Phyre 2 alignment of P75783 with c2zkrt_

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Job Description | P75783
Confidence | 71.80% | Date | Thu Jan 5 12:14:05 GMT 2012
Rank | 13 | Aligned Residues | 38
% Identity | 16% | Template | c2zkrt_
PDB info | PDB header:ribosomal protein/rna | Chain: T: PDB Molecule:rna expansion segment es39 part iii; | PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
Resolution | 8.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 573 | . | . | . | . | . | . | 580 | . | . |  |  |  |  |  | . | . | . | . |  | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | 610
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | G | M | N | T | G | D | L | V | T | I | . | . | . | . | . | G | P | L | T | . | G | T | V | E | R | M | S | I | R | S | V | G | V | R | Q | . | . | . | . | . | . | . | D | T | G | A | Y | H | I | I | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | I | R | K | D | D | E | V | Q | V | V | R | G | H | Y | K | G | Q | Q | I | G | K | V | V | Q | V | Y | R | K | K | Y | V | I | Y | I | E | R | V | Q | R | E | K | A | N | G | T | T | V | H | V | G
Template Known Secondary structure |  | B |  |  | T | T |  |  |  |  |  |  | S | S | T | T | T | T |  |  | S |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  | T | T |  |  |  |  |  | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 48 | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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