18/01/2012 01:11:15 : INFO  : Run start: Wed Jan 18 01:11:13 GMT 2012
18/01/2012 01:11:24 : INFO  : Initialised job
18/01/2012 01:11:28 : INFO  : Renaming log file 'phyre2_20120118_011112.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/785c43833a7cfdad/phyre_20120118_011112.log'
18/01/2012 01:11:30 : INFO  : Initialised job:
Sequence
>batch____
MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQKKAAYGALADVLDNDT
SRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEVSRHYGEALSARFGQLYRN
ITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCALPLYRKMGQWARQKNRERSNW
LQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRTIAFQQSLFLNAFALIEFFKAVL
RLIFCPNVAELRPFTIQDESARYWSRRLSWLSSLIGYGLIVAVPIISNQVNVQIGALANV
IIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLAFFSLFIRAFALVWHWLASAYFIVLFF
FSLFDPGNSLKFMMGATVRSLAIIGIAAFVSGMFSRWLAKTITLSPHTQRNYPELQKRLN
GWLSAALKTARILTVCVAVMLLLSAWGLFDFWNWLQNGAGQKTVDILIRIALILFFSAVG
WTVLASLIENRLASDIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPL
LAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVR
QDTGAYHIIPWSSITTFANFVRGIGSVVANYDVDRHEDADKANQALKDAVAELMENEEIR
GLIIGEPNFAGIVGLSNTAFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTY
QVLPAPGATPAEPLPPGEPTL

18/01/2012 01:11:32 : INFO  : Checked sequence
18/01/2012 01:11:38 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 01:11:40 : INFO  : PSI-BLAST 3 iterations
18/01/2012 01:15:53 : INFO  : PSI-BLAST 5 iterations
18/01/2012 01:20:27 : INFO  : Finished PSI-BLAST
18/01/2012 01:20:33 : INFO  : Running Buildali to generate a3m file
18/01/2012 01:49:35 : INFO  : Converting to HMM
18/01/2012 01:49:53 : INFO  : Calibrating HMM
18/01/2012 01:50:25 : INFO  : Searching HMM database
18/01/2012 02:04:57 : INFO  : Finished buildali
18/01/2012 02:05:00 : INFO  : Predicting secondary structure
18/01/2012 02:05:16 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 02:05:19 : INFO  : Predicting Disordered regions
18/01/2012 02:05:26 : INFO  : Predicted Disorder (Disopred)
18/01/2012 02:05:29 : INFO  : Running memsat_svm check
18/01/2012 02:14:13 : INFO  : Running memsat_svm full
18/01/2012 02:21:14 : INFO  : Predicted Transmembrane (memsat_svm) ID '785c43833a7cfdad'
18/01/2012 02:21:17 : INFO  : Initialising fold library search
18/01/2012 02:21:23 : INFO  : Initialised search input
18/01/2012 02:21:26 : INFO  : Building Ensemble models
18/01/2012 02:21:32 : INFO  : Building hh.c2vv5D_.model.1.pdb
18/01/2012 02:21:58 : INFO  : Building c2vv5D_.1.pdb
18/01/2012 02:22:21 : INFO  : Building d2vv5a2.2.pdb
18/01/2012 02:22:47 : INFO  : Building d2vv5a1.3.pdb
18/01/2012 02:23:12 : INFO  : Building d2vv5a3.4.pdb
18/01/2012 02:23:35 : INFO  : Building c2e6zA_.5.pdb
18/01/2012 02:23:58 : INFO  : Building d1nz9a_.6.pdb
18/01/2012 02:24:21 : INFO  : Building c2vfyA_.7.pdb
18/01/2012 02:24:44 : INFO  : Building c2kvqG_.8.pdb
18/01/2012 02:25:11 : INFO  : Building c2jvvA_.9.pdb
18/01/2012 02:25:35 : INFO  : Building d1nppa2.10.pdb
18/01/2012 02:26:00 : INFO  : Building d2hqha1.11.pdb
18/01/2012 02:26:24 : INFO  : Building d2dfaa1.12.pdb
18/01/2012 02:26:48 : INFO  : Building c2zkrt_.13.pdb
18/01/2012 02:27:15 : INFO  : Building c3p8bB_.14.pdb
18/01/2012 02:27:41 : INFO  : Building d2cqaa1.15.pdb
18/01/2012 02:28:06 : INFO  : Building d1v6ta_.16.pdb
18/01/2012 02:28:29 : INFO  : Building d2cp6a1.17.pdb
18/01/2012 02:28:53 : INFO  : Building c1oy8A_.18.pdb
18/01/2012 02:29:18 : INFO  : Building c2d5wA_.19.pdb
18/01/2012 02:29:43 : INFO  : Building d1t9ha1.20.pdb
18/01/2012 02:30:37 : INFO  : Finished HH model building
18/01/2012 02:30:40 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 02:31:49 : INFO  : html domain output complete ID '785c43833a7cfdad'
18/01/2012 02:47:04 : INFO  : Run end  : Wed Jan 18 02:47:02 GMT 2012
