15 d1pama4 Probab=100.00  E-value=0  Score=561.54  Aligned_columns=386  Identities=25%

Q ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHCCCCEEEECCCCCCC
Q ss_conf             56778711056427888621234788653766767777765545746873899986347--5897499799988950265
Q batch____       178 TDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLD--YLQQLGVNALWISAPFEQI  255 (676)
Q Consensus       178 ~~~~~~~~w~~~~iY~i~~drF~nGd~~Nd~~~~~~~~~~~~~~~~~GGDl~GI~~KLD--YLk~LGV~aIwLsPi~~~~  255 (676)
                      ...+.|.||+++||||||||||+|||++|+...............||||||+||++|||  |||+||||+||||||++++
T Consensus         4 ~~~~~~~w~~~~viY~i~~~~F~~~d~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLD~~YLk~LGv~~I~L~Pi~~~~   83 (406)
T d1pama4           4 TSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGIINKINDGYLTGMGITAIWISQPVENI   83 (406)
T ss_dssp             TSTTCCSCCTTCCEEECCGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHHHHHHHTTTTGGGTCCEEEECCCEEEC
T ss_pred             CCCCCHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCCCCC
T ss_conf             88888335302828998211135778676766666666766655646886899997449888996299899987763465


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf             33346555555676788885655431047345899999999999998899899997125457731000000000112346
Q batch____       256 HGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYLS  335 (676)
Q Consensus       256 ~~~~~~~~~~~~p~~~~HGY~~~Dy~~IDp~fGT~eDfk~LV~~aH~rGIkVIlD~V~NHts~~~~~~~~~~~~~~~~~~  335 (676)
                      ........   ++..+||||+++||++|||+|||++|||+||++||+|||+||||+|+||||..+.++...+.....+..
T Consensus        84 ~~~~~~~~---~~~~~~~GY~~~d~~~id~~~Gt~~dfk~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~  160 (406)
T d1pama4          84 YSVINYSG---VNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDN  160 (406)
T ss_dssp             CCCEEETT---EEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEET
T ss_pred             CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf             54445566---676777774657454337343899999999999987898999976045246876321000024655567


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65555666545323356777655444466777886543111256542235677666564101355454764344462112
Q batch____       336 GDEVKKSLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTAS  415 (676)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~lpdln~~~~~~~  415 (676)
                      ...........-..........+...                                ..........+||||++     
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~dln~~-----  203 (406)
T d1pama4         161 GNLLGGYTNDTQNLFHHYGGTDFSTI--------------------------------ENGIYKNLYDLADLNHN-----  203 (406)
T ss_dssp             TEEEECSTTCTTCCBCCSCBCCCSSH--------------------------------HHHHHSBSTTEEEBCTT-----
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------CCCCCCCCCCCCCCCCC-----
T ss_conf             66466677666673466677777776--------------------------------76200685535431589-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             33333457887311157888999999999999998529988997355305988999999988999999999857620147
Q batch____       416 GLPVFYKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAALREWKKANPDKALDD  495 (676)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~n~~V~~~l~~~~~~Wi~~~giDGfRiD~v~~i~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~  495 (676)
                                        |+.|++++++++++|+ ++||||||+|++++++..+|++++..+++.               
T Consensus       204 ------------------~p~v~~~~~~~~~~w~-e~giDGfR~D~~~~~~~~~~~~~~~~~~~~---------------  249 (406)
T d1pama4         204 ------------------NSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNY---------------  249 (406)
T ss_dssp             ------------------SHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHHHHHHHHHHH---------------
T ss_pred             ------------------CHHHHHHHHHHHHHHH-HCCCCEEEECCHHHCCHHHHHHHHHHHHHC---------------
T ss_conf             ------------------8899999999999998-449978887575658989999999998515---------------


Q ss_pred             CCEEEEEEECCCCH----HHHHHHCCCCCEEECHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf             97799984317824----5566641376632264899998877644-----99999999987742148831896367876
Q batch____       496 KPFWMTGEAWGHGV----MQSDYYRHGFDAMINFDYQEQAAKAVDC-----LAQMDTTWQQMAEKLQGFNVLSYLSSHDT  566 (676)
Q Consensus       496 ~~~~~~gE~~~~~~----~~~~~~~~g~d~~~nf~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~fl~nHD~  566 (676)
                      +++++++|++....    ....+...++++++||.+...+...+..     ....................++|++|||+
T Consensus       250 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~  329 (406)
T d1pama4         250 KPVFTFGEWFLGVNEISPEYHQFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVDYAQVNDQVTFIDNHDM  329 (406)
T ss_dssp             SCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHSTTGGGCEECSCCTTS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCEEECCCCCC
T ss_conf             96399983116752453466523666771220717999999997088877899999985234315670210431678762


Q ss_pred             HHH------HHHHHHHHHHHHHHCCCEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             899------99999999999980798099877241668999998867675687883324743058999999999997748
Q batch____       567 RLF------REGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARH  640 (676)
Q Consensus       567 ~r~------~~r~~~a~~~llt~pGiP~IYYGdEiG~~~~~~~~d~~~~~R~~m~W~~~~~~~~~l~~~ykkL~~lRk~~  640 (676)
                      .|+      ..+.++|++++||+||+|+||||||+|++++.++..     |.+|+|.+   .+++++++||+|++|||+|
T Consensus       330 ~R~~~~~~~~~~~~~a~~~~~~~pG~P~iy~G~E~g~~g~~d~~~-----r~~~~~~~---~~~~~~~~~~~L~~lR~~~  401 (406)
T d1pama4         330 ERFHTSNGDRRKLEQALAFTLTSRGVPAIYYGSEQYMSGGNDPDN-----RARLPSFS---TTTTAYQVIQKLAPLRKSN  401 (406)
T ss_dssp             CCSCCTTSCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGG-----GCCCCCCC---SCSHHHHHHHHHTTHHHHC
T ss_pred             CHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHCCCCCCCCHHH-----CCCCCCCC---CCHHHHHHHHHHHHHHHHC
T ss_conf             235430582899999999999828971987671015078856322-----45478875---6418999999999999876


Q ss_pred             HHHHC
Q ss_conf             54416
Q batch____       641 PAIGA  645 (676)
Q Consensus       641 pAL~~  645 (676)
                      |||++
T Consensus       402 paL~~  406 (406)
T d1pama4         402 PAIAY  406 (406)
T ss_dssp             HHHHC
T ss_pred             CCCCC
T ss_conf             21359