Phyre 2 alignment of P75783 with c3p8bB_

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Job Description | P75783
Confidence | 69.88% | Date | Thu Jan 5 12:14:05 GMT 2012
Rank | 14 | Aligned Residues | 45
% Identity | 20% | Template | c3p8bB_
PDB info | PDB header:transferase/transcription | Chain: B: PDB Molecule:transcription antitermination protein nusg; | PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 574 | . | . | . | . | . | 580 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . |  |  | . | . | . | 600 | . | . | . | . | . | . |  |  |  | . | . | . | 610 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | N | T | G | D | L | V | T | I | . | . | . | . | . | G | P | L | T | G | T | V | E | R | M | S | I | R | S | . | . | V | G | V | R | Q | D | T | G | A | Y | . | . | . | H | I | I | P | W | S | S | I | T | T | F | A
Query Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | E | P | G | D | L | V | E | V | I | A | G | P | F | K | G | Q | K | A | K | V | V | K | I | D | E | S | K | D | E | V | V | V | Q | F | I | D | A | I | V | P | I | P | V | T | I | K | G | D | Y | V | R | L | I | S
Template Known Secondary structure |  |  |  | T | T |  |  |  |  |  |  | S | S | T | T | T | T |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  | S | S |  | S | S |  |  |  |  |  |  |  | G | G | G |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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