15/01/2012 17:59:44 : INFO  : Run start: Sun Jan 15 17:59:44 GMT 2012
15/01/2012 17:59:46 : INFO  : Initialised job
15/01/2012 17:59:47 : INFO  : Renaming log file 'phyre2_20120115_175944.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/phyre_20120115_175944.log'
15/01/2012 17:59:47 : INFO  : Initialised job:
Sequence
>batch____
MITIPITLRMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFF
NALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKN
YYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWESAGTLS
FTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQ
AELIALSNAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQ
FISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQRPTNKP
KNCQHAVQVADASIRTPDNKIILENLNFHVSPGKWLLLKGYSGAGKTTLLKTLSHCWPWF
KGDISSPADSWYVSQTPLIKTGLLKEIICKALPLPVDDKSLSEVLHQVGLGKLAARIHDH
DRWGDILSSGEKQRIALARLILRRPKWIFLDETTSHLEEQEAIRLLRLVREKLPTSGVIM
VTHQPGVWNLADDICDISAVL

15/01/2012 17:59:48 : INFO  : Checked sequence
15/01/2012 17:59:48 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 17:59:50 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:03:28 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:09:27 : INFO  : Finished PSI-BLAST
15/01/2012 18:09:28 : INFO  : Running Buildali to generate a3m file
15/01/2012 20:34:45 : INFO  : Converting to HMM
15/01/2012 20:35:59 : INFO  : Calibrating HMM
15/01/2012 20:36:23 : INFO  : Searching HMM database
15/01/2012 20:50:03 : INFO  : Finished buildali
15/01/2012 20:50:04 : INFO  : Predicting secondary structure
15/01/2012 20:50:12 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 20:50:14 : INFO  : Predicting Disordered regions
15/01/2012 20:50:18 : INFO  : Predicted Disorder (Disopred)
15/01/2012 20:50:19 : INFO  : Running memsat_svm check
15/01/2012 20:53:46 : INFO  : Running memsat_svm full
15/01/2012 21:03:27 : INFO  : Predicted Transmembrane (memsat_svm) ID '7797db634451712f'
15/01/2012 21:03:29 : INFO  : Initialising fold library search
15/01/2012 21:03:32 : INFO  : Initialised search input
15/01/2012 21:03:34 : INFO  : Building Ensemble models
15/01/2012 21:03:39 : INFO  : Building hh.c2yl4A_.model.1.pdb
15/01/2012 21:03:55 : INFO  : Building hh.c2hydB_.model.2.pdb
15/01/2012 21:04:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/hh.c2hydB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/c2hydB_.2.pdb
15/01/2012 21:04:13 : INFO  : Building hh.c3g5uB_.model.3.pdb
15/01/2012 21:04:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/hh.c3g5uB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/c3g5uB_.3.pdb
15/01/2012 21:04:31 : INFO  : Building hh.c3b5wE_.model.4.pdb
15/01/2012 21:04:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/hh.c3b5wE_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/c3b5wE_.4.pdb
15/01/2012 21:04:54 : INFO  : Building hh.c3b5xB_.model.5.pdb
15/01/2012 21:05:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/hh.c3b5xB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7797db634451712f/c3b5xB_.5.pdb
15/01/2012 21:05:16 : INFO  : Building c2yl4A_.1.pdb
15/01/2012 21:05:31 : INFO  : Building c2hydB_.2.pdb
15/01/2012 21:05:43 : INFO  : Building c3g5uB_.3.pdb
15/01/2012 21:05:57 : INFO  : Building c3b5wE_.4.pdb
15/01/2012 21:06:17 : INFO  : Building c3b5xB_.5.pdb
15/01/2012 21:06:34 : INFO  : Building c3nhaA_.6.pdb
15/01/2012 21:06:47 : INFO  : Building c2iw3B_.7.pdb
15/01/2012 21:07:02 : INFO  : Building d3b60a1.8.pdb
15/01/2012 21:07:18 : INFO  : Building d2pmka1.9.pdb
15/01/2012 21:07:34 : INFO  : Building d1mv5a_.10.pdb
15/01/2012 21:07:49 : INFO  : Building c2cbzA_.11.pdb
15/01/2012 21:08:04 : INFO  : Building d1jj7a_.12.pdb
15/01/2012 21:08:19 : INFO  : Building d2hyda1.13.pdb
15/01/2012 21:08:34 : INFO  : Building c2pzfB_.14.pdb
15/01/2012 21:08:49 : INFO  : Building c1z47B_.15.pdb
15/01/2012 21:09:03 : INFO  : Building c2nq2C_.16.pdb
15/01/2012 21:09:18 : INFO  : Building c3fvqB_.17.pdb
15/01/2012 21:09:33 : INFO  : Building c2olkD_.18.pdb
15/01/2012 21:09:45 : INFO  : Building c2yyzA_.19.pdb
15/01/2012 21:09:58 : INFO  : Building c3dhwC_.20.pdb
15/01/2012 21:11:56 : INFO  : Finished HH model building
15/01/2012 21:11:58 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 21:13:20 : INFO  : html domain output complete ID '7797db634451712f'
15/01/2012 23:18:59 : INFO  : Run end  : Sun Jan 15 23:18:58 GMT 2012
