180 c3iraA_ Probab=97.39   E-value=0.001  Score=41.63  Aligned_columns=103  Identities=10%

Q ss_pred             CCEEEEEECCCCCCHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHCCC
Q ss_conf             98799996276552235552555787665420110001234446623323444443102556412201663268998098
Q batch____        31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
Q Consensus        31 Gk~vvL~F~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~is~~~~~~~~~~~~~~~~~~~~~f~~~~D~~~~ia~~ygv  110 (187)
                      ||+++|+|+ ++||..|.......-...+--+..+-.++.+-+|.++.......-               .......||+
T Consensus        39 ~Kpi~l~~~-a~wC~~C~~m~~~~f~d~~v~~~ln~~FV~vkvD~ee~pdl~~~y---------------~~~~~~~~g~  102 (172)
T c3iraA_          39 NKPVFLSIG-YSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIY---------------MTVCQIILGR  102 (172)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHH---------------HHHHHHHHSC
T ss_pred             CCCEEEEEE-CCCCCHHHHHHHHHHCCHHHHHHHHCCCEEEEECCCCCCCHHHHH---------------HHHHHHHHCC
T ss_conf             990999985-078721445567763428899996649159996288681078999---------------9999987088


Q ss_pred             CCCCCCCCCCEEEEECCCCEEEEEEECCCCCCC----CHHHHHHHHHHH
Q ss_conf             345566413358999799979999974988778----999999999963
Q batch____       111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGR----DASDLLRKIKAA  155 (187)
Q Consensus       111 ~~~~~~~~~p~tfiID~~G~Ir~~~~~~~~~gr----~~~e~lr~l~al  155 (187)
                      -+      .|.+++++|+|+..+...+--+.++    ...++|+.+..+
T Consensus       103 ~G------~P~~vfltPdgkp~~~~tY~P~~~~~~~~~f~~~L~~i~~~  145 (172)
T c3iraA_         103 GG------WPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI  145 (172)
T ss_dssp             CC------SSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred             CC------CCEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99------83699996899877630335877657810189999999999