Phyre 2 alignment of P75783 with c2d5wA_

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Job Description | P75783
Confidence | 65.48% | Date | Thu Jan 5 12:14:05 GMT 2012
Rank | 19 | Aligned Residues | 68
% Identity | 15% | Template | c2d5wA_
PDB info | PDB header:peptide binding protein | Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; | PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
Resolution | 1.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 634 | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | R | H | E | D | A | D | K | A | N | Q | A | L | K | D | A | V | A | E | L | M | E | N | E | E | I | R | G | L | I | I | G | E | P | N | F | A | G | I | V | G | L | S | N | T | A | F | T | L | R | V | S | F | T | T | L | P | L | K | Q | W | T | V | R | F | A | L | D | S | Q | V | K | K | H | F | D | L | A | G | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | Y | E | F | D | L | K | K | A | E | A | L | L | A | E | M | G | . | . | . | . | . | . | . | . | . | . | . | . | W | R | K | G | P | D | G | I | L | Q | R | T | V | N | G | R | T | V | R | F | E | I | E | Y | V | T | T | A | G | N | V | . | . | V | R | E | R | T | Q | Q | F | F | A | E | D | L | K | K | I | G | I
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | T | T | S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  | B | T | T |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 369 | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . |  |  | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | .
|  | 714 | .
Predicted Secondary structure |  |  |
Query SS confidence |  |  |
Query Sequence |  | R | A
Query Conservation |  |  |
Alig confidence |  |  |
Template Conservation |  |  |
Template Sequence |  | A | V
Template Known Secondary structure |  |  |
Template Predicted Secondary structure |  |  |
Template SS confidence |  |  |
|  | 435 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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