Phyre 2 Results for P75783

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P75783
Date | Thu Jan 5 12:14:05 GMT 2012
Unique Job ID | 785c43833a7cfdad

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2vv5D_
Top template information
PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
Confidence and coverage
Confidence: | 100.0% | Coverage: | 33%
246 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | W | I | L | F | I | L | F | C | L | L | G | A | P | A | H | A | V | S | I | P | G | V | T | T | T | T | T | T | D | S | T | T | E | P | A | P | E | P | D | I | E | Q | K | K | A | A | Y | G | A | L | A | D | V | L | D | N | D | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | S | R | K | E | L | I | D | Q | L | R | T | V | A | A | T | P | P | A | E | P | V | P | K | I | V | P | P | T | L | V | E | E | Q | T | V | L | Q | K | V | T | E | V | S | R | H | Y | G | E | A | L | S | A | R | F | G | Q | L | Y | R | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | I | T | G | S | P | H | K | P | F | N | P | Q | T | F | S | N | A | L | T | H | F | S | M | L | A | V | L | V | F | G | F | Y | W | L | I | R | L | C | A | L | P | L | Y | R | K | M | G | Q | W | A | R | Q | K | N | R | E | R | S | N | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | L | Q | L | P | A | M | I | I | G | A | F | I | I | D | L | L | L | L | A | L | T | L | F | V | G | Q | V | L | S | D | N | L | N | A | G | S | R | T | I | A | F | Q | Q | S | L | F | L | N | A | F | A | L | I | E | F | F | K | A | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | R | L | I | F | C | P | N | V | A | E | L | R | P | F | T | I | Q | D | E | S | A | R | Y | W | S | R | R | L | S | W | L | S | S | L | I | G | Y | G | L | I | V | A | V | P | I | I | S | N | Q | V | N | V | Q | I | G | A | L | A | N | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | I | I | M | L | C | M | T | V | W | A | L | Y | L | I | F | R | N | K | K | E | I | T | Q | H | L | L | N | F | A | E | H | S | L | A | F | F | S | L | F | I | R | A | F | A | L | V | W | H | W | L | A | S | A | Y | F | I | V | L | F | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | F | S | L | F | D | P | G | N | S | L | K | F | M | M | G | A | T | V | R | S | L | A | I | I | G | I | A | A | F | V | S | G | M | F | S | R | W | L | A | K | T | I | T | L | S | P | H | T | Q | R | N | Y | P | E | L | Q | K | R | L | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? | ? | ? |  | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | G | W | L | S | A | A | L | K | T | A | R | I | L | T | V | C | V | A | V | M | L | L | L | S | A | W | G | L | F | D | F | W | N | W | L | Q | N | G | A | G | Q | K | T | V | D | I | L | I | R | I | A | L | I | L | F | F | S | A | V | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | W | T | V | L | A | S | L | I | E | N | R | L | A | S | D | I | H | G | R | P | L | P | S | A | R | T | R | T | L | L | T | L | F | R | N | A | L | A | V | I | I | S | T | I | T | I | M | I | V | L | S | E | I | G | V | N | I | A | P | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | L | A | G | A | G | A | L | G | L | A | I | S | F | G | S | Q | T | L | V | K | D | I | I | T | G | V | F | I | Q | F | E | N | G | M | N | T | G | D | L | V | T | I | G | P | L | T | G | T | V | E | R | M | S | I | R | S | V | G | V | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | Q | D | T | G | A | Y | H | I | I | P | W | S | S | I | T | T | F | A | N | F | V | R | G | I | G | S | V | V | A | N | Y | D | V | D | R | H | E | D | A | D | K | A | N | Q | A | L | K | D | A | V | A | E | L | M | E | N | E | E | I | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720
Sequence |  | G | L | I | I | G | E | P | N | F | A | G | I | V | G | L | S | N | T | A | F | T | L | R | V | S | F | T | T | L | P | L | K | Q | W | T | V | R | F | A | L | D | S | Q | V | K | K | H | F | D | L | A | G | V | R | A | P | V | Q | T | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | .
Sequence |  | Q | V | L | P | A | P | G | A | T | P | A | E | P | L | P | P | G | E | P | T | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2vv5D_ |

### PDB 2vv5 chain D

Region: 466 - 725
Aligned: 246
Modelled: 260
Confidence: 100.0%
Identity: 20%
PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs

Phyre2
2 |
| d2vv5a2 |

### PDB 2vv5 chain A domain 2

Region: 622 - 726
Aligned: 99
Modelled: 105
Confidence: 99.4%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family: Mechanosensitive channel protein MscS (YggB), C-terminal domain

Phyre2
3 |
| d2vv5a1 |

### PDB 2vv5 chain A domain 1

Region: 558 - 621
Aligned: 64
Modelled: 64
Confidence: 99.0%
Identity: 28%
Fold: Sm-like fold
Superfamily: Sm-like ribonucleoproteins
Family: Mechanosensitive channel protein MscS (YggB), middle domain

Phyre2
4 |
| d2vv5a3 |

### PDB 2vv5 chain A domain 3

Region: 466 - 556
Aligned: 83
Modelled: 91
Confidence: 98.2%
Identity: 19%
Fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
Superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
Family: Mechanosensitive channel protein MscS (YggB), transmembrane region

Phyre2
5 |
| c2e6zA_ |

### PDB 2e6z chain A

Region: 571 - 614
Aligned: 44
Modelled: 44
Confidence: 78.1%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5

Phyre2
6 |
| d1nz9a_ |

### PDB 1nz9 chain A

Region: 573 - 593
Aligned: 21
Modelled: 21
Confidence: 77.8%
Identity: 33%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: N-utilization substance G protein NusG, C-terminal domain

Phyre2
7 |
| c2vfyA_ |

### PDB 2vfy chain A

Region: 626 - 722
Aligned: 90
Modelled: 97
Confidence: 77.5%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:akap18 delta;
PDBTitle: akap18 delta central domain

Phyre2
8 |
| c2kvqG_ |

### PDB 2kvq chain G

Region: 571 - 593
Aligned: 23
Modelled: 23
Confidence: 76.9%
Identity: 22%
PDB header:transcription
Chain: G: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of nuse:nusg-ctd complex

Phyre2
9 |
| c2jvvA_ |

### PDB 2jvv chain A

Region: 571 - 593
Aligned: 23
Modelled: 23
Confidence: 76.9%
Identity: 22%
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of e. coli nusg carboxyterminal domain

Phyre2
10 |
| d1nppa2 |

### PDB 1npp chain A domain 2

Region: 573 - 593
Aligned: 21
Modelled: 21
Confidence: 76.4%
Identity: 43%
Fold: SH3-like barrel
Superfamily: Translation proteins SH3-like domain
Family: N-utilization substance G protein NusG, C-terminal domain

Phyre2
11 |
| d2hqha1 |

### PDB 2hqh chain A domain 1

Region: 573 - 593
Aligned: 21
Modelled: 21
Confidence: 75.6%
Identity: 29%
Fold: SH3-like barrel
Superfamily: Cap-Gly domain
Family: Cap-Gly domain

Phyre2
12 |
| d2dfaa1 |

### PDB 2dfa chain A domain 1

Region: 637 - 717
Aligned: 60
Modelled: 64
Confidence: 75.2%
Identity: 23%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: LamB/YcsF-like

Phyre2
13 |
| c2zkrt_ |

### PDB 2zkr chain T

Region: 573 - 610
Aligned: 38
Modelled: 38
Confidence: 71.8%
Identity: 16%
PDB header:ribosomal protein/rna
Chain: T: PDB Molecule:rna expansion segment es39 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Phyre2
14 |
| c3p8bB_ |

### PDB 3p8b chain B

Region: 574 - 618
Aligned: 45
Modelled: 45
Confidence: 69.9%
Identity: 20%
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5

Phyre2
15 |
| d2cqaa1 |

### PDB 2cqa chain A domain 1

Region: 569 - 593
Aligned: 25
Modelled: 25
Confidence: 69.0%
Identity: 24%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: TIP49 domain

Phyre2
16 |
| d1v6ta_ |

### PDB 1v6t chain A

Region: 637 - 720
Aligned: 66
Modelled: 67
Confidence: 68.2%
Identity: 18%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: LamB/YcsF-like

Phyre2
17 |
| d2cp6a1 |

### PDB 2cp6 chain A domain 1

Region: 571 - 593
Aligned: 23
Modelled: 23
Confidence: 66.4%
Identity: 30%
Fold: SH3-like barrel
Superfamily: Cap-Gly domain
Family: Cap-Gly domain

Phyre2
18 |
| c1oy8A_ |

### PDB 1oy8 chain A

Region: 612 - 710
Aligned: 96
Modelled: 99
Confidence: 65.8%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump

Phyre2
19 |
| c2d5wA_ |

### PDB 2d5w chain A

Region: 634 - 715
Aligned: 68
Modelled: 82
Confidence: 65.5%
Identity: 15%
PDB header:peptide binding protein
Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein;
PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide

Phyre2
20 |
| d1t9ha1 |

### PDB 1t9h chain A domain 1

Region: 576 - 596
Aligned: 21
Modelled: 21
Confidence: 64.3%
Identity: 24%
Fold: OB-fold
Superfamily: Nucleic acid-binding proteins
Family: Cold shock DNA-binding domain-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2vv5D_ |
|  | 100.0 | 20 | PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs
2 | d2vv5a2 |
|  | 99.4 | 16 | Fold:Ferredoxin-like Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 | d2vv5a1 |
|  | 99.0 | 28 | Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain
4 | d2vv5a3 |
|  | 98.2 | 19 | Fold:Mechanosensitive channel protein MscS (YggB), transmembrane region Superfamily:Mechanosensitive channel protein MscS (YggB), transmembrane region Family:Mechanosensitive channel protein MscS (YggB), transmembrane region
5 | c2e6zA_ |
|  | 78.1 | 16 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5
6 | d1nz9a_ |
|  | 77.8 | 33 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain
7 | c2vfyA_ |
|  | 77.5 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain
8 | c2kvqG_ |
|  | 76.9 | 22 | PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex
9 | c2jvvA_ |
|  | 76.9 | 22 | PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain
10 | d1nppa2 |
|  | 76.4 | 43 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain
11 | d2hqha1 |
|  | 75.6 | 29 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
12 | d2dfaa1 |
|  | 75.2 | 23 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like
13 | c2zkrt_ |
|  | 71.8 | 16 | PDB header:ribosomal protein/rna Chain: T: PDB Molecule:rna expansion segment es39 part iii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
14 | c3p8bB_ |
|  | 69.9 | 20 | PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
15 | d2cqaa1 |
|  | 69.0 | 24 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain
16 | d1v6ta_ |
|  | 68.2 | 18 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like
17 | d2cp6a1 |
|  | 66.4 | 30 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
18 | c1oy8A_ |
|  | 65.8 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
19 | c2d5wA_ |
|  | 65.5 | 15 | PDB header:peptide binding protein Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein; PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
20 | d1t9ha1 |
|  | 64.3 | 24 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
21 | d1u0la1 |
| not modelled | 63.0 | 25 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
22 | c2x5cB_ |
| not modelled | 62.8 | 21 | PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus
23 | c3ftjA_ |
| not modelled | 60.3 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:macrolide export atp-binding/permease protein PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
24 | d1whka_ |
| not modelled | 59.7 | 17 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
25 | c3ry3B_ |
| not modelled | 58.1 | 20 | PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis.
26 | d1vqot1 |
| not modelled | 55.9 | 30 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e
27 | d1h6za2 |
| not modelled | 55.0 | 26 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain
28 | c3pamB_ |
| not modelled | 54.5 | 18 | PDB header:transport protein Chain: B: PDB Molecule:transmembrane protein; PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1
29 | c2rcnA_ |
| not modelled | 54.3 | 31 | PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium.
30 | c4a1cS_ |
| not modelled | 53.1 | 25 | PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
31 | d1vqoq1 |
| not modelled | 52.7 | 30 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e
32 | d2coya1 |
| not modelled | 51.6 | 23 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
33 | d1whma_ |
| not modelled | 51.5 | 18 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
34 | d2p13a1 |
| not modelled | 51.0 | 13 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
35 | d1whja_ |
| not modelled | 50.5 | 33 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
36 | c1t9hA_ |
| not modelled | 50.4 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase.
37 | d2do3a1 |
| not modelled | 50.2 | 19 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like
38 | d2e3ia1 |
| not modelled | 50.2 | 15 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
39 | d2cp5a1 |
| not modelled | 50.1 | 14 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
40 | d2cp2a1 |
| not modelled | 48.8 | 25 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
41 | c2e4hA_ |
| not modelled | 48.8 | 27 | PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail
42 | d2plsa1 |
| not modelled | 48.6 | 20 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
43 | c1m1gB_ |
| not modelled | 48.3 | 43 | PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
44 | c2z0wA_ |
| not modelled | 48.1 | 20 | PDB header:protein binding Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4; PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer
45 | d1khia1 |
| not modelled | 47.1 | 23 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
46 | d2o1ra1 |
| not modelled | 47.0 | 14 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
47 | d2coza1 |
| not modelled | 47.0 | 27 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
48 | d1bkba1 |
| not modelled | 46.9 | 21 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
49 | d2e3ha1 |
| not modelled | 46.9 | 30 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
50 | d1ppje2 |
| not modelled | 46.7 | 4 | Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor
51 | c3nkuA_ |
| not modelled | 45.9 | 28 | PDB header:protein transport Chain: A: PDB Molecule:drra; PDBTitle: crystal structure of the n-terminal domain of drra/sidm from2 legionella pneumophila
52 | c2omdB_ |
| not modelled | 45.7 | 13 | PDB header:lyase Chain: B: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: crystal structure of molybdopterin converting factor subunit 22 (aq_2181) from aquifex aeolicus vf5
53 | c2jxfA_ |
| not modelled | 45.1 | 18 | PDB header:viral protein, membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: the solution structure of hcv ns4b(40-69)
54 | c3iz5Y_ |
| not modelled | 45.1 | 19 | PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
55 | c3ftoA_ |
| not modelled | 45.1 | 16 | PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation
56 | d1dpea_ |
| not modelled | 44.9 | 25 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
57 | c2qieA_ |
| not modelled | 44.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z
58 | c2grvC_ |
| not modelled | 44.6 | 17 | PDB header:biosynthetic protein Chain: C: PDB Molecule:lpqw; PDBTitle: crystal structure of lpqw
59 | d1kbla2 |
| not modelled | 44.5 | 19 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain
60 | d1iuha_ |
| not modelled | 44.3 | 12 | Fold:LigT-like Superfamily:LigT-like Family:2'-5' RNA ligase LigT
61 | c3tpaA_ |
| not modelled | 44.2 | 14 | PDB header:heme binding protein Chain: A: PDB Molecule:heme-binding protein a; PDBTitle: structure of hbpa2 from haemophilus parasuis
62 | d1iz6a1 |
| not modelled | 43.4 | 17 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
63 | d1u7ka_ |
| not modelled | 43.2 | 20 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
64 | d1s04a_ |
| not modelled | 43.2 | 18 | Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain
65 | d2cowa1 |
| not modelled | 43.1 | 32 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
66 | c1u0lB_ |
| not modelled | 42.8 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima
67 | d1iwga1 |
| not modelled | 42.4 | 16 | Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
68 | d1xoca1 |
| not modelled | 42.3 | 20 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
69 | d2cp0a1 |
| not modelled | 42.0 | 31 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
70 | c2wctC_ |
| not modelled | 41.9 | 32 | PDB header:rna-binding protein Chain: C: PDB Molecule:non-structural protein 3; PDBTitle: human sars coronavirus unique domain (triclinic form)
71 | d1vbga2 |
| not modelled | 41.0 | 19 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:Pyruvate phosphate dikinase, central domain
72 | c3dedB_ |
| not modelled | 40.9 | 13 | PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
73 | d1vr5a1 |
| not modelled | 40.9 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
74 | c3lvuB_ |
| not modelled | 40.4 | 17 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
75 | c3iz5U_ |
| not modelled | 40.3 | 34 | PDB header:ribosome Chain: U: PDB Molecule:60s ribosomal protein l21 (l21e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
76 | c2o7jA_ |
| not modelled | 40.0 | 18 | PDB header:sugar binding protein Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose
77 | c4a1aP_ |
| not modelled | 39.6 | 41 | PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l21; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
78 | d2cp3a1 |
| not modelled | 39.6 | 35 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
79 | d2eyqa1 |
| not modelled | 39.6 | 16 | Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like
80 | d3deda1 |
| not modelled | 39.6 | 13 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
81 | d1whha_ |
| not modelled | 39.3 | 22 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
82 | d1xnea_ |
| not modelled | 39.2 | 15 | Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain
83 | c2e70A_ |
| not modelled | 39.2 | 20 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5
84 | c1ztyA_ |
| not modelled | 39.0 | 14 | PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein
85 | d2nqwa1 |
| not modelled | 39.0 | 19 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
86 | d1m9dc_ |
| not modelled | 38.9 | 21 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
87 | d2eifa1 |
| not modelled | 38.7 | 17 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
88 | d1v6ga2 |
| not modelled | 37.9 | 27 | Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain
89 | d1yvca1 |
| not modelled | 37.7 | 15 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain
90 | d1e32a3 |
| not modelled | 37.7 | 18 | Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like
91 | c3llbA_ |
| not modelled | 37.2 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
92 | d1m9fd_ |
| not modelled | 37.0 | 15 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
93 | c2yv5A_ |
| not modelled | 36.6 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus
94 | d1bbua1 |
| not modelled | 36.4 | 20 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Anticodon-binding domain
95 | d1zyma2 |
| not modelled | 35.8 | 13 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:Phosphohistidine domain Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
96 | d2pxrc1 |
| not modelled | 35.5 | 17 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
97 | d1bcce2 |
| not modelled | 34.4 | 9 | Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor
98 | c2ivwA_ |
| not modelled | 34.4 | 20 | PDB header:lipoprotein Chain: A: PDB Molecule:pilp pilot protein; PDBTitle: the solution structure of a domain from the neisseria2 meningitidis pilp pilot protein.
99 | c2fb0A_ |
| not modelled | 34.3 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution, possible3 oxidoreductase
100 | d1zlqa1 |
| not modelled | 34.2 | 20 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
101 | c2zkrq_ |
| not modelled | 33.8 | 31 | PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
102 | c3t66A_ |
| not modelled | 33.5 | 13 | PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
103 | d1x6oa1 |
| not modelled | 33.4 | 17 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
104 | d1vgya2 |
| not modelled | 33.3 | 17 | Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain
105 | d1q40b_ |
| not modelled | 33.2 | 26 | Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like
106 | d1g7sa1 |
| not modelled | 33.1 | 5 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
107 | d1c99a_ |
| not modelled | 32.8 | 39 | Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C
108 | c3c5oD_ |
| not modelled | 32.5 | 18 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:upf0311 protein rpa1785; PDBTitle: crystal structure of the conserved protein of unknown function rpa17852 from rhodopseudomonas palustris
109 | c1l6nA_ |
| not modelled | 32.4 | 18 | PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
110 | d2plia1 |
| not modelled | 32.4 | 39 | Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like
111 | c2l66B_ |
| not modelled | 31.8 | 32 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
112 | d1yeza1 |
| not modelled | 31.8 | 10 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TRAM domain
113 | c2lc4A_ |
| not modelled | 31.8 | 28 | PDB header:structural protein Chain: A: PDB Molecule:pilp protein; PDBTitle: solution structure of pilp from pseudomonas aeruginosa
114 | c1s1iQ_ |
| not modelled | 31.4 | 31 | PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l21-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
115 | d2hi6a1 |
| not modelled | 31.2 | 41 | Fold:The "swivelling" beta/beta/alpha domain Superfamily:LeuD/IlvD-like Family:AF0055-like
116 | d1ixda_ |
| not modelled | 31.2 | 17 | Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain
117 | d2if6a1 |
| not modelled | 31.0 | 21 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like
118 | d3d3ra1 |
| not modelled | 30.8 | 25 | Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like
119 | d2a7ya1 |
| not modelled | 30.0 | 19 | Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like
120 | c2a7yA_ |
| not modelled | 30.0 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0