235 d1uasa2 Probab=86.16   E-value=2.2  Score=21.01  Aligned_columns=100  Identities=28%

Q ss_pred             HHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999863475897-----499799988950265333465555556767888856554310473458999999999999988
Q batch____       229 RGLTNKLDYLQQ-----LGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQR  303 (676)
Q Consensus       229 ~GI~~KLDYLk~-----LGV~aIwLsPi~~~~~~~~~~~~~~~~p~~~~HGY~~~Dy~~IDp~fGT~eDfk~LV~~aH~r  303 (676)
                      +.|.+.+|.|++     +|++.|-|                 +-.....-+-+..++..=..+|-.  .++.|++.+|++
T Consensus        26 ~~i~~~~~~l~~~gl~~~G~~~~~i-----------------DdGW~~~~~d~~G~~~~~~~~FP~--Gl~~l~~~i~~~   86 (273)
T d1uasa2          26 QIIRETADALVNTGLAKLGYQYVNI-----------------DDCWAEYSRDSQGNFVPNRQTFPS--GIKALADYVHAK   86 (273)
T ss_dssp             HHHHHHHHHHHHTSHHHHTCCEEEC-----------------CSSCBCSSCCTTSCCCBCTTTCTT--CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHCCCEEEEE-----------------CCCCCCCCCCCCCCEEECCCCCCC--CHHHHHHHHHHC
T ss_conf             9999999999974971419719997-----------------388678777777765355140687--189999999988


Q ss_pred             CCEEEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99899997125457731000000000112346655556665453233567776554444667778865431112565422
Q batch____       304 GIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIR  383 (676)
Q Consensus       304 GIkVIlD~V~NHts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~  383 (676)
                      |||.-+     |+.                                                                  
T Consensus        87 G~k~Gi-----w~~------------------------------------------------------------------   95 (273)
T d1uasa2          87 GLKLGI-----YSD------------------------------------------------------------------   95 (273)
T ss_dssp             TCEEEE-----EEE------------------------------------------------------------------
T ss_pred             CCCCEE-----EEC------------------------------------------------------------------
T ss_conf             981238-----830------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             35677666564101355454764344462112333334578873111578889999999999999985299889973
Q batch____       384 TDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVD  460 (676)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~lpdln~~~~~~~~~~~~~~~~~~~~~~~~~n~~V~~~l~~~~~~Wi~~~giDGfRiD  460 (676)
                                                               |+....+...|.+++++...++.+. +.|||.+.+|
T Consensus        96 -----------------------------------------pg~~~~d~~~P~~~~~~~~~~~~~~-~wGvd~iK~D  130 (273)
T d1uasa2          96 -----------------------------------------AGSQTCSNKMPGSLDHEEQDVKTFA-SWGVDYLKYD  130 (273)
T ss_dssp             -----------------------------------------SSSBCTTSSSBCCTTCHHHHHHHHH-HHTCCEEEEE
T ss_pred             -----------------------------------------CCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEEC
T ss_conf             -----------------------------------------8871277876678899999999999-7399869645