Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	T	P	H	I	L	I	V	E	D	E	L	V	T	R	N	T	L	K	S	I	F	E	A	E	G	Y	D	V	F	E	A	T	D	G	A	E	M	H	Q	I	L	S	E	Y	D	I	N	L	V	I	M	D	I	N	L	P	G	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	L	L	L	A	R	E	L	R	E	Q	A	N	V	A	L	M	F	L	T	G	R	D	N	E	V	D	K	I	L	G	L	E	I	G	A	D	D	Y	I	T	K	P	F	N	P	R	E	L	T	I	R	A	R	N	L	L	S	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	M	N	L	G	T	V	S	E	E	R	R	S	V	E	S	Y	K	F	N	G	W	E	L	D	I	N	S	R	S	L	I	G	P	D	G	E	Q	Y	K	L	P	R	S	E	F	R	A	M	L	H	F	C	E	N	P	G	K	I	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence		S	R	A	E	L	L	K	K	M	T	G	R	E	L	K	P	H	D	R	T	V	D	V	T	I	R	R	I	R	K	H	F	E	S	T	P	D	T	P	E	I	I	A	T	I	H	G	E	G	Y	R	F	C	G	D	L	E	D
Secondary structure
SS confidence
Disorder																																		?	?		?	?																	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ys7 chain B Region: 3 - 235 Aligned: 225 Modelled: 227 Confidence: 100.0% Identity: 29% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ Phyre2 PDB 2oqr chain A Region: 4 - 232 Aligned: 224 Modelled: 229 Confidence: 100.0% Identity: 31% PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis Phyre2 PDB 2gwr chain A Region: 2 - 235 Aligned: 223 Modelled: 233 Confidence: 100.0% Identity: 31% PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis Phyre2 PDB 3r0j chain A Region: 3 - 235 Aligned: 219 Modelled: 233 Confidence: 100.0% Identity: 27% PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Phyre2 PDB 2hqr chain A Region: 4 - 235 Aligned: 216 Modelled: 232 Confidence: 100.0% Identity: 19% PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism Phyre2 PDB 1p2f chain A Region: 5 - 234 Aligned: 213 Modelled: 230 Confidence: 100.0% Identity: 32% PDB header:transcription Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog Phyre2 PDB 1kgs chain A Region: 3 - 235 Aligned: 218 Modelled: 233 Confidence: 100.0% Identity: 24% PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Phyre2 PDB 3q9s chain A Region: 3 - 225 Aligned: 210 Modelled: 211 Confidence: 100.0% Identity: 26% PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans Phyre2 PDB 1zn2 chain A Region: 2 - 213 Aligned: 183 Modelled: 192 Confidence: 99.9% Identity: 16% PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr Phyre2 PDB 2ayx chain A Region: 2 - 127 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain Phyre2 PDB 1w25 chain B Region: 3 - 122 Aligned: 120 Modelled: 120 Confidence: 99.9% Identity: 29% PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp Phyre2 PDB 3bre chain A Region: 3 - 122 Aligned: 120 Modelled: 120 Confidence: 99.9% Identity: 20% PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 Phyre2 PDB 3eq2 chain A Region: 3 - 123 Aligned: 118 Modelled: 121 Confidence: 99.9% Identity: 26% PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb Phyre2 PDB 2qzj chain C Region: 3 - 123 Aligned: 121 Modelled: 121 Confidence: 99.9% Identity: 22% PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile Phyre2 PDB 2a9p chain A domain 1 Region: 5 - 120 Aligned: 116 Modelled: 116 Confidence: 99.9% Identity: 41% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3i5a chain A Region: 3 - 123 Aligned: 121 Modelled: 121 Confidence: 99.9% Identity: 22% PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae Phyre2 PDB 1krw chain A Region: 1 - 123 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 22% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1mvo chain A Region: 1 - 120 Aligned: 119 Modelled: 120 Confidence: 99.9% Identity: 40% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1s8n chain A Region: 1 - 123 Aligned: 122 Modelled: 122 Confidence: 99.9% Identity: 29% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1ys7 chain A domain 2 Region: 3 - 122 Aligned: 120 Modelled: 120 Confidence: 99.9% Identity: 34% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 1 c1ys7B_ 2 c2oqrA_ 3 c2gwrA_ 4 c3r0jA_ 5 c2hqrA_ 6 c1p2fA_ 7 c1kgsA_ 8 c3q9sA_ 9 c1zn2A_ 10 c2ayxA_ 11 c1w25B_ 12 c3breA_ 13 c3eq2A_ 14 c2qzjC_ 15 d2a9pa1 16 c3i5aA_ 17 d1krwa_ 18 d1mvoa_ 19 d1s8na_ 20 d1ys7a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1ys7B_ 100.0 29 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 2 c2oqrA_ 100.0 31 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 3 c2gwrA_ 100.0 31 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 4 c3r0jA_ 100.0 27 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 5 c2hqrA_ 100.0 19 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 6 c1p2fA_ 100.0 32 PDB header:transcription Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog 7 c1kgsA_ 100.0 24 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 8 c3q9sA_ 100.0 26 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans 9 c1zn2A_ 99.9 16 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 10 c2ayxA_ 99.9 24 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 11 c1w25B_ 99.9 29 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 12 c3breA_ 99.9 20 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 13 c3eq2A_ 99.9 26 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 14 c2qzjC_ 99.9 22 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 15 d2a9pa1 99.9 41 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 16 c3i5aA_ 99.9 22 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 17 d1krwa_ 99.9 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 18 d1mvoa_ 99.9 40 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 19 d1s8na_ 99.9 29 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 20 d1ys7a2 99.9 34 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 21 c2zwmA_ not modelled 99.9 42 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 22 d1xhfa1 not modelled 99.9 97 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 23 c3nhzA_ not modelled 99.9 40 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 24 c3cfyA_ not modelled 99.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 25 d1dbwa_ not modelled 99.9 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 26 d1w25a1 not modelled 99.9 27 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 27 d1zh2a1 not modelled 99.9 38 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 28 d2ayxa1 not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 29 d1zgza1 not modelled 99.9 49 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 30 c1a2oB_ not modelled 99.9 17 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 31 c2rjnA_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 32 d2pl1a1 not modelled 99.9 36 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 33 d1qkka_ not modelled 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 34 c1ny5A_ not modelled 99.9 27 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 35 c3c3wB_ not modelled 99.9 19 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 36 c2qr3A_ not modelled 99.9 19 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 37 c3dzdA_ not modelled 99.9 20 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 38 d1yioa2 not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 39 d1ny5a1 not modelled 99.9 27 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 40 d1jbea_ not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 41 c3rqiA_ not modelled 99.9 17 PDB header:transcription Chain: A: PDB Molecule:response regulator protein; PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate 42 c3gt7A_ not modelled 99.9 34 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 43 d1kgsa2 not modelled 99.9 32 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 44 c2jrlA_ not modelled 99.9 20 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 45 c3hv2B_ not modelled 99.9 24 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 46 d1p6qa_ not modelled 99.9 25 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 47 d1peya_ not modelled 99.9 27 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 48 d1zesa1 not modelled 99.9 38 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 49 c3t6kB_ not modelled 99.9 34 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 50 c2zayA_ not modelled 99.9 25 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 51 c3jteA_ not modelled 99.9 29 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 52 c3crnA_ not modelled 99.9 30 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 53 c3lteH_ not modelled 99.9 25 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 54 c3cg4A_ not modelled 99.9 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 55 d1k66a_ not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 56 c3hdgE_ not modelled 99.9 23 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 57 d1heya_ not modelled 99.9 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 58 c3cg0A_ not modelled 99.9 23 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 59 c1rnlA_ not modelled 99.9 24 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 60 d1dz3a_ not modelled 99.9 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 c3b2nA_ not modelled 99.9 22 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 62 c3cu5B_ not modelled 99.9 22 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 63 c3c3mA_ not modelled 99.9 22 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 64 c3cz5B_ not modelled 99.9 26 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 65 d1u0sy_ not modelled 99.9 31 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 66 d1a2oa1 not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 67 c3khtA_ not modelled 99.9 18 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 68 c3t8yA_ not modelled 99.9 25 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 69 c3eulB_ not modelled 99.8 18 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 70 c2qxyB_ not modelled 99.8 30 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 71 c2jk1A_ not modelled 99.8 28 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 72 c3cnbC_ not modelled 99.8 21 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 73 c3h1gA_ not modelled 99.8 31 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 74 d1mb3a_ not modelled 99.8 30 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 75 c3kcnA_ not modelled 99.8 20 PDB header:lyase Chain: A: PDB Molecule:adenylate cyclase homolog; PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica 76 c3hdvB_ not modelled 99.8 25 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 77 d2r25b1 not modelled 99.8 25 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 d1a04a2 not modelled 99.8 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 79 c3grcD_ not modelled 99.8 21 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 80 d1opca_ not modelled 99.8 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 81 c3f6cB_ not modelled 99.8 14 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 82 c3gl9B_ not modelled 99.8 30 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 83 c2qv0A_ not modelled 99.8 24 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 84 c3nhmA_ not modelled 99.8 29 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 85 c3hebB_ not modelled 99.8 25 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum 86 c3a0rB_ not modelled 99.8 33 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 87 d1i3ca_ not modelled 99.8 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 88 d1p2fa2 not modelled 99.8 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 89 c3h5iA_ not modelled 99.8 25 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 90 c2hqoA_ not modelled 99.8 20 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 91 c3eodA_ not modelled 99.8 32 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 92 c2zxjB_ not modelled 99.8 31 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein walr; PDBTitle: crystal structure of yycf dna-binding domain from staphylococcus2 aureus 93 c2hwvA_ not modelled 99.8 28 PDB header:transcription Chain: A: PDB Molecule:dna-binding response regulator vicr; PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily. 94 d1gxqa_ not modelled 99.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 95 c3snkA_ not modelled 99.8 16 PDB header:signaling protein Chain: A: PDB Molecule:response regulator chey-like protein; PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution 96 c3i42A_ not modelled 99.8 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 97 c2jzyA_ not modelled 99.8 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein pcor; PDBTitle: solution structure of c-terminal effector domain of2 putative two-component-system response regulator involved3 in copper resistance from klebsiella pneumoniae 98 d1w25a2 not modelled 99.8 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 99 c2qvgA_ not modelled 99.8 23 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 100 c2hqnA_ not modelled 99.8 20 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 101 c3n0rA_ not modelled 99.8 25 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution 102 c3q9vB_ not modelled 99.8 24 PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra c-terminal domain(123-221) from deinococcus2 radiodurans 103 c3hzhA_ not modelled 99.8 24 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 104 c3mmnA_ not modelled 99.8 20 PDB header:transferase Chain: A: PDB Molecule:histidine kinase homolog; PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+ 105 c3luaA_ not modelled 99.8 29 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 106 c3eqzB_ not modelled 99.8 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 107 c2k4jA_ not modelled 99.8 19 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: arsr dna binding domain 108 c2j48A_ not modelled 99.8 25 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 109 d1p2fa1 not modelled 99.8 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:PhoB-like 110 c2nt3A_ not modelled 99.8 28 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 111 c3m6mF_ not modelled 99.8 22 PDB header:lyase/transferase Chain: F: PDB Molecule:sensory/regulatory protein rpfc; PDBTitle: crystal structure of rpff complexed with rec domain of rpfc 112 d1k68a_ not modelled 99.8 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 113 c3c97A_ not modelled 99.8 25 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 114 c2pmuD_ not modelled 99.8 16 PDB header:transcription regulation Chain: D: PDB Molecule:response regulator phop; PDBTitle: crystal structure of the dna-binding domain of phop 115 c2rdmB_ not modelled 99.8 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 116 d1dcfa_ not modelled 99.8 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 117 d2b4aa1 not modelled 99.8 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 118 c3ilhA_ not modelled 99.8 21 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 119 c3ktoA_ not modelled 99.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 120 d1qo0d_ not modelled 99.8 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:Positive regulator of the amidase operon AmiR

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0