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +E+R+ N+ ++FL+ + DKI GL IGADDYITKPF+P E+ R + L R Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 LG+ +++ E Y G L+ +S L+ DG++ L E+ + +F +NP K+ + Sbjct: 121 ELGS---QQKDQEVYMLGGITLN-DSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTS 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 ++ +++ E + T+ V IR +R+ E P P I + G GY+ D E Sbjct: 177 QDIYQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYKAESDYE 231 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 L+V+D+ R + E G+DV EA DG L ++ ++++++D+ LP +G + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 67 RELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 E+R + + ++ LT +E D+I+GL+ GADDY+ KPF+PREL R R +L R Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL-- 119 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + G +D+ R + D L EF + +P ++ SR L Sbjct: 120 ---APADEGKLLRHPGLIVDVAQRRVQAGDDV-LNLTPREFDLLYFLASHPKQVFSREHL 175 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 L ++ G + RTVDV + R+R+ ++ E + T+ G+GYRF Sbjct: 176 LDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 3/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+TP IL+++DE + ++ EGY V + + + + L ++ I+LVI+D+ +PG Sbjct: 8 METPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGV 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ +RE+ N+ ++F++ + + DKI GL GADDYI KPFN EL R ++ L R Sbjct: 68 DGIQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 S + N +D N ++ D + + E+ ++ +PG + Sbjct: 128 YQVYSKPIGVDNS--IIQANDLLIDTNK-KMVSVDNRPVAVTKIEYEILVLLASHPGTVF 184 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S ++ K+ E + T+ V IR++R+ E P TP I T+ G GY+F Sbjct: 185 STEDIYTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 4/234 (1%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILI++D+ +K +AE + G E Q L E + LV++D+ +PG +G Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 E+R++ ++ ++ T +++ + K+ GL GADDY+TKPF+ EL R +L+ R Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +++ F+G ++D+ +RS +G ++LP EF +L+ ++ GKI ++ Sbjct: 138 RFNQQAG---AIQKLNFDGLQIDLENRSATTSNG-TFELPPKEFDLLLYCAKHQGKILTK 193 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ +++ G E D + I R+RK E P +P+ I T+ G GYRF ++ Sbjct: 194 QQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 134/237 (56%), Gaps = 1/237 (0%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + HILI++D+ + + A +G + Q+L + + +L+I+DI LPG + Sbjct: 9 RKNHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGID 68 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL L + +R+ + ++ L+ ++ D++ GLE+GADDYI+KPF+ REL R + L RT Sbjct: 69 GLDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRT 128 Query: 122 MNLGTVSEERRSV-ESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ S + F+ W LD N+ SLI D L + E+ +L F E+PG+I Sbjct: 129 QGDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRIL 188 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R +L+ + ++ DRT+DV I R+RK E P P+++ TI G GY+F ++ Sbjct: 189 NRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFKTKVD 245 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 4/230 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE RN L+ EG++V EAT+G E ++ + + +++++D+ LP +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++RE+ +VA++ LT R DK+ GL IGADDY+TKPF P EL R +L+ R+ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 ++ + + +F + R +I D + + EF + ++ + SR E Sbjct: 135 QSIRRQEAA---LEFPHLRILPEGREVIIHD-HSVEFTQKEFDLFISLAKSEQRAFSREE 190 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 L+ + G E + R VD I+ IR+ + I T+ G GY+F G Sbjct: 191 LVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNG 240 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 12/233 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE R + + E G+ EA D L+E +L+++D LPG +G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 65 LARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + L+ ++ ++ ++ LT R E D++ GLE GADDYITKPF+P+EL R + ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E + G LD S ++ E ++ +EF+ + F +P ++ S Sbjct: 124 SPMA-------VEEVIEMQGLSLDPTSHRVMT-GEEPLEMGPTEFKLLHFFMTHPERVYS 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R +LL + G + DRTVDV IRR+RK E ++ T+ G GYRF Sbjct: 176 REQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFST 227 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 3/236 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +LIVED+ ++ EA G+D DG E+ +L + +L+++D+ LPGK+ Sbjct: 3 EKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKS 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + RE+REQ ++ ++ +T R VDKI GL +GADDYI KPF+P EL R L + Sbjct: 63 GYDICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQY 122 Query: 122 MNLGTV--SEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + E+ E + +NS + + K P EF + NP + Sbjct: 123 DRMMRKIPEEKTEEPEEICVADLRILVNSWK-VYKGEREIKFPNREFELLKFLAMNPNIV 181 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR +L +K+ G + TV V I RIR+ E P+I+ T+ G GYRF D Sbjct: 182 FSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 10/233 (4%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 ILI+ED+ V LK FE EGY V A DG ++ L+++D+ LP N Sbjct: 3 HAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVN 62 Query: 62 GLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 G + R LRE+ + ++ LT + E D +LGL++GADDY+TKPF+ +EL R L R Sbjct: 63 GYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + +++ Y F D +R+L+ +G+ L EF + N G+ Sbjct: 123 --------QRKQTGTVYTFGDCRFDTTARTLV-RNGQDVPLSPKEFDLLTFLVTNAGRAL 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR ++ + G + + R++D + +R E P P I+ T+ GY+F Sbjct: 174 SRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 4/237 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +LIV+DE +KS E EG VFEA DG + ++ + +L+++D+ LP Sbjct: 3 EEKKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMT 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + +R+++ V ++ LT + +E I GL +GADDYITKPF+PREL R + R Sbjct: 63 GEEICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR- 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 L + S+ N +D+ + I +GE L +++ ++ + P K + Sbjct: 122 --LNEEVVPLSNEISFNDNDLVIDMLKKE-IRKNGENIGLTSRQYKILMTLLKYPNKTFT 178 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R EL+ G + +DR VD ++ IR+ E+ P P+ I T+HG GYRF G+ + Sbjct: 179 REELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 12/234 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD-INLVIMDINLPGKN 61 +L++EDE R+ LK+ E GY V A +G E + +E I ++++DI LP + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G L + +RE + V +M +T R E DK+LG E+GADDY+ KPF+PRE+ R + +LSRT Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + ++ G +D++SR + DG++ +L EF + +N GK+ S Sbjct: 122 YG-------SQDDGKTEYQGIVMDVHSRE-VTVDGKKIELTPKEFDLLKLLLDNKGKVVS 173 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R + L ++ G + RTVD I+++R+ +I T+ G GY+ GD Sbjct: 174 REKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 9/245 (3%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M++ HI +++DE+ L + ++ G+ V + +G + ++ +LV++D+ LPG Sbjct: 1 MKSAFHIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G +AR +RE L+ +TGR + VDK++GLE+GADDY+TKPF+ REL R + +L Sbjct: 61 EDGFSIARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLR 120 Query: 120 R--------TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLH 171 R + + S + +F GW+LD+ +RSL P G+ L EF + Sbjct: 121 RLAPDDAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCA 180 Query: 172 FCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 F +PG++ SR LL++ GRE P DRT+DV + R+RK E+ PD P+I+ ++ G GY Sbjct: 181 FARHPGRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYI 240 Query: 232 FCGDL 236 + Sbjct: 241 LVPPV 245 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 +ILI+EDE + +K+ E EGY V+ +G + ++ + I+LVI+D+ LP +G Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + + LR+ ++V + LT + DKI GL IGAD+Y+TKP +PRELT R L R Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 123 NLGTVSEERRSVESYKFNG--WELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + FN +D++ R L+ GE+ L +EF + N GK+ Sbjct: 121 --------CKKENVISFNDNKLIIDVDKR-LVKLSGEEINLTPNEFDILYILASNQGKVF 171 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R ++++ G E DR++DV I+ +RK E +P+ I T+ GY+F Sbjct: 172 TREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 17/235 (7%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEG-YDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 I+I+ED+ +++ E EG + V T G + + E+ NL+++DINLP N Sbjct: 2 KRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMN 61 Query: 62 GLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLL 118 G + R LR A+V ++ LT R +E DKI GL +GADDYITKPF+ REL R +L Sbjct: 62 GFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVL 121 Query: 119 SRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGK 178 RT + Y +D N ++ G++ L R EF + ++ G+ Sbjct: 122 RRTEGTPSS--------VYDDGTLFIDYN-HFVVRCQGQEINLTRKEFALLKLLAQSKGR 172 Query: 179 IQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +R LL ++ G + RT+DV IRR+R+ I T G GYRF Sbjct: 173 VLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFV 223 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 124/239 (51%), Gaps = 6/239 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 MQ ILIVEDE + R L+ FE E Y+V A DG E + +L+++D+ LP K Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + R +R++ ++ LT + E K+ GL++GADDY+TKPF+ EL R + L Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLR 120 Query: 120 RT--MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 R +++ SV++ F LD + G +L EF+ + +F + G Sbjct: 121 RIDLQTQANPTKQLASVDAIDFADIHLDFKKF-IATKGGVPLELSTREFQILKYFWQRRG 179 Query: 178 KIQSRAELLKKMTGR--ELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ R +LL+ + G E P RT+D I +R+ E P+II +I G GY+F Sbjct: 180 EVVLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 26/256 (10%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+D R + + EG++V EA +GA+ ++ + D +L+I+DI +PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R++RE +N ++FL+ R E DK LG G DDY+ KPF+ EL R++ L+ R Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 121 TMNLGTVSEERRSV------------------------ESYKFNGWELDINSRSLIGPDG 156 +E F+ E++ R + +G Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVRE-VHKNG 179 Query: 157 EQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRE-LKPHDRTVDVTIRRIRKHFEST 215 + L +E+ + N + S L + + + TV V IR +R E Sbjct: 180 QLLDLTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDH 239 Query: 216 PDTPEIIATIHGEGYR 231 P PE+I T+ G+GYR Sbjct: 240 PGNPELIKTVWGKGYR 255 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 11/241 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE L+ E +GY V A G + +I+ +LV++D+ LPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQANV---ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL +AR +R + ++ L+ + E D I GLE+GADDYITKPF+P+ L R R++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R + R + +G + + + +G++ L SEF + PG Sbjct: 121 LRRQQAKAAPPDPGR---TIAVSGITIHPRKHT-VEVNGKKIDLTPSEFDILSFLASRPG 176 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + +R +++ K+ G DR+VDV I +RK E E I T+ G GYRF ++E Sbjct: 177 LVFTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFR-EIE 232 Query: 238 D 238 + Sbjct: 233 E 233 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG- 59 M+ ILIV+DE +K A GY V A DG ++L +L+I+DI LPG Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + + +RE +++ ++ LTGR E D+I G + GADDY+TKPF+ EL +R + +L Sbjct: 61 LNGFEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ SEE YKF ++ + + G + +L +E++ + H N GK+ Sbjct: 121 RSH----PSEEFPKGPVYKFGDLVINFAQKRVF-VRGREVRLTATEYQVLYHLGCNAGKV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +LL ++ G E + + I +RK E P P+ I HG GY Sbjct: 176 ITHEDLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 126/238 (52%), Gaps = 1/238 (0%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLP-G 59 MQT IL+V+D+ + EGY A DG M + L+ +L+I+D++ P G Sbjct: 1 MQTQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 ++G+ LAR++R + + L+ L+GR VDKI+ LEIGADDY+TKPF PREL R R +L Sbjct: 61 EDGITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R S + F GW LD+ R L PD E L EF + + G++ Sbjct: 121 RARPTPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRV 180 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +R ++L + R P DR++DV I ++R+ +II T+ G GY F E Sbjct: 181 LTRDQILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVFTLSPE 238 >UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacillaceae RepID=Q5WBT6_BACSK Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 6/238 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M+ ILIV+DE+ L+ E E + + +AT G E Q+ E NL+++DI LP Sbjct: 1 MEHAKILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPD 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G L E+R + ++F++ R + DK+ GL IG DDYITKPFNP E+ R + +L Sbjct: 61 ISGFELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R E Y + + S +++ + + E + FCENP +I Sbjct: 121 RQKMY----ERSEKKPVYDYGYFAFYPES-AILMVQNQTVECTAKELELLHFFCENPNRI 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + A+L +++ G ++ ++TV + I ++RK P+II + G GY+F E Sbjct: 176 FTTAQLYERVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPNE 233 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE---YDINLVIMDINLPG 59 IL+V+DE R L+ EAEG+ V EA DGA L ++LV++D+ +PG Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + R LR A+ ++ +T R EVDK++GL +GADDY+TKPF+PRE+T R +++L Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + T + R +F+ +D R I DG +L EF + PG++ Sbjct: 121 RRRDGTTGDDPR-----LRFDELTVDPIGRE-ITVDGAPVRLTALEFDLLHALVRAPGRV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SRA+LL+++ G + +R VDV IR +R P +IAT+ G GY+F G Sbjct: 175 FSRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 11/238 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P IL+VED+ L+ E+EGY V A DG ++ E + L+I+D+ LP Sbjct: 1 MNNP-ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRM 59 Query: 61 NGLLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + + LR + V ++ LT R + DK+ GL +GADDY++KPFN EL R +L Sbjct: 60 SGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 RT + + + E+D R + + ++ L EF+ + + G+ Sbjct: 120 RTH-------QSKPSQHVSVGDLEIDFQ-RLSVCKNRQKLDLSSREFQVLECLFRSAGQT 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF-CGDL 236 R ++ +++ G + +RT+D I R+R E P P I T+HG GYRF ++ Sbjct: 172 VDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPEV 229 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 12/239 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+V+DE R+ L+ E Y V EA D + H ++ + +L+++D LPG Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 61 NGLLLARELRE---QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ + + ++ LT + E +K+ GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L RT ++G E + G LD S + ++ +E+R + F + Sbjct: 121 LRRTDSMG-------ISEPIQVEGLCLDPISHR-VTISDMPVQMGPTEYRLLEFFLTHQE 172 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ +R +LL + G + +RTVDV IRR+RK I T+ G GYRF + Sbjct: 173 RVYTRNQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRFSNKV 230 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HILIVEDE L+ E EGY V +G E +E +LV++D+ LPG Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL + R LR+ + ++ LT RD+ DK+ GL+IGA+DY+TKPF EL R R L Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 ++ ++ ++ +R + ++ +L EF +++ ++P ++ Sbjct: 121 -----QNGTKTEDIGTFLTYDDLRVNEKTRE-VRRGDKEVELTPREFDLLVYMLKHPQQV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +R ++L + G + VDV IR IRK P ++I TI G GY Sbjct: 175 LTREQILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P ILIVEDE + L EG++ A G E +LS + I+L ++D+ +P +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR-T 121 ++LRE + + ++FLT R +E D+I GL +G DDY++KPF+ EL R + +L R Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E G +L+ +RS + D L EF +L E+ G++ + Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARS-VKVDQIPISLTVKEFDLLLFLFEHQGQVFT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 R LL + G + + +RTVD I+ +R + + +I T+ G GY+ D+E Sbjct: 180 REHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV-DIE 231 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HI IV+D++ R +++ + EGY E + E +L ++DI LPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG R +R + ++ ++ RD EVDKILGLE+G+DDY+TKPF+PREL R L R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + + +E+ + LD R L+ GE+ ++ EF+ + E+P + Sbjct: 121 WKQMKSHAEQTA------ISALVLDKEKR-LVYSFGEEVEVTSKEFQVLSLLSEHPNRAF 173 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR ELL + G + DR VD IRRIRK + P + T+ G GYR Sbjct: 174 SRDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 11/240 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE ++ + EGY A G E + +LV++D+ LPG Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G + R +R A + ++ LT + E D + GLEIGA+DYI+KPF+PREL R R + Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L R + + + + +D+ ++ D L SEF+ + G Sbjct: 121 LRRRTRVEKPATQA----TVIAGPLSMDVGRHRVV-VDKNALDLTHSEFQVLWFLVTKKG 175 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + +R +++ + G +R+VDVTI +RK D I T+ G GYRF + + Sbjct: 176 WVFTRGQIVDAVHGENYAVTERSVDVTIAGLRKKLGPCAD---FIETVRGVGYRFREEAD 232 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 5/232 (2%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 + +L+V+DE ++ E EG V AT+G E + + E ++V++D+ +P + Sbjct: 5 KDKLVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMD 64 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G R +R + V ++ LT +D E D++ GLE+GADDY+ KPF+ REL R R +L R Sbjct: 65 GFEALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRH 124 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + V+ + +D R + DG++ L +E+R + H +N G + + Sbjct: 125 YTQPPIPQTLVKVD----DRLSIDFARRE-VLVDGKRVNLRPTEYRLLYHLVQNAGYVLT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 LL K+ G E + + + I +R+ E P P I T G GYRF Sbjct: 180 HEMLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 13/241 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGK 60 T +L++ED+ + Y+V A E + L I+LVI+D+ LP Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67 Query: 61 NGLLLARELREQAN-----VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRAR 115 +G+ + + +R+ + A++ LT + + D++LGLE+GADDY++KPF PREL R R Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 116 NLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 ++ R + ++ ++ F ++ +S + D E +L +F+ + +F + Sbjct: 128 AVMRRH----DLPLHQQKEDNLVFGRLKVYPDSHE-VTIDDEPVRLTTHQFQLLHYFATH 182 Query: 176 PGKIQSRAELLKKMTGRE-LKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GK+ SR +L M + DR +DV I R+R E P P+ I T+ G GY+F Sbjct: 183 SGKVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 242 Query: 235 D 235 D Sbjct: 243 D 243 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 126/233 (54%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +LIV+D+ R L G + A G M +S+ + +LVI+D++LPG+NGL Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L RE+RE +N+ ++ LT R D+++GLE+GADDY+TKPF REL R +L R+ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRAD 147 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 +F W L+ R L+ + L +EFR +L F E+P ++ R Sbjct: 148 VRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDREM 207 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 L+ GR+L DR++D+ + R+R+ P +I T+ GEGY F G +E Sbjct: 208 LINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVFTGTVE 260 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 I+++EDE N L ++ GYD F A DG + Q++ +LV++D+ LPG +G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + + ++ E A++ ++ LT R +EVD+ILG E+GADDY+ KPF+PREL +R + +L Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R +N+ + +G D + +L DG L +EF F N GK+ Sbjct: 122 RNVNILPKVAHWQR------DGLAADFEAYTL-LVDGVDAHLTPTEFNLFGEFVRNEGKV 174 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 SR +LL G E + + RTVD +RR+RK D + T+ G GYR Sbjct: 175 LSREQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 6/237 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILI+EDE + L EG++ A G++ + L + +L+++D LP + Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +GL + +++ Q N+ ++ LT R + DKILGLE+GADDYITKPF+ RE+ +R R +L R Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 +E F + R L+ GE L EF +L G+I Sbjct: 121 LAQAQAPVKEAAPS-VIGFRDIVVSRAER-LVTKKGEAVDLTPKEFDLLLALLGVRGRIF 178 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +RAELL+ + G + RTVD I+R+RK D ++I T+ G GY+F E Sbjct: 179 TRAELLESVWGYDFPGDMRTVDTHIQRLRKKL----DAADLITTVFGIGYKFEKRTE 231 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 117/235 (49%), Gaps = 3/235 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+ ED+ R L I E EGY V A DG E +I E +L ++DI +PG Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 61 NGLLLARELREQ-ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + RELR + +A++ LT + E+DK++GLE+GADDYITKPF EL R +L Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ + + +D + ++L E + + F +P + Sbjct: 121 RSRRTAPGAAGELPS-TLAIGPATIDRKTYRGC-LGTRNFRLTAREMKLLEAFYRHPDEA 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R LL G + + RT+D I ++RK E P P++I T+HG GYR+ Sbjct: 179 LPRNTLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVA 233 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 127/237 (53%), Gaps = 13/237 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M ILIV+DE R + E GY+ EA + + H ++ + +L+++D LPG Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 61 NGLLLARELREQA---NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +G+ LAR L+ ++ ++ LT + E +KI GLE+GADDYITKPF+PREL R + + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 118 LSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPG 177 L RT + + + G LD S + DG+ ++ +E+R + F + Sbjct: 121 LRRTGPGDSEAP-------IEVGGLLLDPISHR-VTIDGKPAEMGPTEYRLLQFFMTHQE 172 Query: 178 KIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 + +R +LL ++ G + +RTVDV IRR+RK + ++ T+ G GYRF Sbjct: 173 RAYTRGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFST 227 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 117/233 (50%), Gaps = 8/233 (3%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 ILI+EDE+ R LK E EGY V A DG E + + +LV++D+ +P +G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 63 LLLARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 L ELR AN V ++ LT + D++ GL+ GADDY+ KPF+ EL R R +L R Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 E+R+V + +F E+D+ ++ + E+ + E PG+ S Sbjct: 121 QR------EKRAVATLRFGEVEIDMVKQTA-RRGRKDLHFTAKEYAMLRLLSEAPGEPIS 173 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 R L + G P RTVD I +R ES P+ P I T+HG GYR G Sbjct: 174 RERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 8/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T ILIV+DE RN ++ +GY++ EA +G E + + + L+I+D+ +P Sbjct: 1 MDT-KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEM 59 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + E+R++ + ++ LT R DK+ GL+IGADDY+TKPF P EL R LL Sbjct: 60 DGWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLR 119 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R V + + F+ ++D++ + D L EF + NP ++ Sbjct: 120 RA-----VVNQTTQTKQLHFHELKMDVDDHKVFVQDN-PVHLTPKEFELLKLLLLNPKQV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +R +LL K+ G + +RTVD I+ IR + + II T+ G GY+ Sbjct: 174 FNRDQLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 2/233 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 ILIV+DE L+ E EG+ + EA DG + ++ I+L I+DI +P NG Sbjct: 4 TILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L + +R++ + ++ L+ ++ E+DKI+GL +GADD+I+KPF+ E+ R + L RT + Sbjct: 64 LIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 T + ++ + LD +S ++ G + KL E++ + F PG+I ++ + Sbjct: 124 NTDLLNQEGSQT-CIDDLVLDHHSC-ILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQ 181 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 + + + D T+ V I R+R+ E P P + TI G GYRF E Sbjct: 182 IFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL++ED++ N ++S E Y V ++ G E + + +L+I+DI LP +G Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + + +R +NV ++ L+ + EVDK+ GL++GADDYITKPF+ EL R N + R Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 125 GTVSEERRSVESYKF-NGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 +++ +++ NG + + + D ++ +L EF ++ +N K+ ++ Sbjct: 124 NKKTDDNS---IWRYKNGLTIIKDEMK-VLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 EL + + ++ + T+ V ++ +R+ + P+ I T+ G GY+F G+ Sbjct: 180 ELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL+V+D+ + +EGY+V A DG E + L + +LV++DI +P +G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 + +++RE+++V ++ LT + VDK++GLE+GADDYITKPF+ +EL R + +L Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL---- 117 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 E R + E+D N+ + + DGE L +EF+ + PG+ +R Sbjct: 118 RRLGRREGGRRDGVLRLGPLEMDTNAYT-VTRDGEPLDLTPTEFKILALLLRRPGQAFTR 176 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 A++ + ++ R +DV I R+R E P PEII T+ GYR Sbjct: 177 AQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 126/232 (54%), Gaps = 3/232 (1%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HIL+V+DE R L +G+ + EA A +L ++ ++DI +PG++GL Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L R L E ++ ++ LT R D+I+GLEIGADDY+TKPF PREL R R++L R Sbjct: 72 LTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA 131 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 V E Y F GW+LD R L PDG + +EFR + F ++P K+ R Sbjct: 132 PAVDAEDA---FYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDR 188 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 LL + GRE DR VD + R+R+ E+ P I T+ G GYRF D+ Sbjct: 189 LLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADV 240 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 11/236 (4%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 + IVEDE + LK+ E GY V A +G E + E + + VI+D+ LP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 + +++R ++V +M L+ + +E D+I G+ IGADDY+TKPF+PRE+ +R +L RT L Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 125 GTVSEERRSVESYKFN--GWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 +E + FN +D + + + E L EF + ++PG++ SR Sbjct: 124 N-------KMEIFSFNKKEIIIDFIKKE-VLLNNETISLTPIEFNIITIMAKHPGRVFSR 175 Query: 183 AELLKKMTGRELK-PHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 A+LL+K+ ++R++DV I+ +RK E P+ I T+ G GY+F G + Sbjct: 176 ADLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGKRD 231 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 115/237 (48%), Gaps = 2/237 (0%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL++ED+ N ++ ++ Y T G E + ++VI+D++LP +G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 63 LLLARELRE-QANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + + R +R N + +T R+ E+D+I+GLE+GADDYITKPF+ REL R R Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + + ++D R + D + R EF + +PGK+ S Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDN-IVNISRKEFDILQLMAASPGKVFS 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 R +L+ + G E +R +D ++RIR E PE I TI G GYRF + ++ Sbjct: 180 REMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDNYDN 236 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 131/235 (55%), Gaps = 13/235 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+V+D+ N +K+ E E ++V A M + L +L+++DI LP +GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 65 LAREL-REQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ++L R+ + ++FLT R +++D ILGLE+GADDYITKPFNPR L R + + R Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + K E+D+NS S+I DG++ +LPR EF + ENPGK+ +R Sbjct: 122 GP------KDRNVVKLGDIEIDMNSYSMI-KDGKKEELPRKEFELLKLMIENPGKVFNRQ 174 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 E+L ++ G + RTVDV I ++R+ S E I T+ G GY+ ++ Sbjct: 175 EILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVIPEDE 224 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ IL+ ED+ N++ E EG+ V A DG E ++ +L+IMD+ +P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G ++LR+ + V ++ L+ + + DK++GL IGADDYITKPFNP EL R + L R Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ S E + +L+ ++ D + L E++ + +NP K+ Sbjct: 121 YHSYDNLA----SSEIIQIGNIKLNTFEKT-CSVDDKIINLTSLEYKILEFLMKNPNKVF 175 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 S + + + E +TV V IRRIR+ E P P I G GY+F Sbjct: 176 SIESIYEHVWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFV 227 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 11/234 (4%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 + I ++ED+ ++ ++ GY + + A + L ++DI +PG +G Sbjct: 2 SQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDG 61 Query: 63 LLLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + R LR +++ ++F+T R E D++LGLE+GADDYITKPF PREL R + +L Sbjct: 62 LDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLR 121 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R T S F +D ++ L GE +EFR + + +PG++ Sbjct: 122 RFERPSTPS-------LISFEDVVIDASAMQL-KVRGELTTTTATEFRLLDYLARHPGRV 173 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR LL + G R+VDV +RRIR+ ES P+ P + T+ G GYRF Sbjct: 174 FSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 P I I +D+ R L + EGY + A +G E+ + S I+L+I+D+ +P Sbjct: 3 SQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMG 62 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G+ E+R+ + ++ LT + +++D + G+ +GADDYI KPFNP E+T+R ++LL R Sbjct: 63 GIEACIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRY 122 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + G S+ + F LD+ +R D +L EF + +F +P ++ + Sbjct: 123 RDYG--SDRADLTSTLVFENVTLDLQTRQ-CRKDEMLIRLTPKEFDILAYFMRHPNQVLT 179 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 ++ + + G D TV V I +IR+ E TP P II T+ G GYR Sbjct: 180 VEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 H+LIV+D+ R + + G V A DG +M L ++++++DI LPG +GL+ Sbjct: 6 HVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + ++ LT R +E D+I+GLE+GADDY+ KPF REL R + +L RT Sbjct: 66 LCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + + F W+LD +R L+ G L +E+R + F ++P ++ SR Sbjct: 126 MLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL GRE + DR++D+ + R+R+ P I T+ EGY F Sbjct: 186 DQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 5/238 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL VEDE L+ E EG++V A GA+ Q LSE + +I+D+ LP + Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG + ++LR++ L+FLT RD+E+D+++GLEIGADDY TKPF+ RE+ R + + R Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 121 ----TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 N+ + + + W + S I G+ +L R E+R + ++P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQ-IQYHGQILQLTRYEYRLLFLLIQHP 180 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 K+ SR +L+ + +RTVD I+ +R+ + + I T G GY Sbjct: 181 EKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 4/233 (1%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M T IL+++D+ L + EGY + A G + + + + +LV++D+ +PG Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + +RE + V ++ LT + E D+ILGLE+GADDY+ KP++ REL R + LL R Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E+ NG EL+ ++ + DGE + SEF+ + GK Sbjct: 121 IELDKNQKEDDNG--ILACNGVELNFDTYR-VYSDGEHIPMTTSEFKVLRVLMSRAGKAV 177 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 + +L ++ GRE+ +DR++D+ + +R+ T + + I TI G GY F Sbjct: 178 PKEDLYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFV 229 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 7/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP ILIV+D+ RN + + Y + A DG + +++ LVI+D NLP NG Sbjct: 8 TPKILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLPDVNG 66 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L +E++ + NV ++ LT R +E DKI L GADD++TKPF+ E+ +R LL R Sbjct: 67 YSLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIR 126 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 + +R F ++ R +I + + L EF + +P + SR Sbjct: 127 YINPSPTQR-----IIFKQLVINPEGREVI-LNDKLLGLTALEFNILHFLASHPNQAWSR 180 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +L++K+ G + R VDV I ++RK E P PE I T+ G GY+F E+ Sbjct: 181 PQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFEAPDEN 236 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 LIV+D++ R L + TDG +M Q L++ ++V++D+ LPG++GL L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 67 RELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLGT 126 R LR +++ ++ LT R D+I+GLE+GADDY+ KPF PREL R + +L R Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVR---- 148 Query: 127 VSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELL 186 E + +F+ W L+ R L DG L +EFR + F E P ++ SR +LL Sbjct: 149 -DERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLL 207 Query: 187 KKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 GR ++ DR++D+ + R+R+ P P++I T+ GEGY F Sbjct: 208 DAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNG 62 IL+VED + F+ E +D A DG E + S +++ +D+NLPG +G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 63 LLLARELREQANV-ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + +A+++REQ+ V ++ LT RD+E D++LGLE+GADDY+TKPF+P L R + L R Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 122 M--------NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFC 173 V E S + + +++ +R D L EF + Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 ENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 +NP ++ SR +LL+ + + +RTVD I+++R+ E P++I T+ G GY+F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKF 238 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 150/235 (63%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 PHI++VED+ V+R L FE EGY V + + ++ Q + + I LV++DI LPGK+G Sbjct: 8 MPHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDG 67 Query: 63 LLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L L RELR + V ++ +T RD+E+D+I+GLE+GADDY+TKPFNPREL +RARNLL R Sbjct: 68 LTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA 127 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 ++F GW L+ + R L+ PDG +LP+ EF+ ++ + G++ SR Sbjct: 128 QCAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLSR 187 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +L+ + RE P+DRTVDV + R+R+ + P P +I T HG GY F G+L+ Sbjct: 188 DQLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFAGELD 242 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 TP IL+ ED+ TL + EGY V DG +L+++D+ LP ++G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 63 LLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 + ++LRE V ++ LT R VDK++GL+ GADDY+TKPF EL R LL R Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + +++ G +D R+ + G+ L E+R + + ++ G+ + Sbjct: 122 -----PVRRSLNAGTFQLGGIAVDF-RRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVT 175 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R +LL ++ G RTVDV + +R+ E P P + T+ G GY+ + Sbjct: 176 REDLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 17/244 (6%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M IL+VEDE +TLK E ++V A +G +I E++ +LV++DI LP Sbjct: 1 MLKKKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDI 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L + + +++ ++ LT RD+ +DKILG+EIGADDYITKPF RE+T R + R Sbjct: 61 SGFELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRR 118 Query: 121 TMNLGTVSEERRSVESYKFNGW-------------ELDINSRSLIGPDGEQYKLPRSEFR 167 +E + N ++ ++R++I DG++ L R EF Sbjct: 119 VSKNIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVI-KDGKEIMLKRKEFD 177 Query: 168 AMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHG 227 + + +N G + +R +LL ++ G + RTVDV IRR+R + + I+ T+ G Sbjct: 178 LLSYLYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKEN-SIVETVFG 236 Query: 228 EGYR 231 GY Sbjct: 237 VGYV 240 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 11/229 (4%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 +LI+ED+ ++ E GY A DG + E + + +DI LP +G L Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 66 ARELR-EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 +E+R + + ++ LTG+ DKI GL+IGADDY+ KPF+P EL R + ++ R L Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + G +D D ++ +P E + + P ++ +R + Sbjct: 128 N------DEDQVVSLLGLVVDKKEYKAAAGD-KEITMPPKELDLLYYLASYPNQVFTRQQ 180 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHF-ESTPDTPEIIATIHGEGYRF 232 LL ++ G + RT+DV I+RIR+ E+ I TI G GY+F Sbjct: 181 LLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAK--WTIKTIRGVGYKF 227 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 P+IL+V+DE ++ E GY V A DG ++ + +L+++D+ +PG +G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 63 LLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 + R L+ + ++ L+ R +E+DK+LGLE+GADDYITKPF+PREL R L Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R + + +D S I G++ L EF + PGK Sbjct: 121 RDKKEEFIIPRDSKNIIMR-GKLIIDKECMS-IELGGKKQYLKAKEFELLYFLACQPGKY 178 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR LLK+ ++ RTVDV IRRIR+ E + I T G GYRF Sbjct: 179 FSRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFI 232 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 5/236 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +L+V+DE ++ G+++ +G + +I + +L+++D+ LP Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60 Query: 61 NGLLLARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 +GL + R +R ++ LT + E DK++GL +GADDYITKPF REL R R + Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120 Query: 118 LSRT-MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENP 176 L R + T +E + +D+N ++ E + SEF+ + E+ Sbjct: 121 LRRVMDSKSTTAETATDTNIIQVQDITIDVNRH-IVKKQDEIIEFTLSEFKILKKLAESL 179 Query: 177 GKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 + SR+ LL+++TG + P R VDV IR IRK D+P+ I TI G GY+ Sbjct: 180 EHVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 6/231 (2%) Query: 1 MQTP-HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPG 59 M P I IVEDE L+ E EG++ +G ++ + + + +LV++D+ LPG Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G+ + + +RE +++ ++ LT +D DK+ GL+IGADDY+TKPF EL R RN L Sbjct: 61 MDGMTICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + E + + + DGE L + E+ + + N + Sbjct: 121 ---KHVPDNGGVPLEERLQVKNLVMYPKRYE-VEVDGETVHLTKKEYSLLEYMMRNKRTV 176 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGY 230 +R ++L+K+ G + VDV IR +R + I T+ G GY Sbjct: 177 LTRDQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 ILIV+DE + +K FE +GY V A++G E + + I+++++DI +P +G Sbjct: 3 EKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGF 61 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + +++R++ + ++FL+ R +E+DKI GL +G DDYI KPF+ +EL R + L R Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + + F LDINSR + + E+ EF + +P ++ S+ Sbjct: 122 IPLNNRSK-----ISFGKLTLDINSRK-VHYEEEEILFTAKEFDIVELLALHPEQVFSKE 175 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 ++ +K+ G + + TV I++IR F + IAT+ G GYR+ Sbjct: 176 QIYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 IL+VEDE + A + VF A + + +L I+LV++D LP +GLL Sbjct: 22 QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81 Query: 65 LARELREQAN-VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++LR + +M LT RD E D +LGLE GADDY+TKPF+ EL R + LL R Sbjct: 82 LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRH-- 139 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + + +F G +D++SR +I D L EF + +P ++ SR Sbjct: 140 ----LSAAPTRQLIEFEGLRIDLDSREVIAFDN-PLSLTAKEFDLLTFLARHPQQVFSRT 194 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +LL + G + TV+ I R+R P + E++ T+ G GY+F Sbjct: 195 QLLDAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKFT 244 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYD-VFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+V+D+ N L + FE EG+ + A G+E + + N++++D+ LP +G Sbjct: 7 KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 L ++R NV ++FLT + ++DK+ G G DDYITKPFNP E+ R + L R Sbjct: 67 TLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMTQ 126 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 L S + Y + +++D N+ L+ +G + P E + +++FCE+P +I S+ Sbjct: 127 L---SSSYPLKQVYDYEYFKIDPNTGRLV-VNGTRIDCPAQEMKLLIYFCEHPNQILSKH 182 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 ++ K + G E D TV V +RR+R+ E P P I T+ G+GY F + Sbjct: 183 QIYKDVWG-EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFEAEP 234 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 10/235 (4%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M P +LI+ED+ LK FEA+ Y V A DG E +LV++DI LP Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 NG + R +R + ++ ++ LT + E D I GLE+GADDY+TKPF+ REL Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLA------- 113 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + + ++F +LD+ + L G++ +L EFR + F PG+ Sbjct: 114 -RAAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQ-GGKEIELTTKEFRLLEFFATRPGRA 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 +R ++L + G ++ +DR+VD + +R E+ P P +I TI GYRF Sbjct: 172 LTRDQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFES 226 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 6/236 (2%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGK 60 T +L+V+D+ TRN LK+ E Y+V A DGA + + ++LVI+D+ LP Sbjct: 11 TRTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDT 70 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G L R +R Q+ V ++ LT ++ D+I+GLE+GADDYI KP+NPREL R + + R Sbjct: 71 DGFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRR 130 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + V KF G+ +D+ R L P G+ L +F + F E+ G+ Sbjct: 131 MQLGAPGAP----VRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETL 186 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDL 236 RA L+++ GR+L P DR++DV + R+R+ P +I T+ G GY F D+ Sbjct: 187 DRARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADV 242 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 122/239 (51%), Gaps = 7/239 (2%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ +LIVED+ + + + V + ++++ L+++DINLP Sbjct: 1 MRHEKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQM 60 Query: 61 NGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +GL L R+++E +++ LT +++D+++GLE+GADDYI KPF REL R + L Sbjct: 61 DGLSLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLR 120 Query: 120 -RTMNLGTVSEERRS---VESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCEN 175 R L + + + S ++ K ++ +S + + L +EF +++F + Sbjct: 121 HRAQLLASQNTDEPSVASEQTLKVGSLNIEFDSHQ-VYLAEQAINLTATEFDLLVYFARH 179 Query: 176 PGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 P + SR +LL K+ G + ++ TV+ I R+R E TP II T+ G GY+ Sbjct: 180 PNHVFSRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNP 237 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +LIVEDE LK EGY V G E+ + +++++++DI LP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G + RE+R+ ++V ++ +T + EVD+I+G E+G DDYI KPF+PRE+ R +L R Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 T + S + +L+ SR + +G + L SEF E+P ++ Sbjct: 121 TFK-------KSSDDVLALGPVQLNKTSR-IAEINGNELSLTPSEFDIFSVLLESPNRVF 172 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +RA+L++K+ G ++RT+D I+ +RK +II + +G GY+ Sbjct: 173 TRAQLIEKVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 +L+V+DE ++ E GY V +G E+ L + +LVI+D+ LPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 65 LARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNL 124 L ++++E+ ++ ++ +T + E + +LGLE+GADDY+ KPF+ REL R R++L RT Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 125 GTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAE 184 + + L++ + + + L E++ + F NPG +R + Sbjct: 131 EEEEQFEGN---ITIGNIFLNLKAHKAF-INNFEVDLTLIEYKILNLFMTNPGVAFTRDK 186 Query: 185 LLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232 LL ++ G+++ DR VDV I+R+R E + TI G GYRF Sbjct: 187 LLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRF 231 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 114/231 (49%), Gaps = 13/231 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M+ HIL+VED+ + +K + Y V A+DG E ++ +L+++D+ +P Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 NG +++ +R Q+NV ++ LT + E D++ G ++G DDYITKPF+ L R +L R Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 + ++ F +D+++ + + + L EF + +N K+ Sbjct: 121 SY-------DKNVNNHLIFKEVRIDVDAYR-VYVNDVEIILTTKEFEILQLLFQNERKVL 172 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYR 231 +R +++K+ G + R +D I+ +RK I TI G GY+ Sbjct: 173 TRENIVEKVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYK 218 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 4/234 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 T H+LIVED+ + G V DGA + +LVI+D+ LPG++ Sbjct: 6 HTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 G + R +R++ + ++ LT R ++ D I GL+ GADD++ KP +PR L R + LL R+ Sbjct: 66 GFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRS 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQS 181 + E + F +D R + + +L +EF + N G+ S Sbjct: 126 EAPQVPAAE---LRRLVFGPLVVDNALREAWLRE-QSIELTGAEFDLLWLLVANAGRTLS 181 Query: 182 RAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 R E+ + G DR++DV I RIR P P +I T+ +GY F + Sbjct: 182 REEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPE 235 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+++D+ + +EG+DV DG L + L ++DI +PGKNG+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 RELR+ +++ ++ LT R E+D+ILGLE+GADDY+ KP NPREL R R +L R+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS---- 118 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 +E + +F E SR+ I GE L +E+ + ++ G++ S+ EL Sbjct: 119 DTQQESDDKQETRFGSLEWHPQSRT-ITEHGEPVDLTATEYNILTVLMQHAGEVVSKYEL 177 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 + G+ P DRT+DV I +RK + +T I T+ G+ F + Sbjct: 178 SQAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 P+ILIV+D+ R + E EG+ +EA DG + Q ++E +++VI+DI +P +G Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + ELR+ ++ ++ LT + K+ G +G DDY+ KPF+P EL +R + LL R Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + S + L+ + + + LP EF + G+ SR Sbjct: 152 TVSQS--------IQVGTVLLNRKTFE-VTIGEQTVTLPLKEFELLFTLGSKAGRTCSRE 202 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 +L++ + G + + ++RT+DV I R+R+ F+ I TI G GYR Sbjct: 203 QLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLE 251 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 13/235 (5%) Query: 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNG 62 IL++ED+ + LK E EG+ + G ++ + +L+++DI LP +G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 63 LLLARELREQAN---VALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 L + + +R+ + + ++FLT R +E D+I+GLE+GA+DY+ KPF REL R + Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 + + G ELD S + +G L +EFR + PG + Sbjct: 126 ---------NQATPARLLEAGGVELDRTSCQ-VRLNGVPLALTATEFRLLEFLMNRPGVV 175 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 SR +LL + G++ DR VDV + R+R+ E P +P +I ++ G GY F Sbjct: 176 FSREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 2/235 (0%) Query: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLL 64 HILIV+D+ R + + G DG +M L ++L+++DI LPG +GL+ Sbjct: 6 HILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDGLV 65 Query: 65 LARELR--EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM 122 L RELR + + ++ LT RD++ D+ILGLE+GADDY+TKPF REL R +L RT Sbjct: 66 LCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRRTR 125 Query: 123 NLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSR 182 L + F W LD +R L+ D L +E+R + F ++P ++ SR Sbjct: 126 MLPPNLLISETGRLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHPQRVLSR 185 Query: 183 AELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLE 237 +LL GR+ DR++D+ + R+R+ P I T+ EGY F +E Sbjct: 186 DQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVFSFAVE 240 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 3/239 (1%) Query: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKN 61 Q PHIL+V+D R+ + E G A++ EM L +L+I+D+ +PG++ Sbjct: 6 QLPHILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGED 65 Query: 62 GLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 GL AR L ++ L+ E D+++GLEIGADDY+ KPF+PREL R + +L R+ Sbjct: 66 GLSAARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRS 125 Query: 122 MNLGTVSEERRSVESYKFNGWELDINSRSLIGPDG--EQYKLPRSEFRAMLHFCENPGKI 179 ++ F GW LD ++R L+ + L +EF+ ++ F E P + Sbjct: 126 ERREPLAG-TLGGRKLGFAGWMLDTDTRDLVREADGAAKIALTTAEFKLLVAFLERPRFV 184 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED 238 +R +LL +GR + DRT+D + R+R+ E P P+II T+ GY D+ + Sbjct: 185 LTREQLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADVRE 243 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGL 63 IL+ +DE R+ L+ E GY+V EA DG + +L +++ ++DI +P +G Sbjct: 3 YTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGY 62 Query: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMN 123 + + LRE ++V ++ ++ + + +KILGL +GADDY+ KPFNP E R + R Sbjct: 63 QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122 Query: 124 LGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRA 183 + ++ +R + + ELD + + +GE +L E+R M F ++PG++ ++ Sbjct: 123 MA-AAQPKRPAKVLRCRNLELDQEAC-ALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQ 180 Query: 184 ELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCG 234 ++ + + + +V V + R+R I TI G GYR Sbjct: 181 QIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLEK 229 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGK 60 M +I IVED LK E + V + G E+ + +L+++D+ LPG Sbjct: 8 MINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGA 67 Query: 61 NGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 +G+ L RE+R + V ++ +T + E+D++LGLEIGADDY+ KPF+PRE+ R + +L R Sbjct: 68 DGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR 127 Query: 121 TMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQ 180 E + L + S I G+ K+ +SEF + F +PGK+ Sbjct: 128 -------GGEEPHEAAIHIGPLLLKPETHS-ITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 SR EL+ K+ GR + +DR +D I+ +RK + E I +++G GY+F + Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILE 234 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 3/230 (1%) Query: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 IL+VED+ R + +E Y V A DG +I Y +++++D+ LP +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 66 ARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTMNLG 125 + +R + V ++ T +D++ DK+LGL +GADDYITKPF+ EL R + + R Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 126 TVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAEL 185 + + ++ ++I+ ++ G L +EF + N G+ S+ +L Sbjct: 123 SSRNSQDM--VIQYKDLIINISKY-VVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 186 LKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGD 235 + ++ ++ I R+R + I T+ G GY+ + Sbjct: 180 YNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 13/234 (5%) Query: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-SEYDINLVIMDINLPG 59 M+ +L+V+DE R +K YDV EA +G + I + DI+L+I+D+ +P Sbjct: 1 MERLKVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPK 60 Query: 60 KNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 +G + +E+R+ + V ++ LT + +E D++LG E+G D+YI+KPF+P+ L R ++ Sbjct: 61 MDGWQVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVR 120 Query: 120 RTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYKLPRSEFRAMLHFCENPGKI 179 R+ + E+ + G +D + + D +L EF + +F N G Sbjct: 121 RS--------IQTLDETMEIGGIVIDKAAHE-VKIDDLAIELSVKEFELLTYFITNRGVA 171 Query: 180 QSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRFC 233 SR ++L + + RT+D ++++R D I TI G GY+F Sbjct: 172 LSREKILNNVWNYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGYKFE 222 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.214 0.845 Lambda K H 0.267 0.0655 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,452,971,952 Number of Sequences: 3077464 Number of extensions: 172158779 Number of successful extensions: 487484 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34085 Number of HSP's successfully gapped in prelim test: 16075 Number of HSP's that attempted gapping in prelim test: 378577 Number of HSP's gapped (non-prelim): 58351 length of query: 238 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 113 effective length of database: 655,713,356 effective search space: 74095609228 effective search space used: 74095609228 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 93 (39.8 bits)