BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (114 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...   230   1e-59
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...    89   5e-17
UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...    84   2e-15
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...    71   9e-12
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...    44   0.001
UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding...    43   0.003
UniRef50_UPI0000383339 COG4220: Phage DNA packaging protein, Nu1...    38   0.078

>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114
           QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK
Sbjct: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 69/120 (57%), Gaps = 11/120 (9%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRN--AER- 57
           MTP ELA   G +RQTIN+WVR++ W T   PGV+GG+ARLV +++ VRE++ N  A R 
Sbjct: 8   MTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRH 67

Query: 58  -------PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                   E  G       DA    +  TL + MTP EQ Q   LL REGI G L RLGI
Sbjct: 68  LLTDNHLAESPGAYLVNEADAIWRQITETL-QLMTPAEQLQLRDLLAREGISGFLARLGI 126


>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67

Query: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                E  E   E  A    AP    ++     MT +EQ++    L REGI   L RL I
Sbjct: 68  TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126

Query: 111 RDS 113
            +S
Sbjct: 127 DES 129


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 10/123 (8%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MT  EL  L+GY+ Q I++W RK GW   P  G +GG A L+ + +QV +Y    ++   
Sbjct: 8   MTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFLATDKLRY 66

Query: 61  QGE---------APALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
                       AP ++ D  +    +   + ++P EQ + + L+  EG  GL++RLG+R
Sbjct: 67  SAHLYNRIEETPAPYVTWDNEMMAQFIRTLEMLSPQEQARLSELISEEGAAGLVKRLGLR 126

Query: 112 DSK 114
           D K
Sbjct: 127 DEK 129


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 13  SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAP 72
           S Q IN+  R++GW    + GVQG KA   H++   +  ++   R +   E  +L+   P
Sbjct: 20  STQGINQMARRQGWKHRRRLGVQG-KALEYHIDSLPKPILKQL-RLKEDAEKYSLNQQDP 77

Query: 73  LEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
              + +   +++T  E+++  + L REGI GL++RL 
Sbjct: 78  F-TIWIEAYRQLTDSEREKLIAFLFREGIQGLIKRLS 113


>UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2
           Tax=Edwardsiella RepID=C5B7F4_EDWI9
          Length = 114

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVN----EQVREYIRNA 55
           +  ELA + G+  + Q IN+  + EGW    + GVQG KA   H++    E V E +   
Sbjct: 7   SAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG-KAVEYHISCFPPEVVDELLARD 65

Query: 56  ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
           E+ +       +S + P E +  ++  +M+  E+K+ TSL+LR GI   L+RLG
Sbjct: 66  EQAQ-----YLISSNQP-EKVWYSILLQMSEEERKKVTSLILRIGINEFLRRLG 113


>UniRef50_UPI0000383339 COG4220: Phage DNA packaging protein, Nu1 subunit of terminase
          n=1 Tax=Magnetospirillum magnetotacticum MS-1
          RepID=UPI0000383339
          Length = 110

 Score = 38.1 bits (87), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 5  ELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEA 64
          ELA LTGY R TI+ WV++ G      P V+GG A  +     VR ++   + PE Q +A
Sbjct: 31 ELAALTGYHRDTISDWVKRWG-----LPVVRGG-AHGIEYQIDVRAFV---DWPEAQAKA 81

Query: 65 PAL 67
           AL
Sbjct: 82 EAL 84


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...   156   3e-37
UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...   142   2e-33
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...   135   3e-31
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...   131   9e-30
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...   107   2e-22

Sequences not found previously or not previously below threshold:

UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding...    71   2e-11
UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati...    65   7e-10
UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding...    63   2e-09
UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding...    63   3e-09
UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding...    61   1e-08
UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis...    59   5e-08
UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Provide...    56   4e-07
UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin...    54   1e-06
UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding...    52   4e-06
UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=...    46   3e-04
UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersin...    44   0.002

>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score =  156 bits (393), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114
           QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK
Sbjct: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114


>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score =  142 bits (359), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67

Query: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                E  E   E  A    AP    ++     MT +EQ++    L REGI   L RL I
Sbjct: 68  TPMLMEAEERIAEY-APGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDI 126

Query: 111 RDS 113
            +S
Sbjct: 127 DES 129


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score =  135 bits (340), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 10/123 (8%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MT  EL  L+GY+ Q I++W RK GW   P  G +GG A L+ + +QV +Y    ++   
Sbjct: 8   MTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFLATDKLRY 66

Query: 61  QGE---------APALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
                       AP ++ D  +    +   + ++P EQ + + L+  EG  GL++RLG+R
Sbjct: 67  SAHLYNRIEETPAPYVTWDNEMMAQFIRTLEMLSPQEQARLSELISEEGAAGLVKRLGLR 126

Query: 112 DSK 114
           D K
Sbjct: 127 DEK 129


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score =  131 bits (328), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/120 (45%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER--- 57
           MTP ELA   G +RQTIN+WVR++ W T   PGV+GG+ARLV +++ VRE++ N      
Sbjct: 8   MTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRH 67

Query: 58  -------PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                   E  G       DA    +  TL + MTP EQ Q   LL REGI G L RLGI
Sbjct: 68  LLTDNHLAESPGAYLVNEADAIWRQITETL-QLMTPAEQLQLRDLLAREGISGFLARLGI 126


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score =  107 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 13  SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAP 72
           S Q IN+  R++GW    + GVQG KA   H++   +  ++   R +   E  +L+   P
Sbjct: 20  STQGINQMARRQGWKHRRRLGVQG-KALEYHIDSLPKPILKQL-RLKEDAEKYSLNQQDP 77

Query: 73  LEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
              + +   +++T  E+++  + L REGI GL++RL 
Sbjct: 78  F-TIWIEAYRQLTDSEREKLIAFLFREGIQGLIKRLS 113


>UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31
           Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY
          Length = 115

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 3   PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
             ELA L G   S Q IN   ++EGW    + GVQG KA   H+       + + +  E 
Sbjct: 8   AKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG-KAVEYHIGSLPITILNSLQLREE 66

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
             +  A +   PL  L V      T  E++Q  S + REG   L++RL + 
Sbjct: 67  PAQY-ATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSLIERLEMD 115


>UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans
           568 RepID=A8G8Y9_SERP5
          Length = 90

 Score = 65.2 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 20  WVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVT 79
             R+EGW +  + GVQG KA   H++       RN    + +  +  +    PL V+ + 
Sbjct: 1   MARREGWNSRRRKGVQG-KALEYHIDSLPAG-TRNLLVLKEEPASYQVERKDPL-VVWIE 57

Query: 80  LAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
               +T  E+++  + L+REGI  LL R+   
Sbjct: 58  YYYHLTECEREKVLAFLIREGIGSLLARISAD 89


>UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3
           Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5
          Length = 116

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 3   PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
             EL  + G   S Q IN   R+EGW +  + GVQG KA   H+N       R+    + 
Sbjct: 8   ARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG-KAVEYHINSLPIG-ARSLLVLQE 65

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRD 112
                 L    PL  + V     ++  E+++  + L+REGI  LL  +   +
Sbjct: 66  DPAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSLLALIAAEE 116


>UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2
           Tax=Edwardsiella RepID=C5B7F4_EDWI9
          Length = 114

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           +  ELA + G+  + Q IN+  + EGW    + GVQG KA   H++    E +      +
Sbjct: 7   SAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG-KAVEYHISCFPPEVVDELLARD 65

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
            Q +    S       +  ++  +M+  E+K+ TSL+LR GI   L+RLG
Sbjct: 66  EQAQYLISSNQPE--KVWYSILLQMSEEERKKVTSLILRIGINEFLRRLG 113


>UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9
           Tax=Enterobacteriaceae RepID=C6CJR2_DICZE
          Length = 136

 Score = 60.9 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T +EL  + G   SRQ +NK  +  GW    + GVQG K     +     E      R  
Sbjct: 13  TTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQG-KGVEYAIWSLPEEVKTTLMRET 71

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
              +   ++     E   + +  +++  E+ +    +LREG +G+L RL
Sbjct: 72  SP-DYAVVTPTNVQESTWIQIYHQLSVEERTRLIGHILREGAMGMLARL 119


>UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NW40_SODGM
          Length = 127

 Score = 59.0 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 13  SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAP 72
           +RQ +N+  R+EGW    + G +G KA     +    + ++             LS    
Sbjct: 22  TRQGLNRRAREEGWQKRRREGARG-KAVEYSWHSLP-DMVKKTLSLRTNPAEYQLSPQ-E 78

Query: 73  LEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDS 113
                  + ++++  E+    S ++REG++ LL+RL   D 
Sbjct: 79  TSATWNEIYRQLSDAERDFIVSFIVREGVLNLLKRLDYPDE 119


>UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Providencia
           RepID=B6XCH8_9ENTR
          Length = 118

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 1   MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
           +T  EL    G   S Q IN   R+E W +  + G+QG KA   H++    +        
Sbjct: 6   LTAKELVGRQGLPSSTQGINAMARRENWLSRKRRGIQG-KALEYHISSIPIDLEEPT--V 62

Query: 59  EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLL 105
             +              +      +++  E+    S ++R+G + L+
Sbjct: 63  MYEAPRIYHVKRDEHAHIWQEAYNQLSHDERVAVLSFIMRKGALALI 109


>UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5
           Tax=Enterobacteriaceae RepID=C2LKG3_PROMI
          Length = 115

 Score = 54.4 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T  EL  + G   S Q +N   ++E W    +   QG      H +    E +   E  E
Sbjct: 7   TAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQG-NGVEYHYSCLPEETLIALELYE 65

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
                  L+ + PL V+ V   +++   EQK  T L+LR+GI   L+++
Sbjct: 66  PLAHY-KLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSFLEKI 112


>UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6
           Tax=Enterobacteriaceae RepID=D2BRS4_DICD5
          Length = 140

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP- 58
           T +EL  + G   SRQ +NK  +  GW    + GVQG K     +     E      R  
Sbjct: 7   TTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQG-KGVEYAIWSLPEEVKATLMRAT 65

Query: 59  --------EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
                   E   +  + +     E   + +  +++  E+ +    +LREG + +L RL
Sbjct: 66  LMGTTLMRETAPDYVSAASAGAQEYTWIQIYHQLSAEERTRLIGHILREGAMSVLARL 123


>UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM
          Length = 728

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 2   TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQ 61
           T  ELA   G + + +    R+EGW    KPG  GG   LV                E +
Sbjct: 9   TAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLVV--SMPEGTALAVRMAEER 66

Query: 62  GEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLR 98
               A + D P      +     TP++ K+    L R
Sbjct: 67  TAVAAAASDHPPTTSAPSAPGAPTPLDPKRRQQALAR 103


>UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersinia kristensenii
           ATCC 33638 RepID=C4U3A5_YERKR
          Length = 73

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 33  GVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQF 92
           G+QG K     ++                 E  ++        + +   K++TP E+ +F
Sbjct: 2   GIQG-KGIEYFIDSLPDNVSTYIYHHSELFERISIQ---EHFDIWINAFKQLTPSERYKF 57

Query: 93  TSLLLREGIIGLLQRL 108
           +  +LREGII + + L
Sbjct: 58  SEYILREGIISIYKNL 73


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobac...   137   1e-31
UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobact...   127   8e-29
UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding...   122   5e-27
UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Ent...   119   2e-26
UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding...   119   3e-26
UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding...   118   6e-26
UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding...   116   2e-25
UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding...   116   2e-25
UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronoba...   115   3e-25
UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacter...   114   8e-25
UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Provide...   114   1e-24
UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-bindin...   114   1e-24
UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis...   113   2e-24
UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serrati...   104   9e-22
UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=...   100   1e-20
UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersin...    85   7e-16

Sequences not found previously or not previously below threshold:

UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinob...    67   2e-10
UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=M...    59   6e-08
UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Hae...    59   6e-08
UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10     55   6e-07
UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=...    54   1e-06
UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-bindin...    54   1e-06
UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU                53   3e-06
UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteur...    53   4e-06
UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella s...    52   5e-06
UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia hae...    52   5e-06
UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5 Tax...    52   7e-06
UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototroph...    52   7e-06
UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemoph...    51   1e-05
UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgar...    50   2e-05
UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinom...    49   4e-05
UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM5...    49   4e-05
UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8          49   4e-05
UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfo...    49   6e-05
UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella ba...    49   7e-05
UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU      48   9e-05
UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB...    48   1e-04
UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-Eb...    48   1e-04
UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas aue...    48   1e-04
UniRef50_A7JV32 Possible bacteriophage transcriptional regulator...    47   1e-04
UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillu...    47   2e-04
UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus in...    47   2e-04
UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio ...    47   2e-04
UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae Rep...    45   6e-04
UniRef50_B4TBP2 Putative cytoplasmic protein n=33 Tax=Salmonella...    45   0.001
UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolyt...    44   0.002
UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneiden...    43   0.002
UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pas...    42   0.005
UniRef50_B8FD28 Transposase-like Mu n=1 Tax=Desulfatibacillum al...    42   0.006
UniRef50_D2NHS7 Hypothetical phage protein n=1 Tax=Escherichia c...    42   0.008
UniRef50_C0DX48 Putative uncharacterized protein n=3 Tax=Neisser...    42   0.009
UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae R...    41   0.010
UniRef50_A9MJ52 Putative uncharacterized protein n=1 Tax=Salmone...    41   0.011
UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flex...    41   0.014
UniRef50_B7UGE5 Predicted DNA transposition protein n=2 Tax=Ente...    41   0.015
UniRef50_D2TQ32 Phage transposase n=14 Tax=Gammaproteobacteria R...    40   0.019
UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkeniv...    40   0.020
UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas ...    40   0.022
UniRef50_UPI0001699232 hypothetical protein Epers_01870 n=1 Tax=...    40   0.032
UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage...    38   0.072

>UniRef50_P0AD38 Uncharacterized protein yfeC n=111 Tax=Enterobacteriaceae
           RepID=YFEC_ECOL6
          Length = 114

 Score =  137 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG
Sbjct: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114
           QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK
Sbjct: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114


>UniRef50_P27238 Uncharacterized protein yfeD n=96 Tax=Enterobacteriaceae
           RepID=YFED_ECOLI
          Length = 130

 Score =  127 bits (320), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 9/122 (7%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER--- 57
           MT +ELA   G ++QT+N+W+R++GW T   PGV+GG+ARL+ V+ QV E+I+N      
Sbjct: 8   MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHN 67

Query: 58  ------PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
                  E +    A    AP    ++     MT +EQ++    L REGI   L RL I 
Sbjct: 68  TPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDID 127

Query: 112 DS 113
           +S
Sbjct: 128 ES 129


>UniRef50_C6CJR2 MuA-transposase/repressor protein CI DNA-binding n=9
           Tax=Enterobacteriaceae RepID=C6CJR2_DICZE
          Length = 136

 Score =  122 bits (305), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T +EL  + G   SRQ +NK  +  GW    + GVQG K     +     E      R E
Sbjct: 13  TTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQG-KGVEYAIWSLPEEVKTTLMR-E 70

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
              +   ++     E   + +  +++  E+ +    +LREG +G+L RL 
Sbjct: 71  TSPDYAVVTPTNVQESTWIQIYHQLSVEERTRLIGHILREGAMGMLARLE 120


>UniRef50_C4K715 Phage Mu DNA-binding domain protein n=15 Tax=Enterobacteriaceae
           RepID=C4K715_HAMD5
          Length = 115

 Score =  119 bits (299), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           +  EL    G   S Q IN+  R++GW    + GVQG KA   H++   +  ++   R +
Sbjct: 7   SAKELIHSPGLPSSTQGINQMARRQGWKHRRRLGVQG-KALEYHIDSLPKPILKQL-RLK 64

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
              E  +L+   P   + +   +++T  E+++  + L REGI GL++RL   
Sbjct: 65  EDAEKYSLNQQDP-FTIWIEAYRQLTDSEREKLIAFLFREGIQGLIKRLSND 115


>UniRef50_A8GHQ2 MuA-transposase/repressor protein CI DNA-binding n=3
           Tax=Enterobacteriaceae RepID=A8GHQ2_SERP5
          Length = 116

 Score =  119 bits (298), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 3   PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
             EL  + G   S Q IN   R+EGW +  + GVQG KA   H+N       R+    + 
Sbjct: 8   ARELTGIAGLPSSPQGINLMARREGWISRRRKGVQG-KAVEYHINSLPIG-ARSLLVLQE 65

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRD 112
                 L    PL  + V     ++  E+++  + L+REGI  LL  +   +
Sbjct: 66  DPAEYQLERQDPL-AVWVEYYYHLSESEREKVLTFLMREGIDSLLALIAAEE 116


>UniRef50_D2BRS4 MuA-transposase/repressor protein CI DNA-binding protein n=6
           Tax=Enterobacteriaceae RepID=D2BRS4_DICD5
          Length = 140

 Score =  118 bits (295), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP- 58
           T +EL  + G   SRQ +NK  +  GW    + GVQG K     +     E      R  
Sbjct: 7   TTNELLGVAGLPKSRQGLNKKAKDHGWERRRRKGVQG-KGVEYAIWSLPEEVKATLMRAT 65

Query: 59  --------EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
                   E   +  + +     E   + +  +++  E+ +    +LREG + +L RL 
Sbjct: 66  LMGTTLMRETAPDYVSAASAGAQEYTWIQIYHQLSAEERTRLIGHILREGAMSVLARLE 124


>UniRef50_B1JMJ9 MuA-transposase/repressor protein CI DNA-binding n=31
           Tax=Enterobacteriaceae RepID=B1JMJ9_YERPY
          Length = 115

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 3   PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
             ELA L G   S Q IN   ++EGW    + GVQG KA   H+       + + +  E 
Sbjct: 8   AKELAGLEGLPSSPQGINLMAKREGWEQRRRRGVQG-KAVEYHIGSLPITILNSLQLREE 66

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
             +  A +   PL  L V      T  E++Q  S + REG   L++RL + 
Sbjct: 67  PAQY-ATTRQDPL-TLWVEAYYRFTEAEREQVISFIFREGAKSLIERLEMD 115


>UniRef50_C5B7F4 MuA-transposase/repressor protein CI DNA-binding n=2
           Tax=Edwardsiella RepID=C5B7F4_EDWI9
          Length = 114

 Score =  116 bits (290), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           +  ELA + G+  + Q IN+  + EGW    + GVQG KA   H++    E +      +
Sbjct: 7   SAKELAGIGGFPSTPQAINQRAKSEGWRRQRRSGVQG-KAVEYHISCFPPEVVDELLARD 65

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLG 109
            Q +    S       +  ++  +M+  E+K+ TSL+LR GI   L+RLG
Sbjct: 66  EQAQYLISSNQPE--KVWYSILLQMSEEERKKVTSLILRIGINEFLRRLG 113


>UniRef50_A7MKV6 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MKV6_ENTS8
          Length = 129

 Score =  115 bits (289), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 10/123 (8%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
           MT  EL  L+GY+ Q I++W RK GW   P  G +GG A L+ + +QV +Y    ++   
Sbjct: 8   MTAGELGELSGYTAQAISRWARKYGWKRIPLKGRKGG-ALLILITQQVYDYFLATDKLRY 66

Query: 61  QGE---------APALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
                       AP ++ D  +    +   + ++P EQ + + L+  EG  GL++RLG+R
Sbjct: 67  SAHLYNRIEETPAPYVTWDNEMMAQFIRTLEMLSPQEQARLSELISEEGAAGLVKRLGLR 126

Query: 112 DSK 114
           D K
Sbjct: 127 DEK 129


>UniRef50_C4XBN9 Putative negative regulator n=7 Tax=Enterobacteriaceae
           RepID=C4XBN9_KLEPN
          Length = 130

 Score =  114 bits (286), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER--- 57
           MTP ELA   G +RQTIN+WVR++ W T   PGV+GG+ARLV +++ VRE++ N      
Sbjct: 8   MTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRH 67

Query: 58  -------PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                   E  G       DA    +     + MTP EQ Q   LL REGI G L RLGI
Sbjct: 68  LLTDNHLAESPGAYLVNEADAIWRQIT-ETLQLMTPAEQLQLRDLLAREGISGFLARLGI 126


>UniRef50_B6XCH8 Putative uncharacterized protein n=3 Tax=Providencia
           RepID=B6XCH8_9ENTR
          Length = 118

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 1   MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
           +T  EL    G   S Q IN   R+E W +  + G+QG KA   H++    +        
Sbjct: 6   LTAKELVGRQGLPSSTQGINAMARRENWLSRKRRGIQG-KALEYHISSIPIDLEEPTVMY 64

Query: 59  EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
           E                +      +++  E+    S ++R+G + L+  +
Sbjct: 65  E--APRIYHVKRDEHAHIWQEAYNQLSHDERVAVLSFIMRKGALALIDLI 112


>UniRef50_C2LKG3 MuA-transposase/repressor protein CI, DNA-binding n=5
           Tax=Enterobacteriaceae RepID=C2LKG3_PROMI
          Length = 115

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T  EL  + G   S Q +N   ++E W    +   QG      H +    E +   E  E
Sbjct: 7   TAMELTGIGGLPKSPQGVNAKAKRESWLKQKRTNKQG-NGVEYHYSCLPEETLIALELYE 65

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
                  L+ + PL V+ V   +++   EQK  T L+LR+GI   L+++
Sbjct: 66  PLAHY-KLNKEEPL-VIWVKAFQQLNDGEQKTVTELILRDGIRSFLEKI 112


>UniRef50_Q2NW40 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NW40_SODGM
          Length = 127

 Score =  113 bits (282), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 1   MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
           +   EL  + G   +RQ +N+  R+EGW    + G +G KA     +    + ++     
Sbjct: 8   IATHELIGVGGLPKTRQGLNRRAREEGWQKRRREGARG-KAVEYSWHSLP-DMVKKTLSL 65

Query: 59  EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDS 113
                   LS           + ++++  E+    S ++REG++ LL+RL   D 
Sbjct: 66  RTNPAEYQLSPQ-ETSATWNEIYRQLSDAERDFIVSFIVREGVLNLLKRLDYPDE 119


>UniRef50_A8G8Y9 Putative uncharacterized protein n=1 Tax=Serratia proteamaculans
           568 RepID=A8G8Y9_SERP5
          Length = 90

 Score =  104 bits (260), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 20  WVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVT 79
             R+EGW +  + GVQG KA   H++       RN    + +  +  +    PL V+ + 
Sbjct: 1   MARREGWNSRRRKGVQG-KALEYHIDSLPAGT-RNLLVLKEEPASYQVERKDPL-VVWIE 57

Query: 80  LAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR 111
               +T  E+++  + L+REGI  LL R+   
Sbjct: 58  YYYHLTECEREKVLAFLIREGIGSLLARISAD 89


>UniRef50_B8DLF1 Transposase-like Mu n=4 Tax=Desulfovibrio RepID=B8DLF1_DESVM
          Length = 728

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 2   TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQ 61
           T  ELA   G + + +    R+EGW    KPG  GG   LV                E +
Sbjct: 9   TAGELAAALGVTDRAVQMRARREGWQARRKPGRGGGNEWLVV--SMPEGTALAVRMAEER 66

Query: 62  GEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLR 98
               A + D P      +     TP++ K+    L R
Sbjct: 67  TAVAAAASDHPPTTSAPSAPGAPTPLDPKRRQQALAR 103


>UniRef50_C4U3A5 Phage-related DNA-binding protein n=1 Tax=Yersinia kristensenii
           ATCC 33638 RepID=C4U3A5_YERKR
          Length = 73

 Score = 85.1 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 33  GVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQF 92
           G+QG K     ++                 E  ++        + +   K++TP E+ +F
Sbjct: 2   GIQG-KGIEYFIDSLPDNVSTYIYHHSELFERISIQ---EHFDIWINAFKQLTPSERYKF 57

Query: 93  TSLLLREGIIGLLQRL 108
           +  +LREGII + + L
Sbjct: 58  SEYILREGIISIYKNL 73


>UniRef50_C5S4R0 Putative uncharacterized protein n=1 Tax=Actinobacillus minor
          NM305 RepID=C5S4R0_9PAST
          Length = 179

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
          +  ELA + G   + Q INK  R + W    K GVQGG A   H         +      
Sbjct: 9  SASELAGIQGLPKTPQGINKRARTQNWQKRNKDGVQGG-AVEYHYTSFPENVQQALGFIV 67

Query: 60 GQGEAPALSGDA 71
           Q E    + D 
Sbjct: 68 SQTEHSNQTRDD 79


>UniRef50_Q0EWA9 Transposase and inactivated derivative n=1 Tax=Mariprofundus
           ferrooxydans PV-1 RepID=Q0EWA9_9PROT
          Length = 742

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 1   MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVR--------- 49
           M   ELA L G   + + I K   +EGW +  +   Q GK      +             
Sbjct: 5   MPASELAGLPGLPGTDRGIRKLADREGWQSRKR---QKGKGLEYSPSSLPEVTRTHLAHL 61

Query: 50  EYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGL 104
                 +    Q E    +   P+E +     +EM   E  +   L+ R GI   
Sbjct: 62  SVKAAMDEVSKQPEYAQYAEAEPVESIPGVKTREMLDEEAAEHRRLIAR-GIAEF 115


>UniRef50_Q58ZD8 MuA transposase subunit-like protein n=6 Tax=Haemophilus influenzae
           RepID=Q58ZD8_HAEIN
          Length = 669

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 1   MTPDELARLTGYS--RQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREY-IRNAER 57
           +T  E+A + G S     +N+  RKE W      GVQGG       +    E       +
Sbjct: 5   VTAKEIAGIGGLSKHPTNVNRLARKEKWIFREIQGVQGG-GYEYSFSSLPLEVQTEYLLK 63

Query: 58  PEGQGEAPALSGDAPLEVLLVTLAKEMTPV--EQKQFTS 94
              + +    + D+  + ++ +    +     EQ++   
Sbjct: 64  HSEELKVNKENNDSNQQTMIESAWNVLASATFEQEKRAE 102


>UniRef50_P07040 Repressor protein CI n=3 Tax=root RepID=RPC1_BPD10
          Length = 174

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 3/113 (2%)

Query: 3   PDELARLTGYSRQTIN--KWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
             EL  + G  +   N  +    E W    + G +G  A   H+N    E  R  +    
Sbjct: 12  AKELEGMPGVPKLATNITRKAVAEDWVKRQRHGGKGV-AYEYHINSLPEETRRAIKGASL 70

Query: 61  QGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDS 113
             +    S    ++  L+     +TP EQ     ++   GI GL+  +  +D 
Sbjct: 71  SDKPVHTSIVHTVDERLIYAMSFLTPDEQAAAVEIIRVAGIKGLMPTIVSKDK 123


>UniRef50_Q30W02 Bacteriophage transposase A protein, putative n=4
          Tax=Desulfovibrio RepID=Q30W02_DESDG
          Length = 708

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 2  TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
          T  ELA     +  TI +   +EGW + P+ G  GG      ++             
Sbjct: 9  TAKELAIALNVTVMTITRRAEREGWQSRPRAGRGGGNEW--IISSMPEATRTKLLAA 63


>UniRef50_A4JDI5 MuA-transposase/repressor protein CI, DNA-binding n=2 Tax=root
           RepID=A4JDI5_BURVG
          Length = 726

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 2   TPDELA--RLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER 57
           T  ELA   L G   + Q +     +E W    +     GK     ++    E       
Sbjct: 10  TAPELAMLGLPGVPTTEQGVRYSATREKWAARRRAK---GKGLEYALDSLPAEAQAAIRH 66

Query: 58  PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
                   ++       V+      ++   + ++  +   R+GI+ +L R+
Sbjct: 67  RASAALVTSVPAQPAKAVIRREQQLQLVETDAQRLRAD-ARKGILSILDRI 116


>UniRef50_P07636 Transposase n=8 Tax=root RepID=TRA_BPMU
          Length = 663

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 1  MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
          ++P E A L G   +   +    +K+GW    + GV+GGKA   + N    E        
Sbjct: 5  VSPKECANLPGLPKTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLLR 64

Query: 59 EGQGE 63
          +G+ E
Sbjct: 65 QGEIE 69


>UniRef50_Q9CNL1 Putative uncharacterized protein n=1 Tax=Pasteurella multocida
          RepID=Q9CNL1_PASMU
          Length = 216

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 13 SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPALSGDAP 72
          S + I K   +EGW    + GV+G K    H         +     + +     ++    
Sbjct: 10 SDKGIVKKAAREGWQKRQRQGVKG-KTFEYHYTSFPIAVQQQLGLYQAEQPHSQVNEPRR 68

Query: 73 LEVLLVTLAKEMTPVEQKQFTSLL 96
                    E++ +E  Q    +
Sbjct: 69 HYTT------EVSSIENTQTEDHI 86


>UniRef50_A1RM55 Integrase, catalytic region n=1 Tax=Shewanella sp. W3-18-1
          RepID=A1RM55_SHESW
          Length = 727

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 1  MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
          +T  EL        +   + +  ++EGW    + G  GG     H+N       ++    
Sbjct: 6  LTAKELEDFPELPKTESGVIRRAKREGWICRKREGRGGG--FEYHLNSLPLAAQQHILSE 63

Query: 59 EGQGEAPALSGDA 71
          + + +    +  A
Sbjct: 64 KTKAQIAKKTEQA 76


>UniRef50_A7JV30 Bacteriophage transposase n=1 Tax=Mannheimia haemolytica PHL213
          RepID=A7JV30_PASHA
          Length = 656

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 3  PDELARLTGYS--RQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREY-----IRNA 55
            E+A L+G      ++++   KEGW      GV+G      H+     E      +  A
Sbjct: 7  AKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGV-TYEYHLTSLPIETQQQLRLNAA 65

Query: 56 ERPEGQGEAPALSGDAP 72
               Q        D P
Sbjct: 66 LAVIPQAAELQPKRDDP 82


>UniRef50_C0N301 Mu DNA binding, I gamma subdomain family n=5
           Tax=Gammaproteobacteria RepID=C0N301_9GAMM
          Length = 722

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 2   TPDELARLTGYSR--QTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T  ELA   G  +  + +N+   K+GW T     V+GG A   H++    E      +  
Sbjct: 10  TATELANKPGLPKYKRGVNQQASKQGWNTRQVK-VRGGSANEYHLSSLPVETQAALIKQH 68

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQ 91
                 + S           L +      QKQ
Sbjct: 69  LPTPVKSSSESTEFSYDPQALWQHYDNKPQKQ 100


>UniRef50_A9D2T9 Transposase, putative n=1 Tax=Hoeflea phototrophica DFL-43
          RepID=A9D2T9_9RHIZ
          Length = 647

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 2  TPDELARLTGYSRQTINKWVRKEGWTT-----SPKPGVQGGKARLVHVNEQVREYIRNAE 56
          TP E+A   G S + IN+  RK  W         + G  GG     HV+   +       
Sbjct: 6  TPKEIADAAGVSERAINQMARKSHWRHQDQKARKRAGRGGG--WEYHVSLFPQAAQARLM 63

Query: 57 RPEGQGEAPALSG-DAPLEVLLVTL 80
             G       +        L    
Sbjct: 64 VIHGAPANANRNKLADARSKLWARY 88


>UniRef50_B0UVF4 Putative uncharacterized protein n=1 Tax=Haemophilus somnus 2336
           RepID=B0UVF4_HAES2
          Length = 145

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T  EL  + G   + Q I  + +K+ W      GV+G      +V +       +    +
Sbjct: 6   TLKELLDVGGLPSTPQGIILYAKKDKWRRRRVSGVKG-NVFEYYVYDMPESVQTSLGVTK 64

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIRDSK 114
                     D   +     L + ++        ++LL  G++ + +RL I   +
Sbjct: 65  ETLALKQELIDDIQKENEKFLNQILSD-----IKNVLLNSGVLRIRERLSITKEE 114


>UniRef50_B8DK74 Transposase-like Mu n=3 Tax=Desulfovibrio vulgaris
           RepID=B8DK74_DESVM
          Length = 732

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 2   TPDELARLTGYSRQ-TINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA----- 55
           T  +L  L G S + T+ +   +EGWT+ P+ G  GG   L  +    +   +       
Sbjct: 9   TTRDLLPLLGISSESTVIRRASREGWTSRPRKGRGGGNEWL--LASMPKSTRKALLDGML 66

Query: 56  -----ERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGI 110
                E  +     P L    P   +   +   +     +Q    + R  +I  ++RL +
Sbjct: 67  RTAAQEAEKNLPALPPLDAADPRRAIAARM-SPLKHCSNRQREIAMARLALIREVERLAV 125


>UniRef50_A6W3I3 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MWYL1
          RepID=A6W3I3_MARMS
          Length = 216

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 2  TPDELARLTGYSRQTIN--KWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
          T  ELA   G      N  +  + + W      G++G      H +   +E         
Sbjct: 7  TAAELAGQKGMPAHATNVTRKAKSQNWEYRQITGLRGVN-FEYHASSLPQETQEALGLEG 65

Query: 60 GQGEAPALSGDAPLEVLLVTLAKEMT 85
                A + D+ +  + +  AK  T
Sbjct: 66 VSKPVQAENNDSNMVTIQIYSAKAKT 91


>UniRef50_D2YK71 Transposase, putative n=1 Tax=Vibrio mimicus VM573
           RepID=D2YK71_VIBMI
          Length = 748

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 2   TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
           T  ELA L G   + + +     KE W   P+     GK    H+     E I +  R  
Sbjct: 7   TSTELAGLPGLPSTDRNVRIKAEKENWEKRPREI---GKGFEYHIRSFPMETIAHLSRD- 62

Query: 60  GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLL-LREGIIGLLQRLGIRD 112
                  L   +  E+    L  E+   EQ +   +L   +G + LL  L   D
Sbjct: 63  ------FLQQKSEGELAAEKLVAELAAKEQAKKRHVLNASQGAMRLLNTLKAED 110


>UniRef50_B7UXK6 Transposase A n=6 Tax=root RepID=B7UXK6_PSEA8
          Length = 689

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
          +  ELA L G   + + +     ++ W+   +    G KA   HV+   +E         
Sbjct: 6  SAQELAGLPGVPGTARNVKAMAERKSWSGRRRV---GTKAIEYHVSALPKETRAALLNAA 62

Query: 60 GQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLL 96
              A           L+ T  +++    ++     L
Sbjct: 63 LGEVATKAVRQETQLALVETNRQQLVADARQGVLHAL 99


>UniRef50_B6WSU4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC
           29098 RepID=B6WSU4_9DELT
          Length = 697

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 11/105 (10%)

Query: 2   TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQ 61
           +  ELA   G + ++++   ++EGW   P+ G  GGK  L  V+    E          +
Sbjct: 9   STQELAHYLGITVKSVHIRAKREGWQALPRAGRGGGK--LWVVSSMPAEIRDRLASALLR 66

Query: 62  GEAPALSGDAPLEVLLVTLAK---------EMTPVEQKQFTSLLL 97
             A  +   A    +   +            ++  E+   T+ L 
Sbjct: 67  QPAAIIEESAACASIGSNICAPIGTAGNGPALSDRERAIVTARLA 111


>UniRef50_A9L0K4 Integrase catalytic region n=2 Tax=Shewanella baltica
           RepID=A9L0K4_SHEB9
          Length = 738

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 2   TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQ 61
           +  E+A L     + +    ++E W    + G+ GG     H+N    E  +     + +
Sbjct: 7   STVEIAELLDVGDRRVRDRAKQENWQKQRRQGLGGG--FEYHLNSLPLEARQKL--AKQE 62

Query: 62  GEAPALSGDAPLEVLLVTLAKEMTPVEQ----KQFTSLL 96
            E  A S  + +         +M  V Q    K     +
Sbjct: 63  AEQIATSPTSLMRAGSAVAKLQMPAVSQTEKAKSIQQFI 101


>UniRef50_P06019 Repressor protein CI n=3 Tax=root RepID=RPC1_BPMU
          Length = 174

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 16 TINKWVRKEGWTTSPKPGVQGGKARLVHVNEQV----REYIRNAERPEGQGEAPALSGDA 71
           ++     +GWT   K GV+GGKA    V         + I +         A A     
Sbjct: 12 GVHYRANVQGWTKQKKEGVKGGKAVEYDVMSMPTKEREQVIAHLGLSTPDTGAQANEKQD 71

Query: 72 ------PLEVLLVTLAKEMTPVEQKQ 91
                 L   L+ + +E+ P E ++
Sbjct: 72 SSELINKLTTTLINMIEELEPDEARK 97


>UniRef50_Q2LQD6 Transposase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQD6_SYNAS
          Length = 754

 Score = 47.7 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 2   TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQ 61
           +  ELA + G S Q I K   +EGW    + G  GGK +L        ++     R    
Sbjct: 14  SAKELAVIMGISWQAIQKRADQEGWPCEMETGR-GGKRKLFRRAVLPVDWQARIARQRAA 72

Query: 62  GEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRL 108
             A A++ ++P           +  +E+++    L++E  +    RL
Sbjct: 73  QAAAAIAPESPEMAGYRAARNYLEDLEREKEEKRLIKERGLVEFARL 119


>UniRef50_B8GS44 Transposase A n=1 Tax=Thioalkalivibrio sp. HL-EbGR7
          RepID=B8GS44_THISH
          Length = 671

 Score = 47.7 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
          +   LA L G   ++Q +    +++GW    + G  GG+      +           +  
Sbjct: 10 SAKALAGLPGMPGTQQNVTAKAKRDGWACRKRSGKGGGR--EYAFSSLPIATQAALLKAA 67

Query: 60 GQGEAPALSGDAPLE 74
                A +      
Sbjct: 68 EPAARAARAAQGEPA 82


>UniRef50_C4LBA7 Integrase catalytic region n=1 Tax=Tolumonas auensis DSM 9187
          RepID=C4LBA7_TOLAT
          Length = 741

 Score = 47.7 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 3  PDELARLTGYSRQ---TINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA 55
            ELA L G   Q    + K   +E W    +     GK    H++    E     
Sbjct: 7  SSELAGLVGL-PQYQDGVRKKADREDWKNRKRES---GKGLEYHISSLPSETRAYL 58


>UniRef50_A7JV32 Possible bacteriophage transcriptional regulator n=1
          Tax=Mannheimia haemolytica PHL213 RepID=A7JV32_PASHA
          Length = 225

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 8/82 (9%)

Query: 2  TPDELARLTGYSRQTIN--KWVRKEGWTTSPKPGVQGGKARLVHVNEQVREY-----IRN 54
          T  E+A +     Q  N  +   K  W      G +G  A   H +              
Sbjct: 11 TASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEGKRGV-AFEYHYSSLPISVQQELGFAQ 69

Query: 55 AERPEGQGEAPALSGDAPLEVL 76
              E      A      +E +
Sbjct: 70 TAVKEEPRTLVAAQTADEMERV 91


>UniRef50_C5S4Q8 Putative phage transposase n=1 Tax=Actinobacillus minor NM305
          RepID=C5S4Q8_9PAST
          Length = 663

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPE 59
          +  +LA + G   S Q +NK  R+E W    + G Q GKA   H++    E  +      
Sbjct: 6  SASDLAGVKGMPSSPQGVNKKARQELWQKQQQIGKQ-GKAFEYHISSLPPETQQALRLQA 64

Query: 60 GQGEAPALS 68
               P   
Sbjct: 65 ALAVVPIAE 73


>UniRef50_Q58ZE0 CI repressor-like protein n=5 Tax=Haemophilus influenzae
          RepID=Q58ZE0_HAEIN
          Length = 166

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 3  PDELARLTGYSR--QTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA 55
          P +LA L   S     + +  ++EGW      G++GG     H +       +  
Sbjct: 10 PRDLAGLGDLSPFPSNVTRKAKQEGWIKREAKGIKGG-GFEYHYSSLPPAVQQAL 63


>UniRef50_A6D441 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
          RepID=A6D441_9VIBR
          Length = 230

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 3  PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEG 60
            EL  L G   S   I +  +++GW +    G    +A   H++    E      R + 
Sbjct: 7  ASELMDLPGMPSSNSGIAQKAKRDGWKSRKTRGQ--SRALEYHISSF-DERDLAELREKY 63

Query: 61 QGEAPALSGDAPLEVLLVTLAKEMT 85
            E      D   E+  V   K+ +
Sbjct: 64 GTEVI---PDNVTEISNVKAIKDFS 85


>UniRef50_B0US86 Transposase-like Mu n=20 Tax=Pasteurellaceae RepID=B0US86_HAES2
          Length = 662

 Score = 45.0 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 2  TPDELARLTGY----SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAE 56
          +  EL  L       +++ +    ++E W +  + G  GG      ++   +E      
Sbjct: 9  SAQELIGLQLVILPTTKKAVIDKAKRENWQSRKRVGRGGG--VEYALSSLPQEVQEEIR 65


>UniRef50_B4TBP2 Putative cytoplasmic protein n=33 Tax=Salmonella enterica
           RepID=B4TBP2_SALHS
          Length = 124

 Score = 44.7 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 2   TPDELARLTGY--SRQTINKWVRK--EGWTTSPKPGVQGGKARLVHVNEQVREYIRNAE- 56
           T  E   L G+  S   + + + K  EG     +  V+  KA   H++       R  + 
Sbjct: 7   TVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRVK-SKAEEFHISVFPLYVHRYLDD 65

Query: 57  RPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTS 94
             E     P    +A  E +   + + +TP ++KQ T 
Sbjct: 66  SGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVTG 103


>UniRef50_A7JUV9 Possible transposase n=1 Tax=Mannheimia haemolytica PHL213
           RepID=A7JUV9_PASHA
          Length = 176

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 2   TPDELAR----LTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER 57
           +  ELA         ++Q +    +K+GWTT  K GV GG+     ++   +E      R
Sbjct: 11  SAKELAELSLACLPKTKQGVLYQAKKQGWTTHKKVGV-GGEILEFALSNLPQEIQTEI-R 68

Query: 58  PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQK------QFTSLLLR-EGIIGLLQRLGI 110
                            V        +T  +++         + +L  EG +  ++ +  
Sbjct: 69  SRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREIADARMALVAYVLELEGSMSRIKAITY 128


>UniRef50_Q8EJ30 Transposase, putative n=1 Tax=Shewanella oneidensis
          RepID=Q8EJ30_SHEON
          Length = 715

 Score = 43.1 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVR 49
          +P EL +L G   + Q I    + E W +  K    G K    H+     
Sbjct: 7  SPQELLQLPGMPTTVQGIRFKAKTESWESRKKE---GSKGFEYHLGSLPP 53


>UniRef50_O05069 Mu-like prophage FluMu transposase A n=5 Tax=Pasteurellaceae
           RepID=TRA_HAEIN
          Length = 687

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 13  SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGE-APALSGDA 71
           + + I +  ++E W +  + G  GG      +     E            + A AL    
Sbjct: 26  APKNIWEQAKRENWKSQKRQGRGGG--LEYELASLPIEVQNELLLKTTPEQTAVALQKIE 83

Query: 72  PLEVLLVTLAKEMTPVEQKQFTS 94
               L      ++      +   
Sbjct: 84  ETRPLASNEVWQLWDEASAKAQE 106


>UniRef50_B8FD28 Transposase-like Mu n=1 Tax=Desulfatibacillum alkenivorans AK-01
          RepID=B8FD28_DESAA
          Length = 682

 Score = 42.0 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 1  MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQ-GGKARLVHVNEQVREYIRNAERPE 59
          +T  +LA++ G  R T+ +  +KEGW        Q GG  +L H N       R     E
Sbjct: 7  VTCSQLAQVIGQHRSTVLRRAQKEGWAFHEIANRQGGGHQKLYHFNSLPMSIQRAIIEKE 66

Query: 60 GQGEAPALSGDAP 72
             +    +    
Sbjct: 67 LNAQDNGPAPPPE 79


>UniRef50_D2NHS7 Hypothetical phage protein n=1 Tax=Escherichia coli SE15
           RepID=D2NHS7_ECOLX
          Length = 169

 Score = 41.6 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 1   MTPDELARLTGYSRQTINKWVRKEGWTT---SPKPGVQGGKARLVHVNEQVREYIRNAER 57
           +T +E   + G         +R E   +     +     GK  + H++        + ER
Sbjct: 32  LTAEEFTHIEGMPGTARGARMRLEKLASLHPEIRRKRTAGKGVVYHISA--ATMSLDDER 89

Query: 58  PEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLR 98
              +GEA  L+       L V L + M+P  + Q     LR
Sbjct: 90  NRAKGEAFTLNDSDRQLSLWVQLYRNMSPASRAQLMEQALR 130


>UniRef50_C0DX48 Putative uncharacterized protein n=3 Tax=Neisseriaceae
          RepID=C0DX48_EIKCO
          Length = 548

 Score = 41.6 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 1  MTPDELARL----TGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAE 56
          ++  ELA+L       + + I+   ++E W    +    GG      V     E      
Sbjct: 8  LSAAELAQLSIPSLPKTPKGISDKAKREYWPNRRRAQRGGG--VEYQVAGLPEEIQAAVR 65

Query: 57 RPEGQGEAPALSGDA 71
            E Q E        
Sbjct: 66 --ERQAEQLLAQSQP 78


>UniRef50_A3VYG1 Transposase, putative n=5 Tax=Rhodobacteraceae RepID=A3VYG1_9RHOB
          Length = 707

 Score = 41.2 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 7/81 (8%)

Query: 13  SRQTINKWVRKEGWTT-----SPKPGVQGGKARLVHVNEQVREYIRNAERPEGQGEAPAL 67
           +++ IN    +EGW         + G  GG     H +                  A   
Sbjct: 27  TKRKINLLAEREGWARHAGKVRRRKGAGGG--VEYHWSLLPIRARMRLSADLVNSPAARP 84

Query: 68  SGDAPLEVLLVTLAKEMTPVE 88
             D   E       K  T  E
Sbjct: 85  GKDEAWERYAAAGDKARTEAE 105


>UniRef50_A9MJ52 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- RepID=A9MJ52_SALAR
          Length = 124

 Score = 41.2 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 2   TPDELARLTGY--SRQTINKWVRK--EGWTTSPKPGVQGGKARLVHVNEQVREYIRNA-E 56
           T  E   L G+  S   + + + K  EG     +  ++  KA   H++       R   E
Sbjct: 7   TVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRLK-SKAEEFHISVFPLYVHRYLDE 65

Query: 57  RPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGIIGL 104
             E          +A  + +   + + +TP ++KQ T L   +G+  +
Sbjct: 66  GGEEPVSDHISVQEAEPKDIWEMMFRLLTPEQRKQVTGLFRVKGMKAV 113


>UniRef50_Q0T6N1 Putative repressor protein n=3 Tax=Shigella flexneri
          RepID=Q0T6N1_SHIF8
          Length = 169

 Score = 40.8 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 1  MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLV 42
          MTP ++  L G   + Q ++K  +KEGW    + G +G      
Sbjct: 11 MTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGP-GVEY 53


>UniRef50_B7UGE5 Predicted DNA transposition protein n=2 Tax=Enterobacteriaceae
          RepID=B7UGE5_ECO27
          Length = 680

 Score = 40.8 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 25/105 (23%)

Query: 2  TPDELARLTGY--SRQTI----NKWVRKE-GWTTSPKPGVQGGKARLVHVNEQVREYIRN 54
          + +ELA L G   + Q +    N+       W        +G KA   H++    E  + 
Sbjct: 4  SANELAGLPGLPGTVQGVRWTLNRITETHPEWKRKR----EGTKAFEYHIDCLPAEAQKV 59

Query: 55 AERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLRE 99
            +               L   ++  A+    VEQK   ++ +R+
Sbjct: 60 LRKR--------------LTHQVLEDAQLPAVVEQKAVKNVAVRD 90


>UniRef50_D2TQ32 Phage transposase n=14 Tax=Gammaproteobacteria RepID=D2TQ32_CITRO
          Length = 695

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 13/94 (13%)

Query: 2  TPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP- 58
          +  EL  L G   + Q +   +RK   + + +   +G K     ++       +      
Sbjct: 4  SVKELVGLPGMPGTEQGVRYSIRKYATSETSRRRQEGTKGFEYSIDCLPEVTQQALRERY 63

Query: 59 ----------EGQGEAPALSGDAPLEVLLVTLAK 82
                    E        +  +P  V  V   +
Sbjct: 64 ALQLMTQKADESPAPVVTKARRSPDVVDAVEAYR 97


>UniRef50_B8FGN6 Mu transposase n=1 Tax=Desulfatibacillum alkenivorans AK-01
          RepID=B8FGN6_DESAA
          Length = 653

 Score = 40.4 bits (93), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 2  TPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAER 57
          T  E+A+  G + +++ +   KEGW         G K    H +        +  +
Sbjct: 7  TAQEIAKAIGLNERSVQRRANKEGWLYVAIKCRGGRKKVFAH-SGLPIPVQASLLK 61


>UniRef50_Q125Z1 Integrase, catalytic region n=1 Tax=Polaromonas sp. JS666
          RepID=Q125Z1_POLSJ
          Length = 772

 Score = 40.0 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 3/57 (5%)

Query: 1  MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNA 55
          +T +EL  L      ++ +++     GW      G  G + R  HV           
Sbjct: 9  LTANELLGLPNMPADKRGVHRKALASGWQYREVAGNGGTR-REYHVASLPATTRAAL 64


>UniRef50_UPI0001699232 hypothetical protein Epers_01870 n=1 Tax=Endoriftia persephone
           'Hot96_1+Hot96_2' RepID=UPI0001699232
          Length = 150

 Score = 39.7 bits (91), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 1   MTPDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHVNEQVREYIRNAERP 58
           +T  ELA L G   + +++N+     G     K     GK     +     E  R   R 
Sbjct: 5   LTAAELAGLPGMPGTPRSVNR-AGDRGEIERRKKAK--GKGWEYSLTSLPAETQRYLTRT 61

Query: 59  EGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREG-IIGLLQRLG 109
                A A     P  + L  +   +T  +++Q  + L     I  L QRLG
Sbjct: 62  AAAEIAKAAPPQPPAPIELPLMPD-LTDWQREQMHARLAVLSVIDELAQRLG 112


>UniRef50_Q38452 Transposase (Fragment) n=1 Tax=Pseudomonas phage D3112
          RepID=Q38452_BPD31
          Length = 48

 Score = 38.5 bits (88), Expect = 0.072,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 3  PDELARLTGY--SRQTINKWVRKEGWTTSPKPGVQGGKARLVHV 44
          P +LA L G   + + + K   +EGW      G  GG     HV
Sbjct: 7  PTKLAGLPGLPTTDRGVRKLAEREGWKKQKHSGRGGG--YEYHV 48


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.305    0.135    0.349 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,329,611
Number of Sequences: 3077464
Number of extensions: 17873541
Number of successful extensions: 53180
Number of sequences better than 1.0e-01: 68
Number of HSP's better than  0.1 without gapping: 37
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 53052
Number of HSP's gapped (non-prelim): 101
length of query: 114
length of database: 1,040,396,356
effective HSP length: 81
effective length of query: 33
effective length of database: 791,121,772
effective search space: 26107018476
effective search space used: 26107018476
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.3 bits)
S2: 87 (38.1 bits)