Phyre 2 alignment of P0AF76 with c1wyyB_

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Job Description | P0AF76
Confidence | 6.75% | Date | Thu Jan 5 11:25:29 GMT 2012
Rank | 34 | Aligned Residues | 21
% Identity | 43% | Template | c1wyyB_
PDB info | PDB header:viral protein | Chain: B: PDB Molecule:e2 glycoprotein; | PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | G | A | L | S | L | K | S | S | L | E | D | I | L | L | E | I | T | S | L | V | D | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | G | A | I | S | . | . | S | V | L | N | D | I | L | S | R | L | D | K | V | E | A | E
Template Known Secondary structure |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 952 | . | . | . | . |  |  | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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