10/01/2012 01:20:18 : INFO  : Run start: Tue Jan 10 01:20:18 GMT 2012
10/01/2012 01:20:20 : INFO  : Initialised job
10/01/2012 01:20:21 : INFO  : Renaming log file 'phyre2_20120110_012018.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/7782c8e281d4d58c/phyre_20120110_012018.log'
10/01/2012 01:20:22 : INFO  : Initialised job:
Sequence
>batch____
MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGN
IPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFA
AAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFN
TRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN
SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSY
LPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQATLTSNDRQNSLNNIAATGGENGKVF
ALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQ
GRTSIAHKGMLLAAKTMAATTVNLFLDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSPL
K

10/01/2012 01:20:22 : INFO  : Checked sequence
10/01/2012 01:20:24 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 01:20:24 : INFO  : PSI-BLAST 3 iterations
10/01/2012 01:23:06 : INFO  : PSI-BLAST 5 iterations
10/01/2012 01:26:22 : INFO  : Finished PSI-BLAST
10/01/2012 01:26:23 : INFO  : Running Buildali to generate a3m file
10/01/2012 01:40:23 : INFO  : Converting to HMM
10/01/2012 01:40:30 : INFO  : Calibrating HMM
10/01/2012 01:40:48 : INFO  : Searching HMM database
10/01/2012 01:52:20 : INFO  : Finished buildali
10/01/2012 01:52:21 : INFO  : Predicting secondary structure
10/01/2012 01:52:24 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 01:52:25 : INFO  : Predicting Disordered regions
10/01/2012 01:52:26 : INFO  : Predicted Disorder (Disopred)
10/01/2012 01:52:27 : INFO  : Running memsat_svm check
10/01/2012 01:55:20 : INFO  : Running memsat_svm full
10/01/2012 02:03:16 : INFO  : Predicted Transmembrane (memsat_svm) ID '7782c8e281d4d58c'
10/01/2012 02:03:17 : INFO  : Initialising fold library search
10/01/2012 02:03:18 : INFO  : Initialised search input
10/01/2012 02:03:19 : INFO  : Building Ensemble models
10/01/2012 02:03:21 : INFO  : Building hh.c3ramC_.model.1.pdb
10/01/2012 02:03:28 : INFO  : Building c3ramC_.1.pdb
10/01/2012 02:03:33 : INFO  : Building c3io1B_.2.pdb
10/01/2012 02:03:39 : INFO  : Building c1ysjB_.3.pdb
10/01/2012 02:03:44 : INFO  : Building c2q43A_.4.pdb
10/01/2012 02:03:49 : INFO  : Building c3pfoB_.5.pdb
10/01/2012 02:03:55 : INFO  : Building d1xmba1.6.pdb
10/01/2012 02:04:02 : INFO  : Building d1ysja1.7.pdb
10/01/2012 02:04:11 : INFO  : Building c1cg2D_.8.pdb
10/01/2012 02:04:19 : INFO  : Building c3ic1A_.9.pdb
10/01/2012 02:04:27 : INFO  : Building c3gb0A_.10.pdb
10/01/2012 02:04:36 : INFO  : Building c2rb7A_.11.pdb
10/01/2012 02:04:45 : INFO  : Building c1vgyB_.12.pdb
10/01/2012 02:04:52 : INFO  : Building c3dljB_.13.pdb
10/01/2012 02:04:58 : INFO  : Building c2zogA_.14.pdb
10/01/2012 02:05:05 : INFO  : Building c2v8gD_.15.pdb
10/01/2012 02:05:12 : INFO  : Building c3rzaA_.16.pdb
10/01/2012 02:05:18 : INFO  : Building c2imoA_.17.pdb
10/01/2012 02:05:25 : INFO  : Building c3n5fB_.18.pdb
10/01/2012 02:05:32 : INFO  : Building c2pokB_.19.pdb
10/01/2012 02:05:38 : INFO  : Building c3tx8A_.20.pdb
10/01/2012 02:05:55 : INFO  : Finished HH model building
10/01/2012 02:05:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 02:06:43 : INFO  : html domain output complete ID '7782c8e281d4d58c'
10/01/2012 05:38:52 : INFO  : Run end  : Tue Jan 10 05:38:51 GMT 2012
