Phyre 2 alignment of P0AF76 with c2ieqC_

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Job Description | P0AF76
Confidence | 22.06% | Date | Thu Jan 5 11:25:29 GMT 2012
Rank | 9 | Aligned Residues | 25
% Identity | 28% | Template | c2ieqC_
PDB info | PDB header:viral protein | Chain: C: PDB Molecule:spike glycoprotein; | PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
Resolution | 1.75 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | F | G | A | L | S | L | K | S | S | L | E | D | I | L | L | E | I | T | S | L | V | D | N | A | L | D | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | L | N | L | S | . | . | S | E | L | K | Q | L | E | A | K | T | A | S | L | F | Q | T | T | V | E | L
Template Known Secondary structure |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 71 | . | . | . | . |  |  | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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